Tetra-Nucleotide Repeats in Yeast Complete Genome Sequences
Tetra-Nucleotide Repeats in Yeast Complete Genome Sequences
Genomic sequence...
gi|6319247|ref|NC_001133.1|| Saccharomyces cerevisiae chromosome I, complete chromosome sequence
Position Repeat Coverage Repeat
9 CACC * 5 18/20 CACC CACA CACC CACA CACC
9230 TATT * 5 19/20 TATT TTTT TATT TATT TATT
23739 TAAA * 5 18/20 TAAA TAAA TAAA TAAA ATAA
71109 AGAA * 5 18/20 AGAA AGAA AGAA AAAA AAAA
118309 AATA * 5 18/20 AATA AATA AATA AAAA TATA
-----------------------------------------------------------------------------
Total sequence length......................... 230203
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 5
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AATA-1 AGAA-1 TAAA-1 TATT-1 CACC-1
----------------------------------------------------------------------------
Genomic sequence...
gi|6319354|ref|NC_001134.1|| Saccharomyces cerevisiae chromosome II, complete chromosome sequence
Position Repeat Coverage Repeat
126102 ACAT * 5 18/20 ACAT ACAT ATAT ACAT ATAT
248663 TATC * 5 19/20 TATC TATC TATC TATC TATT
290483 ACAT * 5 19/20 ACAT ACAT ACAC ACAT ACAT
316890 AAAC * 8 29/32 AAAC AAAC AAAC AAAC AAAC AAAA AAAA AAAA
344495 ATAC * 5 19/20 ATAC ATAC ATAC ATAC ATAT
351900 AATA * 5 18/20 AATA ACTA AGTA AATA AATA
381956 CAAA * 5 18/20 CAAA AAAG CAAA CAAA CAAA
505356 AAAC * 5 18/20 AAAC AAAC AAGC AAAC AAAA
646039 ATAC * 5 18/20 ATAC ATAT ATAC ATAT ATAC
658051 ACAA * 5 18/20 ACAA ACAA GCAA ACAA AAAA
679458 AGTG * 5 18/20 AGTG TGTG AGTG TGTG AGTG
727340 TTTA * 5 18/20 TTTA TTTA TTTA TTTA GGTA
-----------------------------------------------------------------------------
Total sequence length......................... 813140
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 12
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAC-2 AATA-1 ATAC-2 AGTG-1 ACAA-1 ACAT-2 TATC-1 TTTA-1
CAAA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|6319780|ref|NC_001135.1|| Saccharomyces cerevisiae chromosome III, complete chromosome sequence
Position Repeat Coverage Repeat
29284 TTTG * 11 41/44 TTTG TTTG TTTA TTTG TTTG TTTG CTTG TTTG TTTG TTTG TTTT
29434 TTTA * 6 22/24 TTTA TTTA TTTG TTTA TTTA TTTG
37759 ATAC * 5 18/20 ATAC ATAT ATAT ATAC ATAC
41720 CTTT * 5 18/20 CTTT ATTT TTTT CTTT CTTT
52445 GTAT * 5 18/20 GTAT GTAT GTAT GTAT GATT
246650 TACA * 11 40/44 TACA TACA TACA TACA CACA TACA TACA TACA TACA TATA TTTA
-----------------------------------------------------------------------------
Total sequence length......................... 315339
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 6
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
ATAC-1 TACA-1 TTTA-1 TTTG-1 GTAT-1 CTTT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|6319952|ref|NC_001136.1|| Saccharomyces cerevisiae chromosome IV, complete chromosome sequence
Position Repeat Coverage Repeat
54132 AAAT * 6 22/24 AAAT AAAT AAAT AAAT AAAT GTAT
74306 TAAA * 5 18/20 TAAA TAAA TAAA TAAA TGAC
149115 AAAT * 15 55/60 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AATA TACG
246565 TGTA * 6 22/24 TGTA TGTA TGTA TGTA TGAA CGTA
357110 TGTT * 8 29/32 TGTT CGTC TGTT TGTT TGTT TGTT TGTT TATT
433056 AATA * 5 18/20 AATA AATA TATA AATA AAGA
440807 TGTA * 5 19/20 TGTA TGTG TGTA TGTA TGTA
476302 ATTA * 5 18/20 ATTA TTTA ATTA TTTA ATTA
490993 ATAA * 5 18/20 ATAA TAAA ATAA ATAA ATAA
576324 TTTG * 5 19/20 TTTG TTTG TTTG TTTG TTTT
748446 AATT * 5 18/20 AATT AATT GATT AATT AATA
1224563 TTAT * 5 18/20 TTAT TTAT TTAT ATAT ATAT
1469261 AACA * 5 18/20 AACA ATCA AACA AACG AACA
1525371 GTGG * 5 18/20 GTGG GTGT GTGG GTGT GTGG
-----------------------------------------------------------------------------
Total sequence length......................... 1531929
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-2 AATA-1 AATT-1 AACA-1 ATAA-1 ATTA-1 TAAA-1 TTAT-1
TTTG-1 TGTA-2 TGTT-1 GTGG-1
----------------------------------------------------------------------------
Genomic sequence...
