Tri-Nucleotide Repeats in Genomic Sequences
Tri-Nucleotide Repeats in
Drosophila melanogaster Chromosome-Arm-3R Genomic Scaffolds
Genomic sequence
gi|7316099|gb|AE002681.1|AE002681 Drosophila melanogaster genomic scaffold 142000013386043, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7296880|gb|AE003607.1|AE003607 Drosophila melanogaster genomic scaffold 142000013386043 section 8 of 8, complete sequence
Position Repeat Coverage Repeat
11105 GAA * 8 22/24 GAA GGA GAA GAA GAA GAA GAA GGA
13626 CTG * 10 27/30 CTG CTG CTG CTG CAC CTG CTG CTG CTG GTG
-----------------------------------------------------------------------------------------
Total sequence length......................... 95401
Total number of repeats detected.............. 2
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 1 GAA + 0 CTT + 0 TTC + 0 TCT = 1
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 1 CTG + 0 TGC = 1
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7296839|gb|AE003606.1|AE003606 Drosophila melanogaster genomic scaffold 142000013386043 section 7 of 8, complete sequence
Position Repeat Coverage Repeat
5354 TAA * 7 19/21 TAA TTC TAA TAA TAA TAA TAA
26494 GTT * 11 30/33 GTT GTT GTA GTT GTT GTT GTT GTA GTT GGT GTT
26554 GTT * 7 19/21 GTT GTT GTA GTT GGT GTT GTT
26613 TGT * 11 30/33 TGT TGT TGT TGT TGT AGT TGT TGT AGT TGG TGT
26668 GTT * 8 22/24 GTT GTT GTA GTT TTT GTT GTT GTT
26700 TGT * 7 19/21 TGT TGT AGT TGC TGT TGT TGT
26757 TGT * 8 22/24 TGT TGT TGT AGT TGG TGT TGT TGT
30831 AGC * 10 28/30 AGC GAC AGC AGC AGC AGC AGC AGC AGC AGC
128238 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC TGT TGT
129652 GCT * 7 19/21 GCT GCT ACT GCT ACT GCT GCT
131081 TGC * 8 22/24 TGC TGC TGC TGT TGC TGT TGC TGC
140114 TGC * 7 19/21 TGC TGT TGC TGC TAC TGC TGC
194518 AGC * 7 19/21 AGC AGC AAC AAC AGC AGC AGC
194574 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CAA
269226 GTT * 8 22/24 GTT GAT GTT GTT GTT GAT GTT GTT
280407 TAG * 7 19/21 TAG TAG TAG TAG AAG AAG TAG
292532 TAT * 7 19/21 TAT TAT TAT TAT TAT TAT ATT
-----------------------------------------------------------------------------------------
Total sequence length......................... 300275
Total number of repeats detected.............. 17
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGC 2 1 1 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TAG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 3 2 1 0 0 0 0 0 0 0 0 0 0
TGC 3 3 0 0 0 0 0 0 0 0 0 0 0
GTT 4 3 1 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 0 ATT + 0 TTA + 1 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 4 GTT + 0 TTG + 3 TGT = 7
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 1 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
2 AGC + 0 GCA + 1 CAG + 1 GCT + 0 CTG + 3 TGC = 7
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7296808|gb|AE003605.1|AE003605 Drosophila melanogaster genomic scaffold 142000013386043 section 6 of 8, complete sequence
Position Repeat Coverage Repeat
6689 GTT * 7 19/21 GTT GTC GTC GTT GTT GTT GTT
42296 GAC * 7 19/21 GAC GAC GAG GAC GAC GAC GAA
43703 ATG * 8 22/24 ATG TTG TTG ATG ATG ATG ATG ATG
43853 CAA * 7 19/21 CAA CAG CAA CAA CAA AAA CAA
44795 CAG * 10 27/30 CAG CAG CGG CAG CAG CAG CAG CAG CGG CGG
45208 CAG * 10 27/30 CAG CAG CAG CAG CAC CAT CAG CAG CAG CAA
45354 GCA * 9 25/27 GCA ACA GCA GCA GCA GCA ACA GCA GCA
45397 CAG * 8 22/24 CAG CAT CAG CAG CAG CAG CAT CAG
45424 CAG * 14 39/42 CAG CAG CAG CAG CAT CAG CAG CAG CAG CAT CAG CAA CAG CAG
48756 AAT * 7 20/21 AAT AAC AAT AAT AAT AAT AAT
116238 GAA * 7 19/21 GAA GAA GAA GAA GCA GAA GTA
128312 TGT * 7 19/21 TGT GGC TGT TGT TGT TGT TGT
166150 CAT * 7 20/21 CAT CAT CAT CAT CAC CAT CAT
175273 CTC * 10 27/30 CTC CTC CTC CTC CTC CTC CTC CCC CTC CCT
176205 TGC * 7 19/21 TGC TGC TGC TGC TGC GTC TGC
185514 ATA * 27 73/81 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ACA TGT GAT AAA
220772 CTG * 7 19/21 CTG CTG CTG TTG CTG TTG CTG
255416 TAA * 11 30/33 TAA TAA TCA TAA TAA TAA TAA TTA TAA TTA TAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 274591
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 0 0 0 0 0 0 1 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 0 1 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 4 1 2 1 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 1 ATA + 1 TAA + 0 ATT + 0 TTA + 0 TAT = 3
0 AAG + 0 AGA + 1 GAA + 0 CTT + 0 TTC + 0 TCT = 1
0 AAC + 0 ACA + 1 CAA + 1 GTT + 0 TTG + 1 TGT = 3
1 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 1
0 AGC + 1 GCA + 4 CAG + 0 GCT + 1 CTG + 1 TGC = 7
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7296793|gb|AE003604.1|AE003604 Drosophila melanogaster genomic scaffold 142000013386043 section 5 of 8, complete sequence
Position Repeat Coverage Repeat
32647 GAC * 7 19/21 GAC GAC GAC AAC GAC GAT GAC
59660 GCA * 11 31/33 GCA GCA GCA ACA GCA GCA GCA ACA GCA GCA GCA
59780 GCA * 8 22/24 GCA ACA GCA GCA GCA GCA GCA ACA
59912 ACA * 11 30/33 ACA ACA ACA ACA ACA GCA ACA ACA GCA GCA ACA
59945 GCA * 7 19/21 GCA GCA GCA GCA GCA GCA GAC
60312 CAG * 7 19/21 CAG CAG CAG CAA CAA CAG CAG
60438 CAG * 13 36/39 CAG CAC CAG CAG CAG CAA CAG CAG CAG CAG CAG CAG CAA
60785 GCA * 8 22/24 GCA GCA GCA GCA GCC ACA GCA GCA
61122 GCC * 7 19/21 GCC GCC GCC GCT GCC GCC GGC
61732 AAC * 7 19/21 AAC TGC AAC AAC AAC AAC AAC
69567 TAT * 13 36/39 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAC GAG TAT TAT
84598 GTT * 7 19/21 GTT GTC GTT GTC GTT GTT GTT
123177 TTG * 7 19/21 TTG CTG TTG TTG CTG TTG TTG
127283 CAA * 7 19/21 CAA CAA CAA CAA CAA AAA CTA
173990 ATT * 7 20/21 ATT TTT ATT ATT ATT ATT ATT
201898 TGC * 7 19/21 TGC TGC TGT TGC TGC AGC TGC
217834 TCC * 7 20/21 TCC TCC TCC TCC TCC TCC CCC
275577 GGT * 7 20/21 GGT GGT GGT GGT GGT GAT GGT
275765 TGG * 8 22/24 TGG TGG TGA TGG GGG TGG TGG TGG
275911 CTG * 8 22/24 CTG CTG CTG GTG CTG CTG CTG TTG
275936 TGC * 8 22/24 TGC TGC TGC TGG TGC TGG TGC TGC
291426 CTG * 7 19/21 CTG TTG CTG TTG CTG CTG CTG
291487 TGC * 7 20/21 TGC TGC TGC TGT TGC TGC TGC
301657 CTG * 7 19/21 CTG CTC CTG CTC CTG CTG CTG
-----------------------------------------------------------------------------------------
Total sequence length......................... 302700
Total number of repeats detected.............. 24
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 0 1 0 0 0 0 0 0 0 0 0 0
TAT 1 0 0 1 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 3 3 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 4 3 1 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 1 0 1 0 0 0 0 0 0 0 0 0
CTG 3 3 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 1 ATT + 0 TTA + 1 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 1 ACA + 1 CAA + 1 GTT + 1 TTG + 0 TGT = 5
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 1 TCC = 1
0 AGC + 4 GCA + 2 CAG + 0 GCT + 3 CTG + 3 TGC = 12
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 1 GGT + 0 GTG + 1 TGG = 2
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7296751|gb|AE003603.1|AE003603 Drosophila melanogaster genomic scaffold 142000013386043 section 4 of 8, complete sequence
Position Repeat Coverage Repeat
3223 GCT * 7 19/21 GCT CCT GCG GCT GCT GCT GCT
16925 AGT * 7 19/21 AGT ACT AGT AGT ACT AGT AGT
23788 TGC * 9 26/27 TGC TGT TGC TGC TGC TGC TGC TGC TGC
34544 CAA * 9 25/27 CAA CAA CAA CAA CAA CAA CAA CAA GAG
85210 TTG * 7 19/21 TTG CTG TTG TTG TTG CTG TTG
105941 CAC * 13 36/39 CAC TAC CAA CAC CAC CAC CAC CAC CAC CAC CAC CAC CAA
125353 TCA * 8 23/24 TCA TCA CCA TCA TCA TCA TCA TCA
128437 TAT * 12 33/36 TAT TAT TAT TAT TAT TAT AAT TAT TAT TTT TAT TTT
145826 GCT * 7 19/21 GCT GCT GCT GCA GCT GCC GCT
148281 TTC * 7 19/21 TTC TTG TTT TTC TTC TTC TTC
153162 TGC * 10 29/30 TGC TGC TGC TGC TGC TGC TGC TGC TGC GGC
182740 CTG * 7 19/21 CTG CTG CCG CTG CTG CTG CTT
241017 AAT * 7 19/21 AAT AAA AAT AAC AAT AAT AAT
242547 TAG * 7 19/21 TAG AAA TAG TAG TAG TAG TAG
262684 TGA * 7 19/21 TGA TGA CGT TGA TGA TGA TGA
264431 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAA CAT
264523 GCA * 7 19/21 GCA GCA GCA GCT GCA GCA ACA
264790 GCA * 9 25/27 GCA ACA GCA GCA GCA GCA GCA ACA GCA
264974 CAG * 8 22/24 CAG CAA CAG CAA CAG CAG CAG CAG
290380 AAT * 8 23/24 AAT AAT AAT AAT AAT AAT AAT AAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 294507
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 2 2 0 0 0 0 0 0 0 0 0 0 0
AGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 0 1 0 0 0 0 0 0 0 0 0 0
TAG 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TTC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 1 1 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CAC 1 0 0 1 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
2 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 3
0 AAG + 0 AGA + 0 GAA + 0 CTT + 1 TTC + 0 TCT = 1
0 AAC + 0 ACA + 1 CAA + 0 GTT + 1 TTG + 0 TGT = 2
0 ATG + 1 TGA + 0 GAT + 0 CAT + 0 ATC + 1 TCA = 2
1 AGT + 0 GTA + 1 TAG + 0 ACT + 0 CTA + 0 TAC = 2
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 2 GCA + 2 CAG + 2 GCT + 1 CTG + 2 TGC = 9
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7296683|gb|AE003602.1|AE003602 Drosophila melanogaster genomic scaffold 142000013386043 section 3 of 8, complete sequence
Position Repeat Coverage Repeat
14987 TGA * 8 22/24 TGA TGA TGA TGA TGA TTA CGA TGA
21925 GCA * 8 22/24 GCA GCA GCA ACA GCA GCA GCA GCT
22000 GCA * 10 28/30 GCA GCA GCA ACA GCA GCA GCA GCA GGA GCA
22267 GCA * 7 20/21 GCA GCA GCA GCA GCA GCA ACA
24272 CAG * 11 31/33 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CCC
24820 GCG * 7 19/21 GCG GCG GCG GCA GCG GCG GCA
30695 CTC * 8 22/24 CTC CTG CTC CTC CTC GTC CTC CTC
44135 GTT * 8 22/24 GTT GTT TTT GTT GTT GTT GTT GAT
52048 AGG * 7 19/21 AGG AGG AGG AGC AGG AGG CGG
68496 TGC * 7 19/21 TGC TAC TGC TGC TGC TGC TGT
68520 TGT * 7 19/21 TGT TGT TGT TGT TGT TGT TAG
80992 AAG * 7 19/21 AAG AAG AAG AAG AAG AAG GAC
81249 GAA * 7 19/21 GAA GAA AAA GAA GCA GAA GAA
99014 CAC * 7 19/21 CAC CAC CAC CAC AAC CCC CAC
111159 TAA * 8 22/24 TAA TAA TAA TAA TAA TAA TAA AAT
128073 GCA * 10 27/30 GCA GCA GCA GCA ACA ACA GCA GCA GCA GCC
227172 TAC * 7 20/21 TAC TAC TAC TAC TAC TAT TAC
243612 CCT * 7 19/21 CCT CCT GCT CCT GCT CCT CCT
292969 TCC * 7 19/21 TCC TCC TCC TCA TCC TCA TCC
-----------------------------------------------------------------------------------------
Total sequence length......................... 297266
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 4 2 2 0 0 0 0 0 0 0 0 0 0
GCG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 0 1 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 0 ATT + 0 TTA + 0 TAT = 1
1 AAG + 0 AGA + 1 GAA + 0 CTT + 0 TTC + 0 TCT = 2
0 AAC + 0 ACA + 0 CAA + 1 GTT + 0 TTG + 1 TGT = 2
0 ATG + 1 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 1 TAC = 1
1 AGG + 0 GGA + 0 GAG + 1 CCT + 1 CTC + 1 TCC = 4
0 AGC + 4 GCA + 1 CAG + 0 GCT + 0 CTG + 1 TGC = 6
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 1 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7296642|gb|AE003601.1|AE003601 Drosophila melanogaster genomic scaffold 142000013386043 section 2 of 8, complete sequence
Position Repeat Coverage Repeat
7384 GGT * 11 30/33 GGT GGA GGT GGT GGT GGA GGT GGT GGT GGA GGT
40607 CGG * 8 22/24 CGG AGG AGG CGG CGG CGG CGG CGG
52257 TTA * 7 19/21 TTA TGA TTA TTA TTA TTA TTG
63928 TGC * 8 22/24 TGC TGC TGC TGC TGC GGC TGG TGC
124463 CAG * 8 23/24 CAG CAG CAG CAG CAG CAA CAG CAG
164072 GCA * 8 22/24 GCA GCA GCA GCA GCA GTT GCA GCA
164217 CAG * 7 19/21 CAG CAG CAC CAA CAG CAG CAG
164326 GCA * 7 19/21 GCA GTA GCA GCA GCA GCA GGA
164350 GCA * 7 19/21 GCA GAA GCA GCA GCA GCA ACA
168633 TGT * 10 27/30 TGT TGT TGT TGT TTT TGT TGT TTT TGT TGC
175603 GGA * 7 19/21 GGA GGA GGA GGC GGA GGA GGT
234259 TAT * 8 23/24 TAT TAT TAC TAT TAT TAT TAT TAT
239415 CTG * 8 22/24 CTG CTG CTG CTG CTG ATG GTG CTG
287124 TAT * 7 19/21 TAT TAT TAT TGT TGT TAT TAT
301106 AGC * 7 19/21 AGC AGC AGG ATC AGC AGC AGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 303626
Total number of repeats detected.............. 15
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 2 2 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 3 3 0 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CGG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 2 TAT = 3
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 1 TGT = 1
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 1
1 AGC + 3 GCA + 2 CAG + 0 GCT + 1 CTG + 1 TGC = 8
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 1 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 1 CGG + 0 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7296607|gb|AE003600.1|AE003600 Drosophila melanogaster genomic scaffold 142000013386043 section 1 of 8, complete sequence
Position Repeat Coverage Repeat
5043 ATT * 8 22/24 ATT ATT ATT ATT ATT ATT AAA ATT
13155 TGC * 7 19/21 TGC TGC TGC TGC GTC TGC TGC
20187 TTA * 8 23/24 TTA TTA TTA TTA TTA TTA TTT TTA
25616 TGT * 7 19/21 TGT TGT GGT TGT TGT AGT TGT
25922 TGT * 7 19/21 TGT TGT GGT TGT TGT AGT TGT
44848 CTG * 7 19/21 CTG CGG CTG CTG CTG CTG CTC
48997 GGT * 7 19/21 GGT GGT GGT GGT GGC GGT GGC
67216 CTT * 7 19/21 CTT CTT CTT TTT CTT TTT CTT
72646 CTT * 7 20/21 CTT CTT CTT CTC CTT CTT CTT
91415 AAT * 86 232/258 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT ATT AAT AAT ATT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT GAT AAT AAT AAT AAT AGT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAG AAT AAT AAT AAT AAT AAT AAA ATA AGT TTA AAG AGT AGT GCA TTT AAT TTT CAC CAG
103688 ATC * 7 19/21 ATC GTC ATT ATC ATC ATC ATC
108769 TAT * 7 19/21 TAT TAT TAT TAT TAT CGT TAT
139273 ATT * 8 22/24 ATT ATT ATT ATT ATT ATT ATT AAG
193636 AGC * 14 38/42 AGC AAC AGC AGC AGC AGC AGC AGC AGC AAA AGC AGC AGC GGC
199946 CTG * 8 22/24 CTG CTA CTC CTG CTG CTG CTG CTG
214180 TAT * 10 28/30 TAT ATT TAT TAT TAT TAT TAT TAT TAT TAT
226893 CCA * 8 22/24 CCA GCA CCA CCA CCA CCA TCA CCA
276829 AAG * 8 22/24 AAG AAA AAG AAG AAA AAG AAG AAG
-----------------------------------------------------------------------------------------
Total sequence length......................... 291545
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 0 0 0 0 0 0 0 0 0 0 0 1
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 2 2 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 0 0 1 0 0 0 0 0 0 0 0 0
TAT 2 1 1 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTT 2 2 0 0 0 0 0 0 0 0 0 0 0
CTG 2 2 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 2 ATT + 1 TTA + 2 TAT = 6
1 AAG + 0 AGA + 0 GAA + 2 CTT + 0 TTC + 0 TCT = 3
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 2 TGT = 2
0 ATG + 0 TGA + 0 GAT + 0 CAT + 1 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 0 GCA + 0 CAG + 0 GCT + 2 CTG + 1 TGC = 4
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 1 CCA + 0 CAC + 1 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7316097|gb|AE002699.1|AE002699 Drosophila melanogaster genomic scaffold 142000013386040, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7298913|gb|AE003675.1|AE003675 Drosophila melanogaster genomic scaffold 142000013386040 section 5 of 5, complete sequence
Position Repeat Coverage Repeat
33433 TGC * 7 19/21 TGC TGC TGC TGT TGG TGC TGC
37990 TGG * 12 33/36 TGG GGA TGG TGG TGG TGG TGG TGG TGG TGG TGT TGG
38026 TGC * 7 19/21 TGC TGC TGC TGC TGC TGT TGT
40058 CCG * 8 22/24 CCG CCG CCG CCG CTG CCG CCT CCG
53720 TAA * 7 19/21 TAA CAA TAA TAA TAA TAA TGA
88729 GGT * 13 36/39 GGT GGC GGT GGT GGT GGT GGC GGT GGT GGT GGT GGT GGA
120713 TTG * 7 19/21 TTG TGG TTG GTG TTG TTG TTG
120737 TTG * 8 22/24 TTG TTG TTG TTG TTC TTG TTG TTT
141793 ATG * 7 19/21 ATG GCG ATG ATG ATG ATG ATG
-----------------------------------------------------------------------------------------
Total sequence length......................... 145786
Total number of repeats detected.............. 9
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGG 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
GGT 1 0 0 1 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 2 TTG + 0 TGT = 2
1 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 2 TGC = 2
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 1 GGT + 0 GTG + 1 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 1 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298877|gb|AE003674.1|AE003674 Drosophila melanogaster genomic scaffold 142000013386040 section 4 of 5, complete sequence
Position Repeat Coverage Repeat
8389 ATT * 8 22/24 ATT ATT TTT AAT ATT ATT ATT ATT
50175 CAT * 8 22/24 CAT CAT CAT CAT CAT CAT CAT CGA
68174 CAG * 8 22/24 CAG CAG CAG CTG CCG CAG CAG CAG
68429 CAG * 7 19/21 CAG CAC CAC CAG CAG CAG CAG
85460 GCT * 8 22/24 GCT GCT GCT GCT GCT GCT GTT GGT
100035 GCA * 8 22/24 GCA GCT GCA GCA GCA GCA ACA GCA
100185 GCA * 8 22/24 GCA GCA GCA CCA GCA ACA GCA GCA
100828 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CCG
114141 ATC * 7 19/21 ATC GTC GTC ATC ATC ATC ATC
116022 AGC * 7 19/21 AGC CGC CGC AGC AGC AGC AGC
141631 CTG * 8 22/24 CTG CTG CTG CTG CCA CTG CTG CTG
168657 GCA * 7 19/21 GCA GCC GCA GCA GCA GCA ACA
168681 GCA * 7 19/21 GCA GCT GCA GCT GCA GCA GCA
199052 TCG * 7 19/21 TCG TCG CCG TCG ACG TCG TCG
218890 GAA * 7 19/21 GAA GAA GAA GAG GGA GAA GAA
254164 GCA * 7 21/21 GCA GCA GCA GCA GCA GCA GCA
271419 GGA * 9 25/27 GGA GGA GGA GGA GTA GGA GGA GGA GGC
276355 AGC * 7 19/21 AGC AGC AGC AGT AGC AGC AAC
-----------------------------------------------------------------------------------------
Total sequence length......................... 298028
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 5 5 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 3 3 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 1 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 1 GAA + 0 CTT + 0 TTC + 0 TCT = 1
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 1 CAT + 1 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 1
2 AGC + 5 GCA + 3 CAG + 1 GCT + 1 CTG + 0 TGC = 12
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 1 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298860|gb|AE003673.1|AE003673 Drosophila melanogaster genomic scaffold 142000013386040 section 3 of 5, complete sequence
Position Repeat Coverage Repeat
35332 TGC * 7 20/21 TGC TGC TGC TGC TGC TGC TGT
79140 TGG * 8 23/24 TGG TGG TGG TGG TGA TGG TGG TGG
81025 TAT * 12 33/36 TAT TAT TAT TAT TAT TAT TAT TTT TAT TAT TAT ATT
107929 GCT * 7 19/21 GCT GCT GCT GAT GCT GCT GCA
129652 TAT * 7 19/21 TAT TAT TAT TAT TAT TAT TTG
157499 TTG * 7 19/21 TTG TTG CTG TTC TTG TTG TTG
159991 GCT * 7 19/21 GCT GCT GCA GTT GCT GCT GCT
177546 CAG * 9 25/27 CAG CAG CAA CAG CAG CAG CAG CAA CAG
245314 GCA * 11 30/33 GCA GCA GCA GCA GCA ACA GCA ACA GCA GCA ACA
245410 GCA * 8 22/24 GCA ACA GCA GCA ACA GCA GCA GCA
245530 CAA * 7 19/21 CAA CAG CAA CAA CAA CAA CAG
245675 GCC * 7 19/21 GCC GCC GCT GCC GCC GCC GGC
261812 CGG * 7 19/21 CGG CGG CGG CGG CAT CGG CGG
262038 GCA * 8 22/24 GCA GCA GCA TCA GCA GCA GCA GGA
285729 GTT * 11 30/33 GTT GCT GTT GTT GTT GTT GTT GTT ATT ATT GTT
286196 CTG * 7 19/21 CTG CTG CGT CTG CTG CTG CTG
308255 GAG * 7 19/21 GAG GAG GAG GAG AAG GAA GAG
-----------------------------------------------------------------------------------------
Total sequence length......................... 309357
Total number of repeats detected.............. 17
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
TAT 2 1 1 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 3 2 1 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CGG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 2 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 1 CAA + 1 GTT + 1 TTG + 0 TGT = 3
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 1
0 AGC + 3 GCA + 1 CAG + 2 GCT + 1 CTG + 1 TGC = 8
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 1 TGG = 1
0 GGC + 0 GCG + 1 CGG + 1 GCC + 0 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298812|gb|AE003672.1|AE003672 Drosophila melanogaster genomic scaffold 142000013386040 section 2 of 5, complete sequence
Position Repeat Coverage Repeat
48768 ATA * 7 21/21 ATA ATA ATA ATA ATA ATA ATA
79262 CGC * 7 19/21 CGC CGC CGC CGC CGC TGC AGC
86480 GCC * 10 28/30 GCC GCC GCT GCC GCC GCC GCC GCC GCT GCC
104920 GCT * 8 22/24 GCT GCT GCT GCT GCG GCC GCT GCT
110628 GCA * 18 49/54 GCA GCA GCA GCA GCA ACA GCA GCA GCA GCA GCA TCA CCA GCA GCA GCA ACA CCA
112487 GCA * 8 22/24 GCA CCA GCA GCA GCA GCA GCA ACA
112515 CAG * 18 49/54 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAA CAG CAG CAG CAG CAG GCG CAC CAC
112614 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CAA
154286 TTG * 7 19/21 TTG TTG CTG TTG TTG TTT TTG
191994 GCT * 7 19/21 GCT GCT GCT GTT GCT GCT GGT
192032 TGC * 10 27/30 TGC TGC TGG TGC TGC TGG TGC TGC TGC TGT
193420 TGC * 7 19/21 TGC AGC TGC TGT TGC TGC TGC
207522 CTG * 8 22/24 CTG GTG CTG CTG CTG CTC CTG CTG
207549 CTG * 8 22/24 CTG CTG CTG ATG CTG CTG CTG TTG
212743 CCT * 7 19/21 CCT CCT CCT CCT CAT CCT TCT
214401 TCA * 7 19/21 TCA TCA TTA TCA TCA TCA CCA
247988 CCT * 7 19/21 CCT CCT CCT TCT CCT GCT CCT
264979 TTA * 7 19/21 TTA TTA TTA TTA TTA TAA TAA
288129 CAG * 7 19/21 CAG CAA CAA CAG CAG CAG CAG
290552 ACA * 8 22/24 ACA ACA ACA ACC TCA ACA ACA ACA
291160 GCA * 7 20/21 GCA GCA GCA GCA GCA GCA TCA
291205 GCA * 9 25/27 GCA GCA ACA GCA GCA GCA GCA GCA ACA
-----------------------------------------------------------------------------------------
Total sequence length......................... 301601
Total number of repeats detected.............. 22
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 1 1 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 4 3 0 0 1 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCC 1 0 1 0 0 0 0 0 0 0 0 0 0
CAG 3 2 0 0 1 0 0 0 0 0 0 0 0
CTG 2 2 0 0 0 0 0 0 0 0 0 0 0
CGC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 0 CAA + 0 GTT + 1 TTG + 0 TGT = 2
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 1 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 2 CCT + 0 CTC + 0 TCC = 2
0 AGC + 4 GCA + 3 CAG + 2 GCT + 2 CTG + 2 TGC = 13
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 1 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298787|gb|AE003671.1|AE003671 Drosophila melanogaster genomic scaffold 142000013386040 section 1 of 5, complete sequence
Position Repeat Coverage Repeat
84603 GCT * 7 20/21 GCT GCT GCT GCT GCT TCT GCT
115779 CTG * 10 27/30 CTG CTG CTG CTG CTG CTG CTG CCG CCG CCG
123434 CAG * 12 33/36 CAG CAG CAG CAG CAA CAG CAA CAG CAG CAG CAG CAA
123614 CAG * 7 19/21 CAG CAA CAG CAT CAG CAG CAG
123641 CAG * 11 30/33 CAG CAG CAG CAG CAG CAG CAA CAG CAG CAA CAT
248139 CTG * 7 19/21 CTG CTG CTG CTC CTG CTG ATG
255681 GTC * 8 22/24 GTC GTT GTC GTC GTC GTT GTC GTC
265181 ACC * 7 20/21 ACC ACG ACC ACC ACC ACC ACC
272164 CAG * 9 25/27 CAG CAA CAG CAG CAG CAG CAG CAA CAG
280346 GCT * 10 27/30 GCT GCT GCT GTT GCT GCT GCT GCT GCT GGC
292060 TTA * 8 24/24 TTA TTA TTA TTA TTA TTA TTA TTA
-----------------------------------------------------------------------------------------
Total sequence length......................... 309023
Total number of repeats detected.............. 11
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
GTC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 2 1 1 0 0 0 0 0 0 0 0 0 0
CAG 4 2 2 0 0 0 0 0 0 0 0 0 0
CTG 2 1 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 4 CAG + 2 GCT + 2 CTG + 0 TGC = 8
0 ACG + 0 CGA + 0 GAC + 0 CGT + 1 GTC + 0 TCG = 1
1 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7316093|gb|AE002708.1|AE002708 Drosophila melanogaster genomic scaffold 142000013386035, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7302106|gb|AE003780.1|AE003780 Drosophila melanogaster genomic scaffold 142000013386035 section 105 of 105, complete sequence
Position Repeat Coverage Repeat
24513 AAT * 7 19/21 AAT AAT AAT TAT TAT AAT AAT
37058 CAG * 7 19/21 CAG AAG TAG CAG CAG CAG CAG
109281 ACA * 7 19/21 ACA AAA ACA ACG ACA ACA ACA
172366 CAT * 7 19/21 CAT CAT CAT CAT CAT CAG CAG
-----------------------------------------------------------------------------------------
Total sequence length......................... 249284
Total number of repeats detected.............. 4
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 1 CAG + 0 GCT + 0 CTG + 0 TGC = 1
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7302062|gb|AE003779.1|AE003779 Drosophila melanogaster genomic scaffold 142000013386035 section 104 of 105, complete sequence
Position Repeat Coverage Repeat
22507 CAG * 7 19/21 CAG CAG CAG CCG CAG CAG CAA
22894 GCA * 11 30/33 GCA ACA ACA GCA GCA GCA GCA GCA GCA GCA ACA
22931 CAG * 8 22/24 CAG CAG CAG CAG CAA CAG CAG CAA
40752 TGC * 7 19/21 TGC TTC TGC TGC TTC TGC TGC
43960 GCT * 8 22/24 GCT ACT GCT GCT GCT GCT GTT GCT
56985 TCA * 7 19/21 TCA TGA TCA TAA TCA TCA TCA
62280 GCA * 14 40/42 GCA ACA GCA GCA GCA GTA GCA GCA GCA GCA GCA GCA GCA GCA
70057 GCA * 7 19/21 GCA GCA GCA GCC GCA ACA GCA
70489 GCA * 12 33/36 GCA GCA ACA GCA GCA GCA GCA CCA GCA GCA GCA TCA
70532 CAG * 7 20/21 CAG CAG CAG CAG CAA CAG CAG
70556 CAG * 8 22/24 CAG CAG CAG CAG CAC CAG CAG CTG
70696 GCC * 7 19/21 GCC TCC TCC GCC GCC GCC GCC
133459 ACA * 8 22/24 ACA ACA ACA ACA ACA GCA GCA ACA
167468 TGG * 10 27/30 TGG TGG TGG TGG TGG TGG TGG TGG TGG ACA
173547 CCA * 7 19/21 CCA CCA CCG CCT CCA CCA CCA
173681 GCC * 8 22/24 GCC GCC GCC GCC ACC ACC GCC GCC
198239 AGC * 8 22/24 AGC AGC AAC AAC AGC AGC AGC AGC
208520 CAA * 7 19/21 CAA CGG CAA CAA CAA CAA CAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 232064
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 4 1 2 1 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCC 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 4 4 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 1 CAA + 0 GTT + 0 TTG + 0 TGT = 2
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 1 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 4 GCA + 4 CAG + 1 GCT + 0 CTG + 1 TGC = 11
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 1 CCA + 0 CAC + 0 GGT + 0 GTG + 1 TGG = 2
0 GGC + 0 GCG + 0 CGG + 2 GCC + 0 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7302043|gb|AE003778.1|AE003778 Drosophila melanogaster genomic scaffold 142000013386035 section 103 of 105, complete sequence
Position Repeat Coverage Repeat
2783 GCA * 9 25/27 GCA GGT GCA GCA GCA GCA GCA GCA GCA
5773 GCA * 22 60/66 GCA GCA ACA GCA GCA GCA GCA GCA ACA GCA GCA GCA ACA GCA GCA GCA GCA ACA GCA ACA CCA GCA
10848 GTT * 7 19/21 GTT GTT GTT GTT GGT GTT TTT
55592 ATC * 21 59/63 ATC ATC ATC ATC CGC ATC ATC ATC ATC ATC ATT ATC ATC ATC ATC ATC ATC ATC ATC AGC ATC
66771 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG GAG
86850 TGC * 7 19/21 TGC CGC TGC CGC TGC TGC TGC
88866 CAA * 8 22/24 CAA CAA CAT CAA CAA CAG CAA CAA
126191 CCT * 8 22/24 CCT CCT CCT GCT CCC CCT CCT CCT
155894 GAG * 8 22/24 GAG GAG GAG GGG GAG CAG GAG GAG
164531 GCC * 7 19/21 GCC GCC GCC GCC GCC GCC GGT
164729 ACA * 7 19/21 ACA CCA ACA ACA AGA ACA ACA
183064 GCA * 10 28/30 GCA GCA GCA GCA GCA GCA GCA ACT GCA GCA
192833 CAC * 7 19/21 CAC CAG CAG CAC CAC CAC CAC
198580 ATG * 8 22/24 ATG ATG ATG ATG ATG ATG ACG ACG
212578 GTT * 8 22/24 GTT GTT GTT ATT GCT GTT GTT GTT
-----------------------------------------------------------------------------------------
Total sequence length......................... 225108
Total number of repeats detected.............. 15
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 0 0 0 0 1 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCA 3 1 1 0 0 0 1 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 1 CAA + 2 GTT + 0 TTG + 0 TGT = 4
