Tri-Nucleotide Repeats in Human Chromosome-21 Sequences
Tri-Nucleotide Repeats in Human Chromosome-21 Sequences
Genomic sequence
gi|7938973|ref|NT_001715.6|NT_001715| Homo sapiens 21p sequence.
Position Repeat Coverage Repeat
88585 ATA * 8 22/24 ATA ACA ATA ATA ATA ATA ATA GTA
136448 TTG * 14 38/42 TTG TTG TTG TTG TTG CTG TTG TTG CTG TTG TTG TTG CTG TTT
178845 CAC * 25 69/75 CAC CAC CAC TAC CAC CAC CAC CAC CAC CAC CAC CAT CAC CAC TAC CAC TAC CAC CAC CAC CAC CAC CAT CAA CAC
200353 TTG * 11 31/33 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTT TTT
217154 CTC * 8 22/24 CTC CTC CCG CTC CTC CTC CTC CTC
217186 CTT * 11 30/33 CTT GTC CTT CTT CTT CTT CTT CTT CTT CCT CTT
217311 TCC * 15 41/45 TCC TCC TCC TCC TCC TTC TCC TCC TCC TCC TCC TCC TCT TCT TCT
217356 TCT * 21 57/63 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT CCT TCT CCT TCT CCT TCT CCT CCT TCT CCT TCT
228834 TCT * 7 19/21 TCT TCT TCT TCT TCT TTT TTT
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Total sequence length......................... 281116
Minimum Tri-Nucleotide repeat units........... 7
Total number of repeats detected.............. 9
Maximum mismatch allowed...................... 10%
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Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 2 0 1 1 0 0 0 0 0 0 0 0 0
TCT 2 1 0 0 0 1 0 0 0 0 0 0 0
TCC 1 0 0 1 0 0 0 0 0 0 0 0 0
CAC 1 0 0 0 0 0 0 1 0 0 0 0 0
CTT 1 0 1 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
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Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 2 TCT = 3
0 AAC + 0 ACA + 0 CAA + 0 GTT + 2 TTG + 0 TGT = 2
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 1 TCC = 2
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 0
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
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Genomic sequence
gi|8134249|ref|NT_002836.4|NT_002836| Homo sapiens 21q sequence.
Position Repeat Coverage Repeat
283580 ATT * 7 19/21 ATT ATT GTT ATT ACT ATT ATT
299361 GTT * 7 19/21 GTT GCT GTT GTT GTT GCT GTT
334006 TTG * 9 25/27 TTG TTT TTG TTG TTG TTG TTA TTG TTG
427022 TTA * 7 20/21 TTA TTA TTA TTA TTA TTA TTT
478568 AAC * 8 22/24 AAC AAC AAC AAC AAC AAC AAA AAA
492389 ATA * 11 31/33 ATA ATA ATA ATA ATA ATA ATA ATA ATG ATA ACA
519315 AAT * 8 22/24 AAT AAT AAT AAT AAT AAT AAG AAG
587512 TTG * 10 27/30 TTG TTG TTG TTG TTG TTG TTG TTG TCG TCC
593234 ATT * 8 22/24 ATT TTT ATT AGT ATT ATT ATT ATT
703156 TAT * 7 19/21 TAT TAT TAT CTT TAT TAT TAT
812753 GAG * 7 19/21 GAG GAG GAG GAG GAG GAC GCG
838994 AAT * 7 19/21 AAT AAT AAT AAT AAT AAA AAG
844589 TAT * 7 19/21 TAT TAT TTT TAT TAT TTT TAT
845740 ATT * 8 22/24 ATT ATT ATT ATT ATT ATT TTT TTT
992533 ATA * 8 22/24 ATA ATA GTA ATA ATA ATA ATA AAA
1016892 AGG * 7 19/21 AGG AGC AGG AGC AGG AGG AGG
1040511 AAC * 8 22/24 AAC AAT AGC AAC AAC AAC AAC AAC
1106224 ATA * 9 25/27 ATA GTA ATA ATA ATA ATA ATA ATA AAA
1118060 TTA * 7 19/21 TTA TTA TTA TTA TTA GTA GTA
1118081 GTA * 9 25/27 GTA GTA GTA GTA GTA GTA GTA GTA TTT
1134454 ATC * 8 22/24 ATC ACC ATC ACC ATC ATC ATC ATC
1134499 CAT * 7 19/21 CAT CAT CAT CAA CAT CAC CAT
1134562 CAT * 8 22/24 CAT CAT CAT CAC CAT CAC CAT CAT
1134782 CAC * 7 19/21 CAC CAC CAT CAC CAC CAT CAC
1169563 ACA * 7 20/21 ACA ACA ACA ACA ACA ACA AAA
1371520 TCC * 7 20/21 TCC TCC TCC TTC TCC TCC TCC
1372305 TGT * 10 27/30 TGT TGT TGT TGT TAT TGT TGT CGT TGT TTT
1398557 ATT * 7 19/21 ATT ATT ATT ATT ATT ATT TTA
1476998 TTA * 10 27/30 TTA TTA TTA TTA TTA TTG TTA TTA TTT TGA
1570997 AAC * 8 23/24 AAC AAC AAC AAC AAC AAC AAC AAA
1588228 TAA * 7 19/21 TAA TAA TAT TAA TAA TAA TGA
1595239 AAC * 11 31/33 AAC AAA AAC AAA AAC AAC AAC AAC AAC AAC AAC
1672405 TTA * 8 22/24 TTA TTA TTA TTA TTA TTA TTA TAC
1701567 CTC * 7 19/21 CTC CTC ATC CTC CTC TTC CTC
1795542 TGG * 9 25/27 TGG TGA TGG TGG TGG TGG TAG TGG TGG
1831747 AAT * 18 50/54 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAA TTA
1874197 AAC * 8 22/24 AAC AAC AAC AAC AAA AAC AAC AAA
2053814 ATT * 7 19/21 ATT ACT ATT ATC ATT ATT ATT
2101550 CGC * 8 22/24 CGC CGC CGC CTC CTC CGC CGC CGC
2136915 CTA * 11 32/33 CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CAA
2142697 ATT * 7 19/21 ATT TTT ATT TTT ATT ATT ATT
2154574 AAT * 7 19/21 AAT AAT AAT AAT AAT AAT ATA
2217161 TTA * 7 19/21 TTA CTA TGA TTA TTA TTA TTA
2256844 GTG * 7 19/21 GTG TGG GTG GTG GTG GTG GTG
2265525 TAT * 9 25/27 TAT TAT TAT TAC TAT TAT TAT TAT TTT
2306544 TTC * 7 19/21 TTC TTC TTC TTC TCC TCC TTC
2306565 TCC * 8 22/24 TCC TCC TCC TCC TCC TTC TTC TCC
2308640 TTA * 16 44/48 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTT GAG
2469677 AAC * 7 19/21 AAC AAC AGC AAC AGC AAC AAC
2485023 TTG * 7 19/21 TTG TTA TTT TTG TTG TTG TTG
2542540 TTG * 7 19/21 TTG TTG TTG CTG TTG TTG TTT
2725170 ACA * 7 20/21 ACA ACA ACA ACA ACA ACA AAA
2766985 CGC * 11 30/33 CGC CAC CGC CGC CGC CGC CGC CGC CGC CGC GGG
2780953 TTG * 7 19/21 TTG TTG TTG TTG TTA TTT TTG
2781216 TTG * 7 19/21 TTG TTG TTG TTG TTG TTT TGG
2919477 TTG * 7 19/21 TTG TTG TTG TTG TTG ACG TTG
3006573 ATC * 8 22/24 ATC ATC ATC ATC ATC ATC ATC CAC
3197411 CTT * 28 76/84 CTT CTT CTT CTT CCT CCT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT TTC TTC TTT CTT CTT CTT CCT
3197501 CTC * 10 27/30 CTC CTC CTC CTC CTC TTC CTC TTC CTC TTC
3197558 TCC * 10 27/30 TCC TCC TCC TCC TCC TCC TTC TTC TCC TTC
3220028 GTT * 7 19/21 GTT TTT GTT TTT GTT GTT GTT
3221529 TAT * 10 27/30 TAT TAT TAT TAT TAT TAT TAT TAT TTT TGC
3320411 CAA * 7 19/21 CAA TAA CAT CAA CAA CAA CAA
3356357 TTC * 8 22/24 TTC TTC TTC TTC TTC TTC CTC CTC
3363934 ATC * 7 19/21 ATC ATC ATA ATC ACC ATC ATC
3397055 TTG * 7 19/21 TTG TTG TTG TTG TTG TCG TTT
3428045 AAC * 7 20/21 AAC AAC AAC AAC AAA AAC AAC
3429830 ATA * 7 19/21 ATA TTA ATA ATA ATA ATA AAA
3430017 TTA * 11 30/33 TTA TTA TTA TTA TTA TTA TTA TTA TTA TAC TTT
3438068 AAC * 7 19/21 AAC AAC AAC AAC AAC AAA AAA
3528464 AAC * 8 22/24 AAC AAC AAC AAC AAC AAC AAA AGC
3583419 GTA * 7 19/21 GTA GTA GTA GTA GTA ATT GTA
3703643 ATT * 7 20/21 ATT ATT ACT ATT ATT ATT ATT
3733973 ATA * 8 22/24 ATA ACA ATA ACA ATA ATA ATA ATA
3767081 TTA * 13 36/39 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TAC TTT
3859990 CTT * 14 38/42 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTC CTC CTC CTC
3860032 CTC * 11 30/33 CTC CTC CTT CTC CTT CTC CTC CTC CTC CTC CTT
4059495 AAT * 17 48/51 AAT AAT AAT AAT AAT AAT AAT AAT AAT GAT AAT AAT AAT AAT AAT AAT GAG
4077190 TTA * 7 20/21 TTA TTA TTA TTA TTA TTT TTA
4110129 GAA * 8 22/24 GAA GAA GAA GAA GAA GAA GAT GAG
4110165 GAG * 8 22/24 GAG GAG GCA GAG GAG GAG GAG GAG
4117035 AAC * 8 22/24 AAC AAT AAC AAC AAC AAC AAA AAC
4124350 AAG * 7 19/21 AAG AAG AGG AAG AAG AAA AAG
4124371 GAG * 7 19/21 GAG GAG GAG GAG GGG AAG GAG
4124431 AGG * 8 22/24 AGG AGG AGG AGG AGG AGG AAG AAG
4137102 AAT * 10 28/30 AAT AAT AAT AAT AAT AAT AAT AAT AAT TCT
4200174 AAG * 7 19/21 AAG AAG AAG AAG AAG AAA TAG
4297928 TTG * 8 22/24 TTG TTG TTG TGG TTG TTG TTG CTG
4400467 AAT * 7 19/21 AAT AAT AAT AAT AAT AAT TTT
4409548 AAG * 9 25/27 AAG AAG AAG AAG AAG AAG AAG AAG CTG
4409692 TAA * 7 19/21 TAA TAA TAA TAA CAA CAA TAA
4482604 TTG * 10 27/30 TTG TTG TTG TTG TTG TTG TTG TTG TTT TGA
4508007 TTG * 10 29/30 TTG TTG TTG TTG TTG TTG TTG TTG TTT TTG
4517421 ATT * 8 23/24 ATT ATT ATT ATT ATT ATT ATT CTT
4523676 CAA * 7 19/21 CAA CAA CAG CAA CAA CAA AAA
4531364 ACA * 8 22/24 ACA ACA ACA ATA GCA ACA ACA ACA
4537179 ATT * 7 19/21 ATT ATT ATT ATT TTT ATT TTT
4547009 TCC * 8 22/24 TCC TCT TCC TCC TCC TCC TCC TTC
4547135 TCC * 7 19/21 TCC TCC TCC TCC TCC TCC TTT
4558041 TTA * 8 22/24 TTA TTA TTA TTA TTA TTA TTT TGA
4575063 GAT * 7 19/21 GAT GAT GAT GGA GAT GAT GAT
4642811 ATA * 7 19/21 ATA ATA ATA TTA ACA ATA ATA
4654023 TTG * 8 23/24 TTG TTG TTG TTG TTG TTG TTG TTT
4749028 CCT * 7 19/21 CCT TCT CCT CCT CCT CTT CCT
4864254 AAT * 7 21/21 AAT AAT AAT AAT AAT AAT AAT
4944827 TTA * 8 22/24 TTA TTT TTA TTT TTA TTA TTA TTA
4999817 AAT * 8 23/24 AAT AAT AAT AAT AAT AAT AAT AAC
5002185 TCC * 11 30/33 TCC TCC TCC TCC TCC TCT TCC TCT TCC TCC TTC
5165089 AAG * 7 20/21 AAG AAG AAG AAG AAG AAG AAC
