Tri-Nucleotide Repeats in Genomic Sequences Tri-Nucleotide Repeats in
Drosophila melanogaster Chromosome-Arm-3R Genomic Scaffolds


Genomic sequence
gi|7316099|gb|AE002681.1|AE002681 Drosophila melanogaster genomic scaffold 142000013386043, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       0 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7296880|gb|AE003607.1|AE003607 Drosophila melanogaster genomic scaffold 142000013386043 section 8 of 8, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    11105  GAA *  8    22/24     GAA GGA GAA GAA GAA GAA GAA GGA
    13626  CTG * 10    27/30     CTG CTG CTG CTG CAC CTG CTG CTG CTG GTG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       95401 
 Total number of repeats detected..............       2 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  GAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       0       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   1 GAA +   0 CTT +   0 TTC +    0 TCT      =    1 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    0 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    0 GCA +   0 CAG +   0 GCT +   1 CTG +    0 TGC      =    1 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7296839|gb|AE003606.1|AE003606 Drosophila melanogaster genomic scaffold 142000013386043 section 7 of 8, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     5354  TAA *  7    19/21     TAA TTC TAA TAA TAA TAA TAA
    26494  GTT * 11    30/33     GTT GTT GTA GTT GTT GTT GTT GTA GTT GGT GTT
    26554  GTT *  7    19/21     GTT GTT GTA GTT GGT GTT GTT
    26613  TGT * 11    30/33     TGT TGT TGT TGT TGT AGT TGT TGT AGT TGG TGT
    26668  GTT *  8    22/24     GTT GTT GTA GTT TTT GTT GTT GTT
    26700  TGT *  7    19/21     TGT TGT AGT TGC TGT TGT TGT
    26757  TGT *  8    22/24     TGT TGT TGT AGT TGG TGT TGT TGT
    30831  AGC * 10    28/30     AGC GAC AGC AGC AGC AGC AGC AGC AGC AGC
   128238  TGC *  8    22/24     TGC TGC TGC TGC TGC TGC TGT TGT
   129652  GCT *  7    19/21     GCT GCT ACT GCT ACT GCT GCT
   131081  TGC *  8    22/24     TGC TGC TGC TGT TGC TGT TGC TGC
   140114  TGC *  7    19/21     TGC TGT TGC TGC TAC TGC TGC
   194518  AGC *  7    19/21     AGC AGC AAC AAC AGC AGC AGC
   194574  CAG *  7    19/21     CAG CAG CAA CAG CAG CAG CAA
   269226  GTT *  8    22/24     GTT GAT GTT GTT GTT GAT GTT GTT
   280407  TAG *  7    19/21     TAG TAG TAG TAG AAG AAG TAG
   292532  TAT *  7    19/21     TAT TAT TAT TAT TAT TAT ATT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       300275 
 Total number of repeats detected..............       17 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AGC      2       1       1       0       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      3       2       1       0       0       0       0       0       0       0       0       0       0   
  TGC      3       3       0       0       0       0       0       0       0       0       0       0       0   
  GTT      4       3       1       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   1 TAA +   0 ATT +   0 TTA +    1 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   4 GTT +   0 TTG +    3 TGT      =    7 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   1 TAG +   0 ACT +   0 CTA +    0 TAC      =    1 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   2 AGC +    0 GCA +   1 CAG +   1 GCT +   0 CTG +    3 TGC      =    7 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7296808|gb|AE003605.1|AE003605 Drosophila melanogaster genomic scaffold 142000013386043 section 6 of 8, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     6689  GTT *  7    19/21     GTT GTC GTC GTT GTT GTT GTT
