Tri-Nucleotide Repeats in Genomic Sequences Tri-Nucleotide Repeats in
Drosophila melanogaster Chromosome-Arm-3R Genomic Scaffolds


Genomic sequence
gi|7316099|gb|AE002681.1|AE002681 Drosophila melanogaster genomic scaffold 142000013386043, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       0 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7296880|gb|AE003607.1|AE003607 Drosophila melanogaster genomic scaffold 142000013386043 section 8 of 8, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    11105  GAA *  8    22/24     GAA GGA GAA GAA GAA GAA GAA GGA
    13626  CTG * 10    27/30     CTG CTG CTG CTG CAC CTG CTG CTG CTG GTG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       95401 
 Total number of repeats detected..............       2 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  GAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       0       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   1 GAA +   0 CTT +   0 TTC +    0 TCT      =    1 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    0 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    0 GCA +   0 CAG +   0 GCT +   1 CTG +    0 TGC      =    1 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7296839|gb|AE003606.1|AE003606 Drosophila melanogaster genomic scaffold 142000013386043 section 7 of 8, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     5354  TAA *  7    19/21     TAA TTC TAA TAA TAA TAA TAA
    26494  GTT * 11    30/33     GTT GTT GTA GTT GTT GTT GTT GTA GTT GGT GTT
    26554  GTT *  7    19/21     GTT GTT GTA GTT GGT GTT GTT
    26613  TGT * 11    30/33     TGT TGT TGT TGT TGT AGT TGT TGT AGT TGG TGT
    26668  GTT *  8    22/24     GTT GTT GTA GTT TTT GTT GTT GTT
    26700  TGT *  7    19/21     TGT TGT AGT TGC TGT TGT TGT
    26757  TGT *  8    22/24     TGT TGT TGT AGT TGG TGT TGT TGT
    30831  AGC * 10    28/30     AGC GAC AGC AGC AGC AGC AGC AGC AGC AGC
   128238  TGC *  8    22/24     TGC TGC TGC TGC TGC TGC TGT TGT
   129652  GCT *  7    19/21     GCT GCT ACT GCT ACT GCT GCT
   131081  TGC *  8    22/24     TGC TGC TGC TGT TGC TGT TGC TGC
   140114  TGC *  7    19/21     TGC TGT TGC TGC TAC TGC TGC
   194518  AGC *  7    19/21     AGC AGC AAC AAC AGC AGC AGC
   194574  CAG *  7    19/21     CAG CAG CAA CAG CAG CAG CAA
   269226  GTT *  8    22/24     GTT GAT GTT GTT GTT GAT GTT GTT
   280407  TAG *  7    19/21     TAG TAG TAG TAG AAG AAG TAG
   292532  TAT *  7    19/21     TAT TAT TAT TAT TAT TAT ATT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       300275 
 Total number of repeats detected..............       17 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AGC      2       1       1       0       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      3       2       1       0       0       0       0       0       0       0       0       0       0   
  TGC      3       3       0       0       0       0       0       0       0       0       0       0       0   
  GTT      4       3       1       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   1 TAA +   0 ATT +   0 TTA +    1 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   4 GTT +   0 TTG +    3 TGT      =    7 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   1 TAG +   0 ACT +   0 CTA +    0 TAC      =    1 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   2 AGC +    0 GCA +   1 CAG +   1 GCT +   0 CTG +    3 TGC      =    7 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7296808|gb|AE003605.1|AE003605 Drosophila melanogaster genomic scaffold 142000013386043 section 6 of 8, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     6689  GTT *  7    19/21     GTT GTC GTC GTT GTT GTT GTT
    42296  GAC *  7    19/21     GAC GAC GAG GAC GAC GAC GAA
    43703  ATG *  8    22/24     ATG TTG TTG ATG ATG ATG ATG ATG
    43853  CAA *  7    19/21     CAA CAG CAA CAA CAA AAA CAA
    44795  CAG * 10    27/30     CAG CAG CGG CAG CAG CAG CAG CAG CGG CGG
    45208  CAG * 10    27/30     CAG CAG CAG CAG CAC CAT CAG CAG CAG CAA
    45354  GCA *  9    25/27     GCA ACA GCA GCA GCA GCA ACA GCA GCA
    45397  CAG *  8    22/24     CAG CAT CAG CAG CAG CAG CAT CAG
    45424  CAG * 14    39/42     CAG CAG CAG CAG CAT CAG CAG CAG CAG CAT CAG CAA CAG CAG
    48756  AAT *  7    20/21     AAT AAC AAT AAT AAT AAT AAT
   116238  GAA *  7    19/21     GAA GAA GAA GAA GCA GAA GTA
   128312  TGT *  7    19/21     TGT GGC TGT TGT TGT TGT TGT
   166150  CAT *  7    20/21     CAT CAT CAT CAT CAC CAT CAT
   175273  CTC * 10    27/30     CTC CTC CTC CTC CTC CTC CTC CCC CTC CCT
   176205  TGC *  7    19/21     TGC TGC TGC TGC TGC GTC TGC
   185514  ATA * 27    73/81     ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ACA TGT GAT AAA
   220772  CTG *  7    19/21     CTG CTG CTG TTG CTG TTG CTG
   255416  TAA * 11    30/33     TAA TAA TCA TAA TAA TAA TAA TTA TAA TTA TAA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       274591 
 Total number of repeats detected..............       18 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATA      1       0       0       0       0       0       0       1       0       0       0       0       0   
  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      4       1       2       1       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTC      1       0       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    1 ATA +   1 TAA +   0 ATT +   0 TTA +    0 TAT      =    3 
   0 AAG +    0 AGA +   1 GAA +   0 CTT +   0 TTC +    0 TCT      =    1 
   0 AAC +    0 ACA +   1 CAA +   1 GTT +   0 TTG +    1 TGT      =    3 
   1 ATG +    0 TGA +   0 GAT +   1 CAT +   0 ATC +    0 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   1 CTC +    0 TCC      =    1 
   0 AGC +    1 GCA +   4 CAG +   0 GCT +   1 CTG +    1 TGC      =    7 
   0 ACG +    0 CGA +   1 GAC +   0 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7296793|gb|AE003604.1|AE003604 Drosophila melanogaster genomic scaffold 142000013386043 section 5 of 8, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    32647  GAC *  7    19/21     GAC GAC GAC AAC GAC GAT GAC
    59660  GCA * 11    31/33     GCA GCA GCA ACA GCA GCA GCA ACA GCA GCA GCA
    59780  GCA *  8    22/24     GCA ACA GCA GCA GCA GCA GCA ACA
    59912  ACA * 11    30/33     ACA ACA ACA ACA ACA GCA ACA ACA GCA GCA ACA
    59945  GCA *  7    19/21     GCA GCA GCA GCA GCA GCA GAC
    60312  CAG *  7    19/21     CAG CAG CAG CAA CAA CAG CAG
    60438  CAG * 13    36/39     CAG CAC CAG CAG CAG CAA CAG CAG CAG CAG CAG CAG CAA
    60785  GCA *  8    22/24     GCA GCA GCA GCA GCC ACA GCA GCA
    61122  GCC *  7    19/21     GCC GCC GCC GCT GCC GCC GGC
    61732  AAC *  7    19/21     AAC TGC AAC AAC AAC AAC AAC
    69567  TAT * 13    36/39     TAT TAT TAT TAT TAT TAT TAT TAT TAT TAC GAG TAT TAT
    84598  GTT *  7    19/21     GTT GTC GTT GTC GTT GTT GTT
   123177  TTG *  7    19/21     TTG CTG TTG TTG CTG TTG TTG
   127283  CAA *  7    19/21     CAA CAA CAA CAA CAA AAA CTA
   173990  ATT *  7    20/21     ATT TTT ATT ATT ATT ATT ATT
   201898  TGC *  7    19/21     TGC TGC TGT TGC TGC AGC TGC
   217834  TCC *  7    20/21     TCC TCC TCC TCC TCC TCC CCC
   275577  GGT *  7    20/21     GGT GGT GGT GGT GGT GAT GGT
   275765  TGG *  8    22/24     TGG TGG TGA TGG GGG TGG TGG TGG
   275911  CTG *  8    22/24     CTG CTG CTG GTG CTG CTG CTG TTG
   275936  TGC *  8    22/24     TGC TGC TGC TGG TGC TGG TGC TGC
   291426  CTG *  7    19/21     CTG TTG CTG TTG CTG CTG CTG
   291487  TGC *  7    20/21     TGC TGC TGC TGT TGC TGC TGC
   301657  CTG *  7    19/21     CTG CTC CTG CTC CTG CTG CTG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       302700 
 Total number of repeats detected..............       24 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TAT      1       0       0       1       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      3       3       0       0       0       0       0       0       0       0       0       0       0   
  TCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      4       3       1       0       0       0       0       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      2       1       0       1       0       0       0       0       0       0       0       0       0   
  CTG      3       3       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   1 ATT +   0 TTA +    1 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    1 ACA +   1 CAA +   1 GTT +   1 TTG +    0 TGT      =    5 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    1 TCC      =    1 
   0 AGC +    4 GCA +   2 CAG +   0 GCT +   3 CTG +    3 TGC      =   12 
   0 ACG +    0 CGA +   1 GAC +   0 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   1 GGT +   0 GTG +    1 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   1 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7296751|gb|AE003603.1|AE003603 Drosophila melanogaster genomic scaffold 142000013386043 section 4 of 8, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     3223  GCT *  7    19/21     GCT CCT GCG GCT GCT GCT GCT
    16925  AGT *  7    19/21     AGT ACT AGT AGT ACT AGT AGT
    23788  TGC *  9    26/27     TGC TGT TGC TGC TGC TGC TGC TGC TGC
    34544  CAA *  9    25/27     CAA CAA CAA CAA CAA CAA CAA CAA GAG
    85210  TTG *  7    19/21     TTG CTG TTG TTG TTG CTG TTG
   105941  CAC * 13    36/39     CAC TAC CAA CAC CAC CAC CAC CAC CAC CAC CAC CAC CAA
   125353  TCA *  8    23/24     TCA TCA CCA TCA TCA TCA TCA TCA
   128437  TAT * 12    33/36     TAT TAT TAT TAT TAT TAT AAT TAT TAT TTT TAT TTT
   145826  GCT *  7    19/21     GCT GCT GCT GCA GCT GCC GCT
   148281  TTC *  7    19/21     TTC TTG TTT TTC TTC TTC TTC
   153162  TGC * 10    29/30     TGC TGC TGC TGC TGC TGC TGC TGC TGC GGC
   182740  CTG *  7    19/21     CTG CTG CCG CTG CTG CTG CTT
   241017  AAT *  7    19/21     AAT AAA AAT AAC AAT AAT AAT
   242547  TAG *  7    19/21     TAG AAA TAG TAG TAG TAG TAG
   262684  TGA *  7    19/21     TGA TGA CGT TGA TGA TGA TGA
   264431  CAG *  8    22/24     CAG CAG CAG CAG CAG CAG CAA CAT
   264523  GCA *  7    19/21     GCA GCA GCA GCT GCA GCA ACA
   264790  GCA *  9    25/27     GCA ACA GCA GCA GCA GCA GCA ACA GCA
   264974  CAG *  8    22/24     CAG CAA CAG CAA CAG CAG CAG CAG
   290380  AAT *  8    23/24     AAT AAT AAT AAT AAT AAT AAT AAA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       294507 
 Total number of repeats detected..............       20 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  AGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       1       1       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAC      1       0       0       1       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   2 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    1 TAT      =    3 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   1 TTC +    0 TCT      =    1 
   0 AAC +    0 ACA +   1 CAA +   0 GTT +   1 TTG +    0 TGT      =    2 
   0 ATG +    1 TGA +   0 GAT +   0 CAT +   0 ATC +    1 TCA      =    2 
   1 AGT +    0 GTA +   1 TAG +   0 ACT +   0 CTA +    0 TAC      =    2 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    2 GCA +   2 CAG +   2 GCT +   1 CTG +    2 TGC      =    9 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   1 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7296683|gb|AE003602.1|AE003602 Drosophila melanogaster genomic scaffold 142000013386043 section 3 of 8, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    14987  TGA *  8    22/24     TGA TGA TGA TGA TGA TTA CGA TGA
    21925  GCA *  8    22/24     GCA GCA GCA ACA GCA GCA GCA GCT
    22000  GCA * 10    28/30     GCA GCA GCA ACA GCA GCA GCA GCA GGA GCA
    22267  GCA *  7    20/21     GCA GCA GCA GCA GCA GCA ACA
    24272  CAG * 11    31/33     CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CCC
    24820  GCG *  7    19/21     GCG GCG GCG GCA GCG GCG GCA
    30695  CTC *  8    22/24     CTC CTG CTC CTC CTC GTC CTC CTC
    44135  GTT *  8    22/24     GTT GTT TTT GTT GTT GTT GTT GAT
    52048  AGG *  7    19/21     AGG AGG AGG AGC AGG AGG CGG
    68496  TGC *  7    19/21     TGC TAC TGC TGC TGC TGC TGT
    68520  TGT *  7    19/21     TGT TGT TGT TGT TGT TGT TAG
    80992  AAG *  7    19/21     AAG AAG AAG AAG AAG AAG GAC
    81249  GAA *  7    19/21     GAA GAA AAA GAA GCA GAA GAA
    99014  CAC *  7    19/21     CAC CAC CAC CAC AAC CCC CAC
   111159  TAA *  8    22/24     TAA TAA TAA TAA TAA TAA TAA AAT
   128073  GCA * 10    27/30     GCA GCA GCA GCA ACA ACA GCA GCA GCA GCC
   227172  TAC *  7    20/21     TAC TAC TAC TAC TAC TAT TAC
   243612  CCT *  7    19/21     CCT CCT GCT CCT GCT CCT CCT
   292969  TCC *  7    19/21     TCC TCC TCC TCA TCC TCA TCC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       297266 
 Total number of repeats detected..............       19 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      4       2       2       0       0       0       0       0       0       0       0       0       0   
  GCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   1 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   1 AAG +    0 AGA +   1 GAA +   0 CTT +   0 TTC +    0 TCT      =    2 
   0 AAC +    0 ACA +   0 CAA +   1 GTT +   0 TTG +    1 TGT      =    2 
   0 ATG +    1 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    1 TAC      =    1 
   1 AGG +    0 GGA +   0 GAG +   1 CCT +   1 CTC +    1 TCC      =    4 
   0 AGC +    4 GCA +   1 CAG +   0 GCT +   0 CTG +    1 TGC      =    6 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   1 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    1 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7296642|gb|AE003601.1|AE003601 Drosophila melanogaster genomic scaffold 142000013386043 section 2 of 8, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     7384  GGT * 11    30/33     GGT GGA GGT GGT GGT GGA GGT GGT GGT GGA GGT
    40607  CGG *  8    22/24     CGG AGG AGG CGG CGG CGG CGG CGG
    52257  TTA *  7    19/21     TTA TGA TTA TTA TTA TTA TTG
    63928  TGC *  8    22/24     TGC TGC TGC TGC TGC GGC TGG TGC
   124463  CAG *  8    23/24     CAG CAG CAG CAG CAG CAA CAG CAG
   164072  GCA *  8    22/24     GCA GCA GCA GCA GCA GTT GCA GCA
   164217  CAG *  7    19/21     CAG CAG CAC CAA CAG CAG CAG
   164326  GCA *  7    19/21     GCA GTA GCA GCA GCA GCA GGA
   164350  GCA *  7    19/21     GCA GAA GCA GCA GCA GCA ACA
   168633  TGT * 10    27/30     TGT TGT TGT TGT TTT TGT TGT TTT TGT TGC
   175603  GGA *  7    19/21     GGA GGA GGA GGC GGA GGA GGT
   234259  TAT *  8    23/24     TAT TAT TAC TAT TAT TAT TAT TAT
   239415  CTG *  8    22/24     CTG CTG CTG CTG CTG ATG GTG CTG
   287124  TAT *  7    19/21     TAT TAT TAT TGT TGT TAT TAT
   301106  AGC *  7    19/21     AGC AGC AGG ATC AGC AGC AGC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       303626 
 Total number of repeats detected..............       15 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GCA      3       3       0       0       0       0       0       0       0       0       0       0       0   
  CAG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   1 TTA +    2 TAT      =    3 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    1 TGT      =    1 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    1 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   1 AGC +    3 GCA +   2 CAG +   0 GCT +   1 CTG +    1 TGC      =    8 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   1 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   1 CGG +   0 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7296607|gb|AE003600.1|AE003600 Drosophila melanogaster genomic scaffold 142000013386043 section 1 of 8, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     5043  ATT *  8    22/24     ATT ATT ATT ATT ATT ATT AAA ATT
    13155  TGC *  7    19/21     TGC TGC TGC TGC GTC TGC TGC
    20187  TTA *  8    23/24     TTA TTA TTA TTA TTA TTA TTT TTA
    25616  TGT *  7    19/21     TGT TGT GGT TGT TGT AGT TGT
    25922  TGT *  7    19/21     TGT TGT GGT TGT TGT AGT TGT
    44848  CTG *  7    19/21     CTG CGG CTG CTG CTG CTG CTC
    48997  GGT *  7    19/21     GGT GGT GGT GGT GGC GGT GGC
    67216  CTT *  7    19/21     CTT CTT CTT TTT CTT TTT CTT
    72646  CTT *  7    20/21     CTT CTT CTT CTC CTT CTT CTT
    91415  AAT * 86   232/258    AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT ATT AAT AAT ATT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT GAT AAT AAT AAT AAT AGT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAG AAT AAT AAT AAT AAT AAT AAA ATA AGT TTA AAG AGT AGT GCA TTT AAT TTT CAC CAG
   103688  ATC *  7    19/21     ATC GTC ATT ATC ATC ATC ATC
   108769  TAT *  7    19/21     TAT TAT TAT TAT TAT CGT TAT
   139273  ATT *  8    22/24     ATT ATT ATT ATT ATT ATT ATT AAG
   193636  AGC * 14    38/42     AGC AAC AGC AGC AGC AGC AGC AGC AGC AAA AGC AGC AGC GGC
   199946  CTG *  8    22/24     CTG CTA CTC CTG CTG CTG CTG CTG
   214180  TAT * 10    28/30     TAT ATT TAT TAT TAT TAT TAT TAT TAT TAT
   226893  CCA *  8    22/24     CCA GCA CCA CCA CCA CCA TCA CCA
   276829  AAG *  8    22/24     AAG AAA AAG AAG AAA AAG AAG AAG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       291545 
 Total number of repeats detected..............       18 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       0       0       0       0       0       0       0       0       0       0       0       1   
  AAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  ATC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       0       0       1       0       0       0       0       0       0       0       0       0   
  TAT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   2 ATT +   1 TTA +    2 TAT      =    6 
   1 AAG +    0 AGA +   0 GAA +   2 CTT +   0 TTC +    0 TCT      =    3 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    2 TGT      =    2 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   1 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   1 AGC +    0 GCA +   0 CAG +   0 GCT +   2 CTG +    1 TGC      =    4 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    1 CCA +   0 CAC +   1 GGT +   0 GTG +    0 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7316097|gb|AE002699.1|AE002699 Drosophila melanogaster genomic scaffold 142000013386040, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       0 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7298913|gb|AE003675.1|AE003675 Drosophila melanogaster genomic scaffold 142000013386040 section 5 of 5, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    33433  TGC *  7    19/21     TGC TGC TGC TGT TGG TGC TGC
    37990  TGG * 12    33/36     TGG GGA TGG TGG TGG TGG TGG TGG TGG TGG TGT TGG
    38026  TGC *  7    19/21     TGC TGC TGC TGC TGC TGT TGT
    40058  CCG *  8    22/24     CCG CCG CCG CCG CTG CCG CCT CCG
    53720  TAA *  7    19/21     TAA CAA TAA TAA TAA TAA TGA
    88729  GGT * 13    36/39     GGT GGC GGT GGT GGT GGT GGC GGT GGT GGT GGT GGT GGA
   120713  TTG *  7    19/21     TTG TGG TTG GTG TTG TTG TTG
   120737  TTG *  8    22/24     TTG TTG TTG TTG TTC TTG TTG TTT
   141793  ATG *  7    19/21     ATG GCG ATG ATG ATG ATG ATG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       145786 
 Total number of repeats detected..............       9 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GGT      1       0       0       1       0       0       0       0       0       0       0       0       0   
  CCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   1 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   2 TTG +    0 TGT      =    2 
   1 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    0 GCA +   0 CAG +   0 GCT +   0 CTG +    2 TGC      =    2 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   1 GGT +   0 GTG +    1 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   1 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7298877|gb|AE003674.1|AE003674 Drosophila melanogaster genomic scaffold 142000013386040 section 4 of 5, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     8389  ATT *  8    22/24     ATT ATT TTT AAT ATT ATT ATT ATT
    50175  CAT *  8    22/24     CAT CAT CAT CAT CAT CAT CAT CGA
    68174  CAG *  8    22/24     CAG CAG CAG CTG CCG CAG CAG CAG
    68429  CAG *  7    19/21     CAG CAC CAC CAG CAG CAG CAG
    85460  GCT *  8    22/24     GCT GCT GCT GCT GCT GCT GTT GGT
   100035  GCA *  8    22/24     GCA GCT GCA GCA GCA GCA ACA GCA
   100185  GCA *  8    22/24     GCA GCA GCA CCA GCA ACA GCA GCA
   100828  CAG *  7    19/21     CAG CAG CAA CAG CAG CAG CCG
   114141  ATC *  7    19/21     ATC GTC GTC ATC ATC ATC ATC
   116022  AGC *  7    19/21     AGC CGC CGC AGC AGC AGC AGC
   141631  CTG *  8    22/24     CTG CTG CTG CTG CCA CTG CTG CTG
   168657  GCA *  7    19/21     GCA GCC GCA GCA GCA GCA ACA
   168681  GCA *  7    19/21     GCA GCT GCA GCT GCA GCA GCA
   199052  TCG *  7    19/21     TCG TCG CCG TCG ACG TCG TCG
   218890  GAA *  7    19/21     GAA GAA GAA GAG GGA GAA GAA
   254164  GCA *  7    21/21     GCA GCA GCA GCA GCA GCA GCA
   271419  GGA *  9    25/27     GGA GGA GGA GGA GTA GGA GGA GGA GGC
   276355  AGC *  7    19/21     AGC AGC AGC AGT AGC AGC AAC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       298028 
 Total number of repeats detected..............       18 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      5       5       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      3       3       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   1 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   1 GAA +   0 CTT +   0 TTC +    0 TCT      =    1 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    0 
   0 ATG +    0 TGA +   0 GAT +   1 CAT +   1 ATC +    0 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    1 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   2 AGC +    5 GCA +   3 CAG +   1 GCT +   1 CTG +    0 TGC      =   12 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    1 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7298860|gb|AE003673.1|AE003673 Drosophila melanogaster genomic scaffold 142000013386040 section 3 of 5, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    35332  TGC *  7    20/21     TGC TGC TGC TGC TGC TGC TGT
    79140  TGG *  8    23/24     TGG TGG TGG TGG TGA TGG TGG TGG
    81025  TAT * 12    33/36     TAT TAT TAT TAT TAT TAT TAT TTT TAT TAT TAT ATT
   107929  GCT *  7    19/21     GCT GCT GCT GAT GCT GCT GCA
   129652  TAT *  7    19/21     TAT TAT TAT TAT TAT TAT TTG
   157499  TTG *  7    19/21     TTG TTG CTG TTC TTG TTG TTG
   159991  GCT *  7    19/21     GCT GCT GCA GTT GCT GCT GCT
   177546  CAG *  9    25/27     CAG CAG CAA CAG CAG CAG CAG CAA CAG
   245314  GCA * 11    30/33     GCA GCA GCA GCA GCA ACA GCA ACA GCA GCA ACA
   245410  GCA *  8    22/24     GCA ACA GCA GCA ACA GCA GCA GCA
   245530  CAA *  7    19/21     CAA CAG CAA CAA CAA CAA CAG
   245675  GCC *  7    19/21     GCC GCC GCT GCC GCC GCC GGC
   261812  CGG *  7    19/21     CGG CGG CGG CGG CAT CGG CGG
   262038  GCA *  8    22/24     GCA GCA GCA TCA GCA GCA GCA GGA
   285729  GTT * 11    30/33     GTT GCT GTT GTT GTT GTT GTT GTT ATT ATT GTT
   286196  CTG *  7    19/21     CTG CTG CGT CTG CTG CTG CTG
   308255  GAG *  7    19/21     GAG GAG GAG GAG AAG GAA GAG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       309357 
 Total number of repeats detected..............       17 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  TAT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GCA      3       2       1       0       0       0       0       0       0       0       0       0       0   
  GCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    2 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   1 CAA +   1 GTT +   1 TTG +    0 TGT      =    3 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   1 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   0 AGC +    3 GCA +   1 CAG +   2 GCT +   1 CTG +    1 TGC      =    8 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    1 TGG      =    1 
   0 GGC +    0 GCG +   1 CGG +   1 GCC +   0 CCG +    0 CGC      =    2 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7298812|gb|AE003672.1|AE003672 Drosophila melanogaster genomic scaffold 142000013386040 section 2 of 5, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    48768  ATA *  7    21/21     ATA ATA ATA ATA ATA ATA ATA
    79262  CGC *  7    19/21     CGC CGC CGC CGC CGC TGC AGC
    86480  GCC * 10    28/30     GCC GCC GCT GCC GCC GCC GCC GCC GCT GCC
   104920  GCT *  8    22/24     GCT GCT GCT GCT GCG GCC GCT GCT
   110628  GCA * 18    49/54     GCA GCA GCA GCA GCA ACA GCA GCA GCA GCA GCA TCA CCA GCA GCA GCA ACA CCA
   112487  GCA *  8    22/24     GCA CCA GCA GCA GCA GCA GCA ACA
   112515  CAG * 18    49/54     CAG CAG CAG CAG CAG CAG CAG CAG CAG CAA CAG CAG CAG CAG CAG GCG CAC CAC
   112614  CAG *  7    19/21     CAG CAG CAG CAG CAG CAA CAA
   154286  TTG *  7    19/21     TTG TTG CTG TTG TTG TTT TTG
   191994  GCT *  7    19/21     GCT GCT GCT GTT GCT GCT GGT
   192032  TGC * 10    27/30     TGC TGC TGG TGC TGC TGG TGC TGC TGC TGT
   193420  TGC *  7    19/21     TGC AGC TGC TGT TGC TGC TGC
   207522  CTG *  8    22/24     CTG GTG CTG CTG CTG CTC CTG CTG
   207549  CTG *  8    22/24     CTG CTG CTG ATG CTG CTG CTG TTG
   212743  CCT *  7    19/21     CCT CCT CCT CCT CAT CCT TCT
   214401  TCA *  7    19/21     TCA TCA TTA TCA TCA TCA CCA
   247988  CCT *  7    19/21     CCT CCT CCT TCT CCT GCT CCT
   264979  TTA *  7    19/21     TTA TTA TTA TTA TTA TAA TAA
   288129  CAG *  7    19/21     CAG CAA CAA CAG CAG CAG CAG
   290552  ACA *  8    22/24     ACA ACA ACA ACC TCA ACA ACA ACA
   291160  GCA *  7    20/21     GCA GCA GCA GCA GCA GCA TCA
   291205  GCA *  9    25/27     GCA GCA ACA GCA GCA GCA GCA GCA ACA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       301601 
 Total number of repeats detected..............       22 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       1       1       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      4       3       0       0       1       0       0       0       0       0       0       0       0   
  GCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CAG      3       2       0       0       1       0       0       0       0       0       0       0       0   
  CTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    1 ATA +   0 TAA +   0 ATT +   1 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    1 ACA +   0 CAA +   0 GTT +   1 TTG +    0 TGT      =    2 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    1 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   2 CCT +   0 CTC +    0 TCC      =    2 
   0 AGC +    4 GCA +   3 CAG +   2 GCT +   2 CTG +    2 TGC      =   13 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   1 GCC +   0 CCG +    1 CGC      =    2 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7298787|gb|AE003671.1|AE003671 Drosophila melanogaster genomic scaffold 142000013386040 section 1 of 5, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    84603  GCT *  7    20/21     GCT GCT GCT GCT GCT TCT GCT
   115779  CTG * 10    27/30     CTG CTG CTG CTG CTG CTG CTG CCG CCG CCG
   123434  CAG * 12    33/36     CAG CAG CAG CAG CAA CAG CAA CAG CAG CAG CAG CAA
   123614  CAG *  7    19/21     CAG CAA CAG CAT CAG CAG CAG
   123641  CAG * 11    30/33     CAG CAG CAG CAG CAG CAG CAA CAG CAG CAA CAT
   248139  CTG *  7    19/21     CTG CTG CTG CTC CTG CTG ATG
   255681  GTC *  8    22/24     GTC GTT GTC GTC GTC GTT GTC GTC
   265181  ACC *  7    20/21     ACC ACG ACC ACC ACC ACC ACC
   272164  CAG *  9    25/27     CAG CAA CAG CAG CAG CAG CAG CAA CAG
   280346  GCT * 10    27/30     GCT GCT GCT GTT GCT GCT GCT GCT GCT GGC
   292060  TTA *  8    24/24     TTA TTA TTA TTA TTA TTA TTA TTA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       309023 
 Total number of repeats detected..............       11 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ACC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CAG      4       2       2       0       0       0       0       0       0       0       0       0       0   
  CTG      2       1       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   1 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    0 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    0 GCA +   4 CAG +   2 GCT +   2 CTG +    0 TGC      =    8 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   1 GTC +    0 TCG      =    1 
   1 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7316093|gb|AE002708.1|AE002708 Drosophila melanogaster genomic scaffold 142000013386035, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       0 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7302106|gb|AE003780.1|AE003780 Drosophila melanogaster genomic scaffold 142000013386035 section 105 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    24513  AAT *  7    19/21     AAT AAT AAT TAT TAT AAT AAT
    37058  CAG *  7    19/21     CAG AAG TAG CAG CAG CAG CAG
   109281  ACA *  7    19/21     ACA AAA ACA ACG ACA ACA ACA
   172366  CAT *  7    19/21     CAT CAT CAT CAT CAT CAG CAG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       249284 
 Total number of repeats detected..............       4 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    1 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    1 
   0 ATG +    0 TGA +   0 GAT +   1 CAT +   0 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    0 GCA +   1 CAG +   0 GCT +   0 CTG +    0 TGC      =    1 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7302062|gb|AE003779.1|AE003779 Drosophila melanogaster genomic scaffold 142000013386035 section 104 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    22507  CAG *  7    19/21     CAG CAG CAG CCG CAG CAG CAA
    22894  GCA * 11    30/33     GCA ACA ACA GCA GCA GCA GCA GCA GCA GCA ACA
    22931  CAG *  8    22/24     CAG CAG CAG CAG CAA CAG CAG CAA
    40752  TGC *  7    19/21     TGC TTC TGC TGC TTC TGC TGC
    43960  GCT *  8    22/24     GCT ACT GCT GCT GCT GCT GTT GCT
    56985  TCA *  7    19/21     TCA TGA TCA TAA TCA TCA TCA
    62280  GCA * 14    40/42     GCA ACA GCA GCA GCA GTA GCA GCA GCA GCA GCA GCA GCA GCA
    70057  GCA *  7    19/21     GCA GCA GCA GCC GCA ACA GCA
    70489  GCA * 12    33/36     GCA GCA ACA GCA GCA GCA GCA CCA GCA GCA GCA TCA
    70532  CAG *  7    20/21     CAG CAG CAG CAG CAA CAG CAG
    70556  CAG *  8    22/24     CAG CAG CAG CAG CAC CAG CAG CTG
    70696  GCC *  7    19/21     GCC TCC TCC GCC GCC GCC GCC
   133459  ACA *  8    22/24     ACA ACA ACA ACA ACA GCA GCA ACA
   167468  TGG * 10    27/30     TGG TGG TGG TGG TGG TGG TGG TGG TGG ACA
   173547  CCA *  7    19/21     CCA CCA CCG CCT CCA CCA CCA
   173681  GCC *  8    22/24     GCC GCC GCC GCC ACC ACC GCC GCC
   198239  AGC *  8    22/24     AGC AGC AAC AAC AGC AGC AGC AGC
   208520  CAA *  7    19/21     CAA CGG CAA CAA CAA CAA CAA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       232064 
 Total number of repeats detected..............       18 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      4       1       2       1       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      4       4       0       0       0       0       0       0       0       0       0       0       0   
  CCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    1 ACA +   1 CAA +   0 GTT +   0 TTG +    0 TGT      =    2 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    1 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   1 AGC +    4 GCA +   4 CAG +   1 GCT +   0 CTG +    1 TGC      =   11 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    1 CCA +   0 CAC +   0 GGT +   0 GTG +    1 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   2 GCC +   0 CCG +    0 CGC      =    2 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7302043|gb|AE003778.1|AE003778 Drosophila melanogaster genomic scaffold 142000013386035 section 103 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     2783  GCA *  9    25/27     GCA GGT GCA GCA GCA GCA GCA GCA GCA
     5773  GCA * 22    60/66     GCA GCA ACA GCA GCA GCA GCA GCA ACA GCA GCA GCA ACA GCA GCA GCA GCA ACA GCA ACA CCA GCA
    10848  GTT *  7    19/21     GTT GTT GTT GTT GGT GTT TTT
    55592  ATC * 21    59/63     ATC ATC ATC ATC CGC ATC ATC ATC ATC ATC ATT ATC ATC ATC ATC ATC ATC ATC ATC AGC ATC
    66771  CAG *  7    19/21     CAG CAG CAA CAG CAG CAG GAG
    86850  TGC *  7    19/21     TGC CGC TGC CGC TGC TGC TGC
    88866  CAA *  8    22/24     CAA CAA CAT CAA CAA CAG CAA CAA
   126191  CCT *  8    22/24     CCT CCT CCT GCT CCC CCT CCT CCT
   155894  GAG *  8    22/24     GAG GAG GAG GGG GAG CAG GAG GAG
   164531  GCC *  7    19/21     GCC GCC GCC GCC GCC GCC GGT
   164729  ACA *  7    19/21     ACA CCA ACA ACA AGA ACA ACA
   183064  GCA * 10    28/30     GCA GCA GCA GCA GCA GCA GCA ACT GCA GCA
   192833  CAC *  7    19/21     CAC CAG CAG CAC CAC CAC CAC
   198580  ATG *  8    22/24     ATG ATG ATG ATG ATG ATG ACG ACG
   212578  GTT *  8    22/24     GTT GTT GTT ATT GCT GTT GTT GTT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       225108 
