Tri-Nucleotide Repeats in Yeast Complete Genome Sequence
Tri-Nucleotide Repeats in Yeast Complete Genome Sequences
Genomic sequence
gi|6319247|ref|NC_001133.1|| Saccharomyces cerevisiae chromosome I, complete chromosome sequence
Position Repeat Coverage Repeat
77492 AAG * 7 19/21 AAG GCG AAG AAG AAG AAG AAG
77514 AGA * 11 30/33 AGA AGA AGA AGA AGA AGA AGA AGA AGA AAG AGC
113050 GTT * 16 44/48 GTT GTT GTT GTT GTT GTT GTT GTT GTT ATT GTT GTT ATT GTT GTT ATC
113285 TGC * 7 19/21 TGC TGC TGT TGC TGC TGT TGC
116479 ATG * 7 19/21 ATG ATG ATG GTG ACG ATG ATG
124924 CAA * 8 22/24 CAA CAA CAT CAA CAA CAT CAA CAA
132296 TGA * 7 19/21 TGA CGA TGA TGA TGA TGA CGA
192282 TAC * 11 30/33 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC ATA
193974 ATA * 8 23/24 ATA ATA ATA ATA ATA ATA ATA ATG
194000 GAT * 9 25/27 GAT GAT GAT TAT GAT GAT GAT GAT GAA
220630 CTG * 7 19/21 CTG CTG CTG CTG CTG CTA TTG
220654 TTG * 7 19/21 TTG TTG TTG TTG TTG TTT TGG
225381 GAA * 10 27/30 GAA GAA GAA GAA GAA GAA GAG GAA CAA CAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 230203
Minimum Tri-Nucleotide repeat units........... 7
Total number of repeats detected.............. 13
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
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Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGA 1 0 1 0 0 0 0 0 0 0 0 0 0
TAC 1 0 1 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAA 1 0 1 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 0 0 0 1 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
1 AAG + 1 AGA + 1 GAA + 0 CTT + 0 TTC + 0 TCT = 3
0 AAC + 0 ACA + 1 CAA + 1 GTT + 1 TTG + 0 TGT = 3
1 ATG + 1 TGA + 1 GAT + 0 CAT + 0 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 1 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 1 CTG + 1 TGC = 2
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|6319354|ref|NC_001134.1|| Saccharomyces cerevisiae chromosome II, complete chromosome sequence
Position Repeat Coverage Repeat
48468 TTC * 11 30/33 TTC TTC TTC TTC TTT TTC TTG TTC TTC TTC TTT
68277 TTA * 28 76/84 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTG TTA TTT TGG TGG TTC CTA
68669 ATT * 7 19/21 ATT ATT ATT GAT ATT ATT ATT
72059 ACA * 7 19/21 ACA ACA ACA ACA ATA ACA GCA
72341 ACA * 22 62/66 ACA ACA ACA ACA ACA ACA GCA ACA ACA ACA ACA ACA ACA ACA ACA ACA GCA ACA ACA ACA ACA ATC
73006 TAT * 7 19/21 TAT TAC TAT TAT TGT TAT TAT
119943 CTT * 8 22/24 CTT CTT CTT CTT CTT CTT CTG CGT
133227 GAT * 8 22/24 GAT GAA GAT GAT GAG GAT GAT GAT
166324 TAA * 8 22/24 TAA TAA TAG TAA TAG TAA TAA TAA
166351 TAA * 15 41/45 TAA TAA TAA TAA AAA TAA TAA TAA TAA TCA TAA TAA TAA TAA TCT
205705 GAA * 7 19/21 GAA GAG GAA GAG GAA GAA GAA
205729 GAA * 11 30/33 GAA GAA GAA GAA GAG GAA GAA GAA GAA GAA GGG
272493 CAT * 12 33/36 CAT CTT CAT CAT CAT CAT CAT CAT CAT CAT CTT CGT
299444 AAG * 7 19/21 AAG AAG ATG AAG AAG ACG AAG
334916 AGC * 7 19/21 AGC AGC AGC GGC AGC AGC GGC
334994 AGC * 7 19/21 AGC AGC AGC AGC AGC TGC TGC
412360 GGT * 7 19/21 GGT GGT GCT GCT GGT GGT GGT
420332 GTA * 8 22/24 GTA GTA GTA GTA GTA GTA GTA TTG
426042 AAT * 8 22/24 AAT AAT GAT AAT AGT AAT AAT AAT
455621 ACA * 7 19/21 ACA ACC ACA ACA GCA ACA ACA
463979 TGT * 32 88/96 TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGC TGT TGT TGT TGT TGT TGT TGT GCC TGC GCC TGT
465640 CTG * 7 19/21 CTG CTG TTG CTG TTG CTG CTG
465661 TTG * 9 25/27 TTG TTG TTG CTG TTG TTG TTG CTG TTG
465764 TTG * 8 22/24 TTG TTG TTG TTG CTG TTG TAG TTG
495124 GAT * 7 19/21 GAT GGT GAT GAT GGT GAT GAT
505173 CAG * 7 19/21 CAG CAA CAG CAG CAA CAG CAG
505194 CAA * 8 22/24 CAA CAA CAA CAA CAG CAA CAT CAA
541405 ATC * 30 81/90 ATC ATC ATC ATT GTC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATT AAT ATT GTT GTC
541523 TTA * 7 19/21 TTA TTG TTA TTA TTA TTA ATA
541564 ATT * 12 34/36 ATT TTT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATC
648686 AAC * 8 22/24 AAC AAC AAC AAC AGC AAC AAC AAT
649297 CAG * 12 33/36 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAA CAG GAT
725216 AAT * 7 19/21 AAT AAT AAT CAT AAC AAT AAT
760641 AGA * 8 22/24 AGA GGA AGA AGA AGA AGA AGA CGA
779804 ACA * 10 28/30 ACA ACA ACA ACA ACA ACA ACA ACA ACA AAC
780198 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CAA
780303 CAG * 7 19/21 CAG CAG CAG CAG CAT CAG CAA
780324 CAA * 8 22/24 CAA CAA CAA CAA CAA CAG CAA CAG
780354 CAG * 7 19/21 CAG CAA CAG CAA CAG CAG CAG
780375 CAA * 11 30/33 CAA CAA CAA CAG CAA CAA CAA CAA CAA CAG CAG
780408 CAG * 7 20/21 CAG CAG CAG CAG CAG CAG CAA
812742 GTG * 7 19/21 GTG GCG GTG GTG GTA GTG GTG
-----------------------------------------------------------------------------------------
Total sequence length......................... 813140
Minimum Tri-Nucleotide repeat units........... 7
Total number of repeats detected.............. 42
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
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Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 2 2 0 0 0 0 0 0 0 0 0 0 0
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 2 1 1 0 0 0 0 0 0 0 0 0 0
ATC 1 0 0 0 0 0 0 0 1 0 0 0 0
AGA 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 2 0 0 0 0 0 0 0 0 0 0 0
ACA 4 2 1 0 0 0 1 0 0 0 0 0 0
TAA 2 1 0 1 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 2 1 0 0 0 0 0 0 1 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TTC 1 0 1 0 0 0 0 0 0 0 0 0 0
TGT 1 0 0 0 0 0 0 0 0 1 0 0 0
GAA 2 1 1 0 0 0 0 0 0 0 0 0 0
GAT 2 2 0 0 0 0 0 0 0 0 0 0 0
GTA 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 3 2 1 0 0 0 0 0 0 0 0 0 0
CAT 1 0 1 0 0 0 0 0 0 0 0 0 0
CAG 6 5 1 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
2 AAT + 0 ATA + 2 TAA + 2 ATT + 2 TTA + 1 TAT = 9
1 AAG + 1 AGA + 2 GAA + 1 CTT + 1 TTC + 0 TCT = 6
1 AAC + 4 ACA + 3 CAA + 0 GTT + 2 TTG + 1 TGT = 11
0 ATG + 0 TGA + 2 GAT + 1 CAT + 1 ATC + 0 TCA = 4
0 AGT + 1 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
2 AGC + 0 GCA + 6 CAG + 0 GCT + 1 CTG + 0 TGC = 9
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 1 GGT + 1 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|6319780|ref|NC_001135.1|| Saccharomyces cerevisiae chromosome III, complete chromosome sequence
Position Repeat Coverage Repeat
127775 TGT * 8 22/24 TGT TGT TGT TGT TGT TGT TAT TGC
139099 TTC * 7 21/21 TTC TTC TTC TTC TTC TTC TTC
163941 TGC * 7 19/21 TGC TGC TGC TGC TGC TTC TTC
210345 TCT * 8 22/24 TCT TCT TCT TCT GCT TCT TCT GCT
233620 AAG * 13 36/39 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG CTG ATG
262940 TGC * 8 22/24 TGC TGG TGC TGC TTC TGC TGC TGC
262966 CTG * 7 19/21 CTG CTG CTG CTT CTG CTT CTG
269917 CAT * 7 19/21 CAT CAT CAT CAT CAT CAT TCT
270198 TCA * 11 30/33 TCA TCA TCA TCA TCA TCA TCA TCA TCA TTG GCA
281940 ACA * 7 19/21 ACA ACA ACA ACA ACA ACA AAG
281962 CAA * 7 19/21 CAA CAA CAA CAA CAA CAT CAT
290281 TAT * 7 21/21 TAT TAT TAT TAT TAT TAT TAT
-----------------------------------------------------------------------------------------
Total sequence length......................... 315339
Minimum Tri-Nucleotide repeat units........... 7
Total number of repeats detected.............. 12
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAG 1 0 0 1 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TCA 1 0 1 0 0 0 0 0 0 0 0 0 0
TCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 1
1 AAG + 0 AGA + 0 GAA + 0 CTT + 1 TTC + 1 TCT = 3
0 AAC + 1 ACA + 1 CAA + 0 GTT + 0 TTG + 1 TGT = 3
0 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 1 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 1 CTG + 2 TGC = 3
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|6319952|ref|NC_001136.1|| Saccharomyces cerevisiae chromosome IV, complete chromosome sequence
Position Repeat Coverage Repeat
475 ACC * 7 19/21 ACC ACC ACT ACC ACC ACC GCC
149015 AGA * 9 25/27 AGA AGA AGA AGA AGA AGA AGA AGA AAT
161482 ATT * 8 23/24 ATT GTT ATT ATT ATT ATT ATT ATT
161669 TTA * 7 19/21 TTA TTG TTA ATA TTA TTA TTA
168459 CAA * 10 27/30 CAA CAA CAG CAA CAA CAG CAA CAA CAA CAG
168558 CAA * 7 19/21 CAA CAA CAA CAA CAA CTA CAG
181923 TCT * 8 22/24 TCT TCT TCT TCT TCT TCT TCA TCG