1 ATG + 0 TGA + 0 GAT + 0 CAT + 1 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 1 CCT + 0 CTC + 0 TCC = 2
0 AGC + 3 GCA + 1 CAG + 0 GCT + 0 CTG + 1 TGC = 5
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7302015|gb|AE003777.1|AE003777 Drosophila melanogaster genomic scaffold 142000013386035 section 102 of 105, complete sequence
Position Repeat Coverage Repeat
13555 GAT * 7 19/21 GAT GTT GAT GAT GAT GAT GAG
38918 AGG * 7 20/21 AGG AGG AGG AGG AGG AGG AGC
55174 AAG * 7 20/21 AAG AAG AAG AAG AAG AAG GAG
84507 TTG * 7 19/21 TTG TTC TGG TTG TTG TTG TTG
94651 GCA * 9 25/27 GCA GCC GCA ACA GCA GCA GCA GCA GCA
95126 CAG * 17 47/51 CAG CAG CAG CAG CAG CAG CAA CAG CAG CAG CAA CAG CAA CTG CAG CAG CAG
101547 GTG * 7 19/21 GTG GTG GTG GTG GTG ATG GTA
104779 TAT * 8 23/24 TAT TAT TAT TAA TAT TAT TAT TAT
111329 CAT * 10 27/30 CAT CAT CAT CAG CAT CAT GAT CAT CAT CTT
129568 AGT * 10 28/30 AGT ATT AGA AGT AGT AGT AGT AGT AGT AGT
143412 AAT * 7 20/21 AAT AAT AAT AAA AAT AAT AAT
177432 ATG * 8 22/24 ATG ATG ATG ATG ATG ATG ATG AGC
180247 CTG * 10 28/30 CTG CTG ATG CTG CTG CTG CTG CTG CTT CTG
206224 GCT * 7 19/21 GCT TCT GCT GCT GCT GCA GCT
207479 ATG * 9 25/27 ATG ATG ATG ATG ATG GTG ATG ACG ATG
207993 CAT * 10 27/30 CAT CAT CAT CAT CAT CAT CAT CAT CGT GCT
228603 GCA * 7 19/21 GCA GCA GCA GCG GCA GCA GAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 232000
Total number of repeats detected.............. 17
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 2 2 0 0 0 0 0 0 0 0 0 0 0
AGT 1 0 1 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 2 0 2 0 0 0 0 0 0 0 0 0 0
CAG 1 0 0 0 1 0 0 0 0 0 0 0 0
CTG 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 2
1 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 1
0 AAC + 0 ACA + 0 CAA + 0 GTT + 1 TTG + 0 TGT = 1
2 ATG + 0 TGA + 1 GAT + 2 CAT + 0 ATC + 0 TCA = 5
1 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 1
1 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 1
0 AGC + 2 GCA + 1 CAG + 1 GCT + 1 CTG + 0 TGC = 5
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 1 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7301994|gb|AE003776.1|AE003776 Drosophila melanogaster genomic scaffold 142000013386035 section 101 of 105, complete sequence
Position Repeat Coverage Repeat
9458 CAC * 7 19/21 CAC CAC CAC CAC CAC CAG CAG
23311 CAA * 8 22/24 CAA CAG CAG CAA CAA CAA CAA CAA
38989 TTG * 7 19/21 TTG TTG CTG CTG TTG TTG TTG
118645 CTG * 8 22/24 CTG CTT CTG CTT CTG CTG CTG CTG
137083 AAT * 7 19/21 AAT AAT AAC AAT AAC AAT AAT
139530 AGC * 8 22/24 AGC AGC AGC AGC AGC AGC AAC AAC
176421 GCA * 8 22/24 GCA GCA GCA GGA GCA GCA GCA CCA
194580 ATT * 8 22/24 ATT ATT ATT ATT ATT ATT ATG ATG
-----------------------------------------------------------------------------------------
Total sequence length......................... 225879
Total number of repeats detected.............. 8
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 1 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 1 CAA + 0 GTT + 1 TTG + 0 TGT = 2
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 1 GCA + 0 CAG + 0 GCT + 1 CTG + 0 TGC = 3
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7301969|gb|AE003775.1|AE003775 Drosophila melanogaster genomic scaffold 142000013386035 section 100 of 105, complete sequence
Position Repeat Coverage Repeat
657 TGC * 7 19/21 TGC TGC CGC TGC TGC TGC TGT
90278 GAT * 7 19/21 GAT GAG GCT GAT GAT GAT GAT
92592 CAC * 10 28/30 CAC CAG CAG CAC CAC CAC CAC CAC CAC CAC
103783 CAG * 11 30/33 CAG CAG CAG CAA CTG CAG CAG CAG CAG CAG CAT
107391 CAT * 7 21/21 CAT CAT CAT CAT CAT CAT CAT
113941 AGC * 7 19/21 AGC AGC AAA AGC AGC AGC AGC
115748 CAG * 12 33/36 CAG CAG CAG CAC CAG CAG CAG CAG CAA CAG CAT CAG
115945 GCC * 7 20/21 GCC GCC GCC GCC GCC ACC GCC
122313 TGT * 7 19/21 TGT TGT TGT TGT TGT TGC TCT
122477 TGC * 10 28/30 TGC TGT TGC TGC TGC TGC TGC TGC TGT TGC
122524 CTG * 8 22/24 CTG TTG TTG CTG CTG CTG CTG CTG
122675 TGC * 7 19/21 TGC TGG TGC TGA TGC TGC TGC
129691 ATT * 8 23/24 ATT ATT ATT ATT TTT ATT ATT ATT
133877 TAG * 11 31/33 TAG TAG CAG TAG TAG TAG TAG TAA TAG TAG TAG
137982 GTT * 7 19/21 GTT GTT GTG GTT GTT GTA GTT
147273 GCA * 7 19/21 GCA ACT GCA GCA GCA GCA GCA
170124 GGT * 10 27/30 GGT GCA GGT GGT GGT GGT GGT GGT GGT GGC
204583 TGC * 7 20/21 TGC TGC TGC TGC TGC TGC TGG
207075 CTG * 7 19/21 CTG CTG CTG CTG TTG CTG TTG
207098 GCT * 7 19/21 GCT GCT GCT GCT GCT GCT GGG
207587 CTG * 8 22/24 CTG TTG CTG CTG CTG CTG TTG CTG
207618 TGC * 7 19/21 TGC TGT TGC TGT TGC TGC TGC
207696 TGC * 11 30/33 TGC TGC TGC TGC TGT TGG TGC TGC TGC TGT TGC
207735 TGC * 8 22/24 TGC TGC GGC TGC TGC TGC TGC TGG
209033 TGC * 22 62/66 TGC TGC TGC TGC TGT TGT TGC TGC TGC TGC TGC TGT TGC TGC TGC TGC TGC TGC TGT TGC TGC TGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 236109
Total number of repeats detected.............. 25
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAG 1 0 1 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 8 5 2 0 0 0 1 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 0 2 0 0 0 0 0 0 0 0 0 0
CAC 1 0 1 0 0 0 0 0 0 0 0 0 0
CTG 3 3 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 1 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 1 GTT + 0 TTG + 1 TGT = 2
0 ATG + 0 TGA + 1 GAT + 1 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 1 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 1 GCA + 2 CAG + 1 GCT + 3 CTG + 8 TGC = 16
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 1 CAC + 1 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7301938|gb|AE003774.1|AE003774 Drosophila melanogaster genomic scaffold 142000013386035 section 99 of 105, complete sequence
Position Repeat Coverage Repeat
30356 ATT * 11 30/33 ATT GTT ATT ATT ATT ATT ATT GTT ATT GTT ATT
45398 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAA CAC
97404 AGT * 7 20/21 AGT AGT AGT AGT AGA AGT AGT
116968 GGA * 7 19/21 GGA GGT GGA GGA GCA GGA GGA
116990 ACC * 8 22/24 ACC ACC ACC ACC ACC ACG ACG ACC
193067 ATA * 7 19/21 ATA ATA ATA ATA TTA ATA ATG
220738 TGC * 8 22/24 TGC TGC TGC TGC TGC TCC TGC TCC
231756 TAT * 7 19/21 TAT TAT TAT TAT TAT TAT ATT
234334 GGA * 7 19/21 GGA GAA GGA GGC GGA GGA GGA
234607 TTG * 7 20/21 TTG TTG TTG TTG TTG TTG TTT
-----------------------------------------------------------------------------------------
Total sequence length......................... 239003
Total number of repeats detected.............. 10
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 1 0 1 0 0 0 0 0 0 0 0 0 0
AGT 1 1 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 1 ATT + 0 TTA + 1 TAT = 3
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 1 TTG + 0 TGT = 1
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
1 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 2 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 2
0 AGC + 0 GCA + 1 CAG + 0 GCT + 0 CTG + 1 TGC = 2
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
1 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7301915|gb|AE003773.1|AE003773 Drosophila melanogaster genomic scaffold 142000013386035 section 98 of 105, complete sequence
Position Repeat Coverage Repeat
74206 CAG * 7 19/21 CAG CAG CAG CAC CAG CAA CAG
74788 AAC * 8 22/24 AAC CGC AAC AAC AAC AAC AAC AAC
75184 CAG * 8 23/24 CAG CAG CAG CAG CAA CAG CAG CAG
75298 CAG * 10 27/30 CAG CAG CAG CAG CAG CAG CAG CTG CAA CAA
91597 TGC * 7 20/21 TGC TGC TGC TGC TGC TGC TTC
99706 ATT * 7 19/21 ATT ATT ATT ATT ATT TTT GTT
111057 TCA * 22 60/66 TCA TTA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCG TGT CGA
133245 CAG * 7 19/21 CAG CAG CAG CAG CAG CGG CAA
133570 AAT * 7 19/21 AAT AAT AAG AAT AAG AAT AAT
134799 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CAA
154189 GCT * 12 33/36 GCT GCC GCT GCT GCT GCC GCT GCT GCT GCT GCT GCA
155923 GCA * 11 30/33 GCA GCA GCA ACA GCA GCA GCA GCA GCA GCA ACC
156014 CAG * 9 25/27 CAG CAG CAG CAG CAG CAG CAA CAT CAG
156134 CAG * 11 30/33 CAG CAG CAG CAG CAC CAA CAG CAG CAG CAA CAG
156266 AGC * 8 23/24 AGC AGC AGC AGC AGC AGC AGC AGT
192544 AGC * 7 19/21 AGC AGC AAC AAC AGC AGC AGC
192600 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 226905
Total number of repeats detected.............. 17
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 1 0 0 0 0 0 1 0 0 0 0 0 0
GCA 1 0 1 0 0 0 0 0 0 0 0 0 0
GCT 1 0 1 0 0 0 0 0 0 0 0 0 0
CAG 8 6 2 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 1 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 1 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
2 AGC + 1 GCA + 8 CAG + 1 GCT + 0 CTG + 1 TGC = 13
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7301871|gb|AE003772.1|AE003772 Drosophila melanogaster genomic scaffold 142000013386035 section 97 of 105, complete sequence
Position Repeat Coverage Repeat
13722 TCA * 7 19/21 TCA TCA TCA TCA TCT GCA TCA
13949 CAG * 10 27/30 CAG CAG CAG CAG CAA CAG CAG CAG CAG GTG
33456 GGA * 7 19/21 GGA GGA GGA TGA CGA GGA GGA
67521 GGA * 8 22/24 GGA CGA GGA GGA GGA GGA GGA CGA
82133 ACA * 7 19/21 ACA ATA ACA ACG ACA ACA ACA
82594 CCT * 7 20/21 CCT CCG CCT CCT CCT CCT CCT
84585 TGT * 10 27/30 TGT TGT TAT TGT TGT TGT TGT TGT TGT TTC
103980 GCT * 8 22/24 GCT GCT GCT GCT GCT GCT GCT TTT
117468 TCA * 13 36/39 TCA TCA TCA TCA TCA TCA TCA TCA TCA TTA CCA TCA TCT
133228 CAG * 11 30/33 CAG CAG CAG CAG CAG CAA CAA CAG CAG CAG CAT
133715 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CCG CAA
133963 GCA * 7 19/21 GCA GCA ACA TCA GCA GCA GCA
134054 CAG * 7 19/21 CAG CAG CAG CGT CAG CAG CAG
134081 CAG * 10 28/30 CAG CAG CAA CAG CAG CAG CAG CAA CAG CAG
135402 CAG * 12 34/36 CAG CAG CAA CTG CAG CAG CAG CAG CAG CAG CAG CAG
135494 GCA * 12 33/36 GCA ACA GCA GCA GCA GCA GCA GCA ACA GCA ACA GCA
225211 ATT * 7 19/21 ATT AAT ATT ATT ATT ATT ATA
-----------------------------------------------------------------------------------------
Total sequence length......................... 228448
Total number of repeats detected.............. 17
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 0 1 0 0 0 0 0 0 0 0 0 0
TCA 2 1 0 1 0 0 0 0 0 0 0 0 0
GGA 2 2 0 0 0 0 0 0 0 0 0 0 0
GCA 2 1 1 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 6 2 4 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 1 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 0 CAA + 0 GTT + 0 TTG + 1 TGT = 2
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 2 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 2 GGA + 0 GAG + 1 CCT + 0 CTC + 0 TCC = 3
0 AGC + 2 GCA + 6 CAG + 1 GCT + 0 CTG + 0 TGC = 9
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7301817|gb|AE003771.1|AE003771 Drosophila melanogaster genomic scaffold 142000013386035 section 96 of 105, complete sequence
Position Repeat Coverage Repeat
15779 GTT * 8 22/24 GTT GTT GCT GTT GTT GTT GCT GTT
18395 GAG * 7 19/21 GAG GAG GAG GAG CAG GCG GAG
18521 CAG * 7 19/21 CAG CAG CAG CTG CAG CAG CAC
28187 AGC * 7 20/21 AGC AGC AGC AGC AGC AGC AAC
33097 GCA * 8 22/24 GCA GCA GCA GCA GCA ACT GCA GCA
33130 GCA * 7 19/21 GCA GCA ACA TCA GCA GCA GCA
33152 CAG * 7 20/21 CAG CAG CAG CTG CAG CAG CAG
33355 GCA * 9 25/27 GCA ACA GCC GCA GCA GCA GCA GCA GCA
33418 GCA * 7 20/21 GCA ACA GCA GCA GCA GCA GCA
33491 CAG * 7 20/21 CAG CAG CAG CAG CAG CAG CAA
33595 GCA * 7 19/21 GCA GCA GCA GCA ACA GCA TCA
56290 CAG * 12 33/36 CAG CAG CAG CAG CAG CAG CAG CAG CAT CAT CTG CAG
56343 GCA * 8 23/24 GCA GCA GCA GCA GCA GCA ACA GCA
56587 CAG * 8 22/24 CAG CAA CAG CAG CAG CAG CAG CAA
56650 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CAT
108951 TAT * 8 22/24 TAT TAT TAG TAT TAT TAT TAT TAA
146558 CAG * 9 25/27 CAG CGG CAT CAG CAG CAG CAG CAG CAG
168830 CAA * 7 19/21 CAA CAA CAA CAG GAA CAA CAA
216747 TAA * 7 19/21 TAA TAA TAA TAA TAA TCA TTA
220635 GCT * 10 27/30 GCT GCT GCT GGT GCT GCT GCT GCT GAT GTT
-----------------------------------------------------------------------------------------
Total sequence length......................... 235127
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 6 6 0 0 0 0 0 0 0 0 0 0 0
GCT 1 0 1 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 7 6 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 0 ATT + 0 TTA + 1 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 1 CAA + 1 GTT + 0 TTG + 0 TGT = 2
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 1
1 AGC + 6 GCA + 7 CAG + 1 GCT + 0 CTG + 0 TGC = 15
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7301790|gb|AE003770.1|AE003770 Drosophila melanogaster genomic scaffold 142000013386035 section 95 of 105, complete sequence
Position Repeat Coverage Repeat
39109 GCC * 8 22/24 GCC GCC GCC ACC GCC ACC GCC GCC
42244 ATG * 7 20/21 ATG ATG ATG ATG ATG CTG ATG
47242 CAG * 7 19/21 CAG CAA CAC CAG CAG CAG CAG
48947 TGA * 8 23/24 TGA TGA TGA TGA TGA TGA TGA TGG
52072 GCT * 8 22/24 GCT GTT GTT GCT GCT GCT GCT GCT
52239 GCA * 7 19/21 GCA GCA GCA ACA GCA ACA GCA
54035 GGA * 10 27/30 GGA AGA AGA GGA GGA GGA GGA GGA GGA GGG
60539 TTG * 10 28/30 TTG TTG TAG TTG TTG TTG TTG CTG TTG TTG
65385 AAC * 10 28/30 AAC AAC AAC AAC AAC AAC AAC AAC AGC AAG
71659 GCG * 7 19/21 GCG GCG GCG ACG GCG GCG GGG
79410 GTT * 14 38/42 GTT GTT ATT GTT GTT GTT GTT GTT GTT GCT GTG GTT GTT GTA
123783 ACA * 8 22/24 ACA ACA ACA ACA ACA GCA AGA ACA
131355 CCT * 8 22/24 CCT CCT CCT CCG CCA CCT CCT CCT
182261 CAC * 11 31/33 CAC CAC CAC CAC CAC CAC CAC CAC CAC TAC CAT
183773 CAG * 8 22/24 CAG CAG TCG CAG CAG CAG CAG CAG
186040 CAG * 12 33/36 CAG CAG CAG CAA CAG CAG CAG CAG CAG CAG CAG AAC
186094 CAG * 11 31/33 CAG CAA CAG CAG CAG CAG CAG CAA CAG CAG CAG
208702 CAC * 10 27/30 CAC CAC CAA CAC CAC CAC CAC CAC CGC CGC
218518 AAC * 8 22/24 AAC AAC AAT AAC AGC AAC AAC AAC
218542 AAT * 9 25/27 AAT AAT AAT AAT AAT AGT AAT AAC AAT
-----------------------------------------------------------------------------------------
Total sequence length......................... 224100
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 2 1 1 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 0 1 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 0 0 1 0 0 0 0 0 0 0 0 0
GGA 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 4 2 2 0 0 0 0 0 0 0 0 0 0
CAC 2 0 2 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
2 AAC + 1 ACA + 0 CAA + 1 GTT + 1 TTG + 0 TGT = 5
1 ATG + 1 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 0 GAG + 1 CCT + 0 CTC + 0 TCC = 2
0 AGC + 1 GCA + 4 CAG + 1 GCT + 0 CTG + 0 TGC = 6
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 2 CAC + 0 GGT + 0 GTG + 0 TGG = 2
0 GGC + 1 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7301774|gb|AE003769.1|AE003769 Drosophila melanogaster genomic scaffold 142000013386035 section 94 of 105, complete sequence
Position Repeat Coverage Repeat
13512 ATA * 7 19/21 ATA ATA GTA ATA ATA ATA AAA
54020 AGG * 10 28/30 AGG AGG AGG AGG AGG AGG AGG AGG AGG GGC
63275 TTG * 10 27/30 TTG TTG TTG TCG TTG TTG TTG TTG TTG TGC
63757 TTG * 8 24/24 TTG TTG TTG TTG TTG TTG TTG TTG
64881 TGC * 8 23/24 TGC TGC TGC TGC TGC TGC TGC TGG
71788 TTG * 10 27/30 TTG TTG TTG TTG TTG TTG TTG TTG TTA TGA
75528 TGT * 10 28/30 TGT TGT TGT TGT TGT TGT TGT TCT TGT TAT
77781 GTT * 7 19/21 GTT GTT GTT GTG GTT GCT GTT
94832 CTT * 7 19/21 CTT CTT CTT CTG CGT CTT CTT
94857 TTG * 11 30/33 TTG TTG TTG CTG TTG TTG TTG ATG TTG TTG TAG
109393 GCA * 8 22/24 GCA GCA GCA GAA TCA GCA GCA GCA
114218 TCA * 7 19/21 TCA TCA TCA TCA TCA TTA TCG
116484 GAG * 7 19/21 GAG GAG GAG GAG TAG GTG GAG
130756 TGC * 7 19/21 TGC TGC CGT TGC TGC TGC TGC
155168 TGC * 9 25/27 TGC TGC TGC TGC TGC TGC TGC TGC AGA
175147 TCA * 8 23/24 TCA TCA TCA TCA TCA ACA TCA TCA
208190 CAG * 17 48/51 CAG CAG CAG CAG CAG CAG CAA CAG CAG CAG CAG CAG CAG CAG CAA CAA CAG
214995 TTC * 7 19/21 TTC TAC TGC TTC TTC TTC TTC
-----------------------------------------------------------------------------------------
Total sequence length......................... 234161
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 1 0 1 0 0 0 0 0 0 0 0 0 0
TTG 4 1 3 0 0 0 0 0 0 0 0 0 0
TTC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 3 3 0 0 0 0 0 0 0 0 0 0 0
TCA 2 2 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 0 0 0 1 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 1 CTT + 1 TTC + 0 TCT = 2
0 AAC + 0 ACA + 0 CAA + 1 GTT + 4 TTG + 1 TGT = 6
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 2 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 2
0 AGC + 1 GCA + 1 CAG + 0 GCT + 0 CTG + 3 TGC = 5
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7301730|gb|AE003768.1|AE003768 Drosophila melanogaster genomic scaffold 142000013386035 section 93 of 105, complete sequence
Position Repeat Coverage Repeat
4607 CTT * 7 19/21 CTT CTT CTT GGT CTT CTT CTT
25804 CGA * 7 19/21 CGA CGA CGA CGA TGA CTA CGA
50160 GTT * 12 33/36 GTT GTT GTT GTT GTT GTT GTT GTT GTT GTT GCT CTC
63061 AGG * 7 19/21 AGG AGG AGA ACG AGG AGG AGG
65283 CAG * 7 19/21 CAG CAG CAG CAG CAA CAA CAG
65495 GCA * 10 27/30 GCA GCA GCA GCA GCA GCA GCA TCA GCA GTT
65667 CAG * 8 23/24 CAG CAG CCG CAG CAG CAG CAG CAG
65769 CAG * 7 20/21 CAG CAG CAG CAA CAG CAG CAG
65994 CAA * 7 19/21 CAA CAG CAG CAA CAA CAA CAA
66818 GCA * 9 25/27 GCA GCA GCA GCA GCA ACA ACA GCA GCA
67188 GAC * 7 19/21 GAC GAT GAC GAC GAC GAG GAC
70102 GCA * 7 19/21 GCA GCC GCA GCA GCA GCA ACA
70676 CAA * 8 22/24 CAA CAA CAA CAA CAG CAG CAA CAA
70952 CAG * 8 22/24 CAG CAG CAA CAG CAG CAG CAG CCG
73425 CAG * 8 22/24 CAG CAG CAG CAA CAG CAC CAG CAG
142408 GTG * 10 28/30 GTG GTG GTG GTG GTG GTG GTG TTG GCG GTG
148802 TGC * 15 41/45 TGC TGC TGG TGC TGC TGG TGC TGC TGC TGC TGC TGC TGC TGT TGG
161902 TGC * 7 19/21 TGC TGC TGC TGC TGC TGC CTC
172240 GTT * 8 22/24 GTT GTT GTT GTT GTT GTT GTT TTC
172283 TGT * 7 19/21 TGT TGT TGT TGT TGT TGT TCC
178514 CCT * 7 19/21 CCT CCT CCT CCT GTT CCT CCT
180751 AAG * 8 22/24 AAG AAG AAG AAT AAG CAG AAG AAG
185798 AGC * 7 20/21 AGC AGC CGC AGC AGC AGC AGC
185828 CAG * 7 19/21 CAG GAA CAG CAG CAG CAG CAG
221075 TGG * 8 22/24 TGG TGG TGG TGG TGG CGT TGG TGG
231963 GTG * 8 22/24 GTG GTG GTG GTG GTG GTG GTG GCA
232025 GGT * 7 19/21 GGT GGT GAT GGT GGT GGT CGT
236605 CAG * 7 19/21 CAG GAG CAG GAG CAG CAG CAG
-----------------------------------------------------------------------------------------
Total sequence length......................... 242815
Total number of repeats detected.............. 28
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 1 0 1 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 2 1 1 0 0 0 0 0 0 0 0 0 0
GTG 2 1 1 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 3 2 1 0 0 0 0 0 0 0 0 0 0
CAA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 7 7 0 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CGA 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
1 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 2
0 AAC + 0 ACA + 2 CAA + 2 GTT + 0 TTG + 1 TGT = 5
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 0 GAG + 1 CCT + 0 CTC + 0 TCC = 2
1 AGC + 3 GCA + 7 CAG + 0 GCT + 0 CTG + 2 TGC = 13
0 ACG + 1 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 2
0 ACC + 0 CCA + 0 CAC + 1 GGT + 2 GTG + 1 TGG = 4
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7301701|gb|AE003767.1|AE003767 Drosophila melanogaster genomic scaffold 142000013386035 section 92 of 105, complete sequence
Position Repeat Coverage Repeat
1815 TGC * 8 22/24 TGC TGC CGC CGC TGC TGC TGC TGC
18312 TGG * 8 22/24 TGG TGG TGG CGG TGG TGG AGG TGG
28452 ATG * 8 23/24 ATG ATG ATG GTG ATG ATG ATG ATG
43918 GCA * 8 23/24 GCA GCA GCA ACA GCA GCA GCA GCA
44217 CAC * 7 19/21 CAC CAT CAC CAC CAC CAC CAG
52915 GCT * 8 22/24 GCT GCT GCT GCT GGT GGT GCT GCT
61908 CAT * 7 19/21 CAT CAT CAT CAT CAC CAG CAT
78811 CTG * 7 19/21 CTG CTG CTG CTG CTG CTG GAG
79276 GCG * 7 19/21 GCG GCG GCG GCG GCA GCG GTG
102429 AGC * 9 25/27 AGC AGC AGC AGC AGC AGC AGC AGC AAG
102518 GCA * 7 19/21 GCA GCA ACA GCA GCA GCA ACA
103065 CAG * 7 19/21 CAG CAA CAT CAG CAG CAG CAG
103421 GCA * 8 22/24 GCA ACA GCA ACA GCA GCA GCA GCA
105377 CAG * 7 19/21 CAG CAG CAG CAG CAG CAG CGT
105526 GCA * 7 19/21 GCA GCA GCA GCA GCA GCA ACG
111343 ATG * 7 20/21 ATG ATG ATG ATG ATG ATG TTG
120158 TTG * 7 19/21 TTG TTG TTG ATG TCG TTG TTG
123010 ACA * 7 19/21 ACA ACA ACA ACA ACA ATA ATA
141508 CAG * 7 19/21 CAG CCG CAG CAG TAG CAG CAG
151497 GCA * 7 19/21 GCA GCA GCA GCA AGA GCA GCA
152274 TTA * 8 22/24 TTA TTA TTA TTA TTA TTA CGA TTA
164665 GCT * 8 22/24 GCT GCT GCT TCT GTT GCT GCT GCT
167267 GAT * 8 22/24 GAT GAT GAT GAC GAT GAT GTT GAT
171214 TTG * 7 19/21 TTG TTG TTG TTG CTG TTG CTG
189688 AAC * 7 19/21 AAC AAA AAC AAC AAC AAC AGC
193327 AAC * 7 19/21 AAC AAC AAC AAC AAC AGC AGC
193521 CAA * 11 30/33 CAA CAA CAA CAA CAA CAT CAA CAA CAG CAA GAA
202978 CAT * 7 19/21 CAT CAC CAT CAT CAT CAT CAC
222574 CAG * 7 19/21 CAG CAG CAT CAG CAG CAG CAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 225155
Total number of repeats detected.............. 29
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 2 2 0 0 0 0 0 0 0 0 0 0 0
ATG 2 2 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 5 5 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 0 1 0 0 0 0 0 0 0 0 0 0
CAT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 4 4 0 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
2 AAC + 1 ACA + 1 CAA + 0 GTT + 2 TTG + 0 TGT = 6
2 ATG + 0 TGA + 1 GAT + 2 CAT + 0 ATC + 0 TCA = 5
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 5 GCA + 4 CAG + 2 GCT + 1 CTG + 1 TGC = 14
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 1 TGG = 2
0 GGC + 1 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7301683|gb|AE003766.1|AE003766 Drosophila melanogaster genomic scaffold 142000013386035 section 91 of 105, complete sequence
Position Repeat Coverage Repeat
13740 CTG * 7 19/21 CTG CTG TTG TTG CTG CTG CTG
13911 CTG * 8 22/24 CTG CTG CAT CTG CTG CTG CTG CTG
13940 GCT * 8 22/24 GCT GGT GCT GCT GCT GTT GCT GCT
15484 CCG * 7 19/21 CCG CCG CCG CCT CCA CCG CCG
16149 TGC * 8 22/24 TGC TGC TGC TTT TGC TGC TGC TGC
29280 TCA * 7 19/21 TCA TCA TCA TCA TCG TCT TCA
34111 CGG * 7 19/21 CGG TGG TGG CGG CGG CGG CGG
51052 CAT * 7 19/21 CAT CAT CAT CAT GAT CAT CGT
65446 GGT * 7 19/21 GGT GGT GAT AGT GGT GGT GGT
95250 CTG * 10 28/30 CTG CTG CTC CTG CTG CTG CTG CTG CTG TTG
96206 TAT * 8 23/24 TAT TAT TAT TAT TAT TGT TAT TAT
113837 CAT * 7 20/21 CAT CAT CAT AAT CAT CAT CAT
131927 AGC * 10 27/30 AGC AGC AGC AGC ATC AGC ATC AGC AGC AAC
132615 GAT * 12 33/36 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAC GAC GAC
134635 GTT * 8 22/24 GTT CCT GTT GTT GTT GTT GTT GTT
139631 CAG * 11 30/33 CAG CAG CAG CAG CAG CAG CAG AAG GAG CAA CAG
148354 CTG * 7 19/21 CTG CTG TTG CTG GTG CTG CTG
158492 CAG * 7 19/21 CAG CAG CTG CAG CAG TAG CAG
175978 CCT * 7 19/21 CCT CTT CCT CCT CAT CCT CCT
205546 TGA * 7 19/21 TGA TGA TGA TGA TAA TGA TGG
-----------------------------------------------------------------------------------------
Total sequence length......................... 225894
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGC 1 0 1 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 0 1 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 2 1 1 0 0 0 0 0 0 0 0 0 0
CTG 4 3 1 0 0 0 0 0 0 0 0 0 0
CGG 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 1 GTT + 0 TTG + 0 TGT = 1
0 ATG + 1 TGA + 1 GAT + 2 CAT + 0 ATC + 1 TCA = 5
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 1 CCT + 0 CTC + 0 TCC = 1
1 AGC + 0 GCA + 2 CAG + 1 GCT + 4 CTG + 1 TGC = 9
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 1 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 1 CGG + 0 GCC + 1 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7301668|gb|AE003765.1|AE003765 Drosophila melanogaster genomic scaffold 142000013386035 section 90 of 105, complete sequence
Position Repeat Coverage Repeat
4390 TGG * 7 19/21 TGG CGG TGG TGG TGG TGG TGT
12078 ACA * 8 22/24 ACA ACA ATA ACA ACA ACA ACA ACT
29437 TCC * 7 19/21 TCC TCC TCC TCC TCC TCT TCT
70121 GCT * 10 27/30 GCT GCT GCT GCT GCG GCT GCT GCT GCG ACT
108333 GCT * 7 19/21 GCT CCT GCT GCT TCT GCT GCT
109569 GCA * 7 19/21 GCA GCG GCA GCA GAA GCA GCA
117826 CAG * 7 19/21 CAG CAG AAG CAG CAT CAG CAG
128265 CAG * 9 25/27 CAG CAG GAG CAG CAG CAG CAG CAG CAT
132036 CAG * 8 22/24 CAG CAG CAA CAG GAG CAG CAG CAG
149241 AGA * 7 19/21 AGA AGA AGA AGA ACT AGA AGA
160399 CTG * 7 19/21 CTG GTG CTA CTG CTG CTG CTG
205012 TGC * 8 23/24 TGC TCC TGC TGC TGC TGC TGC TGC
205048 GAT * 8 22/24 GAT GAT GAT GGC GAT GAT GAT GAT
224478 GCA * 10 27/30 GCA GCA GCA GCA GCA GCA GGA GCA GGA GAA
229181 ACG * 8 22/24 ACG ACG ACG ACG ACG ACG ACG AGC
231560 GGT * 9 25/27 GGT GGT GGT GGC GGT GGT GGT GGT GGG
235239 GCT * 7 19/21 GCT GCT GCT GTT GCT GTT GCT
236263 TGC * 9 25/27 TGC TGC TGC TGC TAC TGC TGC TGT TGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 239098
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGA 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
ACG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 1 1 0 0 0 0 0 0 0 0 0 0
GCT 3 2 1 0 0 0 0 0 0 0 0 0 0
CAG 3 3 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 1 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 1
0 AAC + 1 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 0 TGA + 1 GAT + 0 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 1 TCC = 1
0 AGC + 2 GCA + 3 CAG + 3 GCT + 1 CTG + 2 TGC = 11
1 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 1 GGT + 0 GTG + 1 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7301658|gb|AE003764.1|AE003764 Drosophila melanogaster genomic scaffold 142000013386035 section 89 of 105, complete sequence
Position Repeat Coverage Repeat
7677 AGC * 11 30/33 AGC AGC AGC AGC AGC AGC AGC AGC AGG AGC ATT
26828 GCT * 7 19/21 GCT GCT GCT GCT GCT GCT TTT
31100 ACA * 7 19/21 ACA ACA ACA ACA GCA ACA AAA
38341 AGC * 7 19/21 AGC GGC AGC AGC AGC AGC ATC
49590 GCA * 7 19/21 GCA GCA GCA ACA GCA ACA GCA
49617 GCA * 10 27/30 GCA ACA GCA ACA GCA GCA GCA GCA GCA GCT
75099 ATA * 18 50/54 ATA ATA ACA ATA ATA ATA ACA ATA ATA ATA ATA ATA TTA ATA ATA ATT ATA ATA
82061 ATA * 18 50/54 ATA ATA ACA ATA ATA ATA ACA ATA ATA ATA ATA ATA TTA ATA ATA ATT ATA ATA
91247 AGC * 7 19/21 AGC AGC AGC AGA AGG AGC AGC
93585 CAC * 7 19/21 CAC CAC CAC CAC TAC CAT CAC
95724 GGT * 7 19/21 GGT GGT GGT GCT AGT GGT GGT
139194 CAG * 7 19/21 CAG CAG CAC CAG CAG CAG CAA
139218 CAG * 7 19/21 CAG CAG CAG CAG CAG CAG ATG
139301 GCA * 8 22/24 GCA GCA GCT GCA GCA GCT GCA GCA
139356 CAG * 7 19/21 CAG CAT CAG CAG CAG CAG CAC
139412 GCA * 9 25/27 GCA GCA GCA ACA GCA ACA GCA GCA GCA
139453 AGC * 8 22/24 AGC AGC AGC CGC AGC AAC AGC AGC
143673 CTA * 8 22/24 CTA CTA CTA CTA CTA CTA CTA ATG
147562 AGC * 8 22/24 AGC AGC AGC AGC AGC AGC AGT TGC
176698 TGC * 7 19/21 TGC TGC TGC TGC TGC GGC TGT
187812 CTG * 7 19/21 CTG TTG CTG CTG CTG ATG CTG
187837 TGC * 8 22/24 TGC TGC TGT TGC TGT TGC TGC TGC
203224 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CGG
215777 CTG * 7 19/21 CTG CTG CTG CTC CTG CTG TTG
222590 CTG * 8 22/24 CTG GTG ATG CTG CTG CTG CTG CTG
226056 GTG * 7 19/21 GTG GTG TTT GTG GTG GTG GTG
227171 TGC * 7 19/21 TGC TGC TGG TAC TGC TGC TGC
227222 TGC * 8 23/24 TGC TGC TGT TGC TGC TGC TGC TGC
227249 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC TGT TGT
-----------------------------------------------------------------------------------------
Total sequence length......................... 231691
Total number of repeats detected.............. 29
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 2 0 0 0 2 0 0 0 0 0 0 0 0