5182712 TTG * 8 22/24 TTG TTG TTG TTG TTG TTG TTT TTT
5197219 TCC * 7 20/21 TCC TTC TCC TCC TCC TCC TCC
5243615 ATT * 12 34/36 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT TTA
5297572 AAC * 11 31/33 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAA AAA
5364803 CAA * 7 19/21 CAA CAA CAA CAG CAA CAG CAA
5449475 CTG * 8 24/24 CTG CTG CTG CTG CTG CTG CTG CTG
5478413 ATT * 17 48/51 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT TTG AGT
5504153 ATA * 9 25/27 ATA ATA ATA ATA ATA ATA ATA ATA AAC
5507957 AAC * 7 19/21 AAC AAC AAC AAC AAA AAC AAA
5549601 AAC * 13 36/39 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAA AAA AAA
5555919 AAC * 10 27/30 AAC AAC AAC AAC AAC AAC AAC AAA GAC AAA
5586681 TTG * 10 27/30 TTG TTG TTG TTG TTG TTT TTG TTG TTG CTC
5594664 TTG * 7 19/21 TTG TTG TTG TTA TTG TTC TTG
5609022 AGG * 7 19/21 AGG AGG AGG AGG AGA AGG AGA
5635595 TTA * 8 22/24 TTA TTA TTA TTA TTA TTA TTA TAC
5641025 TAT * 8 22/24 TAT TAT TAC TAT TAT TAT TAT TAC
5706881 TTA * 19 52/57 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTG TTA TTT CTC ATA
5759736 TTA * 9 25/27 TTA TTA TTA TCA ATA TTA TTA TTA TTA
5783638 ATC * 7 19/21 ATC ATC ACC ATC ATC ATC ATT
5826600 ATA * 7 19/21 ATA ATA ATA ATA ATA AAA GTA
5843529 TAA * 7 20/21 TAA AAA TAA TAA TAA TAA TAA
6031597 AGG * 7 19/21 AGG GGG AGG AGG AGG AGG AAG
6282972 TTG * 7 19/21 TTG TTG TTG TTG TTG TTG TGC
6301703 ATC * 7 19/21 ATC ATC ATC ATC ATC ATT ATT
6326507 TTC * 8 22/24 TTC TTC TTC TTC TTC TTC CTG TTC
6333124 ACA * 14 38/42 ACA ACA ACA ACA ACA ACA ACA ACA ACA ACG ACA ACA AAG AAA
6364477 TAT * 10 29/30 TAT TAT TAT TAT TAT TAT TAT TAT TAT TCT
6497544 TAT * 7 19/21 TAT TAA TAT TAT TAT TAT TGT
6512837 TAT * 7 19/21 TAT TAT TAT TAT CAT CAT TAT
6601094 CAT * 7 19/21 CAT CAT AAT AAT CAT CAT CAT
6640268 CAA * 7 20/21 CAA CAA CAA CAA CAA CAA AAA
6710254 TTA * 11 30/33 TTA TTA TTA TTA TTA TTA TTA TTA TTT TTT TGA
6722392 CCT * 7 19/21 CCT CCT CCT CCT CCT TGT CCT
6760809 ATA * 10 27/30 ATA GTA ATA ATA ATA ATA ATA ATA ATA CAA
6774573 ATC * 7 19/21 ATC ATC ATC ATC ATC ACC ATT
6795667 TAT * 7 19/21 TAT TGT TAT TTT TAT TAT TAT
6863088 AAC * 7 19/21 AAC AAC AAC AAC AAC AAA AAA
6922113 ATT * 7 20/21 ATT ATT ATT ATT ACT ATT ATT
7049364 ATT * 8 23/24 ATT ATT ATT ATT ATT ATC ATT ATT
7049551 ATA * 8 22/24 ATA ATA ATA ATA ATA ATA ATG AAA
7085218 ACA * 10 27/30 ACA ACA ACA ACA ACA ACA ACA AAA ACT AGA
7092191 AAC * 8 22/24 AAC AAC AAC AAC AAC AAG AAC AAA
7166197 ATA * 14 40/42 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AAA ACA
7179941 TTA * 15 41/45 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA CTA TTA TTG AGA
7203831 TAT * 7 19/21 TAT TAT TAT AAT TGT TAT TAT
7299942 TAA * 17 47/51 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TGT ACA
7342796 TTA * 7 19/21 TTA TTA TTA TTA TTA TTA TAC
7399382 CAC * 7 19/21 CAC CAC CAC CAC CAA CAC CAA
7514057 TTA * 7 19/21 TTA TTA TTA TTA TTA TTA TAT
7526636 GTT * 7 19/21 GTT GCT GTT GTT GTT GTT ATT
7598989 AAC * 7 19/21 AAC AAT AAC AAC AAC TAC AAC
7695460 AAT * 11 30/33 AAT AAT AAT AAT AAT AAT AAT GAT AAT AAT TAA
7738672 CAC * 11 30/33 CAC CAC CAC CAC CAC CAC CAC CAC CGA AAC CAC
7770239 AAT * 9 25/27 AAT AAT AAT AAT AAT AAT AAT AAT TTT
7803444 TTG * 10 28/30 TTG TTG TTG TAG TTG TTG TTG TTG TTG ATG
7853249 TGT * 12 33/36 TGT TTT TGT TGT TGT TGT TGT TGT TTT TGT TTT TGT
7870406 AAC * 15 42/45 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAA CTC
7910007 TTA * 13 37/39 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA AGA
7972049 TGT * 10 28/30 TGT TTT TGT TGT TGT TAT TGT TGT TGT TGT
7975489 TAA * 7 20/21 TAA TAA TAA TAA TGA TAA TAA
8004251 AAT * 10 27/30 AAT AAT AAA ACT AAT AAT AAT AAT AAT AAA
8007542 TTG * 8 22/24 TTG TTA TTG TTG TTG TTG TTG TTT
8027966 AAT * 7 20/21 AAT AAT AAT AAT AAT AAT AAA
8109805 TTG * 7 19/21 TTG TTG TTG TTG TTC TTG TTT
8139433 CAA * 9 26/27 CAA CAA CAA CAA CAA CAA CAA CAA AAA
8208353 AAT * 7 19/21 AAT AAT AAT AAT GAT GAT AAT
8255362 AAT * 11 31/33 AAT AAT AAT AAT AAT AAC AAT AAA AAT AAT AAT
8264803 TTG * 7 20/21 TTG TTG TTG TTG TTG TTG TTA
8302320 TGG * 7 20/21 TGG TGG TGG TGG TGG TGG TGT
8305654 TTA * 7 20/21 TTA TTA TTA TTA TTA TTA TTT
8341230 TAA * 7 19/21 TAA TAA TAG AAA TAA TAA TAA
8387233 GTT * 10 27/30 GTT GTC GTT GTT GTT GTT ATT GTT GTT TTT
8488154 TTG * 11 30/33 TTG TTA TTG TTG TTG TTG TTG CTG TTG TTG TTA
8498061 TGG * 8 22/24 TGG TGG TGG TGG TGG TGG TGG TTT
8653049 ATC * 7 19/21 ATC ATC ATC ATC ATC ATC AGT
8674671 TCC * 7 19/21 TCC CCC TTC TCC TCC TCC TCC
8813928 ACA * 15 42/45 ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA AAA GAA
8821372 ATT * 11 30/33 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT TGA
8840045 TGT * 7 19/21 TGT TGT TGT TGT TGT TGT TTG
8863851 TAG * 8 22/24 TAG TAG TGG TAG TAG TAG TAA TAG
8890217 GGT * 11 31/33 GGT GGT GGT GGT GGT GGT GGT GGT GGT TGT GGG
8906126 AAC * 8 22/24 AAC AAC AAC AAC AAC GAC AAA AAC
8978945 AAT * 12 33/36 AAT AAT AAT AAT AAT GAT AAT AAT AAT AAT AAT CAG
8984806 TCC * 7 19/21 TCC CCC TCC TCC TCC TCC TTC
8984835 CTC * 7 19/21 CTC CTC CTC CTC CTC CTT CTT
8984865 TTC * 8 22/24 TTC TTC TGC TTC TTC CTC TTC TTC
8984890 TCT * 47 128/141 TCT TCT TCT TTT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCC TCT TCC TCC TCT TCT TCC TCT TCT TCT CCT TCT TCT TCT TGG TAT TTG TAA
9028140 TTG * 11 30/33 TTG TTG TTG CTG TTT TTG TTG TTG TTG TTT TTG
9206754 ATC * 7 19/21 ATC ATC ATC ATC ATC ATG ACC
9207036 GCT * 8 22/24 GCT GCT GCT GCT GTT GCT GCT TCT
9258215 GAG * 8 22/24 GAG GAG GAG GAG GAG GAA GAA GAG
9329875 CAA * 8 22/24 CAA CAG CAA CAA CAA TAA CAA CAA
9405213 AGG * 7 19/21 AGG AAG AGG AGG AGG AGA AGG
9457698 ATT * 7 20/21 ATT ATT ATT GTT ATT ATT ATT
9618552 CAA * 7 20/21 CAA AAA CAA CAA CAA CAA CAA
9667260 AAC * 8 22/24 AAC AAC AAA AGC AAC AAC AAC AAC
9671622 ATT * 7 19/21 ATT ATT ATT ATT ATT TTT CTT
9671771 TTA * 12 34/36 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTG GTA
9809547 TGT * 8 22/24 TGT TGC TGT TGT TGT TGT TGT TGA
9844516 ATC * 10 27/30 ATC AAC ATC ATC ATC ATC ATA ATC ATC AAC
9844648 ATT * 10 27/30 ATT TTT ATT ATT ATT ATT ATT ATT ATA CTT
9864566 AAT * 7 19/21 AAT AAC AAT GAT AAT AAT AAT
9946256 CAA * 8 22/24 CAA CAA CAA CAA CAA CAA CAA AAC
9973163 ATC * 8 22/24 ATC ATC ATC ATT ATC ATC ATC ACC
10002523 TTG * 7 20/21 TTG TTG TTG TTG TTG TTG TTT
10093674 ATT * 7 19/21 ATT ATT ATT ATT ATT AAT ATA
10096719 TTA * 7 19/21 TTA TTA TTA TTA TTA TTA TAC
10289187 TAT * 7 19/21 TAT TAT TTT TAT TAT TAC TAT
10289303 TAT * 8 22/24 TAT TAT TAT TAT TAT TAT TAC CAT
10374224 AAT * 15 41/45 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT ACA GAA
10454293 ATG * 10 28/30 ATG AGG ATG ATG ATG ATA ATG ATG ATG ATG
10471630 AAT * 18 49/54 AAT GAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT TCT GGT
10506542 GAA * 14 38/42 GAA GAA GAA GAT GAA GAA GAA GAA GAA GAG GAA GAA GAG GAG
10506584 GAG * 14 38/42 GAG GAG GAG GGG GAG GAG CAG GAG GAG GAG GAG GAA GAG GAA
10506641 GAA * 11 30/33 GAA GAA GAA AAA GAA GAA GAA GGA GAA GAC GAA
10506694 AAG * 7 19/21 AAG AAG GAG AAG AAG AAG AGG
10506717 GAA * 17 48/51 GAA GAA GAA GAA GAA AAA GAG GAA GAA GAA GAA GAA GGA GAA GAA GAA GAA
10525087 TTG * 8 22/24 TTG TTG TTG TTG TTT TTG TTG TTT
10561554 AAT * 8 22/24 AAT AAT AAT AAT AAT AAT AAC AAC
10751764 TAA * 7 19/21 TAA TAA TAG TAA TAA CAA TAA
10752519 CTG * 7 19/21 CTG CTG CTG CTC TTG CTG CTG
10780173 AAT * 7 19/21 AAT AAT AAT AAT AAT TAT TAT
10784116 AAT * 7 19/21 AAT AGT AAT AAT AAT AAT AAG
10836919 TGG * 7 20/21 TGG TGG TGG TGG TGG TGG GGG
10842801 ATT * 18 50/54 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT TTG AGA
10844726 TTG * 7 19/21 TTG TGG TTG TTG TTG TTG TTA
10895930 TTG * 10 27/30 TTG TTG TTG TTG TTG TTG TTG TTG TTT TGA
10947624 TTG * 14 38/42 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTT TTG CTT TTG TTT
10964766 GTT * 7 19/21 GTT GTT GTT GTT GTT GTT TTG
11044707 TAC * 8 22/24 TAC TAT TAC TAC TAC TAC TAC TAT
11092815 TTG * 9 25/27 TTG TTG TTG TTT TTG TTG TTG TTG TTC
11203138 AAT * 7 19/21 AAT AAA AAT AAT AAT AAT AAA
11235383 TAT * 7 20/21 TAT TAT TTT TAT TAT TAT TAT
11237790 ATA * 11 30/33 ATA ATA ATA ATA ATA ATA ATA ATA ATC ATC ATC