182505 TCT * 7 20/21 TCT TCT TCT TCT TCT TCA TCT
182762 TTC * 7 19/21 TTC CTC TTC CTC TTC TTC TTC
194171 CTC * 9 25/27 CTC CGC CTC CGC CTC CTC CTC CTC CTC
230459 GAA * 7 20/21 GAA GAA GAA AAA GAA GAA GAA
271800 TGT * 9 25/27 TGT TGT TGC TGT TGT TGT TGT TGT TGG
331099 AGC * 8 22/24 AGC AGG AGC AGC AAC AGC AGC AGC
332373 TGA * 7 19/21 TGA TGA TGA ATA TGA TGA TGA
367505 GTT * 7 19/21 GTT GCT GTT GCT GTT GTT GTT
390408 TTA * 10 27/30 TTA ATA TTA TTA CTA TTA TTA TTA TTA TTG
390438 TTG * 7 19/21 TTG TTG TTG TTG TTA TTG TTA
390459 TTA * 22 60/66 TTA TTA TTG TTA TTA TTA TTA TTG TTA TTA TTA TTA TTG TTA TTA TTA TTA TTG CTA TTA TTG TTA
399050 AGA * 7 19/21 AGA AGA AGA AGA CGA AGA AGG
431267 TGC * 7 19/21 TGC TGA TAC TGC TGC TGC TGC
441264 TGT * 8 22/24 TGT TGT TGT TGT TGT TGT TGC CGT
441302 TTA * 8 22/24 TTA TTG TTA TTA TTA TTA TTA TTG
441342 TGT * 7 19/21 TGT TGT TGT TGT TCT CGT TGT
561577 TCG * 7 19/21 TCG TCA TCG TCG TCG TTG TCG
573577 GAA * 8 23/24 GAA GAA GAA AAA GAA GAA GAA GAA
584470 GAA * 7 19/21 GAA GAA GAA GAA GAA GAT GAT
584611 GAC * 7 19/21 GAC GAC GAC GAC GAT GAT GAC
586539 TTG * 7 19/21 TTG CTG TTG TTG CTG TTG TTG
604235 TGA * 19 52/57 TGA TGA TGA TGA TGA TGA TGA TGA TGA CGA TGA TGA AGA TGA GGA TGA CGA AGA TGA
608423 ATT * 8 22/24 ATT ATT ATT GTT ATT ATT ATT ACT
639490 AAT * 7 19/21 AAT AAT ACT AAT AAT AAT GAT
644489 TTC * 7 19/21 TTC TTC TTC CTC TTC TTC GTC
654332 CAA * 17 47/51 CAA CAA CAA CAA CAA CAA CAG CAA CAG CAA CAG CAA CAA CAG CAA CAA CAA
694834 CAG * 7 19/21 CAG CAG CAG CAG CAG CAG AAC
747075 ACA * 9 26/27 ACA GCA ACA ACA ACA ACA ACA ACA ACA
747489 ACA * 10 27/30 ACA ACA ACA ACA ACA ACA ACA GCA GCA GCA
747519 GCA * 7 19/21 GCA GCA ACA GCA GCA ACA GCA
766976 TCA * 7 19/21 TCA TCA TCA TCA TCA TCA CTA
778727 TAT * 7 19/21 TAT TAT TAG TAT TAT TAT TGT
778751 TAT * 28 77/84 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT ATT ATT ATT AAT
801670 TTC * 15 42/45 TTC CTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TGA
810722 CAT * 16 44/48 CAT CAT CAT CAT CAT CAT CAT CAT TAT CAT CAT CGT CGT CAT CAT CGT
812784 AAG * 12 34/36 AAG AAG AAG AAG AAG AAG AAG AAG GAT AAG AAG AAG
834004 TCA * 7 19/21 TCA TCG TCA TCA TCG TCA TCA
838059 AAT * 10 27/30 AAT AAT AAT AAT AAT AAT AAT AAC AAG AAC
864953 TAA * 8 22/24 TAA TAA TAA TAA TAA TAG TAA CAA
894570 TGT * 7 19/21 TGT TGT TAT TAT TGT TGT TGT
904840 ATC * 7 20/21 ATC ATC ATC ATC ATC ATA ATC
923039 CTG * 8 22/24 CTG CTG CTG CTG CTG CTG TTG TTG
927602 GCA * 7 19/21 GCA GCA GCA GCA GCA GCC GCT
975168 ATT * 7 19/21 ATT ATC ATT ATT ATC ATT ATT
1038641 TCA * 20 54/60 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TTA TCA CCA TCA TCG TCA TCG TCA TCT CCA
1056062 CTG * 8 22/24 CTG CCG CTG CTG CTG CTG CCG CTG
1059915 GAA * 14 38/42 GAA GAA GAA GAA GAA GAA GAG GAA GAA GAA AAA GAG GAA GAT
1135046 TCA * 7 20/21 TCA TCA TCA TCA TCA TCA TCG
1167486 TTC * 7 19/21 TTC TTC TTC CTC TTC ATC TTC
1215040 CGT * 7 19/21 CGT CGT CAT CGT CGT CGT CGC
1223393 AAT * 8 22/24 AAT AAT ATT AAA AAT AAT AAT AAT
1239745 GAA * 7 19/21 GAA GAA GAA AAG GAA GAA GAA
1251247 CTG * 7 20/21 CTG CTG CTG GTG CTG CTG CTG
1290965 ATA * 21 59/63 ATA ATA AAA ATA ATA ATA ATA ATA ATA ATA ACA ATA ATA ATA ATA ATG ATA ATA ATA ATA GTA
1291120 GAT * 8 22/24 GAT AAT GAT GAC GAT GAT GAT GAT
1296734 ATA * 7 19/21 ATA ATA ATA ACA ATA ATA ATT
1346520 CTG * 8 22/24 CTG CTG CTG CTG TTG CTG TTG CTG
1405215 TCA * 7 19/21 TCA TCA TCA TCA TCA TCG TCT
1407779 GAT * 7 19/21 GAT GAT GGT GAT GAT GAT GTT
1412410 CCA * 13 36/39 CCA CCA CCA CCA CCA TCA CCA CCA TCA CCA CCA CCA TCA
1458146 GTT * 8 22/24 GTT GTT GTG GTT GTT GTG GTT GTT
1504915 TAT * 7 19/21 TAT TGT TAT TAC TAT TAT TAT
-----------------------------------------------------------------------------------------
Total sequence length......................... 1531929
Minimum Tri-Nucleotide repeat units........... 7
Total number of repeats detected.............. 69
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 3 2 1 0 0 0 0 0 0 0 0 0 0
AAG 1 0 1 0 0 0 0 0 0 0 0 0 0
ATA 2 1 0 0 0 1 0 0 0 0 0 0 0
ATT 3 3 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGA 2 2 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 2 1 1 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 3 2 0 0 0 0 0 0 1 0 0 0 0
TTA 4 2 1 0 0 0 1 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TTC 4 3 0 1 0 0 0 0 0 0 0 0 0
TGA 2 1 0 0 0 1 0 0 0 0 0 0 0
TGT 4 4 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 5 4 0 0 0 1 0 0 0 0 0 0 0
TCT 2 2 0 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAA 5 4 0 1 0 0 0 0 0 0 0 0 0
GAT 2 2 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 3 1 1 0 1 0 0 0 0 0 0 0 0
CAT 1 0 0 0 1 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 4 4 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CGT 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 0 0 1 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
3 AAT + 2 ATA + 1 TAA + 3 ATT + 4 TTA + 3 TAT = 16
1 AAG + 2 AGA + 5 GAA + 0 CTT + 4 TTC + 2 TCT = 14
0 AAC + 2 ACA + 3 CAA + 2 GTT + 2 TTG + 4 TGT = 13
0 ATG + 2 TGA + 2 GAT + 1 CAT + 1 ATC + 5 TCA = 11
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 1
1 AGC + 2 GCA + 1 CAG + 0 GCT + 4 CTG + 1 TGC = 9
0 ACG + 0 CGA + 1 GAC + 1 CGT + 0 GTC + 1 TCG = 3
1 ACC + 1 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|6320755|ref|NC_001137.1|| Saccharomyces cerevisiae chromosome V, complete chromosome sequence
Position Repeat Coverage Repeat
41606 ATC * 7 19/21 ATC ATC ATT ATC ATC ATC ATT
65313 AAT * 7 19/21 AAT AAT AAT AAT ATT AAT ACT
69798 TAA * 10 27/30 TAA TAA TAG TAA TAA TAA CAA TAA TAA TGA
79217 TCA * 8 22/24 TCA TCA TCA TCA TCA TCA TCT TCT
79241 TCT * 8 22/24 TCT TCT TCT TCT TCT TCC TCT ACT
81195 TTA * 19 52/57 TTA TTA TTA TTA TTA TTG TTA TTA TTA TTA TTA TTA TTA TTA TTG AGA TTA ATA TTA
83159 TGC * 8 22/24 TGC TGT TGC TGT TGC TGC TGC TGC
83183 TGT * 12 34/36 TGT TGT TGT TGT TGT TGC TGT TGT TGT TGT TGT TGG
142889 TAA * 9 25/27 TAA TAA TAA CAA TAA TAA TAG TAA TAA
142928 TAA * 28 76/84 TAA TAA TAG TAA CAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA CAA TAA TAA TAA TAT TAA TAA TAT TAA TAA TGT CAA
218897 TCA * 10 27/30 TCA TCA TCA TCA TCT TCA CCA TCA TCA TCG
219941 TCA * 20 54/60 TCA TCA TCA TCA TCA TCG TCA TCA TCA TCG TCA TCA TAA TCA TCA TCA TGA TCA TTA TCG
227345 CAT * 7 19/21 CAT CAT CAT TAT CAT CAT CAC
243765 TTA * 7 19/21 TTA TTA TTA CCA TTA TTA TTA
243786 TAT * 8 22/24 TAT TAT TAT TAT TAT TAT CAT CAT
245636 TTC * 10 27/30 TTC CTC TTT TTC TTC TTC TTC TTC TTC TAC
309001 TCA * 11 30/33 TCA TCA TCA TCA TCA TCA TCA TCA TCA CAA GCA
309056 TAT * 7 19/21 TAT TGT TAT TGT TAT TAT TAT
377446 CTG * 11 30/33 CTG CTG TTG CTG CTG TTG CTG CTG CTG CTG TTG
406356 TTG * 7 19/21 TTG TTG TTG CTG TTT TTG TTG
434305 TAT * 7 19/21 TAT TAT CAT TAC TAT TAT TAT
501304 TTC * 7 19/21 TTC ATC TTC TTC TTC TGC TTC
511641 GCC * 7 19/21 GCC GCT GCC GCC GCC GCT GCC
535290 TCA * 7 19/21 TCA TCA TCA TCT TCA TTA TCA
546342 CAA * 10 27/30 CAA CAA CAA CAA CAA CAA CAT CAG CAA CAG
-----------------------------------------------------------------------------------------
Total sequence length......................... 576870
Minimum Tri-Nucleotide repeat units........... 7
Total number of repeats detected.............. 25
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 3 1 1 0 0 0 0 0 1 0 0 0 0
TAT 3 3 0 0 0 0 0 0 0 0 0 0 0
TTA 2 1 0 0 0 1 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TTC 2 1 1 0 0 0 0 0 0 0 0 0 0
TGT 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 5 2 2 0 0 1 0 0 0 0 0 0 0
TCT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 0 1 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 3 TAA + 0 ATT + 2 TTA + 3 TAT = 9
0 AAG + 0 AGA + 0 GAA + 0 CTT + 2 TTC + 1 TCT = 3
0 AAC + 0 ACA + 1 CAA + 0 GTT + 1 TTG + 1 TGT = 3
0 ATG + 0 TGA + 0 GAT + 1 CAT + 1 ATC + 5 TCA = 7
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 1 CTG + 1 TGC = 2
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|6321039|ref|NC_001138.1|| Saccharomyces cerevisiae chromosome VI, complete chromosome sequence
