Di-Nucleotide Repeats in Yeast Complete Genome Sequences
Di-Nucleotide Repeats in Yeast Complete Genome Sequences
Genomic Sequence:..
gi|6319247|ref|NC_001133.1|| Saccharomyces cerevisiae chromosome I, complete chromosome sequence
Position Repeat Coverage Repeat
7 CA * 10 18/20 CA CA CC CA CA CA CC CA CA CA
31118 AT * 16 29/32 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT GG
31485 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA TA TA
51807 AT * 11 20/22 AT AT AT AT AT AT AT GT AT AT AA
57901 TA * 10 18/20 TA CA TA TA TA TA CA TA TA TA
87806 AT * 11 20/22 AT AT AT GT AT AT AT AC AT AT AT
110695 AG * 12 22/24 AG AG AG AG AG AG AG AG AG AG AA AA
119651 AT * 10 18/20 AT CT AT AT CT AT AT AT AT AT
139397 TA * 10 18/20 TA CA TG TA TA TA TA TA TA TA
169215 AT * 11 20/22 AT AC AT AT AT AT AT AT AT AC AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 230203
Minimum Di-Nucleotide repeat units............ 10
Mismatch allowed ............................. 10%
Total number of repeats detected.............. 10
-----------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 2 1 0 0 2 0 0 0 0 0 0
15 to 19 1 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 2 1 0 0 2 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 2 TA = 7
1 AG + 0 GA + 0 CT + 0 TC = 1
0 GT + 0 TG + 2 CA + 0 AC = 2
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|6319354|ref|NC_001134.1|| Saccharomyces cerevisiae chromosome II, complete chromosome sequence
Position Repeat Coverage Repeat
40575 AT * 18 34/36 AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AA
126104 AT * 10 18/20 AT AC AT AT AT AC AT AT AT AT
133834 AT * 13 24/26 AT AT AT AT AT AT AT AT AT AT AT AC AC
136421 AT * 13 24/26 AT AT GT AT AA AT AT AT AT AT AT AT AT
164402 AT * 10 18/20 AT AT AT AT AA AT AC AT AT AT
258942 AT * 13 24/26 AT AT AT AT CC AT AT AT AT AT AT AT AT
274270 TA * 11 20/22 TA AA TA TA TA TA TA TA TA TA TT
353556 AT * 25 45/50 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT GT GT GT GT
477046 AT * 12 23/24 AT GT AT AT AT AT AT AT AT AT AT AT
488639 GA * 10 18/20 GA GA GA AA GA AA GA GA GA GA
504315 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA CG CT
559717 AT * 16 29/32 AT AC AT AT AT AT AT AT AT AT AT AT AT AT TT AC
600367 AT * 11 21/22 AT AT AT AT AT AT GT AT AT AT AT
628850 AT * 12 22/24 AT AT AA GT AT AT AT AT AT AT AT AT
646043 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
646067 AT * 18 33/36 AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT CT
650221 AT * 10 18/20 AT AT AT AT AT AT AT AC AT TT
679459 GT * 11 20/22 GT GT GT GA GT GT GT GA GT GT GT
700295 AT * 11 20/22 AT AT AT AT AT AT AC AT AT AT AA
701963 TA * 25 45/50 TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA TA TT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 813140
Minimum Di-Nucleotide repeat units............ 10
Mismatch allowed ............................. 10%
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 11 1 0 1 0 1 0 1 0 0 0 0
15 to 19 3 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 1 1 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 15 2 0 1 0 1 0 1 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
15 AT + 2 TA = 17
0 AG + 1 GA + 0 CT + 0 TC = 1
1 GT + 0 TG + 1 CA + 0 AC = 2
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|6319780|ref|NC_001135.1|| Saccharomyces cerevisiae chromosome III, complete chromosome sequence
Position Repeat Coverage Repeat
84 CA * 10 18/20 CA CA CA CC CA CA CC CA CA CA
120 CA * 10 18/20 CA CA CC CA CA CA CA CC CA CA
263 CA * 10 18/20 CA CA CC CA CA CA CA CC CA CA
303 CA * 11 20/22 CA CA CA CC CA CA CC CA CA CA CA
9191 TA * 13 24/26 TA AA TA TA TA TA TA TA CA TA TA TA TA
22368 TA * 10 18/20 TA TA TA TA TA TA GA CA TA TA
50298 AT * 16 30/32 AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT GT
52375 TA * 13 24/26 TA TA TA TA TA TA TA TA TA TG TA TA TT
60749 AT * 10 18/20 AT AT AC AT AT AC AT AT AT AT
62721 AT * 11 21/22 AT AT AT AT AT AT AT AT AT AT AG
65844 AT * 12 22/24 AT AT AT AT AT GT AT AT AT AC AT AT
108503 AT * 10 18/20 AT AT AT AT AT AT AT AT TG AT
153673 AT * 10 18/20 AT AT AC AT AT AT AT AT AT AA
189003 TA * 14 26/28 TA TA TA TA TA TA TA TG TA TA TA TA TA AA
212600 TA * 11 20/22 TA TA TA TA TA TC TA TA TA CA TA
223006 TA * 18 33/36 TA TA TA TA TG TA TA TA TA TC TA TA TA TA TA TA TA TC
223503 TA * 13 24/26 TA TA TA TA TA TA TA TA TA TA TA TG TG
246696 TA * 16 29/32 TA TA TT TA TG TA TA TA TA TA TA TA TA TA TA TG
258022 AT * 13 24/26 AT AT AT TT AT AT AT AT AT AC AT AT AT
258749 TA * 17 31/34 TA TA TA TA TA TA TA TA TA TA CA TA TA CA TA TA AA
291290 TA * 13 24/26 TA TC AA TA TA TA TA TA TA TA TA TA TA
291849 AT * 10 18/20 AT AT AT AT AT AT AT AT AT TC
314237 TA * 16 29/32 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TC AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 315339
