Tri-Nucleotide Repeats in Genomic Sequences
Tri-Nucleotide Repeats in
Drosophila melanogaster Chromosome-Arm-3R Genomic Scaffolds
Genomic sequence
gi|7316099|gb|AE002681.1|AE002681 Drosophila melanogaster genomic scaffold 142000013386043, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7296880|gb|AE003607.1|AE003607 Drosophila melanogaster genomic scaffold 142000013386043 section 8 of 8, complete sequence
Position Repeat Coverage Repeat
11105 GAA * 8 22/24 GAA GGA GAA GAA GAA GAA GAA GGA
13626 CTG * 10 27/30 CTG CTG CTG CTG CAC CTG CTG CTG CTG GTG
-----------------------------------------------------------------------------------------
Total sequence length......................... 95401
Total number of repeats detected.............. 2
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 1 GAA + 0 CTT + 0 TTC + 0 TCT = 1
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 1 CTG + 0 TGC = 1
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7296839|gb|AE003606.1|AE003606 Drosophila melanogaster genomic scaffold 142000013386043 section 7 of 8, complete sequence
Position Repeat Coverage Repeat
5354 TAA * 7 19/21 TAA TTC TAA TAA TAA TAA TAA
26494 GTT * 11 30/33 GTT GTT GTA GTT GTT GTT GTT GTA GTT GGT GTT
26554 GTT * 7 19/21 GTT GTT GTA GTT GGT GTT GTT
26613 TGT * 11 30/33 TGT TGT TGT TGT TGT AGT TGT TGT AGT TGG TGT
26668 GTT * 8 22/24 GTT GTT GTA GTT TTT GTT GTT GTT
26700 TGT * 7 19/21 TGT TGT AGT TGC TGT TGT TGT
26757 TGT * 8 22/24 TGT TGT TGT AGT TGG TGT TGT TGT
30831 AGC * 10 28/30 AGC GAC AGC AGC AGC AGC AGC AGC AGC AGC
128238 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC TGT TGT
129652 GCT * 7 19/21 GCT GCT ACT GCT ACT GCT GCT
131081 TGC * 8 22/24 TGC TGC TGC TGT TGC TGT TGC TGC
140114 TGC * 7 19/21 TGC TGT TGC TGC TAC TGC TGC
194518 AGC * 7 19/21 AGC AGC AAC AAC AGC AGC AGC
194574 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CAA
269226 GTT * 8 22/24 GTT GAT GTT GTT GTT GAT GTT GTT
280407 TAG * 7 19/21 TAG TAG TAG TAG AAG AAG TAG
292532 TAT * 7 19/21 TAT TAT TAT TAT TAT TAT ATT
-----------------------------------------------------------------------------------------
Total sequence length......................... 300275
Total number of repeats detected.............. 17
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGC 2 1 1 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TAG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 3 2 1 0 0 0 0 0 0 0 0 0 0
TGC 3 3 0 0 0 0 0 0 0 0 0 0 0
GTT 4 3 1 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 0 ATT + 0 TTA + 1 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 4 GTT + 0 TTG + 3 TGT = 7
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 1 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
2 AGC + 0 GCA + 1 CAG + 1 GCT + 0 CTG + 3 TGC = 7
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7296808|gb|AE003605.1|AE003605 Drosophila melanogaster genomic scaffold 142000013386043 section 6 of 8, complete sequence
Position Repeat Coverage Repeat
6689 GTT * 7 19/21 GTT GTC GTC GTT GTT GTT GTT
42296 GAC * 7 19/21 GAC GAC GAG GAC GAC GAC GAA
43703 ATG * 8 22/24 ATG TTG TTG ATG ATG ATG ATG ATG
43853 CAA * 7 19/21 CAA CAG CAA CAA CAA AAA CAA
44795 CAG * 10 27/30 CAG CAG CGG CAG CAG CAG CAG CAG CGG CGG
45208 CAG * 10 27/30 CAG CAG CAG CAG CAC CAT CAG CAG CAG CAA
45354 GCA * 9 25/27 GCA ACA GCA GCA GCA GCA ACA GCA GCA
45397 CAG * 8 22/24 CAG CAT CAG CAG CAG CAG CAT CAG
45424 CAG * 14 39/42 CAG CAG CAG CAG CAT CAG CAG CAG CAG CAT CAG CAA CAG CAG
48756 AAT * 7 20/21 AAT AAC AAT AAT AAT AAT AAT
116238 GAA * 7 19/21 GAA GAA GAA GAA GCA GAA GTA
128312 TGT * 7 19/21 TGT GGC TGT TGT TGT TGT TGT
166150 CAT * 7 20/21 CAT CAT CAT CAT CAC CAT CAT
175273 CTC * 10 27/30 CTC CTC CTC CTC CTC CTC CTC CCC CTC CCT
176205 TGC * 7 19/21 TGC TGC TGC TGC TGC GTC TGC
185514 ATA * 27 73/81 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ACA TGT GAT AAA
220772 CTG * 7 19/21 CTG CTG CTG TTG CTG TTG CTG
255416 TAA * 11 30/33 TAA TAA TCA TAA TAA TAA TAA TTA TAA TTA TAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 274591
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 0 0 0 0 0 0 1 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 0 1 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 4 1 2 1 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 1 ATA + 1 TAA + 0 ATT + 0 TTA + 0 TAT = 3
0 AAG + 0 AGA + 1 GAA + 0 CTT + 0 TTC + 0 TCT = 1
0 AAC + 0 ACA + 1 CAA + 1 GTT + 0 TTG + 1 TGT = 3
1 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 1
0 AGC + 1 GCA + 4 CAG + 0 GCT + 1 CTG + 1 TGC = 7
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7296793|gb|AE003604.1|AE003604 Drosophila melanogaster genomic scaffold 142000013386043 section 5 of 8, complete sequence
Position Repeat Coverage Repeat
32647 GAC * 7 19/21 GAC GAC GAC AAC GAC GAT GAC
59660 GCA * 11 31/33 GCA GCA GCA ACA GCA GCA GCA ACA GCA GCA GCA
59780 GCA * 8 22/24 GCA ACA GCA GCA GCA GCA GCA ACA
59912 ACA * 11 30/33 ACA ACA ACA ACA ACA GCA ACA ACA GCA GCA ACA
59945 GCA * 7 19/21 GCA GCA GCA GCA GCA GCA GAC
60312 CAG * 7 19/21 CAG CAG CAG CAA CAA CAG CAG
60438 CAG * 13 36/39 CAG CAC CAG CAG CAG CAA CAG CAG CAG CAG CAG CAG CAA
60785 GCA * 8 22/24 GCA GCA GCA GCA GCC ACA GCA GCA
61122 GCC * 7 19/21 GCC GCC GCC GCT GCC GCC GGC
61732 AAC * 7 19/21 AAC TGC AAC AAC AAC AAC AAC
69567 TAT * 13 36/39 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAC GAG TAT TAT
84598 GTT * 7 19/21 GTT GTC GTT GTC GTT GTT GTT
123177 TTG * 7 19/21 TTG CTG TTG TTG CTG TTG TTG
127283 CAA * 7 19/21 CAA CAA CAA CAA CAA AAA CTA
173990 ATT * 7 20/21 ATT TTT ATT ATT ATT ATT ATT
201898 TGC * 7 19/21 TGC TGC TGT TGC TGC AGC TGC
217834 TCC * 7 20/21 TCC TCC TCC TCC TCC TCC CCC
275577 GGT * 7 20/21 GGT GGT GGT GGT GGT GAT GGT
275765 TGG * 8 22/24 TGG TGG TGA TGG GGG TGG TGG TGG
275911 CTG * 8 22/24 CTG CTG CTG GTG CTG CTG CTG TTG
275936 TGC * 8 22/24 TGC TGC TGC TGG TGC TGG TGC TGC
291426 CTG * 7 19/21 CTG TTG CTG TTG CTG CTG CTG
291487 TGC * 7 20/21 TGC TGC TGC TGT TGC TGC TGC
301657 CTG * 7 19/21 CTG CTC CTG CTC CTG CTG CTG
-----------------------------------------------------------------------------------------
Total sequence length......................... 302700
Total number of repeats detected.............. 24
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 0 1 0 0 0 0 0 0 0 0 0 0
TAT 1 0 0 1 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 3 3 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 4 3 1 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 1 0 1 0 0 0 0 0 0 0 0 0