Position Repeat Coverage Repeat
66230 ATG * 7 19/21 ATG ATG ACG ATG ATG ATG ATT
73353 ATT * 17 46/51 ATT GTT ATT ATT ATT ATT ATT ATT ATT ATT ATT GTT ATT ATT ACC ATT ATC
87978 TGC * 8 22/24 TGC TGC TGT TGC TGC TGC TGC TGT
88961 TTG * 8 22/24 TTG CTG TTG TTG TTG TTG TTG CTG
92723 TGA * 8 22/24 TGA TGA CGA TTA TGA TGA TGA TGA
160570 CAG * 8 23/24 CAG CAG CAG CAG CAG CAG CAG CAA
179304 TTC * 15 41/45 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTT TTC AAC TTC TAC
186205 AAT * 20 54/60 AAT AAT GAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAC AGT GCC
202278 TCA * 7 19/21 TCA TAA TCA TCA TCA TAA TCA
202471 CAT * 8 22/24 CAT AAT CAT CAT CGT CAT CAT CAT
224566 TCA * 7 19/21 TCA TCA TCA TCA TCA TCT TCG
224619 TTC * 8 22/24 TTC TTC TTC TTT TTC TTC TCC TTC
237123 ATA * 7 19/21 ATA ATA GTA ATA ATA GTA ATA
247211 ATA * 8 22/24 ATA ATA ATA ATA AAA ATA ATG ATA
-----------------------------------------------------------------------------------------
Total sequence length......................... 270148
Minimum Tri-Nucleotide repeat units........... 7
Total number of repeats detected.............. 14
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 0 0 0 0 1 0 0 0 0 0 0 0
ATA 2 2 0 0 0 0 0 0 0 0 0 0 0
ATT 1 0 0 0 1 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TTC 2 1 0 1 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 2 ATA + 0 TAA + 1 ATT + 0 TTA + 0 TAT = 4
0 AAG + 0 AGA + 0 GAA + 0 CTT + 2 TTC + 0 TCT = 2
0 AAC + 0 ACA + 0 CAA + 0 GTT + 1 TTG + 0 TGT = 1
1 ATG + 1 TGA + 0 GAT + 1 CAT + 0 ATC + 2 TCA = 5
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 1 CAG + 0 GCT + 0 CTG + 1 TGC = 2
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|6321173|ref|NC_001139.1|| Saccharomyces cerevisiae chromosome VII, complete chromosome sequence
Position Repeat Coverage Repeat
23643 ACG * 7 20/21 ACG ACG ACG ACG ACG ACC ACG
53131 TGC * 11 30/33 TGC TGC TGC TGC TGC TGC TGC TGT TGT TGC TGT
65724 TCA * 7 19/21 TCA TGA TCA TCG TCA TCA TCA
69256 GAA * 7 19/21 GAA GAA GAA GAC GAA GAA GAC
70160 ATG * 15 41/45 ATG ACG ATG ATG ATG ACG ATG ATG ATG ATG ACG ATG ATG ACG ATG
70205 ACG * 7 19/21 ACG ATG ACG ACG ACG ACG ATG
89161 CAA * 10 27/30 CAA CAA CAA CAG CAA CAA CAA AAA CAA CAC
112940 TCA * 7 19/21 TCA TCA TCG TCA TCG TCA TCA
134427 GAA * 7 20/21 GAA GAA GAT GAA GAA GAA GAA
143885 CAG * 7 20/21 CAG CAG CAG CAT CAG CAG CAG
169934 AAT * 7 20/21 AAT AAT AAT AAC AAT AAT AAT
192198 TTC * 7 19/21 TTC TTC TTC TTC TTC TTC CTT
224860 GTT * 7 19/21 GTT GTC GTT GTC GTT GTT GTT
224998 AGC * 7 19/21 AGC GGC AGC AGC AGC AGC ATC
245645 CAA * 14 40/42 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA ATA
280176 GTT * 11 30/33 GTT GCT GTT GTT GTT GTT GCT GTT GTT GCT GTT
348119 AAT * 18 49/54 AAT GAT AAT AAT AAT AAT AAT AAA AAT GAT AAT AAT AAT GAT AAT AAT AAT GAT
358115 AGA * 12 33/36 AGA AGA AAA AGA AGA AGA AGA AGA AAA AGA AGA AGG
378025 ATG * 8 22/24 ATG ATG ATG ATG ATG ATG ACG ATA
378063 GAT * 7 19/21 GAT GAT GAT GAC GCT GAT GAT
379008 CAG * 8 22/24 CAG CAA CAG CAG CAA CAG CAG CAG
379161 CAG * 10 28/30 CAG CAG CAG CAG CAG CAG CAG CAG CAC AAG
379247 ACA * 7 20/21 ACA ACA ACA ACT ACA ACA ACA
394457 GAT * 8 22/24 GAT GAT GAT GAT GAT GAT GAC GAC
416648 ATT * 7 20/21 ATT ACT ATT ATT ATT ATT ATT
429785 ACT * 7 19/21 ACT AGT ACT ACT ACT ACT ACC
431401 ATT * 20 55/60 ATT ATT ATT ATT ATT ACT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT TAT TAT
432279 TTG * 7 19/21 TTG TTG TTG TTG TAG TTG TTT
442165 AGA * 7 19/21 AGA GGA AGA AGT AGA AGA AGA
442189 AGA * 7 19/21 AGA GGA AGA AGT AGA AGA AGA
448879 GCT * 12 34/36 GCT GCT GCT GCT GCT GTT GCT GTT GCT GCT GCT GCT
459071 TAT * 7 19/21 TAT TAT TAT TAT TAC TAT TAC
467695 ATA * 18 49/54 ATA ATA ACA ATA ATA ATA ATA ATA ATA ATA ACA ATA ATA ATA ATA ACA GTA ATG
469230 TTG * 13 36/39 TTG TTT TTA TTG TTG TTG TTG TTG TTG TTG TTG TTA TTG
475213 CAG * 7 19/21 CAG CAG CAG ATG CAG CAG CAG
524238 ACG * 7 19/21 ACG ACG ACG ACG ACG ACG ATA
529627 TCA * 7 20/21 TCA TCA TCG TCA TCA TCA TCA
529981 TCA * 7 19/21 TCA TCA TCC TCA TCC TCA TCA
530005 TCA * 16 44/48 TCA TCA TCA TCC TCA TCC TCA TCA TCA TCA TCA TCA TCA TCA TCA TAT
530657 ACG * 8 24/24 ACG ACG ACG ACG ACG ACG ACG ACG
582146 TTC * 7 19/21 TTC TTC TTT TTT TTC TTC TTC
626466 TAC * 7 19/21 TAC TAC TAC TGC TTC TAC TAC
696827 GAA * 7 19/21 GAA GAA GGC GAA GAA GAA GAA
720867 GAA * 7 20/21 GAA GAT GAA GAA GAA GAA GAA
724779 TTA * 7 19/21 TTA TTA TTA ATT TTA TTA TTA
728875 TGC * 7 20/21 TGC TGC TGC TGC TGC TGC TGT
753312 GAT * 7 19/21 GAT GAC GAT GAC GAT GAT GAT
807193 TCT * 7 19/21 TCT TCG TCT TCT TCT TCT TCG
807330 TTC * 10 28/30 TTC TTC TTT TTC TTC TTC TTC TTC TTC GTC
908832 ATA * 7 19/21 ATA ATA ATA ATA ACG ATA ATA
955855 TCA * 7 19/21 TCA TCA TCA TCT TCT TCA TCA
957469 TTG * 8 22/24 TTG TTG TTG TTG TTG TTG TTA TTA
957493 TTA * 7 19/21 TTA TTG TTA TTA TTA TTA TTG
963443 GTG * 8 22/24 GTG GTT GTG GTG ATG GTG GTG GTG
988890 CAG * 9 25/27 CAG CAG CAG CAG CAG CAG CAG CAA CCG
-----------------------------------------------------------------------------------------
Total sequence length......................... 1090936
Minimum Tri-Nucleotide repeat units........... 7
Total number of repeats detected.............. 55
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 2 1 0 0 1 0 0 0 0 0 0 0 0
ATA 2 1 0 0 1 0 0 0 0 0 0 0 0
ATT 2 1 0 0 0 1 0 0 0 0 0 0 0
ATG 2 1 0 1 0 0 0 0 0 0 0 0 0
AGA 3 2 1 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
ACT 1 1 0 0 0 0 0 0 0 0 0 0 0
ACG 4 4 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TAC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 2 2 0 0 0 0 0 0 0 0 0 0 0
TTG 3 2 0 1 0 0 0 0 0 0 0 0 0
TTC 3 2 1 0 0 0 0 0 0 0 0 0 0
TGC 2 1 1 0 0 0 0 0 0 0 0 0 0
TCA 6 5 0 0 1 0 0 0 0 0 0 0 0
TCT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAA 4 4 0 0 0 0 0 0 0 0 0 0 0
GAT 3 3 0 0 0 0 0 0 0 0 0 0 0
GTT 2 1 1 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 1 0 1 0 0 0 0 0 0 0 0 0 0
CAA 2 0 1 1 0 0 0 0 0 0 0 0 0
CAG 5 4 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
2 AAT + 2 ATA + 0 TAA + 2 ATT + 2 TTA + 1 TAT = 9
0 AAG + 3 AGA + 4 GAA + 0 CTT + 3 TTC + 1 TCT = 11
0 AAC + 1 ACA + 2 CAA + 2 GTT + 3 TTG + 0 TGT = 8
2 ATG + 0 TGA + 3 GAT + 0 CAT + 0 ATC + 6 TCA = 11
0 AGT + 0 GTA + 0 TAG + 1 ACT + 0 CTA + 1 TAC = 2
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 0 GCA + 5 CAG + 1 GCT + 0 CTG + 2 TGC = 9
4 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 4
0 ACC + 0 CCA + 0 CAC + 0 GGT + 1 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|6862570|ref|NC_001140.2|| Saccharomyces cerevisiae chromosome VIII, complete chromosome sequence
Position Repeat Coverage Repeat
47159 TGT * 7 19/21 TGT TAT TGT TGT TGG TGT TGT
48208 CAA * 12 33/36 CAA CGG CAA CAA CAA CAA CAA CAA CAA CAA CAA CAG
49464 CAT * 7 20/21 CAT CAT CAT CAT CAT CAT CAA
57517 ATA * 9 26/27 ATA ATA ATA ATA GTA ATA ATA ATA ATA
58392 AAC * 10 28/30 AAC AAC AAC AAC AAC AAC AAC AAC AGT AAC
66560 TGC * 11 30/33 TGC TGC TGC TGC TGC TGT TGC TGT TGC TGT TGC
68988 TTC * 7 19/21 TTC TTC TTC CTT TTC TTC TTC
75439 AAC * 8 22/24 AAC AAG AAC AAC AAC AAC AAC AAA
103192 GCA * 10 27/30 GCA GCA ACA GCA GCA GCA TCA GCA GCA GAA
137414 CAT * 8 23/24 CAT CAT CAT CAT AAT CAT CAT CAT
144497 GCA * 8 23/24 GCA GCA GCA GCA GCA GCA GCA GCT
169176 TGC * 7 19/21 TGC TGT TGC TGT TGC TGC TGC
197254 TTA * 14 39/42 TTA TTA TTA TCA TTA TTA TTA TTA TCA TTA TTA TTA TTA CTA
252862 TCA * 16 44/48 TCA TCA TCA TCA TCC TCA TCA TCA TCA TCT TCA TCA TCA TCC TCA TCG
252920 CAT * 12 33/36 CAT CAT CAT CAT CAT CGT CAT CGT CAT CGT CAT CAT
253093 TCA * 7 19/21 TCA TCA TCT TCA TCC TCA TCA
259695 TCA * 7 19/21 TCA TCA TCT TCA TCA GCA TCA
269875 TGT * 7 19/21 TGT TGT TGT TAT TAT TGT TGT
298180 TGG * 7 19/21 TGG TGG TGG TGG TTG TGT TGG
341082 CAG * 7 19/21 CAG TGG CAG CAG CAG CAG CAG
342588 AAG * 7 19/21 AAG AGG AAG AAG AAG AAG AAT
365382 TCA * 10 27/30 TCA TCA TCA TCA TCA TCA TCA TCG TCG TCG
365424 TCA * 7 19/21 TCA TCA TCA TCA TCA TCG TCG
365451 TCA * 8 22/24 TCA TCA TCA TCC TCA CCA TCA TCA
366897 CTC * 7 19/21 CTC CTC CTT CTC CTC CTT CTC
386097 CTT * 10 27/30 CTT CTT CTT CTT CTT CTT CTT CTT CTT TCG