gi|6320755|ref|NC_001137.1|| Saccharomyces cerevisiae chromosome V, complete chromosome sequence
Position Repeat Coverage Repeat
208814 TACG * 6 22/24 TACG TACG TACG TACG TATA TACG
402274 ATAA * 5 18/20 ATAA ATAA ATGA ATAC ATAA
526942 AATA * 5 18/20 AATA AATA AATA TATA TATA
538349 AATA * 5 18/20 AATA AATT AATA AATA AAAA
553269 TTAT * 6 24/24 TTAT TTAT TTAT TTAT TTAT TTAT
-----------------------------------------------------------------------------
Total sequence length......................... 576870
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 5
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AATA-2 ATAA-1 TACG-1 TTAT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|6321039|ref|NC_001138.1|| Saccharomyces cerevisiae chromosome VI, complete chromosome sequence
Position Repeat Coverage Repeat
55309 TTAT * 5 18/20 TTAT TTAC TTAT TTAG TTAT
76470 TATC * 5 18/20 TATC TATC TGTC TATT TATC
107803 ATGT * 5 18/20 ATGT ATGT ATGT GTGT GTGT
120944 AGAA * 5 18/20 AGAA ACAA TGAA AGAA AGAA
237314 ATTC * 5 18/20 ATTC ATTC ATTC ATTC ATCA
-----------------------------------------------------------------------------
Total sequence length......................... 270148
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 5
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
ATTC-1 ATGT-1 AGAA-1 TATC-1 TTAT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|6321173|ref|NC_001139.1|| Saccharomyces cerevisiae chromosome VII, complete chromosome sequence
Position Repeat Coverage Repeat
6694 GAAA * 5 18/20 GAAA GAAA GAAA TAAA GATA
121027 AAAG * 5 18/20 AAAG AAAG AAAA AAAA AAAG
156146 TATT * 6 22/24 TATT TATT TATT TATT TATT TAAA
428251 CTTT * 5 18/20 CTTT TTTT TTTT CTTT CTTT
583719 AGGC * 5 18/20 AGGC AGGC TGGA AGGC AGGC
607499 AAAT * 5 18/20 AAAT AAAT AAAT AAAT AATA
640792 TCAT * 5 18/20 TCAT TCAT TCAT TCAT TTAC
738139 TTTC * 5 18/20 TTTC CTTC GTTC TTTC TTTC
741888 TATC * 8 31/32 TATC TATC TATC TATC TATT TATC TATC TATC
983372 TTTC * 5 18/20 TTTC TTTC TTTC TTTC TGTT
-----------------------------------------------------------------------------
Total sequence length......................... 1090936
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 10
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 AAAG-1 AGGC-1 TATT-1 TATC-1 TTTC-2 TCAT-1 GAAA-1
CTTT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|6862570|ref|NC_001140.2|| Saccharomyces cerevisiae chromosome VIII, complete chromosome sequence
Position Repeat Coverage Repeat
56602 AAGA * 5 18/20 AAGA AAGA AAGA AAAA AATA
122865 TTTC * 5 18/20 TTTC TTTC TTTC TTTC TTCA
124023 TAAA * 5 18/20 TAAA TATA TAAA TAAA TAAG
212730 TGAT * 5 18/20 TGAT TGAT TGAT TGAT TGTA
214728 TGAT * 5 18/20 TGAT TGAT TGAT TGAT TGTA
351211 AAGA * 5 18/20 AAGA AAGA AAGT AACA AAGA
472500 AATA * 5 18/20 AATA AATA GATA AATA AATC
528862 TTTA * 5 18/20 TTTA TTTA TTTA TTTA ATTT
-----------------------------------------------------------------------------
Total sequence length......................... 562639
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 8
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AATA-1 AAGA-2 TAAA-1 TTTA-1 TTTC-1 TGAT-2
----------------------------------------------------------------------------
Genomic sequence...