11240054 ATA * 7 19/21 ATA ATA AAA ATA ATA AGA ATA
11260231 GTT * 7 19/21 GTT GTT GTT GTT GTT GCT GCT
11303937 AAC * 7 19/21 AAC AAC AAC AAC AAC AAA AAT
11329708 TTA * 8 23/24 TTA TTA TTA TTA TTA TTA TTA TTG
11363792 CAA * 7 19/21 CAA CAA CAA CAA CAG CAA AAA
11387750 CAA * 7 19/21 CAA CAA CAA CAA CAA TAA AAA
11401854 AAT * 7 19/21 AAT TTT AAT AAT AAT AAT AAT
11569425 TTA * 9 25/27 TTA TTA TTA TTA TTA TTA TTA TTT TGA
11725903 ATA * 7 19/21 ATA ATA ATA ATA ATA ATA TAA
11759026 AAC * 7 19/21 AAC AAC AAC AAC AAC AAA AAA
11768296 ATA * 11 30/33 ATA ATA ATA ATA ATA ATA ATA ATA AAA ATA AAT
11897215 AAT * 7 19/21 AAT AAT AAT ATT AAT AAT GAT
11912022 CAA * 7 19/21 CAA CAA CAA CAG CAA CAA AAA
11935504 ATT * 7 19/21 ATT ATT ATT TTT ATT ATT ATC
11935525 ATC * 8 23/24 ATC ATC ATC ATC ATC ATC ATT ATC
11972397 TAA * 9 25/27 TAA TAA TAA TAA TAA TAA TAA CAA CAA
12057559 TTG * 8 22/24 TTG TTG TTG TTG TTG TTG TTT TTT
12101295 CAA * 7 19/21 CAA CAA CAA CAA CAA AAA CAC
12209633 ATG * 8 22/24 ATG ATG ATG ATG ATG ATG ATG AGA
12259434 ACA * 7 19/21 ACA ACA ACA ACA ACA ACA AAC
12280204 ATT * 7 19/21 ATT ATT ATC ATT ATT ATT AAT
12323633 CCT * 11 31/33 CCT CCT CCT CCT CCT CCC CCT CCT CCT CCC CCT
12323692 CCT * 8 22/24 CCT CCT CCT CCT CCT CCC ACT CCT
12323738 TCC * 7 19/21 TCC TCC TCC TCC TCC CCA TCC
12323782 CCT * 8 22/24 CCT CCT CCT CCT CCT CCT CTT CCC
12323829 TCC * 7 19/21 TCC CCC TCC TCC TCC TCC TTC
12466158 GCT * 8 22/24 GCT GCT GCT GCT GCT GCT GCA TCT
12490160 AAT * 7 19/21 AAT AAT AAT AAT AAT AAA ATT
12616360 TTA * 9 26/27 TTA TTA TTA TTA TTA TTA TTA TTA TTT
12659177 TTA * 10 27/30 TTA TTA TTA TTG TTA TTA TTA TTA TTA TAT
12773831 ACA * 9 25/27 ACA AAA ACA AAA ACA ACA ACA ACA ACA
12780622 AAT * 10 28/30 AAT AGT AAT AAT AGT AAT AAT AAT AAT AAT
12857182 TCT * 7 19/21 TCT TCT TCT TCT TCT TCT ATT
12862053 CAG * 7 19/21 CAG CAG CAG CAG CAG CAG CCA
12908319 ATT * 7 20/21 ATT ATT ATT ATT ATT ATT CTT
12971914 GTG * 8 22/24 GTG GTG GTG GTG GTG GTG GTG GCA
13103568 TTG * 7 19/21 TTG TTG TTG TTG TTG TTT TTC
13137174 TTG * 7 20/21 TTG TTG TTG TTG TTG TTG TTT
13376728 AAC * 9 26/27 AAC AAC AAC AAC AAC AAC AAC AAC AAA
13425788 AAC * 7 19/21 AAC AAC AAC AAC AAC AAA ACC
13549842 ACC * 11 31/33 ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC AAT
13685617 TTG * 7 20/21 TTG TTG TTG TTG TTG TTG TTT
13706311 AAC * 7 20/21 AAC AAC AAC AAC AAC AAC AAA
13823560 AAT * 7 19/21 AAT AAC AAT AAT AAT AAT AAA
13885287 AAT * 8 22/24 AAT TTT AAT AAT AAT AAT AAT AAT
13951504 TAA * 7 21/21 TAA TAA TAA TAA TAA TAA TAA
13969111 GAG * 7 19/21 GAG GAG GAG GAT AAG GAG GAG
14117453 CAA * 10 27/30 CAA AAA CAA CAA CAA CAA CAA CAA GAA CGA
14130031 CAA * 7 20/21 CAA CAA CAA CAA CAA CAA AAA
14148786 ATT * 8 22/24 ATT ATT ATT ATT ATT ATT TTT TTT
14204649 AAC * 7 20/21 AAC AAA AAC AAC AAC AAC AAC
14214959 GTT * 7 19/21 GTT TTT GTT GTT GTT GTT CTT
14223396 CAC * 7 19/21 CAC CAC CAT CAC CAC CCC CAC
14230182 TTA * 17 46/51 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TAT TAT TTC
14241924 ATT * 7 19/21 ATT ATT ATT ATT ATT GTC ATT
14262908 TGT * 7 20/21 TGT TGT TGT TGT TGT TGT TGA
14281235 TAA * 10 28/30 TAA AAA TAA TAA TAA AAA TAA TAA TAA TAA
14287156 AAT * 7 19/21 AAT AAT AAT AAT AAT CAT TAT
14298485 AGA * 7 19/21 AGA AGA AGA GGA AGA AGC AGA
14324373 AAC * 7 19/21 AAC AAC AAC AAT ACC AAC AAC
14324578 TAA * 7 19/21 TAA AAA TAA TAA TAA TGA TAA
14347948 TGA * 8 22/24 TGA TGA TGA TAA TGA TGA TGA TGT
14473206 AAT * 8 22/24 AAT AAT AAT AAT AAT AAT AAT ATC
14488974 ACA * 7 19/21 ACA GCA ACA ACA ACA ACA TCA
14553051 GTT * 7 19/21 GTT TTT GTT GTT GTT GTT GTG
14555772 TTG * 8 22/24 TTG TTG TTG ATG CTG TTG TTG TTG
14557078 TTG * 7 20/21 TTG TTG TTG TTG TTG TTG TTT
14614522 AAT * 7 19/21 AAT AAT AAT AAT AAT CAT AAA
14638488 TTG * 7 19/21 TTG TTG TTG TTG TTG TTT TTT
14647730 TAT * 9 25/27 TAT TAT TAT TAT TAT CAT TAT GAT TAT
14664540 TAA * 7 19/21 TAA AAA TAA TAA TAA TAA AAA
14680962 TTA * 7 20/21 TTA TTA TTA TTA TTA TTA TTT
14690073 TTC * 7 19/21 TTC TTC TTC TTC TTC TTT TTT
14776504 TTG * 7 20/21 TTG TTG TTG TTG TTG TTT TTG
14785197 TAT * 7 20/21 TAT TAT TAT TAT TAT TAT TTT
14893332 GAT * 10 27/30 GAT GAT GAT GAT GAT GAT GAT TAT TAT TAT
14905503 TTG * 8 22/24 TTG TTG TTG ATG TTG TTG TTG TTT
14917453 TGT * 7 19/21 TGT TGT TGT TGC TGT TGC TGT
14941197 CAA * 11 31/33 CAA CAA CAA CAA CAA CAA CAA CAG CAA AAA CAA
14958165 TTG * 9 25/27 TTG TTT TTG TTG TTG TTG TTA TTG TTG
15052135 ATG * 14 39/42 ATG ATA ATG ATG ATG ATG ATG ATG ACG ATG ATG ATG ATG ACG
15079191 ATT * 7 19/21 ATT ATT ATT ATT ATT ATT TTG
15086264 GTG * 10 27/30 GTG CTG GTG GTA GTG GTG GTG GTG GTG GGG
15144662 CAA * 7 19/21 CAA CAA AAA CAA AAA CAA CAA
15157379 AAC * 8 22/24 AAC AAC AAC AAC AAC AAC AAC ACT
15297864 TCC * 7 19/21 TCC TCC TCC TCC TCT TCC TCT
15505888 CAA * 8 22/24 CAA CAA CAA CAA CCA CAT CAA CAA
15636444 TTG * 10 27/30 TTG TTT TTG TTG TTG TTG TTG TTG CTG TTT
15774426 TTG * 12 33/36 TTG TTG TTG TTG TTG CTG CTG TTG TTG TTG TCG TTG
15875170 ATA * 7 20/21 ATA ATA ATA ATA ATA ATA GTA
15953580 TAA * 7 19/21 TAA TAA TAA TAA TAA TAA ATA
15967429 TTA * 7 19/21 TTA TTA CTA TTA TTA TTA TTG
16020823 TGT * 7 20/21 TGT TGT TGT TGT TGT TGT TTT
16060099 AAC * 9 25/27 AAC AAC AAC AAC AAC AAC AAC AAA AAA
16130073 TTA * 7 20/21 TTA TTA TTA TTA TTA TTT TTA
16209750 TAT * 7 19/21 TAT TAT TAT TAT TAT TAT TGC
16301528 TTG * 10 27/30 TTG TTT TTG TTG TTG TTG TTG TTT TTG TTT
16307914 ATA * 7 19/21 ATA ATA ATA ATA ATA AAA ATT
16379964 ACA * 10 27/30 ACA CAA ACA ACA ACA ACA ACA ACA ACA ATA
16414751 TTC * 8 22/24 TTC TCT TTC TTC TTC TTC TTC TTC
16420808 TTA * 7 19/21 TTA TTA TTA TTA GTG TTA TTA
16437442 AAT * 7 19/21 AAT AAT AAT AAT AAT ACA AAT
16454575 AAC * 7 19/21 AAC AAC AAA AAC AAA AAC AAC
16473980 TAA * 8 22/24 TAA TAG TAA TAA TAG TAA TAA TAA
16479082 TTC * 7 19/21 TTC TTC TTC TTC TTC TTT TTT
16589761 TGT * 8 22/24 TGT CTT TGT TGT TGT TGT TGT TGT
16608826 CAA * 7 20/21 CAA CAA CAA CAA CAA CAA AAA
16694468 ATT * 7 19/21 ATT ATT ATT ATT ATT TTC ATT
16721857 ATG * 7 19/21 ATG ATG ATG ATG GTG GTG ATG
16742373 TCC * 7 19/21 TCC TTC TCC TCC TCC TTC TCC
16762956 AAT * 9 25/27 AAT AAT AAT AAT AAT AAT AAT TAT TAT
16796913 TTA * 8 22/24 TTA TTA TTA TTA TTA TTA TTA AAA
16884931 ATA * 7 19/21 ATA ACA ATA ATA ATA ATA AAA
16905634 TTA * 7 19/21 TTA TTA TTG TTT TTA TTA TTA
16921086 AAC * 7 19/21 AAC AAC AAC AAC AAG AAC AAA
16932441 GCA * 7 21/21 GCA GCA GCA GCA GCA GCA GCA
16954580 TTC * 7 19/21 TTC TTC CTC TTC ATC TTC TTC
16994190 ATC * 8 23/24 ATC ATC ATC ATC ATC ATC ATC ATT
17006596 TTG * 7 20/21 TTG TTG TTG TTG TTG TTG TTA
17155193 GTT * 10 28/30 GTT GTT TTT GTT GTT GTT GTT GTT GTT TTT
17220071 AAC * 8 22/24 AAC AAA AAC AAC AAC AAC AAC AAA
17222809 ATA * 10 27/30 ATA ATA ATA ACA ATA ATA ATA ATA ACA AAA
17372695 AGA * 7 19/21 AGA AGA AGA AGA AGA GGA AAA
17383591 CAA * 7 19/21 CAA CAA CAA CAA CAA AAA AAA
17473911 TTG * 7 19/21 TTG TTG CTG TTG TTG TTG TTT
17529694 ATC * 8 22/24 ATC ATC ATC ATC ATC ACC ATC ATT
17549754 ACA * 10 28/30 ACA ACA ACA ACA ACA ACA ACA ACA ACA AGT
17591328 GAG * 8 22/24 GAG GAG GAG AAG GAG GAG GAG GGG
17619519 ATG * 8 22/24 ATG ATG ATG ATG ATG ACT ATG ATG
17661661 TTG * 7 19/21 TTG TTG TTG TTG TTG TTG CTA
17702615 ATT * 10 27/30 ATT ATT ATT ATT ATT ATT ATT ATT AAT TAT
17709416 TTG * 8 23/24 TTG TTG TTG TTG TTG TTG TTG TTT
17749275 ATG * 7 19/21 ATG ATG ATG ATA ATG ATG ATA
17769576 TGG * 12 33/36 TGG TGG TGG TGC TGG TGG TGA TGG TGG TGG TGT TGG
17790902 AAC * 7 19/21 AAC ATA AAC AAC AAC AAC AAC
17811586 CTT * 14 39/42 CTT TTT CTT CTT CTC CTT CTT CTT CTT CTC CTT CTT CTT CTT
17924234 TTA * 7 20/21 TTA TTA TTA TTA TTA TTA TCA
17967331 ATA * 7 19/21 ATA ACA AAA ATA ATA ATA ATA
18051628 GAG * 7 19/21 GAG AAG GAG GAG GAA GAG GAG
18118319 AAT * 9 25/27 AAT AAT AAT AAT AAT AAT AAT ACT AAA
18130762 CTT * 10 27/30 CTT CTT CTT CTT CTT CTT CTT TTT TTT TTT
18152138 TTG * 8 23/24 TTG TTG TTG TTG TTG TTG TTG TTT
18208653 AAT * 10 28/30 AAT AAT AAT AAT AAT AAT AAT AAT AAT CCT
18240340 AAC * 7 19/21 AAC AAC AAC AAC AAC AAA AAA
18286523 TTA * 17 47/51 TTA TTA TTA TTA TTG TTG TTA TTA TTA TTA TTA TTA TTA TTA TTA TTT TGA
18309293 ATA * 7 20/21 ATA ATA ATA ATA ATA ATA ATT