391821 AAT * 11 31/33 AAT AAT ATT AAT AAT AAT AAT AAT AAT AAT AAA
391883 AAT * 7 19/21 AAT AAT AAT AAT AGT AAT AGT
391904 AGT * 8 22/24 AGT AGT AGT AGT AGC AGT TGT AGT
413628 TTA * 7 20/21 TTA TTA TTA TTA TTG TTA TTA
420564 TGT * 7 19/21 TGT TGT TGC TGT TGC TGT TGT
420588 TGT * 7 19/21 TGT TGC TGT TGT TGC TGT TGT
436872 GGT * 8 22/24 GGT GGT GGT GGT GGT GGT GGA AGT
479094 TTG * 8 22/24 TTG TTG TTG TTG TTG TTG CTG CTG
510043 AAC * 7 19/21 AAC AAC AAT AAC AAC AAC AAT
514441 CAG * 7 19/21 CAG CAG CAG CAG CAG CAT CAC
527580 TTC * 7 19/21 TTC TTC CTC TTC TTC CTC TTC
541242 CTG * 7 19/21 CTG CTG CTG CTG CTG CTA TTG
541266 TTG * 7 19/21 TTG TTG TTG TTG TTG TTT TGG
552030 GAA * 10 27/30 GAA GAA GAA GAA GAA GAA GAG GAA CAA CAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 562639
Minimum Tri-Nucleotide repeat units........... 7
Total number of repeats detected.............. 40
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 2 1 1 0 0 0 0 0 0 0 0 0 0
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 3 2 1 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
AGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 2 1 0 1 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TTC 2 2 0 0 0 0 0 0 0 0 0 0 0
TGT 4 4 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 1 1 0 0 0 0 0 0 0 0 0 0
TCA 6 4 1 0 1 0 0 0 0 0 0 0 0
GAA 1 0 1 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 1 1 0 0 0 0 0 0 0 0 0 0
CAA 1 0 1 0 0 0 0 0 0 0 0 0 0
CAT 3 2 1 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CTT 1 0 1 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
2 AAT + 1 ATA + 0 TAA + 0 ATT + 2 TTA + 0 TAT = 5
1 AAG + 0 AGA + 1 GAA + 1 CTT + 2 TTC + 0 TCT = 5
3 AAC + 0 ACA + 1 CAA + 0 GTT + 2 TTG + 4 TGT = 10
0 ATG + 0 TGA + 0 GAT + 3 CAT + 0 ATC + 6 TCA = 9
1 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 1
0 AGC + 2 GCA + 2 CAG + 0 GCT + 1 CTG + 2 TGC = 7
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 1 GGT + 0 GTG + 1 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|6322016|ref|NC_001141.1|| Saccharomyces cerevisiae chromosome IX, complete chromosome sequence
Position Repeat Coverage Repeat
27205 TGA * 7 19/21 TGA GGA TGA TGA GGA TGA TGA
44138 CCT * 7 19/21 CCT CCT CCA CCT CCC CCT CCT
44279 CCA * 7 19/21 CCA CCA CCA CCA CCG CCA CCG
49504 CAG * 10 28/30 CAG GAG CAG CAG CAG CAG CAG CAG CAG CCG
50768 ATA * 7 19/21 ATA ATA GCA ATA ATA ATA ATA
51656 ATT * 7 19/21 ATT ATT ATT ATT GTT ATT ACT
51680 ATT * 7 19/21 ATT ATT ATT ATT ATC ATC ATT
54675 TCG * 7 19/21 TCG TCG CCG TCG CCG TCG TCG
56789 AGC * 10 27/30 AGC AGC AGC AGC AGC AGC AGC AGC GCC AGA
75226 TCA * 7 19/21 TCA TCT TCA TCA CCA TCA TCA
101456 TTC * 7 19/21 TTC ATC TTC TTC ATC TTC TTC
105318 ACA * 14 38/42 ACA ACA ACA ACA ACA ACG ACA ACA ACA ACA ACA ATA ATA ATA
105360 ATA * 10 28/30 ATA ATA ATA ATA ATA ATA ACA ATA ACA ATA
105394 TAA * 7 19/21 TAA TAG TAG TAA TAA TAA TAA
105416 AAT * 9 25/27 AAT AAT AAC AAT AAT AAA AAT AAT AAT
105768 ATA * 23 64/69 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATG GTG ATA AAC
128505 TCC * 8 23/24 TCC TCC TCC TCC TCC TCC TCC TCG
128703 TCC * 10 27/30 TCC TCT TCC TCT TCC TCC TCC TCC TCC TCT
153581 GAT * 11 30/33 GAT AAT AAT GAT GAT GAT GAT GAT GAT GAT AAT
169123 TTG * 7 19/21 TTG TTG TTG TTG CTG TTG CTG
169450 CTG * 11 30/33 CTG CTG CTG TTG CTG CTG CTG CTG CTG TTG TTG
169483 TTG * 8 23/24 TTG TTG TTG TTG TTG CTG TTG TTG
175985 AGC * 10 27/30 AGC AGC AGC AGT AGC AGC AGT AGC AGC ACC
366478 TCA * 7 19/21 TCA TCA TCT TCA TCT TCA TCA
369844 TGC * 8 22/24 TGC TGC TGT TGC TGC TGT TGC TGC
376611 ACG * 10 28/30 ACG ACG ACG ACG ACG ACG ACG ACG ATG AGG
382890 ACG * 7 19/21 ACG ACG ACG ACG ACG ATG ATG
400455 CAG * 8 22/24 CAG CAG CAG CAA CAG CAA CAG CAG
-----------------------------------------------------------------------------------------
Total sequence length......................... 439885
Minimum Tri-Nucleotide repeat units........... 7
Total number of repeats detected.............. 28
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 3 1 1 0 0 0 1 0 0 0 0 0 0
ATT 2 2 0 0 0 0 0 0 0 0 0 0 0
AGC 2 0 2 0 0 0 0 0 0 0 0 0 0
ACA 1 0 0 1 0 0 0 0 0 0 0 0 0
ACG 2 1 1 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TTC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 2 2 0 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
TCC 2 1 1 0 0 0 0 0 0 0 0 0 0
GAT 1 0 1 0 0 0 0 0 0 0 0 0 0
CAG 2 1 1 0 0 0 0 0 0 0 0 0 0
CTG 1 0 1 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 3 ATA + 1 TAA + 2 ATT + 0 TTA + 0 TAT = 7
0 AAG + 0 AGA + 0 GAA + 0 CTT + 1 TTC + 0 TCT = 1
0 AAC + 1 ACA + 0 CAA + 0 GTT + 2 TTG + 0 TGT = 3
0 ATG + 1 TGA + 1 GAT + 0 CAT + 0 ATC + 2 TCA = 4
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 1 CCT + 0 CTC + 2 TCC = 3
2 AGC + 0 GCA + 2 CAG + 0 GCT + 1 CTG + 1 TGC = 6
2 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 1 TCG = 3
0 ACC + 1 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|6322236|ref|NC_001142.1|| Saccharomyces cerevisiae chromosome X, complete chromosome sequence
Position Repeat Coverage Repeat
138673 GAT * 8 22/24 GAT GAC GAT GAT GAT GAT GAT GAA
140756 AAG * 8 22/24 AAG AAG AAA AAG AAG AAG GAG AAG
149844 TGT * 7 19/21 TGT TGT TGT TGT TGT TGC TGC
173854 TGT * 7 20/21 TGT TGT TAT TGT TGT TGT TGT
175449 TCA * 8 22/24 TCA TCG TCA TCA TCA TCA TCA TCC
178854 ACC * 7 19/21 ACC ACC ACC ACC ACT ACT ACC
188718 CTC * 7 19/21 CTC CTC CTC CTC CTC TTC TTC
188739 TTC * 10 27/30 TTC TTC TTC TTC CTC CTC TTC TTC TTC TTT
241949 AGA * 7 19/21 AGA AGA CGA AGA AGA AGA ATA
244989 TAA * 8 22/24 TAA TAT TAA TAA CAA TAA TAA TAA
279724 TCA * 8 22/24 TCA TCA CCA TCA TCA TCA CCA TCA
304413 CAA * 8 22/24 CAA CAA CAA CAA CAG CAG CAA CAA
311817 CTT * 7 19/21 CTT CTT CTT CAT CGT CTT CTT
314767 CGT * 7 19/21 CGT CTT CGT CGT CGT CTT CGT
346780 AAG * 7 19/21 AAG ACG AAG AAG CAG AAG AAG
361332 CAC * 8 22/24 CAC CAC CAC CGC CAC CAC CAT CAC
362130 AAC * 7 19/21 AAC AAC AAC AAC AAC AGC ACC
403759 CAG * 8 24/24 CAG CAG CAG CAG CAG CAG CAG CAG
469811 AAT * 22 60/66 AAT AAT AGT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT ACC ATG TAT
497673 GAA * 7 19/21 GAA GAT GAC GAA GAA GAA GAA
519354 TTG * 10 27/30 TTG TTG CCG TTG TTG TTG TTG TTG TTG TTA
534290 AGA * 7 19/21 AGA AGA AGA AGA GGA CGA AGA
566601 TAT * 10 27/30 TAT TAT TAT TAT TAT TAT CAT TAT TTT TGT
593876 TTG * 12 33/36 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TCG TCA
594808 TGT * 8 22/24 TGT TGT TAT TAT TGT TGT TGT TGT
661450 TTG * 10 28/30 TTG CTG TTG TTG TTG TTG TTG TTG TTG CTG
-----------------------------------------------------------------------------------------
Total sequence length......................... 745440
Minimum Tri-Nucleotide repeat units........... 7
Total number of repeats detected.............. 26
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 0 0 0 0 0 1 0 0 0 0 0 0
AAG 2 2 0 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGA 2 2 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 0 1 0 0 0 0 0 0 0 0 0 0
TTG 3 0 3 0 0 0 0 0 0 0 0 0 0
TTC 1 0 1 0 0 0 0 0 0 0 0 0 0
TGT 3 3 0 0 0 0 0 0 0 0 0 0 0
TCA 2 2 0 0 0 0 0 0 0 0 0 0 0
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CGT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 1 TAA + 0 ATT + 0 TTA + 1 TAT = 3
2 AAG + 2 AGA + 1 GAA + 1 CTT + 1 TTC + 0 TCT = 7
1 AAC + 0 ACA + 1 CAA + 0 GTT + 3 TTG + 3 TGT = 8
0 ATG + 0 TGA + 1 GAT + 0 CAT + 0 ATC + 2 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 1
0 AGC + 0 GCA + 1 CAG + 0 GCT + 0 CTG + 0 TGC = 1
0 ACG + 0 CGA + 0 GAC + 1 CGT + 0 GTC + 0 TCG = 1
1 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|6322623|ref|NC_001143.1|| Saccharomyces cerevisiae chromosome XI, complete chromosome sequence
Position Repeat Coverage Repeat
38639 AAG * 8 22/24 AAG AAG AAG AAG AAG AAG AGG ACG
42337 TTA * 11 31/33 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA ATG
89457 ATC * 7 19/21 ATC AGC ATC ATC ATC ATC ACC
126102 AGA * 12 34/36 AGA GGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGG
172564 GGA * 7 19/21 GGA AGA AGA GGA GGA GGA GGA