 Total number of repeats detected..............       15 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATC      1       0       0       0       0       1       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCA      3       1       1       0       0       0       1       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    1 ACA +   1 CAA +   2 GTT +   0 TTG +    0 TGT      =    4 
   1 ATG +    0 TGA +   0 GAT +   0 CAT +   1 ATC +    0 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   1 GAG +   1 CCT +   0 CTC +    0 TCC      =    2 
   0 AGC +    3 GCA +   1 CAG +   0 GCT +   0 CTG +    1 TGC      =    5 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   1 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   1 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7302015|gb|AE003777.1|AE003777 Drosophila melanogaster genomic scaffold 142000013386035 section 102 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    13555  GAT *  7    19/21     GAT GTT GAT GAT GAT GAT GAG
    38918  AGG *  7    20/21     AGG AGG AGG AGG AGG AGG AGC
    55174  AAG *  7    20/21     AAG AAG AAG AAG AAG AAG GAG
    84507  TTG *  7    19/21     TTG TTC TGG TTG TTG TTG TTG
    94651  GCA *  9    25/27     GCA GCC GCA ACA GCA GCA GCA GCA GCA
    95126  CAG * 17    47/51     CAG CAG CAG CAG CAG CAG CAA CAG CAG CAG CAA CAG CAA CTG CAG CAG CAG
   101547  GTG *  7    19/21     GTG GTG GTG GTG GTG ATG GTA
   104779  TAT *  8    23/24     TAT TAT TAT TAA TAT TAT TAT TAT
   111329  CAT * 10    27/30     CAT CAT CAT CAG CAT CAT GAT CAT CAT CTT
   129568  AGT * 10    28/30     AGT ATT AGA AGT AGT AGT AGT AGT AGT AGT
   143412  AAT *  7    20/21     AAT AAT AAT AAA AAT AAT AAT
   177432  ATG *  8    22/24     ATG ATG ATG ATG ATG ATG ATG AGC
   180247  CTG * 10    28/30     CTG CTG ATG CTG CTG CTG CTG CTG CTT CTG
   206224  GCT *  7    19/21     GCT TCT GCT GCT GCT GCA GCT
   207479  ATG *  9    25/27     ATG ATG ATG ATG ATG GTG ATG ACG ATG
   207993  CAT * 10    27/30     CAT CAT CAT CAT CAT CAT CAT CAT CGT GCT
   228603  GCA *  7    19/21     GCA GCA GCA GCG GCA GCA GAA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       232000 
 Total number of repeats detected..............       17 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  AGT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  AGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      2       0       2       0       0       0       0       0       0       0       0       0       0   
  CAG      1       0       0       0       1       0       0       0       0       0       0       0       0   
  CTG      1       0       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    1 TAT      =    2 
   1 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    1 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   1 TTG +    0 TGT      =    1 
   2 ATG +    0 TGA +   1 GAT +   2 CAT +   0 ATC +    0 TCA      =    5 
   1 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    1 
   1 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   0 AGC +    2 GCA +   1 CAG +   1 GCT +   1 CTG +    0 TGC      =    5 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   1 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7301994|gb|AE003776.1|AE003776 Drosophila melanogaster genomic scaffold 142000013386035 section 101 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     9458  CAC *  7    19/21     CAC CAC CAC CAC CAC CAG CAG
    23311  CAA *  8    22/24     CAA CAG CAG CAA CAA CAA CAA CAA
    38989  TTG *  7    19/21     TTG TTG CTG CTG TTG TTG TTG
   118645  CTG *  8    22/24     CTG CTT CTG CTT CTG CTG CTG CTG
   137083  AAT *  7    19/21     AAT AAT AAC AAT AAC AAT AAT
   139530  AGC *  8    22/24     AGC AGC AGC AGC AGC AGC AAC AAC
   176421  GCA *  8    22/24     GCA GCA GCA GGA GCA GCA GCA CCA
   194580  ATT *  8    22/24     ATT ATT ATT ATT ATT ATT ATG ATG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       225879 
 Total number of repeats detected..............       8 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   1 ATT +   0 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   1 CAA +   0 GTT +   1 TTG +    0 TGT      =    2 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   1 AGC +    1 GCA +   0 CAG +   0 GCT +   1 CTG +    0 TGC      =    3 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   1 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7301969|gb|AE003775.1|AE003775 Drosophila melanogaster genomic scaffold 142000013386035 section 100 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

      657  TGC *  7    19/21     TGC TGC CGC TGC TGC TGC TGT
    90278  GAT *  7    19/21     GAT GAG GCT GAT GAT GAT GAT
    92592  CAC * 10    28/30     CAC CAG CAG CAC CAC CAC CAC CAC CAC CAC
   103783  CAG * 11    30/33     CAG CAG CAG CAA CTG CAG CAG CAG CAG CAG CAT
   107391  CAT *  7    21/21     CAT CAT CAT CAT CAT CAT CAT
   113941  AGC *  7    19/21     AGC AGC AAA AGC AGC AGC AGC
   115748  CAG * 12    33/36     CAG CAG CAG CAC CAG CAG CAG CAG CAA CAG CAT CAG
   115945  GCC *  7    20/21     GCC GCC GCC GCC GCC ACC GCC
   122313  TGT *  7    19/21     TGT TGT TGT TGT TGT TGC TCT
   122477  TGC * 10    28/30     TGC TGT TGC TGC TGC TGC TGC TGC TGT TGC
   122524  CTG *  8    22/24     CTG TTG TTG CTG CTG CTG CTG CTG
   122675  TGC *  7    19/21     TGC TGG TGC TGA TGC TGC TGC
   129691  ATT *  8    23/24     ATT ATT ATT ATT TTT ATT ATT ATT
   133877  TAG * 11    31/33     TAG TAG CAG TAG TAG TAG TAG TAA TAG TAG TAG
   137982  GTT *  7    19/21     GTT GTT GTG GTT GTT GTA GTT
   147273  GCA *  7    19/21     GCA ACT GCA GCA GCA GCA GCA
   170124  GGT * 10    27/30     GGT GCA GGT GGT GGT GGT GGT GGT GGT GGC
   204583  TGC *  7    20/21     TGC TGC TGC TGC TGC TGC TGG
   207075  CTG *  7    19/21     CTG CTG CTG CTG TTG CTG TTG
   207098  GCT *  7    19/21     GCT GCT GCT GCT GCT GCT GGG
   207587  CTG *  8    22/24     CTG TTG CTG CTG CTG CTG TTG CTG
   207618  TGC *  7    19/21     TGC TGT TGC TGT TGC TGC TGC
   207696  TGC * 11    30/33     TGC TGC TGC TGC TGT TGG TGC TGC TGC TGT TGC
   207735  TGC *  8    22/24     TGC TGC GGC TGC TGC TGC TGC TGG
   209033  TGC * 22    62/66     TGC TGC TGC TGC TGT TGT TGC TGC TGC TGC TGC TGT TGC TGC TGC TGC TGC TGC TGT TGC TGC TGC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       236109 
 Total number of repeats detected..............       25 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      8       5       2       0       0       0       1       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      2       0       2       0       0       0       0       0       0       0       0       0       0   
  CAC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CTG      3       3       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   1 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   1 GTT +   0 TTG +    1 TGT      =    2 
   0 ATG +    0 TGA +   1 GAT +   1 CAT +   0 ATC +    0 TCA      =    2 
   0 AGT +    0 GTA +   1 TAG +   0 ACT +   0 CTA +    0 TAC      =    1 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   1 AGC +    1 GCA +   2 CAG +   1 GCT +   3 CTG +    8 TGC      =   16 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   1 CAC +   1 GGT +   0 GTG +    0 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   1 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7301938|gb|AE003774.1|AE003774 Drosophila melanogaster genomic scaffold 142000013386035 section 99 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    30356  ATT * 11    30/33     ATT GTT ATT ATT ATT ATT ATT GTT ATT GTT ATT
    45398  CAG *  8    22/24     CAG CAG CAG CAG CAG CAG CAA CAC
    97404  AGT *  7    20/21     AGT AGT AGT AGT AGA AGT AGT
   116968  GGA *  7    19/21     GGA GGT GGA GGA GCA GGA GGA
   116990  ACC *  8    22/24     ACC ACC ACC ACC ACC ACG ACG ACC
   193067  ATA *  7    19/21     ATA ATA ATA ATA TTA ATA ATG
   220738  TGC *  8    22/24     TGC TGC TGC TGC TGC TCC TGC TCC
   231756  TAT *  7    19/21     TAT TAT TAT TAT TAT TAT ATT
   234334  GGA *  7    19/21     GGA GAA GGA GGC GGA GGA GGA
   234607  TTG *  7    20/21     TTG TTG TTG TTG TTG TTG TTT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       239003 
 Total number of repeats detected..............       10 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  AGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    1 ATA +   0 TAA +   1 ATT +   0 TTA +    1 TAT      =    3 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   1 TTG +    0 TGT      =    1 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   1 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    1 
   0 AGG +    2 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    2 
   0 AGC +    0 GCA +   1 CAG +   0 GCT +   0 CTG +    1 TGC      =    2 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   1 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7301915|gb|AE003773.1|AE003773 Drosophila melanogaster genomic scaffold 142000013386035 section 98 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    74206  CAG *  7    19/21     CAG CAG CAG CAC CAG CAA CAG
    74788  AAC *  8    22/24     AAC CGC AAC AAC AAC AAC AAC AAC
    75184  CAG *  8    23/24     CAG CAG CAG CAG CAA CAG CAG CAG
    75298  CAG * 10    27/30     CAG CAG CAG CAG CAG CAG CAG CTG CAA CAA
    91597  TGC *  7    20/21     TGC TGC TGC TGC TGC TGC TTC
    99706  ATT *  7    19/21     ATT ATT ATT ATT ATT TTT GTT
   111057  TCA * 22    60/66     TCA TTA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCG TGT CGA
   133245  CAG *  7    19/21     CAG CAG CAG CAG CAG CGG CAA
   133570  AAT *  7    19/21     AAT AAT AAG AAT AAG AAT AAT
   134799  CAG *  7    19/21     CAG CAG CAG CAG CAG CAA CAA
   154189  GCT * 12    33/36     GCT GCC GCT GCT GCT GCC GCT GCT GCT GCT GCT GCA
   155923  GCA * 11    30/33     GCA GCA GCA ACA GCA GCA GCA GCA GCA GCA ACC
   156014  CAG *  9    25/27     CAG CAG CAG CAG CAG CAG CAA CAT CAG
   156134  CAG * 11    30/33     CAG CAG CAG CAG CAC CAA CAG CAG CAG CAA CAG
   156266  AGC *  8    23/24     AGC AGC AGC AGC AGC AGC AGC AGT
   192544  AGC *  7    19/21     AGC AGC AAC AAC AGC AGC AGC
   192600  CAG *  7    19/21     CAG CAG CAA CAG CAG CAG CAA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       226905 
 Total number of repeats detected..............       17 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCA      1       0       0       0       0       0       1       0       0       0       0       0       0   
  GCA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GCT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CAG      8       6       2       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   1 ATT +   0 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    1 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    1 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   2 AGC +    1 GCA +   8 CAG +   1 GCT +   0 CTG +    1 TGC      =   13 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7301871|gb|AE003772.1|AE003772 Drosophila melanogaster genomic scaffold 142000013386035 section 97 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    13722  TCA *  7    19/21     TCA TCA TCA TCA TCT GCA TCA
    13949  CAG * 10    27/30     CAG CAG CAG CAG CAA CAG CAG CAG CAG GTG
    33456  GGA *  7    19/21     GGA GGA GGA TGA CGA GGA GGA
    67521  GGA *  8    22/24     GGA CGA GGA GGA GGA GGA GGA CGA
    82133  ACA *  7    19/21     ACA ATA ACA ACG ACA ACA ACA
    82594  CCT *  7    20/21     CCT CCG CCT CCT CCT CCT CCT
    84585  TGT * 10    27/30     TGT TGT TAT TGT TGT TGT TGT TGT TGT TTC
   103980  GCT *  8    22/24     GCT GCT GCT GCT GCT GCT GCT TTT
   117468  TCA * 13    36/39     TCA TCA TCA TCA TCA TCA TCA TCA TCA TTA CCA TCA TCT
   133228  CAG * 11    30/33     CAG CAG CAG CAG CAG CAA CAA CAG CAG CAG CAT
   133715  CAG *  8    22/24     CAG CAG CAG CAG CAG CAG CCG CAA
   133963  GCA *  7    19/21     GCA GCA ACA TCA GCA GCA GCA
   134054  CAG *  7    19/21     CAG CAG CAG CGT CAG CAG CAG
   134081  CAG * 10    28/30     CAG CAG CAA CAG CAG CAG CAG CAA CAG CAG
   135402  CAG * 12    34/36     CAG CAG CAA CTG CAG CAG CAG CAG CAG CAG CAG CAG
   135494  GCA * 12    33/36     GCA ACA GCA GCA GCA GCA GCA GCA ACA GCA ACA GCA
   225211  ATT *  7    19/21     ATT AAT ATT ATT ATT ATT ATA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       228448 
 Total number of repeats detected..............       17 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TCA      2       1       0       1       0       0       0       0       0       0       0       0       0   
  GGA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCA      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      6       2       4       0       0       0       0       0       0       0       0       0       0   
  CCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   1 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    1 ACA +   0 CAA +   0 GTT +   0 TTG +    1 TGT      =    2 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    2 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    2 GGA +   0 GAG +   1 CCT +   0 CTC +    0 TCC      =    3 
   0 AGC +    2 GCA +   6 CAG +   1 GCT +   0 CTG +    0 TGC      =    9 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7301817|gb|AE003771.1|AE003771 Drosophila melanogaster genomic scaffold 142000013386035 section 96 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    15779  GTT *  8    22/24     GTT GTT GCT GTT GTT GTT GCT GTT
    18395  GAG *  7    19/21     GAG GAG GAG GAG CAG GCG GAG
    18521  CAG *  7    19/21     CAG CAG CAG CTG CAG CAG CAC
    28187  AGC *  7    20/21     AGC AGC AGC AGC AGC AGC AAC
    33097  GCA *  8    22/24     GCA GCA GCA GCA GCA ACT GCA GCA
    33130  GCA *  7    19/21     GCA GCA ACA TCA GCA GCA GCA
    33152  CAG *  7    20/21     CAG CAG CAG CTG CAG CAG CAG
    33355  GCA *  9    25/27     GCA ACA GCC GCA GCA GCA GCA GCA GCA
    33418  GCA *  7    20/21     GCA ACA GCA GCA GCA GCA GCA
    33491  CAG *  7    20/21     CAG CAG CAG CAG CAG CAG CAA
    33595  GCA *  7    19/21     GCA GCA GCA GCA ACA GCA TCA
    56290  CAG * 12    33/36     CAG CAG CAG CAG CAG CAG CAG CAG CAT CAT CTG CAG
    56343  GCA *  8    23/24     GCA GCA GCA GCA GCA GCA ACA GCA
    56587  CAG *  8    22/24     CAG CAA CAG CAG CAG CAG CAG CAA
    56650  CAG *  7    19/21     CAG CAG CAG CAG CAG CAA CAT
   108951  TAT *  8    22/24     TAT TAT TAG TAT TAT TAT TAT TAA
   146558  CAG *  9    25/27     CAG CGG CAT CAG CAG CAG CAG CAG CAG
   168830  CAA *  7    19/21     CAA CAA CAA CAG GAA CAA CAA
   216747  TAA *  7    19/21     TAA TAA TAA TAA TAA TCA TTA
   220635  GCT * 10    27/30     GCT GCT GCT GGT GCT GCT GCT GCT GAT GTT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       235127 
 Total number of repeats detected..............       20 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      6       6       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      7       6       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   1 TAA +   0 ATT +   0 TTA +    1 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   1 CAA +   1 GTT +   0 TTG +    0 TGT      =    2 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   1 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   1 AGC +    6 GCA +   7 CAG +   1 GCT +   0 CTG +    0 TGC      =   15 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7301790|gb|AE003770.1|AE003770 Drosophila melanogaster genomic scaffold 142000013386035 section 95 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    39109  GCC *  8    22/24     GCC GCC GCC ACC GCC ACC GCC GCC
    42244  ATG *  7    20/21     ATG ATG ATG ATG ATG CTG ATG
    47242  CAG *  7    19/21     CAG CAA CAC CAG CAG CAG CAG
    48947  TGA *  8    23/24     TGA TGA TGA TGA TGA TGA TGA TGG
    52072  GCT *  8    22/24     GCT GTT GTT GCT GCT GCT GCT GCT
    52239  GCA *  7    19/21     GCA GCA GCA ACA GCA ACA GCA
    54035  GGA * 10    27/30     GGA AGA AGA GGA GGA GGA GGA GGA GGA GGG
    60539  TTG * 10    28/30     TTG TTG TAG TTG TTG TTG TTG CTG TTG TTG
    65385  AAC * 10    28/30     AAC AAC AAC AAC AAC AAC AAC AAC AGC AAG
    71659  GCG *  7    19/21     GCG GCG GCG ACG GCG GCG GGG
    79410  GTT * 14    38/42     GTT GTT ATT GTT GTT GTT GTT GTT GTT GCT GTG GTT GTT GTA
   123783  ACA *  8    22/24     ACA ACA ACA ACA ACA GCA AGA ACA
   131355  CCT *  8    22/24     CCT CCT CCT CCG CCA CCT CCT CCT
   182261  CAC * 11    31/33     CAC CAC CAC CAC CAC CAC CAC CAC CAC TAC CAT
   183773  CAG *  8    22/24     CAG CAG TCG CAG CAG CAG CAG CAG
   186040  CAG * 12    33/36     CAG CAG CAG CAA CAG CAG CAG CAG CAG CAG CAG AAC
   186094  CAG * 11    31/33     CAG CAA CAG CAG CAG CAG CAG CAA CAG CAG CAG
   208702  CAC * 10    27/30     CAC CAC CAA CAC CAC CAC CAC CAC CGC CGC
   218518  AAC *  8    22/24     AAC AAC AAT AAC AGC AAC AAC AAC
   218542  AAT *  9    25/27     AAT AAT AAT AAT AAT AGT AAT AAC AAT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       224100 
 Total number of repeats detected..............       20 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AAC      2       1       1       0       0       0       0       0       0       0       0       0       0   
  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       0       0       1       0       0       0       0       0       0       0       0       0   
  GGA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      4       2       2       0       0       0       0       0       0       0       0       0       0   
  CAC      2       0       2       0       0       0       0       0       0       0       0       0       0   
  CCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   2 AAC +    1 ACA +   0 CAA +   1 GTT +   1 TTG +    0 TGT      =    5 
   1 ATG +    1 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    1 GGA +   0 GAG +   1 CCT +   0 CTC +    0 TCC      =    2 
   0 AGC +    1 GCA +   4 CAG +   1 GCT +   0 CTG +    0 TGC      =    6 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   2 CAC +   0 GGT +   0 GTG +    0 TGG      =    2 
   0 GGC +    1 GCG +   0 CGG +   1 GCC +   0 CCG +    0 CGC      =    2 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7301774|gb|AE003769.1|AE003769 Drosophila melanogaster genomic scaffold 142000013386035 section 94 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    13512  ATA *  7    19/21     ATA ATA GTA ATA ATA ATA AAA
    54020  AGG * 10    28/30     AGG AGG AGG AGG AGG AGG AGG AGG AGG GGC
    63275  TTG * 10    27/30     TTG TTG TTG TCG TTG TTG TTG TTG TTG TGC
    63757  TTG *  8    24/24     TTG TTG TTG TTG TTG TTG TTG TTG
    64881  TGC *  8    23/24     TGC TGC TGC TGC TGC TGC TGC TGG
    71788  TTG * 10    27/30     TTG TTG TTG TTG TTG TTG TTG TTG TTA TGA
    75528  TGT * 10    28/30     TGT TGT TGT TGT TGT TGT TGT TCT TGT TAT
    77781  GTT *  7    19/21     GTT GTT GTT GTG GTT GCT GTT
    94832  CTT *  7    19/21     CTT CTT CTT CTG CGT CTT CTT
    94857  TTG * 11    30/33     TTG TTG TTG CTG TTG TTG TTG ATG TTG TTG TAG
   109393  GCA *  8    22/24     GCA GCA GCA GAA TCA GCA GCA GCA
   114218  TCA *  7    19/21     TCA TCA TCA TCA TCA TTA TCG
   116484  GAG *  7    19/21     GAG GAG GAG GAG TAG GTG GAG
   130756  TGC *  7    19/21     TGC TGC CGT TGC TGC TGC TGC
   155168  TGC *  9    25/27     TGC TGC TGC TGC TGC TGC TGC TGC AGA
   175147  TCA *  8    23/24     TCA TCA TCA TCA TCA ACA TCA TCA
   208190  CAG * 17    48/51     CAG CAG CAG CAG CAG CAG CAA CAG CAG CAG CAG CAG CAG CAG CAA CAA CAG
   214995  TTC *  7    19/21     TTC TAC TGC TTC TTC TTC TTC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       234161 
 Total number of repeats detected..............       18 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TTG      4       1       3       0       0       0       0       0       0       0       0       0       0   
  TTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGC      3       3       0       0       0       0       0       0       0       0       0       0       0   
  TCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       0       0       0       1       0       0       0       0       0       0       0       0   
  CTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    1 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   1 CTT +   1 TTC +    0 TCT      =    2 
   0 AAC +    0 ACA +   0 CAA +   1 GTT +   4 TTG +    1 TGT      =    6 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    2 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   1 AGG +    0 GGA +   1 GAG +   0 CCT +   0 CTC +    0 TCC      =    2 
   0 AGC +    1 GCA +   1 CAG +   0 GCT +   0 CTG +    3 TGC      =    5 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7301730|gb|AE003768.1|AE003768 Drosophila melanogaster genomic scaffold 142000013386035 section 93 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     4607  CTT *  7    19/21     CTT CTT CTT GGT CTT CTT CTT
    25804  CGA *  7    19/21     CGA CGA CGA CGA TGA CTA CGA
    50160  GTT * 12    33/36     GTT GTT GTT GTT GTT GTT GTT GTT GTT GTT GCT CTC
    63061  AGG *  7    19/21     AGG AGG AGA ACG AGG AGG AGG
    65283  CAG *  7    19/21     CAG CAG CAG CAG CAA CAA CAG
    65495  GCA * 10    27/30     GCA GCA GCA GCA GCA GCA GCA TCA GCA GTT
    65667  CAG *  8    23/24     CAG CAG CCG CAG CAG CAG CAG CAG
    65769  CAG *  7    20/21     CAG CAG CAG CAA CAG CAG CAG
    65994  CAA *  7    19/21     CAA CAG CAG CAA CAA CAA CAA
    66818  GCA *  9    25/27     GCA GCA GCA GCA GCA ACA ACA GCA GCA
    67188  GAC *  7    19/21     GAC GAT GAC GAC GAC GAG GAC
    70102  GCA *  7    19/21     GCA GCC GCA GCA GCA GCA ACA
    70676  CAA *  8    22/24     CAA CAA CAA CAA CAG CAG CAA CAA
    70952  CAG *  8    22/24     CAG CAG CAA CAG CAG CAG CAG CCG
    73425  CAG *  8    22/24     CAG CAG CAG CAA CAG CAC CAG CAG
   142408  GTG * 10    28/30     GTG GTG GTG GTG GTG GTG GTG TTG GCG GTG
   148802  TGC * 15    41/45     TGC TGC TGG TGC TGC TGG TGC TGC TGC TGC TGC TGC TGC TGT TGG
   161902  TGC *  7    19/21     TGC TGC TGC TGC TGC TGC CTC
   172240  GTT *  8    22/24     GTT GTT GTT GTT GTT GTT GTT TTC
   172283  TGT *  7    19/21     TGT TGT TGT TGT TGT TGT TCC
   178514  CCT *  7    19/21     CCT CCT CCT CCT GTT CCT CCT
   180751  AAG *  8    22/24     AAG AAG AAG AAT AAG CAG AAG AAG
   185798  AGC *  7    20/21     AGC AGC CGC AGC AGC AGC AGC
   185828  CAG *  7    19/21     CAG GAA CAG CAG CAG CAG CAG
   221075  TGG *  8    22/24     TGG TGG TGG TGG TGG CGT TGG TGG
   231963  GTG *  8    22/24     GTG GTG GTG GTG GTG GTG GTG GCA
   232025  GGT *  7    19/21     GGT GGT GAT GGT GGT GGT CGT
   236605  CAG *  7    19/21     CAG GAG CAG GAG CAG CAG CAG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       242815 
 Total number of repeats detected..............       28 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       1       0       1       0       0       0       0       0       0       0       0       0   
  GAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GTG      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      3       2       1       0       0       0       0       0       0       0       0       0       0   
  CAA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAG      7       7       0       0       0       0       0       0       0       0       0       0       0   
  CTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   1 AAG +    0 AGA +   0 GAA +   1 CTT +   0 TTC +    0 TCT      =    2 
   0 AAC +    0 ACA +   2 CAA +   2 GTT +   0 TTG +    1 TGT      =    5 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   1 AGG +    0 GGA +   0 GAG +   1 CCT +   0 CTC +    0 TCC      =    2 
   1 AGC +    3 GCA +   7 CAG +   0 GCT +   0 CTG +    2 TGC      =   13 
   0 ACG +    1 CGA +   1 GAC +   0 CGT +   0 GTC +    0 TCG      =    2 
   0 ACC +    0 CCA +   0 CAC +   1 GGT +   2 GTG +    1 TGG      =    4 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7301701|gb|AE003767.1|AE003767 Drosophila melanogaster genomic scaffold 142000013386035 section 92 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     1815  TGC *  8    22/24     TGC TGC CGC CGC TGC TGC TGC TGC
    18312  TGG *  8    22/24     TGG TGG TGG CGG TGG TGG AGG TGG
    28452  ATG *  8    23/24     ATG ATG ATG GTG ATG ATG ATG ATG
    43918  GCA *  8    23/24     GCA GCA GCA ACA GCA GCA GCA GCA
    44217  CAC *  7    19/21     CAC CAT CAC CAC CAC CAC CAG
    52915  GCT *  8    22/24     GCT GCT GCT GCT GGT GGT GCT GCT
    61908  CAT *  7    19/21     CAT CAT CAT CAT CAC CAG CAT
    78811  CTG *  7    19/21     CTG CTG CTG CTG CTG CTG GAG
    79276  GCG *  7    19/21     GCG GCG GCG GCG GCA GCG GTG
   102429  AGC *  9    25/27     AGC AGC AGC AGC AGC AGC AGC AGC AAG
   102518  GCA *  7    19/21     GCA GCA ACA GCA GCA GCA ACA
   103065  CAG *  7    19/21     CAG CAA CAT CAG CAG CAG CAG
   103421  GCA *  8    22/24     GCA ACA GCA ACA GCA GCA GCA GCA
   105377  CAG *  7    19/21     CAG CAG CAG CAG CAG CAG CGT
   105526  GCA *  7    19/21     GCA GCA GCA GCA GCA GCA ACG
   111343  ATG *  7    20/21     ATG ATG ATG ATG ATG ATG TTG
   120158  TTG *  7    19/21     TTG TTG TTG ATG TCG TTG TTG
   123010  ACA *  7    19/21     ACA ACA ACA ACA ACA ATA ATA
   141508  CAG *  7    19/21     CAG CCG CAG CAG TAG CAG CAG
   151497  GCA *  7    19/21     GCA GCA GCA GCA AGA GCA GCA
   152274  TTA *  8    22/24     TTA TTA TTA TTA TTA TTA CGA TTA
   164665  GCT *  8    22/24     GCT GCT GCT TCT GTT GCT GCT GCT
   167267  GAT *  8    22/24     GAT GAT GAT GAC GAT GAT GTT GAT
   171214  TTG *  7    19/21     TTG TTG TTG TTG CTG TTG CTG
   189688  AAC *  7    19/21     AAC AAA AAC AAC AAC AAC AGC
   193327  AAC *  7    19/21     AAC AAC AAC AAC AAC AGC AGC
   193521  CAA * 11    30/33     CAA CAA CAA CAA CAA CAT CAA CAA CAG CAA GAA
   202978  CAT *  7    19/21     CAT CAC CAT CAT CAT CAT CAC
   222574  CAG *  7    19/21     CAG CAG CAT CAG CAG CAG CAA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       225155 
 Total number of repeats detected..............       29 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  ATG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      5       5       0       0       0       0       0       0       0       0       0       0       0   
  GCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAG      4       4       0       0       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   1 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   2 AAC +    1 ACA +   1 CAA +   0 GTT +   2 TTG +    0 TGT      =    6 
   2 ATG +    0 TGA +   1 GAT +   2 CAT +   0 ATC +    0 TCA      =    5 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   1 AGC +    5 GCA +   4 CAG +   2 GCT +   1 CTG +    1 TGC      =   14 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   1 CAC +   0 GGT +   0 GTG +    1 TGG      =    2 
   0 GGC +    1 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7301683|gb|AE003766.1|AE003766 Drosophila melanogaster genomic scaffold 142000013386035 section 91 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    13740  CTG *  7    19/21     CTG CTG TTG TTG CTG CTG CTG
    13911  CTG *  8    22/24     CTG CTG CAT CTG CTG CTG CTG CTG
    13940  GCT *  8    22/24     GCT GGT GCT GCT GCT GTT GCT GCT
    15484  CCG *  7    19/21     CCG CCG CCG CCT CCA CCG CCG
    16149  TGC *  8    22/24     TGC TGC TGC TTT TGC TGC TGC TGC
    29280  TCA *  7    19/21     TCA TCA TCA TCA TCG TCT TCA
    34111  CGG *  7    19/21     CGG TGG TGG CGG CGG CGG CGG
    51052  CAT *  7    19/21     CAT CAT CAT CAT GAT CAT CGT
    65446  GGT *  7    19/21     GGT GGT GAT AGT GGT GGT GGT
    95250  CTG * 10    28/30     CTG CTG CTC CTG CTG CTG CTG CTG CTG TTG
    96206  TAT *  8    23/24     TAT TAT TAT TAT TAT TGT TAT TAT
   113837  CAT *  7    20/21     CAT CAT CAT AAT CAT CAT CAT
   131927  AGC * 10    27/30     AGC AGC AGC AGC ATC AGC ATC AGC AGC AAC
   132615  GAT * 12    33/36     GAT GAT GAT GAT GAT GAT GAT GAT GAT GAC GAC GAC
   134635  GTT *  8    22/24     GTT CCT GTT GTT GTT GTT GTT GTT
   139631  CAG * 11    30/33     CAG CAG CAG CAG CAG CAG CAG AAG GAG CAA CAG
   148354  CTG *  7    19/21     CTG CTG TTG CTG GTG CTG CTG
   158492  CAG *  7    19/21     CAG CAG CTG CAG CAG TAG CAG
   175978  CCT *  7    19/21     CCT CTT CCT CCT CAT CCT CCT
   205546  TGA *  7    19/21     TGA TGA TGA TGA TAA TGA TGG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       225894 
 Total number of repeats detected..............       20 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AGC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAG      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CTG      4       3       1       0       0       0       0       0       0       0       0       0       0   
  CGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    1 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   1 GTT +   0 TTG +    0 TGT      =    1 
   0 ATG +    1 TGA +   1 GAT +   2 CAT +   0 ATC +    1 TCA      =    5 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   1 CCT +   0 CTC +    0 TCC      =    1 
   1 AGC +    0 GCA +   2 CAG +   1 GCT +   4 CTG +    1 TGC      =    9 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   1 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   1 CGG +   0 GCC +   1 CCG +    0 CGC      =    2 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7301668|gb|AE003765.1|AE003765 Drosophila melanogaster genomic scaffold 142000013386035 section 90 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     4390  TGG *  7    19/21     TGG CGG TGG TGG TGG TGG TGT
    12078  ACA *  8    22/24     ACA ACA ATA ACA ACA ACA ACA ACT
    29437  TCC *  7    19/21     TCC TCC TCC TCC TCC TCT TCT
    70121  GCT * 10    27/30     GCT GCT GCT GCT GCG GCT GCT GCT GCG ACT
   108333  GCT *  7    19/21     GCT CCT GCT GCT TCT GCT GCT
   109569  GCA *  7    19/21     GCA GCG GCA GCA GAA GCA GCA
   117826  CAG *  7    19/21     CAG CAG AAG CAG CAT CAG CAG
   128265  CAG *  9    25/27     CAG CAG GAG CAG CAG CAG CAG CAG CAT
   132036  CAG *  8    22/24     CAG CAG CAA CAG GAG CAG CAG CAG
   149241  AGA *  7    19/21     AGA AGA AGA AGA ACT AGA AGA
   160399  CTG *  7    19/21     CTG GTG CTA CTG CTG CTG CTG
   205012  TGC *  8    23/24     TGC TCC TGC TGC TGC TGC TGC TGC
   205048  GAT *  8    22/24     GAT GAT GAT GGC GAT GAT GAT GAT
   224478  GCA * 10    27/30     GCA GCA GCA GCA GCA GCA GGA GCA GGA GAA
   229181  ACG *  8    22/24     ACG ACG ACG ACG ACG ACG ACG AGC
   231560  GGT *  9    25/27     GGT GGT GGT GGC GGT GGT GGT GGT GGG
   235239  GCT *  7    19/21     GCT GCT GCT GTT GCT GTT GCT
   236263  TGC *  9    25/27     TGC TGC TGC TGC TAC TGC TGC TGT TGC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       239098 
 Total number of repeats detected..............       18 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GCT      3       2       1       0       0       0       0       0       0       0       0       0       0   
  CAG      3       3       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    1 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    1 
   0 AAC +    1 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    1 
   0 ATG +    0 TGA +   1 GAT +   0 CAT +   0 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    1 TCC      =    1 
   0 AGC +    2 GCA +   3 CAG +   3 GCT +   1 CTG +    2 TGC      =   11 
   1 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   1 GGT +   0 GTG +    1 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7301658|gb|AE003764.1|AE003764 Drosophila melanogaster genomic scaffold 142000013386035 section 89 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     7677  AGC * 11    30/33     AGC AGC AGC AGC AGC AGC AGC AGC AGG AGC ATT
    26828  GCT *  7    19/21     GCT GCT GCT GCT GCT GCT TTT
    31100  ACA *  7    19/21     ACA ACA ACA ACA GCA ACA AAA
    38341  AGC *  7    19/21     AGC GGC AGC AGC AGC AGC ATC
    49590  GCA *  7    19/21     GCA GCA GCA ACA GCA ACA GCA
    49617  GCA * 10    27/30     GCA ACA GCA ACA GCA GCA GCA GCA GCA GCT
    75099  ATA * 18    50/54     ATA ATA ACA ATA ATA ATA ACA ATA ATA ATA ATA ATA TTA ATA ATA ATT ATA ATA
    82061  ATA * 18    50/54     ATA ATA ACA ATA ATA ATA ACA ATA ATA ATA ATA ATA TTA ATA ATA ATT ATA ATA
    91247  AGC *  7    19/21     AGC AGC AGC AGA AGG AGC AGC
    93585  CAC *  7    19/21     CAC CAC CAC CAC TAC CAT CAC
    95724  GGT *  7    19/21     GGT GGT GGT GCT AGT GGT GGT
   139194  CAG *  7    19/21     CAG CAG CAC CAG CAG CAG CAA
   139218  CAG *  7    19/21     CAG CAG CAG CAG CAG CAG ATG
   139301  GCA *  8    22/24     GCA GCA GCT GCA GCA GCT GCA GCA
   139356  CAG *  7    19/21     CAG CAT CAG CAG CAG CAG CAC
   139412  GCA *  9    25/27     GCA GCA GCA ACA GCA ACA GCA GCA GCA
   139453  AGC *  8    22/24     AGC AGC AGC CGC AGC AAC AGC AGC
   143673  CTA *  8    22/24     CTA CTA CTA CTA CTA CTA CTA ATG
   147562  AGC *  8    22/24     AGC AGC AGC AGC AGC AGC AGT TGC
   176698  TGC *  7    19/21     TGC TGC TGC TGC TGC GGC TGT
   187812  CTG *  7    19/21     CTG TTG CTG CTG CTG ATG CTG