Minimum Di-Nucleotide repeat units............ 10
Mismatch allowed ............................. 10%
Total number of repeats detected.............. 23
-----------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 7 7 0 0 0 4 0 0 0 0 0 0
15 to 19 1 4 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 8 11 0 0 0 4 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
8 AT + 11 TA = 19
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 0 TG + 4 CA + 0 AC = 4
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|6319952|ref|NC_001136.1|| Saccharomyces cerevisiae chromosome IV, complete chromosome sequence
Position Repeat Coverage Repeat
56 CA * 10 18/20 CA CA CA CC CA CA CC CA CA CA
20522 TA * 21 39/42 TA CC TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT
33323 AT * 12 22/24 AT AT AC AT AT AT AT AT AT AT AT AA
56975 AT * 20 36/40 AT AT AT AC AT AC AT AT AT AT AT AT AT AT AT AA AT AT AT AG
147680 CA * 10 18/20 CA CA CA CA CA CA CA CA TA TA
169823 TA * 18 33/36 TA TA TA TA TA TG TA TA TA TA TA TA TA TA TA TA CA CA
211317 AT * 10 18/20 AT AT AT AT AT AT AT AT AT TC
226812 TA * 30 54/60 TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA TA TA TA TA TG TG TG TG
240138 AT * 11 21/22 AT AT AT AT AT AT AT AT AT AT AC
280230 AT * 10 18/20 AT AT AT AT GT AT AT AT AA AT
323677 AT * 18 33/36 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT GG
329637 TA * 17 31/34 TA TT TA TA TA TA TA TA TA TA TA TA TA TA TA TT TG
329777 TA * 11 20/22 TA TA TA TA AA TA TA TA TA TA CA
344004 TA * 15 28/30 TA TA TA TA TA TA TA TA TA TA TA TA TA AG TA
369415 CT * 10 18/20 CT CT CG CT CT CT TT CT CT CT
370962 TA * 16 29/32 TA TT TA TA TA TA TA TA TA TA TA TA TA TA TA AT
392143 AC * 15 27/30 AC AC AC AC AC AC AC AC AC AC AC AC AC CT TC
444479 AT * 15 27/30 AT AT AT AT AT AT AT AT GT AC AT AT AT AT AG
450185 TA * 12 23/24 TA TA TA TA TA TA TA TA TA TA TA TT
489437 AT * 13 24/26 AT AT AT AT AT AT AT AT AT AT AT AT TA
505225 TA * 12 23/24 TA CA TA TA TA TA TA TA TA TA TA TA
538724 TA * 18 33/36 TA GG TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT
558296 AT * 13 24/26 AT AT AT AT AT GT AT AT GT AT AT AT AT
561006 AT * 10 18/20 AT AT AT AT TT AT AT AC AT AT
620977 TA * 10 18/20 TA TA TA TA TA TA TA TA CA AA
681961 TA * 16 29/32 TA TA GA TA TA TA TA TA TA CA TA TA TA TA CA TA
691381 AT * 11 20/22 AT AT AT AT AT AT AT TT AT TT AT
697959 AT * 10 18/20 AT TT AT AT AT AT AT AT AG AT
810466 TA * 12 23/24 TA TA TA TA TA TA TA TA TA TA TA GA
812956 AT * 13 24/26 AT AT AT AT AT AT AT AT AT GT AT CT AT
840415 AT * 16 30/32 AT AT AT AT AT AT AT AT AT AT AT CT AT AT AT CT
843498 AT * 12 22/24 AT AT AT AT AT AT AT TC AT AT AT AT
864853 TA * 15 27/30 TA CA TA CA TA TA TA TA TA TA TA TA TA TA TG
930956 AT * 12 22/24 AT AT AT AT AT AT AT AT AT AT AT CC
974320 AT * 10 18/20 AT AT AT AT GT AT AT AT AT GT
1109869 AT * 11 20/22 AT AT AT AT AT AT AT AT AC AT AG
1212625 TA * 12 22/24 TA TA TA TA CA TA TA CA TA TA TA TA
1220995 TA * 10 18/20 TA TA TG TA TA TA CA TA TA TA
1224530 TA * 13 24/26 TA TA AA TA TA TA TA TA TA TA TA TG TA
1229214 AT * 13 24/26 AT AT AT AT AT AT AT GT AT AT AG AT AT
1239021 AT * 16 30/32 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TA
1321966 AT * 17 31/34 AT AT AC AT AT AT AT AT AT AT AT AT AT AC AT AT AA
1385461 AT * 21 38/42 AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT GT AC AT AT AC
1418448 TA * 17 31/34 TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA TT CA
1525369 GT * 10 18/20 GT GT GG GT GT GT GG GT GT GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 1531929
Minimum Di-Nucleotide repeat units............ 10
Mismatch allowed ............................. 10%
Total number of repeats detected.............. 45
-----------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 15 8 0 0 0 2 0 1 0 1 0 0
15 to 19 5 8 0 0 1 0 0 0 0 0 0 0
20 to 24 2 1 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 1 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 22 18 0 0 1 2 0 1 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
22 AT + 18 TA = 40
0 AG + 0 GA + 1 CT + 0 TC = 1
1 GT + 0 TG + 2 CA + 1 AC = 4
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|6320755|ref|NC_001137.1|| Saccharomyces cerevisiae chromosome V, complete chromosome sequence
Position Repeat Coverage Repeat
31455 AT * 16 29/32 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AC TT
67076 AT * 12 22/24 AT AC AT AT AA AT AT AT AT AT AT AT
118578 AT * 18 33/36 AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT GC AT AT
132566 AT * 17 31/34 AT AT AT AT AT AT AT AT AT AT AT GT AT GT AT GT AT
172598 AT * 11 21/22 AT AT AT AT AT AT AT AT AT GT AT
189384 AT * 11 20/22 AT AT AT AT AT AT AC AT GT AT AT
198592 TA * 13 24/26 TA TA TA TA TA TA TA TA TA TA TA CT TA