AGC 5 4 1 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 5 5 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 4 3 1 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 4 4 0 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTA 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 3 3 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 2 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 1 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
5 AGC + 4 GCA + 4 CAG + 1 GCT + 3 CTG + 5 TGC = 22
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 1 CAC + 1 GGT + 1 GTG + 0 TGG = 3
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7301637|gb|AE003763.1|AE003763 Drosophila melanogaster genomic scaffold 142000013386035 section 88 of 105, complete sequence
Position Repeat Coverage Repeat
15394 TGC * 7 19/21 TGC TGC TGC TCC TTC TGC TGC
16189 CAG * 12 34/36 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAA AAG CAG
18698 TGA * 7 19/21 TGA TGA TGC TGA TGA TGA TGG
28136 TCC * 10 27/30 TCC TCG TCG TCC TCC TCC TCC TCC TCC TCG
37882 AGG * 7 19/21 AGG AGG CGC AGG AGG AGG AGG
44661 CTC * 7 19/21 CTC CAC CAC CTC CTC CTC CTC
47563 CCA * 8 22/24 CCA CCG CCA CCA CCA GCA CCA CCA
47596 CCA * 8 22/24 CCA CCG CCA CCA CCA GCA CCA CCA
47662 CCA * 10 27/30 CCA CCG CCA CCA CCA CCA CCA GCA CCA CCT
47700 ACC * 7 19/21 ACC GCC GCC ACC ACC ACC ACC
55209 GGC * 7 19/21 GGC GGA GGC GGC GGC GGT GGC
86131 TAA * 7 19/21 TAA TAA TAA TAA TAA TAT TTA
103600 CAG * 7 19/21 CAG CAG CAT CAG CAG CAG GAG
104905 TGC * 7 19/21 TGC TGC TGC TCC TGC TCC TGC
136175 ACC * 8 22/24 ACC ACC ACC ACT ACC ACC ATC ACC
150255 AGC * 8 22/24 AGC AGA AGC AGA AGC AGC AGC AGC
154831 CAG * 7 20/21 CAG CAG CAG CAG CAG CAA CAG
154866 GCA * 8 22/24 GCA GCA GCA GCA GCA GGT GCA GCA
154951 CAG * 8 22/24 CAG CAG CAG CAG CAA CAG CAG CAT
154996 CAG * 8 22/24 CAG CAG CAG CAG TCG CAG CAG CAG
155121 GCA * 9 25/27 GCA GCA GCA GCA GCA GCA GCA GTA CCA
157319 ATG * 7 19/21 ATG ATA ATG ATG ATG ATG ATT
163601 CAC * 7 19/21 CAC CAC TAC CAC CAC TAC CAC
173455 TTA * 7 20/21 TTA TTA TTA TTA TTA TTA TGA
177590 GTG * 7 20/21 GTG GTG GTG GTG GTG TTG GTG
188922 AAC * 8 22/24 AAC AAC AAC AAC AAC AAG AAC AGC
193885 ATT * 7 19/21 ATT ATT ATT ATT ATT ATT CAT
199924 AGC * 7 19/21 AGC AGA AGC ATC AGC AGC AGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 203557
Total number of repeats detected.............. 28
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 2 0 0 0 0 0 0 0 0 0 0 0
ACC 2 2 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TCC 1 0 1 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 5 4 1 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 3 2 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 1 ATT + 1 TTA + 0 TAT = 3
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 1
1 ATG + 1 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 1 TCC = 3
2 AGC + 2 GCA + 5 CAG + 0 GCT + 0 CTG + 2 TGC = 11
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
2 ACC + 3 CCA + 1 CAC + 0 GGT + 1 GTG + 0 TGG = 7
1 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7301615|gb|AE003762.1|AE003762 Drosophila melanogaster genomic scaffold 142000013386035 section 87 of 105, complete sequence
Position Repeat Coverage Repeat
20389 ACC * 8 22/24 ACC ACC TCC ACC ACC ACC ACC GCC
29799 GCA * 7 19/21 GCA GCA GCC GCA TCA GCA GCA
39609 GCA * 7 19/21 GCA GAA GAA GCA GCA GCA GCA
41078 CAG * 7 19/21 CAG CAG CAG CAG CAG CAG CCA
53534 GCT * 7 19/21 GCT GCT TCT GCT GCT GCT GTT
58608 GCA * 7 19/21 GCA GCA GCA GAA GCA GCA GCC
65877 CAC * 7 20/21 CAC CAA CAC CAC CAC CAC CAC
70007 ATA * 8 22/24 ATA ATA ATA ATA ATA ATA ATA TTC
111344 GCA * 12 33/36 GCA GGA GCA GCA GCA GCA GCA GCA GCA GCA GCT GGA
119838 CAT * 10 28/30 CAT CAT CAT CAT CAT CAT CAT CGT CAT CAG
157996 GAA * 7 19/21 GAA GGA GAA GAA GCA GAA GAA
172722 CTG * 8 22/24 CTG CTG CTG CTG CTG CTA CTT CTG
181577 AAT * 8 22/24 AAT AAT AAT AAT AAT AAT AAT AGG
209314 ATC * 7 19/21 ATC ATC ATC ATC ATC AGC AGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 230995
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 4 3 1 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 0 1 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 1 GAA + 0 CTT + 0 TTC + 0 TCT = 1
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 1 CAT + 1 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 4 GCA + 1 CAG + 1 GCT + 1 CTG + 0 TGC = 7
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
1 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7301591|gb|AE003761.1|AE003761 Drosophila melanogaster genomic scaffold 142000013386035 section 86 of 105, complete sequence
Position Repeat Coverage Repeat
1344 GCT * 8 23/24 GCT GCT GCT GCT GCT GCT GCT GCA
17152 TGT * 7 20/21 TGT TGT TGT TGT TGT TTT TGT
17228 CAA * 11 30/33 CAA CAA CAA CAA CAA CAA CAG CAA CTA CCA CAA
24256 TGC * 7 19/21 TGC TAC TGC TGC TGC TGC TGG
76022 CAA * 8 22/24 CAA CAA CAA CAA CAA CGA CAA CTA
83616 GCA * 9 26/27 GCA GCA GCA GCA GGA GCA GCA GCA GCA
96134 AGC * 7 19/21 AGC AAC AAC AGC AGC AGC AGC
96720 GCA * 9 25/27 GCA GCA GGA GCA GCA GCA GCA GCA GGA
122051 TTG * 10 27/30 TTG TTC TTG TTG TTG TTG TTG TTG TTC TCG
131527 CTG * 7 20/21 CTG CTG CTG TTG CTG CTG CTG
134665 TCC * 8 22/24 TCC TCC TCC TCC TCC TCC TCC TTG
171071 AAT * 7 19/21 AAT AAT AAT ATT AAA AAT AAT
205727 GAT * 8 22/24 GAT GAT TAT AAT GAT GAT GAT GAT
211417 CGT * 7 19/21 CGT CGT CGT CGT CAT CGT TGT
211494 TGC * 14 38/42 TGC TGC TGC TGT TGC TGC TGC TGC TGC TGC TGC AGC TGT TGT
219789 TGC * 7 19/21 TGC GGC TGC TGC TGC TGC AGC
219860 TGC * 8 23/24 TGC TGC TGC TGC TGC TGC TGC TTC
221376 TTG * 11 31/33 TTG TTG GTG TTG TTG TTG TTG TTG TTG TTG TTT
-----------------------------------------------------------------------------------------
Total sequence length......................... 224614
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 2 0 2 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 4 3 0 1 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 2 1 1 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CGT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 2 CAA + 0 GTT + 2 TTG + 1 TGT = 5
0 ATG + 0 TGA + 1 GAT + 0 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 1 TCC = 1
1 AGC + 2 GCA + 0 CAG + 1 GCT + 1 CTG + 4 TGC = 9
0 ACG + 0 CGA + 0 GAC + 1 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7301559|gb|AE003760.1|AE003760 Drosophila melanogaster genomic scaffold 142000013386035 section 85 of 105, complete sequence
Position Repeat Coverage Repeat
6626 GCA * 7 19/21 GCA GCA GCT GCG GCA GCA GCA
7383 TCA * 7 19/21 TCA TCA TCA TCA TCA CCA CCA
7526 CAA * 8 22/24 CAA CAA CAA CAA CAA CAA AAG CAA
23527 CCT * 7 20/21 CCT CCT CCT CCT CCC CCT CCT
27187 CCT * 7 19/21 CCT CAC CCT CCT CCT CCT CCT
32504 TGT * 7 20/21 TGT TGT TGT TGT TGT TGT TCT
52848 ACT * 10 28/30 ACT ACT ACT ACT ACT CCT ACT ACT CCT ACT
61667 CAT * 10 28/30 CAT CAT CAT CAT CAT CAT CAT CAG CAG CAT
79009 TGA * 20 54/60 TGA CAA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGG TAG TGG
84762 AGC * 7 19/21 AGC AGC AGC AGA GGC AGC AGC
85280 ATG * 11 30/33 ATG ATG ATG ATG ATG ATG ATG ATG TTG ATG GGG
94568 GTG * 9 25/27 GTG GTG GTG GTG GTG GTG GTG CTG CTG
94663 ACA * 11 30/33 ACA ACC GCA ACA ACA ACA ACA ACA ACA AGA ACA
102632 GCA * 7 20/21 GCA GCA GCA GCA GCA GCA GGA
102679 AGC * 9 25/27 AGC AGG AGC AGC AGC AGC AGC AAC AGC
113679 TGT * 7 19/21 TGT CGT TGT TGT TGT TGC TGT
121552 CAA * 9 25/27 CAA CAA CAA CAA CAA CAA CAA CAA CTC
128472 AGC * 7 19/21 AGC AGC AGC AGC AGC AGC ACA
132610 CAG * 8 23/24 CAG CAG CAG CAG CAT CAG CAG CAG
134081 AGC * 9 25/27 AGC ATC ATC AGC AGC AGC AGC AGC AGC
137163 TAT * 10 29/30 TAT TAT TAT TAT TAT TAT TAT TAT TTT TAT
162940 CCG * 7 19/21 CCG CCG CCC CCG CCA CCG CCG
177803 CTG * 9 25/27 CTG CTG CTG CTG CTG CTG CTG CTG TTT
-----------------------------------------------------------------------------------------
Total sequence length......................... 198310
Total number of repeats detected.............. 23
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATG 1 0 1 0 0 0 0 0 0 0 0 0 0
AGC 4 4 0 0 0 0 0 0 0 0 0 0 0
ACA 1 0 1 0 0 0 0 0 0 0 0 0 0
ACT 1 0 1 0 0 0 0 0 0 0 0 0 0
TAT 1 0 1 0 0 0 0 0 0 0 0 0 0
TGA 1 0 0 0 0 1 0 0 0 0 0 0 0
TGT 2 2 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAT 1 0 1 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 2 CAA + 0 GTT + 0 TTG + 2 TGT = 5
1 ATG + 1 TGA + 0 GAT + 1 CAT + 0 ATC + 1 TCA = 4
0 AGT + 0 GTA + 0 TAG + 1 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 2 CCT + 0 CTC + 0 TCC = 2
4 AGC + 2 GCA + 1 CAG + 0 GCT + 1 CTG + 0 TGC = 8
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 1 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 1 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7301528|gb|AE003759.1|AE003759 Drosophila melanogaster genomic scaffold 142000013386035 section 84 of 105, complete sequence
Position Repeat Coverage Repeat
33941 GAG * 8 22/24 GAG GAG GAG GAG GAG GAT GAG GTG
38623 CGG * 7 19/21 CGG CGG CGG CTC CGG CGG CGG
39672 ATG * 7 20/21 ATG ATG ATG ATG ATG ATG ATT
114317 TGC * 10 27/30 TGC TGC TGC TGC TGC TGC TGC TCC AGC TGA
115837 GGT * 8 22/24 GGT GGT GGT GGT GGT GCT AGT GGT
122464 TCA * 11 30/33 TCA TCA TCA TCA TCA TCA TCA TCA TCA GCC CCA
123803 GGC * 11 30/33 GGC GGC GGC GGC GGC GGC GGC GGT GAC GAC GGC
126166 GTT * 9 25/27 GTT GTT GTT GTT GTT GTT GTT GTT GGC
139597 TAA * 8 23/24 TAA TGA TAA TAA TAA TAA TAA TAA
139623 TAA * 7 19/21 TAA TAA TAA TAA TAA TAA AAT
180498 TGC * 7 19/21 TGC TGC TGC TGC TGC AGT TGC
180992 TGC * 8 22/24 TGC TCA TGC TGC TGC TGC TGC TGC
181646 ATT * 7 19/21 ATT ATT ATT ATT ATT TGT ATT
182407 TGG * 8 23/24 TGG TGG TGG TGG TGG TGG TGG TGA
-----------------------------------------------------------------------------------------
Total sequence length......................... 226471
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 2 2 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 3 2 1 0 0 0 0 0 0 0 0 0 0
TCA 1 0 1 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGC 1 0 1 0 0 0 0 0 0 0 0 0 0
CGG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 2 TAA + 1 ATT + 0 TTA + 0 TAT = 3
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 1 GTT + 0 TTG + 0 TGT = 1
1 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 1 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 1
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 3 TGC = 3
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 1 GGT + 0 GTG + 1 TGG = 2
1 GGC + 0 GCG + 1 CGG + 0 GCC + 0 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7301501|gb|AE003758.1|AE003758 Drosophila melanogaster genomic scaffold 142000013386035 section 83 of 105, complete sequence
Position Repeat Coverage Repeat
6251 CCA * 7 19/21 CCA CCA CCA TCA CCA TCA CCA
6536 CAG * 7 19/21 CAG CAG CAG GAG CAG CAG AAG
11784 CTA * 14 38/42 CTA TTA ATA CTA CTA CTA CTA CTA CTA CTA CTA CTA GTA CTC
24086 ACG * 7 19/21 ACG ACT ACG ACG ATG ACG ACG
29305 ATA * 14 38/42 ATA ATA ATA ATA ATA ATA ATA ATG ATA ATG ATA ATG ATA AAA
41585 TGT * 17 46/51 TGT TGT TGT TGT TGT TGT TGT TGT TCT GGT TGT TGT TGT TGC TGT GGT TGC
44450 CAT * 8 22/24 CAT CAT CAT CAT CAT CAT CAC CAC
45447 CAG * 7 19/21 CAG GAG CAG GAG CAG CAG CAG
55775 TGC * 8 22/24 TGC TGC TGC TGC TGG TGC TAC TGC
59336 GCT * 7 19/21 GCT GCT GCT GCT GCT GTT GGT
76192 CAG * 7 19/21 CAG CAG CAG TAG CAG CAG CAA
77260 CTC * 7 19/21 CTC CTC CTC CTC CTC ATC ATC
88916 GCT * 7 19/21 GCT GCT GCT GCT GCT GTT GTT
90260 CAT * 8 22/24 CAT CAT CAT CAT CAT CAT CCT CGT
91267 CAG * 9 25/27 CAG CAG CAG CAG CAG CAG CAG CAG CTC
92697 GAT * 8 22/24 GAT GAT GGT GAT GAT GAT GAT GCT
93310 TAA * 7 19/21 TAA TAA TAA TAA TAA AAA AAA
109656 ACA * 15 41/45 ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA GCA GCA GCA GCA
120674 TCG * 7 19/21 TCG TCT TCG TCG TCG TTG TCG
148007 CCA * 8 22/24 CCA CCA CCA TCA CCA CCA ACA CCA
149376 CCT * 10 28/30 CCT CCT CCT CCA CCT CCT CCT CCT CCT GCT
220518 AGC * 7 19/21 AGC AGC AAC AAC AGC AGC AGC
220574 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 225036
Total number of repeats detected.............. 23
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 1 0 0 1 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 0 0 1 0 0 0 0 0 0 0 0 0
ACG 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 0 0 0 1 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 5 5 0 0 0 0 0 0 0 0 0 0 0
CTA 1 0 0 1 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 2 2 0 0 0 0 0 0 0 0 0 0 0
CCT 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 1 TAA + 0 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 0 CAA + 0 GTT + 0 TTG + 1 TGT = 2
0 ATG + 0 TGA + 1 GAT + 2 CAT + 0 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 1 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 1 CCT + 1 CTC + 0 TCC = 2
1 AGC + 0 GCA + 5 CAG + 2 GCT + 0 CTG + 1 TGC = 9
1 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 1 TCG = 2
0 ACC + 2 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7301475|gb|AE003757.1|AE003757 Drosophila melanogaster genomic scaffold 142000013386035 section 82 of 105, complete sequence
Position Repeat Coverage Repeat
683 TAG * 8 22/24 TAG TAG TAG TAG AAG TCG TAG TAG
1619 AGC * 10 27/30 AGC AGC AGC AGG TGC AGC AGC AGC AGC AAC
6336 AAG * 7 19/21 AAG AAG CAG AAG AAA AAG AAG
6446 CAC * 7 19/21 CAC AAC CAC CAC CAC GAC CAC
6586 GCA * 8 22/24 GCA GTA GCA GCA GCA GCA ACA GCA
7572 AAT * 7 20/21 AAT AAT AAT AAT AAT AAT AGT
26581 TTG * 7 19/21 TTG TTG TTG TTG TTG TTG CGG
31980 TTG * 7 19/21 TTG TTG TTG TTG TTG TTG CGG
42623 CAG * 8 22/24 CAG CAA CAG CAG CAG CAG CAG CTG
61065 AGC * 10 27/30 AGC AGC AGC AGC AAC AGC AAC AGC AGC AGG
65995 CTG * 7 20/21 CTG CTG CTG CAG CTG CTG CTG
66021 GCT * 7 19/21 GCT GCG TCT GCT GCT GCT GCT
75353 TGC * 7 19/21 TGC TGC TGC TGG TGC TGT TGC
90278 ATG * 8 22/24 ATG ATG ATA ATG ATA ATG ATG ATG
124510 TGC * 7 19/21 TGC TGC TCC TGC TCC TGC TGC
133986 GTG * 8 22/24 GTG ATG GTG GTG GTG TTG GTG GTG
136587 ACA * 8 24/24 ACA ACA ACA ACA ACA ACA ACA ACA
149622 GGC * 7 19/21 GGC GGC GGC GGC GGC GTC GAC
175438 ACT * 7 19/21 ACT ACT ACT ACT ACT ACT GCA
183228 GCA * 8 22/24 GCA GCA GCA GCA ACA GCA ACA GCA
183347 TGA * 15 42/45 TGA TGA CGA TGA TGA TGC TGA TGA TGA CGA TGA TGA TGA TGA TGA
-----------------------------------------------------------------------------------------
Total sequence length......................... 191851
Total number of repeats detected.............. 21
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 0 2 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
ACT 1 1 0 0 0 0 0 0 0 0 0 0 0
TAG 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGA 1 0 0 1 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
1 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 1
0 AAC + 1 ACA + 0 CAA + 0 GTT + 2 TTG + 0 TGT = 3
1 ATG + 1 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 1 TAG + 1 ACT + 0 CTA + 0 TAC = 2
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
2 AGC + 2 GCA + 1 CAG + 1 GCT + 1 CTG + 2 TGC = 9
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 1 CAC + 0 GGT + 1 GTG + 0 TGG = 2
1 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7301458|gb|AE003756.1|AE003756 Drosophila melanogaster genomic scaffold 142000013386035 section 81 of 105, complete sequence
Position Repeat Coverage Repeat
33758 CAG * 7 19/21 CAG CAG CAG CAG TAG GAG CAG
93670 ATC * 8 22/24 ATC ATC ACC ATC GTC ATC ATC ATC
94533 TGT * 11 30/33 TGT TGT TGT TGT TGT TGT TGC TGC TGT TGT TGC
117715 CCA * 7 19/21 CCA CCA CGA CCA CCA CCA CCG
117738 TCC * 9 26/27 TCC TCC TCC TCC TCC TCC TCC TCC TCG
134096 CTG * 8 22/24 CTG CTG CCG TTG CTG CTG CTG CTG
141432 CTG * 8 22/24 CTG TTG CTG CTG CTG CTG CTG ATG
153480 AAT * 7 19/21 AAT AAT AAT AAT AAT AAT GAA
161021 CAA * 10 27/30 CAA CAA TAA CAA CTA CAA CAA CAA CAA CAT
161520 GCA * 8 22/24 GCA GCA GCG GCG GCA GCA GCA GCA
172333 AGC * 7 19/21 AGC AGC AAC AAC AGC AGC AGC
172389 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CAA
189760 GCA * 7 19/21 GCA ACA GCA ACA GCA GCA GCA
189917 CAA * 7 19/21 CAA CAG CAA CAA CAA TAA CAA
190107 CAA * 7 19/21 CAA CAA CAA CAA CAA CAA AGA
190536 TTG * 7 19/21 TTG TTG CTT TTG TTG TTG TTG
194179 ATA * 7 19/21 ATA ATA ATA ATA ATA ATG ATG
195216 CAG * 7 19/21 CAG CAG CGG CGG CAG CAG CAG
227625 AGC * 8 22/24 AGC AGC AAC AGC AAC AGC AGC AGC
242046 GTT * 8 22/24 GTT GTT GTT GTT GTG GTT ATT GTT
250565 AGC * 7 19/21 AGC AAC AGC AAC AGC AGC AGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 256242
Total number of repeats detected.............. 21
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 3 3 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 0 1 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 3 2 1 0 0 0 0 0 0 0 0 0 0
CAG 3 3 0 0 0 0 0 0 0 0 0 0 0
CTG 2 2 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 3 CAA + 1 GTT + 1 TTG + 1 TGT = 6
0 ATG + 0 TGA + 0 GAT + 0 CAT + 1 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 1 TCC = 1
3 AGC + 2 GCA + 3 CAG + 0 GCT + 2 CTG + 0 TGC = 10
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 1 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7301445|gb|AE003755.1|AE003755 Drosophila melanogaster genomic scaffold 142000013386035 section 80 of 105, complete sequence
Position Repeat Coverage Repeat
118582 AGC * 8 22/24 AGC AGC AGT AGC ACC AGC AGC AGC
118720 CAG * 7 19/21 CAG CAG CAA CAA CAG CAG CAG
120911 CAG * 7 19/21 CAG CGG CAG CAG CAG CAG CAA
143494 TAA * 7 19/21 TAA TAA TAA TAA TAA TGG TAA
148900 TAC * 7 19/21 TAC TAC TAC TAC TAC TAC GAA
213385 ATC * 8 22/24 ATC ATC ATC ACA ATC ATC ATC ATC
213409 GTC * 9 26/27 GTC GCC GTC GTC GTC GTC GTC GTC GTC
219999 AGC * 7 19/21 AGC AGC AGC AGA AGC AGT AGC
223939 GAT * 7 19/21 GAT GAT AAT GAT GAT GAT GAC
-----------------------------------------------------------------------------------------
Total sequence length......................... 226763
Total number of repeats detected.............. 9
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 1 GAT + 0 CAT + 1 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 1 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
2 AGC + 0 GCA + 2 CAG + 0 GCT + 0 CTG + 0 TGC = 4
0 ACG + 0 CGA + 0 GAC + 0 CGT + 1 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7301396|gb|AE003754.1|AE003754 Drosophila melanogaster genomic scaffold 142000013386035 section 79 of 105, complete sequence
Position Repeat Coverage Repeat
1858 GCA * 7 19/21 GCA GCG GCA GCA GCA GCA GGA
6592 GGC * 7 20/21 GGC GGC GGC GGC GGT GGC GGC
6619 GGA * 8 22/24 GGA GGA AGA GGA GGT GGA GGA GGA
6660 GCA * 10 27/30 GCA GCA GCC TCA GCA GCA GCA GCA GCA ACA
46564 AGC * 7 19/21 AGC AGC AGC AGC AGT AGC AGT
68173 GCT * 8 22/24 GCT GCT GCT GCT GCT GCG GCT TCT
68226 TGC * 8 22/24 TGC TGC TGC CGC TGT TGC TGC TGC
72138 CAG * 7 19/21 CAG CTG CAC CAG CAG CAG CAG
91119 CAC * 8 22/24 CAC CAC CAT CAC CAC CAC CAC CAT
92661 GAG * 7 20/21 GAG GAA GAG GAG GAG GAG GAG
92841 GAG * 7 19/21 GAG GAG GAG GAG CAG GAG GAA
104233 ACT * 9 25/27 ACT TCT ACT ACT ACT ACT ACT ACT ACG
108390 TGC * 8 22/24 TGC TGC TGC TGC TTC TGC TGC TGA
118141 TGG * 8 22/24 TGG TTG TGG TAG TGG TGG TGG TGG
118312 ACG * 7 20/21 ACG ACG ACG ACG ATG ACG ACG
123196 GAG * 7 19/21 GAG GAG CAG GAG GAC GAG GAG
128866 TGC * 7 19/21 TGC TGC TGC TGC TGC TAC TGT
129116 CTG * 9 26/27 CTG CTG CTG CTG CTG TTG CTG CTG CTG
134421 CAG * 7 19/21 CAG CAG CAG CAG CAA CAG CAA
141070 GAT * 7 19/21 GAT GAT GAT GGT GAT GGT GAT
141746 GCA * 7 20/21 GCA GCA GCC GCA GCA GCA GCA
144284 GCA * 11 30/33 GCA GCA GCG GCA GGA GCA GCA GCA GCA GCA ACA
158424 GTT * 7 19/21 GTT GTT GTT ATT GCT GTT GTT
160661 AAC * 7 19/21 AAC AAC AAC AAA AAC AAC AGC
174686 TGC * 8 22/24 TGC TGC TGC CGC TGT TGC TGC TGC
186259 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC TGC CAC
195828 TGC * 9 25/27 TGC TGT TGC CGC TGC TGC TGC TGC TGC
197523 AAC * 7 19/21 AAC AGC AGC AAC AAC AAC AAC
197745 GCA * 7 19/21 GCA ACA GCA ACA GCA GCA GCA
207615 GCA * 7 19/21 GCA GCA GGA GCA GCA GCA TCA
208184 CTG * 7 19/21 CTG TTG CTG TTG CTG CTG CTG
208386 TGC * 7 19/21 TGC TGC AGA TGC TGC TGC TGC
208419 TGC * 7 20/21 TGC TGC TGC TGC TGC TGC TGG
214205 ACG * 7 19/21 ACG ATG ACG ACG ACG ACG ATG
-----------------------------------------------------------------------------------------
Total sequence length......................... 221822
Total number of repeats detected.............. 34
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 2 2 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACT 1 1 0 0 0 0 0 0 0 0 0 0 0
ACG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 8 8 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 3 3 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 6 4 2 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
2 AAC + 0 ACA + 0 CAA + 1 GTT + 0 TTG + 0 TGT = 3
0 ATG + 0 TGA + 1 GAT + 0 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 1 ACT + 0 CTA + 0 TAC = 1
0 AGG + 1 GGA + 3 GAG + 0 CCT + 0 CTC + 0 TCC = 4
1 AGC + 6 GCA + 2 CAG + 1 GCT + 2 CTG + 8 TGC = 20
2 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 2
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 1 TGG = 2
1 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7301360|gb|AE003753.1|AE003753 Drosophila melanogaster genomic scaffold 142000013386035 section 78 of 105, complete sequence
Position Repeat Coverage Repeat
1295 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CAA
43429 ATG * 7 19/21 ATG ATG ATG ATG GTG ATG ATA
77758 CTG * 9 25/27 CTG CTG CTG CTG CTG CTT CTG CTG TTG
154631 GCA * 8 23/24 GCA GCA GCA GCA GCA GCA GCA ACA
172074 AGC * 7 19/21 AGC AGC AAC AAC AGC AGC AGC
172130 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CAA
195174 CGC * 10 27/30 CGC CGC TGC TGC CGC CGC CGC CGC CGC TGC
202612 GCT * 8 22/24 GCT GCT GCT GCT ACT GCT GCT GTT
220649 TTG * 7 19/21 TTG CTG TTG TTG TTG TTG TCG
-----------------------------------------------------------------------------------------
Total sequence length......................... 226342
Total number of repeats detected.............. 9
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CGC 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 1 TTG + 0 TGT = 1
1 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 1 GCA + 2 CAG + 1 GCT + 1 CTG + 0 TGC = 6
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 1 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7301339|gb|AE003752.1|AE003752 Drosophila melanogaster genomic scaffold 142000013386035 section 77 of 105, complete sequence
Position Repeat Coverage Repeat
13853 GCA * 11 30/33 GCA GCA GCA GCA GCA AAA GCA GCA GCA GCA ACA
27402 TTG * 7 20/21 TTG TTG TTG TTG TCG TTG TTG
36198 CAA * 7 19/21 CAA CAA GAA CAA CAA CAA TAA
45671 CTC * 8 22/24 CTC CTC CTC CTC CTC CTC CTC TGC
83938 GGC * 8 22/24 GGC GGC GGC GGC AGC AGC GGC GGC
97479 TTA * 7 19/21 TTA TTA TTG TTA TTA TTG TTA
128061 ACT * 8 22/24 ACT ACT ACT ATT ACT ACA ACT ACT
164617 CAG * 8 22/24 CAG CAG CAG CAA CAG CAG CAG CAT
164860 GCC * 7 19/21 GCC GCT GCT GCC GCC GCC GCC
177975 CAG * 8 22/24 CAG CAG CAG CAG CAC GAG CAG CAG
178002 CAG * 7 19/21 CAG GAG CAG CAG CAG CAA CAG
178024 AGC * 10 27/30 AGC AGC AGC AGC AGC AGC AGC AGC ACG AGG
183731 CAG * 8 22/24 CAG GAA CAG CAG CAG CAG CAG CAG
217942 CTG * 7 19/21 CTG CTG CTG CTG CTG ATG ATG
218330 TGC * 9 25/27 TGC GGC TGC TGC TGC TGT TGC TGC TGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 225478
Total number of repeats detected.............. 15
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGC 1 0 1 0 0 0 0 0 0 0 0 0 0
ACT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 0 1 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 4 4 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 1 CAA + 0 GTT + 1 TTG + 0 TGT = 2
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 1 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 1
1 AGC + 1 GCA + 4 CAG + 0 GCT + 1 CTG + 1 TGC = 8
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
1 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7301280|gb|AE003751.1|AE003751 Drosophila melanogaster genomic scaffold 142000013386035 section 76 of 105, complete sequence
Position Repeat Coverage Repeat
1209 CTG * 7 19/21 CTG CTT CTG CTC CTG CTG CTG
2130 CCA * 7 19/21 CCA CCA CCA CCA CCA CCA TCC
23118 GCT * 10 27/30 GCT GCT GCT GCT GGT GCT GCT GCG GCT GAT
24466 GGA * 8 22/24 GGA GGA GGA GGA GGA GGT GGT GGA
87247 AGC * 7 19/21 AGC ATC AGC AGC AGC AAC AGC
186219 TGT * 10 27/30 TGT TGT TTT TGT TCT TGT TGT TGT TGT CGT
228651 TGC * 10 27/30 TGC TGC TGC TGC TGC TGC TAC TAC TGC TGT
231612 GCT * 7 19/21 GCT TCT ACT GCT GCT GCT GCT
232812 GTG * 7 19/21 GTG GTG GTG GTT GTG GTT GTG
232983 GTG * 7 19/21 GTG GTG GTG GTT GTG GTT GTG
233317 GTG * 7 19/21 GTG GTG GTG GTT GTG GTT GTG
233416 GTG * 7 19/21 GTG GTG GTG GTT GTG GTT GTG
233502 GGT * 8 22/24 GGT GGT TGT GGT CGT GGT GGT GGT
233656 GTG * 8 22/24 GTG GTG GTT GTG GTC GTG GTG GTG
233800 GTT * 11 30/33 GTT GTT GTT GTT GTT GTT GTT GAT GCT GGT GTT
-----------------------------------------------------------------------------------------
Total sequence length......................... 269518
Total number of repeats detected.............. 15
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 1 0 1 0 0 0 0 0 0 0 0 0 0
GTT 1 0 1 0 0 0 0 0 0 0 0 0 0
GTG 5 5 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 2 1 1 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 1 GTT + 0 TTG + 1 TGT = 2
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 1
1 AGC + 0 GCA + 0 CAG + 2 GCT + 1 CTG + 1 TGC = 5
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 1 CCA + 0 CAC + 1 GGT + 5 GTG + 0 TGG = 7
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7301241|gb|AE003750.1|AE003750 Drosophila melanogaster genomic scaffold 142000013386035 section 75 of 105, complete sequence
Position Repeat Coverage Repeat
1008 TGC * 7 19/21 TGC TGC TGC TGT TGC TGG TGC
5935 GTC * 7 19/21 GTC GTG GAC GTC GTC GTC GTC
5966 CTC * 8 22/24 CTC CTC CAC CTC CTG CTC CTC CTC
32068 CTG * 8 22/24 CTG CTG CTG CTG CTG CTG CTT CTA
33321 GAG * 12 33/36 GAG GAG GAG GAG GAG GAA GAG GAG GAG GAG GAA GAA
45111 CAG * 7 19/21 CAG CAG CAT CAG CAG CAG CAA
46479 GCA * 9 25/27 GCA AGA GCA GCA GCA GCA GCA GCA GCA
46531 CAT * 10 27/30 CAT CAT CAT CAT CAT CAT CAT CTT CGT CGT
67048 GTC * 8 22/24 GTC GTC GTC GTC GTC GTC GTC ATG
71814 GCA * 7 19/21 GCA GCA ACA GCA ACA GCA GCA
71908 CAT * 8 22/24 CAT CAT TAT CAT CAT CAT CAT CCT
82463 CAC * 7 19/21 CAC CAC GAG CAC CAC CAC CAC
90511 TGT * 8 22/24 TGT AGT TGT TGT TGT TGT TGA TGT
143246 AGC * 11 31/33 AGC AGC AGC AGC AGC AGC AGG AGC AGC ACC AGC
144411 CCA * 7 19/21 CCA CCA CCA CCA TCA CCA CCG
194597 GCA * 8 22/24 GCA GCA TCA GCA GCA GCA TCA GCA
194663 GCA * 7 19/21 GCA CCA GCA GCA GCA GCA ACA
222356 GCT * 7 20/21 GCT GCT GTT GCT GCT GCT GCT
223846 AGC * 7 19/21 AGC AGC GGC AGC AGC AGG AGC
225416 GCA * 8 22/24 GCA TCA GCA GCA GCA GCA GCA GAA
225451 AGC * 12 33/36 AGC AGC AGC AGG AGC AGC AGC AGC AGC AGC ATC CGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 227398
Total number of repeats detected.............. 21
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGC 3 1 2 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 0 1 0 0 0 0 0 0 0 0 0 0
GTC 2 2 0 0 0 0 0 0 0 0 0 0 0
GCA 5 5 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 2 1 1 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 1 TGT = 1
0 ATG + 0 TGA + 0 GAT + 2 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 0 CCT + 1 CTC + 0 TCC = 2
3 AGC + 5 GCA + 1 CAG + 1 GCT + 1 CTG + 1 TGC = 12
0 ACG + 0 CGA + 0 GAC + 0 CGT + 2 GTC + 0 TCG = 2
0 ACC + 1 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7301193|gb|AE003749.1|AE003749 Drosophila melanogaster genomic scaffold 142000013386035 section 74 of 105, complete sequence
Position Repeat Coverage Repeat
6539 AGC * 7 19/21 AGC AAC AGC AGC AGC ATC AGC
6595 CAG * 7 20/21 CAG CAG CAG CAA CAG CAG CAG