gi|6322016|ref|NC_001141.1|| Saccharomyces cerevisiae chromosome IX, complete chromosome sequence
Position Repeat Coverage Repeat
195340 ATAA * 5 18/20 ATAA ATAT ATAA ATAT ATAA
370638 TTTA * 5 18/20 TTTA TTTA TTTA TTTC TTTT
-----------------------------------------------------------------------------
Total sequence length......................... 439885
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 2
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
ATAA-1 TTTA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|6322236|ref|NC_001142.1|| Saccharomyces cerevisiae chromosome X, complete chromosome sequence
Position Repeat Coverage Repeat
41608 AAAG * 5 18/20 AAAG AAAG AAAG ACAT AAAG
56321 TAAA * 5 18/20 TAAA TAAA TAAA TAAA TAGG
357628 TTAT * 6 22/24 TTAT TTAT TTAT TTAT TTAT TTTG
496719 TAAA * 5 18/20 TAAA TATA TACA TAAA TAAA
550150 AGAA * 5 18/20 AGAA AGAA AGAG AGAA AGAG
580014 ATAC * 5 18/20 ATAC ATAT ATAC ATAC ATAT
641413 TACA * 6 22/24 TACA TACA TACA TACA AATA TACA
703192 TGTT * 5 18/20 TGTT TGTT TATT TGTT TATT
-----------------------------------------------------------------------------
Total sequence length......................... 745440
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 8
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAG-1 ATAC-1 AGAA-1 TAAA-2 TACA-1 TTAT-1 TGTT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|6322623|ref|NC_001143.1|| Saccharomyces cerevisiae chromosome XI, complete chromosome sequence
Position Repeat Coverage Repeat
36506 AAAT * 5 18/20 AAAT AAAA AAAT AAAA AAAT
42287 TATG * 5 18/20 TATG TATA TATA TATG TATG
168998 AATA * 9 33/36 AATA AATA AATA AATA AATA AATA AATA AATA GTAA
169037 AATA * 5 19/20 AATA AATA ACTA AATA AATA
171172 TTTC * 7 26/28 TTTC TTTC TTTC TTTC TTTC TTTT TATC
325963 ATAA * 5 18/20 ATAA ATAA ATAA ATAA AAAT
334764 AATA * 5 18/20 AATA AAAA AATA AAAA AATA
360482 AAAT * 6 22/24 AAAT AAAT AAAT AAGT GAAT AAAT
363984 ATAA * 6 22/24 ATAA ATAA ATAA ATAA ATAA ATGC
428396 AATA * 8 29/32 AATA AATA AATA AATA AATA AATA AGAA AAAA
523000 ACAT * 5 18/20 ACAT ACAT ACAT ACAC AAAT
663255 AAAG * 6 22/24 AAAG AAAG AAAG AAAG AAAA AAAA
-----------------------------------------------------------------------------
Total sequence length......................... 666445
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 12
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-2 AAAG-1 AATA-4 ATAA-2 ACAT-1 TATG-1 TTTC-1
----------------------------------------------------------------------------
Genomic sequence...