225773 AT * 20 36/40 AT AT AT GT TT AT AT AT AT AT AT AT AT AT AT AT GT AT AT AC
256303 TA * 13 25/26 TA TA TA TA TA TA TA TA TA TA TA TA AA
271462 AT * 10 19/20 AT AT AT AT AA AT AT AT AT AT
284383 AT * 21 38/42 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT GC GT
284427 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT GT AC
298047 TA * 13 24/26 TA TA TA AA TA TA TA AA TA TA TA TA TA
526943 AT * 10 18/20 AT AA AT AA AT AT AT AT AT AT
546498 TA * 10 18/20 TA TA TA TC TA TA TC TA TA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 576870
Minimum Di-Nucleotide repeat units............ 10
Mismatch allowed ............................. 10%
Total number of repeats detected.............. 15
-----------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 4 0 0 0 0 0 1 0 0 0 0
15 to 19 3 0 0 0 0 0 0 0 0 0 0 0
20 to 24 2 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 10 4 0 0 0 0 0 1 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
10 AT + 4 TA = 14
0 AG + 0 GA + 0 CT + 0 TC = 0
1 GT + 0 TG + 0 CA + 0 AC = 1
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|6321039|ref|NC_001138.1|| Saccharomyces cerevisiae chromosome VI, complete chromosome sequence
Position Repeat Coverage Repeat
4684 AC * 10 18/20 AC CC AC AC AC CC AC AC AC AC
4710 CA * 10 18/20 CA CA CA CC CA CA CC CA CA CA
11242 CA * 11 20/22 CA CA CA CA CA CA CA CA CA TA TA
38776 TA * 10 18/20 TA CA TA TA TA TA CA TA TA TA
57868 AT * 11 20/22 AT AT AT AT AT GT AT AT GT AT AT
58000 AT * 17 32/34 AT AT AG AT AT AT AT AT AT AT AT AT AT AT AT AT AG
62887 TA * 11 20/22 TA CA TA TA TA TA TA TA TA CA TA
68945 TA * 12 23/24 TA CA TA TA TA TA TA TA TA TA TA TA
78009 AT * 18 33/36 AT AT AT AT AT AT AT AT AT AT AT AT GT AC CT AT AT AT
95066 AT * 12 23/24 AT AT AT AT AT AT AT GT AT AT AT AT
96023 AT * 14 26/28 AT AT AT AT AT AT AG AT AT AT AT AT AC AT
103196 TA * 13 24/26 TA TA TG TA TA TA TA TA TC TA TA TA TA
103930 TA * 11 20/22 TA TA TA TA TA TA TA TA TA TG TC
107804 TG * 15 27/30 TG TA TG TA TG TG TG TG TG TG TG TG TG TG CG
182857 GT * 11 20/22 GT GT AT GC GT GT GT GT GT GT GT
182980 TA * 13 24/26 TA CA TA TA TA TA TA TA TA TA TG TA TA
208372 AT * 10 18/20 AT AT AT AT AT AT AT AA AA AT
210332 TG * 37 67/74 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG AT TG TT GT TC TA
268194 AT * 10 18/20 AT AT AT AT AT AT AT TT AA AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 270148
Minimum Di-Nucleotide repeat units............ 10
Mismatch allowed ............................. 10%
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 6 0 0 1 2 0 1 0 0 0 0
15 to 19 2 0 0 0 0 0 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 1 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 7 6 0 0 1 2 2 1 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
7 AT + 6 TA = 13
0 AG + 0 GA + 0 CT + 0 TC = 0
1 GT + 2 TG + 2 CA + 1 AC = 6
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|6321173|ref|NC_001139.1|| Saccharomyces cerevisiae chromosome VII, complete chromosome sequence
Position Repeat Coverage Repeat
43204 AT * 10 18/20 AT AT AT TT AT AT TT AT AT AT
69352 AC * 20 36/40 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AA TA TC
75473 AG * 11 21/22 AG AG AG AG AG AG AG AG AG AG AT
78997 TA * 25 46/50 TA TG TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA TA TC AA
82355 TA * 10 18/20 TA TA TA TA TA CA TA TA TA TG
122525 AT * 10 18/20 AT AT AT AT GT AT AT AT TT AT
156110 TA * 27 49/54 TA TA TA TA TG TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TT TA TT TA TT TA
163140 TA * 10 18/20 TA TA TA TA TA TA TA AA TG TA
270274 AT * 16 29/32 AT AT AT AT AT AC AT AT AT AT AT GT AT AT AT GT
272296 AT * 13 24/26 AT AT AT AT AT AT AT AT AT AT AT GT TT
272327 TA * 12 22/24 TA TA TA TA TA TA TA CG TA TA TA TA
274694 TA * 13 24/26 TA TA CC TA TA TA TA TA TA TA TA TA TA
298092 AT * 10 18/20 AT AT AT AT AT AT AT AC AT AC
307178 AT * 21 38/42 AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AC AT AT AT AT GA
321483 TA * 12 22/24 TA CA TA TA TA TA TA TA TA TA TA TT
531833 AT * 21 38/42 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA AG GT
580383 TA * 11 21/22 TA TA TA TA TA TT TA TA TA TA TA
593352 AT * 12 22/24 AT AC AT AT AT AT AT AT AT AT AT AA
611733 AT * 13 24/26 AT AT CC AT AT AT AT AT AT AT AT AT AT
644767 AT * 18 34/36 AT AT AT AT AT AT AT GT AT AT AT AT AT AT AT AT AT AA
669999 AT * 12 22/24 AT AA AT AT AC AT AT AT AT AT AT AT
675521 AT * 10 18/20 AT AT AT AT AT AT AT AT AT GC
741728 TA * 10 18/20 TA TA TA GA TA TA TG TA TA TA
808381 TA * 17 31/34 TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TG AA
848506 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AA TT
855197 TA * 11 20/22 TA TA TA TA AA TA TA TA TA AA TA
885989 AT * 11 20/22 AT AT AT AT AT AT GT AT GT AT AT
940833 TA * 11 20/22 TA TA CA TA TA TA TA TA TT TA TA
949243 TA * 12 23/24 TA TA TA TA TA TA TA TA TA TA TA TG