184498 TAA * 11 31/33 TAA TAG TAA TAA TAA TAA TAA TAA TAA TAA TGA
220573 GAA * 7 19/21 GAA GAA GAT GAA GAA GAG GAA
232187 TAA * 8 22/24 TAA TAA TAA TAA TAA TAA TAA CAT
240299 TCA * 14 38/42 TCA TCA TCA TCG TCA TCA TCA TCG TCA TCA TCA TCG TCA ACA
240398 TCA * 7 19/21 TCA TCA TCA TCG TCA TTA TCA
275361 AGC * 7 19/21 AGC AGC AGC AGC AGC AGG AAC
276530 GAG * 8 22/24 GAG GAT GAG GAG GAC GAG GAG GAG
280025 TGA * 13 36/39 TGA TGG TGA TGA TAA TGA TGA TGA TGA TGA TAA TGA TGA
280638 TAT * 7 19/21 TAT TAT TGT TGT TAT TAT TAT
292751 ATC * 7 19/21 ATC TTC ATC TTC ATC ATC ATC
336249 GCA * 8 22/24 GCA GCA GCA GCG GCA GCG GCA GCA
336656 AGC * 7 19/21 AGC GGC AGC AGC AGC GGC AGC
337105 GTT * 7 19/21 GTT GTT GTT GCT GTT GCT GTT
337128 TGT * 10 27/30 TGT TGT AGT TGT TGT TGT GGT TGT TGT GGT
337161 TGT * 7 19/21 TGT GGT TGT TGT TGT TGC TGT
379755 TGT * 12 33/36 TGT TGT TGT TGT TGC TGC TGT TGT TGT TGT TGT TGG
380523 TGT * 10 27/30 TGT TGT TGT TGA AGT TGT TGT TGT TGT TGC
380916 TTG * 7 19/21 TTG TTG TTG TTA CTG TTG TTG
381144 TGT * 11 31/33 TGT TGT TGT TGT TGT TGC TGT TGT TGT TGT TGC
381278 TTG * 8 22/24 TTG TTG TTG TTG CTG TTG TTG CTG
382199 TAT * 13 36/39 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAC GGT
386551 GAA * 7 19/21 GAA GAA GAA GAG GAA GAA GAG
386780 ATG * 13 36/39 ATG ATG GTG ATG ATG ATG ATG ATG ATG ATG ATG ATG AGA
408771 ATG * 8 22/24 ATG AGG ATG ATG ATG AAG ATG ATG
458782 GAA * 8 22/24 GAA GAA GAA GAA GAA GGT GAA GAA
466886 TAT * 7 19/21 TAT TTT TAT TAT TAC TAT TAT
519434 TCC * 7 19/21 TCC TCC TCT TCC TCT TCC TCC
523290 TGC * 8 22/24 TGC TGC TGT TGC TGC TGC TGC TGT
524852 TAT * 10 28/30 TAT TAT TAT CAT TAT TAT TAT TAT TAT TGT
530444 AAT * 7 20/21 AAT AAT AAT AAT AAT AAT AAC
532095 GCA * 7 19/21 GCA GCA GCA GCA ACA GCA CCA
561403 ATC * 8 23/24 ATC ATC ATC ATC GTC ATC ATC ATC
566737 GCA * 10 27/30 GCA GCA GCA GCA GCA GCA GCA GCA GCG GAG
576120 TCG * 25 68/75 TCG TCA TCA TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG TCA TCG TCG TCA TCG TCA TCA TCA TCG
586489 TCT * 7 19/21 TCT TCT TCT TCT TCC TTT TCT
600016 ATG * 7 19/21 ATG ATA ATG ATG ATG ATT ATG
613326 CTG * 12 35/36 CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTT
613404 GAG * 12 33/36 GAG GAG GAG GAG GAG GAG GAG GAG GAG GAA GAA GAA
627065 CAA * 7 19/21 CAA CAA CAA CAA TAA TAA CAA
627120 AAC * 8 22/24 AAC AAC GAC GAC AAC AAC AAC AAC
633118 ATG * 7 19/21 ATG GTG ATG ATG GTG ATG ATG
-----------------------------------------------------------------------------------------
Total sequence length......................... 666445
Minimum Tri-Nucleotide repeat units........... 7
Total number of repeats detected.............. 46
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 4 3 0 1 0 0 0 0 0 0 0 0 0
ATC 3 3 0 0 0 0 0 0 0 0 0 0 0
AGA 1 0 1 0 0 0 0 0 0 0 0 0 0
AGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TAA 2 1 1 0 0 0 0 0 0 0 0 0 0
TAT 4 2 1 1 0 0 0 0 0 0 0 0 0
TTA 1 0 1 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGA 1 0 0 1 0 0 0 0 0 0 0 0 0
TGT 5 1 4 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 2 1 0 1 0 0 0 0 0 0 0 0 0
TCT 1 1 0 0 0 0 0 0 0 0 0 0 0
TCG 1 0 0 0 0 0 0 1 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAA 3 3 0 0 0 0 0 0 0 0 0 0 0
GAG 2 1 1 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 3 2 1 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 2 TAA + 0 ATT + 1 TTA + 4 TAT = 8
1 AAG + 1 AGA + 3 GAA + 0 CTT + 0 TTC + 1 TCT = 6
1 AAC + 0 ACA + 1 CAA + 1 GTT + 2 TTG + 5 TGT = 10
4 ATG + 1 TGA + 0 GAT + 0 CAT + 3 ATC + 2 TCA = 10
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 2 GAG + 0 CCT + 0 CTC + 1 TCC = 4
2 AGC + 3 GCA + 0 CAG + 0 GCT + 1 CTG + 1 TGC = 7
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 1 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|6322960|ref|NC_001144.1|| Saccharomyces cerevisiae chromosome XII, complete chromosome sequence
Position Repeat Coverage Repeat
50090 AAT * 11 30/33 AAT AAT AAC AAT AAT AAT AAT AAT AAT AAC AGT
50123 AAC * 7 19/21 AAC AAC AAC AAC AAC GGC AAC
105417 ATA * 13 36/39 ATA ATA ATA ATA ATT ATA ATA ATA ATA ATA ATA GTA GTA
123487 TTG * 12 33/36 TTG TTG TTG TTG TTG TTG CTG TTG CTG TTG TTG CTG
129262 TTC * 7 19/21 TTC TTC ATC TTC TTC ATC TTC
130128 TGT * 8 22/24 TGT TGT TGT TGT TGC TGC TGT TGT
132234 AGA * 8 22/24 AGA AGA AGA AGA AGA AGA GGA GGA
132265 GAG * 7 19/21 GAG GAA GAG GAG GAA GAG GAG
180664 AGA * 8 22/24 AGA AGA AGA AGA AGA AGA TGA CGA
188357 ATC * 7 19/21 ATC ACC ATC ACC ATC ATC ATC
205113 ATG * 8 22/24 ATG ATG ATG ATG ATG ATG TTG TTG
243252 GAA * 7 19/21 GAA GAA GGT GAA GAA GAA GAA
246740 TTC * 7 19/21 TTC TTC TTC TTC TTC TTG TTT
252909 TCA * 11 30/33 TCA TCA TCA TCG TCC TCA TCA TCA TCA TCG TCA
263919 AGA * 10 27/30 AGA AGA AGA CGA AGA AGA AGA CGA AGA ATA
279919 TCG * 7 19/21 TCG TCG TCA TCG TCG TCA TCG
281379 ACG * 8 22/24 ACG ATG ACG ACG ATG ACG ACG ACG
287204 AGA * 8 22/24 AGA AGA AGA AGA AGA AGG AGA AGT
375372 TCA * 8 22/24 TCA TCA CCA CCA TCA TCA TCA TCA
451257 TTA * 7 19/21 TTA TAA TTC TTA TTA TTA TTA
511515 CAG * 15 41/45 CAG AAA CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAA CAG CAA
555318 ACA * 9 25/27 ACA ACA ACA ACA ACC ACA ACA ACA ACC
556345 CAG * 11 31/33 CAG CAG CAG CAG CAG CAG CAA CAG CAG CAA CAG
559215 CAA * 8 22/24 CAA GAG CAA CAA CAA CAA CAA CAA
574254 CTG * 7 19/21 CTG CTG CTG CTG CCT CTG CTG
585057 TCG * 7 19/21 TCG TCG TCG TCG TCT TCG TCA
602118 GTT * 7 19/21 GTT GCT GTT GTT GTT GTT GTA
656825 TAT * 7 19/21 TAT TTT TAT TAT TAT TAT TTT
667993 GTT * 8 23/24 GTT GTT GTT GTT TTT GTT GTT GTT
668124 ATT * 7 19/21 ATT ATG ATT ATG ATT ATT ATT
700311 TTG * 7 19/21 TTG TTG TTG ATG TTG TTG CTG
701184 ATT * 30 81/90 ATT ATT ATT AAC ATT ATT ATT ATT ATT ACT ATT ATT ATT ATT ATT GTT ATT ATT ATT ATT ATT ATC ATT ATT ATT GTT GTG ATT ATT GTT
785092 CAT * 7 19/21 CAT CAT CAT CAC CAT CAT CAC
789634 AAG * 10 27/30 AAG AAG AAG AAT AAG AAG AAT AAG AAG AAA
805068 GGA * 7 19/21 GGA GGC GGT GGA GGA GGA GGA
806705 GCT * 7 19/21 GCT GCT GCT GCT CCA GCT GCT
849640 TTA * 10 28/30 TTA CTA TTA TTA TTA TTA TTA TTA TTA CTA
863473 TAA * 7 19/21 TAA CAA TCA TAA TAA TAA TAA
863691 ATC * 10 27/30 ATC CTC ATC ATC ATC ATC ATC ATC ATC ACT
904178 TCT * 7 19/21 TCT TCT TCC TCT TCT TCT TCC
927177 TGA * 11 30/33 TGA TGA TGA CGA TGA TGT TGA TGA TGA CGA TGA
993469 TAA * 7 19/21 TAA TAA TAA TAA TAA GGA TAA
999203 AAG * 7 19/21 AAG AAG AAA GAG AAG AAG AAG
999578 GAT * 7 19/21 GAT GAT GAT GAC GAA GAT GAT
1006827 TGA * 7 19/21 TGA TGA TGA TGA AGA CGA TGA
1011922 CTG * 10 27/30 CTG TTG CTG CTG CTG CTG CTG CTC CTG TTG
1031396 AGA * 12 33/36 AGA AGA AGA AGA AGA AGA AGA AGA AGA GGA CGA TGA
1038153 AGA * 9 25/27 AGA AGA AGA AGA AGA AGA AGA AGA ACT
-----------------------------------------------------------------------------------------
Total sequence length......................... 1078172
Minimum Tri-Nucleotide repeat units........... 7
Total number of repeats detected.............. 48
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 0 1 0 0 0 0 0 0 0 0 0 0
AAG 2 1 1 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 0 0 1 0 0 0 0 0 0 0 0 0
ATT 2 1 0 0 0 0 0 0 1 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 2 1 1 0 0 0 0 0 0 0 0 0 0
AGA 6 4 2 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
ACG 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 2 2 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 2 1 1 0 0 0 0 0 0 0 0 0 0
TTG 2 1 1 0 0 0 0 0 0 0 0 0 0
TTC 2 2 0 0 0 0 0 0 0 0 0 0 0
TGA 2 1 1 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 2 1 1 0 0 0 0 0 0 0 0 0 0
TCT 1 1 0 0 0 0 0 0 0 0 0 0 0
TCG 2 2 0 0 0 0 0 0 0 0 0 0 0
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 2 2 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 0 1 1 0 0 0 0 0 0 0 0 0
CTG 2 1 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 1 ATA + 2 TAA + 2 ATT + 2 TTA + 1 TAT = 9
2 AAG + 6 AGA + 1 GAA + 0 CTT + 2 TTC + 1 TCT = 12
1 AAC + 1 ACA + 1 CAA + 2 GTT + 2 TTG + 1 TGT = 8
1 ATG + 2 TGA + 1 GAT + 1 CAT + 2 ATC + 2 TCA = 9
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 2
0 AGC + 0 GCA + 2 CAG + 1 GCT + 2 CTG + 0 TGC = 5