18311468 ATT * 13 37/39 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATA TTT
18351231 CAA * 7 19/21 CAA AAA AAA CAA CAA CAA CAA
18420891 AAT * 11 32/33 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAA
18424046 TTA * 14 38/42 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTT AGT
18434746 CCA * 7 19/21 CCA ACA CCA CCA CCA CCA ACA
18438390 GAG * 10 27/30 GAG GAG GAG GAG GAG GAG GAG AGG GAG GGG
18451501 ACC * 7 19/21 ACC ACA ACC ACC ACC ATC ACC
18519502 AAG * 7 19/21 AAG AAG AAG AAG AAG GAG GAG
18531353 AAT * 12 33/36 AAT AAT AAT AAT AAC AAT AAC AAT AAT AAT AAT AAC
18547782 ATT * 7 20/21 ATT ATT ATT ATT ATT ATT TTT
18551267 AGC * 8 22/24 AGC AGC AGC AGC AGC AGC AGA AGA
18562964 AAT * 7 19/21 AAT AAT AAT AAT AAT AAA AAA
18578332 AAG * 7 19/21 AAG AAG AAG AAG AAG ACA AAG
18586261 TTA * 9 25/27 TTA TTA TTA TTA ATA TTA TTA TTA TTT
18620914 GCT * 8 22/24 GCT GCT GCT GCT GCT GCT GCT GTG
18634582 GGA * 7 20/21 GGA GGA GGA GGG GGA GGA GGA
18681238 CGG * 9 25/27 CGG CGG CGG CGG CGG CCG CGG CCG CGG
18688480 AAC * 8 22/24 AAC AAC AAC AAC AAC AAC AAA AAT
18698941 AAG * 8 22/24 AAG AAG AAG AAG AAG AAG AAA AAA
18732919 CCA * 15 41/45 CCA CCA CCA CCA TCA CCA CCA CCA CCA CCA CCA TCA CCA TCA TCA
18732976 CCA * 18 49/54 CCA CCA CCA CCA TCA TCA CCA CCA CCA CCA CCA CCA TCA CCA TCA CCA CCA TCA
18733040 CAT * 7 19/21 CAT CAC CAT CAT CAT CAT AAT
18733085 CAC * 21 57/63 CAC CAC CAC CAC CAC CAC CAT CAC CAC CAT CAC CAT CAC CAC CAT CAC CGC CAC CAC CAT CAC
18733187 CAC * 22 60/66 CAC CAC CAC CAC CAC CAC CAT CAC CAC CAT CAC CAT CAC CAC CAT CAC CGC CAC CAC CAT CAC CAC
18733268 CAT * 7 19/21 CAT CAT CAC CAT CAT CAC CAT
18733292 CAC * 10 27/30 CAC CAT CAC CAC CAC CAC CAC CAT CAC CAT
18733340 CAC * 15 41/45 CAC CAC CAC CAC CAC CAC CAT CAC CGC CAC CAC CAT CAC CAC CAT
18733421 CAA * 11 31/33 CAA CAA CAA CAA CAA TAA CAA CAA CAA CAA CCA
18733515 ACC * 14 38/42 ACC ACC ACC ACC ACC ACC ATC ACC ACC ACC ACC ATC AAC AAC
18733557 CAC * 8 22/24 CAC CAC TAC CAT CAC CAC CAC CAC
18733597 CAC * 8 23/24 CAC CAC CAC CAC CAC CAC CAC CAA
18733621 CCA * 15 41/45 CCA CCA CCA CCA CCA CCA CCA CCA CCA CAA CAA ACA CCA CCA ACA
18733690 ACC *117 317/351 ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ATC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACA ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC AAC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACA ACA ACA ACA CCA CAC NNN NNN NNN NAT CAC CAC CAC CAT CAC
18734041 CAC * 24 65/72 CAC CAC CAT CAC CAC CAC CAT CAC CAC CAC CAT CAC CAC CAC CAC CAT CAC CAC CAT CAC CAC CAC CGC CAT
18734119 CAC * 30 81/90 CAC CAC CAC CAC CAC CAC CAT CAC CAC CAT CAC CAC CAC CAC CAC CAC CAC CAT CAC CAC CAC CAT CAT CAC CAT CAC CAC CAC CAC TGT
18734212 CAC * 31 84/93 CAC CAC CAC CAC CAT CAC CAC CAT CAC CAC CAC CAT CAC CAT CAC CAC CAC CAC CAC CAC CAT CAC CAT CAC CAC CAC CAC CAT CAT CAT CAC
18734313 ACC * 8 22/24 ACC ATC ACC ACC ACC ACC ACC ATC
18734393 ACC * 15 42/45 ACC ACC ACC ACC ACC ACC ACC ACT ACC ACC ACC ACT ACC ACC ACT
18734830 CCA * 11 30/33 CCA CTA CCA CCA CCA CCA CCA CCA CCA TCA TCA
18753741 CTT * 7 19/21 CTT CTT CCT CTT CTT CTT TTT
18755289 ACA * 17 48/51 ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA AGT ACC ACA
18782596 CTT * 13 36/39 CTT CTT CTT CTT CTT CCT CTT CTT CTC CTC CTT CTT CTT
18830583 CAA * 9 25/27 CAA CAA CAA CAA CAA CAA CAA CAA AGA
18922528 TGA * 10 29/30 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGG
18966146 TTG * 8 23/24 TTG TTG TTG TTG TTG TTG TTG TTT
18978454 CTC * 8 22/24 CTC CTC CTC CTC CTG CTC CTC TTC
18997922 AGG * 7 19/21 AGG AGG AGG AAG AGG AGG AGA
19013548 GAG * 8 22/24 GAG GAG GAG GAG GAG GAA GGG GAG
19047258 TCA * 8 22/24 TCA TCA TCA TAA TCA TTA TCA TCA
19063184 AAT * 11 30/33 AAT AAT AAT AAT AAT AAT AAT AAC AAT AAT TTT
19106474 TTG * 7 19/21 TTG TTA TTG TTG TTG TTG TTT
19190824 TTG * 7 21/21 TTG TTG TTG TTG TTG TTG TTG
19201150 AGA * 17 46/51 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGG AGG AGG AGG AGG
19201201 AGG * 11 31/33 AGG AGG AGG AGG AGG AGG AGG AGG AGG AAG AGA
19201364 AGG * 7 19/21 AGG AAG AGG AGG AGG AGG AAG
19357434 AAG * 7 19/21 AAG AAA AAG AAG AAG AAG AAA
19424284 ATC * 11 30/33 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATT TTT
19425587 AAT * 7 20/21 AAT AAT AAT AAT AAT AAT AAG
19428442 AAC * 7 19/21 AAC AAC AAC AAC AAC AAC AGA
19676895 TCC * 7 19/21 TCC TCC GGC TCC TCC TCC TCC
19697224 AAC * 8 22/24 AAC AAC AAC AAC AAC AAA AAA AAC
19711106 TCA * 7 19/21 TCA TCG TCA TCT TCA TCA TCA
19792076 AAT * 8 22/24 AAT AAT AAT AAT AAT AAT AAT ATC
19800925 CAA * 11 30/33 CAA CAA CAA CAA CAA CAA CAA CAA AAA CAC AAA
19880554 AAC * 7 19/21 AAC AAC AAC AAC AAC AAC AGG
20019323 CCT * 18 49/54 CCT CCT CCT CCT CCT CCT CCA CCT CCT CCA CCT CCT CCA CTT CCT CCT CCT CCA
20019500 AGC * 7 19/21 AGC AGC AGC AGC AGC TGC GGC
20026462 GTG * 18 49/54 GTG GTG ATG GTG GTG ATG GTG GTG GTG GTG GTG GTG GTG GTC GTG GTG CTG GTT
20031378 TTA * 17 46/51 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTT TGA GAC
20066005 GTT * 7 19/21 GTT GTT GTT GTT CTT GCT GTT
20078242 TTA * 14 38/42 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTT TTG AGA
20141983 AAG * 8 22/24 AAG AAG AAG AAG GAG AAG GAG AAG
20142036 GAA * 9 25/27 GAA GAG GAA GAA GAA GAA GAA GAA GAC
20179287 CTC * 7 19/21 CTC CTC CTC CTC CTC CTG CCC
20254062 TGT * 7 19/21 TGT TTT TGT TGT TGT TGT TTT
20266595 AAC * 10 27/30 AAC ATC ATC AAC AAC AAC AAC AAC AAC AAA
20300722 TGG * 7 20/21 TGG TGG TGG TGG TGG TGG TTG
20325657 AAT * 11 31/33 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT TAA
20352545 CGC * 7 19/21 CGC CGC CGC CGC CGC GGC CCC
20433958 TTG * 10 27/30 TTG TTG TTG TTG TTG TTG TTG TTT TTG GTA
20437977 TTC * 7 19/21 TTC TAC ATC TTC TTC TTC TTC
20450295 TTG * 7 20/21 TTG GTG TTG TTG TTG TTG TTG
20479149 AAC * 7 19/21 AAC AAC AAC AAA AAC AAA AAC
20537383 GCC * 7 19/21 GCC GCC GCC GCT GCC ACC GCC
20578183 AAC * 8 23/24 AAC AAC AAC AAC AAC AAC AAC AAA
20627648 GTT * 7 20/21 GTT TTT GTT GTT GTT GTT GTT
20711618 ATT * 7 19/21 ATT ATT ATT ATT ATT ACT TTT
20782868 ATT * 9 25/27 ATT ATT ATT ATT ATT ATT ATT ATT CCT
20798193 AAC * 8 22/24 AAC AAA AAC AAG AAC AAC AAC AAC
20833162 TTG * 8 23/24 TTG TTG TTG TTG TTG TTG TTG TTT
21023102 CGC * 7 19/21 CGC CGG CCC CGC CGC CGC CGC
21061958 AAC * 7 19/21 AAC AAC AAC AAC AAC AAA AAA
21106317 TTG * 7 19/21 TTG TTG TTG TTG TTG TTT TTT
21122682 CAA * 15 43/45 CAA AAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAC
21142177 TTA * 17 47/51 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTT TTG TAG
21289205 AGG * 8 23/24 AGG AGG AGG AGG AGG AGG AGG CGG
21312348 TCT * 7 19/21 TCT TCC TCT TCC TCT TCT TCT
21354313 AAC * 8 22/24 AAC AAC AAC AAC AAC AAC AAA AAA
21355642 GTT * 7 19/21 GTT GTT GTT GTT GTT GTT TTG
21504537 AAT * 7 19/21 AAT AAT AAT AAT AAT AAA AAA
21505377 AAT * 11 31/33 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AGG
21543499 AAC * 8 22/24 AAC AAG AAC AAC AAC AAC AAC AAA
21563901 GCC * 7 19/21 GCC GCC TCC GCC GCC TCC GCC
21594832 TTA * 7 19/21 TTA TTA TTA TTA TTA TTT TAA
21642893 TGT * 11 30/33 TGT TGT TGT TGT TGT TGT TGT TGT TGT TTT CTT
21650401 ATG * 9 25/27 ATG ATG ATG ATG TTG ATG ATG ATA ATG
21673786 TTG * 8 22/24 TTG TTT TTG TTT TTG TTG TTG TTG
21736202 TTA * 7 19/21 TTA TTA TTA TTA TTA TTT TTG
21798860 ATT * 11 30/33 ATT ATT ATT ATT ATT ATT ACT ATT ATT ATT TTG
21798974 AAC * 7 19/21 AAC AAC AAC AAC AAA AAA AAC
21850465 AAT * 8 23/24 AAT AAT AAT AAT AAT AAT AAC AAT
21858799 CTC * 8 23/24 CTC CTC CTC CTC CTC CTG CTC CTC
21858872 TCC * 7 19/21 TCC GCC TCT TCC TCC TCC TCC
21862182 AAG * 8 22/24 AAG AAG AAG AAG GAG AAG GAG AAG
21886178 ATT * 8 22/24 ATT ATT ATT ATT ATT GTT ATT GTT
21887444 TCC * 7 19/21 TCC TCC TCC TCC TCC TCT TAC
21887466 CCT * 7 19/21 CCT CCT CCT TCT CCT CCT TCT
21887505 TCC * 7 19/21 TCC TTC TCC TCC TCT TCC TCC
21910304 AAT * 15 42/45 AAT AAT AAT AAT AAT AAT GAT AAT AAT AAT AAT AAT AAC AAT AAC
21915211 AAT * 7 19/21 AAT AAT AAT TAA AAT AAT AAT
21940485 GAT * 16 44/48 GAT TAC GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GGT GAT GAT GAC
21951054 TAT * 10 27/30 TAT TAT TAT TAT TAT TAT TAC TAT TTT TAC