959773 AT * 12 23/24 AT AT AT AT AT AT AT AT AT AT AT AA
994960 TA * 10 18/20 TA TA TA TA CA TA TA CA TA TA
1004505 AT * 12 22/24 AT AT AT AT AT AT AT AT AT AT AT GG
1043758 TA * 25 45/50 TA TG CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA TA TT TA TA CA
1063411 AT * 10 18/20 AT AT AT AT AT AT AT AT GT GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 1090936
Minimum Di-Nucleotide repeat units............ 10
Mismatch allowed ............................. 10%
Total number of repeats detected.............. 34
-----------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 13 11 1 0 0 0 0 0 0 0 0 0
15 to 19 2 1 0 0 0 0 0 0 0 0 0 0
20 to 24 2 0 0 0 1 0 0 0 0 0 0 0
25 to 29 0 3 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 17 15 1 0 1 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
17 AT + 15 TA = 32
1 AG + 0 GA + 0 CT + 0 TC = 1
0 GT + 0 TG + 0 CA + 1 AC = 1
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|6862570|ref|NC_001140.2|| Saccharomyces cerevisiae chromosome VIII, complete chromosome sequence
Position Repeat Coverage Repeat
32831 AT * 11 20/22 AT AG AT AT TT AT AT AT AT AT AT
56551 TA * 10 18/20 TA TA TA TA TT TA TA TA CA TA
75973 AT * 16 29/32 AT AT AT AT AT AT AT AT AT AT AT AT AT AT CT CA
111524 TA * 14 26/28 TA TA TA TA TA TA TA TA TA TA TA TA TA CT
123922 AG * 16 29/32 AG AG AG AA AG AG AA AG AG AG AG AG AG AG AG AA
167611 AT * 15 28/30 AT AT AT AC AT AT AT AT AT AT AT AT AT AC AT
168772 TA * 11 20/22 TA TA TA TA TA TA TA TT TG TA TA
212049 AT * 10 18/20 AT AT GT AT AT AT CT AT AT AT
314728 AT * 10 18/20 AT AT AT AT AT AT AT AT AA AC
340061 TA * 17 32/34 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA GC
370545 AT * 16 30/32 AT AT AT AT AT AT AT AT AT AT AT AT GT AT GT AT
465799 TA * 22 40/44 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA AA TT CC TA
475928 TA * 13 24/26 TA TA TA TA TA TA TA TA TA TA TA TC TC
514826 TA * 17 31/34 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA GC CA
556885 GT * 10 18/20 GT GT GT GT GG GT GT GG GT GT
556906 GT * 10 18/20 GT GT GG GT GT GG GT GT GT GT
556928 GT * 17 31/34 GT GT GT GT GT GT GG GT GT GT GT GG GT GT GG GT GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 562639
Minimum Di-Nucleotide repeat units............ 10
Mismatch allowed ............................. 10%
Total number of repeats detected.............. 17
-----------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 4 0 0 0 0 0 2 0 0 0 0
15 to 19 3 2 1 0 0 0 0 1 0 0 0 0
20 to 24 0 1 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 6 7 1 0 0 0 0 3 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
6 AT + 7 TA = 13
1 AG + 0 GA + 0 CT + 0 TC = 1
3 GT + 0 TG + 0 CA + 0 AC = 3
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|6322016|ref|NC_001141.1|| Saccharomyces cerevisiae chromosome IX, complete chromosome sequence
Position Repeat Coverage Repeat
31 CA * 10 18/20 CA CA CC CA CA CC CA CA CA CA
11364 TA * 16 29/32 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TC CC
28540 TA * 10 18/20 TA TA TA TA TA TA TA TA TA GC
57317 AT * 11 20/22 AT AT AT AT GT AT AT AT AC AT AT
144115 TA * 18 33/36 TA TA TA TA TA TA TA TA TA TA TA TA CA TA TA TA AA GA
177358 AT * 12 22/24 AT AT AT AT AT GT AT GT AT AT AT AT
177464 AT * 16 29/32 AT AT AT AT AT AT AT AT AT AT GT AT AT GT AA AT
180247 CT * 10 18/20 CT CT CT CT TT CT CT CT CT TT
363041 TA * 11 20/22 TA TA TA TA TA TA TA TA TA TT TC
377222 AT * 10 18/20 AT TT AT AT AT AC AT AT AT AT
383422 AT * 11 20/22 AT AA AT AT AC AT AT AT AT AT AT
419473 TA * 10 18/20 TA CG TA TA TA TA TA TA TA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 439885
Minimum Di-Nucleotide repeat units............ 10
Mismatch allowed ............................. 10%
Total number of repeats detected.............. 12
-----------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 3 0 0 0 1 0 0 0 1 0 0
15 to 19 1 2 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 5 0 0 0 1 0 0 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 5 TA = 10
0 AG + 0 GA + 1 CT + 0 TC = 1
0 GT + 0 TG + 1 CA + 0 AC = 1
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|6322236|ref|NC_001142.1|| Saccharomyces cerevisiae chromosome X, complete chromosome sequence
Position Repeat Coverage Repeat
14 CA * 10 18/20 CA CA CC CA CA CC CA CA CA CA
11347 TA * 16 29/32 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TC CC
76562 AT * 12 23/24 AT AT AT AT AT AT AT AT AT AT AT AA
96813 TA * 10 18/20 TA CA TA TA TA TA TA TA TT TA
146554 AT * 10 18/20 AT AT AG AT AT GT AT AT AT AT
177609 AT * 17 31/34 AT AT AT AT AT AT GA AT AT AT AT AT AT AT AT AT GT
193272 AT * 10 18/20 AT AT AT TT AT AT AT AT GT AT
307611 TA * 10 18/20 TA TC TA TA TA AA TA TA TA TA
316771 TA * 15 27/30 TA TA TG TA TA TA TA TA TA TA TA TA GA TA TG