CTG 3 3 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 1 ATT + 0 TTA + 1 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 1 ACA + 1 CAA + 1 GTT + 1 TTG + 0 TGT = 5
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 1 TCC = 1
0 AGC + 4 GCA + 2 CAG + 0 GCT + 3 CTG + 3 TGC = 12
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 1 GGT + 0 GTG + 1 TGG = 2
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7296751|gb|AE003603.1|AE003603 Drosophila melanogaster genomic scaffold 142000013386043 section 4 of 8, complete sequence
Position Repeat Coverage Repeat
3223 GCT * 7 19/21 GCT CCT GCG GCT GCT GCT GCT
16925 AGT * 7 19/21 AGT ACT AGT AGT ACT AGT AGT
23788 TGC * 9 26/27 TGC TGT TGC TGC TGC TGC TGC TGC TGC
34544 CAA * 9 25/27 CAA CAA CAA CAA CAA CAA CAA CAA GAG
85210 TTG * 7 19/21 TTG CTG TTG TTG TTG CTG TTG
105941 CAC * 13 36/39 CAC TAC CAA CAC CAC CAC CAC CAC CAC CAC CAC CAC CAA
125353 TCA * 8 23/24 TCA TCA CCA TCA TCA TCA TCA TCA
128437 TAT * 12 33/36 TAT TAT TAT TAT TAT TAT AAT TAT TAT TTT TAT TTT
145826 GCT * 7 19/21 GCT GCT GCT GCA GCT GCC GCT
148281 TTC * 7 19/21 TTC TTG TTT TTC TTC TTC TTC
153162 TGC * 10 29/30 TGC TGC TGC TGC TGC TGC TGC TGC TGC GGC
182740 CTG * 7 19/21 CTG CTG CCG CTG CTG CTG CTT
241017 AAT * 7 19/21 AAT AAA AAT AAC AAT AAT AAT
242547 TAG * 7 19/21 TAG AAA TAG TAG TAG TAG TAG
262684 TGA * 7 19/21 TGA TGA CGT TGA TGA TGA TGA
264431 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAA CAT
264523 GCA * 7 19/21 GCA GCA GCA GCT GCA GCA ACA
264790 GCA * 9 25/27 GCA ACA GCA GCA GCA GCA GCA ACA GCA
264974 CAG * 8 22/24 CAG CAA CAG CAA CAG CAG CAG CAG
290380 AAT * 8 23/24 AAT AAT AAT AAT AAT AAT AAT AAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 294507
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 2 2 0 0 0 0 0 0 0 0 0 0 0
AGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 0 1 0 0 0 0 0 0 0 0 0 0
TAG 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TTC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 1 1 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CAC 1 0 0 1 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
2 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 3
0 AAG + 0 AGA + 0 GAA + 0 CTT + 1 TTC + 0 TCT = 1
0 AAC + 0 ACA + 1 CAA + 0 GTT + 1 TTG + 0 TGT = 2
0 ATG + 1 TGA + 0 GAT + 0 CAT + 0 ATC + 1 TCA = 2
1 AGT + 0 GTA + 1 TAG + 0 ACT + 0 CTA + 0 TAC = 2
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 2 GCA + 2 CAG + 2 GCT + 1 CTG + 2 TGC = 9
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7296683|gb|AE003602.1|AE003602 Drosophila melanogaster genomic scaffold 142000013386043 section 3 of 8, complete sequence
Position Repeat Coverage Repeat
14987 TGA * 8 22/24 TGA TGA TGA TGA TGA TTA CGA TGA
21925 GCA * 8 22/24 GCA GCA GCA ACA GCA GCA GCA GCT
22000 GCA * 10 28/30 GCA GCA GCA ACA GCA GCA GCA GCA GGA GCA
22267 GCA * 7 20/21 GCA GCA GCA GCA GCA GCA ACA
24272 CAG * 11 31/33 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CCC
24820 GCG * 7 19/21 GCG GCG GCG GCA GCG GCG GCA
30695 CTC * 8 22/24 CTC CTG CTC CTC CTC GTC CTC CTC
44135 GTT * 8 22/24 GTT GTT TTT GTT GTT GTT GTT GAT
52048 AGG * 7 19/21 AGG AGG AGG AGC AGG AGG CGG
68496 TGC * 7 19/21 TGC TAC TGC TGC TGC TGC TGT
68520 TGT * 7 19/21 TGT TGT TGT TGT TGT TGT TAG
80992 AAG * 7 19/21 AAG AAG AAG AAG AAG AAG GAC
81249 GAA * 7 19/21 GAA GAA AAA GAA GCA GAA GAA
99014 CAC * 7 19/21 CAC CAC CAC CAC AAC CCC CAC
111159 TAA * 8 22/24 TAA TAA TAA TAA TAA TAA TAA AAT
128073 GCA * 10 27/30 GCA GCA GCA GCA ACA ACA GCA GCA GCA GCC
227172 TAC * 7 20/21 TAC TAC TAC TAC TAC TAT TAC
243612 CCT * 7 19/21 CCT CCT GCT CCT GCT CCT CCT
292969 TCC * 7 19/21 TCC TCC TCC TCA TCC TCA TCC
-----------------------------------------------------------------------------------------
Total sequence length......................... 297266
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 4 2 2 0 0 0 0 0 0 0 0 0 0
GCG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 0 1 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 0 ATT + 0 TTA + 0 TAT = 1
1 AAG + 0 AGA + 1 GAA + 0 CTT + 0 TTC + 0 TCT = 2
0 AAC + 0 ACA + 0 CAA + 1 GTT + 0 TTG + 1 TGT = 2
0 ATG + 1 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 1 TAC = 1
1 AGG + 0 GGA + 0 GAG + 1 CCT + 1 CTC + 1 TCC = 4
0 AGC + 4 GCA + 1 CAG + 0 GCT + 0 CTG + 1 TGC = 6
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 1 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7296642|gb|AE003601.1|AE003601 Drosophila melanogaster genomic scaffold 142000013386043 section 2 of 8, complete sequence
Position Repeat Coverage Repeat
7384 GGT * 11 30/33 GGT GGA GGT GGT GGT GGA GGT GGT GGT GGA GGT
40607 CGG * 8 22/24 CGG AGG AGG CGG CGG CGG CGG CGG
52257 TTA * 7 19/21 TTA TGA TTA TTA TTA TTA TTG
63928 TGC * 8 22/24 TGC TGC TGC TGC TGC GGC TGG TGC
124463 CAG * 8 23/24 CAG CAG CAG CAG CAG CAA CAG CAG
164072 GCA * 8 22/24 GCA GCA GCA GCA GCA GTT GCA GCA
164217 CAG * 7 19/21 CAG CAG CAC CAA CAG CAG CAG
164326 GCA * 7 19/21 GCA GTA GCA GCA GCA GCA GGA
164350 GCA * 7 19/21 GCA GAA GCA GCA GCA GCA ACA
168633 TGT * 10 27/30 TGT TGT TGT TGT TTT TGT TGT TTT TGT TGC
175603 GGA * 7 19/21 GGA GGA GGA GGC GGA GGA GGT
234259 TAT * 8 23/24 TAT TAT TAC TAT TAT TAT TAT TAT
239415 CTG * 8 22/24 CTG CTG CTG CTG CTG ATG GTG CTG
287124 TAT * 7 19/21 TAT TAT TAT TGT TGT TAT TAT
301106 AGC * 7 19/21 AGC AGC AGG ATC AGC AGC AGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 303626
Total number of repeats detected.............. 15
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 2 2 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 3 3 0 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CGG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 2 TAT = 3
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 1 TGT = 1
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 1
1 AGC + 3 GCA + 2 CAG + 0 GCT + 1 CTG + 1 TGC = 8
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 1 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 1 CGG + 0 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7296607|gb|AE003600.1|AE003600 Drosophila melanogaster genomic scaffold 142000013386043 section 1 of 8, complete sequence
Position Repeat Coverage Repeat
5043 ATT * 8 22/24 ATT ATT ATT ATT ATT ATT AAA ATT
13155 TGC * 7 19/21 TGC TGC TGC TGC GTC TGC TGC
20187 TTA * 8 23/24 TTA TTA TTA TTA TTA TTA TTT TTA
25616 TGT * 7 19/21 TGT TGT GGT TGT TGT AGT TGT
25922 TGT * 7 19/21 TGT TGT GGT TGT TGT AGT TGT
44848 CTG * 7 19/21 CTG CGG CTG CTG CTG CTG CTC
48997 GGT * 7 19/21 GGT GGT GGT GGT GGC GGT GGC