gi|6322960|ref|NC_001144.1|| Saccharomyces cerevisiae chromosome XII, complete chromosome sequence
Position Repeat Coverage Repeat
14397 TATT * 5 18/20 TATT TATT CATT TTTT TATT
84328 GGAA * 5 19/20 GGAA GGAA GGAA GGAA GCAA
87291 TTAT * 5 18/20 TTAT TTAT TTAT TTAT ACAT
88200 TTAT * 6 22/24 TTAT TTAT TCAT TTAC TTAT TTAT
142938 ATAA * 5 19/20 ATAA ATAA GTAA ATAA ATAA
146051 TATG * 5 18/20 TATG TACG TATG TATG TGTG
248517 ACAT * 5 18/20 ACAT ACAT ATAT ATAT ACAT
257882 ACAT * 5 18/20 ACAT ACAT ACAT ACAT ATAG
735021 TAAA * 5 18/20 TAAA TAAA TAAA TAAA CAAT
829422 TATG * 5 18/20 TATG TATG TATG TGTA TATG
971731 TCAT * 5 18/20 TCAT TTAT TTAT TCAT TCAT
1015511 ACAT * 6 22/24 ACAT ACAT ACAC ACAT ACAT ACAC
1065047 GGTG * 5 18/20 GGTG TGTG GGTG TGTG GGTG
-----------------------------------------------------------------------------
Total sequence length......................... 1078172
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 13
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
ATAA-1 ACAT-3 TAAA-1 TATT-1 TATG-2 TTAT-2 TCAT-1 GGAA-1
GGTG-1
----------------------------------------------------------------------------
Genomic sequence...
gi|6323501|ref|NC_001145.1|| Saccharomyces cerevisiae chromosome XIII, complete chromosome sequence
Position Repeat Coverage Repeat
49848 TTTC * 5 19/20 TTTC TTTC TTTC TTTC GTTC
101173 TTTA * 5 18/20 TTTA TATA TTTA TATA TTTA
233276 TATT * 10 37/40 TATT TATT TATT TATT TACT TATT TATT CATT TATT CATT
251057 GTAT * 5 19/20 GTAT GTAT GTAT GTAT GCAT
349737 AAAG * 6 23/24 AAAG AAAG AGAG AAAG AAAG AAAG
416085 TACA * 5 18/20 TACA TATA TACA CACA TACA
625419 AAAG * 5 18/20 AAAG AAAA AAAG AAAA AAAG
696654 AAAT * 5 18/20 AAAT AAAT AAAT AAAC AAAG
758905 TATG * 7 27/28 TATG TATG TATG TATG TATG TATG TAGG
859016 AATA * 5 19/20 AATA AATA AACA AATA AATA
-----------------------------------------------------------------------------
Total sequence length......................... 924430
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 10
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 AAAG-2 AATA-1 TATT-1 TATG-1 TACA-1 TTTA-1 TTTC-1
GTAT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|6323989|ref|NC_001146.1|| Saccharomyces cerevisiae chromosome XIV, complete chromosome sequence
Position Repeat Coverage Repeat
33227 ATTT * 5 18/20 ATTT TTTT ATTT TTTT ATTT
135875 ATAC * 8 30/32 ATAC ATAC ATAC ATAC ATAC ATAC ATAT ATAT
209012 TCAT * 5 18/20 TCAT TCAT TCAT TGAT TCCT
326648 ATAC * 5 19/20 ATAC ATAC ATAC ATAC ATAT
337790 TAAT * 5 19/20 TAAT TAAT TAAT TAAT TGAT
397700 TATG * 5 19/20 TATG TATG TATG TATG TATA