377092 TA * 10 19/20 TA TA TA TA TA CA TA TA TA TA
386026 AT * 11 20/22 AT AT AT AC AT AT AT AT AT AT GT
393368 TA * 11 20/22 TA TT TA TA TA TA TA TA TA TA CA
423855 AT * 17 31/34 AT AC AG AT AT AT AT AT AT AT AT AT AT AT AT CT AT
448540 TA * 10 19/20 TA TA TA TA TA TA TA TA TG TA
455748 AT * 25 45/50 AT AT GG AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AA AC
464035 AT * 13 24/26 AT AA AT AT TT AT AT AT AT AT AT AT AT
496787 AT * 10 19/20 AT AT AT AT AT AT AT AT AT AC
496992 AT * 12 23/24 AT AT AT AT AT AT AT AT AT AT AT AA
518944 GT * 23 42/46 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GA TT CC
539309 TA * 10 18/20 TA CA TA TA TA CA TA TA TA TA
576714 AT * 13 24/26 AT AT AT AT AT AT AT AT AT AT TT AT AA
639680 AC * 23 42/46 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AT AT AT AT
641392 AC * 10 18/20 AC AC AC AC AC AC AC AT AC AT
658340 CT * 13 24/26 CT CT TT CT CT CT CT TT CT CT CT CT CT
666914 TA * 11 20/22 TA TA TA TA TA TA TA TA TA TC CA
677076 TA * 10 18/20 TA GT TA TA TA TA TA TA TA TA
701431 AC * 22 40/44 AC AA TC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AT AC GC
-----------------------------------------------------------------------------------------
Total sequence length......................... 745440
Minimum Di-Nucleotide repeat units............ 10
Mismatch allowed ............................. 10%
Total number of repeats detected.............. 27
-----------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 8 8 0 0 1 1 0 0 0 1 0 0
15 to 19 2 2 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 2 0 0 1 0 0 0 0
25 to 29 1 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 11 10 0 0 3 1 0 1 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
11 AT + 10 TA = 21
0 AG + 0 GA + 1 CT + 0 TC = 1
1 GT + 0 TG + 1 CA + 3 AC = 5
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|6322623|ref|NC_001143.1|| Saccharomyces cerevisiae chromosome XI, complete chromosome sequence
Position Repeat Coverage Repeat
26593 AT * 17 32/34 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TG
36590 AT * 17 31/34 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT CT TC
42286 AT * 10 18/20 AT AT GT AT AT AT AT AT GT AT
78802 TA * 13 24/26 TA TA TA TA TA TA TA TA TA TA TA TG TT
80056 TA * 10 19/20 TA TA TA GA TA TA TA TA TA TA
83669 AT * 12 22/24 AT AT AT AC AT AT AT AT AT GT AT AT
114771 AT * 13 24/26 AT AT AC AT AT AT AT AT AT AT AT AT GT
136097 TA * 17 31/34 TA TA TG TA CA TA TA TA TA TA TA TA TA TA TA TA TT
164847 TA * 21 38/42 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA AC TT
173901 AT * 10 19/20 AT AT AT AT AT AT TT AT AT AT
179251 TA * 15 28/30 TA TA TA TA TA TA TA TA TC TA TA TA CA TA TA
212074 TA * 11 20/22 TA TA TC TA AA TA TA TA TA TA TA
280572 TA * 17 31/34 TA TA TA TA TA GA TA TA TA TA TA TA TA TA TG TA TC
280621 AT * 10 18/20 AT AC AT AT AT AT AT AT CT AT
378577 TA * 11 20/22 TA TG TA CA TA TA TA TA TA TA TA
464807 TA * 12 22/24 TA CG TA TA TA TA TA TA TA TA TA TA
464832 AT * 10 18/20 AT AT AT AT AT AT AT AT TC AT
511576 AT * 11 21/22 AT AT AT AA AT AT AT AT AT AT AT
524930 AT * 10 18/20 AT GT AT AT AC AT AT AT AT AT
579364 TA * 11 20/22 TA CA TA TA TA TA TA TA TA TA TG
580519 AT * 11 20/22 AT AT AT AT AT AT AT AT AT GT TT
660176 AT * 12 22/24 AT CT AT AT AT AT GT AT AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 666445
Minimum Di-Nucleotide repeat units............ 10
Mismatch allowed ............................. 10%
Total number of repeats detected.............. 22
-----------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 10 6 0 0 0 0 0 0 0 0 0 0
15 to 19 2 3 0 0 0 0 0 0 0 0 0 0
20 to 24 0 1 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 12 10 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
12 AT + 10 TA = 22
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 0 TG + 0 CA + 0 AC = 0
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|6322960|ref|NC_001144.1|| Saccharomyces cerevisiae chromosome XII, complete chromosome sequence
Position Repeat Coverage Repeat
54 CA * 11 20/22 CA CA CC CA CA CA CC CA CA CA CA
5689 CA * 10 18/20 CA CA CC CA CA CC CA CA CA CA
11213 CA * 12 22/24 CA CA CC CA CA CA CA CA CA CC CA CA
11239 CA * 15 27/30 CA CA CC CA CA CA CA CA CA CC CA CA CA CA CC
11304 CA * 10 18/20 CA CA CA CC CA CA CC CA CA CA
11331 CA * 10 18/20 CA CA CC CA CA CC CA CA CA CA
41216 TA * 25 46/50 TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA CT TT
52019 AT * 13 24/26 AT AT AT AT AT AT AT AT AT AT TT AC AT
125393 TA * 13 24/26 TA AA TT TA TA TA TA TA TA TA TA TA TA
170675 TA * 18 33/36 TA TA TA CA TA TA TA TA TA TA TA TA TA TA TG TA TA TG
172015 TA * 18 34/36 TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG
243824 TA * 12 22/24 TA TA CA TA TA TA TA TA TA TA TA TT
245258 AT * 12 23/24 AT AT AT AT AT AT AT AT AT AT GT AT