   187837  TGC *  8    22/24     TGC TGC TGT TGC TGT TGC TGC TGC
   203224  CAG *  7    19/21     CAG CAG CAA CAG CAG CAG CGG
   215777  CTG *  7    19/21     CTG CTG CTG CTC CTG CTG TTG
   222590  CTG *  8    22/24     CTG GTG ATG CTG CTG CTG CTG CTG
   226056  GTG *  7    19/21     GTG GTG TTT GTG GTG GTG GTG
   227171  TGC *  7    19/21     TGC TGC TGG TAC TGC TGC TGC
   227222  TGC *  8    23/24     TGC TGC TGT TGC TGC TGC TGC TGC
   227249  TGC *  8    22/24     TGC TGC TGC TGC TGC TGC TGT TGT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       231691 
 Total number of repeats detected..............       29 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATA      2       0       0       0       2       0       0       0       0       0       0       0       0   
  AGC      5       4       1       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      5       5       0       0       0       0       0       0       0       0       0       0       0   
  GTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      4       3       1       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      4       4       0       0       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      3       3       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    2 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    1 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    1 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   1 CTA +    0 TAC      =    1 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   5 AGC +    4 GCA +   4 CAG +   1 GCT +   3 CTG +    5 TGC      =   22 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   1 CAC +   1 GGT +   1 GTG +    0 TGG      =    3 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7301637|gb|AE003763.1|AE003763 Drosophila melanogaster genomic scaffold 142000013386035 section 88 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    15394  TGC *  7    19/21     TGC TGC TGC TCC TTC TGC TGC
    16189  CAG * 12    34/36     CAG CAG CAG CAG CAG CAG CAG CAG CAG CAA AAG CAG
    18698  TGA *  7    19/21     TGA TGA TGC TGA TGA TGA TGG
    28136  TCC * 10    27/30     TCC TCG TCG TCC TCC TCC TCC TCC TCC TCG
    37882  AGG *  7    19/21     AGG AGG CGC AGG AGG AGG AGG
    44661  CTC *  7    19/21     CTC CAC CAC CTC CTC CTC CTC
    47563  CCA *  8    22/24     CCA CCG CCA CCA CCA GCA CCA CCA
    47596  CCA *  8    22/24     CCA CCG CCA CCA CCA GCA CCA CCA
    47662  CCA * 10    27/30     CCA CCG CCA CCA CCA CCA CCA GCA CCA CCT
    47700  ACC *  7    19/21     ACC GCC GCC ACC ACC ACC ACC
    55209  GGC *  7    19/21     GGC GGA GGC GGC GGC GGT GGC
    86131  TAA *  7    19/21     TAA TAA TAA TAA TAA TAT TTA
   103600  CAG *  7    19/21     CAG CAG CAT CAG CAG CAG GAG
   104905  TGC *  7    19/21     TGC TGC TGC TCC TGC TCC TGC
   136175  ACC *  8    22/24     ACC ACC ACC ACT ACC ACC ATC ACC
   150255  AGC *  8    22/24     AGC AGA AGC AGA AGC AGC AGC AGC
   154831  CAG *  7    20/21     CAG CAG CAG CAG CAG CAA CAG
   154866  GCA *  8    22/24     GCA GCA GCA GCA GCA GGT GCA GCA
   154951  CAG *  8    22/24     CAG CAG CAG CAG CAA CAG CAG CAT
   154996  CAG *  8    22/24     CAG CAG CAG CAG TCG CAG CAG CAG
   155121  GCA *  9    25/27     GCA GCA GCA GCA GCA GCA GCA GTA CCA
   157319  ATG *  7    19/21     ATG ATA ATG ATG ATG ATG ATT
   163601  CAC *  7    19/21     CAC CAC TAC CAC CAC TAC CAC
   173455  TTA *  7    20/21     TTA TTA TTA TTA TTA TTA TGA
   177590  GTG *  7    20/21     GTG GTG GTG GTG GTG TTG GTG
   188922  AAC *  8    22/24     AAC AAC AAC AAC AAC AAG AAC AGC
   193885  ATT *  7    19/21     ATT ATT ATT ATT ATT ATT CAT
   199924  AGC *  7    19/21     AGC AGA AGC ATC AGC AGC AGC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       203557 
 Total number of repeats detected..............       28 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  ACC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TCC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAG      5       4       1       0       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCA      3       2       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   1 TAA +   1 ATT +   1 TTA +    0 TAT      =    3 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    1 
   1 ATG +    1 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   1 AGG +    0 GGA +   0 GAG +   0 CCT +   1 CTC +    1 TCC      =    3 
   2 AGC +    2 GCA +   5 CAG +   0 GCT +   0 CTG +    2 TGC      =   11 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   2 ACC +    3 CCA +   1 CAC +   0 GGT +   1 GTG +    0 TGG      =    7 
   1 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7301615|gb|AE003762.1|AE003762 Drosophila melanogaster genomic scaffold 142000013386035 section 87 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    20389  ACC *  8    22/24     ACC ACC TCC ACC ACC ACC ACC GCC
    29799  GCA *  7    19/21     GCA GCA GCC GCA TCA GCA GCA
    39609  GCA *  7    19/21     GCA GAA GAA GCA GCA GCA GCA
    41078  CAG *  7    19/21     CAG CAG CAG CAG CAG CAG CCA
    53534  GCT *  7    19/21     GCT GCT TCT GCT GCT GCT GTT
    58608  GCA *  7    19/21     GCA GCA GCA GAA GCA GCA GCC
    65877  CAC *  7    20/21     CAC CAA CAC CAC CAC CAC CAC
    70007  ATA *  8    22/24     ATA ATA ATA ATA ATA ATA ATA TTC
   111344  GCA * 12    33/36     GCA GGA GCA GCA GCA GCA GCA GCA GCA GCA GCT GGA
   119838  CAT * 10    28/30     CAT CAT CAT CAT CAT CAT CAT CGT CAT CAG
   157996  GAA *  7    19/21     GAA GGA GAA GAA GCA GAA GAA
   172722  CTG *  8    22/24     CTG CTG CTG CTG CTG CTA CTT CTG
   181577  AAT *  8    22/24     AAT AAT AAT AAT AAT AAT AAT AGG
   209314  ATC *  7    19/21     ATC ATC ATC ATC ATC AGC AGC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       230995 
 Total number of repeats detected..............       14 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      4       3       1       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    1 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   1 GAA +   0 CTT +   0 TTC +    0 TCT      =    1 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    0 
   0 ATG +    0 TGA +   0 GAT +   1 CAT +   1 ATC +    0 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    4 GCA +   1 CAG +   1 GCT +   1 CTG +    0 TGC      =    7 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   1 ACC +    0 CCA +   1 CAC +   0 GGT +   0 GTG +    0 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7301591|gb|AE003761.1|AE003761 Drosophila melanogaster genomic scaffold 142000013386035 section 86 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     1344  GCT *  8    23/24     GCT GCT GCT GCT GCT GCT GCT GCA
    17152  TGT *  7    20/21     TGT TGT TGT TGT TGT TTT TGT
    17228  CAA * 11    30/33     CAA CAA CAA CAA CAA CAA CAG CAA CTA CCA CAA
    24256  TGC *  7    19/21     TGC TAC TGC TGC TGC TGC TGG
    76022  CAA *  8    22/24     CAA CAA CAA CAA CAA CGA CAA CTA
    83616  GCA *  9    26/27     GCA GCA GCA GCA GGA GCA GCA GCA GCA
    96134  AGC *  7    19/21     AGC AAC AAC AGC AGC AGC AGC
    96720  GCA *  9    25/27     GCA GCA GGA GCA GCA GCA GCA GCA GGA
   122051  TTG * 10    27/30     TTG TTC TTG TTG TTG TTG TTG TTG TTC TCG
   131527  CTG *  7    20/21     CTG CTG CTG TTG CTG CTG CTG
   134665  TCC *  8    22/24     TCC TCC TCC TCC TCC TCC TCC TTG
   171071  AAT *  7    19/21     AAT AAT AAT ATT AAA AAT AAT
   205727  GAT *  8    22/24     GAT GAT TAT AAT GAT GAT GAT GAT
   211417  CGT *  7    19/21     CGT CGT CGT CGT CAT CGT TGT
   211494  TGC * 14    38/42     TGC TGC TGC TGT TGC TGC TGC TGC TGC TGC TGC AGC TGT TGT
   219789  TGC *  7    19/21     TGC GGC TGC TGC TGC TGC AGC
   219860  TGC *  8    23/24     TGC TGC TGC TGC TGC TGC TGC TTC
   221376  TTG * 11    31/33     TTG TTG GTG TTG TTG TTG TTG TTG TTG TTG TTT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       224614 
 Total number of repeats detected..............       18 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      2       0       2       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      4       3       0       1       0       0       0       0       0       0       0       0       0   
  TCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   2 CAA +   0 GTT +   2 TTG +    1 TGT      =    5 
   0 ATG +    0 TGA +   1 GAT +   0 CAT +   0 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    1 TCC      =    1 
   1 AGC +    2 GCA +   0 CAG +   1 GCT +   1 CTG +    4 TGC      =    9 
   0 ACG +    0 CGA +   0 GAC +   1 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7301559|gb|AE003760.1|AE003760 Drosophila melanogaster genomic scaffold 142000013386035 section 85 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     6626  GCA *  7    19/21     GCA GCA GCT GCG GCA GCA GCA
     7383  TCA *  7    19/21     TCA TCA TCA TCA TCA CCA CCA
     7526  CAA *  8    22/24     CAA CAA CAA CAA CAA CAA AAG CAA
    23527  CCT *  7    20/21     CCT CCT CCT CCT CCC CCT CCT
    27187  CCT *  7    19/21     CCT CAC CCT CCT CCT CCT CCT
    32504  TGT *  7    20/21     TGT TGT TGT TGT TGT TGT TCT
    52848  ACT * 10    28/30     ACT ACT ACT ACT ACT CCT ACT ACT CCT ACT
    61667  CAT * 10    28/30     CAT CAT CAT CAT CAT CAT CAT CAG CAG CAT
    79009  TGA * 20    54/60     TGA CAA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGG TAG TGG
    84762  AGC *  7    19/21     AGC AGC AGC AGA GGC AGC AGC
    85280  ATG * 11    30/33     ATG ATG ATG ATG ATG ATG ATG ATG TTG ATG GGG
    94568  GTG *  9    25/27     GTG GTG GTG GTG GTG GTG GTG CTG CTG
    94663  ACA * 11    30/33     ACA ACC GCA ACA ACA ACA ACA ACA ACA AGA ACA
   102632  GCA *  7    20/21     GCA GCA GCA GCA GCA GCA GGA
   102679  AGC *  9    25/27     AGC AGG AGC AGC AGC AGC AGC AAC AGC
   113679  TGT *  7    19/21     TGT CGT TGT TGT TGT TGC TGT
   121552  CAA *  9    25/27     CAA CAA CAA CAA CAA CAA CAA CAA CTC
   128472  AGC *  7    19/21     AGC AGC AGC AGC AGC AGC ACA
   132610  CAG *  8    23/24     CAG CAG CAG CAG CAT CAG CAG CAG
   134081  AGC *  9    25/27     AGC ATC ATC AGC AGC AGC AGC AGC AGC
   137163  TAT * 10    29/30     TAT TAT TAT TAT TAT TAT TAT TAT TTT TAT
   162940  CCG *  7    19/21     CCG CCG CCC CCG CCA CCG CCG
   177803  CTG *  9    25/27     CTG CTG CTG CTG CTG CTG CTG CTG TTT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       198310 
 Total number of repeats detected..............       23 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  AGC      4       4       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  ACT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TAT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGA      1       0       0       0       0       1       0       0       0       0       0       0       0   
  TGT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    1 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    1 ACA +   2 CAA +   0 GTT +   0 TTG +    2 TGT      =    5 
   1 ATG +    1 TGA +   0 GAT +   1 CAT +   0 ATC +    1 TCA      =    4 
   0 AGT +    0 GTA +   0 TAG +   1 ACT +   0 CTA +    0 TAC      =    1 
   0 AGG +    0 GGA +   0 GAG +   2 CCT +   0 CTC +    0 TCC      =    2 
   4 AGC +    2 GCA +   1 CAG +   0 GCT +   1 CTG +    0 TGC      =    8 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   1 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   1 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7301528|gb|AE003759.1|AE003759 Drosophila melanogaster genomic scaffold 142000013386035 section 84 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    33941  GAG *  8    22/24     GAG GAG GAG GAG GAG GAT GAG GTG
    38623  CGG *  7    19/21     CGG CGG CGG CTC CGG CGG CGG
    39672  ATG *  7    20/21     ATG ATG ATG ATG ATG ATG ATT
   114317  TGC * 10    27/30     TGC TGC TGC TGC TGC TGC TGC TCC AGC TGA
   115837  GGT *  8    22/24     GGT GGT GGT GGT GGT GCT AGT GGT
   122464  TCA * 11    30/33     TCA TCA TCA TCA TCA TCA TCA TCA TCA GCC CCA
   123803  GGC * 11    30/33     GGC GGC GGC GGC GGC GGC GGC GGT GAC GAC GGC
   126166  GTT *  9    25/27     GTT GTT GTT GTT GTT GTT GTT GTT GGC
   139597  TAA *  8    23/24     TAA TGA TAA TAA TAA TAA TAA TAA
   139623  TAA *  7    19/21     TAA TAA TAA TAA TAA TAA AAT
   180498  TGC *  7    19/21     TGC TGC TGC TGC TGC AGT TGC
   180992  TGC *  8    22/24     TGC TCA TGC TGC TGC TGC TGC TGC
   181646  ATT *  7    19/21     ATT ATT ATT ATT ATT TGT ATT
   182407  TGG *  8    23/24     TGG TGG TGG TGG TGG TGG TGG TGA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       226471 
 Total number of repeats detected..............       14 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      3       2       1       0       0       0       0       0       0       0       0       0       0   
  TCA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   2 TAA +   1 ATT +   0 TTA +    0 TAT      =    3 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   1 GTT +   0 TTG +    0 TGT      =    1 
   1 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    1 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   1 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   0 AGC +    0 GCA +   0 CAG +   0 GCT +   0 CTG +    3 TGC      =    3 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   1 GGT +   0 GTG +    1 TGG      =    2 
   1 GGC +    0 GCG +   1 CGG +   0 GCC +   0 CCG +    0 CGC      =    2 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7301501|gb|AE003758.1|AE003758 Drosophila melanogaster genomic scaffold 142000013386035 section 83 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     6251  CCA *  7    19/21     CCA CCA CCA TCA CCA TCA CCA
     6536  CAG *  7    19/21     CAG CAG CAG GAG CAG CAG AAG
    11784  CTA * 14    38/42     CTA TTA ATA CTA CTA CTA CTA CTA CTA CTA CTA CTA GTA CTC
    24086  ACG *  7    19/21     ACG ACT ACG ACG ATG ACG ACG
    29305  ATA * 14    38/42     ATA ATA ATA ATA ATA ATA ATA ATG ATA ATG ATA ATG ATA AAA
    41585  TGT * 17    46/51     TGT TGT TGT TGT TGT TGT TGT TGT TCT GGT TGT TGT TGT TGC TGT GGT TGC
    44450  CAT *  8    22/24     CAT CAT CAT CAT CAT CAT CAC CAC
    45447  CAG *  7    19/21     CAG GAG CAG GAG CAG CAG CAG
    55775  TGC *  8    22/24     TGC TGC TGC TGC TGG TGC TAC TGC
    59336  GCT *  7    19/21     GCT GCT GCT GCT GCT GTT GGT
    76192  CAG *  7    19/21     CAG CAG CAG TAG CAG CAG CAA
    77260  CTC *  7    19/21     CTC CTC CTC CTC CTC ATC ATC
    88916  GCT *  7    19/21     GCT GCT GCT GCT GCT GTT GTT
    90260  CAT *  8    22/24     CAT CAT CAT CAT CAT CAT CCT CGT
    91267  CAG *  9    25/27     CAG CAG CAG CAG CAG CAG CAG CAG CTC
    92697  GAT *  8    22/24     GAT GAT GGT GAT GAT GAT GAT GCT
    93310  TAA *  7    19/21     TAA TAA TAA TAA TAA AAA AAA
   109656  ACA * 15    41/45     ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA GCA GCA GCA GCA
   120674  TCG *  7    19/21     TCG TCT TCG TCG TCG TTG TCG
   148007  CCA *  8    22/24     CCA CCA CCA TCA CCA CCA ACA CCA
   149376  CCT * 10    28/30     CCT CCT CCT CCA CCT CCT CCT CCT CCT GCT
   220518  AGC *  7    19/21     AGC AGC AAC AAC AGC AGC AGC
   220574  CAG *  7    19/21     CAG CAG CAA CAG CAG CAG CAA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       225036 
 Total number of repeats detected..............       23 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATA      1       0       0       1       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       0       0       1       0       0       0       0       0       0       0       0       0   
  ACG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       0       0       0       1       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAG      5       5       0       0       0       0       0       0       0       0       0       0       0   
  CTA      1       0       0       1       0       0       0       0       0       0       0       0       0   
  CTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CCT      1       0       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    1 ATA +   1 TAA +   0 ATT +   0 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    1 ACA +   0 CAA +   0 GTT +   0 TTG +    1 TGT      =    2 
   0 ATG +    0 TGA +   1 GAT +   2 CAT +   0 ATC +    0 TCA      =    3 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   1 CTA +    0 TAC      =    1 
   0 AGG +    0 GGA +   0 GAG +   1 CCT +   1 CTC +    0 TCC      =    2 
   1 AGC +    0 GCA +   5 CAG +   2 GCT +   0 CTG +    1 TGC      =    9 
   1 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    1 TCG      =    2 
   0 ACC +    2 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7301475|gb|AE003757.1|AE003757 Drosophila melanogaster genomic scaffold 142000013386035 section 82 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

      683  TAG *  8    22/24     TAG TAG TAG TAG AAG TCG TAG TAG
     1619  AGC * 10    27/30     AGC AGC AGC AGG TGC AGC AGC AGC AGC AAC
     6336  AAG *  7    19/21     AAG AAG CAG AAG AAA AAG AAG
     6446  CAC *  7    19/21     CAC AAC CAC CAC CAC GAC CAC
     6586  GCA *  8    22/24     GCA GTA GCA GCA GCA GCA ACA GCA
     7572  AAT *  7    20/21     AAT AAT AAT AAT AAT AAT AGT
    26581  TTG *  7    19/21     TTG TTG TTG TTG TTG TTG CGG
    31980  TTG *  7    19/21     TTG TTG TTG TTG TTG TTG CGG
    42623  CAG *  8    22/24     CAG CAA CAG CAG CAG CAG CAG CTG
    61065  AGC * 10    27/30     AGC AGC AGC AGC AAC AGC AAC AGC AGC AGG
    65995  CTG *  7    20/21     CTG CTG CTG CAG CTG CTG CTG
    66021  GCT *  7    19/21     GCT GCG TCT GCT GCT GCT GCT
    75353  TGC *  7    19/21     TGC TGC TGC TGG TGC TGT TGC
    90278  ATG *  8    22/24     ATG ATG ATA ATG ATA ATG ATG ATG
   124510  TGC *  7    19/21     TGC TGC TCC TGC TCC TGC TGC
   133986  GTG *  8    22/24     GTG ATG GTG GTG GTG TTG GTG GTG
   136587  ACA *  8    24/24     ACA ACA ACA ACA ACA ACA ACA ACA
   149622  GGC *  7    19/21     GGC GGC GGC GGC GGC GTC GAC
   175438  ACT *  7    19/21     ACT ACT ACT ACT ACT ACT GCA
   183228  GCA *  8    22/24     GCA GCA GCA GCA ACA GCA ACA GCA
   183347  TGA * 15    42/45     TGA TGA CGA TGA TGA TGC TGA TGA TGA CGA TGA TGA TGA TGA TGA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       191851 
 Total number of repeats detected..............       21 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      2       0       2       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGA      1       0       0       1       0       0       0       0       0       0       0       0       0   
  TGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   1 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    1 
   0 AAC +    1 ACA +   0 CAA +   0 GTT +   2 TTG +    0 TGT      =    3 
   1 ATG +    1 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    2 
   0 AGT +    0 GTA +   1 TAG +   1 ACT +   0 CTA +    0 TAC      =    2 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   2 AGC +    2 GCA +   1 CAG +   1 GCT +   1 CTG +    2 TGC      =    9 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   1 CAC +   0 GGT +   1 GTG +    0 TGG      =    2 
   1 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7301458|gb|AE003756.1|AE003756 Drosophila melanogaster genomic scaffold 142000013386035 section 81 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    33758  CAG *  7    19/21     CAG CAG CAG CAG TAG GAG CAG
    93670  ATC *  8    22/24     ATC ATC ACC ATC GTC ATC ATC ATC
    94533  TGT * 11    30/33     TGT TGT TGT TGT TGT TGT TGC TGC TGT TGT TGC
   117715  CCA *  7    19/21     CCA CCA CGA CCA CCA CCA CCG
   117738  TCC *  9    26/27     TCC TCC TCC TCC TCC TCC TCC TCC TCG
   134096  CTG *  8    22/24     CTG CTG CCG TTG CTG CTG CTG CTG
   141432  CTG *  8    22/24     CTG TTG CTG CTG CTG CTG CTG ATG
   153480  AAT *  7    19/21     AAT AAT AAT AAT AAT AAT GAA
   161021  CAA * 10    27/30     CAA CAA TAA CAA CTA CAA CAA CAA CAA CAT
   161520  GCA *  8    22/24     GCA GCA GCG GCG GCA GCA GCA GCA
   172333  AGC *  7    19/21     AGC AGC AAC AAC AGC AGC AGC
   172389  CAG *  7    19/21     CAG CAG CAA CAG CAG CAG CAA
   189760  GCA *  7    19/21     GCA ACA GCA ACA GCA GCA GCA
   189917  CAA *  7    19/21     CAA CAG CAA CAA CAA TAA CAA
   190107  CAA *  7    19/21     CAA CAA CAA CAA CAA CAA AGA
   190536  TTG *  7    19/21     TTG TTG CTT TTG TTG TTG TTG
   194179  ATA *  7    19/21     ATA ATA ATA ATA ATA ATG ATG
   195216  CAG *  7    19/21     CAG CAG CGG CGG CAG CAG CAG
   227625  AGC *  8    22/24     AGC AGC AAC AGC AAC AGC AGC AGC
   242046  GTT *  8    22/24     GTT GTT GTT GTT GTG GTT ATT GTT
   250565  AGC *  7    19/21     AGC AAC AGC AAC AGC AGC AGC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       256242 
 Total number of repeats detected..............       21 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      3       3       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAA      3       2       1       0       0       0       0       0       0       0       0       0       0   
  CAG      3       3       0       0       0       0       0       0       0       0       0       0       0   
  CTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    1 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   3 CAA +   1 GTT +   1 TTG +    1 TGT      =    6 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   1 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    1 TCC      =    1 
   3 AGC +    2 GCA +   3 CAG +   0 GCT +   2 CTG +    0 TGC      =   10 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    1 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7301445|gb|AE003755.1|AE003755 Drosophila melanogaster genomic scaffold 142000013386035 section 80 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

   118582  AGC *  8    22/24     AGC AGC AGT AGC ACC AGC AGC AGC
   118720  CAG *  7    19/21     CAG CAG CAA CAA CAG CAG CAG
   120911  CAG *  7    19/21     CAG CGG CAG CAG CAG CAG CAA
   143494  TAA *  7    19/21     TAA TAA TAA TAA TAA TGG TAA
   148900  TAC *  7    19/21     TAC TAC TAC TAC TAC TAC GAA
   213385  ATC *  8    22/24     ATC ATC ATC ACA ATC ATC ATC ATC
   213409  GTC *  9    26/27     GTC GCC GTC GTC GTC GTC GTC GTC GTC
   219999  AGC *  7    19/21     AGC AGC AGC AGA AGC AGT AGC
   223939  GAT *  7    19/21     GAT GAT AAT GAT GAT GAT GAC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       226763 
 Total number of repeats detected..............       9 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      2       2       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   1 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    0 
   0 ATG +    0 TGA +   1 GAT +   0 CAT +   1 ATC +    0 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    1 TAC      =    1 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   2 AGC +    0 GCA +   2 CAG +   0 GCT +   0 CTG +    0 TGC      =    4 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   1 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7301396|gb|AE003754.1|AE003754 Drosophila melanogaster genomic scaffold 142000013386035 section 79 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     1858  GCA *  7    19/21     GCA GCG GCA GCA GCA GCA GGA
     6592  GGC *  7    20/21     GGC GGC GGC GGC GGT GGC GGC
     6619  GGA *  8    22/24     GGA GGA AGA GGA GGT GGA GGA GGA
     6660  GCA * 10    27/30     GCA GCA GCC TCA GCA GCA GCA GCA GCA ACA
    46564  AGC *  7    19/21     AGC AGC AGC AGC AGT AGC AGT
    68173  GCT *  8    22/24     GCT GCT GCT GCT GCT GCG GCT TCT
    68226  TGC *  8    22/24     TGC TGC TGC CGC TGT TGC TGC TGC
    72138  CAG *  7    19/21     CAG CTG CAC CAG CAG CAG CAG
    91119  CAC *  8    22/24     CAC CAC CAT CAC CAC CAC CAC CAT
    92661  GAG *  7    20/21     GAG GAA GAG GAG GAG GAG GAG
    92841  GAG *  7    19/21     GAG GAG GAG GAG CAG GAG GAA
   104233  ACT *  9    25/27     ACT TCT ACT ACT ACT ACT ACT ACT ACG
   108390  TGC *  8    22/24     TGC TGC TGC TGC TTC TGC TGC TGA
   118141  TGG *  8    22/24     TGG TTG TGG TAG TGG TGG TGG TGG
   118312  ACG *  7    20/21     ACG ACG ACG ACG ATG ACG ACG
   123196  GAG *  7    19/21     GAG GAG CAG GAG GAC GAG GAG
   128866  TGC *  7    19/21     TGC TGC TGC TGC TGC TAC TGT
   129116  CTG *  9    26/27     CTG CTG CTG CTG CTG TTG CTG CTG CTG
   134421  CAG *  7    19/21     CAG CAG CAG CAG CAA CAG CAA
   141070  GAT *  7    19/21     GAT GAT GAT GGT GAT GGT GAT
   141746  GCA *  7    20/21     GCA GCA GCC GCA GCA GCA GCA
   144284  GCA * 11    30/33     GCA GCA GCG GCA GGA GCA GCA GCA GCA GCA ACA
   158424  GTT *  7    19/21     GTT GTT GTT ATT GCT GTT GTT
   160661  AAC *  7    19/21     AAC AAC AAC AAA AAC AAC AGC
   174686  TGC *  8    22/24     TGC TGC TGC CGC TGT TGC TGC TGC
   186259  TGC *  8    22/24     TGC TGC TGC TGC TGC TGC TGC CAC
   195828  TGC *  9    25/27     TGC TGT TGC CGC TGC TGC TGC TGC TGC
   197523  AAC *  7    19/21     AAC AGC AGC AAC AAC AAC AAC
   197745  GCA *  7    19/21     GCA ACA GCA ACA GCA GCA GCA
   207615  GCA *  7    19/21     GCA GCA GGA GCA GCA GCA TCA
   208184  CTG *  7    19/21     CTG TTG CTG TTG CTG CTG CTG
   208386  TGC *  7    19/21     TGC TGC AGA TGC TGC TGC TGC
   208419  TGC *  7    20/21     TGC TGC TGC TGC TGC TGC TGG
   214205  ACG *  7    19/21     ACG ATG ACG ACG ACG ACG ATG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       221822 
 Total number of repeats detected..............       34 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      8       8       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAG      3       3       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      6       4       2       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   2 AAC +    0 ACA +   0 CAA +   1 GTT +   0 TTG +    0 TGT      =    3 
   0 ATG +    0 TGA +   1 GAT +   0 CAT +   0 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   1 ACT +   0 CTA +    0 TAC      =    1 
   0 AGG +    1 GGA +   3 GAG +   0 CCT +   0 CTC +    0 TCC      =    4 
   1 AGC +    6 GCA +   2 CAG +   1 GCT +   2 CTG +    8 TGC      =   20 
   2 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    2 
   0 ACC +    0 CCA +   1 CAC +   0 GGT +   0 GTG +    1 TGG      =    2 
   1 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7301360|gb|AE003753.1|AE003753 Drosophila melanogaster genomic scaffold 142000013386035 section 78 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     1295  CAG *  7    19/21     CAG CAG CAG CAG CAG CAA CAA
    43429  ATG *  7    19/21     ATG ATG ATG ATG GTG ATG ATA
    77758  CTG *  9    25/27     CTG CTG CTG CTG CTG CTT CTG CTG TTG
   154631  GCA *  8    23/24     GCA GCA GCA GCA GCA GCA GCA ACA
   172074  AGC *  7    19/21     AGC AGC AAC AAC AGC AGC AGC
   172130  CAG *  7    19/21     CAG CAG CAA CAG CAG CAG CAA
   195174  CGC * 10    27/30     CGC CGC TGC TGC CGC CGC CGC CGC CGC TGC
   202612  GCT *  8    22/24     GCT GCT GCT GCT ACT GCT GCT GTT
   220649  TTG *  7    19/21     TTG CTG TTG TTG TTG TTG TCG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       226342 
 Total number of repeats detected..............       9 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CGC      1       0       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   1 TTG +    0 TGT      =    1 
   1 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   1 AGC +    1 GCA +   2 CAG +   1 GCT +   1 CTG +    0 TGC      =    6 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    1 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7301339|gb|AE003752.1|AE003752 Drosophila melanogaster genomic scaffold 142000013386035 section 77 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    13853  GCA * 11    30/33     GCA GCA GCA GCA GCA AAA GCA GCA GCA GCA ACA
    27402  TTG *  7    20/21     TTG TTG TTG TTG TCG TTG TTG
    36198  CAA *  7    19/21     CAA CAA GAA CAA CAA CAA TAA
    45671  CTC *  8    22/24     CTC CTC CTC CTC CTC CTC CTC TGC
    83938  GGC *  8    22/24     GGC GGC GGC GGC AGC AGC GGC GGC
    97479  TTA *  7    19/21     TTA TTA TTG TTA TTA TTG TTA
   128061  ACT *  8    22/24     ACT ACT ACT ATT ACT ACA ACT ACT
   164617  CAG *  8    22/24     CAG CAG CAG CAA CAG CAG CAG CAT
   164860  GCC *  7    19/21     GCC GCT GCT GCC GCC GCC GCC
   177975  CAG *  8    22/24     CAG CAG CAG CAG CAC GAG CAG CAG
   178002  CAG *  7    19/21     CAG GAG CAG CAG CAG CAA CAG
   178024  AGC * 10    27/30     AGC AGC AGC AGC AGC AGC AGC AGC ACG AGG
   183731  CAG *  8    22/24     CAG GAA CAG CAG CAG CAG CAG CAG
   217942  CTG *  7    19/21     CTG CTG CTG CTG CTG ATG ATG
   218330  TGC *  9    25/27     TGC GGC TGC TGC TGC TGT TGC TGC TGC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       225478 
 Total number of repeats detected..............       15 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AGC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  ACT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      4       4       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   1 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   1 CAA +   0 GTT +   1 TTG +    0 TGT      =    2 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   1 ACT +   0 CTA +    0 TAC      =    1 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   1 CTC +    0 TCC      =    1 
   1 AGC +    1 GCA +   4 CAG +   0 GCT +   1 CTG +    1 TGC      =    8 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   1 GGC +    0 GCG +   0 CGG +   1 GCC +   0 CCG +    0 CGC      =    2 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7301280|gb|AE003751.1|AE003751 Drosophila melanogaster genomic scaffold 142000013386035 section 76 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     1209  CTG *  7    19/21     CTG CTT CTG CTC CTG CTG CTG
     2130  CCA *  7    19/21     CCA CCA CCA CCA CCA CCA TCC
    23118  GCT * 10    27/30     GCT GCT GCT GCT GGT GCT GCT GCG GCT GAT
    24466  GGA *  8    22/24     GGA GGA GGA GGA GGA GGT GGT GGA
    87247  AGC *  7    19/21     AGC ATC AGC AGC AGC AAC AGC
   186219  TGT * 10    27/30     TGT TGT TTT TGT TCT TGT TGT TGT TGT CGT
   228651  TGC * 10    27/30     TGC TGC TGC TGC TGC TGC TAC TAC TGC TGT
   231612  GCT *  7    19/21     GCT TCT ACT GCT GCT GCT GCT
   232812  GTG *  7    19/21     GTG GTG GTG GTT GTG GTT GTG
   232983  GTG *  7    19/21     GTG GTG GTG GTT GTG GTT GTG
   233317  GTG *  7    19/21     GTG GTG GTG GTT GTG GTT GTG
   233416  GTG *  7    19/21     GTG GTG GTG GTT GTG GTT GTG
   233502  GGT *  8    22/24     GGT GGT TGT GGT CGT GGT GGT GGT
   233656  GTG *  8    22/24     GTG GTG GTT GTG GTC GTG GTG GTG
   233800  GTT * 11    30/33     GTT GTT GTT GTT GTT GTT GTT GAT GCT GGT GTT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       269518 
 Total number of repeats detected..............       15 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GTT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GTG      5       5       0       0       0       0       0       0       0       0       0       0       0   
  GGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   1 GTT +   0 TTG +    1 TGT      =    2 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    1 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   1 AGC +    0 GCA +   0 CAG +   2 GCT +   1 CTG +    1 TGC      =    5 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    1 CCA +   0 CAC +   1 GGT +   5 GTG +    0 TGG      =    7 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7301241|gb|AE003750.1|AE003750 Drosophila melanogaster genomic scaffold 142000013386035 section 75 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     1008  TGC *  7    19/21     TGC TGC TGC TGT TGC TGG TGC
     5935  GTC *  7    19/21     GTC GTG GAC GTC GTC GTC GTC
     5966  CTC *  8    22/24     CTC CTC CAC CTC CTG CTC CTC CTC
    32068  CTG *  8    22/24     CTG CTG CTG CTG CTG CTG CTT CTA
    33321  GAG * 12    33/36     GAG GAG GAG GAG GAG GAA GAG GAG GAG GAG GAA GAA
    45111  CAG *  7    19/21     CAG CAG CAT CAG CAG CAG CAA
    46479  GCA *  9    25/27     GCA AGA GCA GCA GCA GCA GCA GCA GCA
    46531  CAT * 10    27/30     CAT CAT CAT CAT CAT CAT CAT CTT CGT CGT
    67048  GTC *  8    22/24     GTC GTC GTC GTC GTC GTC GTC ATG
    71814  GCA *  7    19/21     GCA GCA ACA GCA ACA GCA GCA
    71908  CAT *  8    22/24     CAT CAT TAT CAT CAT CAT CAT CCT
    82463  CAC *  7    19/21     CAC CAC GAG CAC CAC CAC CAC
    90511  TGT *  8    22/24     TGT AGT TGT TGT TGT TGT TGA TGT
   143246  AGC * 11    31/33     AGC AGC AGC AGC AGC AGC AGG AGC AGC ACC AGC
   144411  CCA *  7    19/21     CCA CCA CCA CCA TCA CCA CCG
   194597  GCA *  8    22/24     GCA GCA TCA GCA GCA GCA TCA GCA
   194663  GCA *  7    19/21     GCA CCA GCA GCA GCA GCA ACA
   222356  GCT *  7    20/21     GCT GCT GTT GCT GCT GCT GCT
   223846  AGC *  7    19/21     AGC AGC GGC AGC AGC AGG AGC
   225416  GCA *  8    22/24     GCA TCA GCA GCA GCA GCA GCA GAA
   225451  AGC * 12    33/36     AGC AGC AGC AGG AGC AGC AGC AGC AGC AGC ATC CGC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       227398 