402550 TTAT * 6 22/24 TTAT GTAT TTAT TTAT TTAT TTAG
413425 ATTT * 5 18/20 ATTT ATTT CTTT TTTT ATTT
416859 TAAA * 5 18/20 TAAA TAAA TAAT TTAA TAAA
427020 ATAC * 5 18/20 ATAC ATAC ACAC ATAC ATGC
642509 AAAC * 5 18/20 AAAC AAAC GAAA AAAC AAAC
652357 TGTA * 5 18/20 TGTA TGTA TATA TGTA TATA
764512 ATGA * 5 18/20 ATGA ATGA ATGA TTGT ATGA
-----------------------------------------------------------------------------
Total sequence length......................... 784328
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 13
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAC-1 ATAC-3 ATTT-2 ATGA-1 TAAA-1 TAAT-1 TATG-1 TTAT-1
TGTA-1 TCAT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|6324406|ref|NC_001147.1|| Saccharomyces cerevisiae chromosome XV, complete chromosome sequence
Position Repeat Coverage Repeat
94739 TATG * 5 18/20 TATG TATA TATG TATA TATG
106334 TATG * 5 18/20 TATG TATA TACG TATG TATG
126941 TTAT * 5 18/20 TTAT TTAT TCAA TTAT TTAT
162163 GTAT * 5 18/20 GTAT ATAT ATAT GTAT GTAT
296594 TAAA * 5 19/20 TAAA TGAA TAAA TAAA TAAA
518139 AGAA * 5 18/20 AGAA GGAA AGAA ATAA AGAA
672504 TTTC * 5 18/20 TTTC TTGC TTTC TTCC TTTC
816943 CTTT * 5 18/20 CTTT CTTT CTTT CTTT TTTA
1006845 ATAA * 5 18/20 ATAA ATAA ATAA ATGA AAAA
1039464 ATTC * 5 18/20 ATTC ATTC ATTC ATTC TTTT
-----------------------------------------------------------------------------
Total sequence length......................... 1091283
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 10
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
ATAA-1 ATTC-1 AGAA-1 TAAA-1 TATG-2 TTAT-1 TTTC-1 GTAT-1
CTTT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|6324971|ref|NC_001148.1|| Saccharomyces cerevisiae chromosome XVI, complete chromosome sequence
Position Repeat Coverage Repeat
138292 TTTA * 6 22/24 TTTA TTTA TTTA TTTA TTTT TTTT
195463 GTAT * 6 22/24 GTAT GTAT GTAT GTAC GTAC GTAT
250627 AATA * 5 18/20 AATA AATA AATA TATA AAAA
279839 TTTC * 5 18/20 TTTC TTTC TTTG TTTT TTTC
393056 AGAA * 5 18/20 AGAA AGGA AGAA AAAA AGAA
499324 AAAT * 5 18/20 AAAT ACAT AAAT ATAT AAAT
665530 ATTT * 5 19/20 ATTT TTTT ATTT ATTT ATTT
687880 TAGG * 5 19/20 TAGG TAGA TAGG TAGG TAGG
711353 CATA * 5 18/20 CATA CATA CATA TATA TATA
771362 TTCT * 6 22/24 TTCT TTCT TTTT TTCT TTCT TTTT
773770 ATAG * 5 18/20 ATAG ATAG ATAG ATAG ATGC
776932 TTTC * 5 19/20 TTTC TTTC TTTC TTTC TTTG
777088 ATAA * 5 19/20 ATAA ATAA ATAA ATAA ATAT
810901 AAAT * 5 18/20 AAAT AAAT AAAT AAAA AAAA
813121 ATGC * 5 18/20 ATGC ATGC ATGC ATGC CTTC
-----------------------------------------------------------------------------