6654 GCA * 7 19/21 GCA GCA GCA ACA CCA GCA GCA
6744 GCA * 10 28/30 GCA GCA GCT GCA ACA GCA GCA GCA GCA GCA
16012 CCA * 8 22/24 CCA CCA CCG CCA TCA CCA CCA CCA
16041 ACC * 7 20/21 ACC ACC ACC ACC ACC ACC ACA
16176 CAG * 7 19/21 CAG TAG CAG CAA CAG CAG CAG
23201 CGG * 8 22/24 CGG CGG CGG CGG CGG CGG AGG AGG
32039 TGA * 7 19/21 TGA TGA TGA TGA TGC TGA TGC
51616 GCT * 9 25/27 GCT GCT GCT GCT GCT ACT GCT GCT GCG
57957 TCT * 7 19/21 TCT TCT GCT TCT TCT TCT GCT
59525 AGC * 8 22/24 AGC AGC AGC AAC AGC AGC AGC GGC
86031 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CAA
86053 AGC * 14 38/42 AGC AAC AGC AGC AGC AGC AGC AGC AGC AGC AAC AAC AGC AAC
90189 CTG * 8 22/24 CTG CTG CGG ATG CTG CTG CTG CTG
103433 CCT * 7 19/21 CCT CCT CCT CCT CCT CTT CGT
111710 GGC * 7 19/21 GGC AGC GGT GGC GGC GGC GGC
130139 AAT * 10 27/30 AAT AAT AAT AAT AAT AAT AAT AAT AAA ATA
136656 AAT * 8 22/24 AAT AAT AAT AAT AAT AAT AAC AAG
141225 TAA * 7 19/21 TAA TAC TGA TAA TAA TAA TAA
181521 TCA * 10 27/30 TCA TCA TCA TCA TCA TCA TCA TCG TCA TTC
188167 TGC * 7 19/21 TGC TAG TGC TGC TGC TGC TGC
197790 CAG * 8 22/24 CAG CAG CAG AAG CTG CAG CAG CAG
200400 GAT * 8 22/24 GAT TGT GAT GAT GAT GAT GAT GAT
200743 GCA * 12 34/36 GCA GCA GCG GCA GCA GCA GCA GCA GCA GCA GCA TCA
-----------------------------------------------------------------------------------------
Total sequence length......................... 228472
Total number of repeats detected.............. 25
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 2 1 1 0 0 0 0 0 0 0 0 0 0
AGC 3 2 0 1 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 1 0 1 0 0 0 0 0 0 0 0 0 0
TCT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 3 1 2 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 4 4 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CGG 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
2 AAT + 0 ATA + 1 TAA + 0 ATT + 0 TTA + 0 TAT = 3
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 1 TCT = 1
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 1 TGA + 1 GAT + 0 CAT + 0 ATC + 1 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 1 CCT + 0 CTC + 0 TCC = 1
3 AGC + 3 GCA + 4 CAG + 1 GCT + 1 CTG + 1 TGC = 13
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
1 ACC + 1 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 2
1 GGC + 0 GCG + 1 CGG + 0 GCC + 0 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7301169|gb|AE003748.1|AE003748 Drosophila melanogaster genomic scaffold 142000013386035 section 73 of 105, complete sequence
Position Repeat Coverage Repeat
9716 AAT * 7 19/21 AAT AAT AAT CAT AAT AAT AAC
11504 TTG * 7 19/21 TTG TTT TAG TTG TTG TTG TTG
66898 ACA * 7 19/21 ACA ACA ACA ACA GCA ACT ACA
108792 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC TGA AGC
128653 GCA * 7 19/21 GCA GCA GCA CCA GCA GCA ACA
131362 CTT * 11 30/33 CTT CTT CTC CTT CTT TTT CTT CTT CTT CTC CTT
137418 GCA * 7 19/21 GCA TCA GCA TCA GCA GCA GCA
139827 TTG * 7 20/21 TTG TTG TTG TTG TTG TTG TTA
140951 ATG * 8 22/24 ATG ATG ATC ATA ATG ATG ATG ATG
148510 GTA * 12 34/36 GTA GTA GTA GTA GTA GTA GTA GTA GTA GTA GTA GCC
151466 GCA * 7 19/21 GCA GCA GCA GCA AAA GCA GCA
152579 CTT * 7 19/21 CTT CTT CTT CTT CTT CTG CGT
153827 CAA * 7 19/21 CAA CAA CAG CAA CAA CAG CAA
162711 CAG * 14 38/42 CAG CAG CAG CAG CAG CAG CAG AAG CAG CAA CAG CAA CAG CAA
166264 GCA * 8 22/24 GCA GCA GCA TCA GCA GCA GCA GAA
172417 TCA * 7 19/21 TCA TCA TCA TCA TCA TCT TCC
184832 GCT * 8 22/24 GCT GCT GCT GTT GTT GCT GCT GCT
191064 GGC * 7 19/21 GGC GGC GGC GGT GGC GGC TGC
203489 CAG * 7 19/21 CAG CAG CAG CAG CAG CCG CCG
213372 ATG * 7 19/21 ATG ATG AGC ATG ATG ATG ATG
229487 CAA * 8 23/24 CAA CAA CAC CAA CAA CAA CAA CAA
230587 AAT * 12 34/36 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT ATT GAT
240350 TAC * 11 31/33 TAC TAC TAC TTC TAC TAC TAC TAC TAC TAC AAC
-----------------------------------------------------------------------------------------
Total sequence length......................... 256636
Total number of repeats detected.............. 23
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 2 1 1 0 0 0 0 0 0 0 0 0 0
ATG 2 2 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAC 1 0 1 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GTA 1 0 1 0 0 0 0 0 0 0 0 0 0
GGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 4 4 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 2 1 0 1 0 0 0 0 0 0 0 0 0
CTT 2 1 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
2 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 2 CTT + 0 TTC + 0 TCT = 2
0 AAC + 1 ACA + 2 CAA + 0 GTT + 2 TTG + 0 TGT = 5
2 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 1 TCA = 3
0 AGT + 1 GTA + 0 TAG + 0 ACT + 0 CTA + 1 TAC = 2
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 4 GCA + 2 CAG + 1 GCT + 0 CTG + 1 TGC = 8
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
1 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7301134|gb|AE003747.1|AE003747 Drosophila melanogaster genomic scaffold 142000013386035 section 72 of 105, complete sequence
Position Repeat Coverage Repeat
14405 GAT * 8 22/24 GAT GAT GAT GAT AAT GAT GAT GTT
34576 CCT * 10 28/30 CCT CCT CCT CCT CCT CCT CCT CCT CCA CCG
35388 CAT * 8 22/24 CAT CCT CAA CAT CAT CAT CAT CAT
64786 AGC * 8 22/24 AGC AAT AGC AGC AGC AGC AGC AGC
76764 GAT * 11 30/33 GAT GAT GAT GAT GAC GAC GAT GAT GAT GAT GAG
76926 GAG * 7 19/21 GAG GAG GAA GAG GAG GAG GAA
77613 GAG * 7 19/21 GAG GAG GAG GAG GAA GAG GAA
77845 GAC * 7 20/21 GAC GAC GAT GAC GAC GAC GAC
101619 GCA * 7 19/21 GCA GCA GCG GCG GCA GCA GCA
122651 GAG * 9 25/27 GAG GAG GAG GAG GAG GAG GAG GAG CCG
141797 CCA * 9 25/27 CCA CCA CCA CCT CCT CCA CCA CCA CCA
152340 CTG * 7 20/21 CTG ATG CTG CTG CTG CTG CTG
202947 TGC * 7 19/21 TGC TGC TGA TGT TGC TGC TGC
203173 TGC * 10 28/30 TGC TGC TGC TGC TGT TGC TGC TGC TGT TGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 204469
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 1 1 0 0 0 0 0 0 0 0 0 0
GAT 2 1 1 0 0 0 0 0 0 0 0 0 0
GAG 3 3 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 2 GAT + 1 CAT + 0 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 3 GAG + 1 CCT + 0 CTC + 0 TCC = 4
1 AGC + 1 GCA + 0 CAG + 0 GCT + 1 CTG + 2 TGC = 5
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 1 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7301086|gb|AE003746.1|AE003746 Drosophila melanogaster genomic scaffold 142000013386035 section 71 of 105, complete sequence
Position Repeat Coverage Repeat
3181 AGC * 10 28/30 AGC ATC AGC AGC AGC AGC AGC ACC AGC AGC
48988 TCA * 11 31/33 TCA TCA TCA TCA TCA ACA TCA TCA TCA TCA TCC
52111 AAC * 12 34/36 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AGG
65328 GTT * 10 27/30 GTT ATC GTT GTT GTT GTT GTT GTT GTT TTT
93051 TCC * 7 19/21 TCC TTG TCC TCC TCC TCC TCC
97639 GGA * 8 22/24 GGA GGA GGA GGA GGA GGA GGA GTG
164957 ATC * 7 19/21 ATC CTC ATC ATC ATC GTC ATC
175476 CGT * 7 19/21 CGT CGC CGT CGT CGT CGT CAT
178711 TCA * 7 20/21 TCA TCA TCA TCA TCA TCA TCG
182961 ATC * 7 20/21 ATC ATA ATC ATC ATC ATC ATC
190216 GAT * 11 30/33 GAT GAT GAT GAT GGT GGT GAT GAT GAT GAT AAT
190801 CAA * 12 33/36 CAA GAA CCA CAA CAA CAA CAA CAA CAA CAA CAA CGA
193914 GGC * 7 19/21 GGC GGT GGC GGC GGC GGC GGT
202495 TGT * 8 22/24 TGT TGT TGT TGT TGT ACT TGT TGT
209095 AAC * 8 22/24 AAC AAC AAC AAC AAC ACC AAT AAC
215833 GCA * 12 33/36 GCA GCA GCA GCA GCA ACA ACA GCA GCA GCA GCA ACA
215870 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CAA
216067 GCA * 7 19/21 GCA ACA GCA GCA GCA GCA GCT
216666 AGC * 7 19/21 AGC GGC CGC AGC AGC AGC AGC
216924 GCA * 7 19/21 GCA GCG GCT GCA GCA GCA GCA
217679 AGA * 7 19/21 AGA AGG CGA AGA AGA AGA AGA
221012 AAG * 8 22/24 AAG AAG AAG AAG AAG ATG GAG AAG
222983 GCA * 7 19/21 GCA GCA GGA GCA GCA GCA GCT
223568 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CCG
223901 GCC * 7 19/21 GCC GCA GCT GCC GCC GCC GCC
224580 AGC * 8 22/24 AGC AGC AGC CGC AGC AGC AGC AGT
224632 GCA * 7 19/21 GCA GCA GCA GCA GCA GCA TGA
-----------------------------------------------------------------------------------------
Total sequence length......................... 226318
Total number of repeats detected.............. 27
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 2 1 1 0 0 0 0 0 0 0 0 0 0
ATC 2 2 0 0 0 0 0 0 0 0 0 0 0
AGA 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 3 2 1 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 2 1 1 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 0 1 0 0 0 0 0 0 0 0 0 0
GTT 1 0 1 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 5 4 1 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 0 1 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CGT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
1 AAG + 1 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 2
2 AAC + 0 ACA + 1 CAA + 1 GTT + 0 TTG + 1 TGT = 5
0 ATG + 0 TGA + 1 GAT + 0 CAT + 2 ATC + 2 TCA = 5
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 0 GAG + 0 CCT + 0 CTC + 1 TCC = 2
3 AGC + 5 GCA + 2 CAG + 0 GCT + 0 CTG + 0 TGC = 10
0 ACG + 0 CGA + 0 GAC + 1 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
1 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7301057|gb|AE003745.1|AE003745 Drosophila melanogaster genomic scaffold 142000013386035 section 70 of 105, complete sequence
Position Repeat Coverage Repeat
12865 CTG * 8 22/24 CTG CTG CTG CTC CTG CTG TTG CTG
21626 TGT * 10 27/30 TGT TGT TGT TGT TGT TGT TGT TGT TGC CGG
42129 AAT * 7 19/21 AAT AAT AAT AAT AAA AAA AAT
61897 TAT * 7 19/21 TAT TAC TAT TAT TAT TAT TTT
67619 CAT * 7 19/21 CAT GAT CAT CAT CTT CAT CAT
70161 AGC * 12 33/36 AGC AGC AGC AGC AGC AGC AGC AAC AGC AAC AAC AGC
70197 AAC * 8 22/24 AAC AAC AGC AAC AAC AGC AAC AAC
77494 ATC * 8 23/24 ATC ATC ATC ATC ATC ATC AAC ATC
82821 ACA * 7 19/21 ACA ACA ACA AGT ACA ACA ACA
82869 AAC * 8 22/24 AAC AAC AAT AAC AAA AAC AAC AAC
83184 AAC * 8 22/24 AAC AAC AAC AAC AAC AAC ATC AGC
83706 GTT * 7 19/21 GTT GTT GTT GTT GTT GCT GCT
91466 TGC * 14 38/42 TGC TGC TGC TGT TGC TGC TGC TGC TGC TGC TGA TAC TGC TGT
91772 ATG * 7 19/21 ATG ACG ATG ATG ATG ATT ATG
95506 TGC * 8 22/24 TGC TGC TGC TGC TGT TGC TGC TGG
101335 TGC * 8 22/24 TGC TGC TGC TGT GGC TGC TGC TGC
103213 GGA * 8 22/24 GGA GGC GGA GGA GGA GGA GGA GAA
108947 AAC * 8 23/24 AAC AAC AAC AAC AAC AAC AAC AGC
112086 TCA * 9 26/27 TCA TCA GCA TCA TCA TCA TCA TCA TCA
116706 TGC * 7 19/21 TGC TGT TGT TGC TGC TGC TGC
116800 GCT * 7 19/21 GCT GCT GCT GTT GCT GCT GCA
116898 TGC * 10 27/30 TGC TGG TGT TGC TGC TGC TGC TGC TGC TGA
117075 TGC * 7 19/21 TGC TGC TGC TGA TGT TGC TGC
159860 AGC * 7 19/21 AGC AGC AGC GCC AGC AGC AGC
162009 GCT * 7 19/21 GCT GCT GCT GCT GCT GCG ACT
162539 CAG * 7 19/21 CAG GAG CAG CAA CAG CAG CAG
177067 GCA * 7 19/21 GCA GCA GCA ACT GCA GCA GCA
177095 CAG * 7 19/21 CAG CAG CAG CAG CAA CAG CTG
197049 CTG * 7 19/21 CTG CTG CTG CTG CAT CTG CTG
206097 AGC * 8 23/24 AGC AAC AGC AGC AGC AGC AGC AGC
215515 AAC * 7 20/21 AAC AAC AAA AAC AAC AAC AAC
-----------------------------------------------------------------------------------------
Total sequence length......................... 219341
Total number of repeats detected.............. 31
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 5 5 0 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 3 2 1 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 6 4 1 1 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CTG 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
5 AAC + 1 ACA + 0 CAA + 1 GTT + 0 TTG + 1 TGT = 8
1 ATG + 0 TGA + 0 GAT + 1 CAT + 1 ATC + 1 TCA = 4
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 1
3 AGC + 1 GCA + 2 CAG + 2 GCT + 2 CTG + 6 TGC = 16
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7301010|gb|AE003744.1|AE003744 Drosophila melanogaster genomic scaffold 142000013386035 section 69 of 105, complete sequence
Position Repeat Coverage Repeat
9253 GAG * 11 30/33 GAG GAG GAG GAG GAC GAG GAC GAG GAG GAG CAG
44676 ACA * 7 20/21 ACA ACA ACA ACG ACA ACA ACA
62626 TGC * 7 19/21 TGC TGC TGC TGT TGC TGT TGC
77772 TGC * 7 19/21 TGC TGC TGT TGC TGT TGC TGC
119601 AAT * 7 20/21 AAT AAT AAT AAT AAT AAT ATT
237934 GCA * 7 19/21 GCA GCA GCA GAA GCA GGA GCA
-----------------------------------------------------------------------------------------
Total sequence length......................... 239327
Total number of repeats detected.............. 6
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
GAG 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 1
0 AGC + 1 GCA + 0 CAG + 0 GCT + 0 CTG + 2 TGC = 3
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7300988|gb|AE003743.1|AE003743 Drosophila melanogaster genomic scaffold 142000013386035 section 68 of 105, complete sequence
Position Repeat Coverage Repeat
20905 CAG * 8 22/24 CAG CAG CAG CAG ATG CAG CAG CAG
27888 ATA * 10 27/30 ATA GTA ATA ATA ATA ATA AAA ATA ATA ATG
43212 AGC * 7 19/21 AGC AGC ACC AGC AGC AGC TGC
44482 AAT * 8 24/24 AAT AAT AAT AAT AAT AAT AAT AAT
45574 TGC * 27 75/81 TGC TGC TGC TGC TGC TGC TGC TGC TGT TGC TGA TGT TGC TGC TGT TGC TGC TGT TGC TGC TGC TGC TGC TGC TGC TGC TCC
46273 TTG * 7 19/21 TTG TTG TTG TTT TTG TTT TTG
52332 CAG * 12 34/36 CAG CAG CAG CAG CAG CAA CAG CAG CAG CAG GAG CAG
61309 TGC * 9 25/27 TGC AGT TGC TGC TGC TGC TGC TGC TGC
64700 TGC * 11 31/33 TGC TGC TGC TGC TGT TGC TGT TGC TGC TGC TGC
64742 TGC * 8 22/24 TGC TGC TGG TGT TGC TGC TGC TGC
65329 TGC * 7 19/21 TGC TGT TGC TGC TGC TGA TGC
71152 GCT * 7 19/21 GCT GCC GCC GCT GCT GCT GCT
71549 ACC * 7 19/21 ACC ACC ACC ACC ACC GCC GCC
72929 GCA * 7 19/21 GCA GCA GCA GCG GCA TCA GCA
80991 CAA * 7 19/21 CAA CAA CAG GAA CAA CAA CAA
92751 GCA * 8 22/24 GCA GCA ACA GCA TCA GCA GCA GCA
105484 ATT * 7 19/21 ATT ATT ATT ATT GTT ATT GTT
114197 TGA * 7 19/21 TGA TGA CGA TGA TGA TGA TGG
121616 TTG * 7 20/21 TTG TTG ATG TTG TTG TTG TTG
125362 GCA * 7 19/21 GCA GGA GAA GCA GCA GCA GCA
-----------------------------------------------------------------------------------------
Total sequence length......................... 217674
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 0 1 0 0 0 0 0 0 0 0 0 0
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 5 3 1 0 0 0 0 1 0 0 0 0 0
GCA 3 3 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 1 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 1 ATA + 0 TAA + 1 ATT + 0 TTA + 0 TAT = 3
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 1 CAA + 0 GTT + 2 TTG + 0 TGT = 3
0 ATG + 1 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 3 GCA + 2 CAG + 1 GCT + 0 CTG + 5 TGC = 12
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
1 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7300960|gb|AE003742.1|AE003742 Drosophila melanogaster genomic scaffold 142000013386035 section 67 of 105, complete sequence
Position Repeat Coverage Repeat
16896 TGC * 9 25/27 TGC CGC TGC TGC TGC CGC TGC TGC TGC
17478 TGT * 7 19/21 TGT TGT TGT TGT TTT TGT TGC
17551 CAA * 10 28/30 CAA CAG CAA CAA CAA CAA CAA CAA CAA CAC
33743 TTG * 7 19/21 TTG TTG GTG TTG TTG TTG TTC
33782 GTT * 8 23/24 GTT GTT GTT GTT GTT GTT GTT GTG
54707 CTG * 8 22/24 CTG CTG CTG CTG CTG CTG CGA CTG
105514 CCT * 10 27/30 CCT CCT CCT CCT CCT CCT CCT CCT CCG CTG
105641 CCT * 8 22/24 CCT CCT CCT CCT CCT CCT CCT TCG
122873 AAC * 7 19/21 AAC AAC AAC AAG AAC AAC AAA
141028 AGC * 7 19/21 AGC AGC AGC AGT AGC AGC AAC
154148 TGT * 8 22/24 TGT TGT TGT TGC TGT TGT TGA TGT
157070 TGC * 8 22/24 TGC TGC TGT TGC TGC TGC TGC TGA
178995 TGT * 9 25/27 TGT TGT TGT TGT TGT TGC TGC TGT TGT
180685 TGC * 7 19/21 TGC TGC TGC TGC TGT TGT TGC
180727 TGC * 9 25/27 TGC TGC TGC TGC TGC AGC TGC TGT TGC
180814 TGA * 9 26/27 TGA TGA TGA TGA TGA TGA TGA TGC TGA
180920 TGC * 11 30/33 TGC TGC TGT TGC TGC TGC TGC TGC TGC TGG TGA
186787 ACA * 10 27/30 ACA ACT ACA ACA ATA ACA ACA ACA ACA ACG
187003 CAA * 7 19/21 CAA CAA AAA CAA CAA CAA CAC
189198 ACA * 7 19/21 ACA ACA ACA AGA ACA ACA AAA
193352 CAC * 8 23/24 CAC CAC CAC CAC CAC CAC CAC CAT
194863 GAT * 12 33/36 GAT GAT CAT AAT GAT GAT GAT GAT GAT GAC GAT GAT
195783 GAT * 8 23/24 GAT GAT GAT GAT GAT GAT GAT GAA
209685 AAC * 7 19/21 AAC AAC AAC AGC AAT AAC AAC
209811 GAT * 7 19/21 GAT GAT GCT GAT GAT TAT GAT
211179 GCA * 10 28/30 GCA GCA TCC GCA GCA GCA GCA GCA GCA GCA
212840 TGA * 8 22/24 TGA TGA TGA TGA TAA TGA TGA CGA
223233 CAG * 10 27/30 CAG CGG CAG CAG CAG CAG CAG CAG CGG CGG
-----------------------------------------------------------------------------------------
Total sequence length......................... 233673
Total number of repeats detected.............. 28
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 2 2 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 2 1 1 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 2 2 0 0 0 0 0 0 0 0 0 0 0
TGT 3 3 0 0 0 0 0 0 0 0 0 0 0
TGC 5 4 1 0 0 0 0 0 0 0 0 0 0
GAT 3 2 1 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 0 1 0 0 0 0 0 0 0 0 0 0
CAA 2 1 1 0 0 0 0 0 0 0 0 0 0
CAG 1 0 1 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 2 1 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
2 AAC + 2 ACA + 2 CAA + 1 GTT + 1 TTG + 3 TGT = 11
0 ATG + 2 TGA + 3 GAT + 0 CAT + 0 ATC + 0 TCA = 5
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 2 CCT + 0 CTC + 0 TCC = 2
1 AGC + 1 GCA + 1 CAG + 0 GCT + 1 CTG + 5 TGC = 9
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7300931|gb|AE003741.1|AE003741 Drosophila melanogaster genomic scaffold 142000013386035 section 66 of 105, complete sequence
Position Repeat Coverage Repeat
12140 AGG * 8 22/24 AGG AGG TGG AGG AGG AGG ATG AGG
29834 TTA * 12 33/36 TTA TTA TTA TTA TTG CTA TTA TTA TTA TTA TTA TTT
37829 CAG * 9 25/27 CAG CAG CAG GAG CAG CAG CAG CAG CAA
110987 TGG * 7 19/21 TGG TGT TGG TGC TGG TGG TGG
111272 GCT * 7 19/21 GCT GCT GTT GCT GCT GCA GCT
119282 GAT * 7 19/21 GAT GAT GAT GAC TAT GAT GAT
120888 GCT * 8 22/24 GCT GCT GCC GCT CCT GCT GCT GCT
135880 TGC * 8 22/24 TGC TGC TGC TCC TGC TGA TGC TGC
141902 GCT * 15 41/45 GCT GAT GCT GCT TCT GCT GCT GCT GCT GCT GTT GCT GCT GCT GTT
146808 GTT * 7 19/21 GTT GTG GTT GTT GTT CTT GTT
160874 GCA * 7 19/21 GCA GCA GCA GCA GCA GCA GTT
179701 TGC * 8 22/24 TGC TGC AGC TGC TGC TGC TGC TGT
179725 TGT * 7 19/21 TGT TGT TGT TGT TGT TGC TGC
192276 AAT * 8 22/24 AAT CAT AAT AAT AAT AAT ATT AAT
195865 CTG * 10 27/30 CTG CTG CTG CTG CTG CTG CTG TTG TTG TTG
195896 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC TGG TCC
201182 GCT * 7 20/21 GCT GCT GTT GCT GCT GCT GCT
206288 GCA * 7 19/21 GCA ACA GCA GCA GCA GCA GCG
224446 TCG * 8 22/24 TCG GCG TCG TCG TCG TCG TCG TCT
-----------------------------------------------------------------------------------------
Total sequence length......................... 233313
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 0 1 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 3 3 0 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
GCT 4 3 0 1 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 1 GTT + 0 TTG + 1 TGT = 2
0 ATG + 0 TGA + 1 GAT + 0 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 1
0 AGC + 2 GCA + 1 CAG + 4 GCT + 1 CTG + 3 TGC = 11
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 1 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 1 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7300894|gb|AE003740.1|AE003740 Drosophila melanogaster genomic scaffold 142000013386035 section 65 of 105, complete sequence
Position Repeat Coverage Repeat
6516 CAG * 12 33/36 CAG GAG CAG CAG CAG CAG CAG CAG CAG CAT CAG CAT
12270 CAG * 8 22/24 CAG CAG TAG CAG CAG CAG CAG CAA
12433 CAT * 7 19/21 CAT CAT CAT CAA CAG CAT CAT
12459 GCA * 19 52/57 GCA GCA GCA GCA GCA ACA GCA GCA GCA GCA TCA GCA GCA GCA ACT GCA ACA GCA GCA
34742 CAG * 8 22/24 CAG CAG CAG CAG CCG CAG CAG CAA
65875 GTA * 8 22/24 GTA GTA GTA GTA GTA GTA TTT GTA
86711 ATA * 7 21/21 ATA ATA ATA ATA ATA ATA ATA
139041 CAG * 7 19/21 CAG CAA CAG CAA CAG CAG CAG
139395 GCA * 10 27/30 GCA GCA GCA GCA ACA GCA GCA GCA GCA ATA
141275 CAG * 11 30/33 CAG CAA CAG CAG CAG CAG CAA CAG CAG CAT CAG
141893 CAG * 7 19/21 CAG CAG TTG CAG CAG CAG CAG
141948 GTG * 8 22/24 GTG GTG GTG GTG GCG GTG GCG GTG
157447 GCA * 8 22/24 GCA GCA GCA GCA GCA GCA GCA AAA
159670 GCA * 9 25/27 GCA GCA GCT GCA GCA GCA ACA GCA GCA
159710 CAG * 9 25/27 CAG CAG CAG CAG CAG CAG CAG CGC CAG
169487 CTG * 8 22/24 CTG CTC CTG GTG CTG CTG CTG CTG
172030 AGC * 7 19/21 AGC AGC AGG AGC AGC AGG AGC
179420 AGC * 7 19/21 AGC AGC AGC AGC AGC AGG AGT
189262 TTA * 13 36/39 TTA TTA TTA TTA TTA TTT TTA TTT TTA TTA TTA TTA TTT
219822 CAT * 8 23/24 CAT CAT CAT CAT CAT CAT CTT CAT
224653 GCA * 11 30/33 GCA GCA ACA ACA GCA GCA GCA GCA GCA GCA ACA
233646 CTG * 11 30/33 CTG CTG CTG ATG CTG CTG CTG CTG CGG CTG CTT
-----------------------------------------------------------------------------------------
Total sequence length......................... 234569
Total number of repeats detected.............. 22
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TTA 1 0 0 1 0 0 0 0 0 0 0 0 0
GTA 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 5 2 2 0 0 1 0 0 0 0 0 0 0
CAT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 7 5 2 0 0 0 0 0 0 0 0 0 0
CTG 2 1 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 2 CAT + 0 ATC + 0 TCA = 2
0 AGT + 1 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
2 AGC + 5 GCA + 7 CAG + 0 GCT + 2 CTG + 0 TGC = 16
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 1 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7300851|gb|AE003739.1|AE003739 Drosophila melanogaster genomic scaffold 142000013386035 section 64 of 105, complete sequence
Position Repeat Coverage Repeat
4395 CTG * 10 28/30 CTG TTG CTG CTG CTG CTG CTG CTG CTG CAG
4710 CTG * 7 19/21 CTG TTG CTG CTG CTG CTG TTG
5152 TGC * 7 19/21 TGC TGC TGC TGT TGT TGC TGC
36585 CGC * 7 19/21 CGC CGC CAC CGC CGC CGC CAC
36995 CAG * 7 20/21 CAG CAG CAG CAG CAG CAG CAA
59944 CAA * 7 19/21 CAA CAG CTA CAA CAA CAA CAA
59978 AAC * 7 19/21 AAC CAC AAC AAC AAC AAC CAC
60805 GCA * 7 19/21 GCA GCA GTA GCA GCA GTA GCA
60861 AGC * 7 20/21 AGC AGC AGC AGC AGC AGC GGC
62615 AAT * 9 25/27 AAT AAT AGT AAT AAT AAT AAT AAT GAT
131121 GAT * 10 28/30 GAT CAT GAT CAT GAT GAT GAT GAT GAT GAT
157485 GCA * 8 22/24 GCA GCA ACT GCA GCA GCA GCA GCA
169954 TTG * 8 22/24 TTG TAG TTG TTG TTG TTG TTG TGG
180158 GCA * 8 22/24 GCA GCA GCA GCA GCA GCA GCA ACT
180890 CAG * 7 19/21 CAG CAG CAA CAT CAG CAG CAG
180917 CAG * 9 25/27 CAG CAG CAG CAG CAA CAG CAG CAG CAA
183422 CAG * 7 19/21 CAG CAG AAG GAG CAG CAG CAG
195354 GGT * 8 22/24 GGT GGT GGT GGT GGT GGA GGT GGC
201297 TGC * 12 33/36 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGA TGA TGA
201333 TGA * 7 19/21 TGA TGA TGA TGA TGA TGG TGG
211154 TTG * 8 22/24 TTG TTG TTG CTG TTG TTG TTG TTC
221889 TCA * 7 19/21 TCA TCA TCA TCA TCA GCA GCA
221918 ATT * 14 38/42 ATT ATT ATT ATT CTT ATT ATT CTT ATT ATT ATT ATT ATT CTG
-----------------------------------------------------------------------------------------
Total sequence length......................... 223815
Total number of repeats detected.............. 23
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 1 0 0 1 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 1 1 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 0 1 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 3 3 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 4 4 0 0 0 0 0 0 0 0 0 0 0
CTG 2 1 1 0 0 0 0 0 0 0 0 0 0
CGC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 1 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 1 CAA + 0 GTT + 2 TTG + 0 TGT = 4
0 ATG + 1 TGA + 1 GAT + 0 CAT + 0 ATC + 1 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 3 GCA + 4 CAG + 0 GCT + 2 CTG + 2 TGC = 12
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 1 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 1 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7300816|gb|AE003738.1|AE003738 Drosophila melanogaster genomic scaffold 142000013386035 section 63 of 105, complete sequence
Position Repeat Coverage Repeat
6870 CTG * 11 30/33 CTG TTG CTG CTG CTG CTG CTG CTG TTG CTG TTG
20508 AGC * 21 57/63 AGC AGC AGC AGC AAC AGC AGC AGC AGC AAC AGC AGT AGC AGC AAC AGC AGC AGC AGC AGA AGG
24722 TCA * 9 25/27 TCA TAA TCA TCA TCA TCA TCA TCA TTA
29494 TGT * 7 19/21 TGT TGT TGT TCT AGT TGT TGT
35663 GAT * 7 19/21 GAT GAT GAT GAT GAT GAT GGC
53934 TGC * 7 19/21 TGC TGC TGC TGT TGC TGC TGT
53972 CTG * 10 27/30 CTG CTG TTG CTG CTT CTG CTG CTG CTG TTG
60022 TGC * 10 27/30 TGC AGC TGA TGC TGC TGC TGC TGC TGC TGA
71567 ATC * 7 19/21 ATC ATC ATC ATC AAC AAC ATC
79678 GAT * 7 19/21 GAT GAT GAT GAT AAC GAT GAT
86485 CAG * 10 27/30 CAG GAG CAG CAG CAG CAG CAG CAG AAG CTG
88151 CAG * 8 22/24 CAG CAG CAG CAA CAG CAG CAG CAA
89716 GCA * 7 19/21 GCA GCA GCA GCA GCA GCA GGC
91629 GCA * 7 19/21 GCA GCT GCA GCA GCC GCA GCA
97589 ACG * 8 22/24 ACG ATG ACG ACG ACG TCG ACG ACG
110991 CAG * 7 19/21 CAG CAG CAG CAC CAC CAG CAG
129340 AGC * 7 19/21 AGC AGC AGC ACC AGC AAC AGC
129905 TGC * 7 19/21 TGC TGC TGC TGC TGC TGA TGT
146560 CTG * 7 19/21 CTG CTG CTG CTG TGG CTG CTG
199776 GCA * 7 19/21 GCA GCA GCA GCA GGA GCA GTA
223962 TTC * 8 22/24 TTC TTC TTT TTC TTC TTC TTC TTT
224084 CTT * 7 19/21 CTT CTT CTT TTT CTT CTT TTT
-----------------------------------------------------------------------------------------
Total sequence length......................... 226102
Total number of repeats detected.............. 22
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 1 0 0 0 1 0 0 0 0 0 0 0
ACG 1 1 0 0 0 0 0 0 0 0 0 0 0
TTC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 3 2 1 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCA 3 3 0 0 0 0 0 0 0 0 0 0 0
CAG 3 2 1 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 3 1 2 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 1 CTT + 1 TTC + 0 TCT = 2
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 1 TGT = 1
0 ATG + 0 TGA + 2 GAT + 0 CAT + 1 ATC + 1 TCA = 4
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
2 AGC + 3 GCA + 3 CAG + 0 GCT + 3 CTG + 3 TGC = 14
1 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7300796|gb|AE003737.1|AE003737 Drosophila melanogaster genomic scaffold 142000013386035 section 62 of 105, complete sequence
Position Repeat Coverage Repeat
108 CTG * 8 22/24 CTG CTG TTG CTG CTG CTG CTG CTA
581 AGC * 12 33/36 AGC TGC AGC AGC AGC AGC AGC AGC AGC AGC AGC AAT
19683 AAC * 7 19/21 AAC AAC AAC TGC AAC AAC AAC
20529 GCA * 8 22/24 GCA GCA GCT GCA GCA GCA TCA GCA
20555 GCA * 7 19/21 GCA GCA GCA TCA GCA GCA GCG
23578 CTG * 7 19/21 CTG CTG CTG CTT CTG CTG CAG
23605 CTG * 9 25/27 CTG CTG CTG CTG CTG CTG CTG CGG CAG
23745 TCG * 7 20/21 TCG TCG TCG TCG TCG TCG TCA
23979 CTG * 7 19/21 CTG CTT TTG CTG CTG CTG CTG
33117 CTG * 7 19/21 CTG TTG CTG CTG TTG CTG CTG
38902 ACG * 7 19/21 ACG ACG ACG ATG GCG ACG ACG
39037 AGC * 8 23/24 AGC AGC AGC AGC AGC AGC AGC AGT
39095 GCT * 7 19/21 GCT CCT CCT GCT GCT GCT GCT
40987 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAA CAA
41219 CAG * 8 23/24 CAG CAG CAG CAG CAG CAG CAA CAG
49237 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAA CAT
50202 GGC * 10 27/30 GGC GGC TGC GGC GGC GGC GGC GGC AGC AGC
50816 GCG * 10 27/30 GCG GCG GCG GCG GCG GCG GCG GCG GCA ATG
52115 CAA * 10 27/30 CAA CAA CAG CAA CTA CAA CAA CAA CAA TAA
52163 AAC * 9 25/27 AAC AAC AAC AAC AAC AAC AGT AAC AAC
56152 CAA * 11 30/33 CAA CAA CAA CAA CAA CAA CAG CAG CAA CCA CAA
56601 ACA * 7 19/21 ACA ACA AGA ACA ACA ACA ATA
57717 CAA * 10 28/30 CAA CAA CAA CAA CAA CAA CAA CAA TAT CAA
57771 CAA * 13 36/39 CAA CAA CAA CAA CAA CAA CCA TAA CAA CAA CAA CAA TAA
60145 GAA * 7 19/21 GAA GAA AAA GAA GAA GAA GAC
83185 TCA * 7 19/21 TCA TCA TCA TCA TAA TCA TTA