67216 CTT * 7 19/21 CTT CTT CTT TTT CTT TTT CTT
72646 CTT * 7 20/21 CTT CTT CTT CTC CTT CTT CTT
91415 AAT * 86 232/258 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT ATT AAT AAT ATT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT GAT AAT AAT AAT AAT AGT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAG AAT AAT AAT AAT AAT AAT AAA ATA AGT TTA AAG AGT AGT GCA TTT AAT TTT CAC CAG
103688 ATC * 7 19/21 ATC GTC ATT ATC ATC ATC ATC
108769 TAT * 7 19/21 TAT TAT TAT TAT TAT CGT TAT
139273 ATT * 8 22/24 ATT ATT ATT ATT ATT ATT ATT AAG
193636 AGC * 14 38/42 AGC AAC AGC AGC AGC AGC AGC AGC AGC AAA AGC AGC AGC GGC
199946 CTG * 8 22/24 CTG CTA CTC CTG CTG CTG CTG CTG
214180 TAT * 10 28/30 TAT ATT TAT TAT TAT TAT TAT TAT TAT TAT
226893 CCA * 8 22/24 CCA GCA CCA CCA CCA CCA TCA CCA
276829 AAG * 8 22/24 AAG AAA AAG AAG AAA AAG AAG AAG
-----------------------------------------------------------------------------------------
Total sequence length......................... 291545
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 0 0 0 0 0 0 0 0 0 0 0 1
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 2 2 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 0 0 1 0 0 0 0 0 0 0 0 0
TAT 2 1 1 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTT 2 2 0 0 0 0 0 0 0 0 0 0 0
CTG 2 2 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 2 ATT + 1 TTA + 2 TAT = 6
1 AAG + 0 AGA + 0 GAA + 2 CTT + 0 TTC + 0 TCT = 3
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 2 TGT = 2
0 ATG + 0 TGA + 0 GAT + 0 CAT + 1 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 0 GCA + 0 CAG + 0 GCT + 2 CTG + 1 TGC = 4
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 1 CCA + 0 CAC + 1 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7316097|gb|AE002699.1|AE002699 Drosophila melanogaster genomic scaffold 142000013386040, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7298913|gb|AE003675.1|AE003675 Drosophila melanogaster genomic scaffold 142000013386040 section 5 of 5, complete sequence
Position Repeat Coverage Repeat
33433 TGC * 7 19/21 TGC TGC TGC TGT TGG TGC TGC
37990 TGG * 12 33/36 TGG GGA TGG TGG TGG TGG TGG TGG TGG TGG TGT TGG
38026 TGC * 7 19/21 TGC TGC TGC TGC TGC TGT TGT
40058 CCG * 8 22/24 CCG CCG CCG CCG CTG CCG CCT CCG
53720 TAA * 7 19/21 TAA CAA TAA TAA TAA TAA TGA
88729 GGT * 13 36/39 GGT GGC GGT GGT GGT GGT GGC GGT GGT GGT GGT GGT GGA
120713 TTG * 7 19/21 TTG TGG TTG GTG TTG TTG TTG
120737 TTG * 8 22/24 TTG TTG TTG TTG TTC TTG TTG TTT
141793 ATG * 7 19/21 ATG GCG ATG ATG ATG ATG ATG
-----------------------------------------------------------------------------------------
Total sequence length......................... 145786
Total number of repeats detected.............. 9
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGG 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
GGT 1 0 0 1 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 2 TTG + 0 TGT = 2
1 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 2 TGC = 2
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 1 GGT + 0 GTG + 1 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 1 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298877|gb|AE003674.1|AE003674 Drosophila melanogaster genomic scaffold 142000013386040 section 4 of 5, complete sequence
Position Repeat Coverage Repeat
8389 ATT * 8 22/24 ATT ATT TTT AAT ATT ATT ATT ATT
50175 CAT * 8 22/24 CAT CAT CAT CAT CAT CAT CAT CGA
68174 CAG * 8 22/24 CAG CAG CAG CTG CCG CAG CAG CAG
68429 CAG * 7 19/21 CAG CAC CAC CAG CAG CAG CAG
85460 GCT * 8 22/24 GCT GCT GCT GCT GCT GCT GTT GGT
100035 GCA * 8 22/24 GCA GCT GCA GCA GCA GCA ACA GCA
100185 GCA * 8 22/24 GCA GCA GCA CCA GCA ACA GCA GCA
100828 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CCG
114141 ATC * 7 19/21 ATC GTC GTC ATC ATC ATC ATC
116022 AGC * 7 19/21 AGC CGC CGC AGC AGC AGC AGC
141631 CTG * 8 22/24 CTG CTG CTG CTG CCA CTG CTG CTG
168657 GCA * 7 19/21 GCA GCC GCA GCA GCA GCA ACA
168681 GCA * 7 19/21 GCA GCT GCA GCT GCA GCA GCA
199052 TCG * 7 19/21 TCG TCG CCG TCG ACG TCG TCG
218890 GAA * 7 19/21 GAA GAA GAA GAG GGA GAA GAA
254164 GCA * 7 21/21 GCA GCA GCA GCA GCA GCA GCA
271419 GGA * 9 25/27 GGA GGA GGA GGA GTA GGA GGA GGA GGC
276355 AGC * 7 19/21 AGC AGC AGC AGT AGC AGC AAC
-----------------------------------------------------------------------------------------
Total sequence length......................... 298028
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 5 5 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 3 3 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 1 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 1 GAA + 0 CTT + 0 TTC + 0 TCT = 1
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 1 CAT + 1 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 1
2 AGC + 5 GCA + 3 CAG + 1 GCT + 1 CTG + 0 TGC = 12
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 1 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298860|gb|AE003673.1|AE003673 Drosophila melanogaster genomic scaffold 142000013386040 section 3 of 5, complete sequence
Position Repeat Coverage Repeat
35332 TGC * 7 20/21 TGC TGC TGC TGC TGC TGC TGT
79140 TGG * 8 23/24 TGG TGG TGG TGG TGA TGG TGG TGG
81025 TAT * 12 33/36 TAT TAT TAT TAT TAT TAT TAT TTT TAT TAT TAT ATT
107929 GCT * 7 19/21 GCT GCT GCT GAT GCT GCT GCA
129652 TAT * 7 19/21 TAT TAT TAT TAT TAT TAT TTG
157499 TTG * 7 19/21 TTG TTG CTG TTC TTG TTG TTG
159991 GCT * 7 19/21 GCT GCT GCA GTT GCT GCT GCT
177546 CAG * 9 25/27 CAG CAG CAA CAG CAG CAG CAG CAA CAG
245314 GCA * 11 30/33 GCA GCA GCA GCA GCA ACA GCA ACA GCA GCA ACA
245410 GCA * 8 22/24 GCA ACA GCA GCA ACA GCA GCA GCA
245530 CAA * 7 19/21 CAA CAG CAA CAA CAA CAA CAG
245675 GCC * 7 19/21 GCC GCC GCT GCC GCC GCC GGC
261812 CGG * 7 19/21 CGG CGG CGG CGG CAT CGG CGG
262038 GCA * 8 22/24 GCA GCA GCA TCA GCA GCA GCA GGA
285729 GTT * 11 30/33 GTT GCT GTT GTT GTT GTT GTT GTT ATT ATT GTT
286196 CTG * 7 19/21 CTG CTG CGT CTG CTG CTG CTG
308255 GAG * 7 19/21 GAG GAG GAG GAG AAG GAA GAG
-----------------------------------------------------------------------------------------
Total sequence length......................... 309357
Total number of repeats detected.............. 17
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
TAT 2 1 1 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 3 2 1 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CGG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 2 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 1 CAA + 1 GTT + 1 TTG + 0 TGT = 3
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 1