 Total number of repeats detected..............       21 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AGC      3       1       2       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GTC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCA      5       5       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    1 TGT      =    1 
   0 ATG +    0 TGA +   0 GAT +   2 CAT +   0 ATC +    0 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   1 GAG +   0 CCT +   1 CTC +    0 TCC      =    2 
   3 AGC +    5 GCA +   1 CAG +   1 GCT +   1 CTG +    1 TGC      =   12 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   2 GTC +    0 TCG      =    2 
   0 ACC +    1 CCA +   1 CAC +   0 GGT +   0 GTG +    0 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7301193|gb|AE003749.1|AE003749 Drosophila melanogaster genomic scaffold 142000013386035 section 74 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     6539  AGC *  7    19/21     AGC AAC AGC AGC AGC ATC AGC
     6595  CAG *  7    20/21     CAG CAG CAG CAA CAG CAG CAG
     6654  GCA *  7    19/21     GCA GCA GCA ACA CCA GCA GCA
     6744  GCA * 10    28/30     GCA GCA GCT GCA ACA GCA GCA GCA GCA GCA
    16012  CCA *  8    22/24     CCA CCA CCG CCA TCA CCA CCA CCA
    16041  ACC *  7    20/21     ACC ACC ACC ACC ACC ACC ACA
    16176  CAG *  7    19/21     CAG TAG CAG CAA CAG CAG CAG
    23201  CGG *  8    22/24     CGG CGG CGG CGG CGG CGG AGG AGG
    32039  TGA *  7    19/21     TGA TGA TGA TGA TGC TGA TGC
    51616  GCT *  9    25/27     GCT GCT GCT GCT GCT ACT GCT GCT GCG
    57957  TCT *  7    19/21     TCT TCT GCT TCT TCT TCT GCT
    59525  AGC *  8    22/24     AGC AGC AGC AAC AGC AGC AGC GGC
    86031  CAG *  7    19/21     CAG CAG CAA CAG CAG CAG CAA
    86053  AGC * 14    38/42     AGC AAC AGC AGC AGC AGC AGC AGC AGC AGC AAC AAC AGC AAC
    90189  CTG *  8    22/24     CTG CTG CGG ATG CTG CTG CTG CTG
   103433  CCT *  7    19/21     CCT CCT CCT CCT CCT CTT CGT
   111710  GGC *  7    19/21     GGC AGC GGT GGC GGC GGC GGC
   130139  AAT * 10    27/30     AAT AAT AAT AAT AAT AAT AAT AAT AAA ATA
   136656  AAT *  8    22/24     AAT AAT AAT AAT AAT AAT AAC AAG
   141225  TAA *  7    19/21     TAA TAC TGA TAA TAA TAA TAA
   181521  TCA * 10    27/30     TCA TCA TCA TCA TCA TCA TCA TCG TCA TTC
   188167  TGC *  7    19/21     TGC TAG TGC TGC TGC TGC TGC
   197790  CAG *  8    22/24     CAG CAG CAG AAG CTG CAG CAG CAG
   200400  GAT *  8    22/24     GAT TGT GAT GAT GAT GAT GAT GAT
   200743  GCA * 12    34/36     GCA GCA GCG GCA GCA GCA GCA GCA GCA GCA GCA TCA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       228472 
 Total number of repeats detected..............       25 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  AGC      3       2       0       1       0       0       0       0       0       0       0       0       0   
  ACC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      3       1       2       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      4       4       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   2 AAT +    0 ATA +   1 TAA +   0 ATT +   0 TTA +    0 TAT      =    3 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    1 TCT      =    1 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    0 
   0 ATG +    1 TGA +   1 GAT +   0 CAT +   0 ATC +    1 TCA      =    3 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   1 CCT +   0 CTC +    0 TCC      =    1 
   3 AGC +    3 GCA +   4 CAG +   1 GCT +   1 CTG +    1 TGC      =   13 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   1 ACC +    1 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    2 
   1 GGC +    0 GCG +   1 CGG +   0 GCC +   0 CCG +    0 CGC      =    2 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7301169|gb|AE003748.1|AE003748 Drosophila melanogaster genomic scaffold 142000013386035 section 73 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     9716  AAT *  7    19/21     AAT AAT AAT CAT AAT AAT AAC
    11504  TTG *  7    19/21     TTG TTT TAG TTG TTG TTG TTG
    66898  ACA *  7    19/21     ACA ACA ACA ACA GCA ACT ACA
   108792  TGC *  8    22/24     TGC TGC TGC TGC TGC TGC TGA AGC
   128653  GCA *  7    19/21     GCA GCA GCA CCA GCA GCA ACA
   131362  CTT * 11    30/33     CTT CTT CTC CTT CTT TTT CTT CTT CTT CTC CTT
   137418  GCA *  7    19/21     GCA TCA GCA TCA GCA GCA GCA
   139827  TTG *  7    20/21     TTG TTG TTG TTG TTG TTG TTA
   140951  ATG *  8    22/24     ATG ATG ATC ATA ATG ATG ATG ATG
   148510  GTA * 12    34/36     GTA GTA GTA GTA GTA GTA GTA GTA GTA GTA GTA GCC
   151466  GCA *  7    19/21     GCA GCA GCA GCA AAA GCA GCA
   152579  CTT *  7    19/21     CTT CTT CTT CTT CTT CTG CGT
   153827  CAA *  7    19/21     CAA CAA CAG CAA CAA CAG CAA
   162711  CAG * 14    38/42     CAG CAG CAG CAG CAG CAG CAG AAG CAG CAA CAG CAA CAG CAA
   166264  GCA *  8    22/24     GCA GCA GCA TCA GCA GCA GCA GAA
   172417  TCA *  7    19/21     TCA TCA TCA TCA TCA TCT TCC
   184832  GCT *  8    22/24     GCT GCT GCT GTT GTT GCT GCT GCT
   191064  GGC *  7    19/21     GGC GGC GGC GGT GGC GGC TGC
   203489  CAG *  7    19/21     CAG CAG CAG CAG CAG CCG CCG
   213372  ATG *  7    19/21     ATG ATG AGC ATG ATG ATG ATG
   229487  CAA *  8    23/24     CAA CAA CAC CAA CAA CAA CAA CAA
   230587  AAT * 12    34/36     AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT ATT GAT
   240350  TAC * 11    31/33     TAC TAC TAC TTC TAC TAC TAC TAC TAC TAC AAC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       256636 
 Total number of repeats detected..............       23 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  ATG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      4       4       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAG      2       1       0       1       0       0       0       0       0       0       0       0       0   
  CTT      2       1       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   2 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   2 CTT +   0 TTC +    0 TCT      =    2 
   0 AAC +    1 ACA +   2 CAA +   0 GTT +   2 TTG +    0 TGT      =    5 
   2 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    1 TCA      =    3 
   0 AGT +    1 GTA +   0 TAG +   0 ACT +   0 CTA +    1 TAC      =    2 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    4 GCA +   2 CAG +   1 GCT +   0 CTG +    1 TGC      =    8 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   1 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7301134|gb|AE003747.1|AE003747 Drosophila melanogaster genomic scaffold 142000013386035 section 72 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    14405  GAT *  8    22/24     GAT GAT GAT GAT AAT GAT GAT GTT
    34576  CCT * 10    28/30     CCT CCT CCT CCT CCT CCT CCT CCT CCA CCG
    35388  CAT *  8    22/24     CAT CCT CAA CAT CAT CAT CAT CAT
    64786  AGC *  8    22/24     AGC AAT AGC AGC AGC AGC AGC AGC
    76764  GAT * 11    30/33     GAT GAT GAT GAT GAC GAC GAT GAT GAT GAT GAG
    76926  GAG *  7    19/21     GAG GAG GAA GAG GAG GAG GAA
    77613  GAG *  7    19/21     GAG GAG GAG GAG GAA GAG GAA
    77845  GAC *  7    20/21     GAC GAC GAT GAC GAC GAC GAC
   101619  GCA *  7    19/21     GCA GCA GCG GCG GCA GCA GCA
   122651  GAG *  9    25/27     GAG GAG GAG GAG GAG GAG GAG GAG CCG
   141797  CCA *  9    25/27     CCA CCA CCA CCT CCT CCA CCA CCA CCA
   152340  CTG *  7    20/21     CTG ATG CTG CTG CTG CTG CTG
   202947  TGC *  7    19/21     TGC TGC TGA TGT TGC TGC TGC
   203173  TGC * 10    28/30     TGC TGC TGC TGC TGT TGC TGC TGC TGT TGC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       204469 
 Total number of repeats detected..............       14 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GAT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GAG      3       3       0       0       0       0       0       0       0       0       0       0       0   
  GAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCT      1       0       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    0 
   0 ATG +    0 TGA +   2 GAT +   1 CAT +   0 ATC +    0 TCA      =    3 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   3 GAG +   1 CCT +   0 CTC +    0 TCC      =    4 
   1 AGC +    1 GCA +   0 CAG +   0 GCT +   1 CTG +    2 TGC      =    5 
   0 ACG +    0 CGA +   1 GAC +   0 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    1 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7301086|gb|AE003746.1|AE003746 Drosophila melanogaster genomic scaffold 142000013386035 section 71 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     3181  AGC * 10    28/30     AGC ATC AGC AGC AGC AGC AGC ACC AGC AGC
    48988  TCA * 11    31/33     TCA TCA TCA TCA TCA ACA TCA TCA TCA TCA TCC
    52111  AAC * 12    34/36     AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AGG
    65328  GTT * 10    27/30     GTT ATC GTT GTT GTT GTT GTT GTT GTT TTT
    93051  TCC *  7    19/21     TCC TTG TCC TCC TCC TCC TCC
    97639  GGA *  8    22/24     GGA GGA GGA GGA GGA GGA GGA GTG
   164957  ATC *  7    19/21     ATC CTC ATC ATC ATC GTC ATC
   175476  CGT *  7    19/21     CGT CGC CGT CGT CGT CGT CAT
   178711  TCA *  7    20/21     TCA TCA TCA TCA TCA TCA TCG
   182961  ATC *  7    20/21     ATC ATA ATC ATC ATC ATC ATC
   190216  GAT * 11    30/33     GAT GAT GAT GAT GGT GGT GAT GAT GAT GAT AAT
   190801  CAA * 12    33/36     CAA GAA CCA CAA CAA CAA CAA CAA CAA CAA CAA CGA
   193914  GGC *  7    19/21     GGC GGT GGC GGC GGC GGC GGT
   202495  TGT *  8    22/24     TGT TGT TGT TGT TGT ACT TGT TGT
   209095  AAC *  8    22/24     AAC AAC AAC AAC AAC ACC AAT AAC
   215833  GCA * 12    33/36     GCA GCA GCA GCA GCA ACA ACA GCA GCA GCA GCA ACA
   215870  CAG *  7    19/21     CAG CAG CAG CAG CAG CAA CAA
   216067  GCA *  7    19/21     GCA ACA GCA GCA GCA GCA GCT
   216666  AGC *  7    19/21     AGC GGC CGC AGC AGC AGC AGC
   216924  GCA *  7    19/21     GCA GCG GCT GCA GCA GCA GCA
   217679  AGA *  7    19/21     AGA AGG CGA AGA AGA AGA AGA
   221012  AAG *  8    22/24     AAG AAG AAG AAG AAG ATG GAG AAG
   222983  GCA *  7    19/21     GCA GCA GGA GCA GCA GCA GCT
   223568  CAG *  7    19/21     CAG CAG CAG CAG CAG CAA CCG
   223901  GCC *  7    19/21     GCC GCA GCT GCC GCC GCC GCC
   224580  AGC *  8    22/24     AGC AGC AGC CGC AGC AGC AGC AGT
   224632  GCA *  7    19/21     GCA GCA GCA GCA GCA GCA TGA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       226318 
 Total number of repeats detected..............       27 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AAC      2       1       1       0       0       0       0       0       0       0       0       0       0   
  ATC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  AGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      3       2       1       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCA      2       1       1       0       0       0       0       0       0       0       0       0       0   
  TCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GTT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      5       4       1       0       0       0       0       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CAG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   1 AAG +    1 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    2 
   2 AAC +    0 ACA +   1 CAA +   1 GTT +   0 TTG +    1 TGT      =    5 
   0 ATG +    0 TGA +   1 GAT +   0 CAT +   2 ATC +    2 TCA      =    5 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    1 GGA +   0 GAG +   0 CCT +   0 CTC +    1 TCC      =    2 
   3 AGC +    5 GCA +   2 CAG +   0 GCT +   0 CTG +    0 TGC      =   10 
   0 ACG +    0 CGA +   0 GAC +   1 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   1 GGC +    0 GCG +   0 CGG +   1 GCC +   0 CCG +    0 CGC      =    2 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7301057|gb|AE003745.1|AE003745 Drosophila melanogaster genomic scaffold 142000013386035 section 70 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    12865  CTG *  8    22/24     CTG CTG CTG CTC CTG CTG TTG CTG
    21626  TGT * 10    27/30     TGT TGT TGT TGT TGT TGT TGT TGT TGC CGG
    42129  AAT *  7    19/21     AAT AAT AAT AAT AAA AAA AAT
    61897  TAT *  7    19/21     TAT TAC TAT TAT TAT TAT TTT
    67619  CAT *  7    19/21     CAT GAT CAT CAT CTT CAT CAT
    70161  AGC * 12    33/36     AGC AGC AGC AGC AGC AGC AGC AAC AGC AAC AAC AGC
    70197  AAC *  8    22/24     AAC AAC AGC AAC AAC AGC AAC AAC
    77494  ATC *  8    23/24     ATC ATC ATC ATC ATC ATC AAC ATC
    82821  ACA *  7    19/21     ACA ACA ACA AGT ACA ACA ACA
    82869  AAC *  8    22/24     AAC AAC AAT AAC AAA AAC AAC AAC
    83184  AAC *  8    22/24     AAC AAC AAC AAC AAC AAC ATC AGC
    83706  GTT *  7    19/21     GTT GTT GTT GTT GTT GCT GCT
    91466  TGC * 14    38/42     TGC TGC TGC TGT TGC TGC TGC TGC TGC TGC TGA TAC TGC TGT
    91772  ATG *  7    19/21     ATG ACG ATG ATG ATG ATT ATG
    95506  TGC *  8    22/24     TGC TGC TGC TGC TGT TGC TGC TGG
   101335  TGC *  8    22/24     TGC TGC TGC TGT GGC TGC TGC TGC
   103213  GGA *  8    22/24     GGA GGC GGA GGA GGA GGA GGA GAA
   108947  AAC *  8    23/24     AAC AAC AAC AAC AAC AAC AAC AGC
   112086  TCA *  9    26/27     TCA TCA GCA TCA TCA TCA TCA TCA TCA
   116706  TGC *  7    19/21     TGC TGT TGT TGC TGC TGC TGC
   116800  GCT *  7    19/21     GCT GCT GCT GTT GCT GCT GCA
   116898  TGC * 10    27/30     TGC TGG TGT TGC TGC TGC TGC TGC TGC TGA
   117075  TGC *  7    19/21     TGC TGC TGC TGA TGT TGC TGC
   159860  AGC *  7    19/21     AGC AGC AGC GCC AGC AGC AGC
   162009  GCT *  7    19/21     GCT GCT GCT GCT GCT GCG ACT
   162539  CAG *  7    19/21     CAG GAG CAG CAA CAG CAG CAG
   177067  GCA *  7    19/21     GCA GCA GCA ACT GCA GCA GCA
   177095  CAG *  7    19/21     CAG CAG CAG CAG CAA CAG CTG
   197049  CTG *  7    19/21     CTG CTG CTG CTG CAT CTG CTG
   206097  AGC *  8    23/24     AGC AAC AGC AGC AGC AGC AGC AGC
   215515  AAC *  7    20/21     AAC AAC AAA AAC AAC AAC AAC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       219341 
 Total number of repeats detected..............       31 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AAC      5       5       0       0       0       0       0       0       0       0       0       0       0   
  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      3       2       1       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGC      6       4       1       1       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    1 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   5 AAC +    1 ACA +   0 CAA +   1 GTT +   0 TTG +    1 TGT      =    8 
   1 ATG +    0 TGA +   0 GAT +   1 CAT +   1 ATC +    1 TCA      =    4 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    1 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   3 AGC +    1 GCA +   2 CAG +   2 GCT +   2 CTG +    6 TGC      =   16 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7301010|gb|AE003744.1|AE003744 Drosophila melanogaster genomic scaffold 142000013386035 section 69 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     9253  GAG * 11    30/33     GAG GAG GAG GAG GAC GAG GAC GAG GAG GAG CAG
    44676  ACA *  7    20/21     ACA ACA ACA ACG ACA ACA ACA
    62626  TGC *  7    19/21     TGC TGC TGC TGT TGC TGT TGC
    77772  TGC *  7    19/21     TGC TGC TGT TGC TGT TGC TGC
   119601  AAT *  7    20/21     AAT AAT AAT AAT AAT AAT ATT
   237934  GCA *  7    19/21     GCA GCA GCA GAA GCA GGA GCA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       239327 
 Total number of repeats detected..............       6 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GAG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    1 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    1 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   1 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   0 AGC +    1 GCA +   0 CAG +   0 GCT +   0 CTG +    2 TGC      =    3 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7300988|gb|AE003743.1|AE003743 Drosophila melanogaster genomic scaffold 142000013386035 section 68 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    20905  CAG *  8    22/24     CAG CAG CAG CAG ATG CAG CAG CAG
    27888  ATA * 10    27/30     ATA GTA ATA ATA ATA ATA AAA ATA ATA ATG
    43212  AGC *  7    19/21     AGC AGC ACC AGC AGC AGC TGC
    44482  AAT *  8    24/24     AAT AAT AAT AAT AAT AAT AAT AAT
    45574  TGC * 27    75/81     TGC TGC TGC TGC TGC TGC TGC TGC TGT TGC TGA TGT TGC TGC TGT TGC TGC TGT TGC TGC TGC TGC TGC TGC TGC TGC TCC
    46273  TTG *  7    19/21     TTG TTG TTG TTT TTG TTT TTG
    52332  CAG * 12    34/36     CAG CAG CAG CAG CAG CAA CAG CAG CAG CAG GAG CAG
    61309  TGC *  9    25/27     TGC AGT TGC TGC TGC TGC TGC TGC TGC
    64700  TGC * 11    31/33     TGC TGC TGC TGC TGT TGC TGT TGC TGC TGC TGC
    64742  TGC *  8    22/24     TGC TGC TGG TGT TGC TGC TGC TGC
    65329  TGC *  7    19/21     TGC TGT TGC TGC TGC TGA TGC
    71152  GCT *  7    19/21     GCT GCC GCC GCT GCT GCT GCT
    71549  ACC *  7    19/21     ACC ACC ACC ACC ACC GCC GCC
    72929  GCA *  7    19/21     GCA GCA GCA GCG GCA TCA GCA
    80991  CAA *  7    19/21     CAA CAA CAG GAA CAA CAA CAA
    92751  GCA *  8    22/24     GCA GCA ACA GCA TCA GCA GCA GCA
   105484  ATT *  7    19/21     ATT ATT ATT ATT GTT ATT GTT
   114197  TGA *  7    19/21     TGA TGA CGA TGA TGA TGA TGG
   121616  TTG *  7    20/21     TTG TTG ATG TTG TTG TTG TTG
   125362  GCA *  7    19/21     GCA GGA GAA GCA GCA GCA GCA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       217674 
 Total number of repeats detected..............       20 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  ATT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      5       3       1       0       0       0       0       1       0       0       0       0       0   
  GCA      3       3       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      2       1       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    1 ATA +   0 TAA +   1 ATT +   0 TTA +    0 TAT      =    3 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   1 CAA +   0 GTT +   2 TTG +    0 TGT      =    3 
   0 ATG +    1 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   1 AGC +    3 GCA +   2 CAG +   1 GCT +   0 CTG +    5 TGC      =   12 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   1 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7300960|gb|AE003742.1|AE003742 Drosophila melanogaster genomic scaffold 142000013386035 section 67 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    16896  TGC *  9    25/27     TGC CGC TGC TGC TGC CGC TGC TGC TGC
    17478  TGT *  7    19/21     TGT TGT TGT TGT TTT TGT TGC
    17551  CAA * 10    28/30     CAA CAG CAA CAA CAA CAA CAA CAA CAA CAC
    33743  TTG *  7    19/21     TTG TTG GTG TTG TTG TTG TTC
    33782  GTT *  8    23/24     GTT GTT GTT GTT GTT GTT GTT GTG
    54707  CTG *  8    22/24     CTG CTG CTG CTG CTG CTG CGA CTG
   105514  CCT * 10    27/30     CCT CCT CCT CCT CCT CCT CCT CCT CCG CTG
   105641  CCT *  8    22/24     CCT CCT CCT CCT CCT CCT CCT TCG
   122873  AAC *  7    19/21     AAC AAC AAC AAG AAC AAC AAA
   141028  AGC *  7    19/21     AGC AGC AGC AGT AGC AGC AAC
   154148  TGT *  8    22/24     TGT TGT TGT TGC TGT TGT TGA TGT
   157070  TGC *  8    22/24     TGC TGC TGT TGC TGC TGC TGC TGA
   178995  TGT *  9    25/27     TGT TGT TGT TGT TGT TGC TGC TGT TGT
   180685  TGC *  7    19/21     TGC TGC TGC TGC TGT TGT TGC
   180727  TGC *  9    25/27     TGC TGC TGC TGC TGC AGC TGC TGT TGC
   180814  TGA *  9    26/27     TGA TGA TGA TGA TGA TGA TGA TGC TGA
   180920  TGC * 11    30/33     TGC TGC TGT TGC TGC TGC TGC TGC TGC TGG TGA
   186787  ACA * 10    27/30     ACA ACT ACA ACA ATA ACA ACA ACA ACA ACG
   187003  CAA *  7    19/21     CAA CAA AAA CAA CAA CAA CAC
   189198  ACA *  7    19/21     ACA ACA ACA AGA ACA ACA AAA
   193352  CAC *  8    23/24     CAC CAC CAC CAC CAC CAC CAC CAT
   194863  GAT * 12    33/36     GAT GAT CAT AAT GAT GAT GAT GAT GAT GAC GAT GAT
   195783  GAT *  8    23/24     GAT GAT GAT GAT GAT GAT GAT GAA
   209685  AAC *  7    19/21     AAC AAC AAC AGC AAT AAC AAC
   209811  GAT *  7    19/21     GAT GAT GCT GAT GAT TAT GAT
   211179  GCA * 10    28/30     GCA GCA TCC GCA GCA GCA GCA GCA GCA GCA
   212840  TGA *  8    22/24     TGA TGA TGA TGA TAA TGA TGA CGA
   223233  CAG * 10    27/30     CAG CGG CAG CAG CAG CAG CAG CAG CGG CGG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       233673 
 Total number of repeats detected..............       28 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      2       1       1       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGT      3       3       0       0       0       0       0       0       0       0       0       0       0   
  TGC      5       4       1       0       0       0       0       0       0       0       0       0       0   
  GAT      3       2       1       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CAA      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CAG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCT      2       1       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   2 AAC +    2 ACA +   2 CAA +   1 GTT +   1 TTG +    3 TGT      =   11 
   0 ATG +    2 TGA +   3 GAT +   0 CAT +   0 ATC +    0 TCA      =    5 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   2 CCT +   0 CTC +    0 TCC      =    2 
   1 AGC +    1 GCA +   1 CAG +   0 GCT +   1 CTG +    5 TGC      =    9 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   1 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7300931|gb|AE003741.1|AE003741 Drosophila melanogaster genomic scaffold 142000013386035 section 66 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    12140  AGG *  8    22/24     AGG AGG TGG AGG AGG AGG ATG AGG
    29834  TTA * 12    33/36     TTA TTA TTA TTA TTG CTA TTA TTA TTA TTA TTA TTT
    37829  CAG *  9    25/27     CAG CAG CAG GAG CAG CAG CAG CAG CAA
   110987  TGG *  7    19/21     TGG TGT TGG TGC TGG TGG TGG
   111272  GCT *  7    19/21     GCT GCT GTT GCT GCT GCA GCT
   119282  GAT *  7    19/21     GAT GAT GAT GAC TAT GAT GAT
   120888  GCT *  8    22/24     GCT GCT GCC GCT CCT GCT GCT GCT
   135880  TGC *  8    22/24     TGC TGC TGC TCC TGC TGA TGC TGC
   141902  GCT * 15    41/45     GCT GAT GCT GCT TCT GCT GCT GCT GCT GCT GTT GCT GCT GCT GTT
   146808  GTT *  7    19/21     GTT GTG GTT GTT GTT CTT GTT
   160874  GCA *  7    19/21     GCA GCA GCA GCA GCA GCA GTT
   179701  TGC *  8    22/24     TGC TGC AGC TGC TGC TGC TGC TGT
   179725  TGT *  7    19/21     TGT TGT TGT TGT TGT TGC TGC
   192276  AAT *  8    22/24     AAT CAT AAT AAT AAT AAT ATT AAT
   195865  CTG * 10    27/30     CTG CTG CTG CTG CTG CTG CTG TTG TTG TTG
   195896  TGC *  8    22/24     TGC TGC TGC TGC TGC TGC TGG TCC
   201182  GCT *  7    20/21     GCT GCT GTT GCT GCT GCT GCT
   206288  GCA *  7    19/21     GCA ACA GCA GCA GCA GCA GCG
   224446  TCG *  8    22/24     TCG GCG TCG TCG TCG TCG TCG TCT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       233313 
 Total number of repeats detected..............       19 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      3       3       0       0       0       0       0       0       0       0       0       0       0   
  TCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCT      4       3       0       1       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       0       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   1 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   1 GTT +   0 TTG +    1 TGT      =    2 
   0 ATG +    0 TGA +   1 GAT +   0 CAT +   0 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   1 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   0 AGC +    2 GCA +   1 CAG +   4 GCT +   1 CTG +    3 TGC      =   11 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    1 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    1 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7300894|gb|AE003740.1|AE003740 Drosophila melanogaster genomic scaffold 142000013386035 section 65 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     6516  CAG * 12    33/36     CAG GAG CAG CAG CAG CAG CAG CAG CAG CAT CAG CAT
    12270  CAG *  8    22/24     CAG CAG TAG CAG CAG CAG CAG CAA
    12433  CAT *  7    19/21     CAT CAT CAT CAA CAG CAT CAT
    12459  GCA * 19    52/57     GCA GCA GCA GCA GCA ACA GCA GCA GCA GCA TCA GCA GCA GCA ACT GCA ACA GCA GCA
    34742  CAG *  8    22/24     CAG CAG CAG CAG CCG CAG CAG CAA
    65875  GTA *  8    22/24     GTA GTA GTA GTA GTA GTA TTT GTA
    86711  ATA *  7    21/21     ATA ATA ATA ATA ATA ATA ATA
   139041  CAG *  7    19/21     CAG CAA CAG CAA CAG CAG CAG
   139395  GCA * 10    27/30     GCA GCA GCA GCA ACA GCA GCA GCA GCA ATA
   141275  CAG * 11    30/33     CAG CAA CAG CAG CAG CAG CAA CAG CAG CAT CAG
   141893  CAG *  7    19/21     CAG CAG TTG CAG CAG CAG CAG
   141948  GTG *  8    22/24     GTG GTG GTG GTG GCG GTG GCG GTG
   157447  GCA *  8    22/24     GCA GCA GCA GCA GCA GCA GCA AAA
   159670  GCA *  9    25/27     GCA GCA GCT GCA GCA GCA ACA GCA GCA
   159710  CAG *  9    25/27     CAG CAG CAG CAG CAG CAG CAG CGC CAG
   169487  CTG *  8    22/24     CTG CTC CTG GTG CTG CTG CTG CTG
   172030  AGC *  7    19/21     AGC AGC AGG AGC AGC AGG AGC
   179420  AGC *  7    19/21     AGC AGC AGC AGC AGC AGG AGT
   189262  TTA * 13    36/39     TTA TTA TTA TTA TTA TTT TTA TTT TTA TTA TTA TTA TTT
   219822  CAT *  8    23/24     CAT CAT CAT CAT CAT CAT CTT CAT
   224653  GCA * 11    30/33     GCA GCA ACA ACA GCA GCA GCA GCA GCA GCA ACA
   233646  CTG * 11    30/33     CTG CTG CTG ATG CTG CTG CTG CTG CGG CTG CTT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       234569 
 Total number of repeats detected..............       22 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       0       0       1       0       0       0       0       0       0       0       0       0   
  GTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      5       2       2       0       0       1       0       0       0       0       0       0       0   
  CAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAG      7       5       2       0       0       0       0       0       0       0       0       0       0   
  CTG      2       1       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    1 ATA +   0 TAA +   0 ATT +   1 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    0 
   0 ATG +    0 TGA +   0 GAT +   2 CAT +   0 ATC +    0 TCA      =    2 
   0 AGT +    1 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    1 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   2 AGC +    5 GCA +   7 CAG +   0 GCT +   2 CTG +    0 TGC      =   16 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   1 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7300851|gb|AE003739.1|AE003739 Drosophila melanogaster genomic scaffold 142000013386035 section 64 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     4395  CTG * 10    28/30     CTG TTG CTG CTG CTG CTG CTG CTG CTG CAG
     4710  CTG *  7    19/21     CTG TTG CTG CTG CTG CTG TTG
     5152  TGC *  7    19/21     TGC TGC TGC TGT TGT TGC TGC
    36585  CGC *  7    19/21     CGC CGC CAC CGC CGC CGC CAC
    36995  CAG *  7    20/21     CAG CAG CAG CAG CAG CAG CAA
    59944  CAA *  7    19/21     CAA CAG CTA CAA CAA CAA CAA
    59978  AAC *  7    19/21     AAC CAC AAC AAC AAC AAC CAC
    60805  GCA *  7    19/21     GCA GCA GTA GCA GCA GTA GCA
    60861  AGC *  7    20/21     AGC AGC AGC AGC AGC AGC GGC
    62615  AAT *  9    25/27     AAT AAT AGT AAT AAT AAT AAT AAT GAT
   131121  GAT * 10    28/30     GAT CAT GAT CAT GAT GAT GAT GAT GAT GAT
   157485  GCA *  8    22/24     GCA GCA ACT GCA GCA GCA GCA GCA
   169954  TTG *  8    22/24     TTG TAG TTG TTG TTG TTG TTG TGG
   180158  GCA *  8    22/24     GCA GCA GCA GCA GCA GCA GCA ACT
   180890  CAG *  7    19/21     CAG CAG CAA CAT CAG CAG CAG
   180917  CAG *  9    25/27     CAG CAG CAG CAG CAA CAG CAG CAG CAA
   183422  CAG *  7    19/21     CAG CAG AAG GAG CAG CAG CAG
   195354  GGT *  8    22/24     GGT GGT GGT GGT GGT GGA GGT GGC
   201297  TGC * 12    33/36     TGC TGC TGC TGC TGC TGC TGC TGC TGC TGA TGA TGA
   201333  TGA *  7    19/21     TGA TGA TGA TGA TGA TGG TGG
   211154  TTG *  8    22/24     TTG TTG TTG CTG TTG TTG TTG TTC
   221889  TCA *  7    19/21     TCA TCA TCA TCA TCA GCA GCA
   221918  ATT * 14    38/42     ATT ATT ATT ATT CTT ATT ATT CTT ATT ATT ATT ATT ATT CTG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       223815 
 Total number of repeats detected..............       23 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATT      1       0       0       1       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       1       1       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      3       3       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      4       4       0       0       0       0       0       0       0       0       0       0       0   
  CTG      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   1 ATT +   0 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    0 ACA +   1 CAA +   0 GTT +   2 TTG +    0 TGT      =    4 
   0 ATG +    1 TGA +   1 GAT +   0 CAT +   0 ATC +    1 TCA      =    3 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   1 AGC +    3 GCA +   4 CAG +   0 GCT +   2 CTG +    2 TGC      =   12 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   1 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    1 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7300816|gb|AE003738.1|AE003738 Drosophila melanogaster genomic scaffold 142000013386035 section 63 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     6870  CTG * 11    30/33     CTG TTG CTG CTG CTG CTG CTG CTG TTG CTG TTG
    20508  AGC * 21    57/63     AGC AGC AGC AGC AAC AGC AGC AGC AGC AAC AGC AGT AGC AGC AAC AGC AGC AGC AGC AGA AGG
    24722  TCA *  9    25/27     TCA TAA TCA TCA TCA TCA TCA TCA TTA
    29494  TGT *  7    19/21     TGT TGT TGT TCT AGT TGT TGT
    35663  GAT *  7    19/21     GAT GAT GAT GAT GAT GAT GGC
    53934  TGC *  7    19/21     TGC TGC TGC TGT TGC TGC TGT
    53972  CTG * 10    27/30     CTG CTG TTG CTG CTT CTG CTG CTG CTG TTG
    60022  TGC * 10    27/30     TGC AGC TGA TGC TGC TGC TGC TGC TGC TGA
    71567  ATC *  7    19/21     ATC ATC ATC ATC AAC AAC ATC
    79678  GAT *  7    19/21     GAT GAT GAT GAT AAC GAT GAT
    86485  CAG * 10    27/30     CAG GAG CAG CAG CAG CAG CAG CAG AAG CTG
    88151  CAG *  8    22/24     CAG CAG CAG CAA CAG CAG CAG CAA
    89716  GCA *  7    19/21     GCA GCA GCA GCA GCA GCA GGC
    91629  GCA *  7    19/21     GCA GCT GCA GCA GCC GCA GCA
    97589  ACG *  8    22/24     ACG ATG ACG ACG ACG TCG ACG ACG
   110991  CAG *  7    19/21     CAG CAG CAG CAC CAC CAG CAG
   129340  AGC *  7    19/21     AGC AGC AGC ACC AGC AAC AGC
   129905  TGC *  7    19/21     TGC TGC TGC TGC TGC TGA TGT
   146560  CTG *  7    19/21     CTG CTG CTG CTG TGG CTG CTG
   199776  GCA *  7    19/21     GCA GCA GCA GCA GGA GCA GTA
   223962  TTC *  8    22/24     TTC TTC TTT TTC TTC TTC TTC TTT
   224084  CTT *  7    19/21     CTT CTT CTT TTT CTT CTT TTT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       226102 
 Total number of repeats detected..............       22 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      2       1       0       0       0       1       0       0       0       0       0       0       0   
  ACG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      3       2       1       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCA      3       3       0       0       0       0       0       0       0       0       0       0       0   
  CAG      3       2       1       0       0       0       0       0       0       0       0       0       0   
  CTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      3       1       2       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   1 CTT +   1 TTC +    0 TCT      =    2 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    1 TGT      =    1 
   0 ATG +    0 TGA +   2 GAT +   0 CAT +   1 ATC +    1 TCA      =    4 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   2 AGC +    3 GCA +   3 CAG +   0 GCT +   3 CTG +    3 TGC      =   14 
   1 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7300796|gb|AE003737.1|AE003737 Drosophila melanogaster genomic scaffold 142000013386035 section 62 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

      108  CTG *  8    22/24     CTG CTG TTG CTG CTG CTG CTG CTA
      581  AGC * 12    33/36     AGC TGC AGC AGC AGC AGC AGC AGC AGC AGC AGC AAT
    19683  AAC *  7    19/21     AAC AAC AAC TGC AAC AAC AAC
    20529  GCA *  8    22/24     GCA GCA GCT GCA GCA GCA TCA GCA
    20555  GCA *  7    19/21     GCA GCA GCA TCA GCA GCA GCG
    23578  CTG *  7    19/21     CTG CTG CTG CTT CTG CTG CAG
    23605  CTG *  9    25/27     CTG CTG CTG CTG CTG CTG CTG CGG CAG
    23745  TCG *  7    20/21     TCG TCG TCG TCG TCG TCG TCA
    23979  CTG *  7    19/21     CTG CTT TTG CTG CTG CTG CTG
    33117  CTG *  7    19/21     CTG TTG CTG CTG TTG CTG CTG
    38902  ACG *  7    19/21     ACG ACG ACG ATG GCG ACG ACG