    42296  GAC *  7    19/21     GAC GAC GAG GAC GAC GAC GAA
    43703  ATG *  8    22/24     ATG TTG TTG ATG ATG ATG ATG ATG
    43853  CAA *  7    19/21     CAA CAG CAA CAA CAA AAA CAA
    44795  CAG * 10    27/30     CAG CAG CGG CAG CAG CAG CAG CAG CGG CGG
    45208  CAG * 10    27/30     CAG CAG CAG CAG CAC CAT CAG CAG CAG CAA
    45354  GCA *  9    25/27     GCA ACA GCA GCA GCA GCA ACA GCA GCA
    45397  CAG *  8    22/24     CAG CAT CAG CAG CAG CAG CAT CAG
    45424  CAG * 14    39/42     CAG CAG CAG CAG CAT CAG CAG CAG CAG CAT CAG CAA CAG CAG
    48756  AAT *  7    20/21     AAT AAC AAT AAT AAT AAT AAT
   116238  GAA *  7    19/21     GAA GAA GAA GAA GCA GAA GTA
   128312  TGT *  7    19/21     TGT GGC TGT TGT TGT TGT TGT
   166150  CAT *  7    20/21     CAT CAT CAT CAT CAC CAT CAT
   175273  CTC * 10    27/30     CTC CTC CTC CTC CTC CTC CTC CCC CTC CCT
   176205  TGC *  7    19/21     TGC TGC TGC TGC TGC GTC TGC
   185514  ATA * 27    73/81     ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ACA TGT GAT AAA
   220772  CTG *  7    19/21     CTG CTG CTG TTG CTG TTG CTG
   255416  TAA * 11    30/33     TAA TAA TCA TAA TAA TAA TAA TTA TAA TTA TAA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       274591 
 Total number of repeats detected..............       18 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATA      1       0       0       0       0       0       0       1       0       0       0       0       0   
  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      4       1       2       1       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTC      1       0       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    1 ATA +   1 TAA +   0 ATT +   0 TTA +    0 TAT      =    3 
   0 AAG +    0 AGA +   1 GAA +   0 CTT +   0 TTC +    0 TCT      =    1 
   0 AAC +    0 ACA +   1 CAA +   1 GTT +   0 TTG +    1 TGT      =    3 
   1 ATG +    0 TGA +   0 GAT +   1 CAT +   0 ATC +    0 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   1 CTC +    0 TCC      =    1 
   0 AGC +    1 GCA +   4 CAG +   0 GCT +   1 CTG +    1 TGC      =    7 
   0 ACG +    0 CGA +   1 GAC +   0 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7296793|gb|AE003604.1|AE003604 Drosophila melanogaster genomic scaffold 142000013386043 section 5 of 8, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    32647  GAC *  7    19/21     GAC GAC GAC AAC GAC GAT GAC
    59660  GCA * 11    31/33     GCA GCA GCA ACA GCA GCA GCA ACA GCA GCA GCA
    59780  GCA *  8    22/24     GCA ACA GCA GCA GCA GCA GCA ACA
    59912  ACA * 11    30/33     ACA ACA ACA ACA ACA GCA ACA ACA GCA GCA ACA
    59945  GCA *  7    19/21     GCA GCA GCA GCA GCA GCA GAC
    60312  CAG *  7    19/21     CAG CAG CAG CAA CAA CAG CAG
    60438  CAG * 13    36/39     CAG CAC CAG CAG CAG CAA CAG CAG CAG CAG CAG CAG CAA
    60785  GCA *  8    22/24     GCA GCA GCA GCA GCC ACA GCA GCA
    61122  GCC *  7    19/21     GCC GCC GCC GCT GCC GCC GGC
    61732  AAC *  7    19/21     AAC TGC AAC AAC AAC AAC AAC
    69567  TAT * 13    36/39     TAT TAT TAT TAT TAT TAT TAT TAT TAT TAC GAG TAT TAT
    84598  GTT *  7    19/21     GTT GTC GTT GTC GTT GTT GTT
   123177  TTG *  7    19/21     TTG CTG TTG TTG CTG TTG TTG
   127283  CAA *  7    19/21     CAA CAA CAA CAA CAA AAA CTA
   173990  ATT *  7    20/21     ATT TTT ATT ATT ATT ATT ATT
   201898  TGC *  7    19/21     TGC TGC TGT TGC TGC AGC TGC
   217834  TCC *  7    20/21     TCC TCC TCC TCC TCC TCC CCC
   275577  GGT *  7    20/21     GGT GGT GGT GGT GGT GAT GGT
   275765  TGG *  8    22/24     TGG TGG TGA TGG GGG TGG TGG TGG