0 AGC + 3 GCA + 1 CAG + 2 GCT + 1 CTG + 1 TGC = 8
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 1 TGG = 1
0 GGC + 0 GCG + 1 CGG + 1 GCC + 0 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298812|gb|AE003672.1|AE003672 Drosophila melanogaster genomic scaffold 142000013386040 section 2 of 5, complete sequence
Position Repeat Coverage Repeat
48768 ATA * 7 21/21 ATA ATA ATA ATA ATA ATA ATA
79262 CGC * 7 19/21 CGC CGC CGC CGC CGC TGC AGC
86480 GCC * 10 28/30 GCC GCC GCT GCC GCC GCC GCC GCC GCT GCC
104920 GCT * 8 22/24 GCT GCT GCT GCT GCG GCC GCT GCT
110628 GCA * 18 49/54 GCA GCA GCA GCA GCA ACA GCA GCA GCA GCA GCA TCA CCA GCA GCA GCA ACA CCA
112487 GCA * 8 22/24 GCA CCA GCA GCA GCA GCA GCA ACA
112515 CAG * 18 49/54 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAA CAG CAG CAG CAG CAG GCG CAC CAC
112614 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CAA
154286 TTG * 7 19/21 TTG TTG CTG TTG TTG TTT TTG
191994 GCT * 7 19/21 GCT GCT GCT GTT GCT GCT GGT
192032 TGC * 10 27/30 TGC TGC TGG TGC TGC TGG TGC TGC TGC TGT
193420 TGC * 7 19/21 TGC AGC TGC TGT TGC TGC TGC
207522 CTG * 8 22/24 CTG GTG CTG CTG CTG CTC CTG CTG
207549 CTG * 8 22/24 CTG CTG CTG ATG CTG CTG CTG TTG
212743 CCT * 7 19/21 CCT CCT CCT CCT CAT CCT TCT
214401 TCA * 7 19/21 TCA TCA TTA TCA TCA TCA CCA
247988 CCT * 7 19/21 CCT CCT CCT TCT CCT GCT CCT
264979 TTA * 7 19/21 TTA TTA TTA TTA TTA TAA TAA
288129 CAG * 7 19/21 CAG CAA CAA CAG CAG CAG CAG
290552 ACA * 8 22/24 ACA ACA ACA ACC TCA ACA ACA ACA
291160 GCA * 7 20/21 GCA GCA GCA GCA GCA GCA TCA
291205 GCA * 9 25/27 GCA GCA ACA GCA GCA GCA GCA GCA ACA
-----------------------------------------------------------------------------------------
Total sequence length......................... 301601
Total number of repeats detected.............. 22
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 1 1 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 4 3 0 0 1 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCC 1 0 1 0 0 0 0 0 0 0 0 0 0
CAG 3 2 0 0 1 0 0 0 0 0 0 0 0
CTG 2 2 0 0 0 0 0 0 0 0 0 0 0
CGC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 0 CAA + 0 GTT + 1 TTG + 0 TGT = 2
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 1 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 2 CCT + 0 CTC + 0 TCC = 2
0 AGC + 4 GCA + 3 CAG + 2 GCT + 2 CTG + 2 TGC = 13
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 1 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298787|gb|AE003671.1|AE003671 Drosophila melanogaster genomic scaffold 142000013386040 section 1 of 5, complete sequence
Position Repeat Coverage Repeat
84603 GCT * 7 20/21 GCT GCT GCT GCT GCT TCT GCT
115779 CTG * 10 27/30 CTG CTG CTG CTG CTG CTG CTG CCG CCG CCG
123434 CAG * 12 33/36 CAG CAG CAG CAG CAA CAG CAA CAG CAG CAG CAG CAA
123614 CAG * 7 19/21 CAG CAA CAG CAT CAG CAG CAG
123641 CAG * 11 30/33 CAG CAG CAG CAG CAG CAG CAA CAG CAG CAA CAT
248139 CTG * 7 19/21 CTG CTG CTG CTC CTG CTG ATG
255681 GTC * 8 22/24 GTC GTT GTC GTC GTC GTT GTC GTC
265181 ACC * 7 20/21 ACC ACG ACC ACC ACC ACC ACC
272164 CAG * 9 25/27 CAG CAA CAG CAG CAG CAG CAG CAA CAG
280346 GCT * 10 27/30 GCT GCT GCT GTT GCT GCT GCT GCT GCT GGC
292060 TTA * 8 24/24 TTA TTA TTA TTA TTA TTA TTA TTA
-----------------------------------------------------------------------------------------
Total sequence length......................... 309023
Total number of repeats detected.............. 11
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
GTC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 2 1 1 0 0 0 0 0 0 0 0 0 0
CAG 4 2 2 0 0 0 0 0 0 0 0 0 0
CTG 2 1 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 4 CAG + 2 GCT + 2 CTG + 0 TGC = 8
0 ACG + 0 CGA + 0 GAC + 0 CGT + 1 GTC + 0 TCG = 1
1 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7316093|gb|AE002708.1|AE002708 Drosophila melanogaster genomic scaffold 142000013386035, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7302106|gb|AE003780.1|AE003780 Drosophila melanogaster genomic scaffold 142000013386035 section 105 of 105, complete sequence
Position Repeat Coverage Repeat
24513 AAT * 7 19/21 AAT AAT AAT TAT TAT AAT AAT
37058 CAG * 7 19/21 CAG AAG TAG CAG CAG CAG CAG
109281 ACA * 7 19/21 ACA AAA ACA ACG ACA ACA ACA
172366 CAT * 7 19/21 CAT CAT CAT CAT CAT CAG CAG
-----------------------------------------------------------------------------------------
Total sequence length......................... 249284
Total number of repeats detected.............. 4
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 1 CAG + 0 GCT + 0 CTG + 0 TGC = 1
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7302062|gb|AE003779.1|AE003779 Drosophila melanogaster genomic scaffold 142000013386035 section 104 of 105, complete sequence
Position Repeat Coverage Repeat
22507 CAG * 7 19/21 CAG CAG CAG CCG CAG CAG CAA
22894 GCA * 11 30/33 GCA ACA ACA GCA GCA GCA GCA GCA GCA GCA ACA
22931 CAG * 8 22/24 CAG CAG CAG CAG CAA CAG CAG CAA
40752 TGC * 7 19/21 TGC TTC TGC TGC TTC TGC TGC
43960 GCT * 8 22/24 GCT ACT GCT GCT GCT GCT GTT GCT
56985 TCA * 7 19/21 TCA TGA TCA TAA TCA TCA TCA
62280 GCA * 14 40/42 GCA ACA GCA GCA GCA GTA GCA GCA GCA GCA GCA GCA GCA GCA
70057 GCA * 7 19/21 GCA GCA GCA GCC GCA ACA GCA
70489 GCA * 12 33/36 GCA GCA ACA GCA GCA GCA GCA CCA GCA GCA GCA TCA
70532 CAG * 7 20/21 CAG CAG CAG CAG CAA CAG CAG
70556 CAG * 8 22/24 CAG CAG CAG CAG CAC CAG CAG CTG
70696 GCC * 7 19/21 GCC TCC TCC GCC GCC GCC GCC
133459 ACA * 8 22/24 ACA ACA ACA ACA ACA GCA GCA ACA
167468 TGG * 10 27/30 TGG TGG TGG TGG TGG TGG TGG TGG TGG ACA
173547 CCA * 7 19/21 CCA CCA CCG CCT CCA CCA CCA
173681 GCC * 8 22/24 GCC GCC GCC GCC ACC ACC GCC GCC
198239 AGC * 8 22/24 AGC AGC AAC AAC AGC AGC AGC AGC
208520 CAA * 7 19/21 CAA CGG CAA CAA CAA CAA CAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 232064
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 4 1 2 1 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCC 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 4 4 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 1 CAA + 0 GTT + 0 TTG + 0 TGT = 2
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 1 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 4 GCA + 4 CAG + 1 GCT + 0 CTG + 1 TGC = 11
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 1 CCA + 0 CAC + 0 GGT + 0 GTG + 1 TGG = 2
0 GGC + 0 GCG + 0 CGG + 2 GCC + 0 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7302043|gb|AE003778.1|AE003778 Drosophila melanogaster genomic scaffold 142000013386035 section 103 of 105, complete sequence