    39037  AGC *  8    23/24     AGC AGC AGC AGC AGC AGC AGC AGT
    39095  GCT *  7    19/21     GCT CCT CCT GCT GCT GCT GCT
    40987  CAG *  8    22/24     CAG CAG CAG CAG CAG CAG CAA CAA
    41219  CAG *  8    23/24     CAG CAG CAG CAG CAG CAG CAA CAG
    49237  CAG *  8    22/24     CAG CAG CAG CAG CAG CAG CAA CAT
    50202  GGC * 10    27/30     GGC GGC TGC GGC GGC GGC GGC GGC AGC AGC
    50816  GCG * 10    27/30     GCG GCG GCG GCG GCG GCG GCG GCG GCA ATG
    52115  CAA * 10    27/30     CAA CAA CAG CAA CTA CAA CAA CAA CAA TAA
    52163  AAC *  9    25/27     AAC AAC AAC AAC AAC AAC AGT AAC AAC
    56152  CAA * 11    30/33     CAA CAA CAA CAA CAA CAA CAG CAG CAA CCA CAA
    56601  ACA *  7    19/21     ACA ACA AGA ACA ACA ACA ATA
    57717  CAA * 10    28/30     CAA CAA CAA CAA CAA CAA CAA CAA TAT CAA
    57771  CAA * 13    36/39     CAA CAA CAA CAA CAA CAA CCA TAA CAA CAA CAA CAA TAA
    60145  GAA *  7    19/21     GAA GAA AAA GAA GAA GAA GAC
    83185  TCA *  7    19/21     TCA TCA TCA TCA TAA TCA TTA
   100752  TGA *  8    24/24     TGA TGA TGA TGA TGA TGA TGA TGA
   105722  TGA *  7    20/21     TGA TGA TGA TGA TGA TGA TGC
   112739  GCT *  9    25/27     GCT GCT GCT GCG GCT GCT GCT GCT GTT
   129425  CTA *  7    19/21     CTA AAA CTA CTA CTA CTA CTA
   130432  CCT *  7    19/21     CCT CCT CCA CCT CCT CCT CCG
   130560  TCC *  8    22/24     TCC ACC TCC TCC TCC TCG TCC TCC
   141205  GCT *  8    22/24     GCT GCT GCT GCT GTT GCT CCT GCT
   151436  AGC * 10    27/30     AGC AGC AGT AGC AGT AGC AGC AGC AGC AGT
   151686  AGC *  8    22/24     AGC AGC AGG AGC AGG AGC AGC AGC
   169596  AGC *  9    25/27     AGC AAC AGC AGC AGC AGC AGA AGC AGC
   170037  AGC *  7    19/21     AGC AGC AAC ATC AGC AGC AGC
   170994  CAG * 15    41/45     CAG GAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAC CAT CAT
   179486  AAC *  7    19/21     AAC AGC AAC AAC AAC AAC TAC
   179627  GTT *  7    19/21     GTT GCT GTT GTT GTT GTT GTC
   182914  TGA *  7    20/21     TGA TGA CGA TGA TGA TGA TGA
   183897  AGC *  7    19/21     AGC AGC AGC AAC AGC AAC AGC
   184916  TGT * 14    38/42     TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGC TGC TGC TTT
   190266  GCA *  8    22/24     GCA GGA GCA GCA GCA GCA GCA GCT
   196316  CTG *  8    23/24     CTG CTG CTG CTG CTG TTG CTG CTG
   196373  CTG *  8    22/24     CTG TTG CTG CTG CTG CTG CTG TTG
   197016  TTG *  7    19/21     TTG TTG TTG TTG TTT TTG GTG
   198321  AGC * 10    28/30     AGC AGC AGC AGC AGC AGC AGC AGC ATC AAC
   203749  CAG *  7    19/21     CAG CAG CGG CAG CAG CAG CCG
   206135  CTG *  7    19/21     CTG CTG TTC CTG CTG CTG CTG
   210944  TTA *  8    22/24     TTA TCA TTA TTG TTA TTA TTA TTA
   213330  CAG * 10    27/30     CAG CAG CAG CAG CAG TAG CAG CAG CGG CGG
   219182  TCA *  7    20/21     TCA TCA TCA TCA TCA TCA ACA
   222033  CAT *  7    20/21     CAT CAT CAT CAT CGT CAT CAT
   228742  GTT *  7    19/21     GTT GTT GTT GTT GTT GCT GCT
   231118  CAG * 12    33/36     CAG CAG CAG CAT CAG GAG CAG CAG CAG CAA CAG CAG
   232318  GCT *  8    22/24     GCT GCT GCT GCT GCT GCT CCT GGT
   233803  CAG *  7    20/21     CAG CAG CAG CAG CGG CAG CAG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       238433 
 Total number of repeats detected..............       58 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      3       3       0       0       0       0       0       0       0       0       0       0       0   
  AGC      8       5       3       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGA      3       3       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       0       0       1       0       0       0       0       0       0       0       0       0   
  TCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GGC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GCA      3       3       0       0       0       0       0       0       0       0       0       0       0   
  GCT      4       4       0       0       0       0       0       0       0       0       0       0       0   
  GCG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CAA      4       0       3       1       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      8       5       2       1       0       0       0       0       0       0       0       0       0   
  CTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      8       8       0       0       0       0       0       0       0       0       0       0       0   
  CCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   1 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   1 GAA +   0 CTT +   0 TTC +    0 TCT      =    1 
   3 AAC +    1 ACA +   4 CAA +   2 GTT +   1 TTG +    1 TGT      =   12 
   0 ATG +    3 TGA +   0 GAT +   1 CAT +   0 ATC +    2 TCA      =    6 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   1 CTA +    0 TAC      =    1 
   0 AGG +    0 GGA +   0 GAG +   1 CCT +   0 CTC +    1 TCC      =    2 
   8 AGC +    3 GCA +   8 CAG +   4 GCT +   8 CTG +    0 TGC      =   31 
   1 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    1 TCG      =    2 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   1 GGC +    1 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    2 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7300765|gb|AE003736.1|AE003736 Drosophila melanogaster genomic scaffold 142000013386035 section 61 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     3035  CAA *  8    22/24     CAA CAA CAA CAA CAG CAA CAG CAA
    27044  ATT *  7    19/21     ATT ATT GTT ATT ATT ATT GTT
    65371  TAT * 11    31/33     TAT TAT AAT TAT TAT TAA TAT TAT TAT TAT TAT
    72290  TAT * 14    38/42     TAT TAT AAT TAT TAT TAA TAT TAT TAT TAT TAT TGT TAT TAG
    73080  TAT * 18    50/54     TAT TAT AAT TAT TAT TAA TAT TAT TAT TAT TAT TGT TAT TAT TAT TGT TAT TAT
    76138  TGC *  9    25/27     TGC TGC TGC TGC TGC TGT TGC TGT TGC
    76167  CTG *  7    19/21     CTG CTG GTG TTG CTG CTG CTG
   102992  GCG *  7    19/21     GCG TCG GCG GCG GCG GCG GCT
   108770  CCG *  7    19/21     CCG CCA CCG ACG CCG CCG CCG
   113236  TGC *  7    19/21     TGC TGA TGC TGC TGC TGC GGC
   113259  CTG *  7    19/21     CTG CTG CTG CGG ATG CTG CTG
   114145  TCA *  7    19/21     TCA TCA TCA GCA TCA ACA TCA
   114176  CAT * 11    30/33     CAT CAT CAT CAT CAT CAT CAT CAT CAG CAG CAG
   117985  GCA *  7    19/21     GCA GCA GCG GCA ACA GCA GCA
   128529  AAC *  7    19/21     AAC AGC AAC AAC AAC AAC AAT
   130684  AAG * 10    27/30     AAG AAG AAG ACG AAG AAG AAG AAG AAG AGA
   142196  CAG *  7    19/21     CAG CAG CAG CAA CAG CAG CAA
   142461  TGC * 11    30/33     TGC TGC TGC AGC TGC TGC TGC TGC TGC TGT TGT
   144613  TTA *  7    19/21     TTA TTA GAA TTA TTA TTA TTA
   177208  TAT *  7    20/21     TAT TAT TAT TAT TAT TAT TGT
   205207  CTG *  7    19/21     CTG CTG CTG TTG CTG CTG CTT
   208855  CAT *  8    22/24     CAT CAT CAT CAT CAT CAT CAG CAG
   212880  AAT *  7    19/21     AAT AAT AAT AAT AAT AAC AAG
   223281  GCA *  7    19/21     GCA GCA GAA GCA ACA GCA GCA
   238755  TGC *  7    19/21     TGC TGT TGC TGC TGC TGC GGC
   238948  GCA *  7    19/21     GCA ACG GCA GCA GCA GCA GCA
   241377  GCT * 10    28/30     GCT GCT GCT GCT GCT GCT GCT GCT GCT GGC
   242277  GAT *  7    19/21     GAT GAT GGT GAT GAT CAT GAT
   247607  CAG *  8    22/24     CAG CAG CAG CAG CAG CAG CAA CAA
   247847  ACA *  8    23/24     ACA ACA ACA ACA ACA ACA ACT ACA
   247945  TGC *  7    19/21     TGC TGT TGC TGC TGC TGC TGT
   248830  CAG * 15    41/45     CAG CAG CAG CAG CAA CAG CAG CAG CAG CAG CAG CAA CTG CAG CAA
   259029  TGC *  8    23/24     TGC TGC TGC TGC TGC TGC TGC CGC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       260278 
 Total number of repeats detected..............       33 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AAG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAT      4       1       1       1       1       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      6       5       1       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      3       3       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CAG      3       2       0       1       0       0       0       0       0       0       0       0       0   
  CTG      3       3       0       0       0       0       0       0       0       0       0       0       0   
  CCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   1 ATT +   1 TTA +    4 TAT      =    7 
   1 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    1 
   1 AAC +    1 ACA +   1 CAA +   0 GTT +   0 TTG +    0 TGT      =    3 
   0 ATG +    0 TGA +   1 GAT +   2 CAT +   0 ATC +    1 TCA      =    4 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    3 GCA +   3 CAG +   1 GCT +   3 CTG +    6 TGC      =   16 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    1 GCG +   0 CGG +   0 GCC +   1 CCG +    0 CGC      =    2 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7300751|gb|AE003735.1|AE003735 Drosophila melanogaster genomic scaffold 142000013386035 section 60 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    92895  TGC * 11    30/33     TGC TGA TGC TGC TGC TGC TGC TGC TTC TGC TTC
    92940  TGG * 11    30/33     TGG TTA TGG TGG TGG TGG TGG TGG TGG TGG AGG
   101088  CAT *  7    20/21     CAT CAT CAT CAT CAT CAT CCT
   115606  TGA *  7    19/21     TGA TGA TGC TGC TGA TGA TGA
   115645  TGC *  7    19/21     TGC TGC TGC TGA TGC TGC CGC
   115956  GCT *  7    19/21     GCT GCT GCT GTT GCT ACT GCT
   119537  AAG * 10    27/30     AAG AAG AAG AAG AAG AAG CTG AAG AAG GAG
   132924  CAT * 10    27/30     CAT CAT CAT CAT CAT CAT CAG CAT CAG CAG
   134063  GGC *  7    19/21     GGC GGC GGC GTC GGC AGC GGC
   135560  TGC *  7    19/21     TGC TGC TGC TGC GGC TGC TTC
   139011  GTT *  7    19/21     GTT TCT GTT GTT GTT GTT GTT
   150331  CAC * 10    27/30     CAC CAC CAC CAC CAC CAC GAC CAC CAC CCA
   153948  ACA *  7    19/21     ACA ACA ACA ACA ACA ATA ATA
   158585  GCC *  8    22/24     GCC GCC GCC GCC GCC ACC ACC GCC
   159120  TGC *  7    19/21     TGC TGC TGC TGC TGC TGG TTC
   161698  TGC *  8    22/24     TGC TGC TGC TGC AGT TGC TGC TGC
   161900  TGT *  7    19/21     TGT TGT TGT TGT TGT TGA TGC
   170363  AAG *  8    22/24     AAG AAG AAG AAG AAG AAG AAT GAG
   192287  CAA *  7    19/21     CAA CAG CAG CAA CAA CAA CAA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       231849 
 Total number of repeats detected..............       19 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAG      2       1       1       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGC      5       4       1       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CAC      1       0       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   2 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    2 
   0 AAC +    1 ACA +   1 CAA +   1 GTT +   0 TTG +    1 TGT      =    4 
   0 ATG +    1 TGA +   0 GAT +   2 CAT +   0 ATC +    0 TCA      =    3 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    0 GCA +   0 CAG +   1 GCT +   0 CTG +    5 TGC      =    6 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   1 CAC +   0 GGT +   0 GTG +    1 TGG      =    2 
   1 GGC +    0 GCG +   0 CGG +   1 GCC +   0 CCG +    0 CGC      =    2 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7300718|gb|AE003734.1|AE003734 Drosophila melanogaster genomic scaffold 142000013386035 section 59 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    12059  AAC * 12    33/36     AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AGC TTC
    57238  CAT *  8    22/24     CAT AAT CAT CAT CAT CAT CGT CAT
    66556  AGC *  7    20/21     AGC AGC AGC AGC AGC AGG AGC
    70601  TGG *  8    22/24     TGG TTG TGG TGA TGG TGG TGG TGG
    75558  TAT *  8    22/24     TAT TTT TAT TAT TAT TAT TAT TAA
    98528  CTG *  8    22/24     CTG CTG CTG CTG CTG ATG CTC CTG
   100867  TAG *  8    22/24     TAG TAG TAG TAG TAG TAG TTA TAG
   100902  GTA *  8    22/24     GTA GTA GTA GCA GTA TTA GTA GTA
   106533  TCC *  7    19/21     TCC GCC TCC TCC ACC TCC TCC
   119557  GCT * 12    33/36     GCT GCT GAT GCT GCT GCT GAT GCT GCT GCT GCT GCG
   122112  AGC * 10    28/30     AGC AGA AGC AGA AGC AGC AGC AGC AGC AGC
   158330  GCA *  7    20/21     GCA GCA GCA GCA GCA GCA TCA
   167784  GGA *  9    25/27     GGA GGA GGA GGA GGA GGA GGA GTG GGA
   191399  AGC *  8    22/24     AGC AGC AGC AGC AGC AGC GGC AGA
   224296  AGC *  8    23/24     AGC AGC AGC AGC AGC AGC GGC AGC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       240910 
 Total number of repeats detected..............       15 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  AGC      4       3       1       0       0       0       0       0       0       0       0       0       0   
  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    1 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    1 
   0 ATG +    0 TGA +   0 GAT +   1 CAT +   0 ATC +    0 TCA      =    1 
   0 AGT +    1 GTA +   1 TAG +   0 ACT +   0 CTA +    0 TAC      =    2 
   0 AGG +    1 GGA +   0 GAG +   0 CCT +   0 CTC +    1 TCC      =    2 
   4 AGC +    1 GCA +   0 CAG +   1 GCT +   1 CTG +    0 TGC      =    7 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    1 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7300681|gb|AE003733.1|AE003733 Drosophila melanogaster genomic scaffold 142000013386035 section 58 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    32914  CAG * 10    27/30     CAG CAG CGG CAG CAG CGG CAG CAG CAG CAC
    70284  AGT *  7    20/21     AGT AGT AGT AGT AGT GGT AGT
    92160  GAT *  7    19/21     GAT GAC GAT GAT GGT GAT GAT
   105076  TGC *  8    22/24     TGC TGC ACC TGC TGC TGC TGC TGC
   106791  AGC *  8    23/24     AGC AGC AGT AGC AGC AGC AGC AGC
   110310  TGC *  7    19/21     TGC TGC TGC TGC TGC TGG TGA
   113972  CTG *  7    19/21     CTG CTG CCG CTG CTG CTG CTT
   114209  TGT *  7    19/21     TGT TGT TGT TAT TGT TGT TCT
   132231  CCA *  8    22/24     CCA CCA CCA ACA CCA CCA CCA TCA
   132256  CAG *  7    19/21     CAG AAG CAG CAG CAG CAG CAA
   142061  GTT *  9    25/27     GTT TTT GTT GTT GTT GTT GTT GTT GTG
   191904  CAG *  7    21/21     CAG CAG CAG CAG CAG CAG CAG
   206922  CCA *  7    20/21     CCA CAA CCA CCA CCA CCA CCA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       230303 
 Total number of repeats detected..............       13 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      3       2       1       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   1 GTT +   0 TTG +    1 TGT      =    2 
   0 ATG +    0 TGA +   1 GAT +   0 CAT +   0 ATC +    0 TCA      =    1 
   1 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    1 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   1 AGC +    0 GCA +   3 CAG +   0 GCT +   1 CTG +    2 TGC      =    7 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    2 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7300654|gb|AE003732.1|AE003732 Drosophila melanogaster genomic scaffold 142000013386035 section 57 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     4127  TTC *  7    19/21     TTC TTC TTG TTT TTC TTC TTC
     9211  TGC *  8    22/24     TGC TTC GGC TGC TGC TGC TGC TGC
    13329  ATT *  7    19/21     ATT ATT ATT ATT CTT ATT AAT
    16535  GTC *  8    23/24     GTC GTC GAC GTC GTC GTC GTC GTC
    31595  CAT *  8    22/24     CAT CAT CAT CGT CAT CAT CAT CAC
    33905  CTG *  7    19/21     CTG ATT CTG CTG CTG CTG CTG
    35313  CTT *  8    22/24     CTT CTT CTT CGT CTC CTT CTT CTT
    53089  ATG *  8    22/24     ATG ATG ATG ATG ATG ATG ACG ACG
    57042  CAA * 11    30/33     CAA CTA CAA CAA CAA CAT CAA CAA CAA CAG CAA
    71078  GCT *  9    25/27     GCT GCT GCT GCT GCT GCT GTT GCT GTT
    71111  GCT * 12    33/36     GCT GCT GTT GTT GCT GCT GCT GCT GCT GCT GCT TCT
    83829  GCA *  7    19/21     GCA GCT GCA GCA GCA GCA ACA
   102101  AGA *  9    25/27     AGA AGC AGG AGA AGA AGA AGA AGA AGA
   120670  CAT *  7    19/21     CAT AAT CAT CAT CAT CAA CAT
   171714  CCT *  8    22/24     CCT CCT CCT CTT CCT CCT CCT GCT
   181298  GCT * 14    38/42     GCT GCT GCT GCT GCT GCT GCT GCT GCT GGT GCG GAT GCT GGT
   186198  GAT *  8    22/24     GAT GAC GAT AAT GAT GAT GAT GAT
   196321  CTG *  7    19/21     CTG CTG TTG CTG CTG TTG CTG
   199958  TGC *  7    19/21     TGC TGC TGC TGC TGC TAC TAC
   212233  TAA *  7    19/21     TAA TAA TAT TCA TAA TAA TAA
   225601  ACA *  7    19/21     ACA ACA ACA ACA ACC AAA ACA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       234369 
 Total number of repeats detected..............       21 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      3       1       1       1       0       0       0       0       0       0       0       0       0   
  CAA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   1 TAA +   1 ATT +   0 TTA +    0 TAT      =    2 
   0 AAG +    1 AGA +   0 GAA +   1 CTT +   1 TTC +    0 TCT      =    3 
   0 AAC +    1 ACA +   1 CAA +   0 GTT +   0 TTG +    0 TGT      =    2 
   1 ATG +    0 TGA +   1 GAT +   2 CAT +   0 ATC +    0 TCA      =    4 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   1 CCT +   0 CTC +    0 TCC      =    1 
   0 AGC +    1 GCA +   0 CAG +   3 GCT +   2 CTG +    2 TGC      =    8 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   1 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7300622|gb|AE003731.1|AE003731 Drosophila melanogaster genomic scaffold 142000013386035 section 56 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    95410  CAA *  8    22/24     CAA CAA CAA CAA CAG CAG CAA CAA
    95434  CAG *  8    22/24     CAG CAA CAG CAG CAG CAG CAG CAA
   102466  GCT *  7    19/21     GCT GCT GCA GCT GCT GCT GCG
   133200  GCA *  7    19/21     GCA GCA GCA GCA GCA ACA TCA
   152996  CCG *  7    19/21     CCG CCG CCG CCT CCT CCG CCG
   163131  AGC *  7    19/21     AGC AGC AGC AGG AGC AGC ATC
   222687  TGG *  7    19/21     TGG TGG TAG TAG TGG TGG TGG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       225829 
 Total number of repeats detected..............       7 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   1 CAA +   0 GTT +   0 TTG +    0 TGT      =    1 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   1 AGC +    1 GCA +   1 CAG +   1 GCT +   0 CTG +    0 TGC      =    4 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    1 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   1 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7300601|gb|AE003730.1|AE003730 Drosophila melanogaster genomic scaffold 142000013386035 section 55 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    27969  CTC *  7    19/21     CTC CTG CTC CTG CTC CTC CTC
    27990  CTG *  7    20/21     CTG CTG CTG CTG CTA CTG CTG
    34308  ATT *  7    21/21     ATT ATT ATT ATT ATT ATT ATT
    50702  TTG *  9    25/27     TTG TTT TCG TTG TTG TTG TTG TTG TTG
    64122  GCG *  7    19/21     GCG GCG GCG GCG GCG GCT GTG
    84731  CGT *  7    19/21     CGT GGT CGT CGT CGT CGT TGT
    91609  GTT * 10    27/30     GTT GAT GTG GTT GTT GTT GTT GTT GTT ATT
   136218  TGT *  7    19/21     TGT TGT TGT TGT TGT TAT TGC
   157403  CAA * 11    30/33     CAA CAA CAA CAA CAA GAA CAA CAA CAG CAA CAC
   172537  CCA *  7    19/21     CCA CCA TCA CCA TCA CCA CCA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       221365 
 Total number of repeats detected..............       10 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   1 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   1 CAA +   1 GTT +   1 TTG +    1 TGT      =    4 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   1 CTC +    0 TCC      =    1 
   0 AGC +    0 GCA +   0 CAG +   0 GCT +   1 CTG +    0 TGC      =    1 
   0 ACG +    0 CGA +   0 GAC +   1 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    1 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    1 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7300591|gb|AE003729.1|AE003729 Drosophila melanogaster genomic scaffold 142000013386035 section 54 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    34602  GCA *  7    19/21     GCA GCA GCA GCA GCA ACT GCA
    52633  AGC *  7    19/21     AGC AGC AGC TGC AGC AGC ATC
   100530  AAT *  8    22/24     AAT AAT AAT AAT AAT AAG TAT AAT
   105950  AGC * 10    28/30     AGC AGC AGC AGC AGC AGC AGT AGA AGC AGC
   120499  CAG *  7    19/21     CAG CAG CAG CAG CAG CCG CAT
   139744  GCT *  7    19/21     GCT GCT GCT GTT GCT GCG GCT
   154395  AAT *  7    19/21     AAT AAT AAT AAT AAT AAT ACG
   155256  AGC * 10    27/30     AGC CGC AGC AGC AGC CGC AGC AGC AGC GGC
   156115  AGC *  7    19/21     AGC AGC AGC AGC AAC ACC AGC
   166752  CAG *  7    19/21     CAG CAT CCG CAG CAG CAG CAG
   183425  AGC *  7    19/21     AGC AGC AGC AGC AGC AAC AAC
   186237  TTG *  8    22/24     TTG TTG TTT TTG TTG TTG CTG TTG
   195560  TAT *  7    19/21     TAT TAT TAT TAT TAT TAT ATT
   216664  CAG *  7    19/21     CAG CAG CAA CAG CAG CAG CAA
   216985  CAG *  7    20/21     CAG CAG CAG CAG CAG CAG CAA
   217122  CAG *  7    19/21     CAG TAG CAA CAG CAG CAG CAG
   217330  CAG *  8    22/24     CAG CAG CAG CAG CAG CAA CAA CAG
   217414  CAG *  7    19/21     CAG CAG CAG CAA CAG CAG CAA
   222243  GCA *  7    19/21     GCA GCA GCA ACA GCA GCA ACA
   222363  CAA *  7    19/21     CAA CAA CAA CAA CAA CAG TAA
   223162  GCA *  8    22/24     GCA ACA GCA GCA GCA GCA TCA GCA
   223196  CAG *  7    19/21     CAG CAG CAA CTG CAG CAG CAG
   223591  GCA *  9    25/27     GCA GCA ACA GCA GCA GCA GCA ACA GCA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       230977 
 Total number of repeats detected..............       23 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  AGC      5       3       2       0       0       0       0       0       0       0       0       0       0   
  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      4       4       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      8       8       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   2 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    1 TAT      =    3 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   1 CAA +   0 GTT +   1 TTG +    0 TGT      =    2 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   5 AGC +    4 GCA +   8 CAG +   1 GCT +   0 CTG +    0 TGC      =   18 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7300549|gb|AE003728.1|AE003728 Drosophila melanogaster genomic scaffold 142000013386035 section 53 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     1113  GCA * 10    27/30     GCA GAA GCA GCG GCA GCA GCA GCA GCA GGA
    14989  TTA *  7    19/21     TTA TTA TTA TTA TTA TTA AAA
    37840  ATT *  7    20/21     ATT ATT ATT ATT ATT ATT ATA
    48464  TGT *  8    22/24     TGT TGT TTT TGT TGC TGT TGT TGT
    48508  TGT *  8    22/24     TGT TCT TGT TGT TGT TGT TGC TGT
    52692  AGC * 10    28/30     AGC AGC AGC AGC CGC AGC AGC AGC AAC AGC
    55495  CAG *  7    19/21     CAG CAG CAG CAG CAT CAA CAG
    67477  AGC *  7    19/21     AGC AAC AGC AGC AGC AGC AAC
   111718  ATT *  7    19/21     ATT ATT ATT ATT ATT ATG TTT
   114664  GGT *  7    19/21     GGT GGT GAT GGT GAT GGT GGT
   171771  GCA *  7    19/21     GCA GCA GCA GCA GCA GAA TCA
   172017  GCA *  7    20/21     GCA GCA GCA GCA ACA GCA GCA
   172041  GCA *  9    25/27     GCA GCA GCA GCA GCA GCA GCA ACA ACA
   172159  CAG *  7    19/21     CAG CAA CAG CAA CAG CAG CAG
   172824  GCA *  8    22/24     GCA ACA GCA GCA GCA ACA GCA GCA
   172891  CAA *  7    19/21     CAA CAG CAA CAA CAA CAA CAG
   174295  CGT *  8    22/24     CGT CGT CGT CGT CGT CGT CGT CAG
   226998  ATA *  7    19/21     ATA ATT ATA ATA ATA ATA ATC
   229165  CAG *  7    19/21     CAG AAG CAG CAG CAG AAG CAG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       231828 
 Total number of repeats detected..............       19 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  AGC      2       1       1       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      5       4       1       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      3       3       0       0       0       0       0       0       0       0       0       0       0   
  CGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    1 ATA +   0 TAA +   2 ATT +   1 TTA +    0 TAT      =    4 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   1 CAA +   0 GTT +   0 TTG +    2 TGT      =    3 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   2 AGC +    5 GCA +   3 CAG +   0 GCT +   0 CTG +    0 TGC      =   10 
   0 ACG +    0 CGA +   0 GAC +   1 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   1 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7300524|gb|AE003727.1|AE003727 Drosophila melanogaster genomic scaffold 142000013386035 section 52 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    73601  AAG *  8    22/24     AAG AAG AAA AAG AAG AAG AAT AAG
    84328  GCA *  7    19/21     GCA TCA GCA GCA GCG GCA GCA
    87405  GCT *  7    19/21     GCT GCT CCT GCT GCT TCT GCT
    93452  CAT *  8    22/24     CAT CAT CAT CAT CAT CAT CAT TGT
   124112  CTG *  8    23/24     CTG CTG CTG CTG CTG CTG CTG CTT
   130949  CGT *  7    19/21     CGT CGT CGT CGG CGT CGT CGA
   132424  GAA *  9    25/27     GAA GAC GAA GAC GAA GAA GAA GAA GAA
   132547  GCT *  7    19/21     GCT GCT GCT GCC GCT GCT TCT
   133691  GAT *  7    19/21     GAT GAC GAT GAC GAT GAT GAT
   135614  CAG *  8    22/24     CAG CAG CAG CAG CAG CAA CAG CAA
   135790  AGC *  7    19/21     AGC AGA AGC AGC AGC AGC AGT
   163162  CCA *  7    19/21     CCA CCA CAA CCA CAA CCA CCA
   169369  ACA *  7    19/21     ACA ACA ACA ACA AGA ACT ACA
   179161  AAT *  7    19/21     AAT GAT AAT AAT AAT GAT AAT
   201258  CTG *  8    22/24     CTG ATG CTG TTG CTG CTG CTG CTG
   201637  CTA *  7    19/21     CTA CTA CTA TTG CTA CTA CTA
   201793  CTG *  7    19/21     CTG CTA CTA CTG CTG CTG CTG
   228908  CAC *  7    19/21     CAC CAG CAC CAC CAA CAC CAC
   232569  TGC *  7    19/21     TGC TGC TGC TGA TGC TGT TGC
   238411  AAC *  7    19/21     AAC AAC AAG AAT AAC AAC AAC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       242709 
 Total number of repeats detected..............       20 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      3       3       0       0       0       0       0       0       0       0       0       0       0   
  CGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   1 AAG +    0 AGA +   1 GAA +   0 CTT +   0 TTC +    0 TCT      =    2 
   1 AAC +    1 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    2 
   0 ATG +    0 TGA +   1 GAT +   1 CAT +   0 ATC +    0 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   1 CTA +    0 TAC      =    1 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   1 AGC +    1 GCA +   1 CAG +   2 GCT +   3 CTG +    1 TGC      =    9 
   0 ACG +    0 CGA +   0 GAC +   1 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    1 CCA +   1 CAC +   0 GGT +   0 GTG +    0 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7300503|gb|AE003726.1|AE003726 Drosophila melanogaster genomic scaffold 142000013386035 section 51 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    14440  TAA *  8    22/24     TAA TAA TAA CAA TAA TAA TAA CAA
    68615  CAT *  7    19/21     CAT CAT CAT CAT CAT CAG CAG
   113668  GAT * 11    31/33     GAT GAT GAT GAT GAT GAT GGT GAT GAT GAC GAT
   149234  GCT *  7    19/21     GCT GCC GCT GCC GCT GCT GCT
   149258  GCT *  7    19/21     GCT GCT GCA GCT GCT GCC GCT
   168690  GCA *  8    22/24     GCA GCA TCA GCA GCA GCA ACA GCA
   171019  CAG * 12    33/36     CAG CAG CAG CAG CAT CAG CAG CAG CAG CAA CAA CAG
   223968  TGC *  7    20/21     TGC TGC TGC TGC TGC TGC TGG
   237940  GCA *  7    19/21     GCA CCA ACA GCA GCA GCA GCA
   238102  GCA *  7    19/21     GCA ACA GCA GCA CCA GCA GCA
   238630  ACG *  7    20/21     ACG ACG ACG ACG ACG ACC ACG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       239525 
 Total number of repeats detected..............       11 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ACG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GCA      3       3       0       0       0       0       0       0       0       0       0       0       0   
  GCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       0       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   1 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    0 
   0 ATG +    0 TGA +   1 GAT +   1 CAT +   0 ATC +    0 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    3 GCA +   1 CAG +   2 GCT +   0 CTG +    1 TGC      =    7 
   1 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7300476|gb|AE003725.1|AE003725 Drosophila melanogaster genomic scaffold 142000013386035 section 50 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    21890  TGC * 10    27/30     TGC TGC TGC TGC TGC TGC TGC TCC TGC TCG
    24531  TGC *  8    22/24     TGC TGC TGT TGC TGT TGC TGC TGC
    29539  TCA *  7    20/21     TCA TCA TCA TCA TCT TCA TCA
    30027  GAC *  7    19/21     GAC GAC GAC GAC GAT GAC GAT
    34148  CAG * 11    31/33     CAG CAG CAG CAG CAG CAG CAG CAG CAG CAC CAT
    64313  GCA *  8    22/24     GCA GCA GCA GCA TCA GCA ACA GCA
    64608  AAC *  7    19/21     AAC AAT AAT AAC AAC AAC AAC
    73951  CAG *  7    19/21     CAG CAG CAG CAG CAG CAT CTG
    75018  GCA * 10    27/30     GCA GCA GCA GCA TCA GCA ACA GCA GCA GGA
    75160  CAG *  7    19/21     CAG CAA CAA CAG CAG CAG CAG
    95905  CAG * 22    60/66     CAG CAG TAG CAG CAG CAG CAG CAG CAG CAG TAG CAG TAG CAG CAG CAG TAG CAG CAG CAG TAG CAC
   117993  CTG * 11    30/33     CTG CTG CTG CTG CTG CTG CTG CTG CTG TCG GTG
   158008  TGC * 11    30/33     TGC TGC TGC TGC TGC TGC TGC CGC TGA TGT TGC
   158190  GCA * 10    27/30     GCA GCA ACA GCA GCA GCA GCA TCA GCA TCA
   158478  GCA *  8    22/24     GCA GCT GCA GCA GCA GCA GCA GCC
   159974  CAG *  8    22/24     CAG CAG CAG AAG CAG CAG CAG CAA
   164117  GAT *  8    23/24     GAT GAT GAT GAT GAT GAT GAT TAT
   193386  TCG *  7    20/21     TCG TCG TCG TCG TCT TCG TCG
   196055  CAT *  8    23/24     CAT CAT CAT CAT CAT CAT CAT GAT
   212378  CCG *  8    22/24     CCG CCG CTG CTG CCG CCG CCG CCG
   216726  GCA * 10    27/30     GCA GCA GCA TCA GCA GCA GCG GCA GCA GGA
   218104  TCA *  9    25/27     TCA TCA TCA TCA CCA CCA TCA TCA TCA
   240804  ACA *  8    22/24     ACA ACA ACA ACA ACA ATA GCA ACA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       254846 
 Total number of repeats detected..............       23 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      3       1       2       0       0       0       0       0       0       0       0       0       0   
  TCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      5       2       3       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      5       3       1       0       0       0       1       0       0       0       0       0       0   
  CTG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    1 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    2 
   0 ATG +    0 TGA +   1 GAT +   1 CAT +   0 ATC +    2 TCA      =    4 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    5 GCA +   5 CAG +   0 GCT +   1 CTG +    3 TGC      =   14 
   0 ACG +    0 CGA +   1 GAC +   0 CGT +   0 GTC +    1 TCG      =    2 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   1 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7300442|gb|AE003724.1|AE003724 Drosophila melanogaster genomic scaffold 142000013386035 section 49 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    21456  CTG *  7    19/21     CTG CTG CTT CTG CTC CTG CTG
    31615  CTC *  9    26/27     CTC CTC CTC CGC CTC CTC CTC CTC CTC
    35028  GTT *  7    19/21     GTT GTT GTT GCT GTT GCT GTT
    46483  AGC * 10    28/30     AGC AGG AGC AGC AGA AGC AGC AGC AGC AGC
    58835  CAA *  7    19/21     CAA CAG CAA CAA CAA CAG CAA
    66345  TGT *  7    19/21     TGT TGT TGT TGT TTT TGT GGT
    67569  AAC *  7    20/21     AAC AAC AAC AAC AAC AAC AAA
    72441  TGC *  7    19/21     TGC TGC TGC TGC TGC TGA TGG
    77221  GCT * 11    30/33     GCT GCT GCC GCT GCT GTT GCT GCT GCT GCT GCA
    82139  GCT *  8    22/24     GCT GCT GCT GCT GCT GCT GCG GAT
    87867  GAG *  8    22/24     GAG AAG GAG GCG GAG GAG GAG GAG
   102255  TCA * 13    36/39     TCA TAA TCA TAA TCA TCA TCA TCA TCA TCA TCA TCA TCC
   127223  CTG *  7    20/21     CTG CTG CTG CTG CTG CTG ATG
   140983  CAA *  8    22/24     CAA CAA CAA CAA CAA CAA CTG CAA
   147837  GTC *  8    23/24     GTC GTC GTC GTC GTC GCC GTC GTC
   148058  CGA *  8    22/24     CGA CGG CGA CGA CGA CGA CGA CAA
   153377  TGT *  7    19/21     TGT TGT TGT TAT TGT TGT TTT
   155587  ACA * 11    30/33     ACA TCA GCA ACA ACA ACA ACA ACA ACA AGA ACA
   178832  CAG * 10    27/30     CAG CAA CAG CAG CAG CAA CAG CAG CAG CAA
   178871  CAA *  7    19/21     CAA CAG CAA CAC CAA CAA CAA
   178933  ACA *  7    19/21     ACA ACA ACA ACA TCA ACA CCA
   191682  GCC *  7    19/21     GCC GCC GCC GCC GCC GCC GAA
   191803  CAG *  8    22/24     CAG CAG CAG CAC CAA CAG CAG CAG
   192171  GCA *  7    19/21     GCA GCT GCA GCA GCA GCA GCG
   201614  GTC *  9    25/27     GTC GTC GTC GCC GTC GTC GTC GTC GTG