1 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 2 TCG = 3
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|6323501|ref|NC_001145.1|| Saccharomyces cerevisiae chromosome XIII, complete chromosome sequence
Position Repeat Coverage Repeat
5915 ACC * 7 19/21 ACC ACC ACT ACC ACC ACC GCC
44387 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAA CAA
65928 TGT * 10 28/30 TGT TGT TGT TGT TGT TGT TGT TGT TGT TTG
78678 TCT * 7 19/21 TCT TCT TCC TCT TTT TCT TCT
86941 TTA * 44 119/132 TTA TTA TTA CTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TAT GAC ATT AAT TAC
120592 CTT * 17 46/51 CTT CTT CTT TTT GTT CTT CTT CTT CTT CTT CTT CTT GTT CTT CTT CTC CAT
130088 TTC * 7 19/21 TTC TTC TTC TTC TTT TTC TGC
143059 GAA * 12 33/36 GAA GAA GAA GAC GAA GAA GAA GAC GAA GAC GAA GAA
157390 TCT * 8 22/24 TCT TCT TCT TCG TCT TCT TCA TCT
169458 ATT * 8 22/24 ATT ATG GTT ATT ATT ATT ATT ATT
169482 GTT * 8 22/24 GTT GTT GTT GTT GTT GTT GAT GAT
175885 TTC * 7 19/21 TTC TTC TTC TTC TTT TTC ATC
175913 TCT * 9 25/27 TCT TCT TCT TCT TCT TCT TCT TCC TCA
179694 ACT * 18 50/54 ACT ACT ACT ACT ACT ACT AGT ACT ACT ACT ATT ACT ATT ACT ATT ACT ACT ACT
209871 ATG * 14 39/42 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ACA ATG ATA
238304 ACA * 8 22/24 ACA ACA ACA ACA ACA ACA ACA CTA
238331 ATA * 14 39/42 ATA ATA ATA ATA ATA ATA ATA ATA GTA GTA GTA ATA ATA ATA
248142 GAT * 7 19/21 GAT GAC GAT GAT GAT GAT GAG
248240 TGA * 7 19/21 TGA TGA TGA AGA TGA AGA TGA
257370 ACT * 8 22/24 ACT ACT ACT ATT ACT GCT ACT ACT
272285 ACA * 7 19/21 ACA ACA ACA ACA ACA ACC AAA
303998 CTA * 7 19/21 CTA CTG CTA CTA CTA CTG CTA
354193 TGA * 12 33/36 TGA TGA TGA TGA TGA TGA TGA CGA TGA TGG TAA TGA
354439 ACA * 7 19/21 ACA ACA GCA ACA GCA ACA ACA
354544 ACA * 10 27/30 ACA GCA ACA GCA ACA ACA ACA ACA ACA ACT
354574 GCA * 7 19/21 GCA ACA GCA GCA ACA GCA GCA
356112 GAG * 7 19/21 GAG GAA GAG GAG GAA GAG GAG
387071 TTA * 7 19/21 TTA CTA TTA TTA CTA TTA TTA
409194 ACA * 7 19/21 ACA ACA GCA TCA ACA ACA ACA
409507 AAC * 8 22/24 AAC AAC AGC AAC AAC AGC AAC AAC
409579 AAT * 12 33/36 AAT AAT AAC AAT AAT AAT AAT AAT AAC AAC AAT AAT
414031 TTC * 7 19/21 TTC TTC TCC TTC ATC TTC TTC
514628 GCA * 9 25/27 GCA GCA GCA GCA GCA GCA GCA GCA ATA
515564 ACA * 10 27/30 ACA AAG ACA ACA ACA ACA ACA ACA ACA ACT
539498 CTG * 9 25/27 CTG CTG CTG CTG CTG CTG CTG CTG CCT
547314 TAT * 7 19/21 TAT TAT TAC TGT TAT TAT TAT
587629 TAT * 37 100/111 TAT TAT TAC TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAC TAT TAT TAC TAT TAT TAT TAT TAT TAT TAT TGT TGT TGT TGT TAT TGT TAT TGT TAT TGT TAG
588621 TGT * 12 33/36 TGT TGC TGT TGC TGT TGT TGT TGT TGT TGT TGC TGT
607603 GAT * 7 19/21 GAT GAT GAT GAT GAC GGT GAT
626947 AAC * 7 19/21 AAC AAC CAC AAC GAC AAC AAC
668255 TAT * 15 43/45 TAT TAT TAT TAT TAC TAT TAC TAT TAT TAT TAT TAT TAT TAT TAT
670396 TCA * 10 27/30 TCA TCA TCA TAA TTA TCA TCA TCA TCA TCG
722799 TCT * 7 19/21 TCT TCC TCT TCT TCT TCC TCT
749132 TCT * 7 19/21 TCT TCT CCT TCG TCT TCT TCT
795029 AAT * 13 36/39 AAT AAT AAC AAT AAT AAC AAT AAT AAT AAT AAT AAT AAC
804922 AGA * 8 22/24 AGA GTA AGA AGA AGA AGA AGA AGA
811238 GTT * 11 30/33 GTT GTT GTT GTT GTT GTT GTT GTT GTT CTT TGT
822226 CGA * 7 19/21 CGA CGA CGA CGA AGA TGA CGA
858186 ATA * 8 22/24 ATA ATA ATA GTA ATA ATA ACA ATA
858327 CTT * 7 19/21 CTT CTT CTT CTT CTT TTG CTT
888538 TTC * 8 22/24 TTC TTC TTC TTC TTC TTC AGC TTC
897184 ATC * 7 19/21 ATC CTC ATC TTC ATC ATC ATC
-----------------------------------------------------------------------------------------
Total sequence length......................... 924430
Minimum Tri-Nucleotide repeat units........... 7
Total number of repeats detected.............. 52
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 2 0 1 1 0 0 0 0 0 0 0 0 0
AAC 2 2 0 0 0 0 0 0 0 0 0 0 0
ATA 2 1 0 1 0 0 0 0 0 0 0 0 0
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 0 0 1 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGA 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 6 4 2 0 0 0 0 0 0 0 0 0 0
ACT 2 1 0 0 1 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 3 1 0 1 0 0 0 0 0 0 0 1 0
TTA 2 1 0 0 0 0 0 0 0 0 0 0 1
TTC 4 4 0 0 0 0 0 0 0 0 0 0 0
TGA 2 1 1 0 0 0 0 0 0 0 0 0 0
TGT 2 0 2 0 0 0 0 0 0 0 0 0 0
TCA 1 0 1 0 0 0 0 0 0 0 0 0 0
TCT 5 5 0 0 0 0 0 0 0 0 0 0 0
GAA 1 0 1 0 0 0 0 0 0 0 0 0 0
GAT 2 2 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 2 1 1 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTA 1 1 0 0 0 0 0 0 0 0 0 0 0
CTT 2 1 0 0 1 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CGA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
2 AAT + 2 ATA + 0 TAA + 1 ATT + 2 TTA + 3 TAT = 10
0 AAG + 1 AGA + 1 GAA + 2 CTT + 4 TTC + 5 TCT = 13
2 AAC + 6 ACA + 0 CAA + 2 GTT + 0 TTG + 2 TGT = 12
1 ATG + 2 TGA + 2 GAT + 0 CAT + 1 ATC + 1 TCA = 7
0 AGT + 0 GTA + 0 TAG + 2 ACT + 1 CTA + 0 TAC = 3
0 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 1
0 AGC + 2 GCA + 1 CAG + 0 GCT + 1 CTG + 0 TGC = 4
0 ACG + 1 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 1
1 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|6323989|ref|NC_001146.1|| Saccharomyces cerevisiae chromosome XIV, complete chromosome sequence
Position Repeat Coverage Repeat
54642 CTT * 7 19/21 CTT CTT CCT CGT CTT CTT CTT
55709 TCT * 7 19/21 TCT TCT TCC TCT TCG TCT TCT
60676 GCA * 7 19/21 GCA CCA GCA GCA GCA ACA GCA
70025 GCA * 11 30/33 GCA GCA GCA GCA GCA GCA GCA GCA GCA ACA AAA
106056 GAA * 7 19/21 GAA GGA GAA GAA GAA GTA GAA
106089 GTA * 8 22/24 GTA GTA GAA GTA GTA GAA GTA GTA
131640 GGA * 8 22/24 GGA GGA GGA GGA GGA GGA GGC GGT
219935 TGT * 7 19/21 TGT TGT TGT TGT CGA TGT TGT
220050 TAT * 7 20/21 TAT TGT TAT TAT TAT TAT TAT
243541 TGC * 10 27/30 TGC TGC TGC CGC TGC TGC TGC CGC TGC TTC
256813 TCA * 7 19/21 TCA TCA TCT TCA TCG TCA TCA
256981 TCT * 7 19/21 TCT TCT TCA TCA TCT TCT TCT
306012 TGA * 7 19/21 TGA TGA TGA TGA TGA TGA AGG
332672 CAA * 8 22/24 CAA CAG CAT CAA CAA CAA CAA CAA
333266 CAA * 9 25/27 CAA CAA CAA CAA CAA CAA CAG CAA CAT
333301 ACA * 10 27/30 ACA ACA ACA ACA ACA GCA GCA ACA ACA GCA
347857 TCT * 7 19/21 TCT TCT TCG TCT TCA TCT TCT
416153 GGT * 8 22/24 GGT GGT GGT CGT GGT GGT CGT GGT
439180 TCT * 7 19/21 TCT TCG TCT TCT ACT TCT TCT
440502 ACC * 7 19/21 ACC AAC ACC ACC ACC ACC AAC
482887 TAA * 7 19/21 TAA TAT TAA TAA TAA TAA TGA
493994 CAG * 7 19/21 CAG AAG CAG CAG CAG AAG CAG
515982 TCT * 10 27/30 TCT TCT TCT TCT TCT TCT TCT TCT TCT AGA
527486 CAG * 8 22/24 CAG CAG CAG CAG CAG CAA CAG CAA
541529 TAT * 8 22/24 TAT TGT TAT TAT TAA TAT TAT TAT
556029 AAG * 7 19/21 AAG AAG AAC AGG AAG AAG AAG
579957 CAA * 7 19/21 CAA CAG CAA CAG CAA CAA CAA
602922 AAC * 10 28/30 AAC AAC ATC AAC AAC AAC AAC AAC AGC AAC
604232 CAG * 7 19/21 CAG CAA CAG CAG CAA CAG CAG
637869 AAG * 7 19/21 AAG AAA TAG AAG AAG AAG AAG
652545 CAG * 10 28/30 CAG AAG CAG CAG CAG GAG CAG CAG CAG CAG
701520 GAG * 8 22/24 GAG GAA GGG GAG GAG GAG GAG GAG
720267 CTG * 7 19/21 CTG CTG CTG TTG CTG CTG TTG
720288 TTG * 7 19/21 TTG TTG CTG CTG TTG TTG TTG
720376 TGT * 8 22/24 TGT TGT TGT TGC TGT TGC TGT TGT
-----------------------------------------------------------------------------------------
Total sequence length......................... 784328
Minimum Tri-Nucleotide repeat units........... 7
Total number of repeats detected.............. 35
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAG 2 2 0 0 0 0 0 0 0 0 0 0 0
AAC 1 0 1 0 0 0 0 0 0 0 0 0 0
ACA 1 0 1 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 2 2 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 1 0 1 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
TCT 5 4 1 0 0 0 0 0 0 0 0 0 0
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTA 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 1 1 0 0 0 0 0 0 0 0 0 0
CAA 3 3 0 0 0 0 0 0 0 0 0 0 0
CAG 4 3 1 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 0 ATT + 0 TTA + 2 TAT = 3
2 AAG + 0 AGA + 1 GAA + 1 CTT + 0 TTC + 5 TCT = 9
1 AAC + 1 ACA + 3 CAA + 0 GTT + 1 TTG + 2 TGT = 8
0 ATG + 1 TGA + 0 GAT + 0 CAT + 0 ATC + 1 TCA = 2
0 AGT + 1 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 1 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 2