Total sequence length......................... 948061
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 15
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-2 AATA-1 ATAA-1 ATAG-1 ATTT-1 ATGC-1 AGAA-1 TAGG-1
TTTA-1 TTTC-2 TTCT-1 GTAT-1 CATA-1
----------------------------------------------------------------------------
Tetra-Nucleotide repeats in Yeast Complete Genome sequences
Minimum tetra-nucleotide repeating units = 5 (allowing a maximum of 10% mismatch)
Total 16 sequences searched with a total of 12069248 bp length
Total 148 repeats covering 2950 / 3232 base pairs
Length distribution of all tetra-nucleotide repeats
----------------------------------------------------------------------------------------------------------------------------------------------------
No. of repeat units 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 >=25
total repeats 118 18 2 5 1 1 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0
----------------------------------------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tetra-nucleotide repeat classes
8-AAAT 12-AATA 8-ATAA 8-TAAA 3-ATTT 6-TTTA 8-TTAT 4-TATT = 57
5-AAAG 2-AAGA 5-AGAA 1-GAAA 3-CTTT 8-TTTC 1-TTCT 0-TCTT = 25
3-AAAC 1-AACA 1-ACAA 1-CAAA 0-GTTT 2-TTTG 0-TTGT 2-TGTT = 10
1-AATT 1-ATTA 0-TTAA 1-TAAT = 3
0-AATG 1-ATGA 0-TGAA 0-GAAT 0-CATT 2-ATTC 0-TTCA 3-TCAT = 6
0-AATC 0-ATCA 0-TCAA 0-CAAT 0-GATT 0-ATTG 0-TTGA 2-TGAT = 2
0-AAGT 0-AGTA 0-GTAA 0-TAAG 0-ACTT 0-CTTA 0-TTAC 0-TACT = 0
0-AAGG 0-AGGA 1-GGAA 0-GAAG 0-CCTT 0-CTTC 0-TTCC 0-TCCT = 1
0-AAGC 0-AGCA 0-GCAA 0-CAAG 0-GCTT 0-CTTG 0-TTGC 0-TGCT = 0
0-AACT 0-ACTA 0-CTAA 0-TAAC 0-AGTT 0-GTTA 0-TTAG 0-TAGT = 0
0-AACG 0-ACGA 0-CGAA 0-GAAC 0-CGTT 0-GTTC 0-TTCG 0-TCGT = 0
0-AACC 0-ACCA 0-CCAA 0-CAAC 0-GGTT 0-GTTG 0-TTGG 0-TGGT = 0
1-ATAG 0-TAGA 0-AGAT 0-GATA 0-CTAT 3-TATC 0-ATCT 0-TCTA = 4
7-ATAC 3-TACA 6-ACAT 1-CATA 4-GTAT 7-TATG 1-ATGT 3-TGTA = 32
0-ATGG 0-TGGA 0-GGAT 0-GATG 0-CCAT 0-CATC 0-ATCC 0-TCCA = 0
1-ATGC 0-TGCA 0-GCAT 0-CATG = 1
0-ATCG 0-TCGA 0-CGAT 0-GATC = 0
0-AGAC 0-GACA 0-ACAG 0-CAGA 0-GTCT 0-TCTG 0-CTGT 0-TGTC = 0
1-AGTG 0-GTGA 0-TGAG 0-GAGT 0-CACT 0-ACTC 0-CTCA 0-TCAC = 1
0-AGTC 0-GTCA 0-TCAG 0-CAGT 0-GACT 0-ACTG 0-CTGA 0-TGAC = 0
0-AGGT 0-GGTA 0-GTAG 1-TAGG 0-ACCT 0-CCTA 0-CTAC 0-TACC = 1
0-AGGG 0-GGGA 0-GGAG 0-GAGG 0-CCCT 0-CCTC 0-CTCC 0-TCCC = 0
1-AGGC 0-GGCA 0-GCAG 0-CAGG 0-GCCT 0-CCTG 0-CTGC 0-TGCC = 1
0-AGCT 0-GCTA 0-CTAG 0-TAGC = 0
0-AGCG 0-GCGA 0-CGAG 0-GAGC 0-CGCT 0-GCTC 0-CTCG 0-TCGC = 0
0-AGCC 0-GCCA 0-CCAG 0-CAGC 0-GGCT 0-GCTG 0-CTGG 0-TGGC = 0
0-ACGT 0-CGTA 0-GTAC 1-TACG = 1
0-ACGG 0-CGGA 0-GGAC 0-GACG 0-CCGT 0-CGTC 0-GTCC 0-TCCG = 0