   204913  TAA *  7    20/21     TAA TAA TAA TAA TAA TAA CAA
   205597  ACG *  7    19/21     ACG ACG ACG ACG ACG ACA ACA
   207379  CAC *  7    19/21     CAC CAC CAC CAC CAC CAA CAA
   210870  AAC *  7    19/21     AAC AAC AAC AAC AAC AGC AAG
   211389  TCG *  7    20/21     TCG TCG TCG TCG TCG TCG TCA
   218930  CAT *  7    19/21     CAT CAT CAT CAT CAT CAT CTC
   221600  CAA *  9    25/27     CAA CAA CAA CAA CAA CAG CAG CAA CAA
   221800  CTG * 16    44/48     CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG ATG TTG CTG TTG CAG
   229204  CAT *  7    19/21     CAT CAT CAT CAT CAT CAG CAG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       232361 
 Total number of repeats detected..............       34 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  ACA      2       1       1       0       0       0       0       0       0       0       0       0       0   
  ACG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCA      1       0       0       1       0       0       0       0       0       0       0       0       0   
  TCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      4       4       0       0       0       0       0       0       0       0       0       0       0   
  CAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAG      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      3       2       0       0       1       0       0       0       0       0       0       0       0   
  CTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   1 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   2 AAC +    2 ACA +   4 CAA +   1 GTT +   0 TTG +    2 TGT      =   11 
   0 ATG +    0 TGA +   0 GAT +   2 CAT +   0 ATC +    1 TCA      =    3 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   1 GAG +   0 CCT +   1 CTC +    0 TCC      =    2 
   1 AGC +    1 GCA +   2 CAG +   2 GCT +   3 CTG +    1 TGC      =   10 
   1 ACG +    1 CGA +   0 GAC +   0 CGT +   2 GTC +    1 TCG      =    5 
   0 ACC +    0 CCA +   1 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   1 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7300414|gb|AE003723.1|AE003723 Drosophila melanogaster genomic scaffold 142000013386035 section 48 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     6442  AAT *  7    19/21     AAT AAT AAT AAT AAT AAC AAA
    32983  ATA * 10    27/30     ATA GTA ATA ATA ATA ATA ATA ATA ATA CAA
    47542  CTG *  8    22/24     CTG CTG TTG CTG CTG CTG TTG CTG
    48001  CTG *  7    20/21     CTG CGG CTG CTG CTG CTG CTG
    48165  TGC *  7    19/21     TGC TGC TGC TGA GGC TGC TGC
   100812  ACT *  8    23/24     ACT ACT ACT ACT ACA ACT ACT ACT
   102575  ACC *  8    22/24     ACC ACC AGC ACC AGC ACC ACC ACC
   106081  CAG *  8    22/24     CAG CAG CAG CAG CAG CAG CAA CAA
   171438  TGA * 10    28/30     TGA TGA TGA TGA TGA TGA TGA TGA TGA TAG
   173963  TCA *  7    19/21     TCA TCA TCA TCA TCG CCA TCA
   178335  GCT * 10    28/30     GCT GCT GCT GTT GCT GCT GCT GCT GCT TCT
   186554  AAT * 11    31/33     AAT AAT AAT AAT AAT AAT ATT AAA AAT AAT AAT
   193388  GTC *  7    21/21     GTC GTC GTC GTC GTC GTC GTC
   195168  TTG * 11    31/33     TTG TTG TTG TTG TTG TTG TTG GTG TTA TTG TTG
   198107  CTG * 12    33/36     CTG CTG CTG CTG TTG CTG CTG CTG CTG CTG CTG ATT
   210849  AAG *  7    19/21     AAG AAG AAG ATG AGG AAG AAG
   211218  TCC *  8    22/24     TCC TCC TCC TCC TCC TCC ACC ACC
   218609  AGC *  8    22/24     AGC AGC AGC AGC AGC AGC AAC AAC
   221485  TAG *  7    19/21     TAG TAG TAG TAC TAG GAG TAG
   228860  TTA *  7    19/21     TTA TTA TTA TTA TTA TTT TTT
   236437  CGA *  7    19/21     CGA CGA TGA CGA TGA CGA CGA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       253747 
 Total number of repeats detected..............       21 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  AAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      3       2       1       0       0       0       0       0       0       0       0       0       0   
  CGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   2 AAT +    1 ATA +   0 TAA +   0 ATT +   1 TTA +    0 TAT      =    4 
   1 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    1 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   1 TTG +    0 TGT      =    1 
   0 ATG +    1 TGA +   0 GAT +   0 CAT +   0 ATC +    1 TCA      =    2 
   0 AGT +    0 GTA +   1 TAG +   1 ACT +   0 CTA +    0 TAC      =    2 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    1 TCC      =    1 
   1 AGC +    0 GCA +   1 CAG +   1 GCT +   3 CTG +    1 TGC      =    7 
   0 ACG +    1 CGA +   0 GAC +   0 CGT +   1 GTC +    0 TCG      =    2 
   1 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7300390|gb|AE003722.1|AE003722 Drosophila melanogaster genomic scaffold 142000013386035 section 47 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    22124  TGA *  7    19/21     TGA TGA TGA TGA TGA TGG TGG
    22162  GTG *  7    19/21     GTG GTG TTG GTG GTG GTG ATG
    23479  TGC *  7    19/21     TGC TGC TGC TGC TGG AGC TGC
    30617  TGC *  9    25/27     TGC TGC TGC TGC TGC TGC TGC TGG TGA
    31198  TGC *  7    19/21     TGC GGC TGA TGC TGC TGC TGC
    31222  TGC * 11    30/33     TGC TGC TCC TGC TGC TGC TGC TTC TGC TTC TGC
    33983  GGT *  7    20/21     GGT GGT GTT GGT GGT GGT GGT
    36676  TAT *  8    22/24     TAT TGT TAT TAT TAT TAT TAC TAT
    36969  TGC *  9    25/27     TGC TGC TGC TGC TGC TGT TGC TGC CGC
    37028  CTG * 11    30/33     CTG CTG CTG TTG CTG CTG CTG CTG ATG TTG CTG
    37283  CTG *  9    25/27     CTG CTG CTG TTG CTG CTG CTG CTG TTG
    37313  CTG * 10    27/30     CTG CTG ATG CTG CTG CTG CTG CTG GTG TTG
    37350  TGC * 11    31/33     TGC TGC TGC TGC TGC TGC TGT TGC TGC TGT TGC
    49346  GCC *  8    22/24     GCC GCC GCC GCC GCT GCT GCC GCC
    50754  TGT * 10    27/30     TGT TGT TGT TTT TGT TGC TGT TGT TGT GGT
    54149  TGT *  7    20/21     TGT TGT TGT TGT TGT TGT TAT
    57380  TGC * 18    50/54     TGC TGC TCC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TAC TTT TGC
    72088  CAG *  7    19/21     CAG CAG CAG CAG CAG CAA CAT
    74375  TTA *  7    19/21     TTA TTG TTA TTA TTA TTA TTG
    80368  GCA * 11    30/33     GCA GCA GCA GCA GCA GCA GCG GCA GCG GCA ACA
    84415  TGA * 11    31/33     TGA TGA TGA TGA TGA TGA TGA TGA TGA CGA GGA
    85183  TAA *  7    20/21     TAA AAA TAA TAA TAA TAA TAA
    88721  GCA *  7    19/21     GCA GCA GCA GCA GCC GCC GCA
    89124  ACA *  8    22/24     ACA ACA ACA ACG ACT ACA ACA ACA
    91251  AGC * 10    28/30     AGC AGC AGC AGC ACC AGC AGC AGC AGC TGC
   105551  CAG *  7    20/21     CAG CCG CAG CAG CAG CAG CAG
   109863  CTG *  7    19/21     CTG CTG CTG CTG CTG CTT TTG
   111812  TGT *  7    19/21     TGT TGT TGT TGT TGT TGC TGC
   114524  CTG *  7    19/21     CTG TTG TTG CTG CTG CTG CTG
   114811  CAA *  7    19/21     CAA CAA AAA CAA CAA CAA CAG
   117236  ACA *  7    19/21     ACA ACA GCA TCA ACA ACA ACA
   142346  CAG *  7    19/21     CAG CAG CAG TAG CAG AAG CAG
   160302  GCA *  7    19/21     GCA GCA GCA GCA GGC GCA GCA
   160482  CAG * 12    33/36     CAG CAG CAG CAG CAG CAG CAG CAA CAG CAG CAA CAC
   191298  TTA *  7    19/21     TTA TTA TTA TTA CTA TTA TTT
   200924  CAA *  7    19/21     CAA CAA CAA CAA CAA CCA GAA
   210131  TGC *  8    22/24     TGC TGT TGC TGC TCC TGC TGC TGC
   211762  TGC *  8    22/24     TGC GGC TGC TGC TGC TGC TGC TCC
   212182  TGC * 12    34/36     TGC TGC TGC TGC TGC TGC TGC TGC TGC TGG TGG TGC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       222917 
 Total number of repeats detected..............       39 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AGC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  ACA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGA      2       1       1       0       0       0       0       0       0       0       0       0       0   
  TGT      3       2       1       0       0       0       0       0       0       0       0       0       0   
  TGC     10       6       3       0       1       0       0       0       0       0       0       0       0   
  GTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      3       2       1       0       0       0       0       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAG      4       3       1       0       0       0       0       0       0       0       0       0       0   
  CTG      5       3       2       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   1 TAA +   0 ATT +   2 TTA +    1 TAT      =    4 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    2 ACA +   2 CAA +   0 GTT +   0 TTG +    3 TGT      =    7 
   0 ATG +    2 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   1 AGC +    3 GCA +   4 CAG +   0 GCT +   5 CTG +   10 TGC      =   23 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   1 GGT +   1 GTG +    0 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   1 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7300335|gb|AE003721.1|AE003721 Drosophila melanogaster genomic scaffold 142000013386035 section 46 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     1735  TTA *  7    19/21     TTA TTG TTG TTA TTA TTA TTA
     9434  CAG *  7    19/21     CAG CAG CAG CAG TAG CGG CAG
    12790  CAG * 10    27/30     CAG CAG GAG CCG CAG CAG CAG CAG CAG CAA
    13003  CAG *  7    19/21     CAG CAG CAG GAG CAG CAA CAG
    14045  GCG *  7    19/21     GCG GCG GCG GCA GCA GCG GCG
    14115  CCG *  7    19/21     CCG CCG CCA CCG CCG TCG CCG
    16433  GCC *  7    19/21     GCC GCC GCC TCC GCT GCC GCC
    22791  GCT * 10    27/30     GCT GCT GCT GCT GCT AAT GCT GCT GCT GCC
    34574  TGC * 10    27/30     TGC TGC TGA TGC TGC TGC TGC TGT TGC TGG
    52001  AGC *  7    19/21     AGC GCC AGC AGC AGC AGC AGC
    72481  GAT * 11    30/33     GAT GAT GAT GTT GAT GAT GAT GGT GAT GGT GAT
    76078  CAG *  8    23/24     CAG CAG CAG CAG CAG CAG CAG CAA
    76274  AGC * 10    27/30     AGC AGC AGC AGC AGC AGC AGC ATC ATC ATC
    76375  CAG * 10    27/30     CAG CAG CAA CAG CAG CAG CAG CAA CAG CTG
    77876  CAG *  8    23/24     CAG CAG CAG CAG CAG CAG CAG CAA
    87809  ACA * 10    28/30     ACA ACA ACA ACA ACA AAA TCA ACA ACA ACA
   106445  GAT * 10    27/30     GAT GAT TAT GAT GAC GAT GAT GAT GAT GAG
   109241  CAG * 10    27/30     CAG TTG CAG CAG CAG CAG CAG CAG CAG CAA
   109345  CAA *  7    19/21     CAA CAA CAA CAA CAA CAG CAG
   109367  AGC *  7    20/21     AGC AGC AGC AAC AGC AGC AGC
   109627  CAA * 11    30/33     CAA CCC CAA CAA CAA CAA CAA CAA CAA CAA TAA
   130247  GGT *  7    19/21     GGT GGT GGT TGT GGT AGT GGT
   130815  TGC *  7    19/21     TGC TGC AGG TGC TGC TGC TGC
   163271  CAG *  7    19/21     CAG CAT CAG CAG CAT CAG CAG
   174979  TTG *  8    22/24     TTG TTG TTG TTC TTC TTG TTG TTG
   180092  TTG *  7    21/21     TTG TTG TTG TTG TTG TTG TTG
   194537  GCT * 10    28/30     GCT GCT GCT GCC GCT GCT GCT GCG GCT GCT
   195046  GTT *  9    25/27     GTT GTT CTT GTT GTT GTT GCT GTT GTT
   209812  TGC *  7    19/21     TGC TGG TGC TGC TGG TGC TGC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       224896 
 Total number of repeats detected..............       29 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AGC      3       2       1       0       0       0       0       0       0       0       0       0       0   
  ACA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGC      3       2       1       0       0       0       0       0       0       0       0       0       0   
  GAT      2       0       2       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      2       0       2       0       0       0       0       0       0       0       0       0       0   
  GCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CAG      8       5       3       0       0       0       0       0       0       0       0       0       0   
  CCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   1 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    1 ACA +   2 CAA +   1 GTT +   2 TTG +    0 TGT      =    6 
   0 ATG +    0 TGA +   2 GAT +   0 CAT +   0 ATC +    0 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   3 AGC +    0 GCA +   8 CAG +   2 GCT +   0 CTG +    3 TGC      =   16 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   1 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    1 GCG +   0 CGG +   1 GCC +   1 CCG +    0 CGC      =    3 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7300322|gb|AE003720.1|AE003720 Drosophila melanogaster genomic scaffold 142000013386035 section 45 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     1646  ACA *  8    23/24     ACA ACA AGA ACA ACA ACA ACA ACA
     2653  TGT *  7    19/21     TGT TAT TGC TGT TGT TGT TGT
     5863  AGG *  8    22/24     AGG AGG AGG AGG CGG AGA AGG AGG
     9754  GCT * 10    28/30     GCT GCT GCT GCT GCT GTT GCT GCT GCT GCG
    17424  GCA *  8    22/24     GCA GCA GCA GCA GCA GCA GCA GTT
    26514  ATC *  7    20/21     ATC ATC ATC ATC ATC ATC ATA
    29392  GCC *  7    19/21     GCC GCC ACC GCC GCC GCA GCC
    29914  CAG *  7    20/21     CAG CAG CAG CAG CAA CAG CAG
    30027  GCA *  9    25/27     GCA GCA ACA GCA GCA GCA GCA GCA ACA
    30229  AGC *  7    20/21     AGC AGC GGC AGC AGC AGC AGC
    30254  ACA *  8    22/24     ACA ACA GCA ACA ACA ACA GCA ACA
    30467  CAG *  7    19/21     CAG CAA CAG CCG CAG CAG CAG
    30564  CAG * 10    27/30     CAG CAG CAG CAG CAG CAA CAG CAA CAG CAA
    39130  CAA *  9    25/27     CAA CAA CAA CAA CAA CAA CAA CAG CAC
    41449  CAG *  8    22/24     CAG CAG CAG CAG CAA CAG CAG CAA
    44114  CTC *  8    22/24     CTC CTG CTC CTC CTC CTC CTC CTA
    48758  TGC * 11    30/33     TGC TGC TGC TGC TGC TGC TGC TGC TGT TGC TCG
    50045  CCT *  7    19/21     CCT CCT CCT CTT TCT CCT CCT
    51219  CCA *  7    19/21     CCA CCA CCA CCA CCA CCA ACC
    65930  CAG *  8    22/24     CAG CAG CAG CAG CAG CAA CAG CAC
    74334  CAG * 12    33/36     CAG CAG CAG CAG CAG CAG CAG CAG CAG CAA CTC CAG
    74925  ACA * 12    33/36     ACA ACA ACA ACA ACA ACA ACA ACA GCA ACA GCA GCA
    76092  GCA * 11    30/33     GCA GCA GCA ACA GCA GCA GCA GCA GCA CCA CCA
    76171  CAG *  7    19/21     CAG CAG CAG CAA CAG CAG CAC
    76207  CAG *  7    19/21     CAG CAA CAG CAG CAG CAA CAG
    76257  CCA * 10    27/30     CCA CCA CCA CCA CCA CCA TCA TCA CCA TCA
    76328  CGA *  8    22/24     CGA CAA CGA CGA CGA CGA CTA CGA
    76399  CAG *  7    19/21     CAG CAG CAG CAG CTG CAG CCG
    90043  CCT *  7    19/21     CCT CCA CCT CCA CCT CCT CCT
   121914  ATC * 10    28/30     ATC ATC ATC ATC ATT ATC ATC ATG ATC ATC
   129804  GAT *  8    22/24     GAT GAT GAT GAT GAT GAT GAT GCA
   130390  CTC *  8    23/24     CTC CTC CTC CTC CTC CTC CTC CTT
   154188  CAA *  7    19/21     CAA GAA CAA CAA CAA CAA CAC
   157442  TTA * 12    33/36     TTA TTA TTA TTA TTA ATA TTA TTA TTT TTA TTA TTG
   160194  CAG * 10    27/30     CAG CAA CAG CAG CAG CAA CAG CAG CAG CAA
   160229  GCA *  8    22/24     GCA GCA GCA GCA ACA GCA GCC GCA
   163837  TGA *  7    19/21     TGA TGC TGA TGA TGA TGA TGC
   168504  TGC *  7    19/21     TGC TGC TGC TGT TGC TGC AGC
   171103  TGC *  9    26/27     TGC TGC TGC TGC TGC TGC TGC TGT TGC
   171208  AAC *  9    25/27     AAC ATC GAC AAC AAC AAC AAC AAC AAC
   181898  GCA *  9    25/27     GCA GCA GCA GCA GCA GCA GCA GTA GAA
   188038  TAT *  7    19/21     TAT TAT TAT TGT TAT TAT TAA
   188400  AAT *  8    23/24     AAT AAT AAT AAT AAT AAT AAT AAG
   192660  TGC *  7    19/21     TGC TGC TGC TGC TGC TGC TAT
   194210  ACA * 11    31/33     ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA CAA
   194331  ACA *  7    19/21     ACA CCA ACA GCA ACA ACA ACA
   194407  CAG * 10    28/30     CAG CAG CAG CAG CAG CAG CAG CAG CAA CAC
   194515  CAC *  8    22/24     CAC CAT CAC CAC CAC CAC CAT CAC
   194547  ACA *  7    19/21     ACA ACA ACT CCA ACA ACA ACA
   194569  CAA *  8    22/24     CAA CAA CAA CAA CAA CAG CAG CAA
   194806  CAG *  7    19/21     CAG CAG CAG CAG CAC CAG CAA
   194973  GCA * 18    51/54     GCA GCA GCA GCA GCA ACA GCA GCA GCA GCA GCA GCA GCA GCA GCA ACA ACA GCA
   195306  GCA * 11    30/33     GCA GCA GGT GCA GCA GCA GCA GCA GCA ACA GCA
   195958  CAG * 11    30/33     CAG CAG CAG CAA CAG CAA CAG CAG CAG CAG CAA
   195997  CAG *  8    22/24     CAG CAG CAG CAG CAG CAG TTG CAG
   200495  AGC *  7    19/21     AGC AGG AGC AAC AGC AGC AGC
   204561  AGC *  8    22/24     AGC AGC AGC AGC AGC AGC AGC AAA
   207582  TGC *  9    25/27     TGC TGC TGC TGC TGC TGC TCT TGC TGC
   212633  TAT *  8    22/24     TAT CAT TAT TAT TAT TAT TAT TAC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       224263 
 Total number of repeats detected..............       59 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATC      2       1       1       0       0       0       0       0       0       0       0       0       0   
  AGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      3       3       0       0       0       0       0       0       0       0       0       0       0   
  ACA      6       4       2       0       0       0       0       0       0       0       0       0       0   
  TAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      5       4       1       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      7       4       2       0       1       0       0       0       0       0       0       0       0   
  GCT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      3       3       0       0       0       0       0       0       0       0       0       0       0   
  CAG     14       9       5       0       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCA      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   1 TTA +    2 TAT      =    4 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    6 ACA +   3 CAA +   0 GTT +   0 TTG +    1 TGT      =   11 
   0 ATG +    1 TGA +   1 GAT +   0 CAT +   2 ATC +    0 TCA      =    4 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   1 AGG +    0 GGA +   0 GAG +   2 CCT +   2 CTC +    0 TCC      =    5 
   3 AGC +    7 GCA +  14 CAG +   1 GCT +   0 CTG +    5 TGC      =   30 
   0 ACG +    1 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    2 CCA +   1 CAC +   0 GGT +   0 GTG +    0 TGG      =    3 
   0 GGC +    0 GCG +   0 CGG +   1 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7300296|gb|AE003719.1|AE003719 Drosophila melanogaster genomic scaffold 142000013386035 section 44 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    13450  ACT *  7    19/21     ACT TCT TCT ACT ACT ACT ACT
    15995  TTA *  7    20/21     TTA TTA TTA TTA TTA TTA TTT
    16026  TTA * 10    27/30     TTA TTA TAT TTA TTA TTA TTA TTA TTA TTT
    26546  CAC *  8    23/24     CAC CAC CAC CAC CAC CAC CAA CAC
    38474  CCT *  8    22/24     CCT CCT ACT CCT CCT ACT CCT CCT
    61510  ACC * 11    30/33     ACC AAC ACC ACC ACC ACC ACC ACC AGC ACC TCC
    64121  GCT *  9    25/27     GCT GCT GCT GCT GCT GCT GCT GCT GTG
    64241  CTG *  8    22/24     CTG ATG TTG CTG CTG CTG CTG CTG
    64490  GCT *  8    22/24     GCT GCT GTT GCT GTT GCT GCT GCT
    64518  CTG *  7    19/21     CTG CTT CTG CTG GTG CTG CTG
    64749  GTT * 11    30/33     GTT GTT GTT GTT ATT GTT GTT GTT ATT ATT GTT
    73952  CTC *  7    19/21     CTC CTC CCC CTG CTC CTC CTC
    95852  AGG *  8    22/24     AGG AGG AGG AGG AGG AGG ACG AGC
    97422  ACA *  7    19/21     ACA AAA ACA ACA ACA ACA ACT
   102740  TGT * 12    33/36     TGT TGT TGT TGT TGT TGT TGT TGT TAT TGT TGT GCT
   105422  TCA *  7    19/21     TCA TCA CCA TCA TTA TCA TCA
   118188  CAA * 10    27/30     CAA CAA CAA CAA CAA TAA CAA GAA CAA GAA
   133292  TCA * 10    27/30     TCA TCA TCA CGA TCA TCA TCA TCA TCA GCA
   133322  GCA *  7    20/21     GCA GCA GCA ACA GCA GCA GCA
   146231  CAC *  9    25/27     CAC CAG CAC CAC CAC AAC CAC CAC CAC
   149858  CAG * 12    34/36     CAG CAG CAG CAG CAG CAG CAA CAG CAG CAG CGG CAG
   150066  CAC *  7    20/21     CAC CAC CAC CAC CAC CAC CGC
   150254  CAG *  8    23/24     CAG CAG CAG CAG CAG AAG CAG CAG
   160941  TTG * 10    29/30     TTG TTG TTA TTG TTG TTG TTG TTG TTG TTG
   163435  GTT *  7    20/21     GTT GTT GTG GTT GTT GTT GTT
   163634  GTT *  8    22/24     GTT GTT GTA GTT GTT GTT GTT GTG
   163781  GTT *  7    19/21     GTT GTT GTT GTT GTT GTG GTG
   163992  TTG *  9    25/27     TTG TTG TTG TAA TTG TTG TTG TTG TTG
   170679  TGT * 15    42/45     TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGA AGT TGT TTT
   172430  GCT *  7    19/21     GCT GCT GGT GCT GCT GCC GCT
   175644  TGC *  7    19/21     TGC TGC TGC TGC TGC TGC CAC
   175944  CAC * 10    27/30     CAC CAC CGA CAC CAC CAC CAC CAC CAC CGC
   178768  TGC *  7    19/21     TGC TGT TGC TGC TGC TGC TGT
   179041  ATC *  9    25/27     ATC ATC ACC ATC ATC ATC ATC ATC ATA
   186232  CTG *  7    20/21     CTG CTG CTG CTG CTG TTG CTG
   186370  CTG *  8    22/24     CTG CTG ATG GTG CTG CTG CTG CTG
   186457  CTG *  8    22/24     CTG CTG CTG ATG CTG TTG CTG CTG
   186521  TGC *  7    20/21     TGC TGC TGC TGC TGC TGC TGG
   186914  GCT *  7    19/21     GCT GCT GCT GCT GAT GGT GCT
   190141  TAT *  7    19/21     TAT TAT TAT TAT TAT TAT TTG
   190648  TTG *  8    22/24     TTG CTG TTG TTG TTG TTG TTG CTG
   193438  CAA * 11    30/33     CAA CAG CAA CAA CAA CAA CAA CAG CAA CCA CAA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       218434 
 Total number of repeats detected..............       42 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTA      2       1       1       0       0       0       0       0       0       0       0       0       0   
  TTG      3       2       1       0       0       0       0       0       0       0       0       0       0   
  TGT      2       0       1       1       0       0       0       0       0       0       0       0       0   
  TGC      3       3       0       0       0       0       0       0       0       0       0       0       0   
  TCA      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GTT      4       3       1       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      4       4       0       0       0       0       0       0       0       0       0       0       0   
  CAA      2       0       2       0       0       0       0       0       0       0       0       0       0   
  CAG      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CAC      4       3       1       0       0       0       0       0       0       0       0       0       0   
  CTG      5       5       0       0       0       0       0       0       0       0       0       0       0   
  CTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   2 TTA +    1 TAT      =    3 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    1 ACA +   2 CAA +   4 GTT +   3 TTG +    2 TGT      =   12 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   1 ATC +    2 TCA      =    3 
   0 AGT +    0 GTA +   0 TAG +   1 ACT +   0 CTA +    0 TAC      =    1 
   1 AGG +    0 GGA +   0 GAG +   1 CCT +   1 CTC +    0 TCC      =    3 
   0 AGC +    1 GCA +   2 CAG +   4 GCT +   5 CTG +    3 TGC      =   15 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   1 ACC +    0 CCA +   4 CAC +   0 GGT +   0 GTG +    0 TGG      =    5 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7300262|gb|AE003718.1|AE003718 Drosophila melanogaster genomic scaffold 142000013386035 section 43 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    55755  GCA *  8    22/24     GCA GCA GCA GCA GCA GCA GTG GCA
   101456  CAG *  8    22/24     CAG CAG CAG CAA CAA CAG CAG CAG
   101513  CAG *  7    20/21     CAG CAG CAG CAG CAG CAG CAT
   117042  AGC *  8    22/24     AGC AGC AGG AGC AGC AGC AGC ATC
   139152  TGC *  8    22/24     TGC TGC CGC TGC TGC TGC TGC TGA
   143357  TGA *  7    19/21     TGA TGA TGA TGA GGT TGA TGA
   175710  ATC * 10    28/30     ATC CCC ATC ATC ATC ATC ATC ATC ATC ATC
   182529  ATT * 11    30/33     ATT ATT ATT ATT ATT ATT ATT ATT ATT ATA TTA
   198476  ACC * 10    27/30     ACC ACC ACT ACC ACC GCC ACC ACC ACC TCC
   211589  CTG *  7    19/21     CTG CTG CTG CTG CTG TTG CTT
   238814  GCC *  7    19/21     GCC GCC GCC GCC GCC GCT GCT
   238840  CAA *  7    19/21     CAA CAA TAA CAA CAA CGA CAA
   242455  CTG *  8    22/24     CTG CTG TTG CTG CTG CTG CTG TTG
   248743  CTT *  7    19/21     CTT CTT CTT CTT TGT CTT CTT
   250236  GCC *  7    19/21     GCC GCC GCT GCC GCT GCC GCC
   250680  TGC *  7    19/21     TGC TGC TGT TGC TGC TGG TGC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       253172 
 Total number of repeats detected..............       16 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  ATC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   1 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   1 CTT +   0 TTC +    0 TCT      =    1 
   0 AAC +    0 ACA +   1 CAA +   0 GTT +   0 TTG +    0 TGT      =    1 
   0 ATG +    1 TGA +   0 GAT +   0 CAT +   1 ATC +    0 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   1 AGC +    1 GCA +   2 CAG +   0 GCT +   2 CTG +    2 TGC      =    8 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   1 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   2 GCC +   0 CCG +    0 CGC      =    2 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7300241|gb|AE003717.1|AE003717 Drosophila melanogaster genomic scaffold 142000013386035 section 42 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    35104  ACA *  7    19/21     ACA ATA ACA ACA ACA ACA ACG
    45761  GAT *  8    23/24     GAT AAT GAT GAT GAT GAT GAT GAT
    48580  TGC *  7    19/21     TGC TGC CAC TGC TGC TGC TGC
    52801  CAG *  8    22/24     CAG CAG CAG CAG CAG CTA CAG CAG
    86530  AGC *  9    25/27     AGC AGC AGC AGC AGC AGC AGA AGC GGC
    89945  TGA *  7    19/21     TGA TGA TGA TGG CGA TGA TGA
   106054  GAT * 10    27/30     GAT GAT GAT GAT GAT GAT GAT GAT GAC AAG
   114685  ACA *  8    22/24     ACA GCA GCA ACA ACA ACA ACA ACA
   138921  CAG *  8    22/24     CAG CAG CAG CAG CAG CAA CAA CAG
   151522  AGC *  7    19/21     AGC AAC AGC AGC AGC AGC CGC
   153128  TTG *  7    19/21     TTG TTG TTG TTG TTA TTG TTC
   182230  TGA *  7    19/21     TGA TGA TGA TGA CGA TGA TCA
   190746  CTG *  7    19/21     CTG CTG CTG CTG CTG CAG TTG
   208843  ATT * 51   139/153    ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATA AAG GTA TTA TTA TAT CAA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       217756 
 Total number of repeats detected..............       14 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATT      1       0       0       0       0       0       0       0       0       0       0       0       1   
  AGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  ACA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CAG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   1 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    2 ACA +   0 CAA +   0 GTT +   1 TTG +    0 TGT      =    3 
   0 ATG +    2 TGA +   2 GAT +   0 CAT +   0 ATC +    0 TCA      =    4 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   2 AGC +    0 GCA +   2 CAG +   0 GCT +   1 CTG +    1 TGC      =    6 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7300211|gb|AE003716.1|AE003716 Drosophila melanogaster genomic scaffold 142000013386035 section 41 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     6667  CCG *  7    19/21     CCG CCG CCG CCT CCG CCT CCG
     6988  CCA *  7    19/21     CCA CCA CCA CCA CCA CCA CAC
     7313  CCA * 10    27/30     CCA CAA CCC CCA CCA CCA CCA CCA CCA CCG
    22073  CAG *  7    19/21     CAG CAG CAG CAA CAT CAG CAG
    64737  ACA *  7    19/21     ACA ACC ACA ACC ACA ACA ACA
    98791  ATA *  9    25/27     ATA ATA ATA ATA GCA ATA ATA ATA ATA
    99377  CAA *  7    19/21     CAA CAA CAA CAA CAA CAA CGG
   119790  GCT *  7    19/21     GCT GGA GCT GCT GCT GCT GCT
   119849  TGC *  7    19/21     TGC TGT TGC TGC TGC TGC TGT
   134232  GGA *  7    19/21     GGA GGA GGA CGA TGA GGA GGA
   138345  TTG *  8    22/24     TTG TTG CTG TTG TTG TTG TTG TTT
   170284  GCT *  8    22/24     GCT GCT GCT TCT GCT GCT GCA GCT
   178474  TTG *  7    19/21     TTG CTG TTG TTG TTG ATG TTG
   184903  CCT *  7    19/21     CCT CCT CCT CCT CCT CCA CCG
   193727  TTA *  7    19/21     TTA TTA TTA TTA TTA TTT TTG
   205046  TGC * 11    30/33     TGC TGC TGT TGC TGC TGC TGC TGC CGC TGC TGT
   225199  TGC *  8    22/24     TGC TGC CAC TGC TGC TGC TGC TGC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       225968 
 Total number of repeats detected..............       17 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGC      3       2       1       0       0       0       0       0       0       0       0       0       0   
  GGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCA      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    1 ATA +   0 TAA +   0 ATT +   1 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    1 ACA +   1 CAA +   0 GTT +   2 TTG +    0 TGT      =    4 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    1 GGA +   0 GAG +   1 CCT +   0 CTC +    0 TCC      =    2 
   0 AGC +    0 GCA +   1 CAG +   2 GCT +   0 CTG +    3 TGC      =    6 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    2 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   1 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7300193|gb|AE003715.1|AE003715 Drosophila melanogaster genomic scaffold 142000013386035 section 40 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    10208  TGC * 12    33/36     TGC TGT TGC TGC TGC TGC TGT TGC TGC TGC TGT TGC
   106361  AGC *  7    19/21     AGC AGC AGC AGC AGC AGC AAG
   132736  CTG *  7    20/21     CTG CTG TTG CTG CTG CTG CTG
   132920  TGC *  7    19/21     TGC TGC TGT TGC TGC TGC TGT
   133118  TGC *  8    23/24     TGC TGC TGC TGT TGC TGC TGC TGC
   133220  TGC *  7    19/21     TGC TGC AGA TGC TGC TGC TGC
   133250  TGC * 15    41/45     TGC TGC TGC TCC TGC TGC TGC TGC TGC TGT TGC TGC TGC TGC AGA
   134442  TGT *  7    19/21     TGT TGT TGT AGT TGC TGT TGT
   146623  GCT *  7    19/21     GCT GCC GCT GCC GCT GCT GCT
   150311  ACA * 11    30/33     ACA ACA ACA ACA ACA ACA GCA ACA AGA ACA GCA
   178485  AAT *  7    19/21     AAT TAT AAT AAT TAT AAT AAT
   202598  GAT *  7    20/21     GAT GAT GAT GAT GAT GAT TAT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       223098 
 Total number of repeats detected..............       12 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      5       3       1       1       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    1 ACA +   0 CAA +   0 GTT +   0 TTG +    1 TGT      =    2 
   0 ATG +    0 TGA +   1 GAT +   0 CAT +   0 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   1 AGC +    0 GCA +   0 CAG +   1 GCT +   1 CTG +    5 TGC      =    8 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7300166|gb|AE003714.1|AE003714 Drosophila melanogaster genomic scaffold 142000013386035 section 39 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     2440  GAG *  7    19/21     GAG CAG GAG GAG GAG GAG GAC
    23627  AGC * 12    33/36     AGC AAC ATC AGC AGC AGC AGC AGC AGC CGC AGC AGC
    23775  TGC *  7    20/21     TGC TGC TGC TGC TGC TGC TGG
    24753  TGC * 10    28/30     TGC TGC TGA TGC TGC TGC TGA TGC TGC TGC
    24786  TGC *  8    22/24     TGC TCT TGC TGC TGC TGC TGC TGC
    26401  TGT *  8    22/24     TGT TGT TGT TGT TGT TGT TGG TGG
    72649  TGG *  9    25/27     TGG CGG TGG TGG TGG TGG TGG TGG TGC
    90916  CCG * 11    30/33     CCG CCG CCG CCG CAG CCG CTG CCG CCG CCG CCT
   118032  AGC *  8    22/24     AGC TGC AGC AGC AGC AGC AGC AAC
   118119  GCA *  8    22/24     GCA GCA GCA GCA GCA TCA GCA GCG
   118332  GCA * 10    27/30     GCA GCA GCA GCA GCA GCA GCA ACA GCA ACC
   127714  CCG *  7    19/21     CCG CCA CCG CCG CCA CCG CCG
   135700  TTC *  7    19/21     TTC TTC TTC TTC TTC TTT ATC
   142289  CAA *  8    22/24     CAA CAC CAA CAA CAG CAA CAA CAA
   142837  AAT *  8    22/24     AAT AAT AAT AAT TAT AAT AAA AAT
   161177  GTT *  8    22/24     GTT GTT GTT GCT GCT GTT GTT GTT
   166275  ATT *  7    19/21     ATT ATT ATT ATT ATT TTT ATG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       231403 
 Total number of repeats detected..............       17 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      2       1       1       0       0       0       0       0       0       0       0       0       0   
  TTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      3       2       1       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCG      2       1       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   1 ATT +   0 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   1 TTC +    0 TCT      =    1 
   0 AAC +    0 ACA +   1 CAA +   1 GTT +   0 TTG +    1 TGT      =    3 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   1 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   2 AGC +    2 GCA +   0 CAG +   0 GCT +   0 CTG +    3 TGC      =    7 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    1 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   2 CCG +    0 CGC      =    2 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7300133|gb|AE003713.1|AE003713 Drosophila melanogaster genomic scaffold 142000013386035 section 38 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