100752 TGA * 8 24/24 TGA TGA TGA TGA TGA TGA TGA TGA
105722 TGA * 7 20/21 TGA TGA TGA TGA TGA TGA TGC
112739 GCT * 9 25/27 GCT GCT GCT GCG GCT GCT GCT GCT GTT
129425 CTA * 7 19/21 CTA AAA CTA CTA CTA CTA CTA
130432 CCT * 7 19/21 CCT CCT CCA CCT CCT CCT CCG
130560 TCC * 8 22/24 TCC ACC TCC TCC TCC TCG TCC TCC
141205 GCT * 8 22/24 GCT GCT GCT GCT GTT GCT CCT GCT
151436 AGC * 10 27/30 AGC AGC AGT AGC AGT AGC AGC AGC AGC AGT
151686 AGC * 8 22/24 AGC AGC AGG AGC AGG AGC AGC AGC
169596 AGC * 9 25/27 AGC AAC AGC AGC AGC AGC AGA AGC AGC
170037 AGC * 7 19/21 AGC AGC AAC ATC AGC AGC AGC
170994 CAG * 15 41/45 CAG GAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAC CAT CAT
179486 AAC * 7 19/21 AAC AGC AAC AAC AAC AAC TAC
179627 GTT * 7 19/21 GTT GCT GTT GTT GTT GTT GTC
182914 TGA * 7 20/21 TGA TGA CGA TGA TGA TGA TGA
183897 AGC * 7 19/21 AGC AGC AGC AAC AGC AAC AGC
184916 TGT * 14 38/42 TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGC TGC TGC TTT
190266 GCA * 8 22/24 GCA GGA GCA GCA GCA GCA GCA GCT
196316 CTG * 8 23/24 CTG CTG CTG CTG CTG TTG CTG CTG
196373 CTG * 8 22/24 CTG TTG CTG CTG CTG CTG CTG TTG
197016 TTG * 7 19/21 TTG TTG TTG TTG TTT TTG GTG
198321 AGC * 10 28/30 AGC AGC AGC AGC AGC AGC AGC AGC ATC AAC
203749 CAG * 7 19/21 CAG CAG CGG CAG CAG CAG CCG
206135 CTG * 7 19/21 CTG CTG TTC CTG CTG CTG CTG
210944 TTA * 8 22/24 TTA TCA TTA TTG TTA TTA TTA TTA
213330 CAG * 10 27/30 CAG CAG CAG CAG CAG TAG CAG CAG CGG CGG
219182 TCA * 7 20/21 TCA TCA TCA TCA TCA TCA ACA
222033 CAT * 7 20/21 CAT CAT CAT CAT CGT CAT CAT
228742 GTT * 7 19/21 GTT GTT GTT GTT GTT GCT GCT
231118 CAG * 12 33/36 CAG CAG CAG CAT CAG GAG CAG CAG CAG CAA CAG CAG
232318 GCT * 8 22/24 GCT GCT GCT GCT GCT GCT CCT GGT
233803 CAG * 7 20/21 CAG CAG CAG CAG CGG CAG CAG
-----------------------------------------------------------------------------------------
Total sequence length......................... 238433
Total number of repeats detected.............. 58
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 3 3 0 0 0 0 0 0 0 0 0 0 0
AGC 8 5 3 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
ACG 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 3 3 0 0 0 0 0 0 0 0 0 0 0
TGT 1 0 0 1 0 0 0 0 0 0 0 0 0
TCA 2 2 0 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 2 2 0 0 0 0 0 0 0 0 0 0 0
GGC 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 3 3 0 0 0 0 0 0 0 0 0 0 0
GCT 4 4 0 0 0 0 0 0 0 0 0 0 0
GCG 1 0 1 0 0 0 0 0 0 0 0 0 0
CAA 4 0 3 1 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 8 5 2 1 0 0 0 0 0 0 0 0 0
CTA 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 8 8 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 1
0 AAG + 0 AGA + 1 GAA + 0 CTT + 0 TTC + 0 TCT = 1
3 AAC + 1 ACA + 4 CAA + 2 GTT + 1 TTG + 1 TGT = 12
0 ATG + 3 TGA + 0 GAT + 1 CAT + 0 ATC + 2 TCA = 6
0 AGT + 0 GTA + 0 TAG + 0 ACT + 1 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 1 CCT + 0 CTC + 1 TCC = 2
8 AGC + 3 GCA + 8 CAG + 4 GCT + 8 CTG + 0 TGC = 31
1 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 1 TCG = 2
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
1 GGC + 1 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7300765|gb|AE003736.1|AE003736 Drosophila melanogaster genomic scaffold 142000013386035 section 61 of 105, complete sequence
Position Repeat Coverage Repeat
3035 CAA * 8 22/24 CAA CAA CAA CAA CAG CAA CAG CAA
27044 ATT * 7 19/21 ATT ATT GTT ATT ATT ATT GTT
65371 TAT * 11 31/33 TAT TAT AAT TAT TAT TAA TAT TAT TAT TAT TAT
72290 TAT * 14 38/42 TAT TAT AAT TAT TAT TAA TAT TAT TAT TAT TAT TGT TAT TAG
73080 TAT * 18 50/54 TAT TAT AAT TAT TAT TAA TAT TAT TAT TAT TAT TGT TAT TAT TAT TGT TAT TAT
76138 TGC * 9 25/27 TGC TGC TGC TGC TGC TGT TGC TGT TGC
76167 CTG * 7 19/21 CTG CTG GTG TTG CTG CTG CTG
102992 GCG * 7 19/21 GCG TCG GCG GCG GCG GCG GCT
108770 CCG * 7 19/21 CCG CCA CCG ACG CCG CCG CCG
113236 TGC * 7 19/21 TGC TGA TGC TGC TGC TGC GGC
113259 CTG * 7 19/21 CTG CTG CTG CGG ATG CTG CTG
114145 TCA * 7 19/21 TCA TCA TCA GCA TCA ACA TCA
114176 CAT * 11 30/33 CAT CAT CAT CAT CAT CAT CAT CAT CAG CAG CAG
117985 GCA * 7 19/21 GCA GCA GCG GCA ACA GCA GCA
128529 AAC * 7 19/21 AAC AGC AAC AAC AAC AAC AAT
130684 AAG * 10 27/30 AAG AAG AAG ACG AAG AAG AAG AAG AAG AGA
142196 CAG * 7 19/21 CAG CAG CAG CAA CAG CAG CAA
142461 TGC * 11 30/33 TGC TGC TGC AGC TGC TGC TGC TGC TGC TGT TGT
144613 TTA * 7 19/21 TTA TTA GAA TTA TTA TTA TTA
177208 TAT * 7 20/21 TAT TAT TAT TAT TAT TAT TGT
205207 CTG * 7 19/21 CTG CTG CTG TTG CTG CTG CTT
208855 CAT * 8 22/24 CAT CAT CAT CAT CAT CAT CAG CAG
212880 AAT * 7 19/21 AAT AAT AAT AAT AAT AAC AAG
223281 GCA * 7 19/21 GCA GCA GAA GCA ACA GCA GCA
238755 TGC * 7 19/21 TGC TGT TGC TGC TGC TGC GGC
238948 GCA * 7 19/21 GCA ACG GCA GCA GCA GCA GCA
241377 GCT * 10 28/30 GCT GCT GCT GCT GCT GCT GCT GCT GCT GGC
242277 GAT * 7 19/21 GAT GAT GGT GAT GAT CAT GAT
247607 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAA CAA
247847 ACA * 8 23/24 ACA ACA ACA ACA ACA ACA ACT ACA
247945 TGC * 7 19/21 TGC TGT TGC TGC TGC TGC TGT
248830 CAG * 15 41/45 CAG CAG CAG CAG CAA CAG CAG CAG CAG CAG CAG CAA CTG CAG CAA
259029 TGC * 8 23/24 TGC TGC TGC TGC TGC TGC TGC CGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 260278
Total number of repeats detected.............. 33
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAG 1 0 1 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 4 1 1 1 1 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 6 5 1 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 3 3 0 0 0 0 0 0 0 0 0 0 0
GCT 1 0 1 0 0 0 0 0 0 0 0 0 0
GCG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 2 1 1 0 0 0 0 0 0 0 0 0 0
CAG 3 2 0 1 0 0 0 0 0 0 0 0 0
CTG 3 3 0 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 1 ATT + 1 TTA + 4 TAT = 7
1 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 1
1 AAC + 1 ACA + 1 CAA + 0 GTT + 0 TTG + 0 TGT = 3
0 ATG + 0 TGA + 1 GAT + 2 CAT + 0 ATC + 1 TCA = 4
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 3 GCA + 3 CAG + 1 GCT + 3 CTG + 6 TGC = 16
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 1 GCG + 0 CGG + 0 GCC + 1 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7300751|gb|AE003735.1|AE003735 Drosophila melanogaster genomic scaffold 142000013386035 section 60 of 105, complete sequence
Position Repeat Coverage Repeat
92895 TGC * 11 30/33 TGC TGA TGC TGC TGC TGC TGC TGC TTC TGC TTC
92940 TGG * 11 30/33 TGG TTA TGG TGG TGG TGG TGG TGG TGG TGG AGG
101088 CAT * 7 20/21 CAT CAT CAT CAT CAT CAT CCT
115606 TGA * 7 19/21 TGA TGA TGC TGC TGA TGA TGA
115645 TGC * 7 19/21 TGC TGC TGC TGA TGC TGC CGC
115956 GCT * 7 19/21 GCT GCT GCT GTT GCT ACT GCT
119537 AAG * 10 27/30 AAG AAG AAG AAG AAG AAG CTG AAG AAG GAG
132924 CAT * 10 27/30 CAT CAT CAT CAT CAT CAT CAG CAT CAG CAG
134063 GGC * 7 19/21 GGC GGC GGC GTC GGC AGC GGC
135560 TGC * 7 19/21 TGC TGC TGC TGC GGC TGC TTC
139011 GTT * 7 19/21 GTT TCT GTT GTT GTT GTT GTT
150331 CAC * 10 27/30 CAC CAC CAC CAC CAC CAC GAC CAC CAC CCA
153948 ACA * 7 19/21 ACA ACA ACA ACA ACA ATA ATA
158585 GCC * 8 22/24 GCC GCC GCC GCC GCC ACC ACC GCC
159120 TGC * 7 19/21 TGC TGC TGC TGC TGC TGG TTC
161698 TGC * 8 22/24 TGC TGC TGC TGC AGT TGC TGC TGC
161900 TGT * 7 19/21 TGT TGT TGT TGT TGT TGA TGC
170363 AAG * 8 22/24 AAG AAG AAG AAG AAG AAG AAT GAG
192287 CAA * 7 19/21 CAA CAG CAG CAA CAA CAA CAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 231849
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAG 2 1 1 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 5 4 1 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 2 1 1 0 0 0 0 0 0 0 0 0 0
CAC 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
2 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 2
0 AAC + 1 ACA + 1 CAA + 1 GTT + 0 TTG + 1 TGT = 4
0 ATG + 1 TGA + 0 GAT + 2 CAT + 0 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 1 GCT + 0 CTG + 5 TGC = 6
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 1 TGG = 2
1 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7300718|gb|AE003734.1|AE003734 Drosophila melanogaster genomic scaffold 142000013386035 section 59 of 105, complete sequence
Position Repeat Coverage Repeat
12059 AAC * 12 33/36 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AGC TTC
57238 CAT * 8 22/24 CAT AAT CAT CAT CAT CAT CGT CAT
66556 AGC * 7 20/21 AGC AGC AGC AGC AGC AGG AGC
70601 TGG * 8 22/24 TGG TTG TGG TGA TGG TGG TGG TGG
75558 TAT * 8 22/24 TAT TTT TAT TAT TAT TAT TAT TAA
98528 CTG * 8 22/24 CTG CTG CTG CTG CTG ATG CTC CTG
100867 TAG * 8 22/24 TAG TAG TAG TAG TAG TAG TTA TAG
100902 GTA * 8 22/24 GTA GTA GTA GCA GTA TTA GTA GTA
106533 TCC * 7 19/21 TCC GCC TCC TCC ACC TCC TCC
119557 GCT * 12 33/36 GCT GCT GAT GCT GCT GCT GAT GCT GCT GCT GCT GCG
122112 AGC * 10 28/30 AGC AGA AGC AGA AGC AGC AGC AGC AGC AGC
158330 GCA * 7 20/21 GCA GCA GCA GCA GCA GCA TCA
167784 GGA * 9 25/27 GGA GGA GGA GGA GGA GGA GGA GTG GGA
191399 AGC * 8 22/24 AGC AGC AGC AGC AGC AGC GGC AGA
224296 AGC * 8 23/24 AGC AGC AGC AGC AGC AGC GGC AGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 240910
Total number of repeats detected.............. 15
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 0 1 0 0 0 0 0 0 0 0 0 0
AGC 4 3 1 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TAG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTA 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 1 0 1 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 1
0 AGT + 1 GTA + 1 TAG + 0 ACT + 0 CTA + 0 TAC = 2
0 AGG + 1 GGA + 0 GAG + 0 CCT + 0 CTC + 1 TCC = 2
4 AGC + 1 GCA + 0 CAG + 1 GCT + 1 CTG + 0 TGC = 7
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 1 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7300681|gb|AE003733.1|AE003733 Drosophila melanogaster genomic scaffold 142000013386035 section 58 of 105, complete sequence
Position Repeat Coverage Repeat
32914 CAG * 10 27/30 CAG CAG CGG CAG CAG CGG CAG CAG CAG CAC
70284 AGT * 7 20/21 AGT AGT AGT AGT AGT GGT AGT
92160 GAT * 7 19/21 GAT GAC GAT GAT GGT GAT GAT
105076 TGC * 8 22/24 TGC TGC ACC TGC TGC TGC TGC TGC
106791 AGC * 8 23/24 AGC AGC AGT AGC AGC AGC AGC AGC
110310 TGC * 7 19/21 TGC TGC TGC TGC TGC TGG TGA
113972 CTG * 7 19/21 CTG CTG CCG CTG CTG CTG CTT
114209 TGT * 7 19/21 TGT TGT TGT TAT TGT TGT TCT
132231 CCA * 8 22/24 CCA CCA CCA ACA CCA CCA CCA TCA
132256 CAG * 7 19/21 CAG AAG CAG CAG CAG CAG CAA
142061 GTT * 9 25/27 GTT TTT GTT GTT GTT GTT GTT GTT GTG
191904 CAG * 7 21/21 CAG CAG CAG CAG CAG CAG CAG
206922 CCA * 7 20/21 CCA CAA CCA CCA CCA CCA CCA
-----------------------------------------------------------------------------------------
Total sequence length......................... 230303
Total number of repeats detected.............. 13
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 3 2 1 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 1 GTT + 0 TTG + 1 TGT = 2
0 ATG + 0 TGA + 1 GAT + 0 CAT + 0 ATC + 0 TCA = 1
1 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 0 GCA + 3 CAG + 0 GCT + 1 CTG + 2 TGC = 7
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 2 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7300654|gb|AE003732.1|AE003732 Drosophila melanogaster genomic scaffold 142000013386035 section 57 of 105, complete sequence
Position Repeat Coverage Repeat
4127 TTC * 7 19/21 TTC TTC TTG TTT TTC TTC TTC
9211 TGC * 8 22/24 TGC TTC GGC TGC TGC TGC TGC TGC
13329 ATT * 7 19/21 ATT ATT ATT ATT CTT ATT AAT
16535 GTC * 8 23/24 GTC GTC GAC GTC GTC GTC GTC GTC
31595 CAT * 8 22/24 CAT CAT CAT CGT CAT CAT CAT CAC
33905 CTG * 7 19/21 CTG ATT CTG CTG CTG CTG CTG
35313 CTT * 8 22/24 CTT CTT CTT CGT CTC CTT CTT CTT
53089 ATG * 8 22/24 ATG ATG ATG ATG ATG ATG ACG ACG
57042 CAA * 11 30/33 CAA CTA CAA CAA CAA CAT CAA CAA CAA CAG CAA
71078 GCT * 9 25/27 GCT GCT GCT GCT GCT GCT GTT GCT GTT
71111 GCT * 12 33/36 GCT GCT GTT GTT GCT GCT GCT GCT GCT GCT GCT TCT
83829 GCA * 7 19/21 GCA GCT GCA GCA GCA GCA ACA
102101 AGA * 9 25/27 AGA AGC AGG AGA AGA AGA AGA AGA AGA
120670 CAT * 7 19/21 CAT AAT CAT CAT CAT CAA CAT
171714 CCT * 8 22/24 CCT CCT CCT CTT CCT CCT CCT GCT
181298 GCT * 14 38/42 GCT GCT GCT GCT GCT GCT GCT GCT GCT GGT GCG GAT GCT GGT
186198 GAT * 8 22/24 GAT GAC GAT AAT GAT GAT GAT GAT
196321 CTG * 7 19/21 CTG CTG TTG CTG CTG TTG CTG
199958 TGC * 7 19/21 TGC TGC TGC TGC TGC TAC TAC
212233 TAA * 7 19/21 TAA TAA TAT TCA TAA TAA TAA
225601 ACA * 7 19/21 ACA ACA ACA ACA ACC AAA ACA
-----------------------------------------------------------------------------------------
Total sequence length......................... 234369
Total number of repeats detected.............. 21
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGA 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 3 1 1 1 0 0 0 0 0 0 0 0 0
CAA 1 0 1 0 0 0 0 0 0 0 0 0 0
CAT 2 2 0 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 2 2 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 1 ATT + 0 TTA + 0 TAT = 2
0 AAG + 1 AGA + 0 GAA + 1 CTT + 1 TTC + 0 TCT = 3
0 AAC + 1 ACA + 1 CAA + 0 GTT + 0 TTG + 0 TGT = 2
1 ATG + 0 TGA + 1 GAT + 2 CAT + 0 ATC + 0 TCA = 4
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 1 CCT + 0 CTC + 0 TCC = 1
0 AGC + 1 GCA + 0 CAG + 3 GCT + 2 CTG + 2 TGC = 8
0 ACG + 0 CGA + 0 GAC + 0 CGT + 1 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7300622|gb|AE003731.1|AE003731 Drosophila melanogaster genomic scaffold 142000013386035 section 56 of 105, complete sequence
Position Repeat Coverage Repeat
95410 CAA * 8 22/24 CAA CAA CAA CAA CAG CAG CAA CAA
95434 CAG * 8 22/24 CAG CAA CAG CAG CAG CAG CAG CAA
102466 GCT * 7 19/21 GCT GCT GCA GCT GCT GCT GCG
133200 GCA * 7 19/21 GCA GCA GCA GCA GCA ACA TCA
152996 CCG * 7 19/21 CCG CCG CCG CCT CCT CCG CCG
163131 AGC * 7 19/21 AGC AGC AGC AGG AGC AGC ATC
222687 TGG * 7 19/21 TGG TGG TAG TAG TGG TGG TGG
-----------------------------------------------------------------------------------------
Total sequence length......................... 225829
Total number of repeats detected.............. 7
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 1 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 1 GCA + 1 CAG + 1 GCT + 0 CTG + 0 TGC = 4
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 1 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 1 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7300601|gb|AE003730.1|AE003730 Drosophila melanogaster genomic scaffold 142000013386035 section 55 of 105, complete sequence
Position Repeat Coverage Repeat
27969 CTC * 7 19/21 CTC CTG CTC CTG CTC CTC CTC
27990 CTG * 7 20/21 CTG CTG CTG CTG CTA CTG CTG
34308 ATT * 7 21/21 ATT ATT ATT ATT ATT ATT ATT
50702 TTG * 9 25/27 TTG TTT TCG TTG TTG TTG TTG TTG TTG
64122 GCG * 7 19/21 GCG GCG GCG GCG GCG GCT GTG
84731 CGT * 7 19/21 CGT GGT CGT CGT CGT CGT TGT
91609 GTT * 10 27/30 GTT GAT GTG GTT GTT GTT GTT GTT GTT ATT
136218 TGT * 7 19/21 TGT TGT TGT TGT TGT TAT TGC
157403 CAA * 11 30/33 CAA CAA CAA CAA CAA GAA CAA CAA CAG CAA CAC
172537 CCA * 7 19/21 CCA CCA TCA CCA TCA CCA CCA
-----------------------------------------------------------------------------------------
Total sequence length......................... 221365
Total number of repeats detected.............. 10
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 0 1 0 0 0 0 0 0 0 0 0 0
GCG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 0 1 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CGT 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 1 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 1 CAA + 1 GTT + 1 TTG + 1 TGT = 4
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 1
0 AGC + 0 GCA + 0 CAG + 0 GCT + 1 CTG + 0 TGC = 1
0 ACG + 0 CGA + 0 GAC + 1 CGT + 0 GTC + 0 TCG = 1
0 ACC + 1 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 1 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7300591|gb|AE003729.1|AE003729 Drosophila melanogaster genomic scaffold 142000013386035 section 54 of 105, complete sequence
Position Repeat Coverage Repeat
34602 GCA * 7 19/21 GCA GCA GCA GCA GCA ACT GCA
52633 AGC * 7 19/21 AGC AGC AGC TGC AGC AGC ATC
100530 AAT * 8 22/24 AAT AAT AAT AAT AAT AAG TAT AAT
105950 AGC * 10 28/30 AGC AGC AGC AGC AGC AGC AGT AGA AGC AGC
120499 CAG * 7 19/21 CAG CAG CAG CAG CAG CCG CAT
139744 GCT * 7 19/21 GCT GCT GCT GTT GCT GCG GCT
154395 AAT * 7 19/21 AAT AAT AAT AAT AAT AAT ACG
155256 AGC * 10 27/30 AGC CGC AGC AGC AGC CGC AGC AGC AGC GGC
156115 AGC * 7 19/21 AGC AGC AGC AGC AAC ACC AGC
166752 CAG * 7 19/21 CAG CAT CCG CAG CAG CAG CAG
183425 AGC * 7 19/21 AGC AGC AGC AGC AGC AAC AAC
186237 TTG * 8 22/24 TTG TTG TTT TTG TTG TTG CTG TTG
195560 TAT * 7 19/21 TAT TAT TAT TAT TAT TAT ATT
216664 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CAA
216985 CAG * 7 20/21 CAG CAG CAG CAG CAG CAG CAA
217122 CAG * 7 19/21 CAG TAG CAA CAG CAG CAG CAG
217330 CAG * 8 22/24 CAG CAG CAG CAG CAG CAA CAA CAG
217414 CAG * 7 19/21 CAG CAG CAG CAA CAG CAG CAA
222243 GCA * 7 19/21 GCA GCA GCA ACA GCA GCA ACA
222363 CAA * 7 19/21 CAA CAA CAA CAA CAA CAG TAA
223162 GCA * 8 22/24 GCA ACA GCA GCA GCA GCA TCA GCA
223196 CAG * 7 19/21 CAG CAG CAA CTG CAG CAG CAG
223591 GCA * 9 25/27 GCA GCA ACA GCA GCA GCA GCA ACA GCA
-----------------------------------------------------------------------------------------
Total sequence length......................... 230977
Total number of repeats detected.............. 23
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 2 2 0 0 0 0 0 0 0 0 0 0 0
AGC 5 3 2 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 4 4 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 8 8 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
2 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 3
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 1 CAA + 0 GTT + 1 TTG + 0 TGT = 2
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
5 AGC + 4 GCA + 8 CAG + 1 GCT + 0 CTG + 0 TGC = 18
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7300549|gb|AE003728.1|AE003728 Drosophila melanogaster genomic scaffold 142000013386035 section 53 of 105, complete sequence
Position Repeat Coverage Repeat
1113 GCA * 10 27/30 GCA GAA GCA GCG GCA GCA GCA GCA GCA GGA
14989 TTA * 7 19/21 TTA TTA TTA TTA TTA TTA AAA
37840 ATT * 7 20/21 ATT ATT ATT ATT ATT ATT ATA
48464 TGT * 8 22/24 TGT TGT TTT TGT TGC TGT TGT TGT
48508 TGT * 8 22/24 TGT TCT TGT TGT TGT TGT TGC TGT
52692 AGC * 10 28/30 AGC AGC AGC AGC CGC AGC AGC AGC AAC AGC
55495 CAG * 7 19/21 CAG CAG CAG CAG CAT CAA CAG
67477 AGC * 7 19/21 AGC AAC AGC AGC AGC AGC AAC
111718 ATT * 7 19/21 ATT ATT ATT ATT ATT ATG TTT
114664 GGT * 7 19/21 GGT GGT GAT GGT GAT GGT GGT
171771 GCA * 7 19/21 GCA GCA GCA GCA GCA GAA TCA
172017 GCA * 7 20/21 GCA GCA GCA GCA ACA GCA GCA
172041 GCA * 9 25/27 GCA GCA GCA GCA GCA GCA GCA ACA ACA
172159 CAG * 7 19/21 CAG CAA CAG CAA CAG CAG CAG
172824 GCA * 8 22/24 GCA ACA GCA GCA GCA ACA GCA GCA
172891 CAA * 7 19/21 CAA CAG CAA CAA CAA CAA CAG
174295 CGT * 8 22/24 CGT CGT CGT CGT CGT CGT CGT CAG
226998 ATA * 7 19/21 ATA ATT ATA ATA ATA ATA ATC
229165 CAG * 7 19/21 CAG AAG CAG CAG CAG AAG CAG
-----------------------------------------------------------------------------------------
Total sequence length......................... 231828
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 2 2 0 0 0 0 0 0 0 0 0 0 0
AGC 2 1 1 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 2 2 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 5 4 1 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 3 3 0 0 0 0 0 0 0 0 0 0 0
CGT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 2 ATT + 1 TTA + 0 TAT = 4
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 1 CAA + 0 GTT + 0 TTG + 2 TGT = 3
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
2 AGC + 5 GCA + 3 CAG + 0 GCT + 0 CTG + 0 TGC = 10
0 ACG + 0 CGA + 0 GAC + 1 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 1 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7300524|gb|AE003727.1|AE003727 Drosophila melanogaster genomic scaffold 142000013386035 section 52 of 105, complete sequence
Position Repeat Coverage Repeat
73601 AAG * 8 22/24 AAG AAG AAA AAG AAG AAG AAT AAG
84328 GCA * 7 19/21 GCA TCA GCA GCA GCG GCA GCA
87405 GCT * 7 19/21 GCT GCT CCT GCT GCT TCT GCT
93452 CAT * 8 22/24 CAT CAT CAT CAT CAT CAT CAT TGT
124112 CTG * 8 23/24 CTG CTG CTG CTG CTG CTG CTG CTT
130949 CGT * 7 19/21 CGT CGT CGT CGG CGT CGT CGA
132424 GAA * 9 25/27 GAA GAC GAA GAC GAA GAA GAA GAA GAA
132547 GCT * 7 19/21 GCT GCT GCT GCC GCT GCT TCT
133691 GAT * 7 19/21 GAT GAC GAT GAC GAT GAT GAT
135614 CAG * 8 22/24 CAG CAG CAG CAG CAG CAA CAG CAA
135790 AGC * 7 19/21 AGC AGA AGC AGC AGC AGC AGT
163162 CCA * 7 19/21 CCA CCA CAA CCA CAA CCA CCA
169369 ACA * 7 19/21 ACA ACA ACA ACA AGA ACT ACA
179161 AAT * 7 19/21 AAT GAT AAT AAT AAT GAT AAT
201258 CTG * 8 22/24 CTG ATG CTG TTG CTG CTG CTG CTG
201637 CTA * 7 19/21 CTA CTA CTA TTG CTA CTA CTA
201793 CTG * 7 19/21 CTG CTA CTA CTG CTG CTG CTG
228908 CAC * 7 19/21 CAC CAG CAC CAC CAA CAC CAC
232569 TGC * 7 19/21 TGC TGC TGC TGA TGC TGT TGC
238411 AAC * 7 19/21 AAC AAC AAG AAT AAC AAC AAC
-----------------------------------------------------------------------------------------
Total sequence length......................... 242709
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTA 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 3 3 0 0 0 0 0 0 0 0 0 0 0
CGT 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
1 AAG + 0 AGA + 1 GAA + 0 CTT + 0 TTC + 0 TCT = 2
1 AAC + 1 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 2
0 ATG + 0 TGA + 1 GAT + 1 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 1 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 1 GCA + 1 CAG + 2 GCT + 3 CTG + 1 TGC = 9
0 ACG + 0 CGA + 0 GAC + 1 CGT + 0 GTC + 0 TCG = 1
0 ACC + 1 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7300503|gb|AE003726.1|AE003726 Drosophila melanogaster genomic scaffold 142000013386035 section 51 of 105, complete sequence
Position Repeat Coverage Repeat
14440 TAA * 8 22/24 TAA TAA TAA CAA TAA TAA TAA CAA
68615 CAT * 7 19/21 CAT CAT CAT CAT CAT CAG CAG
113668 GAT * 11 31/33 GAT GAT GAT GAT GAT GAT GGT GAT GAT GAC GAT
149234 GCT * 7 19/21 GCT GCC GCT GCC GCT GCT GCT
149258 GCT * 7 19/21 GCT GCT GCA GCT GCT GCC GCT
168690 GCA * 8 22/24 GCA GCA TCA GCA GCA GCA ACA GCA
171019 CAG * 12 33/36 CAG CAG CAG CAG CAT CAG CAG CAG CAG CAA CAA CAG
223968 TGC * 7 20/21 TGC TGC TGC TGC TGC TGC TGG
237940 GCA * 7 19/21 GCA CCA ACA GCA GCA GCA GCA
238102 GCA * 7 19/21 GCA ACA GCA GCA CCA GCA GCA
238630 ACG * 7 20/21 ACG ACG ACG ACG ACG ACC ACG
-----------------------------------------------------------------------------------------
Total sequence length......................... 239525
Total number of repeats detected.............. 11
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ACG 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 3 3 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 1 GAT + 1 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 3 GCA + 1 CAG + 2 GCT + 0 CTG + 1 TGC = 7
1 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7300476|gb|AE003725.1|AE003725 Drosophila melanogaster genomic scaffold 142000013386035 section 50 of 105, complete sequence
Position Repeat Coverage Repeat
21890 TGC * 10 27/30 TGC TGC TGC TGC TGC TGC TGC TCC TGC TCG
24531 TGC * 8 22/24 TGC TGC TGT TGC TGT TGC TGC TGC
29539 TCA * 7 20/21 TCA TCA TCA TCA TCT TCA TCA
30027 GAC * 7 19/21 GAC GAC GAC GAC GAT GAC GAT
34148 CAG * 11 31/33 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAC CAT
64313 GCA * 8 22/24 GCA GCA GCA GCA TCA GCA ACA GCA
64608 AAC * 7 19/21 AAC AAT AAT AAC AAC AAC AAC
73951 CAG * 7 19/21 CAG CAG CAG CAG CAG CAT CTG
75018 GCA * 10 27/30 GCA GCA GCA GCA TCA GCA ACA GCA GCA GGA
75160 CAG * 7 19/21 CAG CAA CAA CAG CAG CAG CAG
95905 CAG * 22 60/66 CAG CAG TAG CAG CAG CAG CAG CAG CAG CAG TAG CAG TAG CAG CAG CAG TAG CAG CAG CAG TAG CAC
117993 CTG * 11 30/33 CTG CTG CTG CTG CTG CTG CTG CTG CTG TCG GTG
158008 TGC * 11 30/33 TGC TGC TGC TGC TGC TGC TGC CGC TGA TGT TGC
158190 GCA * 10 27/30 GCA GCA ACA GCA GCA GCA GCA TCA GCA TCA
158478 GCA * 8 22/24 GCA GCT GCA GCA GCA GCA GCA GCC
159974 CAG * 8 22/24 CAG CAG CAG AAG CAG CAG CAG CAA
164117 GAT * 8 23/24 GAT GAT GAT GAT GAT GAT GAT TAT
193386 TCG * 7 20/21 TCG TCG TCG TCG TCT TCG TCG
196055 CAT * 8 23/24 CAT CAT CAT CAT CAT CAT CAT GAT
212378 CCG * 8 22/24 CCG CCG CTG CTG CCG CCG CCG CCG
216726 GCA * 10 27/30 GCA GCA GCA TCA GCA GCA GCG GCA GCA GGA
218104 TCA * 9 25/27 TCA TCA TCA TCA CCA CCA TCA TCA TCA
240804 ACA * 8 22/24 ACA ACA ACA ACA ACA ATA GCA ACA
-----------------------------------------------------------------------------------------
Total sequence length......................... 254846
Total number of repeats detected.............. 23
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 3 1 2 0 0 0 0 0 0 0 0 0 0
TCA 2 2 0 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 5 2 3 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 5 3 1 0 0 0 1 0 0 0 0 0 0
CTG 1 0 1 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 1 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 2
0 ATG + 0 TGA + 1 GAT + 1 CAT + 0 ATC + 2 TCA = 4
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 5 GCA + 5 CAG + 0 GCT + 1 CTG + 3 TGC = 14
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 1 TCG = 2
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 1 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7300442|gb|AE003724.1|AE003724 Drosophila melanogaster genomic scaffold 142000013386035 section 49 of 105, complete sequence
Position Repeat Coverage Repeat
21456 CTG * 7 19/21 CTG CTG CTT CTG CTC CTG CTG
31615 CTC * 9 26/27 CTC CTC CTC CGC CTC CTC CTC CTC CTC
35028 GTT * 7 19/21 GTT GTT GTT GCT GTT GCT GTT
46483 AGC * 10 28/30 AGC AGG AGC AGC AGA AGC AGC AGC AGC AGC
58835 CAA * 7 19/21 CAA CAG CAA CAA CAA CAG CAA
66345 TGT * 7 19/21 TGT TGT TGT TGT TTT TGT GGT
67569 AAC * 7 20/21 AAC AAC AAC AAC AAC AAC AAA
72441 TGC * 7 19/21 TGC TGC TGC TGC TGC TGA TGG
77221 GCT * 11 30/33 GCT GCT GCC GCT GCT GTT GCT GCT GCT GCT GCA
82139 GCT * 8 22/24 GCT GCT GCT GCT GCT GCT GCG GAT
87867 GAG * 8 22/24 GAG AAG GAG GCG GAG GAG GAG GAG
102255 TCA * 13 36/39 TCA TAA TCA TAA TCA TCA TCA TCA TCA TCA TCA TCA TCC
127223 CTG * 7 20/21 CTG CTG CTG CTG CTG CTG ATG
140983 CAA * 8 22/24 CAA CAA CAA CAA CAA CAA CTG CAA
147837 GTC * 8 23/24 GTC GTC GTC GTC GTC GCC GTC GTC
148058 CGA * 8 22/24 CGA CGG CGA CGA CGA CGA CGA CAA
153377 TGT * 7 19/21 TGT TGT TGT TAT TGT TGT TTT
155587 ACA * 11 30/33 ACA TCA GCA ACA ACA ACA ACA ACA ACA AGA ACA
178832 CAG * 10 27/30 CAG CAA CAG CAG CAG CAA CAG CAG CAG CAA
178871 CAA * 7 19/21 CAA CAG CAA CAC CAA CAA CAA
178933 ACA * 7 19/21 ACA ACA ACA ACA TCA ACA CCA
191682 GCC * 7 19/21 GCC GCC GCC GCC GCC GCC GAA
191803 CAG * 8 22/24 CAG CAG CAG CAC CAA CAG CAG CAG
192171 GCA * 7 19/21 GCA GCT GCA GCA GCA GCA GCG
201614 GTC * 9 25/27 GTC GTC GTC GCC GTC GTC GTC GTC GTG
204913 TAA * 7 20/21 TAA TAA TAA TAA TAA TAA CAA
205597 ACG * 7 19/21 ACG ACG ACG ACG ACG ACA ACA
207379 CAC * 7 19/21 CAC CAC CAC CAC CAC CAA CAA
210870 AAC * 7 19/21 AAC AAC AAC AAC AAC AGC AAG
211389 TCG * 7 20/21 TCG TCG TCG TCG TCG TCG TCA
218930 CAT * 7 19/21 CAT CAT CAT CAT CAT CAT CTC
221600 CAA * 9 25/27 CAA CAA CAA CAA CAA CAG CAG CAA CAA
221800 CTG * 16 44/48 CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG ATG TTG CTG TTG CAG
229204 CAT * 7 19/21 CAT CAT CAT CAT CAT CAG CAG
-----------------------------------------------------------------------------------------
Total sequence length......................... 232361
Total number of repeats detected.............. 34