0 AGC + 2 GCA + 4 CAG + 0 GCT + 1 CTG + 1 TGC = 8
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
1 ACC + 0 CCA + 0 CAC + 1 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|6324406|ref|NC_001147.1|| Saccharomyces cerevisiae chromosome XV, complete chromosome sequence
Position Repeat Coverage Repeat
45896 ATT * 9 25/27 ATT ATT ATT ATT ATT ATT ATT GTT ACT
53928 AAG * 13 36/39 AAG GAG AGG AAG AAG AAG AAG AAG AAG AAG AAA AAG AAG
63056 TCA * 15 42/45 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA CCA TCA TCA TTA TTA
110775 ATA * 20 54/60 ATA ATA ATA ATA ATA CTA ATA ATA ATA ATA ATA ATA ATA ATA ATA GTA GTA GTA GTA GTA
110844 ATG * 7 21/21 ATG ATG ATG ATG ATG ATG ATG
111520 GCT * 7 19/21 GCT GCT GCT GCT GCT GCC GGT
157521 ATG * 7 19/21 ATG GTG ATG ATG ATG ATG GTG
227272 AAT * 7 19/21 AAT AGT AAT AAT AAT AAT GAT
227293 GAT * 18 49/54 GAT GAC GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT TAT GAT TAC AAT
235376 CAA * 8 22/24 CAA CAA CAA CAA CAA CAA CAG CAG
236963 CAA * 8 22/24 CAA CAA CAA CAG CAG CAA CAA CAA
236993 CAA * 8 22/24 CAA CAA CAA CAG CAG CAA CAA CAA
242799 TAA * 7 20/21 TAA TAA TAA TAA TAA TAA AAA
254547 GAA * 7 19/21 GAA GAA GAA AAG GAA GAA GAA
269375 GAC * 7 19/21 GAC GAC GAA GAA GAC GAC GAC
302269 TCG * 7 19/21 TCG TCG TCA TCG TCG TCG TCA
370268 AAG * 7 19/21 AAG AAG AAG AAA AAA AAG AAG
427910 TCG * 11 30/33 TCG TCG TCG TCG TCG TCG TCA TCA TCG TCG TCA
427943 TCA * 7 19/21 TCA TCG TCG TCA TCA TCA TCA
427964 TCG * 21 57/63 TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG TCA TCA TCG TCA TCA TCA TCA TCG
430962 ATC * 7 19/21 ATC ACC ATC ATC ATC AGC ATC
466165 CAA * 8 22/24 CAA CAA CAA CAG CAA CAA CAA AAA
534508 CAA * 7 19/21 CAA CAG CAG CAA CAA CAA CAA
535155 CAA * 12 34/36 CAA TAA CAA TAA CAA CAA CAA CAA CAA CAA CAA CAA
553235 TCT * 8 22/24 TCT TTT TCT TCT TCT TCC TCT TCT
553325 TCT * 7 19/21 TCT TCT TCT TCT TCT TCC TCA
554346 CAT * 8 23/24 CAT CAT CAT CAT CAT CGT CAT CAT
554402 TCT * 7 19/21 TCT TCT TCT TGT TCC TCT TCT
579516 CAT * 8 24/24 CAT CAT CAT CAT CAT CAT CAT CAT
585241 TCT * 8 22/24 TCT TCT TCT TCT TCC TCT TCT TCG
592330 CTT * 7 19/21 CTT CTT CAT CTT CAT CTT CTT
625981 TCT * 7 19/21 TCT TCT TCT TCT TCT TCG GCT
630491 ATT * 11 30/33 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT TGA
633083 AAT * 7 19/21 AAT AAT GGT AAT AAT AAT AAT
741050 TCA * 7 19/21 TCA TCA TCC TCG TCA TCA TCA
768665 GAC * 14 39/42 GAC GAC GAC GAC GAC GAC GAC AAC GAC GAC GAC GAC GAA GAA
822920 TGT * 25 69/75 TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT GGA TTG TTT TGG
895708 TCT * 7 19/21 TCT CCT TCT TCT TCT TCT TCA
936837 TGC * 7 19/21 TGC TGC TGC TGT TGC TGT TGC
936995 TTG * 7 19/21 TTG TTG TTG TTG TTG CTG CTG
1036125 TTG * 17 46/51 TTG CTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG CTG TTG TAT CTG
1037510 AAT * 20 54/60 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AGT ATT AAT ATT AAT AAT AAG GAT AAC
1059862 TCC * 11 30/33 TCC TCC TCA TCC TCC TCA TCC TCC TCC TCC TCT
1060162 TAT * 12 33/36 TAT TAT TAT TAT TGT TAT TAT TAT TAT TAT CAT TAC
1074682 CCA * 7 21/21 CCA CCA CCA CCA CCA CCA CCA
-----------------------------------------------------------------------------------------
Total sequence length......................... 1091283
Minimum Tri-Nucleotide repeat units........... 7
Total number of repeats detected.............. 45
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 3 2 0 0 0 1 0 0 0 0 0 0 0
AAG 2 1 0 1 0 0 0 0 0 0 0 0 0
ATA 1 0 0 0 0 1 0 0 0 0 0 0 0
ATT 2 1 1 0 0 0 0 0 0 0 0 0 0
ATG 2 2 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 0 1 0 0 0 0 0 0 0 0 0 0
TTG 2 1 0 0 1 0 0 0 0 0 0 0 0
TGT 1 0 0 0 0 0 0 1 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 3 2 0 1 0 0 0 0 0 0 0 0 0
TCT 6 6 0 0 0 0 0 0 0 0 0 0 0
TCG 3 1 1 0 0 1 0 0 0 0 0 0 0
TCC 1 0 1 0 0 0 0 0 0 0 0 0 0
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 0 0 0 1 0 0 0 0 0 0 0 0
GAC 2 1 0 1 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 6 5 1 0 0 0 0 0 0 0 0 0 0
CAT 2 2 0 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
3 AAT + 1 ATA + 1 TAA + 2 ATT + 0 TTA + 1 TAT = 8
2 AAG + 0 AGA + 1 GAA + 1 CTT + 0 TTC + 6 TCT = 10
0 AAC + 0 ACA + 6 CAA + 0 GTT + 2 TTG + 1 TGT = 9
2 ATG + 0 TGA + 1 GAT + 2 CAT + 1 ATC + 3 TCA = 9
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 1 TCC = 1
0 AGC + 0 GCA + 0 CAG + 1 GCT + 0 CTG + 1 TGC = 2
0 ACG + 0 CGA + 2 GAC + 0 CGT + 0 GTC + 3 TCG = 5
0 ACC + 1 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|6324971|ref|NC_001148.1|| Saccharomyces cerevisiae chromosome XVI, complete chromosome sequence
Position Repeat Coverage Repeat
16368 TGG * 8 24/24 TGG TGG TGG TGG TGG TGG TGG TGG
65845 TCT * 8 22/24 TCT TCT TCT TCT TCT TCT TCG TTT
108103 GTT * 7 19/21 GTT GTT GTT GTC GTT GTT GTC
115869 ACA * 8 22/24 ACA GCA ACA ACA CCA ACA ACA ACA
117184 CAG * 11 30/33 CAG CAG CAG CAA CAG CAG CAG CAA CAG CAG CAA
120120 TAA * 10 27/30 TAA TAA TAA TAA TAA TGA TAA TAA TAA CAT
121993 ACA * 8 22/24 ACA ACA ACT ACA ACA ACT ACA ACA
136819 ATG * 7 19/21 ATG ATG ATG ATG ATG ATA ACG
185383 TGT * 14 38/42 TGT TGC TGT TGC TGT TGT TGT TGT TGT TGT TGT TGT TGA GGT
187313 CTT * 14 38/42 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CAT CAT CAT CGT
187357 TCA * 8 22/24 TCA TCA TCA TCA TCG TCA TCA TCC
187381 TCT * 7 19/21 TCT TCT TCC TCT TCT TCC TCT
187402 TCA * 8 22/24 TCA TTA TCA TCA TCG TCA TCA TCA
187446 TTC * 8 22/24 TTC TTC TTC TTC TTC TTC TTC TGT
197705 TTA * 7 20/21 TTA TTA TTG TTA TTA TTA TTA
197730 TAT * 7 19/21 TAT TAT TAT TGT TAT TGT TAT
197753 TTA * 7 19/21 TTA TTG TTA TTA TTA TTG TTA
252240 TTC * 8 22/24 TTC TTC TTC TTC TTC ATC ATC TTC
252268 TCT * 8 22/24 TCT TCT TCA TCT TCT TCA TCT TCT
252303 TTC * 10 27/30 TTC TTC TTC TTC TTC TTC ATC ATC TTC ATC
252334 TCT * 7 19/21 TCT TCA TCT TCT TCT TCT TCC
276656 TTC * 11 31/33 TTC ATT TTC TTC TTC TTC TTC TTC TTC TTC TTC
283017 TTA * 7 19/21 TTA TTA CTA TTA ATA TTA TTA
304731 GAA * 7 19/21 GAA GAA GAA GAA GAA GAG GAT
379385 GTT * 7 19/21 GTT GTT GCT GTT GTT GTT GCT
379408 TGT * 13 36/39 TGT TGT TGT TGT TAT TGT TGT TGT TGT TGT TAG TGT TGT
398020 TTC * 10 27/30 TTC TTC TTC TTC TTC TTC TTC TTC TTC AAA
430473 ACC * 7 20/21 ACC TCC ACC ACC ACC ACC ACC
455685 ACT * 7 19/21 ACT ACT ACT ATT ACT ATT ACT
455706 ATT * 7 19/21 ATT ATT ATT ATT ATT ATA AAT
501016 TTG * 13 36/39 TTG CTG TTG TTG TTG TTG CTG TTG TTG TTG TTG TTC TTG
520948 ATA * 18 50/54 ATA ATA ATA ATA ATA ATA ATA ATA ATA AAA ATA GTA ATA ATA AAA ATA GTA ATA
521027 AAT * 11 30/33 AAT AAT AAT AAT AAT AAT AAT AAT ACT ACT ACT
521075 AAT * 15 42/45 AAT AAC AAT AAT ACT AAT AAT AAT AAT ACT AAT AAT AAT AAT AAT
522050 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAA CAA
522092 CAA * 7 19/21 CAA CAA CCA CAA CAG CAA CAA
536677 TCT * 38 103/114 TCT TCT TCT TTT TCT TCT TCT TCT TTT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCC TCT TCT TCT TCT TCT TCT TCT TCG TCA TCA TCA CCA TTA
595689 GAG * 7 19/21 GAG GAG GAG GAG GAG GAA GAT
606360 TTG * 15 41/45 TTG TTG TTG TTG TTG TTG TTG CTG TTG CTG TTG CTG TTG CTG TTG
618948 ATG * 7 19/21 ATG ATG ATT ATG ATG ATG ATA
650465 TAT * 41 111/123 TAT CAT TAT TAT TAT TAT TAT TAC TAT TAT TAC TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TGT TAT TGT TAT TAT TAT TGT TAT CAT TAT CAT TAT TGT TGT AGT TAT
650655 ATT * 8 22/24 ATT ATT ATA ATT GTT ATT ATT ATT
773589 AAT * 7 19/21 AAT AAC ATT AAT AAT AAT AAT
773614 TAA * 12 33/36 TAA TAG TAA TAA TGA TAA TAA TAA TAA TAA AAA TAA
774818 TCT * 12 33/36 TCT TCT CCT TCT TCT TCT TCT TCT TCT TCT TGC TCT
824402 TAA * 7 20/21 TAA CAA TAA TAA TAA TAA TAA
827516 TCT * 7 19/21 TCT TCT TCA TCT TCT TCA TCT
830688 TAT * 11 30/33 TAT TAT TAT TAT TAT TAT TAT TAT TAT CAT TCA
830971 TAT * 7 21/21 TAT TAT TAT TAT TAT TAT TAT
835073 CAA * 10 28/30 CAA CAA CAA CAA CAA CAA CAA CAA CAT CAG
868770 TCA * 7 19/21 TCA TCT TCA TCA TCA TCT TCA
897090 AAT * 18 50/54 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AGT AGT AGT AGT AAT
908161 CAG * 10 28/30 CAG CAG CAG CAG CAG CAG CAA CAG CAA CAG
942769 GTG * 7 19/21 GTG GCG GTG GTG GTA GTG GTG