21971842 AAT * 9 26/27 AAT AAT AAT AAT AAT AAT AAT AAT AAG
22029781 AAC * 11 31/33 AAC AAC AAC AAC AGC AAC AAC AAC AAC AAC AAA
22100367 TCA * 7 19/21 TCA TCT TCA TTA TCA TCA TCA
22107823 AAC * 7 19/21 AAC AAC AAC AAC AAA AAA AAC
22131729 ATT * 8 22/24 ATT ATT ATT ATT ATT ATT ATA CTT
22196307 TAA * 14 38/42 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA AAA GCT
22228754 AAC * 12 35/36 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAT
22262051 TTA * 7 19/21 TTA TTT TTA GTA TTA TTA TTA
22342136 TTC * 10 27/30 TTC TTC TTC TTC TTC TTC TTC TTT TTT TTT
22374109 TTG * 7 20/21 TTG TTG TTG TTG TTG TTG TTT
22416931 TCC * 10 27/30 TCC TCC TCC TCC TCC TCC TCC TCC TCT TTT
22490137 CAT * 8 22/24 CAT AAT TAT CAT CAT CAT CAT CAT
22510910 GAA * 7 19/21 GAA GAA GAG GAA GAA GAA GAG
22586936 TTG * 7 20/21 TTG TTG TTG TTG TTG TTG TTT
22623629 TTG * 11 31/33 TTG TTG TTG TTG TTA TTG TTG TTG TTG TTG TTT
22681135 TAG * 7 19/21 TAG AAG TAG TAG TAG TAA TAG
22701804 AAG * 8 22/24 AAG AAG AAA AAG AAG GAG AAG AAG
22712671 GTG * 11 30/33 GTG GTG GTG GTT GTG GTG GTG GTG GTG GTC GTT
22733955 GAG * 11 30/33 GAG GAG GAG GAG GAG GAG GAG GAG GAA GAA GAA
22895990 TTA * 7 19/21 TTA TTA TTA TTA TTA TCT TTA
23028396 AGC * 7 19/21 AGC AGC AGT GGC AGC AGC AGC
23079372 CCT * 8 23/24 CCT CCT CCT CTT CCT CCT CCT CCT
23079477 GCC * 7 20/21 GCC GCC GCC GCC GCC GCC TCC
23107008 ATT * 8 22/24 ATT ATT ATT ATT ATT ATT ATT TTG
23109181 AAT * 8 22/24 AAT AAT AAT AAT AAT AAT AAT ATG
23110561 TGT * 7 19/21 TGT TGT TGT TGT TGT TTT TGA
23124151 TTC * 7 19/21 TTC TTC TTC TTC TTC TTT TTT
23188634 TGC * 7 19/21 TGC TCC TGC TGC TGC TGC AGC
23190902 ATT * 14 39/42 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT GAA
23260068 TTG * 7 20/21 TTG TTG TTG TTG TTG TTT TTG
23269153 GCG * 7 19/21 GCG GCG GCG GGG GCT GCG GCG
23317828 TGA * 7 19/21 TGA TGA TGA TGA TGA AGA TGT
23322834 ATT * 7 20/21 ATT ATT ATT ATT ATT ATT TTT
23329843 TTC * 7 19/21 TTC TTT TTC TTC TTC TTC TTT
23331445 TTA * 10 28/30 TTA TTA TTA TTA TTA TTA TTA TTA TTT TTG
23418670 TGT * 8 22/24 TGT TGC TGT TTT TGT TGT TGT TGT
23418769 AAC * 7 19/21 AAC AAA AAC AAA AAC AAC AAC
23468440 AAC * 9 25/27 AAC AAC AAC AAC AAC AAC AAC AAA ACC
23533153 CAA * 8 22/24 CAA AAA CAA CAA CAA CAA CAA AAA
23542877 GTT * 7 19/21 GTT GTT TTT TTT GTT GTT GTT
23546301 GAG * 7 19/21 GAG GAG GAG GAA GAA GAG GAG
23610251 AAG * 7 19/21 AAG AAG AAG AAG AAA AAG AAA
23626913 AAG * 7 20/21 AAG AAG AAG AAG AAG AAG AAA
23647752 CGC * 7 19/21 CGC CGC CCC CGC CCC CGC CGC
23795242 TGT * 7 19/21 TGT TGT TGA TAT TGT TGT TGT
23907623 AAT * 7 19/21 AAT AAT AAT AAT GAT AAT ACT
23925316 AAT * 7 20/21 AAT AAC AAT AAT AAT AAT AAT
23947276 CCT * 11 30/33 CCT CCT TCT CCT CCT TCT CCT CCT CCT CTT CCT
23948604 CTT * 8 22/24 CTT CTT CTT CTT CTT CTT TTT TTT
23960944 TTA * 17 47/51 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTT TTG AGA
24001046 AAT * 7 20/21 AAT AAT AAT AAT AAT AAT AAA
24009195 GCA * 7 19/21 GCA GCA GCA GCA GCT GAA GCA
24022026 CGG * 10 27/30 CGG AGG TGG CGG CGG CGG CGG CGG CGG CTG
24038251 TTA * 7 19/21 TTA TTA TTA TTA TTA TTT TTG
24063973 ATA * 12 33/36 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AAG AAA
24159681 AGA * 8 22/24 AGA AGA AGA AGG AGA AGG AGA AGA
24164854 ATT * 8 22/24 ATT ATT GTC ATT ATT ATT ATT ATT
24222347 GGA * 7 19/21 GGA GAA GGA GGA GGA GGG GGA
24268117 AAT * 10 27/30 AAT AAT AAT AAT AGT AAT AAT AAT AAT AGC
24272990 TTA * 13 36/39 TTA TTA TTA TTA CTA TTA TTA TTA TTA TTA TTA TTT TGA
24315738 CTG * 7 19/21 CTG CTG CTG TCG CTG CTG CTG
24315829 CTG * 10 27/30 CTG CTG CTG CTG TTC CTG CTG CTG CTG TTG
24316771 TCC * 14 38/42 TCC TCC TCC TCC TCC TCC TCT TCC TCC TCA TCC TCT TCC CCC
24330621 CAA * 7 19/21 CAA AAA CAA AAA CAA CAA CAA
24460885 CCA * 13 36/39 CCA TCA CCA TCA CCA CCA CCA CCA CCA TCA CCA CCA CCA
24486733 TTA * 17 47/51 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTT GGT
24504070 AAC * 8 22/24 AAC AAC AAC AAC AGC AAC AAC AAG
24601982 CAA * 7 19/21 CAA CAA CAA CAA CAG CAA CAC
24653488 TCA * 10 28/30 TCA TCA TCA TCA TCA TCA TCA TCA TCT CCA
24676132 TGG * 7 19/21 TGG TGA TGG TGG TGT TGG TGG
24676723 CAA * 7 21/21 CAA CAA CAA CAA CAA CAA CAA
24691258 TGT * 7 19/21 TGT TTT TTT TGT TGT TGT TGT
24718241 TTA * 14 38/42 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA CTA TAT TTT
24830345 TTG * 8 22/24 TTG TTG TTG TTG TTA TTG TTG TTT
24896567 TTA * 10 27/30 TTA TTA TTA TTA TTA TTA TTA TTA TTT GCA
24977572 AGA * 11 30/33 AGA AGA AGA AGA AGA GGA AGA AGA AGG AGA AGG
24977624 GGA * 7 21/21 GGA GGA GGA GGA GGA GGA GGA
25008430 GTG * 7 19/21 GTG ATG GTG ATG GTG GTG GTG
25008456 TGG * 7 19/21 TGG TGG TGG TGA TGG TGG TGA
25008521 TGG * 7 20/21 TGG TGG TGG TGG TGG TGG TGC
25018132 AAC * 7 19/21 AAC AAC AGC AAC AAC AAC AAA
25021659 AAT * 7 19/21 AAT AAT AAT AAT AAT AAT GAG
25021680 AAG * 12 34/36 AAG AAG AAG AAG AAG AAG AGG AAG AGG AAG AAG AAG
25021822 AAT * 7 19/21 AAT AAT AAT AAT AAT AAT GAG
25021843 AAG * 12 33/36 AAG AAG AAG AAG AAG AGG AAG AGG AAG AAG AAG AAA
25064397 ACT * 7 19/21 ACT ACT ACC ATT ACT ACT ACT
25066782 AAC * 7 19/21 AAC AGC AAC AAC AAC AAA AAC
25070231 TTG * 8 22/24 TTG TTG TTG TTG TTG CTG CTG TTG
25112258 CTC * 8 22/24 CTC CTC CTC CTC GTC CTC CTC CTT
25127100 GAA * 7 19/21 GAA GAG GAA GAA GAA GAA GAG
25127133 GAA * 7 19/21 GAA GAA GAG GAA GAA GAA GGA
25127178 AGG * 10 27/30 AGG AGG ACG AGG AGG AGG AGG AGG CGG TGG
25127218 GGA * 21 57/63 GGA GGA GGA GGA GGG GGA GGA GGA GGG GGA GGA GGG GGA GGA GGA GGG GGT GGA GGA GGA AGA
25134877 ATA * 8 22/24 ATA ATA ATA ATA ATG GTA ATA ATA
25261905 CAT * 7 19/21 CAT CAT CAT CAT CAT CAC AAT
25292750 TGA * 7 20/21 TGA TGA CGA TGA TGA TGA TGA
25418623 TAT * 12 34/36 TAT TAT TAT TAT TAT TAT TAT TAT TGT TAT AAT TAT
25435071 ATT * 8 22/24 ATT ATT ATT ATT GTT GTT ATT ATT
25485839 CAA * 7 20/21 CAA CAA CAA CAA CAA AAA CAA
25596984 CCT * 7 19/21 CCT CCT CCT CCA CCT CCT CCG
25609357 GGA * 18 49/54 GGA GGA AGA GGA GGA GGA AGA GGA GGA GGC GGA GGA GGA GGA AGA GGA GGA GGG
25632828 TTG * 8 22/24 TTG CTG TTG TTT TTG TTG TTG TTG
25911584 TTG * 12 33/36 TTG TTG TTG TTG TTG TTG TTG TTG TTG ATG ATG ATG
25983660 TCA * 8 22/24 TCA TCG TCA TCA TCA TCA TCA TGA
25998683 TTG * 14 38/42 TTG TTG TTG TTG TTG CTG TTG TTG TTG TTG TTG TTG TTT TGA
26030146 AGA * 7 19/21 AGA AGA AGG AGA AGG AGA AGA
26030182 AGA * 7 19/21 AGA AGA AGG AGA AGG AGA AGA
26039929 CTC * 7 19/21 CTC CTC CTC CTC CTC CTC CCA
26131696 CCT * 8 22/24 CCT CCT CCT CCT CCT CTT CGT CCT
26260875 CGC * 9 25/27 CGC CGC CGC CGC CGC CGC CGC CGC CAT
26329895 TTA * 9 25/27 TTA TTA TTA TTA TTA TTA TTA TTT TTT
26424846 GTG * 8 22/24 GTG GTG GTG GTG GTG GAG GTG GTA
26424872 GGT * 22 60/66 GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GAT GGT AGT GCT GGT GGT GAT AGT GAT GGT GGT
26424952 TGG * 7 20/21 TGG TGG TGA TGG TGG TGG TGG
26425014 TGG * 9 25/27 TGG TGG TGG TGA TGG TGG TGG TGG TGA
26425047 TGG * 8 22/24 TGG TGG TGA TGG TGG TAG TGG TGG
26425078 GGT * 7 19/21 GGT GAT GGT GGT GGT GAT GGT
26425113 TGG * 7 19/21 TGG TGT TGG TGG TGG TGA TGG
26439870 TCT * 12 33/36 TCT TCT TCC TCT TCT TCT TCT TCT TCT TCT TTT TTT
26515342 TTG * 8 22/24 TTG CTG TTG TTG TTG TTT TTG TTG
26549017 TAA * 8 22/24 TAA TAA TAA TAA CAA CAA TAA TAA
26646361 ATG * 7 19/21 ATG ACG ATG ATG ATG ATG AAG
26691682 ATT * 7 19/21 ATT GTT ATC ATT ATT ATT ATT
26733159 AAC * 7 19/21 AAC AAC AAC AAT AAT AAC AAC
26790161 GGA * 7 19/21 GGA GGA GGA GGA GGA GGA GAG
26936228 TCC * 8 22/24 TCC TTC TCC TCC TCC TCC TCC TTC
26947230 AAT * 7 20/21 AAT AAT AAT AAT ATT AAT AAT
27156526 TTG * 8 22/24 TTG TTG TTG TTG TTG TTG CTG TTT
27213839 AGG * 7 19/21 AGG ATG AAG AGG AGG AGG AGG
27223967 GAG * 15 42/45 GAG GAG GAA GAG AAG GAG GAG GAG GAG GAA GAG GAG GAG GAG GAG
27295289 TAT * 7 19/21 TAT TAT TAT TAT TAT TAT TTA
27341916 ACT * 10 27/30 ACT GCT GCT ACT ACT ACT ACT ACT ACT ACC
27342972 TAC * 7 19/21 TAC TAC TAC TAC CAC TAT TAC
27349177 TCA * 8 22/24 TCA TCA TCA TCA TGA TCA CCA TCA
27452523 AAT * 7 19/21 AAT AAT AAT AAT AAA AAT AAA
27459100 AAC * 9 25/27 AAC AAC AAC AAC AAC AAC AAA AAC AAG
27548960 TGT * 7 19/21 TGT TGT TAC TGT TGT TGT TGT
27597573 AAC * 7 19/21 AAC AAC AAC AAC AAC AAA AAA