   275911  CTG *  8    22/24     CTG CTG CTG GTG CTG CTG CTG TTG
   275936  TGC *  8    22/24     TGC TGC TGC TGG TGC TGG TGC TGC
   291426  CTG *  7    19/21     CTG TTG CTG TTG CTG CTG CTG
   291487  TGC *  7    20/21     TGC TGC TGC TGT TGC TGC TGC
   301657  CTG *  7    19/21     CTG CTC CTG CTC CTG CTG CTG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       302700 
 Total number of repeats detected..............       24 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TAT      1       0       0       1       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      3       3       0       0       0       0       0       0       0       0       0       0       0   
  TCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      4       3       1       0       0       0       0       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      2       1       0       1       0       0       0       0       0       0       0       0       0   
  CTG      3       3       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   1 ATT +   0 TTA +    1 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    1 ACA +   1 CAA +   1 GTT +   1 TTG +    0 TGT      =    5 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    1 TCC      =    1 
   0 AGC +    4 GCA +   2 CAG +   0 GCT +   3 CTG +    3 TGC      =   12 
   0 ACG +    0 CGA +   1 GAC +   0 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   1 GGT +   0 GTG +    1 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   1 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7296751|gb|AE003603.1|AE003603 Drosophila melanogaster genomic scaffold 142000013386043 section 4 of 8, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     3223  GCT *  7    19/21     GCT CCT GCG GCT GCT GCT GCT
    16925  AGT *  7    19/21     AGT ACT AGT AGT ACT AGT AGT
    23788  TGC *  9    26/27     TGC TGT TGC TGC TGC TGC TGC TGC TGC
    34544  CAA *  9    25/27     CAA CAA CAA CAA CAA CAA CAA CAA GAG
    85210  TTG *  7    19/21     TTG CTG TTG TTG TTG CTG TTG
   105941  CAC * 13    36/39     CAC TAC CAA CAC CAC CAC CAC CAC CAC CAC CAC CAC CAA
   125353  TCA *  8    23/24     TCA TCA CCA TCA TCA TCA TCA TCA
   128437  TAT * 12    33/36     TAT TAT TAT TAT TAT TAT AAT TAT TAT TTT TAT TTT
   145826  GCT *  7    19/21     GCT GCT GCT GCA GCT GCC GCT
   148281  TTC *  7    19/21     TTC TTG TTT TTC TTC TTC TTC
   153162  TGC * 10    29/30     TGC TGC TGC TGC TGC TGC TGC TGC TGC GGC
   182740  CTG *  7    19/21     CTG CTG CCG CTG CTG CTG CTT
   241017  AAT *  7    19/21     AAT AAA AAT AAC AAT AAT AAT
   242547  TAG *  7    19/21     TAG AAA TAG TAG TAG TAG TAG
   262684  TGA *  7    19/21     TGA TGA CGT TGA TGA TGA TGA
   264431  CAG *  8    22/24     CAG CAG CAG CAG CAG CAG CAA CAT
   264523  GCA *  7    19/21     GCA GCA GCA GCT GCA GCA ACA
   264790  GCA *  9    25/27     GCA ACA GCA GCA GCA GCA GCA ACA GCA
   264974  CAG *  8    22/24     CAG CAA CAG CAA CAG CAG CAG CAG
   290380  AAT *  8    23/24     AAT AAT AAT AAT AAT AAT AAT AAA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       294507 
 Total number of repeats detected..............       20 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  AGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       1       1       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAC      1       0       0       1       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   2 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    1 TAT      =    3 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   1 TTC +    0 TCT      =    1 