248519 AT * 11 20/22 AT AC AT AT AT AT AT AC AT AT AT
262827 AT * 10 18/20 AT AT AT AT AT CT AT AT AT AG
274055 AT * 10 18/20 AT AT TA AT AT AT AT AT AT AT
339670 TA * 15 27/30 TA TG TA TT TA TA TA TA TA TA TA TA TA TA TG
342867 TA * 10 18/20 TA CA TA TG TA TA TA TA TA TA
434093 AT * 10 18/20 AT AT TA AT AT AT AT AT AT AT
445325 AT * 10 18/20 AT AT AT CT AT AC AT AT AT AT
513136 AT * 13 24/26 AT AC AT AT AC AT AT AT AT AT AT AT AT
556469 AT * 14 26/28 AT AT AT AT AT AT AT AT AT AT AT AT AT TA
563477 AC * 20 36/40 AC AC AC AC AC AC AC AC AC AC AC AT AC AC AT AT AC AC AC AT
563517 AT * 12 23/24 AT AT AT AT AT AT AG AT AT AT AT AT
645755 TC * 10 18/20 TC TC TC TC TC TC TC TT CC TC
687585 AT * 12 22/24 AT GT AT AT AT AT AT AT AT AT AT AC
725865 TA * 10 18/20 TA TA TA GA TA CA TA TA TA TA
757467 AG * 17 31/34 AG AG AT AG AG AT AG AG AG AG AG AG AG AG AG AG AT
769162 AT * 13 24/26 AT AT AT AT AT AT AT AT AT AC AT AT AG
823441 GA * 36 65/72 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA TG AG GG TT
827955 TA * 10 18/20 TA TA TC CA TA TA TA TA TA TA
829397 AT * 18 33/36 AT AT AT GT AT AT AT AT AT AT AT AT AT AT GT AT GT AT
837515 AT * 17 31/34 AT AT AT AT AT AT AT AT AT AT GT AT AT GT GT AT AT
873638 AT * 15 28/30 AT AT AT AT AT AT AA AT AT AT AT AT AT AT AA
881937 AT * 16 30/32 AT TT AT AT AC AT AT AT AT AT AT AT AT AT AT AT
1015474 TA * 12 22/24 TA AA TA TA TA TA TA TA TA TA TA TC
1065025 GT * 12 22/24 GT GT GT GT GT GT GT GT GG GT GT GG
1065049 TG * 10 18/20 TG TG TG GG TG TG TG GG TG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 1078172
Minimum Di-Nucleotide repeat units............ 10
Mismatch allowed ............................. 10%
Total number of repeats detected.............. 38
-----------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 12 6 0 0 0 5 1 1 1 0 0 0
15 to 19 4 3 1 0 0 1 0 0 0 0 0 0
20 to 24 0 0 0 0 1 0 0 0 0 0 0 0
25 to 29 0 1 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 1 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 16 10 1 1 1 6 1 1 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
16 AT + 10 TA = 26
1 AG + 1 GA + 0 CT + 1 TC = 3
1 GT + 1 TG + 6 CA + 1 AC = 9
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|6323501|ref|NC_001145.1|| Saccharomyces cerevisiae chromosome XIII, complete chromosome sequence
Position Repeat Coverage Repeat
21960 TA * 18 33/36 TA TA TA TA TA TA TA TA TA TA TA TG TA TA TA CA TA TG
28142 TG * 10 18/20 TG TG CG TG TG TG TG TG TG TT
54603 TA * 10 18/20 TA TA TA CA TA TA AA TA TA TA
95728 TA * 11 21/22 TA TA TA TA TA TA TA TA TA TA TT
99600 AT * 11 20/22 AT AT AT AT AT AT AT AT AT GT AA
159846 TA * 17 31/34 TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TG TC
239354 AT * 21 38/42 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT GC AT AT GT
241930 TA * 10 18/20 TA TA TA TA TG TT TA TA TA TA
256055 TA * 11 21/22 TA TA TA TA TA TA TC TA TA TA TA
263300 AT * 10 18/20 AT AA AT AT AT AC AT AT AT AT
321328 AT * 13 24/26 AT AT AT AT AT AT AT AT AT AT AT AC AA
388684 TA * 18 34/36 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TG TA
538607 CA * 18 34/36 CA CA CA CA CA CA CA CA CA CA CA CA CT CA CT CA CA CA
561877 AT * 21 38/42 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT TT AT AC AC
622165 AT * 14 26/28 AT GT AT AT AT AT AT AT AT AT AT AT AT AC
646855 AT * 17 32/34 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT GT
654916 AT * 10 19/20 AT AT AT AT AT AT AT AT AT AC
703390 TA * 10 18/20 TA TA TA TA TA TA TA TA TA AG
778808 TA * 10 18/20 TA TA TA TG TA TA TA TA AA TA
859165 TA * 10 18/20 TA TA AA TA TT TA TA TA TA TA
861851 AG * 10 18/20 AG AG AG AG AG AG AG AA AG AA
865451 AT * 10 18/20 AT AT AT AT AT AT AT AT TT AG
878813 AT * 10 18/20 AT AT AT AT AT AT AT AT AA GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 924430
Minimum Di-Nucleotide repeat units............ 10
Mismatch allowed ............................. 10%
Total number of repeats detected.............. 23
-----------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 7 7 1 0 0 0 1 0 0 0 0 0
15 to 19 1 3 0 0 0 1 0 0 0 0 0 0
20 to 24 2 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 10 10 1 0 0 1 1 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
10 AT + 10 TA = 20
1 AG + 0 GA + 0 CT + 0 TC = 1
0 GT + 1 TG + 1 CA + 0 AC = 2
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|6323989|ref|NC_001146.1|| Saccharomyces cerevisiae chromosome XIV, complete chromosome sequence
Position Repeat Coverage Repeat
13146 CA * 11 20/22 CA CA CA CA CA CA CA CA CA TA TA
43274 AT * 13 24/26 AT TA AT AT AT AT AT AT AT AT AT AT AT
118864 TA * 10 18/20 TA TA TC TA TA TT TA TA TA TA
187951 AT * 11 20/22 AT AT AC AT AT AT AA AT AT AT AT
217178 AT * 13 24/26 AT AT AT AT AC AT AC AT AT AT AT AT AT
235875 AT * 10 18/20 AT AT AG AT AT AT AT AT AT TT