27625241 ATA * 7 19/21 ATA ATG ATA ATA ATA ATA AGA
27737364 TCT * 7 19/21 TCT TCT TCT TCT TCT TTT TTT
27779668 AAT * 16 44/48 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AGT TGC
27792021 CCG * 8 22/24 CCG CCG CCG CCG CCG CCG CTG CCT
27811663 ATT * 8 22/24 ATT ATT ATT ATT ATT ATT ATT TTG
27836018 AGC * 7 20/21 AGC AGC AGC AGC AGC AGC AGA
27941675 GAG * 8 22/24 GAG GAG GAG GAG GAA GAG GAG GGG
27942088 CAA * 7 19/21 CAA CAA CAA CAA CAA AAA CAG
27942561 TTA * 7 19/21 TTA TTA TTA TTA TTA TTT TTT
28030390 TGT * 11 30/33 TGT TGT TGT TGT TTT TGT TGT TGT TGC TGT TTT
28054808 GGA * 7 19/21 GGA GGA GAA GGA GGA AGA GGA
28059890 AAT * 10 27/30 AAT AAT AAT AAT GGT AAT AAT AAT AAT AAA
28074361 AAC * 7 20/21 AAC AAC AAC AAC AAC AAA AAC
28078668 AAT * 7 20/21 AAT AAT AAT AAT AAT AAT AAA
28086068 GTG * 8 22/24 GTG GTG GTG GTG GTG GTG GTG TTT
28259060 TTG * 7 20/21 TTG TTG TTG TTG TTG TTG TTT
28288632 AAC * 7 19/21 AAC AAC AAC AGC AAC AAC AAA
28321811 CAA * 8 23/24 CAA CAA CAA CAA CAA CAA CTA CAA
28362241 TAC * 12 33/36 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAA TAC TCA
28371685 TAA * 7 19/21 TAA CAA TAA TAA TAA TCA TAA
28428821 CTT * 8 22/24 CTT CTT CTT CTT CTT CTT TTT TTT
-----------------------------------------------------------------------------------------
Total sequence length......................... 28515322
Minimum Tri-Nucleotide repeat units........... 7
Total number of repeats detected.............. 670
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 61 41 14 2 4 0 0 0 0 0 0 0 0
AAG 16 14 2 0 0 0 0 0 0 0 0 0 0
AAC 59 51 6 2 0 0 0 0 0 0 0 0 0
ATA 24 17 6 1 0 0 0 0 0 0 0 0 0
ATT 41 32 5 2 2 0 0 0 0 0 0 0 0
ATG 8 6 1 1 0 0 0 0 0 0 0 0 0
ATC 14 12 2 0 0 0 0 0 0 0 0 0 0
AGA 7 5 1 0 1 0 0 0 0 0 0 0 0
AGG 11 9 2 0 0 0 0 0 0 0 0 0 0
AGC 4 4 0 0 0 0 0 0 0 0 0 0 0
ACA 12 6 3 2 1 0 0 0 0 0 0 0 0
ACT 2 1 1 0 0 0 0 0 0 0 0 0 0
ACC 6 2 1 2 0 0 0 0 0 0 0 0 1
TAA 17 14 1 1 1 0 0 0 0 0 0 0 0
TAT 19 15 4 0 0 0 0 0 0 0 0 0 0
TAG 2 2 0 0 0 0 0 0 0 0 0 0 0
TAC 3 2 1 0 0 0 0 0 0 0 0 0 0
TTA 53 31 7 7 7 1 0 0 0 0 0 0 0
TTG 66 50 14 2 0 0 0 0 0 0 0 0 0
TTC 12 11 1 0 0 0 0 0 0 0 0 0 0
TGA 4 3 1 0 0 0 0 0 0 0 0 0 0
TGT 17 12 5 0 0 0 0 0 0 0 0 0 0
TGG 13 12 1 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 6 5 1 0 0 0 0 0 0 0 0 0 0
TCT 5 3 1 0 0 0 0 0 0 0 0 0 1
TCC 20 16 3 1 0 0 0 0 0 0 0 0 0
GAA 8 5 1 1 1 0 0 0 0 0 0 0 0
GAT 3 1 1 0 1 0 0 0 0 0 0 0 0
GAG 14 10 2 2 0 0 0 0 0 0 0 0 0
GTA 2 2 0 0 0 0 0 0 0 0 0 0 0
GTT 13 11 2 0 0 0 0 0 0 0 0 0 0
GTG 8 5 2 0 1 0 0 0 0 0 0 0 0
GGA 7 5 0 0 1 1 0 0 0 0 0 0 0
GGT 3 1 1 0 0 0 1 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
GCT 3 3 0 0 0 0 0 0 0 0 0 0 0
GCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCC 3 3 0 0 0 0 0 0 0 0 0 0 0
CAA 31 26 4 1 0 0 0 0 0 0 0 0 0
CAT 7 7 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAC 13 5 2 1 0 1 2 0 1 1 0 0 0
CTA 1 0 1 0 0 0 0 0 0 0 0 0 0
CTT 8 3 1 3 0 0 0 0 1 0 0 0 0
CTG 4 3 1 0 0 0 0 0 0 0 0 0 0
CTC 9 7 2 0 0 0 0 0 0 0 0 0 0
CGG 2 1 1 0 0 0 0 0 0 0 0 0 0
CGC 6 5 1 0 0 0 0 0 0 0 0 0 0
CCA 6 1 1 3 1 0 0 0 0 0 0 0 0
CCT 11 8 2 0 1 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
61 AAT + 24 ATA + 17 TAA + 41 ATT + 53 TTA + 19 TAT = 215
16 AAG + 7 AGA + 8 GAA + 8 CTT + 12 TTC + 5 TCT = 56
59 AAC + 12 ACA + 31 CAA + 13 GTT + 66 TTG + 17 TGT = 198
8 ATG + 4 TGA + 3 GAT + 7 CAT + 14 ATC + 6 TCA = 42
0 AGT + 2 GTA + 2 TAG + 2 ACT + 1 CTA + 3 TAC = 10
11 AGG + 7 GGA + 14 GAG + 11 CCT + 9 CTC + 20 TCC = 72
4 AGC + 2 GCA + 1 CAG + 3 GCT + 4 CTG + 1 TGC = 15
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
6 ACC + 6 CCA + 13 CAC + 3 GGT + 8 GTG + 13 TGG = 49
0 GGC + 1 GCG + 2 CGG + 3 GCC + 1 CCG + 6 CGC = 13
-----------------------------------------------------------------------------------------
Genomic sequence
gi|8134251|ref|NT_001035.5|NT_001035| Homo sapiens 21q sequence.
Position Repeat Coverage Repeat
35690 TAT * 7 19/21 TAT GAT TAT TAT TAC TAT TAT
66029 TTA * 7 19/21 TTA TCT TTA TTA TTA TTA TTA
137276 TAA * 7 19/21 TAA AAA TAA TAA TAA TAA AAA
140155 TCC * 11 30/33 TCC TCC TCC TCT TCC TCC TCC TCC TCC TCT TTC
140188 TTC * 7 19/21 TTC TTC CCC TTC TTC TTC TTC
149663 CTT * 17 46/51 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT ATT ATT ATT ATT ATT
149714 ATT * 7 20/21 ATT ATT ATT ATT ATT AAT ATT
-----------------------------------------------------------------------------------------
Total sequence length......................... 219256
Minimum Tri-Nucleotide repeat units........... 7
Total number of repeats detected.............. 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCC 1 0 1 0 0 0 0 0 0 0 0 0 0
CTT 1 0 0 0 1 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 1 ATT + 1 TTA + 1 TAT = 4
0 AAG + 0 AGA + 0 GAA + 1 CTT + 1 TTC + 0 TCT = 2
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 1 TCC = 1
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 0
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|8134250|ref|NT_003545.2|NT_003545| Homo sapiens 21q sequence.
Position Repeat Coverage Repeat
91585 TCT * 7 19/21 TCT TCT TCT TCT TCT TTT TTT
110418 ATA * 11 30/33 ATA ATG ATA ATA ATA ATA ATA ATA ATA ACA ACA
179745 CGC * 7 19/21 CGC CGC AGC CGC CGC TGC CGC
211765 ATT * 10 28/30 ATT ATT ATT ATT ATT ATT ATT ATT ATT TTG
323360 CAG * 7 19/21 CAG CAG CAG GAG CAG CAT CAG
388659 CCG * 13 36/39 CCG CCG CCG CCG CCG CCG CCG CCG CCG CCG CCC CCG GGG
441327 ACA * 7 19/21 ACA CAA ACA ACA ACA ACA ACA
441502 AAT * 7 19/21 AAT AGT AAT AAT AGT AAT AAT
442681 GGA * 7 19/21 GGA GGT GGA GGA GGA GCA GGA
512188 ATT * 18 51/54 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT TGA
569190 TTA * 8 22/24 TTA TTA TTA TTA TTA TTA TTT TGA
610490 GAT * 11 31/33 GAT GAT GAT GAT GGT GAT GAT GAT GGT GAT GAT
627656 TAT * 12 35/36 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAA
769210 CTG * 7 19/21 CTG CTC CTG CTT CTG CTG CTG
963432 GTG * 7 19/21 GTG GTG GGG GTG GGG GTG GTG
969837 TGG * 13 36/39 TGG TGG TGG TGG TGG TGG TGG TGG TGG TGT TTG AGG TGG
989297 AAT * 8 22/24 AAT AAT AAT AAT AAT AAT AAA AAA
1100393 TGT * 7 19/21 TGT TCT TGT TGT TAT TGT TGT
1128840 ATT * 11 31/33 ATT ATT ATT ATT ATT ATT ATT ATT CTT ATT TTT
1144122 CCG * 7 19/21 CCG CCG CCG CCG CCG CCG CTC
1144188 CCG * 7 19/21 CCG CCG CCG CCG CTG CCG CCC
1246760 TGT * 7 20/21 TGT TGT TTT TGT TGT TGT TGT
1249245 GGA * 8 23/24 GGA GGA GGA GGA GGA GGA AGA GGA
1276938 CCG * 7 19/21 CCG CCG CCG CCG CTG CCG TCG
1279938 TTC * 7 19/21 TTC TTC TTC TTC TTC TTT TTT
1281926 AAC * 7 19/21 AAC AAC AAC AAC AAC AAA AAT
1301682 AAG * 7 20/21 AAG AAG AAG AAG AAG AAG AAA
1337271 AAT * 11 31/33 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT TAG
-----------------------------------------------------------------------------------------
Total sequence length......................... 1378654
Minimum Tri-Nucleotide repeat units........... 7
Total number of repeats detected.............. 28
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 3 2 1 0 0 0 0 0 0 0 0 0 0
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 0 1 0 0 0 0 0 0 0 0 0 0
ATT 3 0 2 0 1 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 0 1 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 2 2 0 0 0 0 0 0 0 0 0 0 0
TGG 1 0 0 1 0 0 0 0 0 0 0 0 0
TCT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 0 1 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CGC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCG 4 3 0 1 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
3 AAT + 1 ATA + 0 TAA + 3 ATT + 1 TTA + 1 TAT = 9
1 AAG + 0 AGA + 0 GAA + 0 CTT + 1 TTC + 1 TCT = 3
1 AAC + 1 ACA + 0 CAA + 0 GTT + 0 TTG + 2 TGT = 4
0 ATG + 0 TGA + 1 GAT + 0 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 2 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 2
0 AGC + 0 GCA + 1 CAG + 0 GCT + 1 CTG + 0 TGC = 2
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 1 GTG + 1 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 4 CCG + 1 CGC = 5
-----------------------------------------------------------------------------------------
Genomic sequence
gi|8134248|ref|NT_002835.3|NT_002835| Homo sapiens 21q sequence.