Position Repeat Coverage Repeat
2783 GCA * 9 25/27 GCA GGT GCA GCA GCA GCA GCA GCA GCA
5773 GCA * 22 60/66 GCA GCA ACA GCA GCA GCA GCA GCA ACA GCA GCA GCA ACA GCA GCA GCA GCA ACA GCA ACA CCA GCA
10848 GTT * 7 19/21 GTT GTT GTT GTT GGT GTT TTT
55592 ATC * 21 59/63 ATC ATC ATC ATC CGC ATC ATC ATC ATC ATC ATT ATC ATC ATC ATC ATC ATC ATC ATC AGC ATC
66771 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG GAG
86850 TGC * 7 19/21 TGC CGC TGC CGC TGC TGC TGC
88866 CAA * 8 22/24 CAA CAA CAT CAA CAA CAG CAA CAA
126191 CCT * 8 22/24 CCT CCT CCT GCT CCC CCT CCT CCT
155894 GAG * 8 22/24 GAG GAG GAG GGG GAG CAG GAG GAG
164531 GCC * 7 19/21 GCC GCC GCC GCC GCC GCC GGT
164729 ACA * 7 19/21 ACA CCA ACA ACA AGA ACA ACA
183064 GCA * 10 28/30 GCA GCA GCA GCA GCA GCA GCA ACT GCA GCA
192833 CAC * 7 19/21 CAC CAG CAG CAC CAC CAC CAC
198580 ATG * 8 22/24 ATG ATG ATG ATG ATG ATG ACG ACG
212578 GTT * 8 22/24 GTT GTT GTT ATT GCT GTT GTT GTT
-----------------------------------------------------------------------------------------
Total sequence length......................... 225108
Total number of repeats detected.............. 15
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 0 0 0 0 1 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCA 3 1 1 0 0 0 1 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 1 CAA + 2 GTT + 0 TTG + 0 TGT = 4
1 ATG + 0 TGA + 0 GAT + 0 CAT + 1 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 1 CCT + 0 CTC + 0 TCC = 2
0 AGC + 3 GCA + 1 CAG + 0 GCT + 0 CTG + 1 TGC = 5
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7302015|gb|AE003777.1|AE003777 Drosophila melanogaster genomic scaffold 142000013386035 section 102 of 105, complete sequence
Position Repeat Coverage Repeat
13555 GAT * 7 19/21 GAT GTT GAT GAT GAT GAT GAG
38918 AGG * 7 20/21 AGG AGG AGG AGG AGG AGG AGC
55174 AAG * 7 20/21 AAG AAG AAG AAG AAG AAG GAG
84507 TTG * 7 19/21 TTG TTC TGG TTG TTG TTG TTG
94651 GCA * 9 25/27 GCA GCC GCA ACA GCA GCA GCA GCA GCA
95126 CAG * 17 47/51 CAG CAG CAG CAG CAG CAG CAA CAG CAG CAG CAA CAG CAA CTG CAG CAG CAG
101547 GTG * 7 19/21 GTG GTG GTG GTG GTG ATG GTA
104779 TAT * 8 23/24 TAT TAT TAT TAA TAT TAT TAT TAT
111329 CAT * 10 27/30 CAT CAT CAT CAG CAT CAT GAT CAT CAT CTT
129568 AGT * 10 28/30 AGT ATT AGA AGT AGT AGT AGT AGT AGT AGT
143412 AAT * 7 20/21 AAT AAT AAT AAA AAT AAT AAT
177432 ATG * 8 22/24 ATG ATG ATG ATG ATG ATG ATG AGC
180247 CTG * 10 28/30 CTG CTG ATG CTG CTG CTG CTG CTG CTT CTG
206224 GCT * 7 19/21 GCT TCT GCT GCT GCT GCA GCT
207479 ATG * 9 25/27 ATG ATG ATG ATG ATG GTG ATG ACG ATG
207993 CAT * 10 27/30 CAT CAT CAT CAT CAT CAT CAT CAT CGT GCT
228603 GCA * 7 19/21 GCA GCA GCA GCG GCA GCA GAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 232000
Total number of repeats detected.............. 17
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 2 2 0 0 0 0 0 0 0 0 0 0 0
AGT 1 0 1 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 2 0 2 0 0 0 0 0 0 0 0 0 0
CAG 1 0 0 0 1 0 0 0 0 0 0 0 0
CTG 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 2
1 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 1
0 AAC + 0 ACA + 0 CAA + 0 GTT + 1 TTG + 0 TGT = 1
2 ATG + 0 TGA + 1 GAT + 2 CAT + 0 ATC + 0 TCA = 5
1 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 1
1 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 1
0 AGC + 2 GCA + 1 CAG + 1 GCT + 1 CTG + 0 TGC = 5
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 1 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7301994|gb|AE003776.1|AE003776 Drosophila melanogaster genomic scaffold 142000013386035 section 101 of 105, complete sequence
Position Repeat Coverage Repeat
9458 CAC * 7 19/21 CAC CAC CAC CAC CAC CAG CAG
23311 CAA * 8 22/24 CAA CAG CAG CAA CAA CAA CAA CAA
38989 TTG * 7 19/21 TTG TTG CTG CTG TTG TTG TTG
118645 CTG * 8 22/24 CTG CTT CTG CTT CTG CTG CTG CTG
137083 AAT * 7 19/21 AAT AAT AAC AAT AAC AAT AAT
139530 AGC * 8 22/24 AGC AGC AGC AGC AGC AGC AAC AAC
176421 GCA * 8 22/24 GCA GCA GCA GGA GCA GCA GCA CCA
194580 ATT * 8 22/24 ATT ATT ATT ATT ATT ATT ATG ATG
-----------------------------------------------------------------------------------------
Total sequence length......................... 225879
Total number of repeats detected.............. 8
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 1 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 1 CAA + 0 GTT + 1 TTG + 0 TGT = 2
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 1 GCA + 0 CAG + 0 GCT + 1 CTG + 0 TGC = 3
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7301969|gb|AE003775.1|AE003775 Drosophila melanogaster genomic scaffold 142000013386035 section 100 of 105, complete sequence
Position Repeat Coverage Repeat
657 TGC * 7 19/21 TGC TGC CGC TGC TGC TGC TGT
90278 GAT * 7 19/21 GAT GAG GCT GAT GAT GAT GAT
92592 CAC * 10 28/30 CAC CAG CAG CAC CAC CAC CAC CAC CAC CAC
103783 CAG * 11 30/33 CAG CAG CAG CAA CTG CAG CAG CAG CAG CAG CAT
107391 CAT * 7 21/21 CAT CAT CAT CAT CAT CAT CAT
113941 AGC * 7 19/21 AGC AGC AAA AGC AGC AGC AGC
115748 CAG * 12 33/36 CAG CAG CAG CAC CAG CAG CAG CAG CAA CAG CAT CAG
115945 GCC * 7 20/21 GCC GCC GCC GCC GCC ACC GCC
122313 TGT * 7 19/21 TGT TGT TGT TGT TGT TGC TCT
122477 TGC * 10 28/30 TGC TGT TGC TGC TGC TGC TGC TGC TGT TGC
122524 CTG * 8 22/24 CTG TTG TTG CTG CTG CTG CTG CTG
122675 TGC * 7 19/21 TGC TGG TGC TGA TGC TGC TGC
129691 ATT * 8 23/24 ATT ATT ATT ATT TTT ATT ATT ATT
133877 TAG * 11 31/33 TAG TAG CAG TAG TAG TAG TAG TAA TAG TAG TAG
137982 GTT * 7 19/21 GTT GTT GTG GTT GTT GTA GTT
147273 GCA * 7 19/21 GCA ACT GCA GCA GCA GCA GCA
170124 GGT * 10 27/30 GGT GCA GGT GGT GGT GGT GGT GGT GGT GGC
204583 TGC * 7 20/21 TGC TGC TGC TGC TGC TGC TGG
207075 CTG * 7 19/21 CTG CTG CTG CTG TTG CTG TTG
207098 GCT * 7 19/21 GCT GCT GCT GCT GCT GCT GGG
207587 CTG * 8 22/24 CTG TTG CTG CTG CTG CTG TTG CTG
207618 TGC * 7 19/21 TGC TGT TGC TGT TGC TGC TGC
207696 TGC * 11 30/33 TGC TGC TGC TGC TGT TGG TGC TGC TGC TGT TGC
207735 TGC * 8 22/24 TGC TGC GGC TGC TGC TGC TGC TGG
209033 TGC * 22 62/66 TGC TGC TGC TGC TGT TGT TGC TGC TGC TGC TGC TGT TGC TGC TGC TGC TGC TGC TGT TGC TGC TGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 236109
Total number of repeats detected.............. 25
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAG 1 0 1 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 8 5 2 0 0 0 1 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 0 2 0 0 0 0 0 0 0 0 0 0
CAC 1 0 1 0 0 0 0 0 0 0 0 0 0
CTG 3 3 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 1 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 1 GTT + 0 TTG + 1 TGT = 2