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 2 2 0 0 0 0 0 0 0 0 0 0 0
AGC 1 0 1 0 0 0 0 0 0 0 0 0 0
ACA 2 1 1 0 0 0 0 0 0 0 0 0 0
ACG 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 1 0 0 1 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTC 2 2 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 2 1 1 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 4 4 0 0 0 0 0 0 0 0 0 0 0
CAT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 2 1 1 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 3 2 0 0 1 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CGA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
2 AAC + 2 ACA + 4 CAA + 1 GTT + 0 TTG + 2 TGT = 11
0 ATG + 0 TGA + 0 GAT + 2 CAT + 0 ATC + 1 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 0 CCT + 1 CTC + 0 TCC = 2
1 AGC + 1 GCA + 2 CAG + 2 GCT + 3 CTG + 1 TGC = 10
1 ACG + 1 CGA + 0 GAC + 0 CGT + 2 GTC + 1 TCG = 5
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7300414|gb|AE003723.1|AE003723 Drosophila melanogaster genomic scaffold 142000013386035 section 48 of 105, complete sequence
Position Repeat Coverage Repeat
6442 AAT * 7 19/21 AAT AAT AAT AAT AAT AAC AAA
32983 ATA * 10 27/30 ATA GTA ATA ATA ATA ATA ATA ATA ATA CAA
47542 CTG * 8 22/24 CTG CTG TTG CTG CTG CTG TTG CTG
48001 CTG * 7 20/21 CTG CGG CTG CTG CTG CTG CTG
48165 TGC * 7 19/21 TGC TGC TGC TGA GGC TGC TGC
100812 ACT * 8 23/24 ACT ACT ACT ACT ACA ACT ACT ACT
102575 ACC * 8 22/24 ACC ACC AGC ACC AGC ACC ACC ACC
106081 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAA CAA
171438 TGA * 10 28/30 TGA TGA TGA TGA TGA TGA TGA TGA TGA TAG
173963 TCA * 7 19/21 TCA TCA TCA TCA TCG CCA TCA
178335 GCT * 10 28/30 GCT GCT GCT GTT GCT GCT GCT GCT GCT TCT
186554 AAT * 11 31/33 AAT AAT AAT AAT AAT AAT ATT AAA AAT AAT AAT
193388 GTC * 7 21/21 GTC GTC GTC GTC GTC GTC GTC
195168 TTG * 11 31/33 TTG TTG TTG TTG TTG TTG TTG GTG TTA TTG TTG
198107 CTG * 12 33/36 CTG CTG CTG CTG TTG CTG CTG CTG CTG CTG CTG ATT
210849 AAG * 7 19/21 AAG AAG AAG ATG AGG AAG AAG
211218 TCC * 8 22/24 TCC TCC TCC TCC TCC TCC ACC ACC
218609 AGC * 8 22/24 AGC AGC AGC AGC AGC AGC AAC AAC
221485 TAG * 7 19/21 TAG TAG TAG TAC TAG GAG TAG
228860 TTA * 7 19/21 TTA TTA TTA TTA TTA TTT TTT
236437 CGA * 7 19/21 CGA CGA TGA CGA TGA CGA CGA
-----------------------------------------------------------------------------------------
Total sequence length......................... 253747
Total number of repeats detected.............. 21
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 2 1 1 0 0 0 0 0 0 0 0 0 0
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 0 1 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACT 1 1 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAG 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 0 1 0 0 0 0 0 0 0 0 0 0
TGA 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 1 0 1 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 3 2 1 0 0 0 0 0 0 0 0 0 0
CGA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
2 AAT + 1 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 4
1 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 1
0 AAC + 0 ACA + 0 CAA + 0 GTT + 1 TTG + 0 TGT = 1
0 ATG + 1 TGA + 0 GAT + 0 CAT + 0 ATC + 1 TCA = 2
0 AGT + 0 GTA + 1 TAG + 1 ACT + 0 CTA + 0 TAC = 2
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 1 TCC = 1
1 AGC + 0 GCA + 1 CAG + 1 GCT + 3 CTG + 1 TGC = 7
0 ACG + 1 CGA + 0 GAC + 0 CGT + 1 GTC + 0 TCG = 2
1 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7300390|gb|AE003722.1|AE003722 Drosophila melanogaster genomic scaffold 142000013386035 section 47 of 105, complete sequence
Position Repeat Coverage Repeat
22124 TGA * 7 19/21 TGA TGA TGA TGA TGA TGG TGG
22162 GTG * 7 19/21 GTG GTG TTG GTG GTG GTG ATG
23479 TGC * 7 19/21 TGC TGC TGC TGC TGG AGC TGC
30617 TGC * 9 25/27 TGC TGC TGC TGC TGC TGC TGC TGG TGA
31198 TGC * 7 19/21 TGC GGC TGA TGC TGC TGC TGC
31222 TGC * 11 30/33 TGC TGC TCC TGC TGC TGC TGC TTC TGC TTC TGC
33983 GGT * 7 20/21 GGT GGT GTT GGT GGT GGT GGT
36676 TAT * 8 22/24 TAT TGT TAT TAT TAT TAT TAC TAT
36969 TGC * 9 25/27 TGC TGC TGC TGC TGC TGT TGC TGC CGC
37028 CTG * 11 30/33 CTG CTG CTG TTG CTG CTG CTG CTG ATG TTG CTG
37283 CTG * 9 25/27 CTG CTG CTG TTG CTG CTG CTG CTG TTG
37313 CTG * 10 27/30 CTG CTG ATG CTG CTG CTG CTG CTG GTG TTG
37350 TGC * 11 31/33 TGC TGC TGC TGC TGC TGC TGT TGC TGC TGT TGC
49346 GCC * 8 22/24 GCC GCC GCC GCC GCT GCT GCC GCC
50754 TGT * 10 27/30 TGT TGT TGT TTT TGT TGC TGT TGT TGT GGT
54149 TGT * 7 20/21 TGT TGT TGT TGT TGT TGT TAT
57380 TGC * 18 50/54 TGC TGC TCC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TAC TTT TGC
72088 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CAT
74375 TTA * 7 19/21 TTA TTG TTA TTA TTA TTA TTG
80368 GCA * 11 30/33 GCA GCA GCA GCA GCA GCA GCG GCA GCG GCA ACA
84415 TGA * 11 31/33 TGA TGA TGA TGA TGA TGA TGA TGA TGA CGA GGA
85183 TAA * 7 20/21 TAA AAA TAA TAA TAA TAA TAA
88721 GCA * 7 19/21 GCA GCA GCA GCA GCC GCC GCA
89124 ACA * 8 22/24 ACA ACA ACA ACG ACT ACA ACA ACA
91251 AGC * 10 28/30 AGC AGC AGC AGC ACC AGC AGC AGC AGC TGC
105551 CAG * 7 20/21 CAG CCG CAG CAG CAG CAG CAG
109863 CTG * 7 19/21 CTG CTG CTG CTG CTG CTT TTG
111812 TGT * 7 19/21 TGT TGT TGT TGT TGT TGC TGC
114524 CTG * 7 19/21 CTG TTG TTG CTG CTG CTG CTG
114811 CAA * 7 19/21 CAA CAA AAA CAA CAA CAA CAG
117236 ACA * 7 19/21 ACA ACA GCA TCA ACA ACA ACA
142346 CAG * 7 19/21 CAG CAG CAG TAG CAG AAG CAG
160302 GCA * 7 19/21 GCA GCA GCA GCA GGC GCA GCA
160482 CAG * 12 33/36 CAG CAG CAG CAG CAG CAG CAG CAA CAG CAG CAA CAC
191298 TTA * 7 19/21 TTA TTA TTA TTA CTA TTA TTT
200924 CAA * 7 19/21 CAA CAA CAA CAA CAA CCA GAA
210131 TGC * 8 22/24 TGC TGT TGC TGC TCC TGC TGC TGC
211762 TGC * 8 22/24 TGC GGC TGC TGC TGC TGC TGC TCC
212182 TGC * 12 34/36 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGG TGG TGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 222917
Total number of repeats detected.............. 39
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGC 1 0 1 0 0 0 0 0 0 0 0 0 0
ACA 2 2 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 2 2 0 0 0 0 0 0 0 0 0 0 0
TGA 2 1 1 0 0 0 0 0 0 0 0 0 0
TGT 3 2 1 0 0 0 0 0 0 0 0 0 0
TGC 10 6 3 0 1 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 3 2 1 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 4 3 1 0 0 0 0 0 0 0 0 0 0
CTG 5 3 2 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 0 ATT + 2 TTA + 1 TAT = 4
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 2 ACA + 2 CAA + 0 GTT + 0 TTG + 3 TGT = 7
0 ATG + 2 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 3 GCA + 4 CAG + 0 GCT + 5 CTG + 10 TGC = 23
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 1 GGT + 1 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7300335|gb|AE003721.1|AE003721 Drosophila melanogaster genomic scaffold 142000013386035 section 46 of 105, complete sequence
Position Repeat Coverage Repeat
1735 TTA * 7 19/21 TTA TTG TTG TTA TTA TTA TTA
9434 CAG * 7 19/21 CAG CAG CAG CAG TAG CGG CAG
12790 CAG * 10 27/30 CAG CAG GAG CCG CAG CAG CAG CAG CAG CAA
13003 CAG * 7 19/21 CAG CAG CAG GAG CAG CAA CAG
14045 GCG * 7 19/21 GCG GCG GCG GCA GCA GCG GCG
14115 CCG * 7 19/21 CCG CCG CCA CCG CCG TCG CCG
16433 GCC * 7 19/21 GCC GCC GCC TCC GCT GCC GCC
22791 GCT * 10 27/30 GCT GCT GCT GCT GCT AAT GCT GCT GCT GCC
34574 TGC * 10 27/30 TGC TGC TGA TGC TGC TGC TGC TGT TGC TGG
52001 AGC * 7 19/21 AGC GCC AGC AGC AGC AGC AGC
72481 GAT * 11 30/33 GAT GAT GAT GTT GAT GAT GAT GGT GAT GGT GAT
76078 CAG * 8 23/24 CAG CAG CAG CAG CAG CAG CAG CAA
76274 AGC * 10 27/30 AGC AGC AGC AGC AGC AGC AGC ATC ATC ATC
76375 CAG * 10 27/30 CAG CAG CAA CAG CAG CAG CAG CAA CAG CTG
77876 CAG * 8 23/24 CAG CAG CAG CAG CAG CAG CAG CAA
87809 ACA * 10 28/30 ACA ACA ACA ACA ACA AAA TCA ACA ACA ACA
106445 GAT * 10 27/30 GAT GAT TAT GAT GAC GAT GAT GAT GAT GAG
109241 CAG * 10 27/30 CAG TTG CAG CAG CAG CAG CAG CAG CAG CAA
109345 CAA * 7 19/21 CAA CAA CAA CAA CAA CAG CAG
109367 AGC * 7 20/21 AGC AGC AGC AAC AGC AGC AGC
109627 CAA * 11 30/33 CAA CCC CAA CAA CAA CAA CAA CAA CAA CAA TAA
130247 GGT * 7 19/21 GGT GGT GGT TGT GGT AGT GGT
130815 TGC * 7 19/21 TGC TGC AGG TGC TGC TGC TGC
163271 CAG * 7 19/21 CAG CAT CAG CAG CAT CAG CAG
174979 TTG * 8 22/24 TTG TTG TTG TTC TTC TTG TTG TTG
180092 TTG * 7 21/21 TTG TTG TTG TTG TTG TTG TTG
194537 GCT * 10 28/30 GCT GCT GCT GCC GCT GCT GCT GCG GCT GCT
195046 GTT * 9 25/27 GTT GTT CTT GTT GTT GTT GCT GTT GTT
209812 TGC * 7 19/21 TGC TGG TGC TGC TGG TGC TGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 224896
Total number of repeats detected.............. 29
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGC 3 2 1 0 0 0 0 0 0 0 0 0 0
ACA 1 0 1 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 3 2 1 0 0 0 0 0 0 0 0 0 0
GAT 2 0 2 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 2 0 2 0 0 0 0 0 0 0 0 0 0
GCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 2 1 1 0 0 0 0 0 0 0 0 0 0
CAG 8 5 3 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 2 CAA + 1 GTT + 2 TTG + 0 TGT = 6
0 ATG + 0 TGA + 2 GAT + 0 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
3 AGC + 0 GCA + 8 CAG + 2 GCT + 0 CTG + 3 TGC = 16
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 1 GGT + 0 GTG + 0 TGG = 1
0 GGC + 1 GCG + 0 CGG + 1 GCC + 1 CCG + 0 CGC = 3
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7300322|gb|AE003720.1|AE003720 Drosophila melanogaster genomic scaffold 142000013386035 section 45 of 105, complete sequence
Position Repeat Coverage Repeat
1646 ACA * 8 23/24 ACA ACA AGA ACA ACA ACA ACA ACA
2653 TGT * 7 19/21 TGT TAT TGC TGT TGT TGT TGT
5863 AGG * 8 22/24 AGG AGG AGG AGG CGG AGA AGG AGG
9754 GCT * 10 28/30 GCT GCT GCT GCT GCT GTT GCT GCT GCT GCG
17424 GCA * 8 22/24 GCA GCA GCA GCA GCA GCA GCA GTT
26514 ATC * 7 20/21 ATC ATC ATC ATC ATC ATC ATA
29392 GCC * 7 19/21 GCC GCC ACC GCC GCC GCA GCC
29914 CAG * 7 20/21 CAG CAG CAG CAG CAA CAG CAG
30027 GCA * 9 25/27 GCA GCA ACA GCA GCA GCA GCA GCA ACA
30229 AGC * 7 20/21 AGC AGC GGC AGC AGC AGC AGC
30254 ACA * 8 22/24 ACA ACA GCA ACA ACA ACA GCA ACA
30467 CAG * 7 19/21 CAG CAA CAG CCG CAG CAG CAG
30564 CAG * 10 27/30 CAG CAG CAG CAG CAG CAA CAG CAA CAG CAA
39130 CAA * 9 25/27 CAA CAA CAA CAA CAA CAA CAA CAG CAC
41449 CAG * 8 22/24 CAG CAG CAG CAG CAA CAG CAG CAA
44114 CTC * 8 22/24 CTC CTG CTC CTC CTC CTC CTC CTA
48758 TGC * 11 30/33 TGC TGC TGC TGC TGC TGC TGC TGC TGT TGC TCG
50045 CCT * 7 19/21 CCT CCT CCT CTT TCT CCT CCT
51219 CCA * 7 19/21 CCA CCA CCA CCA CCA CCA ACC
65930 CAG * 8 22/24 CAG CAG CAG CAG CAG CAA CAG CAC
74334 CAG * 12 33/36 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAA CTC CAG
74925 ACA * 12 33/36 ACA ACA ACA ACA ACA ACA ACA ACA GCA ACA GCA GCA
76092 GCA * 11 30/33 GCA GCA GCA ACA GCA GCA GCA GCA GCA CCA CCA
76171 CAG * 7 19/21 CAG CAG CAG CAA CAG CAG CAC
76207 CAG * 7 19/21 CAG CAA CAG CAG CAG CAA CAG
76257 CCA * 10 27/30 CCA CCA CCA CCA CCA CCA TCA TCA CCA TCA
76328 CGA * 8 22/24 CGA CAA CGA CGA CGA CGA CTA CGA
76399 CAG * 7 19/21 CAG CAG CAG CAG CTG CAG CCG
90043 CCT * 7 19/21 CCT CCA CCT CCA CCT CCT CCT
121914 ATC * 10 28/30 ATC ATC ATC ATC ATT ATC ATC ATG ATC ATC
129804 GAT * 8 22/24 GAT GAT GAT GAT GAT GAT GAT GCA
130390 CTC * 8 23/24 CTC CTC CTC CTC CTC CTC CTC CTT
154188 CAA * 7 19/21 CAA GAA CAA CAA CAA CAA CAC
157442 TTA * 12 33/36 TTA TTA TTA TTA TTA ATA TTA TTA TTT TTA TTA TTG
160194 CAG * 10 27/30 CAG CAA CAG CAG CAG CAA CAG CAG CAG CAA
160229 GCA * 8 22/24 GCA GCA GCA GCA ACA GCA GCC GCA
163837 TGA * 7 19/21 TGA TGC TGA TGA TGA TGA TGC
168504 TGC * 7 19/21 TGC TGC TGC TGT TGC TGC AGC
171103 TGC * 9 26/27 TGC TGC TGC TGC TGC TGC TGC TGT TGC
171208 AAC * 9 25/27 AAC ATC GAC AAC AAC AAC AAC AAC AAC
181898 GCA * 9 25/27 GCA GCA GCA GCA GCA GCA GCA GTA GAA
188038 TAT * 7 19/21 TAT TAT TAT TGT TAT TAT TAA
188400 AAT * 8 23/24 AAT AAT AAT AAT AAT AAT AAT AAG
192660 TGC * 7 19/21 TGC TGC TGC TGC TGC TGC TAT
194210 ACA * 11 31/33 ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA CAA
194331 ACA * 7 19/21 ACA CCA ACA GCA ACA ACA ACA
194407 CAG * 10 28/30 CAG CAG CAG CAG CAG CAG CAG CAG CAA CAC
194515 CAC * 8 22/24 CAC CAT CAC CAC CAC CAC CAT CAC
194547 ACA * 7 19/21 ACA ACA ACT CCA ACA ACA ACA
194569 CAA * 8 22/24 CAA CAA CAA CAA CAA CAG CAG CAA
194806 CAG * 7 19/21 CAG CAG CAG CAG CAC CAG CAA
194973 GCA * 18 51/54 GCA GCA GCA GCA GCA ACA GCA GCA GCA GCA GCA GCA GCA GCA GCA ACA ACA GCA
195306 GCA * 11 30/33 GCA GCA GGT GCA GCA GCA GCA GCA GCA ACA GCA
195958 CAG * 11 30/33 CAG CAG CAG CAA CAG CAA CAG CAG CAG CAG CAA
195997 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG TTG CAG
200495 AGC * 7 19/21 AGC AGG AGC AAC AGC AGC AGC
204561 AGC * 8 22/24 AGC AGC AGC AGC AGC AGC AGC AAA
207582 TGC * 9 25/27 TGC TGC TGC TGC TGC TGC TCT TGC TGC
212633 TAT * 8 22/24 TAT CAT TAT TAT TAT TAT TAT TAC
-----------------------------------------------------------------------------------------
Total sequence length......................... 224263
Total number of repeats detected.............. 59
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 2 1 1 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 3 3 0 0 0 0 0 0 0 0 0 0 0
ACA 6 4 2 0 0 0 0 0 0 0 0 0 0
TAT 2 2 0 0 0 0 0 0 0 0 0 0 0
TTA 1 0 1 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 5 4 1 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 7 4 2 0 1 0 0 0 0 0 0 0 0
GCT 1 0 1 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 3 3 0 0 0 0 0 0 0 0 0 0 0
CAG 14 9 5 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 2 2 0 0 0 0 0 0 0 0 0 0 0
CGA 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 2 1 1 0 0 0 0 0 0 0 0 0 0
CCT 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 2 TAT = 4
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 6 ACA + 3 CAA + 0 GTT + 0 TTG + 1 TGT = 11
0 ATG + 1 TGA + 1 GAT + 0 CAT + 2 ATC + 0 TCA = 4
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 0 GAG + 2 CCT + 2 CTC + 0 TCC = 5
3 AGC + 7 GCA + 14 CAG + 1 GCT + 0 CTG + 5 TGC = 30
0 ACG + 1 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 2 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 3
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7300296|gb|AE003719.1|AE003719 Drosophila melanogaster genomic scaffold 142000013386035 section 44 of 105, complete sequence
Position Repeat Coverage Repeat
13450 ACT * 7 19/21 ACT TCT TCT ACT ACT ACT ACT
15995 TTA * 7 20/21 TTA TTA TTA TTA TTA TTA TTT
16026 TTA * 10 27/30 TTA TTA TAT TTA TTA TTA TTA TTA TTA TTT
26546 CAC * 8 23/24 CAC CAC CAC CAC CAC CAC CAA CAC
38474 CCT * 8 22/24 CCT CCT ACT CCT CCT ACT CCT CCT
61510 ACC * 11 30/33 ACC AAC ACC ACC ACC ACC ACC ACC AGC ACC TCC
64121 GCT * 9 25/27 GCT GCT GCT GCT GCT GCT GCT GCT GTG
64241 CTG * 8 22/24 CTG ATG TTG CTG CTG CTG CTG CTG
64490 GCT * 8 22/24 GCT GCT GTT GCT GTT GCT GCT GCT
64518 CTG * 7 19/21 CTG CTT CTG CTG GTG CTG CTG
64749 GTT * 11 30/33 GTT GTT GTT GTT ATT GTT GTT GTT ATT ATT GTT
73952 CTC * 7 19/21 CTC CTC CCC CTG CTC CTC CTC
95852 AGG * 8 22/24 AGG AGG AGG AGG AGG AGG ACG AGC
97422 ACA * 7 19/21 ACA AAA ACA ACA ACA ACA ACT
102740 TGT * 12 33/36 TGT TGT TGT TGT TGT TGT TGT TGT TAT TGT TGT GCT
105422 TCA * 7 19/21 TCA TCA CCA TCA TTA TCA TCA
118188 CAA * 10 27/30 CAA CAA CAA CAA CAA TAA CAA GAA CAA GAA
133292 TCA * 10 27/30 TCA TCA TCA CGA TCA TCA TCA TCA TCA GCA
133322 GCA * 7 20/21 GCA GCA GCA ACA GCA GCA GCA
146231 CAC * 9 25/27 CAC CAG CAC CAC CAC AAC CAC CAC CAC
149858 CAG * 12 34/36 CAG CAG CAG CAG CAG CAG CAA CAG CAG CAG CGG CAG
150066 CAC * 7 20/21 CAC CAC CAC CAC CAC CAC CGC
150254 CAG * 8 23/24 CAG CAG CAG CAG CAG AAG CAG CAG
160941 TTG * 10 29/30 TTG TTG TTA TTG TTG TTG TTG TTG TTG TTG
163435 GTT * 7 20/21 GTT GTT GTG GTT GTT GTT GTT
163634 GTT * 8 22/24 GTT GTT GTA GTT GTT GTT GTT GTG
163781 GTT * 7 19/21 GTT GTT GTT GTT GTT GTG GTG
163992 TTG * 9 25/27 TTG TTG TTG TAA TTG TTG TTG TTG TTG
170679 TGT * 15 42/45 TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGA AGT TGT TTT
172430 GCT * 7 19/21 GCT GCT GGT GCT GCT GCC GCT
175644 TGC * 7 19/21 TGC TGC TGC TGC TGC TGC CAC
175944 CAC * 10 27/30 CAC CAC CGA CAC CAC CAC CAC CAC CAC CGC
178768 TGC * 7 19/21 TGC TGT TGC TGC TGC TGC TGT
179041 ATC * 9 25/27 ATC ATC ACC ATC ATC ATC ATC ATC ATA
186232 CTG * 7 20/21 CTG CTG CTG CTG CTG TTG CTG
186370 CTG * 8 22/24 CTG CTG ATG GTG CTG CTG CTG CTG
186457 CTG * 8 22/24 CTG CTG CTG ATG CTG TTG CTG CTG
186521 TGC * 7 20/21 TGC TGC TGC TGC TGC TGC TGG
186914 GCT * 7 19/21 GCT GCT GCT GCT GAT GGT GCT
190141 TAT * 7 19/21 TAT TAT TAT TAT TAT TAT TTG
190648 TTG * 8 22/24 TTG CTG TTG TTG TTG TTG TTG CTG
193438 CAA * 11 30/33 CAA CAG CAA CAA CAA CAA CAA CAG CAA CCA CAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 218434
Total number of repeats detected.............. 42
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
ACT 1 1 0 0 0 0 0 0 0 0 0 0 0
ACC 1 0 1 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 2 1 1 0 0 0 0 0 0 0 0 0 0
TTG 3 2 1 0 0 0 0 0 0 0 0 0 0
TGT 2 0 1 1 0 0 0 0 0 0 0 0 0
TGC 3 3 0 0 0 0 0 0 0 0 0 0 0
TCA 2 1 1 0 0 0 0 0 0 0 0 0 0
GTT 4 3 1 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 4 4 0 0 0 0 0 0 0 0 0 0 0
CAA 2 0 2 0 0 0 0 0 0 0 0 0 0
CAG 2 1 1 0 0 0 0 0 0 0 0 0 0
CAC 4 3 1 0 0 0 0 0 0 0 0 0 0
CTG 5 5 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 2 TTA + 1 TAT = 3
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 2 CAA + 4 GTT + 3 TTG + 2 TGT = 12
0 ATG + 0 TGA + 0 GAT + 0 CAT + 1 ATC + 2 TCA = 3
0 AGT + 0 GTA + 0 TAG + 1 ACT + 0 CTA + 0 TAC = 1
1 AGG + 0 GGA + 0 GAG + 1 CCT + 1 CTC + 0 TCC = 3
0 AGC + 1 GCA + 2 CAG + 4 GCT + 5 CTG + 3 TGC = 15
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
1 ACC + 0 CCA + 4 CAC + 0 GGT + 0 GTG + 0 TGG = 5
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7300262|gb|AE003718.1|AE003718 Drosophila melanogaster genomic scaffold 142000013386035 section 43 of 105, complete sequence
Position Repeat Coverage Repeat
55755 GCA * 8 22/24 GCA GCA GCA GCA GCA GCA GTG GCA
101456 CAG * 8 22/24 CAG CAG CAG CAA CAA CAG CAG CAG
101513 CAG * 7 20/21 CAG CAG CAG CAG CAG CAG CAT
117042 AGC * 8 22/24 AGC AGC AGG AGC AGC AGC AGC ATC
139152 TGC * 8 22/24 TGC TGC CGC TGC TGC TGC TGC TGA
143357 TGA * 7 19/21 TGA TGA TGA TGA GGT TGA TGA
175710 ATC * 10 28/30 ATC CCC ATC ATC ATC ATC ATC ATC ATC ATC
182529 ATT * 11 30/33 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATA TTA
198476 ACC * 10 27/30 ACC ACC ACT ACC ACC GCC ACC ACC ACC TCC
211589 CTG * 7 19/21 CTG CTG CTG CTG CTG TTG CTT
238814 GCC * 7 19/21 GCC GCC GCC GCC GCC GCT GCT
238840 CAA * 7 19/21 CAA CAA TAA CAA CAA CGA CAA
242455 CTG * 8 22/24 CTG CTG TTG CTG CTG CTG CTG TTG
248743 CTT * 7 19/21 CTT CTT CTT CTT TGT CTT CTT
250236 GCC * 7 19/21 GCC GCC GCT GCC GCT GCC GCC
250680 TGC * 7 19/21 TGC TGC TGT TGC TGC TGG TGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 253172
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATT 1 0 1 0 0 0 0 0 0 0 0 0 0
ATC 1 0 1 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACC 1 0 1 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCC 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 1 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 1
0 AAC + 0 ACA + 1 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 1 TGA + 0 GAT + 0 CAT + 1 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 1 GCA + 2 CAG + 0 GCT + 2 CTG + 2 TGC = 8
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
1 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 2 GCC + 0 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7300241|gb|AE003717.1|AE003717 Drosophila melanogaster genomic scaffold 142000013386035 section 42 of 105, complete sequence
Position Repeat Coverage Repeat
35104 ACA * 7 19/21 ACA ATA ACA ACA ACA ACA ACG
45761 GAT * 8 23/24 GAT AAT GAT GAT GAT GAT GAT GAT
48580 TGC * 7 19/21 TGC TGC CAC TGC TGC TGC TGC
52801 CAG * 8 22/24 CAG CAG CAG CAG CAG CTA CAG CAG
86530 AGC * 9 25/27 AGC AGC AGC AGC AGC AGC AGA AGC GGC
89945 TGA * 7 19/21 TGA TGA TGA TGG CGA TGA TGA
106054 GAT * 10 27/30 GAT GAT GAT GAT GAT GAT GAT GAT GAC AAG
114685 ACA * 8 22/24 ACA GCA GCA ACA ACA ACA ACA ACA
138921 CAG * 8 22/24 CAG CAG CAG CAG CAG CAA CAA CAG
151522 AGC * 7 19/21 AGC AAC AGC AGC AGC AGC CGC
153128 TTG * 7 19/21 TTG TTG TTG TTG TTA TTG TTC
182230 TGA * 7 19/21 TGA TGA TGA TGA CGA TGA TCA
190746 CTG * 7 19/21 CTG CTG CTG CTG CTG CAG TTG
208843 ATT * 51 139/153 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATA AAG GTA TTA TTA TAT CAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 217756
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATT 1 0 0 0 0 0 0 0 0 0 0 0 1
AGC 2 2 0 0 0 0 0 0 0 0 0 0 0
ACA 2 2 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 2 1 1 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 1 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 2 ACA + 0 CAA + 0 GTT + 1 TTG + 0 TGT = 3
0 ATG + 2 TGA + 2 GAT + 0 CAT + 0 ATC + 0 TCA = 4
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
2 AGC + 0 GCA + 2 CAG + 0 GCT + 1 CTG + 1 TGC = 6
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7300211|gb|AE003716.1|AE003716 Drosophila melanogaster genomic scaffold 142000013386035 section 41 of 105, complete sequence
Position Repeat Coverage Repeat
6667 CCG * 7 19/21 CCG CCG CCG CCT CCG CCT CCG
6988 CCA * 7 19/21 CCA CCA CCA CCA CCA CCA CAC
7313 CCA * 10 27/30 CCA CAA CCC CCA CCA CCA CCA CCA CCA CCG
22073 CAG * 7 19/21 CAG CAG CAG CAA CAT CAG CAG
64737 ACA * 7 19/21 ACA ACC ACA ACC ACA ACA ACA
98791 ATA * 9 25/27 ATA ATA ATA ATA GCA ATA ATA ATA ATA
99377 CAA * 7 19/21 CAA CAA CAA CAA CAA CAA CGG
119790 GCT * 7 19/21 GCT GGA GCT GCT GCT GCT GCT
119849 TGC * 7 19/21 TGC TGT TGC TGC TGC TGC TGT
134232 GGA * 7 19/21 GGA GGA GGA CGA TGA GGA GGA
138345 TTG * 8 22/24 TTG TTG CTG TTG TTG TTG TTG TTT
170284 GCT * 8 22/24 GCT GCT GCT TCT GCT GCT GCA GCT
178474 TTG * 7 19/21 TTG CTG TTG TTG TTG ATG TTG
184903 CCT * 7 19/21 CCT CCT CCT CCT CCT CCA CCG
193727 TTA * 7 19/21 TTA TTA TTA TTA TTA TTT TTG
205046 TGC * 11 30/33 TGC TGC TGT TGC TGC TGC TGC TGC CGC TGC TGT
225199 TGC * 8 22/24 TGC TGC CAC TGC TGC TGC TGC TGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 225968
Total number of repeats detected.............. 17
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 3 2 1 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 2 1 1 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 1 CAA + 0 GTT + 2 TTG + 0 TGT = 4
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 0 GAG + 1 CCT + 0 CTC + 0 TCC = 2
0 AGC + 0 GCA + 1 CAG + 2 GCT + 0 CTG + 3 TGC = 6
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 2 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 1 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7300193|gb|AE003715.1|AE003715 Drosophila melanogaster genomic scaffold 142000013386035 section 40 of 105, complete sequence
Position Repeat Coverage Repeat
10208 TGC * 12 33/36 TGC TGT TGC TGC TGC TGC TGT TGC TGC TGC TGT TGC
106361 AGC * 7 19/21 AGC AGC AGC AGC AGC AGC AAG
132736 CTG * 7 20/21 CTG CTG TTG CTG CTG CTG CTG
132920 TGC * 7 19/21 TGC TGC TGT TGC TGC TGC TGT
133118 TGC * 8 23/24 TGC TGC TGC TGT TGC TGC TGC TGC
133220 TGC * 7 19/21 TGC TGC AGA TGC TGC TGC TGC
133250 TGC * 15 41/45 TGC TGC TGC TCC TGC TGC TGC TGC TGC TGT TGC TGC TGC TGC AGA
134442 TGT * 7 19/21 TGT TGT TGT AGT TGC TGT TGT
146623 GCT * 7 19/21 GCT GCC GCT GCC GCT GCT GCT
150311 ACA * 11 30/33 ACA ACA ACA ACA ACA ACA GCA ACA AGA ACA GCA
178485 AAT * 7 19/21 AAT TAT AAT AAT TAT AAT AAT
202598 GAT * 7 20/21 GAT GAT GAT GAT GAT GAT TAT
-----------------------------------------------------------------------------------------
Total sequence length......................... 223098
Total number of repeats detected.............. 12
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 0 1 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 5 3 1 1 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 0 CAA + 0 GTT + 0 TTG + 1 TGT = 2
0 ATG + 0 TGA + 1 GAT + 0 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 0 GCA + 0 CAG + 1 GCT + 1 CTG + 5 TGC = 8
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7300166|gb|AE003714.1|AE003714 Drosophila melanogaster genomic scaffold 142000013386035 section 39 of 105, complete sequence
Position Repeat Coverage Repeat
2440 GAG * 7 19/21 GAG CAG GAG GAG GAG GAG GAC
23627 AGC * 12 33/36 AGC AAC ATC AGC AGC AGC AGC AGC AGC CGC AGC AGC
23775 TGC * 7 20/21 TGC TGC TGC TGC TGC TGC TGG
24753 TGC * 10 28/30 TGC TGC TGA TGC TGC TGC TGA TGC TGC TGC
24786 TGC * 8 22/24 TGC TCT TGC TGC TGC TGC TGC TGC
26401 TGT * 8 22/24 TGT TGT TGT TGT TGT TGT TGG TGG
72649 TGG * 9 25/27 TGG CGG TGG TGG TGG TGG TGG TGG TGC
90916 CCG * 11 30/33 CCG CCG CCG CCG CAG CCG CTG CCG CCG CCG CCT
118032 AGC * 8 22/24 AGC TGC AGC AGC AGC AGC AGC AAC
118119 GCA * 8 22/24 GCA GCA GCA GCA GCA TCA GCA GCG
118332 GCA * 10 27/30 GCA GCA GCA GCA GCA GCA GCA ACA GCA ACC
127714 CCG * 7 19/21 CCG CCA CCG CCG CCA CCG CCG
135700 TTC * 7 19/21 TTC TTC TTC TTC TTC TTT ATC
142289 CAA * 8 22/24 CAA CAC CAA CAA CAG CAA CAA CAA
142837 AAT * 8 22/24 AAT AAT AAT AAT TAT AAT AAA AAT
161177 GTT * 8 22/24 GTT GTT GTT GCT GCT GTT GTT GTT
166275 ATT * 7 19/21 ATT ATT ATT ATT ATT TTT ATG
-----------------------------------------------------------------------------------------
Total sequence length......................... 231403
Total number of repeats detected.............. 17
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 1 1 0 0 0 0 0 0 0 0 0 0
TTC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 3 2 1 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 1 1 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CCG 2 1 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 1 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 1 TTC + 0 TCT = 1
0 AAC + 0 ACA + 1 CAA + 1 GTT + 0 TTG + 1 TGT = 3
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 1
2 AGC + 2 GCA + 0 CAG + 0 GCT + 0 CTG + 3 TGC = 7
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 1 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 2 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7300133|gb|AE003713.1|AE003713 Drosophila melanogaster genomic scaffold 142000013386035 section 38 of 105, complete sequence
Position Repeat Coverage Repeat
775 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAT CAA
25147 GCA * 7 19/21 GCA GCA GCA GTA GCA GCA GGA
34305 TGC * 7 19/21 TGC TGC TGC TGC TGC TGT TGT
34432 GCT * 7 19/21 GCT GCT GCT GTT GTT GCT GCT
39007 AGC * 7 19/21 AGC AGC AGC AGC AGC AGG CGC
47222 CGT * 8 22/24 CGT CGT CGT CGT CGT TGT CGT TGT
59204 TCA * 7 19/21 TCA TCG TCA TCA TCA TCA GCA
64679 CAC * 9 25/27 CAC CAT CAC CAA CAC CAC CAC CAC CAC
66106 AAT * 7 20/21 AAT AAC AAT AAT AAT AAT AAT
144265 AGC * 12 34/36 AGC AGT AGC AGC AGC AGC AGC AGC AGC AGC AGC AAC
169422 TCA * 8 22/24 TCA TCA TCA TCA TCA TCA TGA TGA
171580 AAC * 8 22/24 AAC AAC AGC AAC AAC AAC AGC AAC
171615 CAG * 8 22/24 CAG CAG CAA CAG CAG CAG CAG CAA
178450 CTC * 8 22/24 CTC CGC CTC CTC CTA CTC CTC CTC
199342 GTT * 7 19/21 GTT GTT GTT GTT GGT GTT GTG
200711 TAT * 8 23/24 TAT TAT TAT TAT TAT TGT TAT TAT
-----------------------------------------------------------------------------------------
Total sequence length......................... 225844
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 1 1 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 2 2 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CGT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 0 CAA + 1 GTT + 0 TTG + 0 TGT = 2
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 2 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 1