Position Repeat Coverage Repeat
47850 AAC * 7 19/21 AAC AAA AAC AAC AAC AAC AAA
66154 TCC * 8 22/24 TCC TCC GCC TCC TCG TCC TCC TCC
68604 CAC * 12 33/36 CAC CAC CAC CAC CAT CAC CAC CAT CAC CAT CAC CAC
68652 CAC * 28 76/84 CAC CAT CAC CAT CAC CAC CAC CAC CAC CAA CAC CAC CAC CAT CAC CAC CAT CAC CAC CAC CAC CAT CAC CAC CAC CAT CAC CAA
68742 CAC * 7 19/21 CAC CAC CAT CAC CAC CAT CAC
68766 CAC * 10 27/30 CAC CAC CAC CAT CAC CAC CAC CAT CAC CAA
68802 CAC * 27 73/81 CAC CAC CAT CAC CAT CAC CAC CAC CAC CAC CAA CAC CAC CAC CAT CAC CAC CAT CAC CAC CAC CAC CAT CAC CAC CAT CAG
68901 CAC * 7 19/21 CAC CAC CAT CAC CAT CAC CAC
68925 CAC * 8 22/24 CAC CAT CAC CAC CAT CAC CAC CAC
68952 CAC * 40 108/120 CAC CAC CAC CAT CAC CAC CAT CAC CAC CAC CAC CAT CAC CAC CAC CAT CAC CAC CAC CAC CAT CAC CAC CAC CAT CAC CAC CAC CAA CAC CAC CAC CAT CAC CAT CAC CAT CAC CAT CAT
69096 CAC * 8 22/24 CAC CAC CAT CAC CAT CAC CAC CAC
69123 CAC * 11 30/33 CAC CAC CAC CAA CCC CAC CAC CAC CAC CAT CAC
69159 CAC * 11 30/33 CAC CAC CAC CAC CAC CAT CAC CAT CAC CAC CAT
69222 CAC * 7 19/21 CAC CAC CAT CAC CAT CAC CAC
69246 CAC * 47 127/141 CAC CAC CAT CAC CAC CAC CAA CAC CAC CAC CAT CAC CAC CAT CAC CAC CAC CAC CAT CAC CAC CAC CAC CAC CAC CAC CAT CAC CAC CAC CAT CAC CAC CAC CAA CAC CGC CAC CAT CAC CAT CAC CAC CAT CAC CAT CAT
69388 ACC * 7 19/21 ACC ATC ACC ATC ACC ACC ACC
69411 CAC * 10 27/30 CAC CAT CAC CAC CAC CAA CAC CAC CAC GAC
69444 CAC * 32 87/96 CAC CAC CAC CAC CAC CAC CAT CAC CAC CAC CAC CAC CAT CAC CAT CAC CAC CAC CAT CAC CAT CAC CAC CAT CAT CAC CAC CAC CAT CAC CAC CAT
69555 CAC * 18 49/54 CAC CAC CAT CAC CAC CAC CAT CAC CAC CAC CAC CAC CAC CAT CAC CAT CAT CAC
69612 CAC * 8 22/24 CAC CAT CAC CAC CAT CAC CAC CAC
69639 CAC * 12 33/36 CAC CAC CAC CAC CAT CAC CAC CAC CAT CAC CAA CAC
69678 CAC * 8 22/24 CAC CAC CAT CAC CAC CAC CAT CAC
69756 CAT * 7 19/21 CAT CAC CAT CAG CAT CAT CAT
69777 CAC * 21 57/63 CAC CAC CAC CAC CAT CAC CAC CAC CAC CAA CAC CAC CAC CAT CAC CAT CAC CAC CAT CAC CAT
69844 ACC * 7 19/21 ACC ATC ACC ATC ACC ACC ACC
69867 CAC * 10 27/30 CAC CAT CAC CAC CAC CAA CAC CAC CAC AAC
69900 CAC * 25 68/75 CAC CAC CAC CAA CAC CAC CAC CAC CAC CAT CAC CAT CAC CAC CAC CAC CAC TAC CAC CAC CAT CAC CAT CAC CAT
69981 CAC * 7 19/21 CAC CAC CAC CAT CAC CAC CAT
70005 CAC * 22 60/66 CAC CAC CAT CAC CAC CAC CAC CAC CAT CAC CAC CAA CAC CAC CAT CAC CAC CAC CAT CAC CAT CAC
70098 CAC * 7 19/21 CAC CAC CAT CAC CAT CAC CAC
70152 CAC * 7 19/21 CAC CAC CAT CAC CAT CAC CAC
70176 CAC * 12 33/36 CAC CAC CAC CAC CAT CAC CAT CAC CAC CAC CAC CAT
70218 CAC * 12 33/36 CAC CAC CAC CAT CAC CAC CAC CAC CAT CAC CAT CAC
89986 AAT * 15 42/45 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAA ATG
147741 AGC * 8 23/24 AGC AGC AGC AGC AGC AGC AGC AGG
159589 CCG * 8 22/24 CCG CCG CTG CCG CCG CTG CCG CCG
264901 TTC * 7 20/21 TTC TTC TTC TTC TTC TTC TTT
264922 CCT * 10 27/30 CCT CCT CCT CCT CCT CCT CCT CCC CCC CCC
264956 CTC * 8 22/24 CTC CTC CTC CAC CAC CTC CTC CTC
266425 ATA * 7 19/21 ATA ACA GTA ATA ATA ATA ATA
322459 AAC * 7 20/21 AAC AAC AAC AAC AAC AAA AAC
353320 ATC * 20 54/60 ATC AAC ATC ATC ATC ATC ATC ATC ATC ATC ACC ATC ATC ACC ATC ATC ATC ACC ATC AAA
365273 CTC * 7 19/21 CTC CTC TTC CTC CTC CTC TTC
474797 TTA * 7 19/21 TTA TTA TTA TTA TTA TTT TTG
496518 AAG * 7 19/21 AAG AAG AAG AAG AAG AAG CTG
520462 CAA * 9 25/27 CAA CAA CAA CAA CAA CAA CAA GAA CTA
534956 AGA * 7 19/21 AGA AGA AGA CGA AGA AGC AGA
536168 GAG * 7 19/21 GAG GAA GAG GAG CAG GAG GAG
572026 AAT * 11 31/33 AAT AAT AAT AAT AAT AAT AAT AAT AAC AAC AAT
589905 AAC * 9 25/27 AAC AAC AAC AAC AAC AAC AAC AAA AAA
640335 CAA * 7 20/21 CAA CAA CAA CAA CAA CAA AAA
698223 GTT * 8 22/24 GTT TTT TTT GTT GTT GTT GTT GTT
774343 TTA * 7 19/21 TTA TTA TTA TTA TTA TTT TTT
813146 TCT * 7 19/21 TCT TTT TCT TCT TCT TCT TTT
833773 CAA * 8 22/24 CAA CAA CAA CAA CAA CAA CAA AAC
848420 GGA * 11 30/33 GGA GGA GGA AGA GGA GGA GGA GGA GGA CCA GGA
862250 ATT * 7 21/21 ATT ATT ATT ATT ATT ATT ATT
922023 AAT * 11 31/33 AAT AGT AAT AAT AAT AAT AAT AAT AAT AAT AAA
952405 GAG * 22 61/66 GAG GAG GAG GAG GAA GAG GAG GAG GAG GAG GAA GAG GAG GAG GAG GAG GAG GAA GAG GAG GAG GGT
979848 TCC * 8 22/24 TCC CCC TCC TCC TCC TCC TCC TCA
1080540 AGG * 7 19/21 AGG AGA AGG GGG AGG AGG AGG
1093763 TAT * 7 20/21 TAT TAT TAT TAT TAT TAT TTT
1152177 TGG * 8 22/24 TGG TGA TGG TGG TGG TGG TGA TGG
1152250 GTG * 7 19/21 GTG ATG GTG GTG GTG TTG GTG
1152281 TGA * 7 19/21 TGA TGG TGA TGA TGA TGG TGA
1152322 GTG * 8 22/24 GTG GTG GTG ATG GTG GTG GTG ATG
1152374 TGG * 8 22/24 TGG CAG TGG TGG TGG TGG TGG TGG
1152436 GTG * 10 28/30 GTG GTG GTG GTG GTG ATG GTG GTG ATG GTG
1152492 GGT * 7 19/21 GGT GAT GGT GGT GGT GGT GGA
1152551 GTG * 9 25/27 GTG GTG GTG CTG GTG CTG GTG GTG GTG
1160257 GAG * 7 19/21 GAG GAG GAG GTG GAG GAG GGG
1215926 AAC * 7 19/21 AAC AAC AGC AAC AAC AAC AAA
1373969 AGG * 7 19/21 AGG AGG AGG AAG AGG AGG AAG
1454388 GGA * 7 19/21 GGA GGA GGT GGA GGA AGA GGA
1588951 GCA * 7 19/21 GCA GCA GCA GCA GCA GCA GAT
1592429 CAC * 7 19/21 CAC TAC AAC CAC CAC CAC CAC
1641073 TAT * 8 23/24 TAT TAT TAT TAT TAT TAT TAT TAA
1654259 AGG * 7 19/21 AGG GAG AGG AGG AGG AGG AGG
1657102 CAA * 7 19/21 CAA AAA CAA AAA CAA CAA CAA
1740401 TTG * 10 27/30 TTG TTG TTG TTG CTG TTG TTG TTG TTT TGG
1807262 GGC * 14 39/42 GGC GGC CGT GGC GGC GGC GGC GGC GGC GGC GGC AGC GGC GGC
1833682 GCA * 7 19/21 GCA GCA GCA GCA GCA GCG CCA
1914336 TTG * 7 19/21 TTG TTT TTG TTG TTG TTG TTT
2099220 AAC * 8 22/24 AAC AAA AAC AAC AAC AAC AAC AAA
2108277 GGA * 7 19/21 GGA GGA GGG GGA GGA GGA GGG
2146809 GGA * 10 28/30 GGA GGA GCA GGA GGA GGT GGA GGA GGA GGA
2273818 AAG * 7 20/21 AAG AAG AAG AAG AAG AAG AAA
2287607 GGC * 7 20/21 GGC GGC GGC GGG GGC GGC GGC
2342309 TTC * 8 22/24 TTC TTC TTC TTC TTC TTC TTT TTT
2397520 TTG * 7 19/21 TTG TTG TTG TTG TTG CTG CTG
2439848 TTA * 7 19/21 TTA TTA TTA TTA TTA GTG TTA
2546173 CCT * 7 19/21 CCT CCT CCC CCT CCT CCT CCC
2568098 TAA * 8 22/24 TAA TAA TAA TAA TAA TAA TAC TAT
2569381 TGT * 7 19/21 TGT TGT TGT TGT TGT TTT TGA
2603468 GTT * 7 19/21 GTT TTT GTT GTT GTT GTC GTT
2709890 ATA * 7 19/21 ATA ATA ATA ATA ATA ATA AGG
2709911 AGG * 11 30/33 AGG AGG AGG AGG AGG AGG AGG AGG AAA AGA AGG
2819848 TGG * 8 22/24 TGG TGG TGG TGG TGG TGG TAG TAG
2820494 GTG * 14 38/42 GTG GTG GTG GTG ATG GTG GTG GTG ATG GTG GTG GTG GTG ATA
2820620 GTG * 98 265/294 GTG GTG GTG GTG ATG GTG GTG GTG ATG GTG GTG GTG GTT GTG GTG GTG GTG GTG GTG GTG GTG ATG GTG GTG ATG GTG GTG GTG ATG GTG GTG ATG GTG GTG GTG ATG GTG GTG GTG ATG GTG GTG GTG ATG GTG GTG GTG ATG ATG GTG ATG GTG GTG ATG GTG GTG GTG GTG GTG ATG ATG GTG GTG ATG ATG ATG GTG ATG GTG GTG ATG GTG ATG GTG GTG GTG GTG ATG GTG GTG GTG ATG GTG GTG GTG ATG GTG GTG GTG ATG GTG GTG GTG GTG ATC GTG GTG GTA
2820917 GTG * 13 36/39 GTG GTG GTG GTG ATG GTG GTG ATG GTG GTG GTG GTG ATG
2820974 TGG * 7 19/21 TGG TGG CGG TGG TGA TGG TGG
2821026 GGT * 7 19/21 GGT GGT GAT GGT GGT GGT AGT
2821073 TGG * 8 22/24 TGG TGG TGG TGG TAA TGG TGG TGG
2821130 TGG * 7 19/21 TGG TGA TGG TGG TGG TGG TGA
2821157 TGG * 7 19/21 TGG TGA TGG TGG TGG TGG CGG
2821181 TGG * 7 20/21 TGG TGG TGG TGG TGG TGA TGG
2821208 TGG * 7 20/21 TGG TGA TGG TGG TGG TGG TGG
3011725 CAA * 7 19/21 CAA AAA CAA CAA CAA CAA AAA
3025208 CCT * 10 27/30 CCT CCT CTT CCT CCT CCT CCT CCT CTT CCC
3031800 TGG * 8 23/24 TGG TGG TGG TGG TGG TGG TGG TGC
3040593 TAT * 7 20/21 TAT TAT TAT TAT TAT TAT TTT
3109213 ATT * 9 25/27 ATT ATT ATT TTT ATT ATT ATT GTT ATT
3121809 TTA * 7 19/21 TTA TTA TTA TTA TTA TTT TTT
3133959 AAC * 7 19/21 AAC AAC AAC AAT AAC AAC AAA