0 ATG + 0 TGA + 1 GAT + 1 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 1 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 1 GCA + 2 CAG + 1 GCT + 3 CTG + 8 TGC = 16
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 1 CAC + 1 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7301938|gb|AE003774.1|AE003774 Drosophila melanogaster genomic scaffold 142000013386035 section 99 of 105, complete sequence
Position Repeat Coverage Repeat
30356 ATT * 11 30/33 ATT GTT ATT ATT ATT ATT ATT GTT ATT GTT ATT
45398 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAA CAC
97404 AGT * 7 20/21 AGT AGT AGT AGT AGA AGT AGT
116968 GGA * 7 19/21 GGA GGT GGA GGA GCA GGA GGA
116990 ACC * 8 22/24 ACC ACC ACC ACC ACC ACG ACG ACC
193067 ATA * 7 19/21 ATA ATA ATA ATA TTA ATA ATG
220738 TGC * 8 22/24 TGC TGC TGC TGC TGC TCC TGC TCC
231756 TAT * 7 19/21 TAT TAT TAT TAT TAT TAT ATT
234334 GGA * 7 19/21 GGA GAA GGA GGC GGA GGA GGA
234607 TTG * 7 20/21 TTG TTG TTG TTG TTG TTG TTT
-----------------------------------------------------------------------------------------
Total sequence length......................... 239003
Total number of repeats detected.............. 10
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 1 0 1 0 0 0 0 0 0 0 0 0 0
AGT 1 1 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 1 ATT + 0 TTA + 1 TAT = 3
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 1 TTG + 0 TGT = 1
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
1 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 2 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 2
0 AGC + 0 GCA + 1 CAG + 0 GCT + 0 CTG + 1 TGC = 2
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
1 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7301915|gb|AE003773.1|AE003773 Drosophila melanogaster genomic scaffold 142000013386035 section 98 of 105, complete sequence
Position Repeat Coverage Repeat
74206 CAG * 7 19/21 CAG CAG CAG CAC CAG CAA CAG
74788 AAC * 8 22/24 AAC CGC AAC AAC AAC AAC AAC AAC
75184 CAG * 8 23/24 CAG CAG CAG CAG CAA CAG CAG CAG
75298 CAG * 10 27/30 CAG CAG CAG CAG CAG CAG CAG CTG CAA CAA
91597 TGC * 7 20/21 TGC TGC TGC TGC TGC TGC TTC
99706 ATT * 7 19/21 ATT ATT ATT ATT ATT TTT GTT
111057 TCA * 22 60/66 TCA TTA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCG TGT CGA
133245 CAG * 7 19/21 CAG CAG CAG CAG CAG CGG CAA
133570 AAT * 7 19/21 AAT AAT AAG AAT AAG AAT AAT
134799 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CAA
154189 GCT * 12 33/36 GCT GCC GCT GCT GCT GCC GCT GCT GCT GCT GCT GCA
155923 GCA * 11 30/33 GCA GCA GCA ACA GCA GCA GCA GCA GCA GCA ACC
156014 CAG * 9 25/27 CAG CAG CAG CAG CAG CAG CAA CAT CAG
156134 CAG * 11 30/33 CAG CAG CAG CAG CAC CAA CAG CAG CAG CAA CAG
156266 AGC * 8 23/24 AGC AGC AGC AGC AGC AGC AGC AGT
192544 AGC * 7 19/21 AGC AGC AAC AAC AGC AGC AGC
192600 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 226905
Total number of repeats detected.............. 17
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 1 0 0 0 0 0 1 0 0 0 0 0 0
GCA 1 0 1 0 0 0 0 0 0 0 0 0 0
GCT 1 0 1 0 0 0 0 0 0 0 0 0 0
CAG 8 6 2 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 1 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 1 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
2 AGC + 1 GCA + 8 CAG + 1 GCT + 0 CTG + 1 TGC = 13
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7301871|gb|AE003772.1|AE003772 Drosophila melanogaster genomic scaffold 142000013386035 section 97 of 105, complete sequence
Position Repeat Coverage Repeat
13722 TCA * 7 19/21 TCA TCA TCA TCA TCT GCA TCA
13949 CAG * 10 27/30 CAG CAG CAG CAG CAA CAG CAG CAG CAG GTG
33456 GGA * 7 19/21 GGA GGA GGA TGA CGA GGA GGA
67521 GGA * 8 22/24 GGA CGA GGA GGA GGA GGA GGA CGA
82133 ACA * 7 19/21 ACA ATA ACA ACG ACA ACA ACA
82594 CCT * 7 20/21 CCT CCG CCT CCT CCT CCT CCT
84585 TGT * 10 27/30 TGT TGT TAT TGT TGT TGT TGT TGT TGT TTC
103980 GCT * 8 22/24 GCT GCT GCT GCT GCT GCT GCT TTT
117468 TCA * 13 36/39 TCA TCA TCA TCA TCA TCA TCA TCA TCA TTA CCA TCA TCT
133228 CAG * 11 30/33 CAG CAG CAG CAG CAG CAA CAA CAG CAG CAG CAT
133715 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CCG CAA
133963 GCA * 7 19/21 GCA GCA ACA TCA GCA GCA GCA
134054 CAG * 7 19/21 CAG CAG CAG CGT CAG CAG CAG
134081 CAG * 10 28/30 CAG CAG CAA CAG CAG CAG CAG CAA CAG CAG
135402 CAG * 12 34/36 CAG CAG CAA CTG CAG CAG CAG CAG CAG CAG CAG CAG
135494 GCA * 12 33/36 GCA ACA GCA GCA GCA GCA GCA GCA ACA GCA ACA GCA
225211 ATT * 7 19/21 ATT AAT ATT ATT ATT ATT ATA
-----------------------------------------------------------------------------------------
Total sequence length......................... 228448
Total number of repeats detected.............. 17
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 0 1 0 0 0 0 0 0 0 0 0 0
TCA 2 1 0 1 0 0 0 0 0 0 0 0 0
GGA 2 2 0 0 0 0 0 0 0 0 0 0 0
GCA 2 1 1 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 6 2 4 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 1 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 0 CAA + 0 GTT + 0 TTG + 1 TGT = 2
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 2 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 2 GGA + 0 GAG + 1 CCT + 0 CTC + 0 TCC = 3
0 AGC + 2 GCA + 6 CAG + 1 GCT + 0 CTG + 0 TGC = 9
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7301817|gb|AE003771.1|AE003771 Drosophila melanogaster genomic scaffold 142000013386035 section 96 of 105, complete sequence
Position Repeat Coverage Repeat
15779 GTT * 8 22/24 GTT GTT GCT GTT GTT GTT GCT GTT
18395 GAG * 7 19/21 GAG GAG GAG GAG CAG GCG GAG
18521 CAG * 7 19/21 CAG CAG CAG CTG CAG CAG CAC
28187 AGC * 7 20/21 AGC AGC AGC AGC AGC AGC AAC
33097 GCA * 8 22/24 GCA GCA GCA GCA GCA ACT GCA GCA
33130 GCA * 7 19/21 GCA GCA ACA TCA GCA GCA GCA
33152 CAG * 7 20/21 CAG CAG CAG CTG CAG CAG CAG
33355 GCA * 9 25/27 GCA ACA GCC GCA GCA GCA GCA GCA GCA
33418 GCA * 7 20/21 GCA ACA GCA GCA GCA GCA GCA
33491 CAG * 7 20/21 CAG CAG CAG CAG CAG CAG CAA
33595 GCA * 7 19/21 GCA GCA GCA GCA ACA GCA TCA
56290 CAG * 12 33/36 CAG CAG CAG CAG CAG CAG CAG CAG CAT CAT CTG CAG
56343 GCA * 8 23/24 GCA GCA GCA GCA GCA GCA ACA GCA
56587 CAG * 8 22/24 CAG CAA CAG CAG CAG CAG CAG CAA
56650 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CAT
108951 TAT * 8 22/24 TAT TAT TAG TAT TAT TAT TAT TAA
146558 CAG * 9 25/27 CAG CGG CAT CAG CAG CAG CAG CAG CAG
168830 CAA * 7 19/21 CAA CAA CAA CAG GAA CAA CAA
216747 TAA * 7 19/21 TAA TAA TAA TAA TAA TCA TTA
220635 GCT * 10 27/30 GCT GCT GCT GGT GCT GCT GCT GCT GAT GTT