2 AGC + 1 GCA + 2 CAG + 1 GCT + 0 CTG + 1 TGC = 7
0 ACG + 0 CGA + 0 GAC + 1 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7300108|gb|AE003712.1|AE003712 Drosophila melanogaster genomic scaffold 142000013386035 section 37 of 105, complete sequence
Position Repeat Coverage Repeat
24343 AGC * 10 27/30 AGC AGC AGC AAC TGC AGC AGC AGC AGC AAC
25676 CAG * 13 36/39 CAG CAG CAG CAG CAG CAG CAG CAT CAG CAG AAT CAG CAG
26758 ACA * 8 22/24 ACA ACC ACA ACA ACA ACA ACC ACA
43136 CAG * 7 19/21 CAG CAG CAA CAT CAG CAG CAG
43440 CAA * 7 19/21 CAA CAA CAA GAG CAA CAA CAA
46725 TCA * 8 22/24 TCA TCA TTA TCA TCA TCA TCA CCA
54956 TCG * 8 22/24 TCG TCG TCG TCG TCG TCG TCT TCT
71365 GCA * 8 22/24 GCA ACA GCA GCA GCA GCA GCA GCT
77129 GCA * 7 19/21 GCA GCA GTA GCA GCA GCG GCA
90334 AGC * 13 36/39 AGC AGC AGC AGC AGC AGC AGC AGC AGC AGC AAT TGC AGC
91427 TGC * 8 22/24 TGC TGC TGC TGC TGC TGT TGT TGC
96693 CCA * 7 20/21 CCA CCA CCA CCA CCA CCA CCC
99510 AGC * 7 19/21 AGC AGC AGC AGC AGC AGA AGA
100774 CTG * 7 19/21 CTG CTG CTA CTG CTG CTG TTG
102572 TGC * 7 20/21 TGC TGC TGC TGC TGC TGC CGC
102780 GCT * 7 19/21 GCT GCT TCA GCT GCT GCT GCT
105746 ACA * 8 22/24 ACA ACA ACG ACA ACA GCA ACA ACA
112935 AGG * 7 19/21 AGG AGG GGG AGG AGG ATG AGG
113126 AAC * 7 19/21 AAC GAC AAC TAC AAC AAC AAC
113425 AAT * 7 19/21 AAT AAT AAA AAT AAT AAT AAG
115763 CGT * 7 19/21 CGT CGT CGT CGT CGG CGT CAT
119638 AGA * 7 19/21 AGA AGA AGA AGA AGC AGA AGC
120398 GCT * 7 19/21 GCT GCT GCT GCT GCC TCT GCT
121371 TGT * 7 19/21 TGT TGT TGT TGC TGG TGT TGT
129930 CAG * 7 19/21 CAG CAG TAG CAG AAG CAG CAG
133848 TGT * 7 19/21 TGT TGT TGT CGT TGT TGT TGC
138202 TGC * 7 19/21 TGC TGC TGT TGC TGC TGC TGT
138410 ATC * 7 20/21 ATC ATC ATC ATC ATC ATC AGC
142233 GCA * 12 33/36 GCA GCA GCA GCA GCC GCA GCA GCA GCA GCG GCG GCA
142296 CAG * 8 23/24 CAG CAG CAG CAG CAG CAG CAG CAA
158681 CAA * 7 19/21 CAA CAA CAA CAA CAA CAG CAG
182839 TGA * 7 19/21 TGA TGA CGA TGT TGA TGA TGA
186245 TTA * 7 19/21 TTA TTA TTA TTT TTA TTA TTT
190282 GAC * 8 22/24 GAC GAC GAC AAC GAC GAC GAC GAG
204224 AAT * 7 19/21 AAT AAT TAA AAT AAT AAT AAT
212038 ACC * 7 19/21 ACC ACC ACC GCC CCC ACC ACC
220082 TCA * 8 22/24 TCA TCG TCA TCA TCA TCA TCA TGA
-----------------------------------------------------------------------------------------
Total sequence length......................... 226200
Total number of repeats detected.............. 37
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 2 2 0 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGA 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 3 1 1 1 0 0 0 0 0 0 0 0 0
ACA 2 2 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 3 3 0 0 0 0 0 0 0 0 0 0 0
TCA 2 2 0 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 3 2 1 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 4 3 0 1 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CGT 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
2 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 3
0 AAG + 1 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 1
1 AAC + 2 ACA + 2 CAA + 0 GTT + 0 TTG + 2 TGT = 7
0 ATG + 1 TGA + 0 GAT + 0 CAT + 1 ATC + 2 TCA = 4
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 1
3 AGC + 3 GCA + 4 CAG + 2 GCT + 1 CTG + 3 TGC = 16
0 ACG + 0 CGA + 1 GAC + 1 CGT + 0 GTC + 1 TCG = 3
1 ACC + 1 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7300075|gb|AE003711.1|AE003711 Drosophila melanogaster genomic scaffold 142000013386035 section 36 of 105, complete sequence
Position Repeat Coverage Repeat
32047 CTG * 7 19/21 CTG CTG CTG CAG CTG CTC CTG
50228 AAT * 7 19/21 AAT AAT AAT AAT AAT AAT CTT
57886 GTC * 8 22/24 GTC GTC GTG GTC GTC GTC GTC GTT
64195 TGC * 10 27/30 TGC TGC TGC TGC TGC TGC TGT TGT TGC GGC
89276 TGC * 7 19/21 TGC TGT TGC TGC TGC GGC TGC
115183 AAT * 8 22/24 AAT ACT AAC AAT AAT AAT AAT AAT
115380 GCA * 7 19/21 GCA GCA GCA ACA GCA TCA GCA
115668 GGC * 7 19/21 GGC AGC GGC GGC GGC AGC GGC
115930 CAG * 10 27/30 CAG CAA CAG CAG CAG CAG CAG CAG CAA CAA
118676 CAG * 7 19/21 CAG TTG CAG CAG CAG CAG CAG
119831 CAG * 10 27/30 CAG CAG CAG CAC CAT CAG CAG CAG CAG CAA
119876 CAG * 11 30/33 CAG CAG CAG CAA CTG CAG CAG CAG CAG CAG CAA
122892 CAG * 7 19/21 CAG TAC CAG CAG CAG CAG CAG
123098 GCA * 7 20/21 GCA GCA GCA TCA GCA GCA GCA
123193 ACA * 9 25/27 ACA ATA ACA ATA ACA ACA ACA ACA ACA
123230 CAA * 8 22/24 CAA CAA CAA CAA CAA CAA CAA TAG
123312 AGC * 7 19/21 AGC AGC AGC AGC AAC AGC GGC
123387 GCA * 7 19/21 GCA GCA GCA GCA GCA GCG GCG
123687 CAG * 7 19/21 CAG CAA CAA CAG CAG CAG CAG
123795 CAG * 10 28/30 CAG CAG CAG CAG CAA CAG CTG CAG CAG CAG
135132 CAG * 7 20/21 CAG CAG CAG CAG CAG CAG CTG
136662 GCA * 12 33/36 GCA GCA GCA GCA GCA GCA ACA GCA ACA GCA ACA GCA
136829 AGC * 7 19/21 AGC AGC AGG AGC AGC AGC AAC
137547 CAG * 14 38/42 CAG CAG CAG CAG CAC CAG CAG CAG CAG CAT CAG CAG CAA CAC
142660 GAT * 8 22/24 GAT GAC GAC GAT GAT GAT GAT GAT
156302 CCT * 8 23/24 CCT CCT CCT CCT CCT CCT CCT CCA
160138 GCA * 11 30/33 GCA GCA GCA GCA GCA GCA GCA ACA GCA ACA ACA
160172 CAG * 9 25/27 CAG CAA CAG CAG CAG CAG CAG CAG CAA
189822 GTT * 7 19/21 GTT GTT GTT GTT GTT GTT GCG
227605 GCA * 9 25/27 GCA GCA GCA GCA GCA GCA ACA GCA ACA
234702 TGC * 7 19/21 TGC CGT TGC TGC TGC TGC TGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 236427
Total number of repeats detected.............. 31
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 2 2 0 0 0 0 0 0 0 0 0 0 0
AGC 2 2 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 3 2 1 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTC 1 1 0 0 0 0 0 0 0 0 0 0 0
GGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 6 4 2 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 10 5 4 1 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
2 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 1 CAA + 1 GTT + 0 TTG + 0 TGT = 3
0 ATG + 0 TGA + 1 GAT + 0 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 1 CCT + 0 CTC + 0 TCC = 1
2 AGC + 6 GCA + 10 CAG + 0 GCT + 1 CTG + 3 TGC = 22
0 ACG + 0 CGA + 0 GAC + 0 CGT + 1 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
1 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7300041|gb|AE003710.1|AE003710 Drosophila melanogaster genomic scaffold 142000013386035 section 35 of 105, complete sequence
Position Repeat Coverage Repeat
19270 TGC * 9 25/27 TGC TGC TGT TGC TGC TGC TGC TGC TGT
52351 CAG * 10 27/30 CAG GAG CAG CAG CAG AAG CAG CAG CAG CTG
64243 TGA * 8 22/24 TGA TGA TGA TGA TGA CAA TGA TGA
64928 GAT * 11 30/33 GAT GAT GAC GAT GAT GAT GAT GAT GAT GAC GAG
151457 GAT * 8 22/24 GAT GAT GAT GAT GAT GAT GAC GTT
-----------------------------------------------------------------------------------------
Total sequence length......................... 224939
Total number of repeats detected.............. 5
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 2 1 1 0 0 0 0 0 0 0 0 0 0
CAG 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 1 TGA + 2 GAT + 0 CAT + 0 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 1 CAG + 0 GCT + 0 CTG + 1 TGC = 2
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7300026|gb|AE003709.1|AE003709 Drosophila melanogaster genomic scaffold 142000013386035 section 34 of 105, complete sequence
Position Repeat Coverage Repeat
30920 AGC * 14 39/42 AGC ATC AGC AGC AGC CGC AGC AGC AGC AGC AGC CGC AGC AGC
83068 ATG * 8 22/24 ATG AGG ATG ATG ATT ATG ATG ATG
97629 CTG * 7 19/21 CTG CTG ATG CTG ATG CTG CTG
130081 GCT * 8 22/24 GCT GCT GGT GCT GTT GCT GCT GCT
133212 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CAT
136440 GAT * 8 22/24 GAT GAT AAT GAT GAT GGT GAT GAT
214352 CAT * 12 33/36 CAT CAT CAT CAT CAT CAT CAT CAT CGT ACT CAT CAT
-----------------------------------------------------------------------------------------
Total sequence length......................... 223652
Total number of repeats detected.............. 7
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 0 0 1 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 0 1 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
1 ATG + 0 TGA + 1 GAT + 1 CAT + 0 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 0 GCA + 1 CAG + 1 GCT + 1 CTG + 0 TGC = 4
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7299964|gb|AE003708.1|AE003708 Drosophila melanogaster genomic scaffold 142000013386035 section 33 of 105, complete sequence
Position Repeat Coverage Repeat
55568 CAG * 11 30/33 CAG CAG CAG CAA CAG CAA CAG CAG CAG CAG CAT
55808 CAG * 7 19/21 CAG CAG CAG CAG CAA CAG CAA
55973 CAG * 8 22/24 CAG CAG CAC CAG CAG CAG CAG CAA
57116 CAG * 7 20/21 CAG CAA CAG CAG CAG CAG CAG
97295 AAC * 7 19/21 AAC AGC GAC AAC AAC AAC AAC
98951 CAA * 8 22/24 CAA CAA CTA CAA CAA CAA CAA CCA
99751 ATG * 7 19/21 ATG ACG ATG ATA ATG ATG ATG
119759 GGT * 8 22/24 GGT GGC AGT GGT GGT GGT GGT GGT
121350 CCT * 7 19/21 CCT CCT CCT CCT CCG CCT CCG
125386 GCA * 7 19/21 GCA GCA ATA GCA GCA GCA GCA
126516 AAT * 10 27/30 AAT AAT AAT AAT AAT AAT AAC AAC AAT AAC
178320 CAG * 10 27/30 CAG CAG CAC CAG CAG CAG CAG CAG CAG AAA
182695 CAT * 7 19/21 CAT CAT CAC CAG CAT CAT CAT
185826 GGA * 7 19/21 GGA GGA AGC GGA GGA GGA GGA
185850 GGC * 8 22/24 GGC GTC GGC GGC GGC GGC GGC GGT
191390 GCA * 7 20/21 GCA GCA GCA GCA ACA GCA GCA
191918 CTA * 8 23/24 CTA CTA CTA CTA CTA CTA CTA CTT
194041 CAG * 8 23/24 CAG CAG CAA CAG CAG CAG CAG CAG
196825 GTT * 7 19/21 GTT GTT GTT CTT GTT GTT GTA
197815 AAC * 7 19/21 AAC AAC AAA AAC AAC AAC AGC
197969 ACT * 7 20/21 ACT ACT ACT ACT ACT AAT ACT
201673 GCA * 12 34/36 GCA GCA GCA ACA GCA ACA GCA GCA GCA GCA GCA GCA
201755 CAG * 8 22/24 CAG CAG CAG CAG CAA CAG CAG CAA
202246 GCA * 8 22/24 GCA GCA GCA GCA GCA GCA GCC ACA
202470 TTA * 7 19/21 TTA TTA TTA CTA TTA TGA TTA
216338 CAG * 8 22/24 CAG CAG CAA CAG CAG CAA CAG CAG
216365 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CAA
216542 CAG * 14 39/42 CAG CAG CAA CAG CAG CAG CAG CAG CAG CAG CAG CAG CAT CAA
216631 GCA * 12 33/36 GCA ACA GCA GCA GCA GCA GCA GCA ACA ACA GCA GCA
222081 TCA * 7 19/21 TCA TAA TCA TCA TCA TCG TCA
224853 TGT * 7 19/21 TGT GAT TGT TGT TGT TGT TGT
225751 GTT * 10 28/30 GTT GTT GCT GCT GTT GTT GTT GTT GTT GTT
226799 TGC * 7 20/21 TGC TGT TGC TGC TGC TGC TGC
226835 TGC * 8 22/24 TGC TGC TGC TGC TGA TGC TGC AGC
226992 GCT * 7 19/21 GCT GCT GCT GCT GCT GCT GGG
227027 TGC * 13 36/39 TGC TGC TGC TGC TGC TGG TGT TGC TGC TGC TGC TGC TGG
232407 CAT * 8 22/24 CAT CAT CAT CAT CAT CAT CGG CAT
-----------------------------------------------------------------------------------------
Total sequence length......................... 235414
Total number of repeats detected.............. 37
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 0 1 0 0 0 0 0 0 0 0 0 0
AAC 2 2 0 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
ACT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 3 2 0 1 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 2 1 1 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 5 3 2 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 10 7 2 1 0 0 0 0 0 0 0 0 0
CTA 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
2 AAC + 0 ACA + 1 CAA + 2 GTT + 0 TTG + 1 TGT = 6
1 ATG + 0 TGA + 0 GAT + 2 CAT + 0 ATC + 1 TCA = 4
0 AGT + 0 GTA + 0 TAG + 1 ACT + 1 CTA + 0 TAC = 2
0 AGG + 1 GGA + 0 GAG + 1 CCT + 0 CTC + 0 TCC = 2
0 AGC + 5 GCA + 10 CAG + 1 GCT + 0 CTG + 3 TGC = 19
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 1 GGT + 0 GTG + 0 TGG = 1
1 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7299945|gb|AE003707.1|AE003707 Drosophila melanogaster genomic scaffold 142000013386035 section 32 of 105, complete sequence
Position Repeat Coverage Repeat
64788 GAT * 7 19/21 GAT GAT GAT GAT GAT GAT GGC
120753 TAA * 7 19/21 TAA TAA TAA TAA TAT TAA TAT
168309 GTT * 8 22/24 GTT GTT GTT GTT GTT GTT GTG GTA
168341 TGT * 7 19/21 TGT TGT TGT TGT TGT GGT AGT
168368 TGT * 7 19/21 TGT TGT TGT TGT TGT GGT AGT
168395 TGT * 7 19/21 TGT TGT TGT TGT TGT GGT AGT
168449 TGT * 10 27/30 TGT TGT TGT TGT TGT TGT TGT CGT AGT AGT
179000 AAC * 7 19/21 AAC AAC AGC AGC AAC AAC AAC
201623 AAT * 8 22/24 AAT AAT AAT AAT AAT ATC AAT AAT
205015 AGT * 9 25/27 AGT AGC AGT AGT AGT AGT AGT AGT AAT
207736 TTG * 8 22/24 TTG TTG TTG TTG TTG TTG ATT TTG
222019 GCA * 8 23/24 GCA GCA GCA GCA GCA GCA GCA ACA
-----------------------------------------------------------------------------------------
Total sequence length......................... 229655
Total number of repeats detected.............. 12
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 4 3 1 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 1 TAA + 0 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 0 CAA + 1 GTT + 1 TTG + 4 TGT = 7
0 ATG + 0 TGA + 1 GAT + 0 CAT + 0 ATC + 0 TCA = 1
1 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 1 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 1
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7299915|gb|AE003706.1|AE003706 Drosophila melanogaster genomic scaffold 142000013386035 section 31 of 105, complete sequence
Position Repeat Coverage Repeat
797 TTG * 7 19/21 TTG TCG TTG TTG TTG TTG CTG
5956 AGC * 7 19/21 AGC AGC AGT CGC AGC AGC AGC
10091 TGT * 8 22/24 TGT TGT TGT TGT TGC TGT TGT TGA
14241 GTT * 8 22/24 GTT GTT GTT GTT GTT GTT GTT TTC
14449 AAC * 7 20/21 AAC AAC AAC AAC AAC AAC AAG
19386 ATA * 7 20/21 ATA ATA ATA ATA ATA ATA ATT
19833 TGC * 7 19/21 TGC TGC TGC AGC TGC TGC TGA
24924 GAG * 7 19/21 GAG GAG GAG CAG CAG GAG GAG
28960 AAC * 7 19/21 AAC AAC AAC AAC AAC AAC AGT
46910 GCA * 7 19/21 GCA GCA GCA GCA ACA GCA ACA
50110 CAT * 7 19/21 CAT CAT CAT CTC CAT CAT CAT
61835 GCA * 9 25/27 GCA GCA GCA GCA GTA GCA GCA GCA ACA
68872 ATC * 10 27/30 ATC ATC ATC ATC ATC ATC ATC ATT ATT AGC
74985 CAC * 7 19/21 CAC CAC CTG CAC CAC CAC CAC
78983 CAA * 7 19/21 CAA AAA CAA CAA CAA CAA CAG
104253 TGC * 7 20/21 TGC TGC TGC TGC TGT TGC TGC
107211 CTG * 7 20/21 CTG CGG CTG CTG CTG CTG CTG
107677 TCC * 8 22/24 TCC TCC TCC CCG TCC TCC TCC TCC
113427 GCT * 9 25/27 GCT GCT GTT GCT GCG GCT GCT GCT GCT
117233 TGT * 7 19/21 TGT TGT TGA TGT GGT TGT TGT
135589 TAA * 7 19/21 TAA TAA TAA TAA CAA TAA TAT
146373 CTG * 14 38/42 CTG CTG CTG CTG CTG CTA CTG CTG CTG CGG CTG CTG CTG CCC
167014 CAG * 7 19/21 CAG CAG CAA CAA CAG CAG CAG
182282 GAG * 7 20/21 GAG GAG GGG GAG GAG GAG GAG
-----------------------------------------------------------------------------------------
Total sequence length......................... 254987
Total number of repeats detected.............. 24
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 2 2 0 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 0 1 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 2 2 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 2 1 0 1 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 1 TAA + 0 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
2 AAC + 0 ACA + 1 CAA + 1 GTT + 1 TTG + 2 TGT = 7
0 ATG + 0 TGA + 0 GAT + 1 CAT + 1 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 2 GAG + 0 CCT + 0 CTC + 1 TCC = 3
1 AGC + 2 GCA + 1 CAG + 1 GCT + 2 CTG + 2 TGC = 9
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7299886|gb|AE003705.1|AE003705 Drosophila melanogaster genomic scaffold 142000013386035 section 30 of 105, complete sequence
Position Repeat Coverage Repeat
15233 ATG * 7 19/21 ATG ATG ATG ACG ATG ATG ATT
22295 CTG * 10 27/30 CTG CTG CTG ATG CTG CTG CTG CTG CTG GGG
24852 TGT * 7 19/21 TGT TGT TGT AGT GGT TGT TGT
28191 CAG * 10 27/30 CAG CAA CAG CAA CAG CAG CAG CAG CAG CGG
49082 TGC * 7 20/21 TGC TGC TGC TGC TGC TCC TGC
64916 CCT * 8 22/24 CCT CCT CCT CCT CCT CCT CAT CCG
96393 TGT * 8 22/24 TGT TGT TGT TGT TGT TGT TGT TTC
115869 ACG * 7 20/21 ACG ACG ACG ACG ACG ACG GCG
143783 AAC * 8 22/24 AAC AAC AAC AAC AAC AGC AGC AAC
146175 GTG * 7 19/21 GTG ATG GTG GTG GTA GTG GTG
146840 GCT * 7 19/21 GCT GCT GCT GCT GCT CAT GCT
147259 TCC * 12 33/36 TCC TCC TCC TCC TCC TCC TCC TCT TCC TCC ACG TCC
165062 TTG * 7 19/21 TTG TTG TTG TTG TTG TTG AAG
168409 TGC * 10 27/30 TGC TGC TGC TGC TGC GGC TGT TGC TGC GGC
168448 TGC * 7 19/21 TGC TGT TGC GGC TGC TGC TGC
183016 GGA * 7 20/21 GGA GGA GGA TGA GGA GGA GGA
211220 ACA * 8 23/24 ACA ACA ACA ACA ACT ACA ACA ACA
230663 AGT * 10 28/30 AGT AGT AGT TGT AGT AGT AGT AGT AGT TGT
-----------------------------------------------------------------------------------------
Total sequence length......................... 232744
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGT 1 0 1 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
ACG 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 3 2 1 0 0 0 0 0 0 0 0 0 0
TCC 1 0 1 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 0 1 0 0 0 0 0 0 0 0 0 0
CTG 1 0 1 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 1 ACA + 0 CAA + 0 GTT + 1 TTG + 2 TGT = 5
1 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 1
1 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 1 GGA + 0 GAG + 1 CCT + 0 CTC + 1 TCC = 3
0 AGC + 0 GCA + 1 CAG + 1 GCT + 1 CTG + 3 TGC = 6
1 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 1 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7299861|gb|AE003704.1|AE003704 Drosophila melanogaster genomic scaffold 142000013386035 section 29 of 105, complete sequence
Position Repeat Coverage Repeat
7107 TGC * 7 19/21 TGC TAC TGC TAC TGC TGC TGC
7309 CTG * 7 19/21 CTG CTG CAG CTG TTG CTG CTG
7416 GCT * 7 19/21 GCT GCT GCT GTT GCT GTT GCT
8692 CTG * 8 22/24 CTG CTG CTG CTG TTG ATG CTG CTG
19001 GTT * 7 19/21 GTT GTT GTT GTT GTT GCT GCT
22681 CAT * 7 19/21 CAT CGT CAT CAT CAT CAT CAC
28210 CAG * 7 19/21 CAG CAG CAG CAG AAG CAG CGG
29311 CGT * 8 22/24 CGT TGT CGT CGC CGT CGT CGT CGT
40575 CAG * 10 27/30 CAG CAG CAG CAG TAG CAG CAG CAG CAG TGG
57883 CAG * 7 19/21 CAG CAG CAG CAG CAG CAG GAT
59531 ATA * 10 27/30 ATA ATA ATG ATA ATA ATA ATA ATA AAA ACA
61831 CTG * 8 22/24 CTG CTG CCG CTG ATG CTG CTG CTG
61995 GCT * 7 19/21 GCT GTT GCT GCA GCT GCT GCT
62996 GCT * 7 19/21 GCT GCT GCT GAT GCC GCT GCT
70208 CCT * 8 23/24 CCT CCT CCT CCT CCT CCT CTT CCT
80521 AAT * 7 19/21 AAT AAT AAT AAT AAT AAT GAA
84274 TGC * 7 19/21 TGC TGC CAC TGC TGC TGC TGC
84622 CTG * 8 22/24 CTG CTG CTG CGG CTG CTG ATG CTG
84895 CTG * 14 38/42 CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG TTG ATG ATG ATG
84962 TGC * 8 22/24 TGC TGC TGC TGC TGC TGT TGT TGC
109579 TTG * 7 19/21 TTG TTG CTG TTG CTG TTG TTG
109965 TGC * 10 27/30 TGC TGC TGT TGC TGC TGC TGC TGC TGC TAT
115754 GCA * 13 36/39 GCA GCA GCA GCA GCA GCA GCA GCA GCA CTC GCA GCA GCA
119011 CAA * 17 46/51 CAA CAA CAA CAA CAA AAA CAA CAA CAA CAA CAA CAA CAA CAG CAG AAA CAT
130011 GTT * 7 19/21 GTT GTT GTT GCT GTT GCT GTT
139158 CTG * 7 19/21 CTG CTG TTT CTG CTG CTG CTG
143983 GAT * 8 22/24 GAT GAT GAT GAT TAT GAT GAT GAC
147009 CAT * 8 23/24 CAT CAT CAT CAT CAT CAT CAT CAA
149146 GTG * 7 19/21 GTG GTG ATG ATG GTG GTG GTG
151219 TGC * 14 38/42 TGC TGC TGC TGC TGT TGC TGC TGC TGA TGT TGC TGC TGC TGA
156237 CTG * 8 22/24 CTG TTG CTG CTG CTG CTG CTG CAG
156608 CTG * 7 19/21 CTG CTG CTG TTG CTG TTG CTG
158702 GCA * 10 27/30 GCA GCA GAA GCA GCA GCA GCA GCA TCA GAA
161321 CAG * 11 30/33 CAG CAG CAG CAG CAG CAG CAG CAG CAT CAG GTG
167397 TGC * 8 23/24 TGC TGC TGC TGC TGC TGC TGT TGC
171818 TGC * 10 27/30 TGC TGC TGC TGT TGC TGT TGC TGC TGC AGC
172394 GCT * 15 41/45 GCT GCT GCT GCT GTT GCT GCT GCT GCT GCT GGT GTT GCT GTT GCT
182179 ATC * 7 19/21 ATC ATC ATT ATC GTC ATC ATC
186140 CAA * 10 27/30 CAA CAA CAA CAA CAA CAA CCA CCA CAA AAA
191183 CAG * 21 57/63 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAA CAA CCG CAG CAG CAG CAG CAC ACG
191264 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CAC
206426 GCT * 8 22/24 GCT GCT GCT GGT GCT GCT GCT GCA
208612 GCA * 11 30/33 GCA GCA TCA GCA GCA GCA GCA GCA GCA GAA ACA
-----------------------------------------------------------------------------------------
Total sequence length......................... 220572
Total number of repeats detected.............. 43
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 0 1 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 7 4 2 1 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 2 2 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 3 0 2 1 0 0 0 0 0 0 0 0 0
GCT 5 4 0 1 0 0 0 0 0 0 0 0 0
CAA 2 0 1 0 1 0 0 0 0 0 0 0 0
CAT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 6 3 2 0 0 1 0 0 0 0 0 0 0
CTG 8 7 0 1 0 0 0 0 0 0 0 0 0
CGT 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 2 CAA + 2 GTT + 1 TTG + 0 TGT = 5
0 ATG + 0 TGA + 1 GAT + 2 CAT + 1 ATC + 0 TCA = 4
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 1 CCT + 0 CTC + 0 TCC = 1
0 AGC + 3 GCA + 6 CAG + 5 GCT + 8 CTG + 7 TGC = 29
0 ACG + 0 CGA + 0 GAC + 1 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 1 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7299833|gb|AE003703.1|AE003703 Drosophila melanogaster genomic scaffold 142000013386035 section 28 of 105, complete sequence
Position Repeat Coverage Repeat
26585 CGT * 10 27/30 CGT CGC CGT TGT CGT CGT CGT CGT CGT CGC
45976 GCA * 7 20/21 GCA GCA GCA GCA ACA GCA GCA
46328 GCA * 12 33/36 GCA GCA GCA GCA GCA GCA GCA GCA ACA GCA ACA GCT
46867 CAG * 10 28/30 CAG CTG CAA CAG CAG CAG CAG CAG CAG CAG
46917 GCA * 7 19/21 GCA GCA GCA ACA ACA GCA GCA
58153 GTT * 10 27/30 GTT GTT CTG GTT GTT GTT GTT GTT GTT GTA
78982 GCT * 7 19/21 GCT GCT GCG GCT GCC GCT GCT
127657 AGC * 7 19/21 AGC AGA AGC AGG AGC AGC AGC
142364 TAA * 7 19/21 TAA TAA TAA TAA CAA CAA TAA
160902 CAG * 10 27/30 CAG CAG CAG CAG AAG CAG CAA CAG CAG TAG
160947 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CAA
181937 CTC * 7 20/21 CTC CTC TTC CTC CTC CTC CTC
188552 TGG * 8 22/24 TGG AAG TGG TGG TGG TGG TGG TGG
222084 ACT * 7 19/21 ACT ACT ATT ACT ACT ATT ACT
-----------------------------------------------------------------------------------------
Total sequence length......................... 225419
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACT 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 3 2 1 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 3 1 2 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CGT 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 1 GTT + 0 TTG + 0 TGT = 1
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 1 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 1
1 AGC + 3 GCA + 3 CAG + 1 GCT + 0 CTG + 0 TGC = 8
0 ACG + 0 CGA + 0 GAC + 1 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 1 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7299815|gb|AE003702.1|AE003702 Drosophila melanogaster genomic scaffold 142000013386035 section 27 of 105, complete sequence
Position Repeat Coverage Repeat
4595 CAG * 7 19/21 CAG CAG CAG CAG CAG CAG AAA
17002 ATA * 7 19/21 ATA ATA ATA ATA ATA TAA ATA
33266 CAT * 9 25/27 CAT CAT CAT CAT CAT TAC CAT CAT CAT
49246 TCA * 7 19/21 TCA TCA TCA TCA TTA TCA TTA
58752 TGC * 10 28/30 TGC TGC TGC TGC TGG TGG TGC TGC TGC TGC
58785 TGC * 7 19/21 TGC TGC TGG TGC TGC TGC AGC
59065 CGC * 7 19/21 CGC CGC CGC CTC CGC CGC CGG
64678 TGC * 7 19/21 TGC TGC TGC TGT TGC TGC TGG
94020 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CCG
94320 GCC * 7 19/21 GCC GCC GCC GCT GCT GCC GCC
110230 GTA * 11 30/33 GTA GTA GTA GTA GTA GTA GTA GTA GTA ATG CTA
113294 TGT * 7 20/21 TGT TGT TGT TGT TGT TGT TGC
140823 CTC * 7 19/21 CTC TTC CTG CTC CTC CTC CTC
159585 TAA * 12 33/36 TAA TAA TAG TAA TCA TAA TAA TAA TAA TAA TAA TAG
159772 TTG * 7 19/21 TTG TTT TTG TTG TTG TTG TTT
160261 GTT * 8 22/24 GTT GCT CTT GTT GTT GTT GTT GTT
160285 ATT * 7 19/21 ATT ATT ATT ATT ATT GTT GTT
169232 TGC * 7 19/21 TGC TGC TGC TGC TGT TGC AGC
172845 TGC * 8 22/24 TGC TGT TGC TGC TGC TGC TGC TGT
172882 GCT * 15 41/45 GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GTG GTG
173215 GGA * 11 30/33 GGA GGA GGA GGA CGA GGA GGA TGA GGA GGA GGC
173292 TGC * 7 19/21 TGC TGT TGC TGC TGC TAC TGC
173537 GCT * 8 22/24 GCT GCT GTT GCT GCT GCT GCT GCA
173621 TGC * 7 19/21 TGC TGC TGT TGC TGC TGT TGC
173681 TGC * 7 19/21 TGC TGT TGC TGG TGC TGC TGC
176668 TTG * 7 19/21 TTG TTG TTG TTG TCG TTG CTG
180269 GGA * 7 19/21 GGA GAA GGA GGA GGA GGA GGT
186289 ATT * 7 19/21 ATT ATT ATT ATT ATT ATT AGC
187217 ACA * 8 22/24 ACA GCA ACA ACA ACA ACA ACA GCA
194244 CTT * 8 22/24 CTT CTT CTT CTT CTT TTG CTT CTT
195606 ATT * 7 20/21 ATT ATT ATT ATT ATT ATT AGT
203129 AGC * 7 19/21 AGC TCC AGC AGC AGC AGC AGC
207895 AAT * 7 19/21 AAT AAT AAT AAT AAT AAA AAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 225974
Total number of repeats detected.............. 33
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 3 3 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 0 1 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 8 7 1 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GTA 1 0 1 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 2 1 1 0 0 0 0 0 0 0 0 0 0
GCT 2 1 0 1 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CGC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 1 ATA + 1 TAA + 3 ATT + 0 TTA + 0 TAT = 6
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 1
0 AAC + 1 ACA + 0 CAA + 1 GTT + 2 TTG + 1 TGT = 5
0 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 1 TCA = 2
0 AGT + 1 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 2 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 3
1 AGC + 0 GCA + 2 CAG + 2 GCT + 0 CTG + 8 TGC = 13
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 1 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7299778|gb|AE003701.1|AE003701 Drosophila melanogaster genomic scaffold 142000013386035 section 26 of 105, complete sequence
Position Repeat Coverage Repeat
19080 CTG * 8 22/24 CTG CTG ATG CTG ATG CTG CTG CTG
38031 TGT * 7 19/21 TGT TGT TGT TGT AGC TGT TGT
40762 TGT * 8 22/24 TGT TGT TCT GGT TGT TGT TGT TGT
41288 GTT * 8 22/24 GTT GTT CTT GTT CTT GTT GTT GTT
49039 CAG * 7 19/21 CAG CAG CCG CAG CAA CAG CAG
49435 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAA CCG
49473 GCA * 8 22/24 GCA GCA GCA GCA GCA GCA GCA ACC
49756 CAG * 8 23/24 CAG CAG CAA CAG CAG CAG CAG CAG
58210 CCA * 8 22/24 CCA CCG CCA CCA CCA CCT CCA CCA
71258 ATA * 10 27/30 ATA ATA ATA ATA ATA ATA ATA ATA AAA AAG
72185 TGG * 10 27/30 TGG TGG TGG TGG TGG TGA TGG TGC TGG TGC
90227 CAG * 9 25/27 CAG CAA CAG CAA CAG CAG CAG CAG CAG
95951 CTG * 7 19/21 CTG CTG TTG CTG CTG CTG TTG
112554 CAA * 8 23/24 CAA CAA CAG CAA CAA CAA CAA CAA
114755 ACA * 8 22/24 ACA AAA ACA ACA ACA ACA ACA ACG
120888 TAT * 8 22/24 TAT TTT TAT TAT TAT TAT TAT TTT
130631 GCT * 8 22/24 GCT GCT GCT ACT GCT GCT GCT GCA
139719 GAT * 7 19/21 GAT GAT GAT GAT GAT GAT GCA
145713 CAG * 7 19/21 CAG CAG CAA CAA CAG CAG CAG
145829 GCA * 8 22/24 GCA ACA GCA ACA GCA GCA GCA GCA
145908 CAG * 8 22/24 CAG CAG CAG CAG CTG CAA CAG CAG
146874 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CAA
155302 TGT * 7 19/21 TGT TGC TGT TGT TGT TGC TGT
161162 AAC * 7 19/21 AAC AAG TAC AAC AAC AAC AAC
161187 ACA * 8 22/24 ACA AGA ACA ACA AGA ACA ACA ACA
166381 CAC * 7 19/21 CAC CAG CAC CAC CAC CAC GAC
173818 GAC * 7 19/21 GAC GAC GAC GAT GAC GAC GAT
175132 GAT * 8 22/24 GAT GAT GAT GAT GAC GAC GAT GAT
186632 TGC * 9 25/27 TGC TGC TGC TGC TGC TGC TGC TGC TTG
186683 GCA * 7 19/21 GCA GCA GCA GCG TCA GCA GCA
186815 GCA * 7 19/21 GCA GCA GCA GCA GCA ACA CCA
187210 AGC * 8 22/24 AGC AAC AGG AGC AGC AGC AGC AGC
189747 TGC * 8 22/24 TGC TGC TGT GGC TGC TGC TGC TGC
193144 ATG * 10 27/30 ATG ATG ATG ACG ATG ATG ATG ATG ACG AGG
196507 AAC * 7 19/21 AAC AAC AAC AAC AAC AAG CAC
203703 ATT * 8 23/24 ATT ATT ATT ATT ATT ATT ATT ATA
204773 ATC * 7 20/21 ATC ATC ATC ATC ATC ATC GTC
-----------------------------------------------------------------------------------------
Total sequence length......................... 208418