      775  CAG *  8    22/24     CAG CAG CAG CAG CAG CAG CAT CAA
    25147  GCA *  7    19/21     GCA GCA GCA GTA GCA GCA GGA
    34305  TGC *  7    19/21     TGC TGC TGC TGC TGC TGT TGT
    34432  GCT *  7    19/21     GCT GCT GCT GTT GTT GCT GCT
    39007  AGC *  7    19/21     AGC AGC AGC AGC AGC AGG CGC
    47222  CGT *  8    22/24     CGT CGT CGT CGT CGT TGT CGT TGT
    59204  TCA *  7    19/21     TCA TCG TCA TCA TCA TCA GCA
    64679  CAC *  9    25/27     CAC CAT CAC CAA CAC CAC CAC CAC CAC
    66106  AAT *  7    20/21     AAT AAC AAT AAT AAT AAT AAT
   144265  AGC * 12    34/36     AGC AGT AGC AGC AGC AGC AGC AGC AGC AGC AGC AAC
   169422  TCA *  8    22/24     TCA TCA TCA TCA TCA TCA TGA TGA
   171580  AAC *  8    22/24     AAC AAC AGC AAC AAC AAC AGC AAC
   171615  CAG *  8    22/24     CAG CAG CAA CAG CAG CAG CAG CAA
   178450  CTC *  8    22/24     CTC CGC CTC CTC CTA CTC CTC CTC
   199342  GTT *  7    19/21     GTT GTT GTT GTT GGT GTT GTG
   200711  TAT *  8    23/24     TAT TAT TAT TAT TAT TGT TAT TAT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       225844 
 Total number of repeats detected..............       16 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      2       1       1       0       0       0       0       0       0       0       0       0       0   
  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    1 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    0 ACA +   0 CAA +   1 GTT +   0 TTG +    0 TGT      =    2 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    2 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   1 CTC +    0 TCC      =    1 
   2 AGC +    1 GCA +   2 CAG +   1 GCT +   0 CTG +    1 TGC      =    7 
   0 ACG +    0 CGA +   0 GAC +   1 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   1 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7300108|gb|AE003712.1|AE003712 Drosophila melanogaster genomic scaffold 142000013386035 section 37 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    24343  AGC * 10    27/30     AGC AGC AGC AAC TGC AGC AGC AGC AGC AAC
    25676  CAG * 13    36/39     CAG CAG CAG CAG CAG CAG CAG CAT CAG CAG AAT CAG CAG
    26758  ACA *  8    22/24     ACA ACC ACA ACA ACA ACA ACC ACA
    43136  CAG *  7    19/21     CAG CAG CAA CAT CAG CAG CAG
    43440  CAA *  7    19/21     CAA CAA CAA GAG CAA CAA CAA
    46725  TCA *  8    22/24     TCA TCA TTA TCA TCA TCA TCA CCA
    54956  TCG *  8    22/24     TCG TCG TCG TCG TCG TCG TCT TCT
    71365  GCA *  8    22/24     GCA ACA GCA GCA GCA GCA GCA GCT
    77129  GCA *  7    19/21     GCA GCA GTA GCA GCA GCG GCA
    90334  AGC * 13    36/39     AGC AGC AGC AGC AGC AGC AGC AGC AGC AGC AAT TGC AGC
    91427  TGC *  8    22/24     TGC TGC TGC TGC TGC TGT TGT TGC
    96693  CCA *  7    20/21     CCA CCA CCA CCA CCA CCA CCC
    99510  AGC *  7    19/21     AGC AGC AGC AGC AGC AGA AGA
   100774  CTG *  7    19/21     CTG CTG CTA CTG CTG CTG TTG
   102572  TGC *  7    20/21     TGC TGC TGC TGC TGC TGC CGC
   102780  GCT *  7    19/21     GCT GCT TCA GCT GCT GCT GCT
   105746  ACA *  8    22/24     ACA ACA ACG ACA ACA GCA ACA ACA
   112935  AGG *  7    19/21     AGG AGG GGG AGG AGG ATG AGG
   113126  AAC *  7    19/21     AAC GAC AAC TAC AAC AAC AAC
   113425  AAT *  7    19/21     AAT AAT AAA AAT AAT AAT AAG
   115763  CGT *  7    19/21     CGT CGT CGT CGT CGG CGT CAT
   119638  AGA *  7    19/21     AGA AGA AGA AGA AGC AGA AGC
   120398  GCT *  7    19/21     GCT GCT GCT GCT GCC TCT GCT
   121371  TGT *  7    19/21     TGT TGT TGT TGC TGG TGT TGT
   129930  CAG *  7    19/21     CAG CAG TAG CAG AAG CAG CAG
   133848  TGT *  7    19/21     TGT TGT TGT CGT TGT TGT TGC
   138202  TGC *  7    19/21     TGC TGC TGT TGC TGC TGC TGT
   138410  ATC *  7    20/21     ATC ATC ATC ATC ATC ATC AGC
   142233  GCA * 12    33/36     GCA GCA GCA GCA GCC GCA GCA GCA GCA GCG GCG GCA
   142296  CAG *  8    23/24     CAG CAG CAG CAG CAG CAG CAG CAA
   158681  CAA *  7    19/21     CAA CAA CAA CAA CAA CAG CAG
   182839  TGA *  7    19/21     TGA TGA CGA TGT TGA TGA TGA
   186245  TTA *  7    19/21     TTA TTA TTA TTT TTA TTA TTT
   190282  GAC *  8    22/24     GAC GAC GAC AAC GAC GAC GAC GAG
   204224  AAT *  7    19/21     AAT AAT TAA AAT AAT AAT AAT
   212038  ACC *  7    19/21     ACC ACC ACC GCC CCC ACC ACC
   220082  TCA *  8    22/24     TCA TCG TCA TCA TCA TCA TCA TGA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       226200 
 Total number of repeats detected..............       37 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      3       1       1       1       0       0       0       0       0       0       0       0       0   
  ACA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  ACC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGC      3       3       0       0       0       0       0       0       0       0       0       0       0   
  TCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      3       2       1       0       0       0       0       0       0       0       0       0       0   
  GCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAG      4       3       0       1       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   2 AAT +    0 ATA +   0 TAA +   0 ATT +   1 TTA +    0 TAT      =    3 
   0 AAG +    1 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    1 
   1 AAC +    2 ACA +   2 CAA +   0 GTT +   0 TTG +    2 TGT      =    7 
   0 ATG +    1 TGA +   0 GAT +   0 CAT +   1 ATC +    2 TCA      =    4 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   1 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   3 AGC +    3 GCA +   4 CAG +   2 GCT +   1 CTG +    3 TGC      =   16 
   0 ACG +    0 CGA +   1 GAC +   1 CGT +   0 GTC +    1 TCG      =    3 
   1 ACC +    1 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7300075|gb|AE003711.1|AE003711 Drosophila melanogaster genomic scaffold 142000013386035 section 36 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    32047  CTG *  7    19/21     CTG CTG CTG CAG CTG CTC CTG
    50228  AAT *  7    19/21     AAT AAT AAT AAT AAT AAT CTT
    57886  GTC *  8    22/24     GTC GTC GTG GTC GTC GTC GTC GTT
    64195  TGC * 10    27/30     TGC TGC TGC TGC TGC TGC TGT TGT TGC GGC
    89276  TGC *  7    19/21     TGC TGT TGC TGC TGC GGC TGC
   115183  AAT *  8    22/24     AAT ACT AAC AAT AAT AAT AAT AAT
   115380  GCA *  7    19/21     GCA GCA GCA ACA GCA TCA GCA
   115668  GGC *  7    19/21     GGC AGC GGC GGC GGC AGC GGC
   115930  CAG * 10    27/30     CAG CAA CAG CAG CAG CAG CAG CAG CAA CAA
   118676  CAG *  7    19/21     CAG TTG CAG CAG CAG CAG CAG
   119831  CAG * 10    27/30     CAG CAG CAG CAC CAT CAG CAG CAG CAG CAA
   119876  CAG * 11    30/33     CAG CAG CAG CAA CTG CAG CAG CAG CAG CAG CAA
   122892  CAG *  7    19/21     CAG TAC CAG CAG CAG CAG CAG
   123098  GCA *  7    20/21     GCA GCA GCA TCA GCA GCA GCA
   123193  ACA *  9    25/27     ACA ATA ACA ATA ACA ACA ACA ACA ACA
   123230  CAA *  8    22/24     CAA CAA CAA CAA CAA CAA CAA TAG
   123312  AGC *  7    19/21     AGC AGC AGC AGC AAC AGC GGC
   123387  GCA *  7    19/21     GCA GCA GCA GCA GCA GCG GCG
   123687  CAG *  7    19/21     CAG CAA CAA CAG CAG CAG CAG
   123795  CAG * 10    28/30     CAG CAG CAG CAG CAA CAG CTG CAG CAG CAG
   135132  CAG *  7    20/21     CAG CAG CAG CAG CAG CAG CTG
   136662  GCA * 12    33/36     GCA GCA GCA GCA GCA GCA ACA GCA ACA GCA ACA GCA
   136829  AGC *  7    19/21     AGC AGC AGG AGC AGC AGC AAC
   137547  CAG * 14    38/42     CAG CAG CAG CAG CAC CAG CAG CAG CAG CAT CAG CAG CAA CAC
   142660  GAT *  8    22/24     GAT GAC GAC GAT GAT GAT GAT GAT
   156302  CCT *  8    23/24     CCT CCT CCT CCT CCT CCT CCT CCA
   160138  GCA * 11    30/33     GCA GCA GCA GCA GCA GCA GCA ACA GCA ACA ACA
   160172  CAG *  9    25/27     CAG CAA CAG CAG CAG CAG CAG CAG CAA
   189822  GTT *  7    19/21     GTT GTT GTT GTT GTT GTT GCG
   227605  GCA *  9    25/27     GCA GCA GCA GCA GCA GCA ACA GCA ACA
   234702  TGC *  7    19/21     TGC CGT TGC TGC TGC TGC TGC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       236427 
 Total number of repeats detected..............       31 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  AGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      3       2       1       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      6       4       2       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG     10       5       4       1       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   2 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    1 ACA +   1 CAA +   1 GTT +   0 TTG +    0 TGT      =    3 
   0 ATG +    0 TGA +   1 GAT +   0 CAT +   0 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   1 CCT +   0 CTC +    0 TCC      =    1 
   2 AGC +    6 GCA +  10 CAG +   0 GCT +   1 CTG +    3 TGC      =   22 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   1 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   1 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7300041|gb|AE003710.1|AE003710 Drosophila melanogaster genomic scaffold 142000013386035 section 35 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    19270  TGC *  9    25/27     TGC TGC TGT TGC TGC TGC TGC TGC TGT
    52351  CAG * 10    27/30     CAG GAG CAG CAG CAG AAG CAG CAG CAG CTG
    64243  TGA *  8    22/24     TGA TGA TGA TGA TGA CAA TGA TGA
    64928  GAT * 11    30/33     GAT GAT GAC GAT GAT GAT GAT GAT GAT GAC GAG
   151457  GAT *  8    22/24     GAT GAT GAT GAT GAT GAT GAC GTT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       224939 
 Total number of repeats detected..............       5 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  TGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CAG      1       0       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    0 
   0 ATG +    1 TGA +   2 GAT +   0 CAT +   0 ATC +    0 TCA      =    3 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    0 GCA +   1 CAG +   0 GCT +   0 CTG +    1 TGC      =    2 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7300026|gb|AE003709.1|AE003709 Drosophila melanogaster genomic scaffold 142000013386035 section 34 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    30920  AGC * 14    39/42     AGC ATC AGC AGC AGC CGC AGC AGC AGC AGC AGC CGC AGC AGC
    83068  ATG *  8    22/24     ATG AGG ATG ATG ATT ATG ATG ATG
    97629  CTG *  7    19/21     CTG CTG ATG CTG ATG CTG CTG
   130081  GCT *  8    22/24     GCT GCT GGT GCT GTT GCT GCT GCT
   133212  CAG *  7    19/21     CAG CAG CAG CAG CAG CAA CAT
   136440  GAT *  8    22/24     GAT GAT AAT GAT GAT GGT GAT GAT
   214352  CAT * 12    33/36     CAT CAT CAT CAT CAT CAT CAT CAT CGT ACT CAT CAT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       223652 
 Total number of repeats detected..............       7 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       0       0       1       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    0 
   1 ATG +    0 TGA +   1 GAT +   1 CAT +   0 ATC +    0 TCA      =    3 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   1 AGC +    0 GCA +   1 CAG +   1 GCT +   1 CTG +    0 TGC      =    4 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7299964|gb|AE003708.1|AE003708 Drosophila melanogaster genomic scaffold 142000013386035 section 33 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    55568  CAG * 11    30/33     CAG CAG CAG CAA CAG CAA CAG CAG CAG CAG CAT
    55808  CAG *  7    19/21     CAG CAG CAG CAG CAA CAG CAA
    55973  CAG *  8    22/24     CAG CAG CAC CAG CAG CAG CAG CAA
    57116  CAG *  7    20/21     CAG CAA CAG CAG CAG CAG CAG
    97295  AAC *  7    19/21     AAC AGC GAC AAC AAC AAC AAC
    98951  CAA *  8    22/24     CAA CAA CTA CAA CAA CAA CAA CCA
    99751  ATG *  7    19/21     ATG ACG ATG ATA ATG ATG ATG
   119759  GGT *  8    22/24     GGT GGC AGT GGT GGT GGT GGT GGT
   121350  CCT *  7    19/21     CCT CCT CCT CCT CCG CCT CCG
   125386  GCA *  7    19/21     GCA GCA ATA GCA GCA GCA GCA
   126516  AAT * 10    27/30     AAT AAT AAT AAT AAT AAT AAC AAC AAT AAC
   178320  CAG * 10    27/30     CAG CAG CAC CAG CAG CAG CAG CAG CAG AAA
   182695  CAT *  7    19/21     CAT CAT CAC CAG CAT CAT CAT
   185826  GGA *  7    19/21     GGA GGA AGC GGA GGA GGA GGA
   185850  GGC *  8    22/24     GGC GTC GGC GGC GGC GGC GGC GGT
   191390  GCA *  7    20/21     GCA GCA GCA GCA ACA GCA GCA
   191918  CTA *  8    23/24     CTA CTA CTA CTA CTA CTA CTA CTT
   194041  CAG *  8    23/24     CAG CAG CAA CAG CAG CAG CAG CAG
   196825  GTT *  7    19/21     GTT GTT GTT CTT GTT GTT GTA
   197815  AAC *  7    19/21     AAC AAC AAA AAC AAC AAC AGC
   197969  ACT *  7    20/21     ACT ACT ACT ACT ACT AAT ACT
   201673  GCA * 12    34/36     GCA GCA GCA ACA GCA ACA GCA GCA GCA GCA GCA GCA
   201755  CAG *  8    22/24     CAG CAG CAG CAG CAA CAG CAG CAA
   202246  GCA *  8    22/24     GCA GCA GCA GCA GCA GCA GCC ACA
   202470  TTA *  7    19/21     TTA TTA TTA CTA TTA TGA TTA
   216338  CAG *  8    22/24     CAG CAG CAA CAG CAG CAA CAG CAG
   216365  CAG *  7    19/21     CAG CAG CAG CAG CAG CAA CAA
   216542  CAG * 14    39/42     CAG CAG CAA CAG CAG CAG CAG CAG CAG CAG CAG CAG CAT CAA
   216631  GCA * 12    33/36     GCA ACA GCA GCA GCA GCA GCA GCA ACA ACA GCA GCA
   222081  TCA *  7    19/21     TCA TAA TCA TCA TCA TCG TCA
   224853  TGT *  7    19/21     TGT GAT TGT TGT TGT TGT TGT
   225751  GTT * 10    28/30     GTT GTT GCT GCT GTT GTT GTT GTT GTT GTT
   226799  TGC *  7    20/21     TGC TGT TGC TGC TGC TGC TGC
   226835  TGC *  8    22/24     TGC TGC TGC TGC TGA TGC TGC AGC
   226992  GCT *  7    19/21     GCT GCT GCT GCT GCT GCT GGG
   227027  TGC * 13    36/39     TGC TGC TGC TGC TGC TGG TGT TGC TGC TGC TGC TGC TGG
   232407  CAT *  8    22/24     CAT CAT CAT CAT CAT CAT CGG CAT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       235414 
 Total number of repeats detected..............       37 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  AAC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      3       2       0       1       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      5       3       2       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAG     10       7       2       1       0       0       0       0       0       0       0       0       0   
  CTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   1 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   2 AAC +    0 ACA +   1 CAA +   2 GTT +   0 TTG +    1 TGT      =    6 
   1 ATG +    0 TGA +   0 GAT +   2 CAT +   0 ATC +    1 TCA      =    4 
   0 AGT +    0 GTA +   0 TAG +   1 ACT +   1 CTA +    0 TAC      =    2 
   0 AGG +    1 GGA +   0 GAG +   1 CCT +   0 CTC +    0 TCC      =    2 
   0 AGC +    5 GCA +  10 CAG +   1 GCT +   0 CTG +    3 TGC      =   19 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   1 GGT +   0 GTG +    0 TGG      =    1 
   1 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7299945|gb|AE003707.1|AE003707 Drosophila melanogaster genomic scaffold 142000013386035 section 32 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    64788  GAT *  7    19/21     GAT GAT GAT GAT GAT GAT GGC
   120753  TAA *  7    19/21     TAA TAA TAA TAA TAT TAA TAT
   168309  GTT *  8    22/24     GTT GTT GTT GTT GTT GTT GTG GTA
   168341  TGT *  7    19/21     TGT TGT TGT TGT TGT GGT AGT
   168368  TGT *  7    19/21     TGT TGT TGT TGT TGT GGT AGT
   168395  TGT *  7    19/21     TGT TGT TGT TGT TGT GGT AGT
   168449  TGT * 10    27/30     TGT TGT TGT TGT TGT TGT TGT CGT AGT AGT
   179000  AAC *  7    19/21     AAC AAC AGC AGC AAC AAC AAC
   201623  AAT *  8    22/24     AAT AAT AAT AAT AAT ATC AAT AAT
   205015  AGT *  9    25/27     AGT AGC AGT AGT AGT AGT AGT AGT AAT
   207736  TTG *  8    22/24     TTG TTG TTG TTG TTG TTG ATT TTG
   222019  GCA *  8    23/24     GCA GCA GCA GCA GCA GCA GCA ACA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       229655 
 Total number of repeats detected..............       12 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      4       3       1       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   1 TAA +   0 ATT +   0 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    0 ACA +   0 CAA +   1 GTT +   1 TTG +    4 TGT      =    7 
   0 ATG +    0 TGA +   1 GAT +   0 CAT +   0 ATC +    0 TCA      =    1 
   1 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    1 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    1 GCA +   0 CAG +   0 GCT +   0 CTG +    0 TGC      =    1 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7299915|gb|AE003706.1|AE003706 Drosophila melanogaster genomic scaffold 142000013386035 section 31 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

      797  TTG *  7    19/21     TTG TCG TTG TTG TTG TTG CTG
     5956  AGC *  7    19/21     AGC AGC AGT CGC AGC AGC AGC
    10091  TGT *  8    22/24     TGT TGT TGT TGT TGC TGT TGT TGA
    14241  GTT *  8    22/24     GTT GTT GTT GTT GTT GTT GTT TTC
    14449  AAC *  7    20/21     AAC AAC AAC AAC AAC AAC AAG
    19386  ATA *  7    20/21     ATA ATA ATA ATA ATA ATA ATT
    19833  TGC *  7    19/21     TGC TGC TGC AGC TGC TGC TGA
    24924  GAG *  7    19/21     GAG GAG GAG CAG CAG GAG GAG
    28960  AAC *  7    19/21     AAC AAC AAC AAC AAC AAC AGT
    46910  GCA *  7    19/21     GCA GCA GCA GCA ACA GCA ACA
    50110  CAT *  7    19/21     CAT CAT CAT CTC CAT CAT CAT
    61835  GCA *  9    25/27     GCA GCA GCA GCA GTA GCA GCA GCA ACA
    68872  ATC * 10    27/30     ATC ATC ATC ATC ATC ATC ATC ATT ATT AGC
    74985  CAC *  7    19/21     CAC CAC CTG CAC CAC CAC CAC
    78983  CAA *  7    19/21     CAA AAA CAA CAA CAA CAA CAG
   104253  TGC *  7    20/21     TGC TGC TGC TGC TGT TGC TGC
   107211  CTG *  7    20/21     CTG CGG CTG CTG CTG CTG CTG
   107677  TCC *  8    22/24     TCC TCC TCC CCG TCC TCC TCC TCC
   113427  GCT *  9    25/27     GCT GCT GTT GCT GCG GCT GCT GCT GCT
   117233  TGT *  7    19/21     TGT TGT TGA TGT GGT TGT TGT
   135589  TAA *  7    19/21     TAA TAA TAA TAA CAA TAA TAT
   146373  CTG * 14    38/42     CTG CTG CTG CTG CTG CTA CTG CTG CTG CGG CTG CTG CTG CCC
   167014  CAG *  7    19/21     CAG CAG CAA CAA CAG CAG CAG
   182282  GAG *  7    20/21     GAG GAG GGG GAG GAG GAG GAG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       254987 
 Total number of repeats detected..............       24 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  ATA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      2       1       0       1       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    1 ATA +   1 TAA +   0 ATT +   0 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   2 AAC +    0 ACA +   1 CAA +   1 GTT +   1 TTG +    2 TGT      =    7 
   0 ATG +    0 TGA +   0 GAT +   1 CAT +   1 ATC +    0 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   2 GAG +   0 CCT +   0 CTC +    1 TCC      =    3 
   1 AGC +    2 GCA +   1 CAG +   1 GCT +   2 CTG +    2 TGC      =    9 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   1 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7299886|gb|AE003705.1|AE003705 Drosophila melanogaster genomic scaffold 142000013386035 section 30 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    15233  ATG *  7    19/21     ATG ATG ATG ACG ATG ATG ATT
    22295  CTG * 10    27/30     CTG CTG CTG ATG CTG CTG CTG CTG CTG GGG
    24852  TGT *  7    19/21     TGT TGT TGT AGT GGT TGT TGT
    28191  CAG * 10    27/30     CAG CAA CAG CAA CAG CAG CAG CAG CAG CGG
    49082  TGC *  7    20/21     TGC TGC TGC TGC TGC TCC TGC
    64916  CCT *  8    22/24     CCT CCT CCT CCT CCT CCT CAT CCG
    96393  TGT *  8    22/24     TGT TGT TGT TGT TGT TGT TGT TTC
   115869  ACG *  7    20/21     ACG ACG ACG ACG ACG ACG GCG
   143783  AAC *  8    22/24     AAC AAC AAC AAC AAC AGC AGC AAC
   146175  GTG *  7    19/21     GTG ATG GTG GTG GTA GTG GTG
   146840  GCT *  7    19/21     GCT GCT GCT GCT GCT CAT GCT
   147259  TCC * 12    33/36     TCC TCC TCC TCC TCC TCC TCC TCT TCC TCC ACG TCC
   165062  TTG *  7    19/21     TTG TTG TTG TTG TTG TTG AAG
   168409  TGC * 10    27/30     TGC TGC TGC TGC TGC GGC TGT TGC TGC GGC
   168448  TGC *  7    19/21     TGC TGT TGC GGC TGC TGC TGC
   183016  GGA *  7    20/21     GGA GGA GGA TGA GGA GGA GGA
   211220  ACA *  8    23/24     ACA ACA ACA ACA ACT ACA ACA ACA
   230663  AGT * 10    28/30     AGT AGT AGT TGT AGT AGT AGT AGT AGT TGT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       232744 
 Total number of repeats detected..............       18 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGC      3       2       1       0       0       0       0       0       0       0       0       0       0   
  TCC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CTG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    1 ACA +   0 CAA +   0 GTT +   1 TTG +    2 TGT      =    5 
   1 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    1 
   1 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    1 
   0 AGG +    1 GGA +   0 GAG +   1 CCT +   0 CTC +    1 TCC      =    3 
   0 AGC +    0 GCA +   1 CAG +   1 GCT +   1 CTG +    3 TGC      =    6 
   1 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   1 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7299861|gb|AE003704.1|AE003704 Drosophila melanogaster genomic scaffold 142000013386035 section 29 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     7107  TGC *  7    19/21     TGC TAC TGC TAC TGC TGC TGC
     7309  CTG *  7    19/21     CTG CTG CAG CTG TTG CTG CTG
     7416  GCT *  7    19/21     GCT GCT GCT GTT GCT GTT GCT
     8692  CTG *  8    22/24     CTG CTG CTG CTG TTG ATG CTG CTG
    19001  GTT *  7    19/21     GTT GTT GTT GTT GTT GCT GCT
    22681  CAT *  7    19/21     CAT CGT CAT CAT CAT CAT CAC
    28210  CAG *  7    19/21     CAG CAG CAG CAG AAG CAG CGG
    29311  CGT *  8    22/24     CGT TGT CGT CGC CGT CGT CGT CGT
    40575  CAG * 10    27/30     CAG CAG CAG CAG TAG CAG CAG CAG CAG TGG
    57883  CAG *  7    19/21     CAG CAG CAG CAG CAG CAG GAT
    59531  ATA * 10    27/30     ATA ATA ATG ATA ATA ATA ATA ATA AAA ACA
    61831  CTG *  8    22/24     CTG CTG CCG CTG ATG CTG CTG CTG
    61995  GCT *  7    19/21     GCT GTT GCT GCA GCT GCT GCT
    62996  GCT *  7    19/21     GCT GCT GCT GAT GCC GCT GCT
    70208  CCT *  8    23/24     CCT CCT CCT CCT CCT CCT CTT CCT
    80521  AAT *  7    19/21     AAT AAT AAT AAT AAT AAT GAA
    84274  TGC *  7    19/21     TGC TGC CAC TGC TGC TGC TGC
    84622  CTG *  8    22/24     CTG CTG CTG CGG CTG CTG ATG CTG
    84895  CTG * 14    38/42     CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG TTG ATG ATG ATG
    84962  TGC *  8    22/24     TGC TGC TGC TGC TGC TGT TGT TGC
   109579  TTG *  7    19/21     TTG TTG CTG TTG CTG TTG TTG
   109965  TGC * 10    27/30     TGC TGC TGT TGC TGC TGC TGC TGC TGC TAT
   115754  GCA * 13    36/39     GCA GCA GCA GCA GCA GCA GCA GCA GCA CTC GCA GCA GCA
   119011  CAA * 17    46/51     CAA CAA CAA CAA CAA AAA CAA CAA CAA CAA CAA CAA CAA CAG CAG AAA CAT
   130011  GTT *  7    19/21     GTT GTT GTT GCT GTT GCT GTT
   139158  CTG *  7    19/21     CTG CTG TTT CTG CTG CTG CTG
   143983  GAT *  8    22/24     GAT GAT GAT GAT TAT GAT GAT GAC
   147009  CAT *  8    23/24     CAT CAT CAT CAT CAT CAT CAT CAA
   149146  GTG *  7    19/21     GTG GTG ATG ATG GTG GTG GTG
   151219  TGC * 14    38/42     TGC TGC TGC TGC TGT TGC TGC TGC TGA TGT TGC TGC TGC TGA
   156237  CTG *  8    22/24     CTG TTG CTG CTG CTG CTG CTG CAG
   156608  CTG *  7    19/21     CTG CTG CTG TTG CTG TTG CTG
   158702  GCA * 10    27/30     GCA GCA GAA GCA GCA GCA GCA GCA TCA GAA
   161321  CAG * 11    30/33     CAG CAG CAG CAG CAG CAG CAG CAG CAT CAG GTG
   167397  TGC *  8    23/24     TGC TGC TGC TGC TGC TGC TGT TGC
   171818  TGC * 10    27/30     TGC TGC TGC TGT TGC TGT TGC TGC TGC AGC
   172394  GCT * 15    41/45     GCT GCT GCT GCT GTT GCT GCT GCT GCT GCT GGT GTT GCT GTT GCT
   182179  ATC *  7    19/21     ATC ATC ATT ATC GTC ATC ATC
   186140  CAA * 10    27/30     CAA CAA CAA CAA CAA CAA CCA CCA CAA AAA
   191183  CAG * 21    57/63     CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAA CAA CCG CAG CAG CAG CAG CAC ACG
   191264  CAG *  7    19/21     CAG CAG CAG CAG CAG CAA CAC
   206426  GCT *  8    22/24     GCT GCT GCT GGT GCT GCT GCT GCA
   208612  GCA * 11    30/33     GCA GCA TCA GCA GCA GCA GCA GCA GCA GAA ACA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       220572 
 Total number of repeats detected..............       43 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  ATC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      7       4       2       1       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      3       0       2       1       0       0       0       0       0       0       0       0       0   
  GCT      5       4       0       1       0       0       0       0       0       0       0       0       0   
  CAA      2       0       1       0       1       0       0       0       0       0       0       0       0   
  CAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAG      6       3       2       0       0       1       0       0       0       0       0       0       0   
  CTG      8       7       0       1       0       0       0       0       0       0       0       0       0   
  CGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    1 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   2 CAA +   2 GTT +   1 TTG +    0 TGT      =    5 
   0 ATG +    0 TGA +   1 GAT +   2 CAT +   1 ATC +    0 TCA      =    4 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   1 CCT +   0 CTC +    0 TCC      =    1 
   0 AGC +    3 GCA +   6 CAG +   5 GCT +   8 CTG +    7 TGC      =   29 
   0 ACG +    0 CGA +   0 GAC +   1 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   1 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7299833|gb|AE003703.1|AE003703 Drosophila melanogaster genomic scaffold 142000013386035 section 28 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    26585  CGT * 10    27/30     CGT CGC CGT TGT CGT CGT CGT CGT CGT CGC
    45976  GCA *  7    20/21     GCA GCA GCA GCA ACA GCA GCA
    46328  GCA * 12    33/36     GCA GCA GCA GCA GCA GCA GCA GCA ACA GCA ACA GCT
    46867  CAG * 10    28/30     CAG CTG CAA CAG CAG CAG CAG CAG CAG CAG
    46917  GCA *  7    19/21     GCA GCA GCA ACA ACA GCA GCA
    58153  GTT * 10    27/30     GTT GTT CTG GTT GTT GTT GTT GTT GTT GTA
    78982  GCT *  7    19/21     GCT GCT GCG GCT GCC GCT GCT
   127657  AGC *  7    19/21     AGC AGA AGC AGG AGC AGC AGC
   142364  TAA *  7    19/21     TAA TAA TAA TAA CAA CAA TAA
   160902  CAG * 10    27/30     CAG CAG CAG CAG AAG CAG CAA CAG CAG TAG
   160947  CAG *  7    19/21     CAG CAG CAA CAG CAG CAG CAA
   181937  CTC *  7    20/21     CTC CTC TTC CTC CTC CTC CTC
   188552  TGG *  8    22/24     TGG AAG TGG TGG TGG TGG TGG TGG
   222084  ACT *  7    19/21     ACT ACT ATT ACT ACT ATT ACT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       225419 
 Total number of repeats detected..............       14 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GCA      3       2       1       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      3       1       2       0       0       0       0       0       0       0       0       0       0   
  CTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CGT      1       0       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   1 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   1 GTT +   0 TTG +    0 TGT      =    1 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   1 ACT +   0 CTA +    0 TAC      =    1 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   1 CTC +    0 TCC      =    1 
   1 AGC +    3 GCA +   3 CAG +   1 GCT +   0 CTG +    0 TGC      =    8 
   0 ACG +    0 CGA +   0 GAC +   1 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    1 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7299815|gb|AE003702.1|AE003702 Drosophila melanogaster genomic scaffold 142000013386035 section 27 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     4595  CAG *  7    19/21     CAG CAG CAG CAG CAG CAG AAA
    17002  ATA *  7    19/21     ATA ATA ATA ATA ATA TAA ATA
    33266  CAT *  9    25/27     CAT CAT CAT CAT CAT TAC CAT CAT CAT
    49246  TCA *  7    19/21     TCA TCA TCA TCA TTA TCA TTA
    58752  TGC * 10    28/30     TGC TGC TGC TGC TGG TGG TGC TGC TGC TGC
    58785  TGC *  7    19/21     TGC TGC TGG TGC TGC TGC AGC
    59065  CGC *  7    19/21     CGC CGC CGC CTC CGC CGC CGG
    64678  TGC *  7    19/21     TGC TGC TGC TGT TGC TGC TGG
    94020  CAG *  7    19/21     CAG CAG CAA CAG CAG CAG CCG
    94320  GCC *  7    19/21     GCC GCC GCC GCT GCT GCC GCC
   110230  GTA * 11    30/33     GTA GTA GTA GTA GTA GTA GTA GTA GTA ATG CTA
   113294  TGT *  7    20/21     TGT TGT TGT TGT TGT TGT TGC
   140823  CTC *  7    19/21     CTC TTC CTG CTC CTC CTC CTC
   159585  TAA * 12    33/36     TAA TAA TAG TAA TCA TAA TAA TAA TAA TAA TAA TAG
   159772  TTG *  7    19/21     TTG TTT TTG TTG TTG TTG TTT
   160261  GTT *  8    22/24     GTT GCT CTT GTT GTT GTT GTT GTT
   160285  ATT *  7    19/21     ATT ATT ATT ATT ATT GTT GTT
   169232  TGC *  7    19/21     TGC TGC TGC TGC TGT TGC AGC
   172845  TGC *  8    22/24     TGC TGT TGC TGC TGC TGC TGC TGT
   172882  GCT * 15    41/45     GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GTG GTG
   173215  GGA * 11    30/33     GGA GGA GGA GGA CGA GGA GGA TGA GGA GGA GGC
   173292  TGC *  7    19/21     TGC TGT TGC TGC TGC TAC TGC
   173537  GCT *  8    22/24     GCT GCT GTT GCT GCT GCT GCT GCA
   173621  TGC *  7    19/21     TGC TGC TGT TGC TGC TGT TGC
   173681  TGC *  7    19/21     TGC TGT TGC TGG TGC TGC TGC
   176668  TTG *  7    19/21     TTG TTG TTG TTG TCG TTG CTG
   180269  GGA *  7    19/21     GGA GAA GGA GGA GGA GGA GGT
   186289  ATT *  7    19/21     ATT ATT ATT ATT ATT ATT AGC
   187217  ACA *  8    22/24     ACA GCA ACA ACA ACA ACA ACA GCA
   194244  CTT *  8    22/24     CTT CTT CTT CTT CTT TTG CTT CTT
   195606  ATT *  7    20/21     ATT ATT ATT ATT ATT ATT AGT
   203129  AGC *  7    19/21     AGC TCC AGC AGC AGC AGC AGC
   207895  AAT *  7    19/21     AAT AAT AAT AAT AAT AAA AAA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       225974 
 Total number of repeats detected..............       33 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATT      3       3       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      8       7       1       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGA      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GCT      2       1       0       1       0       0       0       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    1 ATA +   1 TAA +   3 ATT +   0 TTA +    0 TAT      =    6 
   0 AAG +    0 AGA +   0 GAA +   1 CTT +   0 TTC +    0 TCT      =    1 
   0 AAC +    1 ACA +   0 CAA +   1 GTT +   2 TTG +    1 TGT      =    5 
   0 ATG +    0 TGA +   0 GAT +   1 CAT +   0 ATC +    1 TCA      =    2 
   0 AGT +    1 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    1 
   0 AGG +    2 GGA +   0 GAG +   0 CCT +   1 CTC +    0 TCC      =    3 
   1 AGC +    0 GCA +   2 CAG +   2 GCT +   0 CTG +    8 TGC      =   13 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   1 GCC +   0 CCG +    1 CGC      =    2 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7299778|gb|AE003701.1|AE003701 Drosophila melanogaster genomic scaffold 142000013386035 section 26 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    19080  CTG *  8    22/24     CTG CTG ATG CTG ATG CTG CTG CTG
    38031  TGT *  7    19/21     TGT TGT TGT TGT AGC TGT TGT
    40762  TGT *  8    22/24     TGT TGT TCT GGT TGT TGT TGT TGT
    41288  GTT *  8    22/24     GTT GTT CTT GTT CTT GTT GTT GTT
    49039  CAG *  7    19/21     CAG CAG CCG CAG CAA CAG CAG
    49435  CAG *  8    22/24     CAG CAG CAG CAG CAG CAG CAA CCG
    49473  GCA *  8    22/24     GCA GCA GCA GCA GCA GCA GCA ACC
    49756  CAG *  8    23/24     CAG CAG CAA CAG CAG CAG CAG CAG
    58210  CCA *  8    22/24     CCA CCG CCA CCA CCA CCT CCA CCA
    71258  ATA * 10    27/30     ATA ATA ATA ATA ATA ATA ATA ATA AAA AAG
    72185  TGG * 10    27/30     TGG TGG TGG TGG TGG TGA TGG TGC TGG TGC
    90227  CAG *  9    25/27     CAG CAA CAG CAA CAG CAG CAG CAG CAG
    95951  CTG *  7    19/21     CTG CTG TTG CTG CTG CTG TTG
   112554  CAA *  8    23/24     CAA CAA CAG CAA CAA CAA CAA CAA
   114755  ACA *  8    22/24     ACA AAA ACA ACA ACA ACA ACA ACG
   120888  TAT *  8    22/24     TAT TTT TAT TAT TAT TAT TAT TTT
   130631  GCT *  8    22/24     GCT GCT GCT ACT GCT GCT GCT GCA
   139719  GAT *  7    19/21     GAT GAT GAT GAT GAT GAT GCA
   145713  CAG *  7    19/21     CAG CAG CAA CAA CAG CAG CAG
   145829  GCA *  8    22/24     GCA ACA GCA ACA GCA GCA GCA GCA
   145908  CAG *  8    22/24     CAG CAG CAG CAG CTG CAA CAG CAG
   146874  CAG *  7    19/21     CAG CAG CAA CAG CAG CAG CAA
   155302  TGT *  7    19/21     TGT TGC TGT TGT TGT TGC TGT
   161162  AAC *  7    19/21     AAC AAG TAC AAC AAC AAC AAC