255063 TA * 10 18/20 TA TC TA TA TA TA CA TA TA TA
326660 AT * 10 18/20 AT AC AT AT AT TT AT AT AT AT
418908 AT * 11 21/22 AT AT GT AT AT AT AT AT AT AT AT
427005 TA * 11 20/22 TA TA TA TA TA TA AA TA TA CA TA
429770 TA * 12 22/24 TA AT TA TA TA TA TA TA TA TA TA TA
441293 AT * 10 19/20 AT AT AT AT AT AT GT AT AT AT
476886 AT * 10 18/20 AT AT AC AT AT AC AT AT AT AT
512454 TA * 15 27/30 TA CA TA TA TA TA TA TA TA TA TA TA TA TC AA
525533 AT * 10 18/20 AT AT AT AT GT AT AT AT CT AT
605717 TA * 28 51/56 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA CA TA TA TA TA TA CG AA TA TA TT TA
606157 AT * 12 22/24 AT TT AA AT AT AT AT AT AT AT AT AT
638901 AT * 11 20/22 AT AT AT AC AT AC AT AT AT AT AT
644215 TA * 12 23/24 TA TA TA TA TA TA TA TA TA TA CA TA
663595 CT * 17 32/34 CT CT CT CT CT CT CT TT CT CT CT CT CT CT CC CT CT
694234 AT * 17 32/34 AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT
694964 TA * 10 19/20 TA TA TA TA TA TA TA TA TA CA
764737 AT * 12 23/24 AT AT AT AT AT AT AT AT AT TT AT AT
777549 AT * 15 27/30 AT AT AT AT AT AT AT AT AT AT AT AT AT AC GC
784046 GT * 11 20/22 GT GT GT GT GG GT GT GT GG GT GT
784126 GT * 11 20/22 GT GT GT GG GT GT GT GT GG GT GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 784328
Minimum Di-Nucleotide repeat units............ 10
Mismatch allowed ............................. 10%
Total number of repeats detected.............. 26
-----------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 12 6 0 0 0 1 0 2 0 0 0 0
15 to 19 2 1 0 0 0 0 0 0 0 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 1 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 14 8 0 0 0 1 0 2 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
14 AT + 8 TA = 22
0 AG + 0 GA + 1 CT + 0 TC = 1
2 GT + 0 TG + 1 CA + 0 AC = 3
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|6324406|ref|NC_001147.1|| Saccharomyces cerevisiae chromosome XV, complete chromosome sequence
Position Repeat Coverage Repeat
35 CA * 12 22/24 CA CA CC CA CA CA CA CA CA CA CA CC
59 AC * 11 20/22 AC AC CC AC AC AC AC CC AC AC AC
1086 AT * 13 25/26 AT AT AT AT AT AT AT AT AT AT AT AT AG
45691 AT * 23 42/46 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA GG AA
81640 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TT TG TG TA TG TA
94738 AT * 10 18/20 AT AT GT AT AT AT GT AT AT AT
106323 AT * 11 20/22 AT AT AT AT AT AT AT GT AT AT AC
138046 TA * 10 19/20 TA TA TA TA TA TA TT TA TA TA
238353 AT * 10 19/20 AT AT AT AT AT AT AT AT AC AT
241542 TA * 12 22/24 TA TA TA TA TA TA TT TA TA TA TG TA
301305 TG * 10 18/20 TG TG TG TG TG TG TG TG TT TT
326193 TA * 16 29/32 TA CA TA TA TA TA TA TA TA TA TA TA TA TA TC TG
355083 AT * 22 40/44 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT TG TT AT
489774 AT * 11 20/22 AT CC AT AT AT AT AT AT AT AT AT
537051 TA * 18 33/36 TA AT TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA TA
580122 AT * 10 18/20 AT AT TT AT AT AA AT AT AT AT
586834 CA * 10 18/20 CA CA CA CA CA CA CA TA CG CA
651745 AT * 13 24/26 AT AT AT GT AT AT AT TT AT AT AT AT AT
667551 AT * 18 33/36 AT GT AT AT AT AG AT AT AT AT AT AT AT AT AT AT AT AA
679222 TA * 10 18/20 TA TA TG TA TG TA TA TA TA TA
836469 TG * 10 18/20 TG TG TG TG TA TG TG TG TG TA
854981 AT * 16 30/32 AT AT AT AT AA AT AT AT AT AT AT AT AT AT AT AG
911736 AT * 12 22/24 AT AC AT AT AT AT AT AT AT AT AA AT
923118 AT * 18 33/36 AT AT AT AT AT AT AT AT AT AT GT AT AT AG AT GT AT AT
998325 AT * 17 31/34 AT AA AT AT AT AA AT AT AT AT AT AT AT AT AT AT AA
1013010 TA * 13 24/26 TA TG TA TC TA TA TA TA TA TA TA TA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 1091283
Minimum Di-Nucleotide repeat units............ 10
Mismatch allowed ............................. 10%
Total number of repeats detected.............. 26
-----------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 8 4 0 0 1 2 2 0 0 0 0 0
15 to 19 4 2 0 0 0 0 1 0 0 0 0 0
20 to 24 2 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 14 6 0 0 1 2 3 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
14 AT + 6 TA = 20
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 3 TG + 2 CA + 1 AC = 6
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|6324971|ref|NC_001148.1|| Saccharomyces cerevisiae chromosome XVI, complete chromosome sequence
Position Repeat Coverage Repeat
73047 TG * 10 18/20 TG TG TG TG TA TG TG TG TG TT
73293 TA * 10 18/20 TA TA AA TA TA TA TA TA TA GA
73961 AT * 11 20/22 AT AT AT AT AC AT AT AT AT AT TT
76349 CT * 12 22/24 CT CT GC CT CT CT CT CT CT CT CT CT
126531 AT * 12 23/24 AT AT AT AT AT AT AC AT AT AT AT AT
132259 TA * 13 24/26 TA TA TA TA TA CA TA TA TA TA TA TA CA
139578 TA * 17 31/34 TA TA CA TA TA TA TA TG TA TA TA TA TA TA TA TA CA
162374 TA * 14 26/28 TA TA TA TA TA TA TA TA TA TA TA TT TA TT
212823 AT * 12 22/24 AT AT AT AT AT AT AT AT AT AT AT TA