Total number of repeats detected.............. 37
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 2 2 0 0 0 0 0 0 0 0 0 0 0
ATA 1 0 1 0 0 0 0 0 0 0 0 0 0
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 0 1 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 2 2 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 3 3 0 0 0 0 0 0 0 0 0 0 0
TGG 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
GAT 2 2 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 4 4 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 7 7 0 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 2 2 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 1 ATT + 0 TTA + 1 TAT = 3
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
2 AAC + 2 ACA + 1 CAA + 1 GTT + 0 TTG + 3 TGT = 9
1 ATG + 0 TGA + 2 GAT + 0 CAT + 1 ATC + 0 TCA = 4
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 4 GCA + 7 CAG + 1 GCT + 2 CTG + 2 TGC = 17
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 1 CCA + 1 CAC + 0 GGT + 0 GTG + 1 TGG = 3
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7299755|gb|AE003700.1|AE003700 Drosophila melanogaster genomic scaffold 142000013386035 section 25 of 105, complete sequence
Position Repeat Coverage Repeat
55531 ACA * 7 20/21 ACA ACA ACA ACA AGA ACA ACA
70735 CCT * 8 22/24 CCT CCA CCT CCT CCT CAT CCT CCT
96647 ATT * 7 19/21 ATT ATT ATT ATT ATT ATT TAT
102017 CAG * 7 19/21 CAG CAA CAG CAA CAG CAG CAG
107083 TGC * 7 19/21 TGC TGC TGC CTC TGC TGC TGC
117311 TGC * 9 25/27 TGC TGC TGC TGC TGC TGC TGC TGT TGA
118745 AGC * 18 49/54 AGC AGC AGC AAC AGC AGC AGC AGC AGC AGC AAC AGC AGC ATC AGC AGT TGC AGC
118801 CAG * 7 19/21 CAG CAA CAG CAG CAG CAA CAG
126300 TGC * 8 22/24 TGC TGC TGC CGC TGC TGC TGT TGC
130471 CAG * 7 19/21 CAG CAG CAA CAG GAG CAG CAG
149903 CTG * 8 22/24 CTG CCG CTG CTG CTG CTG CTG CTC
150411 CAG * 8 22/24 CAG CAG CAG CAG CAG TAG CAG CAA
151735 GCC * 8 23/24 GCC GCC GCC GCC GCC GCC GCC GTC
153001 ATC * 7 20/21 ATC ATC ATC GTC ATC ATC ATC
165768 AGC * 8 22/24 AGC AGC AGC AGC AGC AGC TGC AAC
171778 CAG * 7 19/21 CAG CAT CAG CAG CAG CAG CAC
177907 CTG * 8 22/24 CTG CTG CAA CTG CTG CTG CTG CTG
186557 TTG * 8 22/24 TTG TTA TTA TTG TTG TTG TTG TTG
192722 CTG * 7 20/21 CTG CTG CTG CTG CTG CGG CTG
220345 ACA * 7 19/21 ACA ACA ACA ACA GCA GCA ACA
-----------------------------------------------------------------------------------------
Total sequence length......................... 229065
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 1 0 0 1 0 0 0 0 0 0 0 0
ACA 2 2 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 3 3 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 5 5 0 0 0 0 0 0 0 0 0 0 0
CTG 3 3 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 1 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 2 ACA + 0 CAA + 0 GTT + 1 TTG + 0 TGT = 3
0 ATG + 0 TGA + 0 GAT + 0 CAT + 1 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 1 CCT + 0 CTC + 0 TCC = 1
2 AGC + 0 GCA + 5 CAG + 0 GCT + 3 CTG + 3 TGC = 13
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7299726|gb|AE003699.1|AE003699 Drosophila melanogaster genomic scaffold 142000013386035 section 24 of 105, complete sequence
Position Repeat Coverage Repeat
5169 CGC * 8 22/24 CGC CGC CGC CAC CGC CGC CGA CGC
10348 CAG * 7 19/21 CAG GAG CAG CAG CAG GAG CAG
17002 GAT * 7 19/21 GAT GAC GAT GAT GAG GAT GAT
27198 GTT * 7 19/21 GTT GTT GTT ATT GTT GTT GTA
62431 GCT * 7 19/21 GCT GCT GCT GCT GCT GAT CCT
62459 CTG * 7 19/21 CTG TTG TTG CTG CTG CTG CTG
91660 CAG * 10 27/30 CAG CAG CAG CAG CAA CAA CAG CAG CAG CAA
92201 CAG * 7 19/21 CAG CAA CAG CAG CAG CAG CAA
197546 CAC * 7 19/21 CAC CAC CAC CAC AAC CAC GAC
197603 TGG * 8 22/24 TGG TGG TGG TGC TGG TGG CGG TGG
-----------------------------------------------------------------------------------------
Total sequence length......................... 225691
Total number of repeats detected.............. 10
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 3 2 1 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CGC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 1 GTT + 0 TTG + 0 TGT = 1
0 ATG + 0 TGA + 1 GAT + 0 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 3 CAG + 1 GCT + 1 CTG + 0 TGC = 5
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 1 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 1 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7299688|gb|AE003698.1|AE003698 Drosophila melanogaster genomic scaffold 142000013386035 section 23 of 105, complete sequence
Position Repeat Coverage Repeat
24353 TTG * 8 22/24 TTG CTG TTG TTG TTG TTG TTT TTG
28447 CAG * 7 19/21 CAG CAG CAG CAG CAG CAG AAA
83108 GCA * 7 19/21 GCA GCA GCA GAA GCA GCA GCT
83138 GCA * 7 19/21 GCA GCT GCA GCG GCA GCA GCA
84491 AGC * 7 19/21 AGC AAC AGC AGC AGC AGC ATC
85273 AGC * 7 19/21 AGC TGC AGC AGC AGC AGC AGG
85581 CAG * 11 31/33 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG GAT
90637 CCG * 7 19/21 CCG ACG CCG CCG TCG CCG CCG
93462 AAC * 8 22/24 AAC AAC AAC AAC AAC AAC AAA AAA
104023 TCA * 7 19/21 TCA TCA TCA TCA TCA TCG TCT
104286 GAG * 10 27/30 GAG GAG GAG GAG GAG GAG GAG TAG GCG GCG
136384 CTG * 12 34/36 CTG CTG CTG CGG CTG CTG CTG CTG CTG CTT CTG CTG
147913 TGT * 7 19/21 TGT TGT TGT TGT TGT TGC TGC
156094 CAG * 10 27/30 CAG CAT CAG CAT CAG CAG CAG CAG CAG CAT
182608 ACC * 8 22/24 ACC ACC ACC ACC ACC ACC GCC GCC
-----------------------------------------------------------------------------------------
Total sequence length......................... 225299
Total number of repeats detected.............. 15
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 2 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 3 1 2 0 0 0 0 0 0 0 0 0 0
CTG 1 0 1 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 0 CAA + 0 GTT + 1 TTG + 1 TGT = 3
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 1 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 1
2 AGC + 2 GCA + 3 CAG + 0 GCT + 1 CTG + 0 TGC = 8
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
1 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 1 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7299670|gb|AE003697.1|AE003697 Drosophila melanogaster genomic scaffold 142000013386035 section 22 of 105, complete sequence
Position Repeat Coverage Repeat
25407 GTT * 7 19/21 GTT GCT GTT GTT GTT GCT GTT
25742 TTG * 7 19/21 TTG TTG TTG TTG CTG TTG CTG
29938 AAT * 7 19/21 AAT ACA AAT AAT AAT AAT AAT
56159 CTG * 8 23/24 CTG CTG CTG CTG CTG CTG CTG CAG
81131 TTA * 8 22/24 TTA TTA TTA TTA TTA TTA TCA TCA
152371 TGC * 9 25/27 TGC TGC TAC TGC TGC TGC TAC TGC TGC
155208 TGC * 8 22/24 TGC TGC TGC TGC TGC TTC TAC TGC
203724 AGC * 8 22/24 AGC AGC AGC AGC AAC AAC AGC AGC
207961 CAG * 8 22/24 CAG CAG CAG CAG CGG CAG CGG CAG
211629 CTG * 11 30/33 CTG CTG CTG ATG CTG CTG CTG CTT CTG CTT CTG
-----------------------------------------------------------------------------------------
Total sequence length......................... 226860
Total number of repeats detected.............. 10
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 2 1 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 1 GTT + 1 TTG + 0 TGT = 2
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 0 GCA + 1 CAG + 0 GCT + 2 CTG + 2 TGC = 6
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7299628|gb|AE003696.1|AE003696 Drosophila melanogaster genomic scaffold 142000013386035 section 21 of 105, complete sequence
Position Repeat Coverage Repeat
53444 TCC * 7 20/21 TCC TCC TTC TCC TCC TCC TCC
64484 CTC * 7 20/21 CTC CTC CAC CTC CTC CTC CTC
67352 CTG * 10 27/30 CTG CTG CTG CTG CTG CTG CTG CCG CTG CCA
84784 TAA * 8 23/24 TAA TAA TAA TAA TAA TCA TAA TAA
108482 TGG * 7 19/21 TGG TGG TGA TGG TGG TGG TGC
109310 AAT * 7 21/21 AAT AAT AAT AAT AAT AAT AAT
122318 GCT * 7 19/21 GCT GCT ACT GTT GCT GCT GCT
125137 GAC * 7 21/21 GAC GAC GAC GAC GAC GAC GAC
129377 GCT * 8 22/24 GCT GCT TCT GCT GCT GCT GCT TCT
142644 TTG * 12 33/36 TTG TTG TTG TTG TTG TTG TTG TTG CTT TTG CTG TTG
146706 GGA * 8 22/24 GGA GGA GTA GGA GGA GCA GGA GGA
147829 CAA * 7 19/21 CAA CAA CAA CAA CAA CAG CCA
155346 GGC * 7 19/21 GGC GGC GGC GGC GGC GGC GAT
-----------------------------------------------------------------------------------------
Total sequence length......................... 228143
Total number of repeats detected.............. 13
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 0 1 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 0 1 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 1 TAA + 0 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 1 CAA + 0 GTT + 1 TTG + 0 TGT = 2
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 0 GAG + 0 CCT + 1 CTC + 1 TCC = 3
0 AGC + 0 GCA + 0 CAG + 2 GCT + 1 CTG + 0 TGC = 3
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 1 TGG = 1
1 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7299572|gb|AE003695.1|AE003695 Drosophila melanogaster genomic scaffold 142000013386035 section 20 of 105, complete sequence
Position Repeat Coverage Repeat
59765 CAT * 8 22/24 CAT CAC CAT CAG CAT CAT CAT CAT
86523 CAT * 7 19/21 CAT CAT CAA CAT GAT CAT CAT
91331 CCT * 7 20/21 CCT CCT CCG CCT CCT CCT CCT
91382 CGG * 7 20/21 CGG CTG CGG CGG CGG CGG CGG
97393 GCA * 10 27/30 GCA GCG GCG GCA GCA GCA GCA GCA GCA TCA
97765 GCA * 8 22/24 GCA GCA GCA ACA GCA GCA GCA ACA
126925 GAT * 8 22/24 GAT GAT GAT GAT TAT GAT TAT GAT
177123 TTA * 7 19/21 TTA TTA TTT TTA TTA TTA TTT
179624 AGC * 7 19/21 AGC AGC AGT AGC AGT AGC AGC
217024 CAC * 7 19/21 CAC CAA CAC CAC TAC CAC CAC
219430 AGC * 10 28/30 AGC AGC AGC AGC AGC AGC AGC AGC AGG AGA
-----------------------------------------------------------------------------------------
Total sequence length......................... 225655
Total number of repeats detected.............. 11
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGC 2 1 1 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 1 1 0 0 0 0 0 0 0 0 0 0
CAT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CGG 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 1 GAT + 2 CAT + 0 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 1 CCT + 0 CTC + 0 TCC = 1
2 AGC + 2 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 4
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 1 CGG + 0 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7299542|gb|AE003694.1|AE003694 Drosophila melanogaster genomic scaffold 142000013386035 section 19 of 105, complete sequence
Position Repeat Coverage Repeat
18151 CAG * 7 20/21 CAG CAG GAG CAG CAG CAG CAG
63969 TGG * 8 22/24 TGG TGG AGG TGG AGG TGG TGG TGG
66252 GCT * 12 34/36 GCT GCT GCT GCT GCT GCT GCT GCT GCT GCG GCT CCT
66358 GCA * 7 19/21 GCA GCA GTA GCA ACA GCA GCA
101824 CTC * 8 23/24 CTC CTC CTC CTC CTC CTT CTC CTC
109867 CGT * 7 19/21 CGT CGT CGT GGT CGT CGT TGT
129741 GCA * 7 19/21 GCA GCA GCA ACA TCA GCA GCA
129776 AGC * 7 19/21 AGC ATC AGC AGC AGC AGC AAC
147822 GAT * 9 25/27 GAT GAT GAT GAT GAT AAT GAT GAT GAG
166827 GTG * 7 19/21 GTG GTG GTG GTG CTG GTG GTT
167841 GAT * 7 20/21 GAT GAT GAC GAT GAT GAT GAT
218984 AAC * 8 22/24 AAC AAC AAG AAC GAC AAC AAC AAC
-----------------------------------------------------------------------------------------
Total sequence length......................... 226108
Total number of repeats detected.............. 12
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 2 2 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
GCT 1 0 1 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CGT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 0 TGA + 2 GAT + 0 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 1
1 AGC + 2 GCA + 1 CAG + 1 GCT + 0 CTG + 0 TGC = 5
0 ACG + 0 CGA + 0 GAC + 1 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 1 GTG + 1 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7299506|gb|AE003693.1|AE003693 Drosophila melanogaster genomic scaffold 142000013386035 section 18 of 105, complete sequence
Position Repeat Coverage Repeat
2598 TCG * 7 19/21 TCG TAG TCG TCG TCC TCG TCG
12492 GTT * 7 19/21 GTT GTT GTT ATT GTT GTT GCT
59755 TGC * 8 22/24 TGC TGC TGC TGT TGT TGC TGC TGC
62143 CGT * 8 22/24 CGT CGT CGT CGC AGT CGT CGT CGT
117713 GTT * 8 23/24 GTT GTT GTT GTT GTT GTT GAT GTT
124574 TAT * 7 20/21 TAT TAT TAT TTT TAT TAT TAT
196223 TTG * 7 19/21 TTG TTG TTA TTT TTG TTG TTG
199236 GCA * 8 23/24 GCA TCA GCA GCA GCA GCA GCA GCA
201340 GAT * 7 19/21 GAT GAT GAG GAT GAT GAA GAT
-----------------------------------------------------------------------------------------
Total sequence length......................... 226496
Total number of repeats detected.............. 9
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CGT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 2 GTT + 1 TTG + 0 TGT = 3
0 ATG + 0 TGA + 1 GAT + 0 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 1 GCA + 0 CAG + 0 GCT + 0 CTG + 1 TGC = 2
0 ACG + 0 CGA + 0 GAC + 1 CGT + 0 GTC + 1 TCG = 2
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7299460|gb|AE003692.1|AE003692 Drosophila melanogaster genomic scaffold 142000013386035 section 17 of 105, complete sequence
Position Repeat Coverage Repeat
7779 TTG * 8 22/24 TTG TTG TTG TTG TCG TTG TCG TTG
9101 TCT * 10 27/30 TCT TCG TCT TCT TCT TCT TCA TCT TCT TCC
19521 TGC * 7 19/21 TGC TGC TCC TGC TGC TTC TGC
32776 TGC * 11 30/33 TGC TGA TGC TGC TTC TGC TGC TGC TGC TGC TGT
64376 GGT * 8 22/24 GGT GGT GGT GAT GGT GGT GGC GGT
67563 GGT * 7 19/21 GGT GGT GGT GGT GTT GGT AGT
75156 GCT * 8 22/24 GCT GCT GCT GCC GCT GCT GCT TCT
82521 CAG * 7 19/21 CAG CAG CAG CAG TAG CAG TAG
113443 TGC * 7 19/21 TGC TGC TGT TGC TGC TGC TGG
113574 CTG * 9 25/27 CTG CTG CTG CTG CTG TTG TTG CTG CTG
118440 AGC * 7 19/21 AGC AGC AGC AGC GGC AGC AGG
126921 GTT * 7 19/21 GTT GTT GAT GTT GTT GTT ATT
206189 GAC * 8 22/24 GAC GAC GAC GAC GAC GAC GAG GAT
-----------------------------------------------------------------------------------------
Total sequence length......................... 227817
Total number of repeats detected.............. 13
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 3 2 1 0 0 0 0 0 0 0 0 0 0
TCT 1 0 1 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 1 TCT = 1
0 AAC + 0 ACA + 0 CAA + 1 GTT + 1 TTG + 0 TGT = 2
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 0 GCA + 1 CAG + 1 GCT + 1 CTG + 3 TGC = 7
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 2 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7299436|gb|AE003691.1|AE003691 Drosophila melanogaster genomic scaffold 142000013386035 section 16 of 105, complete sequence
Position Repeat Coverage Repeat
2565 CGT * 10 27/30 CGT CGC CGT CGT CGT CAT CGT CGT CGT CGG
17915 GCA * 7 19/21 GCA GCA GCA GCA GCA ACA ACA
27601 ACA * 7 19/21 ACA ACA ACA GCA GCA ACA ACA
28883 TGC * 9 25/27 TGC TGC TGC TGC TGC TGC TCC TGT TGC
29085 GCA * 10 27/30 GCA GCA GCA TCA GCA GCA GCA GCA TCA CCA
35082 GAT * 7 19/21 GAT GCT GAT GCT GAT GAT GAT
57377 AAT * 7 19/21 AAT AAC AAT AAT AAT AAT AAA
61714 AGC * 8 22/24 AGC AGC AGA AGC AGC GGC AGC AGC
71906 TCC * 9 25/27 TCC TCC GCC TCC TCC TCC ACC TCC TCC
75888 CAG * 12 33/36 CAG CAG CAG CAG CAG CAG CAG CAA CAG CAA CAG CAA
75955 ACG * 9 25/27 ACG ACG ACG ACG ACG GCG ACG ACG GCG
77103 GCA * 8 22/24 GCA GCA GCA GCA ACA GCA GCT GCA
78494 AGC * 10 27/30 AGC AGC AGC AGC AAC AGC AGC AAC AGC AAC
78526 CAG * 11 30/33 CAG CAG CAG CAG CAA CAG CAG CAG GAG CAA CAG
79212 GCA * 7 19/21 GCA GCA GCA GCA GCA ACA GAA
79272 GCA * 8 23/24 GCA GCA GCA GCA GCA ACA GCA GCA
79915 CAG * 14 38/42 CAG CAG CAG CAA CAG CAG CAG CAA CAG CAA CAG CAG CAG CAA
80055 ACC * 7 20/21 ACC ACC GCC ACC ACC ACC ACC
80610 AGT * 7 19/21 AGT AGA AGT AGT AGT AGT GGT
92752 ACA * 15 41/45 ACA ACA ACA ACA AGA ACA ACA ACA ACA ACA AGA ACA ACA GCA GCA
94140 AGC * 10 27/30 AGC AGC AGC AGC AGC AGC AGC AGA GGC AGT
94306 GCA * 8 22/24 GCA GCA GCA GCA CCA GTA GCA GCA
142237 TCG * 7 20/21 TCG TCG TAG TCG TCG TCG TCG
145703 CAC * 7 19/21 CAC CAC CAC CAG CAC CAT CAC
161493 CTG * 8 22/24 CTG CTG CTG CTG CCT CTG CTG CTG
161731 GCT * 7 19/21 GCT GCT TCT GCT GCT GCC GCT
166809 GCT * 7 20/21 GCT GCT GTT GCT GCT GCT GCT
177912 AGC * 8 22/24 AGC AGC AGA GGC AGC AGC AGC AGC
202820 AGC * 8 22/24 AGC AGC AGT AGC AGC AGC AAC AGC
210501 TGC * 12 33/36 TGC TGC TGC TTC TGC TGC TTC TGC TGC TCC TGC TGC
215585 CTG * 10 27/30 CTG CTG CGG CTG CTG CTG CTG CTG TTG CTC
215884 TGC * 8 22/24 TGC TAC TGC TGT TGC TGC TGC TGC
215912 TGC * 8 22/24 TGC TGC TGC TGC TGC TTC TGC TGT
219215 CAA * 7 19/21 CAA CAA CAA CAG CTA CAA CAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 226775
Total number of repeats detected.............. 34
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 5 3 2 0 0 0 0 0 0 0 0 0 0
ACA 2 1 0 1 0 0 0 0 0 0 0 0 0
ACG 1 1 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 4 3 1 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 6 5 1 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 3 0 2 1 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 2 1 1 0 0 0 0 0 0 0 0 0 0
CGT 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 2 ACA + 1 CAA + 0 GTT + 0 TTG + 0 TGT = 3
0 ATG + 0 TGA + 1 GAT + 0 CAT + 0 ATC + 0 TCA = 1
1 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 1 TCC = 1
5 AGC + 6 GCA + 3 CAG + 2 GCT + 2 CTG + 4 TGC = 22
1 ACG + 0 CGA + 0 GAC + 1 CGT + 0 GTC + 1 TCG = 3
1 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7299394|gb|AE003690.1|AE003690 Drosophila melanogaster genomic scaffold 142000013386035 section 15 of 105, complete sequence
Position Repeat Coverage Repeat
20696 GCA * 10 29/30 GCA GCA GCA GCA GCA GCA ACA GCA GCA GCA
21576 TAT * 7 19/21 TAT TAT TAT TAT TAT GAT TGT
50121 AGC * 11 30/33 AGC AGC AGC AGC AGC AGC AGC AGC AGC AGG CTC
93641 TAT * 7 19/21 TAT TAT TAT TAT TAT AAT TTT
100986 GAT * 10 27/30 GAT GGT GAT GAT GGT GAT GAT GAT GAT GAG
117665 ACA * 11 30/33 ACA AAA ACA ACA ACG ACA ACA ACA ACA ACA GCA
159131 CCA * 7 20/21 CCA CCA CCA CCG CCA CCA CCA
169780 CTG * 9 25/27 CTG CTG CTG GTG CTG CTG CTG CTG TTG
170140 AGC * 7 19/21 AGC TGC AGC AGC AAC AGC AGC
177938 CAA * 8 24/24 CAA CAA CAA CAA CAA CAA CAA CAA
185602 GAT * 7 19/21 GAT GGT GAT GAT GAT GAT GAC
195892 GCA * 7 19/21 GCA GCT GCA GCA GCG GCA GCA
198811 GCA * 7 19/21 GCA GCA GGA GCA GCA GGA GCA
-----------------------------------------------------------------------------------------
Total sequence length......................... 210299
Total number of repeats detected.............. 13
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGC 2 1 1 0 0 0 0 0 0 0 0 0 0
ACA 1 0 1 0 0 0 0 0 0 0 0 0 0
TAT 2 2 0 0 0 0 0 0 0 0 0 0 0
GAT 2 1 1 0 0 0 0 0 0 0 0 0 0
GCA 3 2 1 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 2 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 1 CAA + 0 GTT + 0 TTG + 0 TGT = 2
0 ATG + 0 TGA + 2 GAT + 0 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
2 AGC + 3 GCA + 0 CAG + 0 GCT + 1 CTG + 0 TGC = 6
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 1 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7299379|gb|AE003689.1|AE003689 Drosophila melanogaster genomic scaffold 142000013386035 section 14 of 105, complete sequence
Position Repeat Coverage Repeat
11393 GAT * 7 19/21 GAT GGT GAT GAT GAT GAT GTT
46660 TTG * 9 25/27 TTG TTG TTG TTG TTG TTG TTG CTT TTG
82057 CTG * 7 19/21 CTG CTT ATG CTG CTG CTG CTG
110429 CAG * 8 22/24 CAG CAG AAG CAG CAG CAG CAG CAT
116723 CTG * 7 19/21 CTG CAG CTG CTG CTG TTG CTG
120527 GTT * 7 19/21 GTT GTT CTT GTT GTT GTT TTT
145745 TTG * 8 22/24 TTG CTG TTG TTG TTG TTG TTG TTC
176760 GCA * 10 28/30 GCA GCA GCA GCA GCA GCA GCA GCA GGG GCA
177255 GCA * 9 26/27 GCA GCA GCA GCA GCA GCA GCA ACA GCA
177331 CAG * 8 22/24 CAG CAG CAA CAG CAG CAG CAG CAA
183471 GGT * 10 27/30 GGT GGT GGT GGT GGT GAT GGT GGT GCT GCT
184947 CAT * 7 19/21 CAT CCT CAT CAT CAT TAT CAT
202570 AGC * 7 20/21 AGC AGC AGT AGC AGC AGC AGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 215984
Total number of repeats detected.............. 13
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 2 1 1 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CTG 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 1 GTT + 2 TTG + 0 TGT = 3
0 ATG + 0 TGA + 1 GAT + 1 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 2 GCA + 2 CAG + 0 GCT + 2 CTG + 0 TGC = 7
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 1 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7299341|gb|AE003688.1|AE003688 Drosophila melanogaster genomic scaffold 142000013386035 section 13 of 105, complete sequence
Position Repeat Coverage Repeat
37912 AAG * 9 25/27 AAG AAG AAG AAG AAG AAG CAG CAG AAG
71588 CAG * 7 19/21 CAG CAG TGG CAG CAG CAG CAG
123305 TCC * 11 31/33 TCC TCC TCC TCT TCC TCG TCC TCC TCC TCC TCC
192357 CAT * 7 19/21 CAT CAT CAT CAT CAT CAT CGG
192380 TCA * 10 27/30 TCA GCA TCA TCA TCA TCA TCA TCA ACA GCA
-----------------------------------------------------------------------------------------
Total sequence length......................... 224795
Total number of repeats detected.............. 5
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 1 0 1 0 0 0 0 0 0 0 0 0 0
TCC 1 0 1 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
1 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 1
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 1 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 1 TCC = 1
0 AGC + 0 GCA + 1 CAG + 0 GCT + 0 CTG + 0 TGC = 1
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7299333|gb|AE003687.1|AE003687 Drosophila melanogaster genomic scaffold 142000013386035 section 12 of 105, complete sequence
Position Repeat Coverage Repeat
4496 GGA * 7 19/21 GGA GGA GGA GGA GGC GGA GGC
15609 TAT * 11 31/33 TAT AGT TAT TAT TAT TAT TAT TAT TAT TAT TAT
46360 ATG * 7 19/21 ATG ATG ATA ATG ATA ATG ATG
88836 AGC * 8 22/24 AGC AAC AGC AGC AGC AGC AAC AGC
89711 TGT * 7 19/21 TGT TGC TGT TGT TGC TGT TGT
101927 TGC * 7 19/21 TGC TGC TGC TTC TGC TGC TGT
107335 CAA * 7 19/21 CAA CAA CAA CAG GAA CAA CAA
110673 AAT * 7 19/21 AAT AAT AAT AAT AAT ATA AAT
117787 GCA * 11 30/33 GCA GCA GCA GCA GCA GCA GCA GCA ACA GCC ACA
119057 CAC * 8 22/24 CAC CAC CAG CAC CAC CAG CAC CAC
125077 TAA * 7 19/21 TAA TAA TAA TAA TAA TAG TTA
126187 TTG * 7 19/21 TTG TTG TTA TTG TTG TTT TTG
137067 GAT * 17 46/51 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAC GAT GAG GAT GAC GAC GAA
141466 AAT * 10 27/30 AAT AAT AAT AAA AAT AAT AAT AAT AAT GTT
161724 CAG * 10 27/30 CAG CAG CAG CAG CAG CAG CAG CAA CAG TTG
165827 GCT * 7 21/21 GCT GCT GCT GCT GCT GCT GCT
177746 CAT * 7 19/21 CAT CAT CAT CAA CAT CGT CAT
187921 CAT * 8 23/24 CAT CAT CAT CAT CAT CAT CAT CAG
188896 TCA * 9 26/27 TCA TCA TCA TCA TCA TCA TCA TCA TCT
194029 CAC * 10 27/30 CAC CAC CAC CAC CAC CAC CAC CAT CGC CCC
202319 GCT * 12 33/36 GCT GCG GCT GCT GCT GCT GCT GCT GCT TCT GCT TCT
202981 TGC * 7 19/21 TGC TGT TGC TGC TGC TGT TGC
203005 TGC * 7 19/21 TGC TGT TGC TGC TGC TGT TGC
213168 GTT * 8 24/24 GTT GTT GTT GTT GTT GTT GTT GTT
216210 CAT * 12 33/36 CAT CGG CAT CAT CAT CAT CAT CAT CAT CAT CAT CAG
217291 AGC * 7 19/21 AGC AGC AGC AGC GAC AGC AGC
228653 GTT * 7 19/21 GTT GTT GTT GTT GAT GTT CTT
229250 AAT * 9 25/27 AAT AAT AAT AAT CAT AAT AAT AAT AAA
248331 CTG * 10 29/30 CTG CTG CTG CTG CTG CTG CTG CTG CTG TTG
-----------------------------------------------------------------------------------------
Total sequence length......................... 260104
Total number of repeats detected.............. 29
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 3 2 1 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 0 1 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 3 3 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 0 0 0 1 0 0 0 0 0 0 0 0
GTT 2 2 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 0 1 0 0 0 0 0 0 0 0 0 0
GCT 2 1 1 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 3 2 1 0 0 0 0 0 0 0 0 0 0
CAG 1 0 1 0 0 0 0 0 0 0 0 0 0
CAC 2 1 1 0 0 0 0 0 0 0 0 0 0
CTG 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
3 AAT + 0 ATA + 1 TAA + 0 ATT + 0 TTA + 1 TAT = 5
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 1 CAA + 2 GTT + 1 TTG + 1 TGT = 5
1 ATG + 0 TGA + 1 GAT + 3 CAT + 0 ATC + 1 TCA = 6
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 1
2 AGC + 1 GCA + 1 CAG + 2 GCT + 1 CTG + 3 TGC = 10
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 2 CAC + 0 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7299308|gb|AE003686.1|AE003686 Drosophila melanogaster genomic scaffold 142000013386035 section 11 of 105, complete sequence
Position Repeat Coverage Repeat
9208 AAT * 7 20/21 AAT AAT AAT AAT AAT AAT ATT
59555 TAT * 7 19/21 TAT TAT GAT TAT TAT TAT GAT
67170 ACT * 8 22/24 ACT ACA ACT ACT ACT ACT ACT ACA
102835 AGC * 7 19/21 AGC AGC ACA AGC AGC AGC AGC
109454 GGT * 7 19/21 GGT GCT GGT GGT GGG GGT GGT
121149 ATC * 7 20/21 ATC GTC ATC ATC ATC ATC ATC
127018 CAG * 7 19/21 CAG CAG CAG CAG TAG CAG CAA
132985 TCA * 7 19/21 TCA TCA TCA TCA TCT TCA TCG
165816 CTC * 8 22/24 CTC CTC ATC CTC TTC CTC CTC CTC
166174 TTA * 7 19/21 TTA TTA TTA TTA TTA TTG TTT
169360 CTT * 7 19/21 CTT CTT CTT CTT CTT CGT TTT
178237 AGA * 7 19/21 AGA AGA AGA AGG GGA AGA AGA
204161 GGT * 10 27/30 GGT GGT GGT GGT GGT GGT GCT GGT GGT GCG
210547 GCA * 7 19/21 GCA GCA GGA GCA GCA GCA GAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 221927
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGA 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACT 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 2 1 1 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 1 TAT = 3
0 AAG + 1 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 2
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 1 ATC + 1 TCA = 2
0 AGT + 0 GTA + 0 TAG + 1 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 1
1 AGC + 1 GCA + 1 CAG + 0 GCT + 0 CTG + 0 TGC = 3
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 2 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7299273|gb|AE003685.1|AE003685 Drosophila melanogaster genomic scaffold 142000013386035 section 10 of 105, complete sequence
Position Repeat Coverage Repeat
9467 CTT * 7 20/21 CTT CTT CTT CTT CTT CTG CTT
18185 TAA * 7 20/21 TAA TAA TAA TCA TAA TAA TAA
20473 CAA * 7 19/21 CAA CAA CAA CAG CAA AAA CAA
21375 TGC * 8 22/24 TGC TGC CGC TGC TGC TGT TGC TGC
24575 GCT * 10 27/30 GCT GTT GCT GCT GCT GCC GCT GCT GCT GCA
24809 CAC * 7 20/21 CAC CAC CAC CAT CAC CAC CAC
25153 GCA * 7 19/21 GCA ACA GCA GCA GCA GCA ACA
27178 GGA * 7 20/21 GGA GGA GGA GGA TGA GGA GGA
30024 AAC * 8 22/24 AAC AAC AAC AAC AAC AAC AGC GAC
38977 TGT * 7 19/21 TGT TGC TGT TGC TGT TGT TGT
50677 GCA * 12 34/36 GCA GCA GCG GCA GCA GCA ACA GCA GCA GCA GCA GCA
50799 CAG * 10 27/30 CAG CAG CAG CAG CAA CTG CAG CAG CAG CAA
52098 ATT * 12 34/36 ATT ATT ATT ATT ATA ATT ATT ATT ATT ACT ATT ATT
53947 AAC * 10 27/30 AAC AAC AAC AAC AAC AAC AAC AAG AAC GAT
84569 CCG * 7 19/21 CCG CCG CCT CCG CGG CCG CCG
84608 GCT * 7 19/21 GCT GCT GTT GTT GCT GCT GCT
92352 CAA * 8 22/24 CAA CAG CAA CAA CAA CAA CAA AAA
135595 CCT * 7 19/21 CCT CCT CCA CCT CCT CCG CCT
170830 TGT * 7 19/21 TGT TGT TGT TGT TGT CGT CGT
171839 GTG * 10 27/30 GTG GTA GTG GTA GTG GTG GTG GTG GTG GCG
172179 CTG * 7 19/21 CTG CTG CTG ATG CTG ATG CTG
202411 GGA * 7 19/21 GGA GGA GGA AGA GGA GGA TGA
-----------------------------------------------------------------------------------------
Total sequence length......................... 224882
Total number of repeats detected.............. 22
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 2 1 1 0 0 0 0 0 0 0 0 0 0
ATT 1 0 1 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 0 1 0 0 0 0 0 0 0 0 0 0
GGA 2 2 0 0 0 0 0 0 0 0 0 0 0
GCA 2 1