3144147 CCT * 7 21/21 CCT CCT CCT CCT CCT CCT CCT
3144215 CTC * 7 19/21 CTC CTC TTC CTC CTC CTT CTC
3144253 CCT * 8 23/24 CCT GCT CCT CCT CCT CCT CCT CCT
3144325 CCT * 7 20/21 CCT GCT CCT CCT CCT CCT CCT
3144394 CCT * 7 20/21 CCT GCT CCT CCT CCT CCT CCT
3144620 CTC * 7 19/21 CTC TTC CTC CTC CCC CTC CTC
3153573 GGA * 7 20/21 GGA GGA GGA GGA AGA GGA GGA
3255591 ATT * 22 62/66 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT TTG AGA
3297122 TGG * 7 19/21 TGG TGG TGG TGG TGG AGC TGG
-----------------------------------------------------------------------------------------
Total sequence length......................... 3429800
Minimum Tri-Nucleotide repeat units........... 7
Total number of repeats detected.............. 124
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 3 0 2 1 0 0 0 0 0 0 0 0 0
AAG 2 2 0 0 0 0 0 0 0 0 0 0 0
AAC 6 6 0 0 0 0 0 0 0 0 0 0 0
ATA 2 2 0 0 0 0 0 0 0 0 0 0 0
ATT 3 2 0 0 0 0 1 0 0 0 0 0 0
ATC 1 0 0 0 0 1 0 0 0 0 0 0 0
AGA 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 4 3 1 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACC 2 2 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 3 3 0 0 0 0 0 0 0 0 0 0 0
TTA 4 4 0 0 0 0 0 0 0 0 0 0 0
TTG 3 2 1 0 0 0 0 0 0 0 0 0 0
TTC 2 2 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 11 11 0 0 0 0 0 0 0 0 0 0 0
TCT 1 1 0 0 0 0 0 0 0 0 0 0 0
TCC 2 2 0 0 0 0 0 0 0 0 0 0 0
GAG 3 2 0 0 0 0 1 0 0 0 0 0 0
GTT 2 2 0 0 0 0 0 0 0 0 0 0 0
GTG 7 3 1 2 0 0 0 0 0 0 0 0 1
GGA 5 3 2 0 0 0 0 0 0 0 0 0 0
GGT 2 2 0 0 0 0 0 0 0 0 0 0 0
GGC 2 1 0 1 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 5 5 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAC 29 11 9 0 1 1 1 2 1 1 0 0 2
CTC 4 4 0 0 0 0 0 0 0 0 0 0 0
CCT 7 5 2 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
3 AAT + 2 ATA + 1 TAA + 3 ATT + 4 TTA + 3 TAT = 16
2 AAG + 1 AGA + 0 GAA + 0 CTT + 2 TTC + 1 TCT = 6
6 AAC + 0 ACA + 5 CAA + 2 GTT + 3 TTG + 1 TGT = 17
0 ATG + 1 TGA + 0 GAT + 1 CAT + 1 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
4 AGG + 5 GGA + 3 GAG + 7 CCT + 4 CTC + 2 TCC = 25
1 AGC + 2 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 3
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
2 ACC + 0 CCA + 29 CAC + 2 GGT + 7 GTG + 11 TGG = 51
2 GGC + 0 GCG + 0 CGG + 0 GCC + 1 CCG + 0 CGC = 3
-----------------------------------------------------------------------------------------
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Tri-nucleotide repeats in Human Chromosome-21 Sequences
Minimum tri-nucleotide repeating units = 7 (allowing 10% mismatch)
Total 5 sequences searched with a total of 33824148 bp length
Total 838 repeats covering 21514 / 23448 base pairs
Length distribution of all tri-nucleotide repeats
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
no. of repeat-units 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 >=40
total repeats 408 165 37 63 53 20 10 19 13 3 13 9 1 1 4 5 0 1 2 0 1 2 0 1 1 1 0 0 0 0 0 0 0 5
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Length distribution of all tri-nucleotide repeats
No. of repeat units> 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
total repeats--> 610 136 42 25 6 6 3 3 2 0 0 5
AAT 43 17 3 4 0 0 0 0 0 0 0 0
AAG 17 2 0 0 0 0 0 0 0 0 0 0
AAC 58 6 2 0 0 0 0 0 0 0 0 0
ATA 20 7 1 0 0 0 0 0 0 0 0 0
ATT 35 7 2 3 0 1 0 0 0 0 0 0
ATG 6 1 1 0 0 0 0 0 0 0 0 0
ATC 12 2 0 0 1 0 0 0 0 0 0 0
AGA 6 1 0 1 0 0 0 0 0 0 0 0
AGG 12 3 0 0 0 0 0 0 0 0 0 0
AGC 5 0 0 0 0 0 0 0 0 0 0 0
ACA 7 3 2 1 0 0 0 0 0 0 0 0
ACT 1 1 0 0 0 0 0 0 0 0 0 0
ACC 4 1 2 0 0 0 0 0 0 0 0 1
TAA 16 1 1 1 0 0 0 0 0 0 0 0
TAT 19 5 0 0 0 0 0 0 0 0 0 0
TAG 2 0 0 0 0 0 0 0 0 0 0 0
TAC 2 1 0 0 0 0 0 0 0 0 0 0
TTA 37 7 7 7 1 0 0 0 0 0 0 0
TTG 52 16 3 0 0 0 0 0 0 0 0 0
TTC 15 1 0 0 0 0 0 0 0 0 0 0
TGA 4 1 0 0 0 0 0 0 0 0 0 0
TGT 15 5 0 0 0 0 0 0 0 0 0 0
TGG 23 1 1 0 0 0 0 0 0 0 0 0
TGC 1 0 0 0 0 0 0 0 0 0 0 0
TCA 5 1 0 0 0 0 0 0 0 0 0 0
TCT 6 1 0 0 1 0 0 0 0 0 0 1
TCC 18 4 2 0 0 0 0 0 0 0 0 0
GAA 5 1 1 1 0 0 0 0 0 0 0 0
GAT 1 2 0 1 0 0 0 0 0 0 0 0
GAG 12 2 2 0 0 1 0 0 0 0 0 0
GTA 2 0 0 0 0 0 0 0 0 0 0 0
GTT 13 2 0 0 0 0 0 0 0 0 0 0
GTG 9 3 2 1 0 0 0 0 0 0 0 1
GGA 10 2 0 1 1 0 0 0 0 0 0 0
GGT 3 1 0 0 0 1 0 0 0 0 0 0
GGC 1 0 1 0 0 0 0 0 0 0 0 0
GCA 4 0 0 0 0 0 0 0 0 0 0 0
GCT 3 0 0 0 0 0 0 0 0 0 0 0
GCG 1 0 0 0 0 0 0 0 0 0 0 0
GCC 3 0 0 0 0 0 0 0 0 0 0 0
CAA 31 4 1 0 0 0 0 0 0 0 0 0
CAT 8 0 0 0 0 0 0 0 0 0 0 0
CAG 2 0 0 0 0 0 0 0 0 0 0 0
CAC 16 11 1 1 2 3 3 2 2 0 0 2
CTA 0 1 0 0 0 0 0 0 0 0 0 0
CTT 3 2 3 1 0 0 0 1 0 0 0 0
CTG 4 1 0 0 0 0 0 0 0 0 0 0
CTC 12 2 0 0 0 0 0 0 0 0 0 0
CGG 1 1 0 0 0 0 0 0 0 0 0 0
CGC 6 1 0 0 0 0 0 0 0 0 0 0
CCA 1 1 3 1 0 0 0 0 0 0 0 0
CCT 13 4 0 1 0 0 0 0 0 0 0 0
CCG 5 0 1 0 0 0 0 0 0 0 0 0
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Frequency distribution of different tri-nucleotide repeat classes in all sequences
67 AAT + 28 ATA + 19 TAA + 48 ATT + 59 TTA + 24 TAT = 245
19 AAG + 8 AGA + 8 GAA + 10 CTT + 16 TTC + 9 TCT = 70
66 AAC + 13 ACA + 36 CAA + 15 GTT + 71 TTG + 20 TGT = 221
8 ATG + 5 TGA + 4 GAT + 8 CAT + 15 ATC + 6 TCA = 46
0 AGT + 2 GTA + 2 TAG + 2 ACT + 1 CTA + 3 TAC = 10
15 AGG + 14 GGA + 17 GAG + 18 CCT + 14 CTC + 24 TCC = 102
5 AGC + 4 GCA + 2 CAG + 3 GCT + 5 CTG + 1 TGC = 20
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
8 ACC + 6 CCA + 43 CAC + 5 GGT + 16 GTG + 25 TGG = 103
2 GGC + 1 GCG + 2 CGG + 3 GCC + 6 CCG + 7 CGC = 21
-----------------------------------------------------------------------------------------
Frequency distribution of repeats longer than 40 bp
7 AAT + 1 ATA + 2 TAA + 5 ATT + 12 TTA + 0 TAT = 27
0 AAG + 1 AGA + 2 GAA + 4 CTT + 0 TTC + 2 TCT = 9
1 AAC + 3 ACA + 1 CAA + 0 GTT + 3 TTG + 0 TGT = 8
1 ATG + 0 TGA + 1 GAT + 0 CAT + 1 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 2 GGA + 3 GAG + 1 CCT + 0 CTC + 2 TCC = 8
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 0
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
3 ACC + 3 CCA + 16 CAC + 1 GGT + 3 GTG + 0 TGG = 26
1 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Sequence-wise distribution of tri-nucleotide repeats
-----------------------------------------------------------------------------------------
Total Repeats-longer Sequence Number
Repeats than 40 bp 1 2 3 4 5
-------------------------------------------------------------------
AAT 67 7 0 61 0 3 3
AAG 19 0 0 16 0 1 2
AAC 66 1 0 59 0 1 6
ATA 28 1 1 24 0 1 2
ATT 48 5 0 41 1 3 3
ATG 8 1 0 8 0 0 0
ATC 15 1 0 14 0 0 1
AGA 8 1 0 7 0 0 1
AGG 15 0 0 11 0 0 4
AGC 5 0 0 4 0 0 1
ACA 13 3 0 12 0 1 0
ACT 2 0 0 2 0 0 0
ACC 8 3 0 6 0 0 2
TAA 19 2 0 17 1 0 1
TAT 24 0 0 19 1 1 3
TAG 2 0 0 2 0 0 0
TAC 3 0 0 3 0 0 0
TTA 59 12 0 53 1 1 4
TTG 71 3 2 66 0 0 3
TTC 16 0 0 12 1 1 2
TGA 5 0 0 4 0 0 1
TGT 20 0 0 17 0 2 1
TGG 25 0 0 13 0 1 11
TGC 1 0 0 1 0 0 0
TCA 6 0 0 6 0 0 0
TCT 9 2 2 5 0 1 1
TCC 24 2 1 20 1 0 2
GAA 8 2 0 8 0 0 0
GAT 4 1 0 3 0 1 0
GAG 17 3 0 14 0 0 3
GTA 2 0 0 2 0 0 0
GTT 15 0 0 13 0 0 2
GTG 16 3 0 8 0 1 7
GGA 14 2 0 7 0 2 5
GGT 5 1 0 3 0 0 2
GGC 2 1 0 0 0 0 2
GCA 4 0 0 2 0 0 2
GCT 3 0 0 3 0 0 0
GCG 1 0 0 1 0 0 0
GCC 3 0 0 3 0 0 0
CAA 36 1 0 31 0 0 5
CAT 8 0 0 7 0 0 1
CAG 2 0 0 1 0 1 0
CAC 43 16 1 13 0 0 29
CTA 1 0 0 1 0 0 0
CTT 10 4 1 8 1 0 0
CTG 5 0 0 4 0 1 0
CTC 14 0 1 9 0 0 4
CGG 2 0 0 2 0 0 0
CGC 7 0 0 6 0 1 0
CCA 6 3 0 6 0 0 0
CCT 18 1 0 11 0 0 7
CCG 6 0 0 1 0 4 1
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838 82
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© Division of Biochemical Sciences, National Chemical Laboratory, Pune 411008, INDIA