239118 TA * 15 27/30 TA TA TA TA TA TA TA TA TA TA TT CA TA TA AA
244243 AT * 15 28/30 AT AT TT AT AT AT AT AT AT AT AT AT AT AC AT
298498 AT * 11 20/22 AT AA AT AT AT AT AT AT AT AT AC
312942 TA * 18 33/36 TA TA TA TA TA TA TA TA TA TA TA TA TA TG TT TA TA AA
381844 TA * 15 27/30 TA TA TA TA TA TA TA TA TA TA TA TA TA TT AG
451486 TA * 12 22/24 TA TA TT TA TA TA TA TA TA TA TA AA
460661 TA * 13 24/26 TA TA TA TA TA TA TA TA TG AA TA TA TA
462401 GT * 11 20/22 GT GT GT GT GT GA GT GC GT GT GT
485923 CA * 18 33/36 CA CA CA CA CA CA CA CA CA CA CA CA CA AA CA AA CA TA
517264 GT * 10 18/20 GT GT GT GC GT GT GT GT AT GT
575152 AT * 10 18/20 AT AT AT AT AT AT AT AT AC AC
591716 AT * 13 24/26 AT AT AT AT AT AT AT AT AT AT AT AA TT
711354 AT * 10 18/20 AT AC AT AC AT AT AT AT AT AT
773755 TA * 11 20/22 TA TA TA TA CA TA TA TA TA GA TA
813103 AT * 10 18/20 AT AT AT AT AT AA AT AT GT AT
876239 TA * 11 20/22 TA TA TA TA TA TA TA TA TA TA CT
906721 TA * 12 22/24 TA TA TA TA CA TA TA TA TA TA TT TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 948061
Minimum Di-Nucleotide repeat units............ 10
Mismatch allowed ............................. 10%
Total number of repeats detected.............. 26
-----------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 8 8 0 0 0 0 1 2 0 1 0 0
15 to 19 1 4 0 0 0 1 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 9 12 0 0 0 1 1 2 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
9 AT + 12 TA = 21
0 AG + 0 GA + 1 CT + 0 TC = 1
2 GT + 1 TG + 1 CA + 0 AC = 4
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Di-Nucleotide repeats in Yeast Complete Genome sequences
Minimum di-nucleotide repeating units = 10 (allowing a maximum of 10% mismatch)
Total 383 repeats covering 9293 / 10152 base pairs
Length distribution of all di-nucleotide repeats
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
no. of repeat-units 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 >=50
total repeats 116 61 48 41 6 17 20 24 21 0 4 8 3 3 0 6 0 1 1 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Length distribution of different di-nucleotide repeat classes
no. of repeat-units 10-14 15-19 20-24 25-29 30-34 35-39 40-44 45-49 >=50
total repeats--> 272 82 18 8 1 2 0 0 0
AT 132 37 10 2 0 0 0 0 0
TA 91 35 3 6 1 0 0 0 0
AG 3 2 0 0 0 0 0 0 0
GA 1 0 0 0 0 1 0 0 0
AC 3 1 4 0 0 0 0 0 0
CA 21 3 0 0 0 0 0 0 0
TG 5 2 0 0 0 1 0 0 0
GT 11 1 1 0 0 0 0 0 0
TC 1 0 0 0 0 0 0 0 0
CT 4 1 0 0 0 0 0 0 0
GC 0 0 0 0 0 0 0 0 0
CG 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------
Sequence-wise distribution of di-nucleotide repeats
Sequence AT TA AG GA AC CA TG GT TC CT GC CG
--------------------------------------------------------------------------------------------------------
gi|6319247|ref|NC_001133.-( 230203 bp) 5 2 1 0 0 2 0 0 0 0 0 0
gi|6319354|ref|NC_001134.-( 813140 bp) 15 2 0 1 0 1 0 1 0 0 0 0
gi|6319780|ref|NC_001135.-( 315339 bp) 8 11 0 0 0 4 0 0 0 0 0 0
gi|6319952|ref|NC_001136.-( 1531929 bp) 22 18 0 0 1 2 0 1 0 1 0 0
gi|6320755|ref|NC_001137.-( 576870 bp) 10 4 0 0 0 0 0 1 0 0 0 0
gi|6321039|ref|NC_001138.-( 270148 bp) 7 6 0 0 1 2 2 1 0 0 0 0
gi|6321173|ref|NC_001139.-( 1090936 bp) 17 15 1 0 1 0 0 0 0 0 0 0
gi|6862570|ref|NC_001140.-( 562639 bp) 6 7 1 0 0 0 0 3 0 0 0 0
gi|6322016|ref|NC_001141.-( 439885 bp) 5 5 0 0 0 1 0 0 0 1 0 0
gi|6322236|ref|NC_001142.-( 745440 bp) 11 10 0 0 3 1 0 1 0 1 0 0
gi|6322623|ref|NC_001143.-( 666445 bp) 12 10 0 0 0 0 0 0 0 0 0 0
gi|6322960|ref|NC_001144.-( 1078172 bp) 16 10 1 1 1 6 1 1 1 0 0 0
gi|6323501|ref|NC_001145.-( 924430 bp) 10 10 1 0 0 1 1 0 0 0 0 0
gi|6323989|ref|NC_001146.-( 784328 bp) 14 8 0 0 0 1 0 2 0 1 0 0
gi|6324406|ref|NC_001147.-( 1091283 bp) 14 6 0 0 1 2 3 0 0 0 0 0
gi|6324971|ref|NC_001148.-( 948061 bp) 9 12 0 0 0 1 1 2 0 1 0 0
--------------------------------------------------------------------------------------------------------
Total ( 12069248 bp) 181 136 5 2 8 24 8 13 1 5 0 0
--------------------------------------------------------------------------------------------------------
-------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
181 AT + 136 TA = 317
5 AG + 2 GA + 5 CT + 1 TC = 13
13 GT + 8 TG + 24 CA + 8 AC = 53
0 GC + 0 CG = 0
-------------------------------------------------------------------------------
-------------------------------------------------------------------------------
Frequency distribution of di-nucleotides repeated for 20 times or more
--repeats longer than 40 bp
12 AT + 10 TA = 22
0 AG + 1 GA + 0 CT + 0 TC = 1
1 GT + 1 TG + 0 CA + 4 AC = 6
0 GC + 0 CG = 0
-------------------------------------------------------------------------------
Total repeats >=40 bp = 29
-------------------------------------------------------------------------------
© Division of Biochemical Sciences, National Chemical Laboratory, Pune 411008, INDIA