0-ACGC 0-CGCA 0-GCAC 0-CACG 0-GCGT 0-CGTG 0-GTGC 0-TGCG = 0
0-ACCG 0-CCGA 0-CGAC 0-GACC 0-CGGT 0-GGTC 0-GTCG 0-TCGG = 0
0-ACCC 0-CCCA 0-CCAC 1-CACC 0-GGGT 1-GGTG 1-GTGG 0-TGGG = 3
0-GGGC 0-GGCG 0-GCGG 0-CGGG 0-GCCC 0-CCCG 0-CCGC 0-CGCC = 0
0-GGCC 0-GCCG 0-CCGG 0-CGGC = 0
----------------------------------------------------------------------------------------------------
----------------------------------------------------------------------------------------------------
Tetra-nucleotide repeats longer than 40 bp (repeated 10 or more times)
1-AAAT 0-AATA 0-ATAA 0-TAAA 0-ATTT 0-TTTA 0-TTAT 1-TATT = 2
0-AAAG 0-AAGA 0-AGAA 0-GAAA 0-CTTT 0-TTTC 0-TTCT 0-TCTT = 0
0-AAAC 0-AACA 0-ACAA 0-CAAA 0-GTTT 1-TTTG 0-TTGT 0-TGTT = 1
0-AATT 0-ATTA 0-TTAA 0-TAAT = 0
0-AATG 0-ATGA 0-TGAA 0-GAAT 0-CATT 0-ATTC 0-TTCA 0-TCAT = 0
0-AATC 0-ATCA 0-TCAA 0-CAAT 0-GATT 0-ATTG 0-TTGA 0-TGAT = 0
0-AAGT 0-AGTA 0-GTAA 0-TAAG 0-ACTT 0-CTTA 0-TTAC 0-TACT = 0
0-AAGG 0-AGGA 0-GGAA 0-GAAG 0-CCTT 0-CTTC 0-TTCC 0-TCCT = 0
0-AAGC 0-AGCA 0-GCAA 0-CAAG 0-GCTT 0-CTTG 0-TTGC 0-TGCT = 0
0-AACT 0-ACTA 0-CTAA 0-TAAC 0-AGTT 0-GTTA 0-TTAG 0-TAGT = 0
0-AACG 0-ACGA 0-CGAA 0-GAAC 0-CGTT 0-GTTC 0-TTCG 0-TCGT = 0
0-AACC 0-ACCA 0-CCAA 0-CAAC 0-GGTT 0-GTTG 0-TTGG 0-TGGT = 0
0-ATAG 0-TAGA 0-AGAT 0-GATA 0-CTAT 0-TATC 0-ATCT 0-TCTA = 0
0-ATAC 1-TACA 0-ACAT 0-CATA 0-GTAT 0-TATG 0-ATGT 0-TGTA = 1
0-ATGG 0-TGGA 0-GGAT 0-GATG 0-CCAT 0-CATC 0-ATCC 0-TCCA = 0
0-ATGC 0-TGCA 0-GCAT 0-CATG = 0
0-ATCG 0-TCGA 0-CGAT 0-GATC = 0
0-AGAC 0-GACA 0-ACAG 0-CAGA 0-GTCT 0-TCTG 0-CTGT 0-TGTC = 0
0-AGTG 0-GTGA 0-TGAG 0-GAGT 0-CACT 0-ACTC 0-CTCA 0-TCAC = 0
0-AGTC 0-GTCA 0-TCAG 0-CAGT 0-GACT 0-ACTG 0-CTGA 0-TGAC = 0
0-AGGT 0-GGTA 0-GTAG 0-TAGG 0-ACCT 0-CCTA 0-CTAC 0-TACC = 0
0-AGGG 0-GGGA 0-GGAG 0-GAGG 0-CCCT 0-CCTC 0-CTCC 0-TCCC = 0
0-AGGC 0-GGCA 0-GCAG 0-CAGG 0-GCCT 0-CCTG 0-CTGC 0-TGCC = 0
0-AGCT 0-GCTA 0-CTAG 0-TAGC = 0
0-AGCG 0-GCGA 0-CGAG 0-GAGC 0-CGCT 0-GCTC 0-CTCG 0-TCGC = 0
0-AGCC 0-GCCA 0-CCAG 0-CAGC 0-GGCT 0-GCTG 0-CTGG 0-TGGC = 0
0-ACGT 0-CGTA 0-GTAC 0-TACG = 0
0-ACGG 0-CGGA 0-GGAC 0-GACG 0-CCGT 0-CGTC 0-GTCC 0-TCCG = 0
0-ACGC 0-CGCA 0-GCAC 0-CACG 0-GCGT 0-CGTG 0-GTGC 0-TGCG = 0
0-ACCG 0-CCGA 0-CGAC 0-GACC 0-CGGT 0-GGTC 0-GTCG 0-TCGG = 0
0-ACCC 0-CCCA 0-CCAC 0-CACC 0-GGGT 0-GGTG 0-GTGG 0-TGGG = 0
0-GGGC 0-GGCG 0-GCGG 0-CGGG 0-GCCC 0-CCCG 0-CCGC 0-CGCC = 0
0-GGCC 0-GCCG 0-CCGG 0-CGGC = 0
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Total repeats longer than 40 bp = 4
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© Division of Biochemical Sciences, National Chemical Laboratory, Pune 411008, INDIA