-----------------------------------------------------------------------------------------
Total sequence length......................... 235127
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 6 6 0 0 0 0 0 0 0 0 0 0 0
GCT 1 0 1 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 7 6 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 0 ATT + 0 TTA + 1 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 1 CAA + 1 GTT + 0 TTG + 0 TGT = 2
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 1
1 AGC + 6 GCA + 7 CAG + 1 GCT + 0 CTG + 0 TGC = 15
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7301790|gb|AE003770.1|AE003770 Drosophila melanogaster genomic scaffold 142000013386035 section 95 of 105, complete sequence
Position Repeat Coverage Repeat
39109 GCC * 8 22/24 GCC GCC GCC ACC GCC ACC GCC GCC
42244 ATG * 7 20/21 ATG ATG ATG ATG ATG CTG ATG
47242 CAG * 7 19/21 CAG CAA CAC CAG CAG CAG CAG
48947 TGA * 8 23/24 TGA TGA TGA TGA TGA TGA TGA TGG
52072 GCT * 8 22/24 GCT GTT GTT GCT GCT GCT GCT GCT
52239 GCA * 7 19/21 GCA GCA GCA ACA GCA ACA GCA
54035 GGA * 10 27/30 GGA AGA AGA GGA GGA GGA GGA GGA GGA GGG
60539 TTG * 10 28/30 TTG TTG TAG TTG TTG TTG TTG CTG TTG TTG
65385 AAC * 10 28/30 AAC AAC AAC AAC AAC AAC AAC AAC AGC AAG
71659 GCG * 7 19/21 GCG GCG GCG ACG GCG GCG GGG
79410 GTT * 14 38/42 GTT GTT ATT GTT GTT GTT GTT GTT GTT GCT GTG GTT GTT GTA
123783 ACA * 8 22/24 ACA ACA ACA ACA ACA GCA AGA ACA
131355 CCT * 8 22/24 CCT CCT CCT CCG CCA CCT CCT CCT
182261 CAC * 11 31/33 CAC CAC CAC CAC CAC CAC CAC CAC CAC TAC CAT
183773 CAG * 8 22/24 CAG CAG TCG CAG CAG CAG CAG CAG
186040 CAG * 12 33/36 CAG CAG CAG CAA CAG CAG CAG CAG CAG CAG CAG AAC
186094 CAG * 11 31/33 CAG CAA CAG CAG CAG CAG CAG CAA CAG CAG CAG
208702 CAC * 10 27/30 CAC CAC CAA CAC CAC CAC CAC CAC CGC CGC
218518 AAC * 8 22/24 AAC AAC AAT AAC AGC AAC AAC AAC
218542 AAT * 9 25/27 AAT AAT AAT AAT AAT AGT AAT AAC AAT
-----------------------------------------------------------------------------------------
Total sequence length......................... 224100
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 2 1 1 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 0 1 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 0 0 1 0 0 0 0 0 0 0 0 0
GGA 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 4 2 2 0 0 0 0 0 0 0 0 0 0
CAC 2 0 2 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
2 AAC + 1 ACA + 0 CAA + 1 GTT + 1 TTG + 0 TGT = 5
1 ATG + 1 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 0 GAG + 1 CCT + 0 CTC + 0 TCC = 2
0 AGC + 1 GCA + 4 CAG + 1 GCT + 0 CTG + 0 TGC = 6
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 2 CAC + 0 GGT + 0 GTG + 0 TGG = 2
0 GGC + 1 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7301774|gb|AE003769.1|AE003769 Drosophila melanogaster genomic scaffold 142000013386035 section 94 of 105, complete sequence
Position Repeat Coverage Repeat
13512 ATA * 7 19/21 ATA ATA GTA ATA ATA ATA AAA
54020 AGG * 10 28/30 AGG AGG AGG AGG AGG AGG AGG AGG AGG GGC
63275 TTG * 10 27/30 TTG TTG TTG TCG TTG TTG TTG TTG TTG TGC
63757 TTG * 8 24/24 TTG TTG TTG TTG TTG TTG TTG TTG
64881 TGC * 8 23/24 TGC TGC TGC TGC TGC TGC TGC TGG
71788 TTG * 10 27/30 TTG TTG TTG TTG TTG TTG TTG TTG TTA TGA
75528 TGT * 10 28/30 TGT TGT TGT TGT TGT TGT TGT TCT TGT TAT
77781 GTT * 7 19/21 GTT GTT GTT GTG GTT GCT GTT
94832 CTT * 7 19/21 CTT CTT CTT CTG CGT CTT CTT
94857 TTG * 11 30/33 TTG TTG TTG CTG TTG TTG TTG ATG TTG TTG TAG
109393 GCA * 8 22/24 GCA GCA GCA GAA TCA GCA GCA GCA
114218 TCA * 7 19/21 TCA TCA TCA TCA TCA TTA TCG
116484 GAG * 7 19/21 GAG GAG GAG GAG TAG GTG GAG
130756 TGC * 7 19/21 TGC TGC CGT TGC TGC TGC TGC
155168 TGC * 9 25/27 TGC TGC TGC TGC TGC TGC TGC TGC AGA
175147 TCA * 8 23/24 TCA TCA TCA TCA TCA ACA TCA TCA
208190 CAG * 17 48/51 CAG CAG CAG CAG CAG CAG CAA CAG CAG CAG CAG CAG CAG CAG CAA CAA CAG
214995 TTC * 7 19/21 TTC TAC TGC TTC TTC TTC TTC
-----------------------------------------------------------------------------------------
Total sequence length......................... 234161
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 1 0 1 0 0 0 0 0 0 0 0 0 0
TTG 4 1 3 0 0 0 0 0 0 0 0 0 0
TTC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 3 3 0 0 0 0 0 0 0 0 0 0 0
TCA 2 2 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 0 0 0 1 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 1 CTT + 1 TTC + 0 TCT = 2
0 AAC + 0 ACA + 0 CAA + 1 GTT + 4 TTG + 1 TGT = 6
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 2 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 2
0 AGC + 1 GCA + 1 CAG + 0 GCT + 0 CTG + 3 TGC = 5
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7301730|gb|AE003768.1|AE003768 Drosophila melanogaster genomic scaffold 142000013386035 section 93 of 105, complete sequence
Position Repeat Coverage Repeat
4607 CTT * 7 19/21 CTT CTT CTT GGT CTT CTT CTT
25804 CGA * 7 19/21 CGA CGA CGA CGA TGA CTA CGA
50160 GTT * 12 33/36 GTT GTT GTT GTT GTT GTT GTT GTT GTT GTT GCT CTC
63061 AGG * 7 19/21 AGG AGG AGA ACG AGG AGG AGG
65283 CAG * 7 19/21 CAG CAG CAG CAG CAA CAA CAG
65495 GCA * 10 27/30 GCA GCA GCA GCA GCA GCA GCA TCA GCA GTT
65667 CAG * 8 23/24 CAG CAG CCG CAG CAG CAG CAG CAG
65769 CAG * 7 20/21 CAG CAG CAG CAA CAG CAG CAG
65994 CAA * 7 19/21 CAA CAG CAG CAA CAA CAA CAA
66818 GCA * 9 25/27 GCA GCA GCA GCA GCA ACA ACA GCA GCA
67188 GAC * 7 19/21 GAC GAT GAC GAC GAC GAG GAC
70102 GCA * 7 19/21 GCA GCC GCA GCA GCA GCA ACA
70676 CAA * 8 22/24 CAA CAA CAA CAA CAG CAG CAA CAA
70952 CAG * 8 22/24 CAG CAG CAA CAG CAG CAG CAG CCG
73425 CAG * 8 22/24 CAG CAG CAG CAA CAG CAC CAG CAG
142408 GTG * 10 28/30 GTG GTG GTG GTG GTG GTG GTG TTG GCG GTG
148802 TGC * 15 41/45 TGC TGC TGG TGC TGC TGG TGC TGC TGC TGC TGC TGC TGC TGT TGG
161902 TGC * 7 19/21 TGC TGC TGC TGC TGC TGC CTC
172240 GTT * 8 22/24 GTT GTT GTT GTT GTT GTT GTT TTC
172283 TGT * 7 19/21 TGT TGT TGT TGT TGT TGT TCC
178514 CCT * 7 19/21 CCT CCT CCT CCT GTT CCT CCT
180751 AAG * 8 22/24 AAG AAG AAG AAT AAG CAG AAG AAG
185798 AGC * 7 20/21 AGC AGC CGC AGC AGC AGC AGC
185828 CAG * 7 19/21 CAG GAA CAG CAG CAG CAG CAG
221075 TGG * 8 22/24 TGG TGG TGG TGG TGG CGT TGG TGG
231963 GTG * 8 22/24 GTG GTG GTG GTG GTG GTG GTG GCA
232025 GGT * 7 19/21 GGT GGT GAT GGT GGT GGT CGT
236605 CAG * 7 19/21 CAG GAG CAG GAG CAG CAG CAG
-----------------------------------------------------------------------------------------
Total sequence length......................... 242815
Total number of repeats detected.............. 28