   161187  ACA *  8    22/24     ACA AGA ACA ACA AGA ACA ACA ACA
   166381  CAC *  7    19/21     CAC CAG CAC CAC CAC CAC GAC
   173818  GAC *  7    19/21     GAC GAC GAC GAT GAC GAC GAT
   175132  GAT *  8    22/24     GAT GAT GAT GAT GAC GAC GAT GAT
   186632  TGC *  9    25/27     TGC TGC TGC TGC TGC TGC TGC TGC TTG
   186683  GCA *  7    19/21     GCA GCA GCA GCG TCA GCA GCA
   186815  GCA *  7    19/21     GCA GCA GCA GCA GCA ACA CCA
   187210  AGC *  8    22/24     AGC AAC AGG AGC AGC AGC AGC AGC
   189747  TGC *  8    22/24     TGC TGC TGT GGC TGC TGC TGC TGC
   193144  ATG * 10    27/30     ATG ATG ATG ACG ATG ATG ATG ATG ACG AGG
   196507  AAC *  7    19/21     AAC AAC AAC AAC AAC AAG CAC
   203703  ATT *  8    23/24     ATT ATT ATT ATT ATT ATT ATT ATA
   204773  ATC *  7    20/21     ATC ATC ATC ATC ATC ATC GTC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       208418 
 Total number of repeats detected..............       37 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  ATA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  ATT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  ATC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      3       3       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      4       4       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      7       7       0       0       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    1 ATA +   0 TAA +   1 ATT +   0 TTA +    1 TAT      =    3 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   2 AAC +    2 ACA +   1 CAA +   1 GTT +   0 TTG +    3 TGT      =    9 
   1 ATG +    0 TGA +   2 GAT +   0 CAT +   1 ATC +    0 TCA      =    4 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   1 AGC +    4 GCA +   7 CAG +   1 GCT +   2 CTG +    2 TGC      =   17 
   0 ACG +    0 CGA +   1 GAC +   0 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    1 CCA +   1 CAC +   0 GGT +   0 GTG +    1 TGG      =    3 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7299755|gb|AE003700.1|AE003700 Drosophila melanogaster genomic scaffold 142000013386035 section 25 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    55531  ACA *  7    20/21     ACA ACA ACA ACA AGA ACA ACA
    70735  CCT *  8    22/24     CCT CCA CCT CCT CCT CAT CCT CCT
    96647  ATT *  7    19/21     ATT ATT ATT ATT ATT ATT TAT
   102017  CAG *  7    19/21     CAG CAA CAG CAA CAG CAG CAG
   107083  TGC *  7    19/21     TGC TGC TGC CTC TGC TGC TGC
   117311  TGC *  9    25/27     TGC TGC TGC TGC TGC TGC TGC TGT TGA
   118745  AGC * 18    49/54     AGC AGC AGC AAC AGC AGC AGC AGC AGC AGC AAC AGC AGC ATC AGC AGT TGC AGC
   118801  CAG *  7    19/21     CAG CAA CAG CAG CAG CAA CAG
   126300  TGC *  8    22/24     TGC TGC TGC CGC TGC TGC TGT TGC
   130471  CAG *  7    19/21     CAG CAG CAA CAG GAG CAG CAG
   149903  CTG *  8    22/24     CTG CCG CTG CTG CTG CTG CTG CTC
   150411  CAG *  8    22/24     CAG CAG CAG CAG CAG TAG CAG CAA
   151735  GCC *  8    23/24     GCC GCC GCC GCC GCC GCC GCC GTC
   153001  ATC *  7    20/21     ATC ATC ATC GTC ATC ATC ATC
   165768  AGC *  8    22/24     AGC AGC AGC AGC AGC AGC TGC AAC
   171778  CAG *  7    19/21     CAG CAT CAG CAG CAG CAG CAC
   177907  CTG *  8    22/24     CTG CTG CAA CTG CTG CTG CTG CTG
   186557  TTG *  8    22/24     TTG TTA TTA TTG TTG TTG TTG TTG
   192722  CTG *  7    20/21     CTG CTG CTG CTG CTG CGG CTG
   220345  ACA *  7    19/21     ACA ACA ACA ACA GCA GCA ACA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       229065 
 Total number of repeats detected..............       20 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      2       1       0       0       1       0       0       0       0       0       0       0       0   
  ACA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      3       3       0       0       0       0       0       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      5       5       0       0       0       0       0       0       0       0       0       0       0   
  CTG      3       3       0       0       0       0       0       0       0       0       0       0       0   
  CCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   1 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    2 ACA +   0 CAA +   0 GTT +   1 TTG +    0 TGT      =    3 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   1 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   1 CCT +   0 CTC +    0 TCC      =    1 
   2 AGC +    0 GCA +   5 CAG +   0 GCT +   3 CTG +    3 TGC      =   13 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   1 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7299726|gb|AE003699.1|AE003699 Drosophila melanogaster genomic scaffold 142000013386035 section 24 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     5169  CGC *  8    22/24     CGC CGC CGC CAC CGC CGC CGA CGC
    10348  CAG *  7    19/21     CAG GAG CAG CAG CAG GAG CAG
    17002  GAT *  7    19/21     GAT GAC GAT GAT GAG GAT GAT
    27198  GTT *  7    19/21     GTT GTT GTT ATT GTT GTT GTA
    62431  GCT *  7    19/21     GCT GCT GCT GCT GCT GAT CCT
    62459  CTG *  7    19/21     CTG TTG TTG CTG CTG CTG CTG
    91660  CAG * 10    27/30     CAG CAG CAG CAG CAA CAA CAG CAG CAG CAA
    92201  CAG *  7    19/21     CAG CAA CAG CAG CAG CAG CAA
   197546  CAC *  7    19/21     CAC CAC CAC CAC AAC CAC GAC
   197603  TGG *  8    22/24     TGG TGG TGG TGC TGG TGG CGG TGG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       225691 
 Total number of repeats detected..............       10 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  TGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      3       2       1       0       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   1 GTT +   0 TTG +    0 TGT      =    1 
   0 ATG +    0 TGA +   1 GAT +   0 CAT +   0 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    0 GCA +   3 CAG +   1 GCT +   1 CTG +    0 TGC      =    5 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   1 CAC +   0 GGT +   0 GTG +    1 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    1 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7299688|gb|AE003698.1|AE003698 Drosophila melanogaster genomic scaffold 142000013386035 section 23 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    24353  TTG *  8    22/24     TTG CTG TTG TTG TTG TTG TTT TTG
    28447  CAG *  7    19/21     CAG CAG CAG CAG CAG CAG AAA
    83108  GCA *  7    19/21     GCA GCA GCA GAA GCA GCA GCT
    83138  GCA *  7    19/21     GCA GCT GCA GCG GCA GCA GCA
    84491  AGC *  7    19/21     AGC AAC AGC AGC AGC AGC ATC
    85273  AGC *  7    19/21     AGC TGC AGC AGC AGC AGC AGG
    85581  CAG * 11    31/33     CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG GAT
    90637  CCG *  7    19/21     CCG ACG CCG CCG TCG CCG CCG
    93462  AAC *  8    22/24     AAC AAC AAC AAC AAC AAC AAA AAA
   104023  TCA *  7    19/21     TCA TCA TCA TCA TCA TCG TCT
   104286  GAG * 10    27/30     GAG GAG GAG GAG GAG GAG GAG TAG GCG GCG
   136384  CTG * 12    34/36     CTG CTG CTG CGG CTG CTG CTG CTG CTG CTT CTG CTG
   147913  TGT *  7    19/21     TGT TGT TGT TGT TGT TGC TGC
   156094  CAG * 10    27/30     CAG CAT CAG CAT CAG CAG CAG CAG CAG CAT
   182608  ACC *  8    22/24     ACC ACC ACC ACC ACC ACC GCC GCC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       225299 
 Total number of repeats detected..............       15 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  ACC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAG      3       1       2       0       0       0       0       0       0       0       0       0       0   
  CTG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    0 ACA +   0 CAA +   0 GTT +   1 TTG +    1 TGT      =    3 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    1 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   1 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   2 AGC +    2 GCA +   3 CAG +   0 GCT +   1 CTG +    0 TGC      =    8 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   1 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   1 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7299670|gb|AE003697.1|AE003697 Drosophila melanogaster genomic scaffold 142000013386035 section 22 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    25407  GTT *  7    19/21     GTT GCT GTT GTT GTT GCT GTT
    25742  TTG *  7    19/21     TTG TTG TTG TTG CTG TTG CTG
    29938  AAT *  7    19/21     AAT ACA AAT AAT AAT AAT AAT
    56159  CTG *  8    23/24     CTG CTG CTG CTG CTG CTG CTG CAG
    81131  TTA *  8    22/24     TTA TTA TTA TTA TTA TTA TCA TCA
   152371  TGC *  9    25/27     TGC TGC TAC TGC TGC TGC TAC TGC TGC
   155208  TGC *  8    22/24     TGC TGC TGC TGC TGC TTC TAC TGC
   203724  AGC *  8    22/24     AGC AGC AGC AGC AAC AAC AGC AGC
   207961  CAG *  8    22/24     CAG CAG CAG CAG CGG CAG CGG CAG
   211629  CTG * 11    30/33     CTG CTG CTG ATG CTG CTG CTG CTT CTG CTT CTG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       226860 
 Total number of repeats detected..............       10 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      2       1       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   1 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   1 GTT +   1 TTG +    0 TGT      =    2 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   1 AGC +    0 GCA +   1 CAG +   0 GCT +   2 CTG +    2 TGC      =    6 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7299628|gb|AE003696.1|AE003696 Drosophila melanogaster genomic scaffold 142000013386035 section 21 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    53444  TCC *  7    20/21     TCC TCC TTC TCC TCC TCC TCC
    64484  CTC *  7    20/21     CTC CTC CAC CTC CTC CTC CTC
    67352  CTG * 10    27/30     CTG CTG CTG CTG CTG CTG CTG CCG CTG CCA
    84784  TAA *  8    23/24     TAA TAA TAA TAA TAA TCA TAA TAA
   108482  TGG *  7    19/21     TGG TGG TGA TGG TGG TGG TGC
   109310  AAT *  7    21/21     AAT AAT AAT AAT AAT AAT AAT
   122318  GCT *  7    19/21     GCT GCT ACT GTT GCT GCT GCT
   125137  GAC *  7    21/21     GAC GAC GAC GAC GAC GAC GAC
   129377  GCT *  8    22/24     GCT GCT TCT GCT GCT GCT GCT TCT
   142644  TTG * 12    33/36     TTG TTG TTG TTG TTG TTG TTG TTG CTT TTG CTG TTG
   146706  GGA *  8    22/24     GGA GGA GTA GGA GGA GCA GGA GGA
   147829  CAA *  7    19/21     CAA CAA CAA CAA CAA CAG CCA
   155346  GGC *  7    19/21     GGC GGC GGC GGC GGC GGC GAT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       228143 
 Total number of repeats detected..............       13 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   1 TAA +   0 ATT +   0 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   1 CAA +   0 GTT +   1 TTG +    0 TGT      =    2 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    1 GGA +   0 GAG +   0 CCT +   1 CTC +    1 TCC      =    3 
   0 AGC +    0 GCA +   0 CAG +   2 GCT +   1 CTG +    0 TGC      =    3 
   0 ACG +    0 CGA +   1 GAC +   0 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    1 TGG      =    1 
   1 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7299572|gb|AE003695.1|AE003695 Drosophila melanogaster genomic scaffold 142000013386035 section 20 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    59765  CAT *  8    22/24     CAT CAC CAT CAG CAT CAT CAT CAT
    86523  CAT *  7    19/21     CAT CAT CAA CAT GAT CAT CAT
    91331  CCT *  7    20/21     CCT CCT CCG CCT CCT CCT CCT
    91382  CGG *  7    20/21     CGG CTG CGG CGG CGG CGG CGG
    97393  GCA * 10    27/30     GCA GCG GCG GCA GCA GCA GCA GCA GCA TCA
    97765  GCA *  8    22/24     GCA GCA GCA ACA GCA GCA GCA ACA
   126925  GAT *  8    22/24     GAT GAT GAT GAT TAT GAT TAT GAT
   177123  TTA *  7    19/21     TTA TTA TTT TTA TTA TTA TTT
   179624  AGC *  7    19/21     AGC AGC AGT AGC AGT AGC AGC
   217024  CAC *  7    19/21     CAC CAA CAC CAC TAC CAC CAC
   219430  AGC * 10    28/30     AGC AGC AGC AGC AGC AGC AGC AGC AGG AGA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       225655 
 Total number of repeats detected..............       11 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AGC      2       1       1       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   1 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    0 
   0 ATG +    0 TGA +   1 GAT +   2 CAT +   0 ATC +    0 TCA      =    3 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   1 CCT +   0 CTC +    0 TCC      =    1 
   2 AGC +    2 GCA +   0 CAG +   0 GCT +   0 CTG +    0 TGC      =    4 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   1 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   1 CGG +   0 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7299542|gb|AE003694.1|AE003694 Drosophila melanogaster genomic scaffold 142000013386035 section 19 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    18151  CAG *  7    20/21     CAG CAG GAG CAG CAG CAG CAG
    63969  TGG *  8    22/24     TGG TGG AGG TGG AGG TGG TGG TGG
    66252  GCT * 12    34/36     GCT GCT GCT GCT GCT GCT GCT GCT GCT GCG GCT CCT
    66358  GCA *  7    19/21     GCA GCA GTA GCA ACA GCA GCA
   101824  CTC *  8    23/24     CTC CTC CTC CTC CTC CTT CTC CTC
   109867  CGT *  7    19/21     CGT CGT CGT GGT CGT CGT TGT
   129741  GCA *  7    19/21     GCA GCA GCA ACA TCA GCA GCA
   129776  AGC *  7    19/21     AGC ATC AGC AGC AGC AGC AAC
   147822  GAT *  9    25/27     GAT GAT GAT GAT GAT AAT GAT GAT GAG
   166827  GTG *  7    19/21     GTG GTG GTG GTG CTG GTG GTT
   167841  GAT *  7    20/21     GAT GAT GAC GAT GAT GAT GAT
   218984  AAC *  8    22/24     AAC AAC AAG AAC GAC AAC AAC AAC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       226108 
 Total number of repeats detected..............       12 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    1 
   0 ATG +    0 TGA +   2 GAT +   0 CAT +   0 ATC +    0 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   1 CTC +    0 TCC      =    1 
   1 AGC +    2 GCA +   1 CAG +   1 GCT +   0 CTG +    0 TGC      =    5 
   0 ACG +    0 CGA +   0 GAC +   1 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   1 GTG +    1 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7299506|gb|AE003693.1|AE003693 Drosophila melanogaster genomic scaffold 142000013386035 section 18 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     2598  TCG *  7    19/21     TCG TAG TCG TCG TCC TCG TCG
    12492  GTT *  7    19/21     GTT GTT GTT ATT GTT GTT GCT
    59755  TGC *  8    22/24     TGC TGC TGC TGT TGT TGC TGC TGC
    62143  CGT *  8    22/24     CGT CGT CGT CGC AGT CGT CGT CGT
   117713  GTT *  8    23/24     GTT GTT GTT GTT GTT GTT GAT GTT
   124574  TAT *  7    20/21     TAT TAT TAT TTT TAT TAT TAT
   196223  TTG *  7    19/21     TTG TTG TTA TTT TTG TTG TTG
   199236  GCA *  8    23/24     GCA TCA GCA GCA GCA GCA GCA GCA
   201340  GAT *  7    19/21     GAT GAT GAG GAT GAT GAA GAT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       226496 
 Total number of repeats detected..............       9 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    1 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   2 GTT +   1 TTG +    0 TGT      =    3 
   0 ATG +    0 TGA +   1 GAT +   0 CAT +   0 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    1 GCA +   0 CAG +   0 GCT +   0 CTG +    1 TGC      =    2 
   0 ACG +    0 CGA +   0 GAC +   1 CGT +   0 GTC +    1 TCG      =    2 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7299460|gb|AE003692.1|AE003692 Drosophila melanogaster genomic scaffold 142000013386035 section 17 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     7779  TTG *  8    22/24     TTG TTG TTG TTG TCG TTG TCG TTG
     9101  TCT * 10    27/30     TCT TCG TCT TCT TCT TCT TCA TCT TCT TCC
    19521  TGC *  7    19/21     TGC TGC TCC TGC TGC TTC TGC
    32776  TGC * 11    30/33     TGC TGA TGC TGC TTC TGC TGC TGC TGC TGC TGT
    64376  GGT *  8    22/24     GGT GGT GGT GAT GGT GGT GGC GGT
    67563  GGT *  7    19/21     GGT GGT GGT GGT GTT GGT AGT
    75156  GCT *  8    22/24     GCT GCT GCT GCC GCT GCT GCT TCT
    82521  CAG *  7    19/21     CAG CAG CAG CAG TAG CAG TAG
   113443  TGC *  7    19/21     TGC TGC TGT TGC TGC TGC TGG
   113574  CTG *  9    25/27     CTG CTG CTG CTG CTG TTG TTG CTG CTG
   118440  AGC *  7    19/21     AGC AGC AGC AGC GGC AGC AGG
   126921  GTT *  7    19/21     GTT GTT GAT GTT GTT GTT ATT
   206189  GAC *  8    22/24     GAC GAC GAC GAC GAC GAC GAG GAT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       227817 
 Total number of repeats detected..............       13 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      3       2       1       0       0       0       0       0       0       0       0       0       0   
  TCT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    1 TCT      =    1 
   0 AAC +    0 ACA +   0 CAA +   1 GTT +   1 TTG +    0 TGT      =    2 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   1 AGC +    0 GCA +   1 CAG +   1 GCT +   1 CTG +    3 TGC      =    7 
   0 ACG +    0 CGA +   1 GAC +   0 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   2 GGT +   0 GTG +    0 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7299436|gb|AE003691.1|AE003691 Drosophila melanogaster genomic scaffold 142000013386035 section 16 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     2565  CGT * 10    27/30     CGT CGC CGT CGT CGT CAT CGT CGT CGT CGG
    17915  GCA *  7    19/21     GCA GCA GCA GCA GCA ACA ACA
    27601  ACA *  7    19/21     ACA ACA ACA GCA GCA ACA ACA
    28883  TGC *  9    25/27     TGC TGC TGC TGC TGC TGC TCC TGT TGC
    29085  GCA * 10    27/30     GCA GCA GCA TCA GCA GCA GCA GCA TCA CCA
    35082  GAT *  7    19/21     GAT GCT GAT GCT GAT GAT GAT
    57377  AAT *  7    19/21     AAT AAC AAT AAT AAT AAT AAA
    61714  AGC *  8    22/24     AGC AGC AGA AGC AGC GGC AGC AGC
    71906  TCC *  9    25/27     TCC TCC GCC TCC TCC TCC ACC TCC TCC
    75888  CAG * 12    33/36     CAG CAG CAG CAG CAG CAG CAG CAA CAG CAA CAG CAA
    75955  ACG *  9    25/27     ACG ACG ACG ACG ACG GCG ACG ACG GCG
    77103  GCA *  8    22/24     GCA GCA GCA GCA ACA GCA GCT GCA
    78494  AGC * 10    27/30     AGC AGC AGC AGC AAC AGC AGC AAC AGC AAC
    78526  CAG * 11    30/33     CAG CAG CAG CAG CAA CAG CAG CAG GAG CAA CAG
    79212  GCA *  7    19/21     GCA GCA GCA GCA GCA ACA GAA
    79272  GCA *  8    23/24     GCA GCA GCA GCA GCA ACA GCA GCA
    79915  CAG * 14    38/42     CAG CAG CAG CAA CAG CAG CAG CAA CAG CAA CAG CAG CAG CAA
    80055  ACC *  7    20/21     ACC ACC GCC ACC ACC ACC ACC
    80610  AGT *  7    19/21     AGT AGA AGT AGT AGT AGT GGT
    92752  ACA * 15    41/45     ACA ACA ACA ACA AGA ACA ACA ACA ACA ACA AGA ACA ACA GCA GCA
    94140  AGC * 10    27/30     AGC AGC AGC AGC AGC AGC AGC AGA GGC AGT
    94306  GCA *  8    22/24     GCA GCA GCA GCA CCA GTA GCA GCA
   142237  TCG *  7    20/21     TCG TCG TAG TCG TCG TCG TCG
   145703  CAC *  7    19/21     CAC CAC CAC CAG CAC CAT CAC
   161493  CTG *  8    22/24     CTG CTG CTG CTG CCT CTG CTG CTG
   161731  GCT *  7    19/21     GCT GCT TCT GCT GCT GCC GCT
   166809  GCT *  7    20/21     GCT GCT GTT GCT GCT GCT GCT
   177912  AGC *  8    22/24     AGC AGC AGA GGC AGC AGC AGC AGC
   202820  AGC *  8    22/24     AGC AGC AGT AGC AGC AGC AAC AGC
   210501  TGC * 12    33/36     TGC TGC TGC TTC TGC TGC TTC TGC TGC TCC TGC TGC
   215585  CTG * 10    27/30     CTG CTG CGG CTG CTG CTG CTG CTG TTG CTC
   215884  TGC *  8    22/24     TGC TAC TGC TGT TGC TGC TGC TGC
   215912  TGC *  8    22/24     TGC TGC TGC TGC TGC TTC TGC TGT
   219215  CAA *  7    19/21     CAA CAA CAA CAG CTA CAA CAA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       226775 
 Total number of repeats detected..............       34 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      5       3       2       0       0       0       0       0       0       0       0       0       0   
  ACA      2       1       0       1       0       0       0       0       0       0       0       0       0   
  ACG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      4       3       1       0       0       0       0       0       0       0       0       0       0   
  TCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      6       5       1       0       0       0       0       0       0       0       0       0       0   
  GCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      3       0       2       1       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CGT      1       0       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    2 ACA +   1 CAA +   0 GTT +   0 TTG +    0 TGT      =    3 
   0 ATG +    0 TGA +   1 GAT +   0 CAT +   0 ATC +    0 TCA      =    1 
   1 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    1 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    1 TCC      =    1 
   5 AGC +    6 GCA +   3 CAG +   2 GCT +   2 CTG +    4 TGC      =   22 
   1 ACG +    0 CGA +   0 GAC +   1 CGT +   0 GTC +    1 TCG      =    3 
   1 ACC +    0 CCA +   1 CAC +   0 GGT +   0 GTG +    0 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7299394|gb|AE003690.1|AE003690 Drosophila melanogaster genomic scaffold 142000013386035 section 15 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    20696  GCA * 10    29/30     GCA GCA GCA GCA GCA GCA ACA GCA GCA GCA
    21576  TAT *  7    19/21     TAT TAT TAT TAT TAT GAT TGT
    50121  AGC * 11    30/33     AGC AGC AGC AGC AGC AGC AGC AGC AGC AGG CTC
    93641  TAT *  7    19/21     TAT TAT TAT TAT TAT AAT TTT
   100986  GAT * 10    27/30     GAT GGT GAT GAT GGT GAT GAT GAT GAT GAG
   117665  ACA * 11    30/33     ACA AAA ACA ACA ACG ACA ACA ACA ACA ACA GCA
   159131  CCA *  7    20/21     CCA CCA CCA CCG CCA CCA CCA
   169780  CTG *  9    25/27     CTG CTG CTG GTG CTG CTG CTG CTG TTG
   170140  AGC *  7    19/21     AGC TGC AGC AGC AAC AGC AGC
   177938  CAA *  8    24/24     CAA CAA CAA CAA CAA CAA CAA CAA
   185602  GAT *  7    19/21     GAT GGT GAT GAT GAT GAT GAC
   195892  GCA *  7    19/21     GCA GCT GCA GCA GCG GCA GCA
   198811  GCA *  7    19/21     GCA GCA GGA GCA GCA GGA GCA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       210299 
 Total number of repeats detected..............       13 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AGC      2       1       1       0       0       0       0       0       0       0       0       0       0   
  ACA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GAT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GCA      3       2       1       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    2 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    1 ACA +   1 CAA +   0 GTT +   0 TTG +    0 TGT      =    2 
   0 ATG +    0 TGA +   2 GAT +   0 CAT +   0 ATC +    0 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   2 AGC +    3 GCA +   0 CAG +   0 GCT +   1 CTG +    0 TGC      =    6 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    1 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7299379|gb|AE003689.1|AE003689 Drosophila melanogaster genomic scaffold 142000013386035 section 14 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    11393  GAT *  7    19/21     GAT GGT GAT GAT GAT GAT GTT
    46660  TTG *  9    25/27     TTG TTG TTG TTG TTG TTG TTG CTT TTG
    82057  CTG *  7    19/21     CTG CTT ATG CTG CTG CTG CTG
   110429  CAG *  8    22/24     CAG CAG AAG CAG CAG CAG CAG CAT
   116723  CTG *  7    19/21     CTG CAG CTG CTG CTG TTG CTG
   120527  GTT *  7    19/21     GTT GTT CTT GTT GTT GTT TTT
   145745  TTG *  8    22/24     TTG CTG TTG TTG TTG TTG TTG TTC
   176760  GCA * 10    28/30     GCA GCA GCA GCA GCA GCA GCA GCA GGG GCA
   177255  GCA *  9    26/27     GCA GCA GCA GCA GCA GCA GCA ACA GCA
   177331  CAG *  8    22/24     CAG CAG CAA CAG CAG CAG CAG CAA
   183471  GGT * 10    27/30     GGT GGT GGT GGT GGT GAT GGT GGT GCT GCT
   184947  CAT *  7    19/21     CAT CCT CAT CAT CAT TAT CAT
   202570  AGC *  7    20/21     AGC AGC AGT AGC AGC AGC AGC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       215984 
 Total number of repeats detected..............       13 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GCA      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   1 GTT +   2 TTG +    0 TGT      =    3 
   0 ATG +    0 TGA +   1 GAT +   1 CAT +   0 ATC +    0 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   1 AGC +    2 GCA +   2 CAG +   0 GCT +   2 CTG +    0 TGC      =    7 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   1 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7299341|gb|AE003688.1|AE003688 Drosophila melanogaster genomic scaffold 142000013386035 section 13 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    37912  AAG *  9    25/27     AAG AAG AAG AAG AAG AAG CAG CAG AAG
    71588  CAG *  7    19/21     CAG CAG TGG CAG CAG CAG CAG
   123305  TCC * 11    31/33     TCC TCC TCC TCT TCC TCG TCC TCC TCC TCC TCC
   192357  CAT *  7    19/21     CAT CAT CAT CAT CAT CAT CGG
   192380  TCA * 10    27/30     TCA GCA TCA TCA TCA TCA TCA TCA ACA GCA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       224795 
 Total number of repeats detected..............       5 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TCC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   1 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    1 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    0 
   0 ATG +    0 TGA +   0 GAT +   1 CAT +   0 ATC +    1 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    1 TCC      =    1 
   0 AGC +    0 GCA +   1 CAG +   0 GCT +   0 CTG +    0 TGC      =    1 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7299333|gb|AE003687.1|AE003687 Drosophila melanogaster genomic scaffold 142000013386035 section 12 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     4496  GGA *  7    19/21     GGA GGA GGA GGA GGC GGA GGC
    15609  TAT * 11    31/33     TAT AGT TAT TAT TAT TAT TAT TAT TAT TAT TAT
    46360  ATG *  7    19/21     ATG ATG ATA ATG ATA ATG ATG
    88836  AGC *  8    22/24     AGC AAC AGC AGC AGC AGC AAC AGC
    89711  TGT *  7    19/21     TGT TGC TGT TGT TGC TGT TGT
   101927  TGC *  7    19/21     TGC TGC TGC TTC TGC TGC TGT
   107335  CAA *  7    19/21     CAA CAA CAA CAG GAA CAA CAA
   110673  AAT *  7    19/21     AAT AAT AAT AAT AAT ATA AAT
   117787  GCA * 11    30/33     GCA GCA GCA GCA GCA GCA GCA GCA ACA GCC ACA
   119057  CAC *  8    22/24     CAC CAC CAG CAC CAC CAG CAC CAC
   125077  TAA *  7    19/21     TAA TAA TAA TAA TAA TAG TTA
   126187  TTG *  7    19/21     TTG TTG TTA TTG TTG TTT TTG
   137067  GAT * 17    46/51     GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAC GAT GAG GAT GAC GAC GAA
   141466  AAT * 10    27/30     AAT AAT AAT AAA AAT AAT AAT AAT AAT GTT
   161724  CAG * 10    27/30     CAG CAG CAG CAG CAG CAG CAG CAA CAG TTG
   165827  GCT *  7    21/21     GCT GCT GCT GCT GCT GCT GCT
   177746  CAT *  7    19/21     CAT CAT CAT CAA CAT CGT CAT
   187921  CAT *  8    23/24     CAT CAT CAT CAT CAT CAT CAT CAG
   188896  TCA *  9    26/27     TCA TCA TCA TCA TCA TCA TCA TCA TCT
   194029  CAC * 10    27/30     CAC CAC CAC CAC CAC CAC CAC CAT CGC CCC
   202319  GCT * 12    33/36     GCT GCG GCT GCT GCT GCT GCT GCT GCT TCT GCT TCT
   202981  TGC *  7    19/21     TGC TGT TGC TGC TGC TGT TGC
   203005  TGC *  7    19/21     TGC TGT TGC TGC TGC TGT TGC
   213168  GTT *  8    24/24     GTT GTT GTT GTT GTT GTT GTT GTT
   216210  CAT * 12    33/36     CAT CGG CAT CAT CAT CAT CAT CAT CAT CAT CAT CAG
   217291  AGC *  7    19/21     AGC AGC AGC AGC GAC AGC AGC
   228653  GTT *  7    19/21     GTT GTT GTT GTT GAT GTT CTT
   229250  AAT *  9    25/27     AAT AAT AAT AAT CAT AAT AAT AAT AAA
   248331  CTG * 10    29/30     CTG CTG CTG CTG CTG CTG CTG CTG CTG TTG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       260104 
 Total number of repeats detected..............       29 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      3       2       1       0       0       0       0       0       0       0       0       0       0   
  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      3       3       0       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       0       0       0       1       0       0       0       0       0       0       0       0   
  GTT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GCT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      3       2       1       0       0       0       0       0       0       0       0       0       0   
  CAG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CAC      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CTG      1       0       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   3 AAT +    0 ATA +   1 TAA +   0 ATT +   0 TTA +    1 TAT      =    5 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   1 CAA +   2 GTT +   1 TTG +    1 TGT      =    5 
   1 ATG +    0 TGA +   1 GAT +   3 CAT +   0 ATC +    1 TCA      =    6 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    1 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   2 AGC +    1 GCA +   1 CAG +   2 GCT +   1 CTG +    3 TGC      =   10 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   2 CAC +   0 GGT +   0 GTG +    0 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7299308|gb|AE003686.1|AE003686 Drosophila melanogaster genomic scaffold 142000013386035 section 11 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     9208  AAT *  7    20/21     AAT AAT AAT AAT AAT AAT ATT
    59555  TAT *  7    19/21     TAT TAT GAT TAT TAT TAT GAT
    67170  ACT *  8    22/24     ACT ACA ACT ACT ACT ACT ACT ACA
   102835  AGC *  7    19/21     AGC AGC ACA AGC AGC AGC AGC
   109454  GGT *  7    19/21     GGT GCT GGT GGT GGG GGT GGT
   121149  ATC *  7    20/21     ATC GTC ATC ATC ATC ATC ATC
   127018  CAG *  7    19/21     CAG CAG CAG CAG TAG CAG CAA
   132985  TCA *  7    19/21     TCA TCA TCA TCA TCT TCA TCG
   165816  CTC *  8    22/24     CTC CTC ATC CTC TTC CTC CTC CTC
   166174  TTA *  7    19/21     TTA TTA TTA TTA TTA TTG TTT
   169360  CTT *  7    19/21     CTT CTT CTT CTT CTT CGT TTT
   178237  AGA *  7    19/21     AGA AGA AGA AGG GGA AGA AGA
   204161  GGT * 10    27/30     GGT GGT GGT GGT GGT GGT GCT GGT GGT GCG
   210547  GCA *  7    19/21     GCA GCA GGA GCA GCA GCA GAA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       221927 
 Total number of repeats detected..............       14 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   1 TTA +    1 TAT      =    3 
   0 AAG +    1 AGA +   0 GAA +   1 CTT +   0 TTC +    0 TCT      =    2 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    0 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   1 ATC +    1 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   1 ACT +   0 CTA +    0 TAC      =    1 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   1 CTC +    0 TCC      =    1 
   1 AGC +    1 GCA +   1 CAG +   0 GCT +   0 CTG +    0 TGC      =    3 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   2 GGT +   0 GTG +    0 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7299273|gb|AE003685.1|AE003685 Drosophila melanogaster genomic scaffold 142000013386035 section 10 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     9467  CTT *  7    20/21     CTT CTT CTT CTT CTT CTG CTT
    18185  TAA *  7    20/21     TAA TAA TAA TCA TAA TAA TAA
    20473  CAA *  7    19/21     CAA CAA CAA CAG CAA AAA CAA
    21375  TGC *  8    22/24     TGC TGC CGC TGC TGC TGT TGC TGC
    24575  GCT * 10    27/30     GCT GTT GCT GCT GCT GCC GCT GCT GCT GCA
    24809  CAC *  7    20/21     CAC CAC CAC CAT CAC CAC CAC
    25153  GCA *  7    19/21     GCA ACA GCA GCA GCA GCA ACA
    27178  GGA *  7    20/21     GGA GGA GGA GGA TGA GGA GGA
    30024  AAC *  8    22/24     AAC AAC AAC AAC AAC AAC AGC GAC
    38977  TGT *  7    19/21     TGT TGC TGT TGC TGT TGT TGT
    50677  GCA * 12    34/36     GCA GCA GCG GCA GCA GCA ACA GCA GCA GCA GCA GCA
    50799  CAG * 10    27/30     CAG CAG CAG CAG CAA CTG CAG CAG CAG CAA
    52098  ATT * 12    34/36     ATT ATT ATT ATT ATA ATT ATT ATT ATT ACT ATT ATT
    53947  AAC * 10    27/30     AAC AAC AAC AAC AAC AAC AAC AAG AAC GAT
    84569  CCG *  7    19/21     CCG CCG CCT CCG CGG CCG CCG
    84608  GCT *  7    19/21     GCT GCT GTT GTT GCT GCT GCT
    92352  CAA *  8    22/24     CAA CAG CAA CAA CAA CAA CAA AAA
   135595  CCT *  7    19/21     CCT CCT CCA CCT CCT CCG CCT
   170830  TGT *  7    19/21     TGT TGT TGT TGT TGT CGT CGT
   171839  GTG * 10    27/30     GTG GTA GTG GTA GTG GTG GTG GTG GTG GCG
   172179  CTG *  7    19/21     CTG CTG CTG ATG CTG ATG CTG
   202411  GGA *  7    19/21     GGA GGA GGA AGA GGA GGA TGA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       224882 
 Total number of repeats detected..............       22 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      2       1       1       0       0       0       0       0       0       0       0       0       0   
  ATT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GGA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCA      2       1