-----------------------------------------------------------------------------------------
Total sequence length......................... 948061
Minimum Tri-Nucleotide repeat units........... 7
Total number of repeats detected.............. 54
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 4 1 1 1 1 0 0 0 0 0 0 0 0
ATA 1 0 0 0 1 0 0 0 0 0 0 0 0
ATT 2 2 0 0 0 0 0 0 0 0 0 0 0
ATG 2 2 0 0 0 0 0 0 0 0 0 0 0
ACA 2 2 0 0 0 0 0 0 0 0 0 0 0
ACT 1 1 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 3 1 2 0 0 0 0 0 0 0 0 0 0
TAT 4 2 1 0 0 0 0 0 0 0 0 0 1
TTA 3 3 0 0 0 0 0 0 0 0 0 0 0
TTG 2 0 0 2 0 0 0 0 0 0 0 0 0
TTC 5 2 3 0 0 0 0 0 0 0 0 0 0
TGT 2 0 0 2 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 3 3 0 0 0 0 0 0 0 0 0 0 0
TCT 7 5 1 0 0 0 0 0 0 0 0 1 0
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 2 2 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 2 1 1 0 0 0 0 0 0 0 0 0 0
CAG 3 1 2 0 0 0 0 0 0 0 0 0 0
CTT 1 0 0 1 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
4 AAT + 1 ATA + 3 TAA + 2 ATT + 3 TTA + 4 TAT = 17
0 AAG + 0 AGA + 1 GAA + 1 CTT + 5 TTC + 7 TCT = 14
0 AAC + 2 ACA + 2 CAA + 2 GTT + 2 TTG + 2 TGT = 10
2 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 3 TCA = 5
0 AGT + 0 GTA + 0 TAG + 1 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 1
0 AGC + 0 GCA + 3 CAG + 0 GCT + 0 CTG + 0 TGC = 3
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
1 ACC + 0 CCA + 0 CAC + 0 GGT + 1 GTG + 1 TGG = 3
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
-----------------------------------------------------------------------------------------
Tri-nucleotide repeats in Yeast Complete Genome sequences
Minimum tri-nucleotide repeating units = 7 (allowing 10% mismatch)
Total 16 sequences searched with a total of 12069248 bp length
Total 604 repeats covering 15426 / 16860 base pairs
Length distribution of all tri-nucleotide repeats
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
no. of repeat-units 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 >=40
total repeats 290 122 17 51 30 24 11 10 9 4 4 6 2 6 2 3 1 0 2 0 0 3 0 2 0 1 0 0 0 0 1 1 0 2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Length distribution of all tri-nucleotide repeats
No. of repeat units> 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
total repeats--> 429 105 30 14 10 4 2 5 1 0 2 2
AAT 12 5 2 2 2 1 0 0 0 0 0 0
AAG 10 2 2 0 0 0 0 0 0 0 0 0
AAC 8 2 0 0 0 0 0 0 0 0 0 0
ATA 8 1 2 2 2 1 0 0 0 0 0 0
ATT 12 2 0 1 1 0 0 1 0 0 0 0
ATG 11 0 3 0 0 0 0 0 0 0 0 0
ATC 8 1 0 0 0 0 0 1 0 0 0 0
AGA 12 5 0 0 0 0 0 0 0 0 0 0
AGT 1 0 0 0 0 0 0 0 0 0 0 0
AGC 6 2 0 0 0 0 0 0 0 0 0 0
ACA 12 5 1 0 0 1 0 0 0 0 0 0
ACT 3 0 0 1 0 0 0 0 0 0 0 0
ACG 6 1 0 0 0 0 0 0 0 0 0 0
ACC 5 0 0 0 0 0 0 0 0 0 0 0
TAA 11 4 1 0 0 0 0 1 0 0 0 0
TAT 16 4 2 0 0 0 0 1 0 0 1 1
TAC 1 1 0 0 0 0 0 0 0 0 0 0
TTA 12 3 1 0 1 1 0 1 0 0 0 1
TTG 18 4 3 1 0 0 0 0 0 0 0 0
TTC 19 7 2 0 0 0 0 0 0 0 0 0
TGA 7 2 1 0 1 0 0 0 0 0 0 0
TGT 16 7 2 0 0 0 1 0 1 0 0 0
TGG 2 0 0 0 0 0 0 0 0 0 0 0
TGC 11 3 0 0 0 0 0 0 0 0 0 0
TCA 29 6 2 2 2 0 0 0 0 0 0 0
TCT 27 2 0 0 0 0 0 0 0 0 1 0
TCG 5 1 0 0 1 0 1 0 0 0 0 0
TCC 2 2 0 0 0 0 0 0 0 0 0 0
GAA 17 4 1 0 0 0 0 0 0 0 0 0
GAT 12 1 0 1 0 0 0 0 0 0 0 0
GAG 5 1 0 0 0 0 0 0 0 0 0 0
GAC 2 0 1 0 0 0 0 0 0 0 0 0
GTA 2 0 0 0 0 0 0 0 0 0 0 0
GTT 9 2 0 1 0 0 0 0 0 0 0 0
GTG 3 0 0 0 0 0 0 0 0 0 0 0
GGA 3 0 0 0 0 0 0 0 0 0 0 0
GGT 3 0 0 0 0 0 0 0 0 0 0 0
GCA 8 3 0 0 0 0 0 0 0 0 0 0
GCT 2 1 0 0 0 0 0 0 0 0 0 0
GCC 1 0 0 0 0 0 0 0 0 0 0 0
CAA 17 7 1 1 0 0 0 0 0 0 0 0
CAT 8 2 0 1 0 0 0 0 0 0 0 0
CAG 20 7 1 0 0 0 0 0 0 0 0 0
CAC 1 0 0 0 0 0 0 0 0 0 0 0
CTA 1 0 0 0 0 0 0 0 0 0 0 0
CTT 5 1 1 1 0 0 0 0 0 0 0 0
CTG 11 4 0 0 0 0 0 0 0 0 0 0
CTC 3 0 0 0 0 0 0 0 0 0 0 0
CGA 1 0 0 0 0 0 0 0 0 0 0 0
CGT 2 0 0 0 0 0 0 0 0 0 0 0
CCA 2 0 1 0 0 0 0 0 0 0 0 0
CCT 1 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes in all sequences
24 AAT + 16 ATA + 17 TAA + 17 ATT + 20 TTA + 25 TAT = 119
14 AAG + 17 AGA + 22 GAA + 8 CTT + 28 TTC + 30 TCT = 119
10 AAC + 19 ACA + 26 CAA + 12 GTT + 26 TTG + 27 TGT = 120
14 ATG + 11 TGA + 14 GAT + 11 CAT + 10 ATC + 41 TCA = 101
1 AGT + 2 GTA + 0 TAG + 4 ACT + 1 CTA + 2 TAC = 10
0 AGG + 3 GGA + 6 GAG + 1 CCT + 3 CTC + 4 TCC = 17
8 AGC + 11 GCA + 28 CAG + 3 GCT + 15 CTG + 14 TGC = 79
7 ACG + 1 CGA + 3 GAC + 2 CGT + 0 GTC + 8 TCG = 21
5 ACC + 3 CCA + 1 CAC + 3 GGT + 3 GTG + 2 TGG = 17
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Frequency distribution of repeats longer than 40 bp
6 AAT + 6 ATA + 2 TAA + 3 ATT + 5 TTA + 4 TAT = 26
0 AAG + 0 AGA + 1 GAA + 2 CTT + 2 TTC + 1 TCT = 6
0 AAC + 2 ACA + 2 CAA + 1 GTT + 2 TTG + 3 TGT = 10
2 ATG + 1 TGA + 1 GAT + 1 CAT + 1 ATC + 6 TCA = 12
0 AGT + 0 GTA + 0 TAG + 1 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 1 CAG + 0 GCT + 0 CTG + 0 TGC = 1
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 2 TCG = 3
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Sequence-wise distribution of tri-nucleotide repeats
-----------------------------------------------------------------------------------------
Total Repeats-longer Sequence Number
Repeats than 40 bp 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
-------------------------------------------------------------------------------------------------------------------------------------
AAT 24 6 0 2 0 3 1 1 2 2 1 1 1 1 2 0 3 4
AAG 14 0 1 1 1 1 0 0 0 1 0 2 1 2 0 2 2 0
AAC 10 0 0 1 0 0 0 0 0 3 0 1 1 1 2 1 0 0
ATA 16 6 1 0 0 2 0 2 2 1 3 0 0 1 2 0 1 1
ATT 17 3 0 2 0 3 0 1 2 0 2 0 0 2 1 0 2 2
ATG 14 2 1 0 0 0 0 1 2 0 0 0 4 1 1 0 2 2
ATC 10 1 0 1 0 1 1 0 0 0 0 0 3 2 1 0 1 0
AGA 17 0 1 1 0 2 0 0 3 0 0 2 1 6 1 0 0 0
AGT 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
AGC 8 0 0 2 0 1 0 0 1 0 2 0 2 0 0 0 0 0
ACA 19 2 0 4 1 2 0 0 1 0 1 0 0 1 6 1 0 2
ACT 4 1 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 1
ACG 7 0 0 0 0 0 0 0 4 0 2 0 0 1 0 0 0 0
ACC 5 0 0 0 0 1 0 0 0 0 0 1 0 0 1 1 0 1
TAA 17 2 0 2 0 1 3 0 0 0 1 1 2 2 0 1 1 3
TAT 25 4 0 1 1 3 3 0 1 0 0 1 4 1 3 2 1 4
TAC 2 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
TTA 20 5 0 2 0 4 2 0 2 2 0 0 1 2 2 0 0 3
TTG 26 2 1 2 0 2 1 1 3 2 2 3 2 2 0 1 2 2
TTC 28 2 0 1 1 4 2 2 3 2 1 1 0 2 4 0 0 5
TGA 11 1 1 0 0 2 0 1 0 0 1 0 1 2 2 1 0 0
TGT 27 3 0 1 1 4 1 0 0 4 0 3 5 1 2 2 1 2
TGG 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1
TGC 14 0 1 0 2 1 1 1 2 2 1 0 1 0 0 1 1 0
TCA 41 6 0 0 1 5 5 2 6 6 2 2 2 2 1 1 3 3
TCT 30 1 0 0 1 2 1 0 1 0 0 0 1 1 5 5 6 7
TCG 8 2 0 0 0 1 0 0 0 0 1 0 1 2 0 0 3 0
TCC 4 0 0 0 0 0 0 0 0 0 2 0 1 0 0 0 1 0
GAA 22 1 1 2 0 5 0 0 4 1 0 1 3 1 1 1 1 1
GAT 14 1 1 2 0 2 0 0 3 0 1 1 0 1 2 0 1 0
GAG 6 0 0 0 0 0 0 0 0 0 0 0 2 1 1 1 0 1
GAC 3 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 2 0
GTA 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
GTT 12 1 1 0 0 2 0 0 2 0 0 0 1 2 2 0 0 2
GTG 3 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1
GGA 3 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0
GGT 3 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0
GCA 11 0 0 0 0 2 0 0 0 2 0 0 3 0 2 2 0 0
GCT 3 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 1 0
GCC 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
CAA 26 2 1 3 1 3 1 0 2 1 0 1 1 1 0 3 6 2
CAT 11 1 0 1 1 1 1 1 0 3 0 0 0 1 0 0 2 0
CAG 28 1 0 6 0 1 0 1 5 2 2 1 0 2 1 4 0 3
CAC 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
CTA 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
CTT 8 2 0 1 0 0 0 0 0 1 0 1 0 0 2 1 1 1
CTG 15 0 1 1 1 4 1 0 0 1 1 0 1 2 1 1 0 0
CTC 3 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0
CGA 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
CGT 2 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0
CCA 3 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 1 0
CCT 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
-------------------------------------------------------------------------------------------------------------------------------------
604 59
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© Division of Biochemical Sciences, National Chemical Laboratory, Pune 411008, INDIA