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 1 0 1 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 2 1 1 0 0 0 0 0 0 0 0 0 0
GTG 2 1 1 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 3 2 1 0 0 0 0 0 0 0 0 0 0
CAA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 7 7 0 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CGA 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
1 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 2
0 AAC + 0 ACA + 2 CAA + 2 GTT + 0 TTG + 1 TGT = 5
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 0 GAG + 1 CCT + 0 CTC + 0 TCC = 2
1 AGC + 3 GCA + 7 CAG + 0 GCT + 0 CTG + 2 TGC = 13
0 ACG + 1 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 2
0 ACC + 0 CCA + 0 CAC + 1 GGT + 2 GTG + 1 TGG = 4
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7301701|gb|AE003767.1|AE003767 Drosophila melanogaster genomic scaffold 142000013386035 section 92 of 105, complete sequence
Position Repeat Coverage Repeat
1815 TGC * 8 22/24 TGC TGC CGC CGC TGC TGC TGC TGC
18312 TGG * 8 22/24 TGG TGG TGG CGG TGG TGG AGG TGG
28452 ATG * 8 23/24 ATG ATG ATG GTG ATG ATG ATG ATG
43918 GCA * 8 23/24 GCA GCA GCA ACA GCA GCA GCA GCA
44217 CAC * 7 19/21 CAC CAT CAC CAC CAC CAC CAG
52915 GCT * 8 22/24 GCT GCT GCT GCT GGT GGT GCT GCT
61908 CAT * 7 19/21 CAT CAT CAT CAT CAC CAG CAT
78811 CTG * 7 19/21 CTG CTG CTG CTG CTG CTG GAG
79276 GCG * 7 19/21 GCG GCG GCG GCG GCA GCG GTG
102429 AGC * 9 25/27 AGC AGC AGC AGC AGC AGC AGC AGC AAG
102518 GCA * 7 19/21 GCA GCA ACA GCA GCA GCA ACA
103065 CAG * 7 19/21 CAG CAA CAT CAG CAG CAG CAG
103421 GCA * 8 22/24 GCA ACA GCA ACA GCA GCA GCA GCA
105377 CAG * 7 19/21 CAG CAG CAG CAG CAG CAG CGT
105526 GCA * 7 19/21 GCA GCA GCA GCA GCA GCA ACG
111343 ATG * 7 20/21 ATG ATG ATG ATG ATG ATG TTG
120158 TTG * 7 19/21 TTG TTG TTG ATG TCG TTG TTG
123010 ACA * 7 19/21 ACA ACA ACA ACA ACA ATA ATA
141508 CAG * 7 19/21 CAG CCG CAG CAG TAG CAG CAG
151497 GCA * 7 19/21 GCA GCA GCA GCA AGA GCA GCA
152274 TTA * 8 22/24 TTA TTA TTA TTA TTA TTA CGA TTA
164665 GCT * 8 22/24 GCT GCT GCT TCT GTT GCT GCT GCT
167267 GAT * 8 22/24 GAT GAT GAT GAC GAT GAT GTT GAT
171214 TTG * 7 19/21 TTG TTG TTG TTG CTG TTG CTG
189688 AAC * 7 19/21 AAC AAA AAC AAC AAC AAC AGC
193327 AAC * 7 19/21 AAC AAC AAC AAC AAC AGC AGC
193521 CAA * 11 30/33 CAA CAA CAA CAA CAA CAT CAA CAA CAG CAA GAA
202978 CAT * 7 19/21 CAT CAC CAT CAT CAT CAT CAC
222574 CAG * 7 19/21 CAG CAG CAT CAG CAG CAG CAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 225155
Total number of repeats detected.............. 29
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 2 2 0 0 0 0 0 0 0 0 0 0 0
ATG 2 2 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 5 5 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 0 1 0 0 0 0 0 0 0 0 0 0
CAT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 4 4 0 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
2 AAC + 1 ACA + 1 CAA + 0 GTT + 2 TTG + 0 TGT = 6
2 ATG + 0 TGA + 1 GAT + 2 CAT + 0 ATC + 0 TCA = 5
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 5 GCA + 4 CAG + 2 GCT + 1 CTG + 1 TGC = 14
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 1 TGG = 2
0 GGC + 1 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7301683|gb|AE003766.1|AE003766 Drosophila melanogaster genomic scaffold 142000013386035 section 91 of 105, complete sequence
Position Repeat Coverage Repeat
13740 CTG * 7 19/21 CTG CTG TTG TTG CTG CTG CTG
13911 CTG * 8 22/24 CTG CTG CAT CTG CTG CTG CTG CTG
13940 GCT * 8 22/24 GCT GGT GCT GCT GCT GTT GCT GCT
15484 CCG * 7 19/21 CCG CCG CCG CCT CCA CCG CCG
16149 TGC * 8 22/24 TGC TGC TGC TTT TGC TGC TGC TGC
29280 TCA * 7 19/21 TCA TCA TCA TCA TCG TCT TCA
34111 CGG * 7 19/21 CGG TGG TGG CGG CGG CGG CGG
51052 CAT * 7 19/21 CAT CAT CAT CAT GAT CAT CGT
65446 GGT * 7 19/21 GGT GGT GAT AGT GGT GGT GGT
95250 CTG * 10 28/30 CTG CTG CTC CTG CTG CTG CTG CTG CTG TTG
96206 TAT * 8 23/24 TAT TAT TAT TAT TAT TGT TAT TAT
113837 CAT * 7 20/21 CAT CAT CAT AAT CAT CAT CAT
131927 AGC * 10 27/30 AGC AGC AGC AGC ATC AGC ATC AGC AGC AAC
132615 GAT * 12 33/36 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAC GAC GAC
134635 GTT * 8 22/24 GTT CCT GTT GTT GTT GTT GTT GTT
139631 CAG * 11 30/33 CAG CAG CAG CAG CAG CAG CAG AAG GAG CAA CAG
148354 CTG * 7 19/21 CTG CTG TTG CTG GTG CTG CTG
158492 CAG * 7 19/21 CAG CAG CTG CAG CAG TAG CAG
175978 CCT * 7 19/21 CCT CTT CCT CCT CAT CCT CCT
205546 TGA * 7 19/21 TGA TGA TGA TGA TAA TGA TGG
-----------------------------------------------------------------------------------------
Total sequence length......................... 225894
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGC 1 0 1 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 0 1 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 2 1 1 0 0 0 0 0 0 0 0 0 0
CTG 4 3 1 0 0 0 0 0 0 0 0 0 0
CGG 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 1 GTT + 0 TTG + 0 TGT = 1
0 ATG + 1 TGA + 1 GAT + 2 CAT + 0 ATC + 1 TCA = 5
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 1 CCT + 0 CTC + 0 TCC = 1
1 AGC + 0 GCA + 2 CAG + 1 GCT + 4 CTG + 1 TGC = 9
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 1 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 1 CGG + 0 GCC + 1 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7301668|gb|AE003765.1|AE003765 Drosophila melanogaster genomic scaffold 142000013386035 section 90 of 105, complete sequence
Position Repeat Coverage Repeat
4390 TGG * 7 19/21 TGG CGG TGG TGG TGG TGG TGT
12078 ACA * 8 22/24 ACA ACA ATA ACA ACA ACA ACA ACT
29437 TCC * 7 19/21 TCC TCC TCC TCC TCC TCT TCT
70121 GCT * 10 27/30 GCT GCT GCT GCT GCG GCT GCT GCT GCG ACT
108333 GCT * 7 19/21 GCT CCT GCT GCT TCT GCT GCT
109569 GCA * 7 19/21 GCA GCG GCA GCA GAA GCA GCA
117826 CAG * 7 19/21 CAG CAG AAG CAG CAT CAG CAG
128265 CAG * 9 25/27 CAG CAG GAG CAG CAG CAG CAG CAG CAT
132036 CAG * 8 22/24 CAG CAG CAA CAG GAG CAG CAG CAG
149241 AGA * 7 19/21 AGA AGA AGA AGA ACT AGA AGA
160399 CTG * 7 19/21 CTG GTG CTA CTG CTG CTG CTG
205012 TGC * 8 23/24 TGC TCC TGC TGC TGC TGC TGC TGC
205048 GAT * 8 22/24 GAT GAT GAT GGC GAT GAT GAT GAT
224478 GCA * 10 27/30 GCA GCA GCA GCA GCA GCA GGA GCA GGA GAA
229181 ACG * 8 22/24 ACG ACG ACG ACG ACG ACG ACG AGC
231560 GGT * 9 25/27 GGT GGT GGT GGC GGT GGT GGT GGT GGG
235239 GCT * 7 19/21 GCT GCT GCT GTT GCT GTT GCT
236263 TGC * 9 25/27 TGC TGC TGC TGC TAC TGC TGC TGT TGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 239098
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGA 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
ACG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1