   0 AAC +    0 ACA +   1 CAA +   0 GTT +   1 TTG +    0 TGT      =    2 
   0 ATG +    1 TGA +   0 GAT +   0 CAT +   0 ATC +    1 TCA      =    2 
   1 AGT +    0 GTA +   1 TAG +   0 ACT +   0 CTA +    0 TAC      =    2 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    2 GCA +   2 CAG +   2 GCT +   1 CTG +    2 TGC      =    9 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   1 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7296683|gb|AE003602.1|AE003602 Drosophila melanogaster genomic scaffold 142000013386043 section 3 of 8, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    14987  TGA *  8    22/24     TGA TGA TGA TGA TGA TTA CGA TGA
    21925  GCA *  8    22/24     GCA GCA GCA ACA GCA GCA GCA GCT
    22000  GCA * 10    28/30     GCA GCA GCA ACA GCA GCA GCA GCA GGA GCA
    22267  GCA *  7    20/21     GCA GCA GCA GCA GCA GCA ACA
    24272  CAG * 11    31/33     CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CCC
    24820  GCG *  7    19/21     GCG GCG GCG GCA GCG GCG GCA
    30695  CTC *  8    22/24     CTC CTG CTC CTC CTC GTC CTC CTC
    44135  GTT *  8    22/24     GTT GTT TTT GTT GTT GTT GTT GAT
    52048  AGG *  7    19/21     AGG AGG AGG AGC AGG AGG CGG
    68496  TGC *  7    19/21     TGC TAC TGC TGC TGC TGC TGT
    68520  TGT *  7    19/21     TGT TGT TGT TGT TGT TGT TAG
    80992  AAG *  7    19/21     AAG AAG AAG AAG AAG AAG GAC
    81249  GAA *  7    19/21     GAA GAA AAA GAA GCA GAA GAA
    99014  CAC *  7    19/21     CAC CAC CAC CAC AAC CCC CAC
   111159  TAA *  8    22/24     TAA TAA TAA TAA TAA TAA TAA AAT
   128073  GCA * 10    27/30     GCA GCA GCA GCA ACA ACA GCA GCA GCA GCC
   227172  TAC *  7    20/21     TAC TAC TAC TAC TAC TAT TAC
   243612  CCT *  7    19/21     CCT CCT GCT CCT GCT CCT CCT
   292969  TCC *  7    19/21     TCC TCC TCC TCA TCC TCA TCC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       297266 
 Total number of repeats detected..............       19 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      4       2       2       0       0       0       0       0       0       0       0       0       0   
  GCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   1 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   1 AAG +    0 AGA +   1 GAA +   0 CTT +   0 TTC +    0 TCT      =    2 
   0 AAC +    0 ACA +   0 CAA +   1 GTT +   0 TTG +    1 TGT      =    2 
   0 ATG +    1 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    1 TAC      =    1 
   1 AGG +    0 GGA +   0 GAG +   1 CCT +   1 CTC +    1 TCC      =    4 
   0 AGC +    4 GCA +   1 CAG +   0 GCT +   0 CTG +    1 TGC      =    6 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   1 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    1 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7296642|gb|AE003601.1|AE003601 Drosophila melanogaster genomic scaffold 142000013386043 section 2 of 8, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     7384  GGT * 11    30/33     GGT GGA GGT GGT GGT GGA GGT GGT GGT GGA GGT
    40607  CGG *  8    22/24     CGG AGG AGG CGG CGG CGG CGG CGG
    52257  TTA *  7    19/21     TTA TGA TTA TTA TTA TTA TTG
    63928  TGC *  8    22/24     TGC TGC TGC TGC TGC GGC TGG TGC
   124463  CAG *  8    23/24     CAG CAG CAG CAG CAG CAA CAG CAG
   164072  GCA *  8    22/24     GCA GCA GCA GCA GCA GTT GCA GCA
   164217  CAG *  7    19/21     CAG CAG CAC CAA CAG CAG CAG
   164326  GCA *  7    19/21     GCA GTA GCA GCA GCA GCA GGA
   164350  GCA *  7    19/21     GCA GAA GCA GCA GCA GCA ACA
   168633  TGT * 10    27/30     TGT TGT TGT TGT TTT TGT TGT TTT TGT TGC
   175603  GGA *  7    19/21     GGA GGA GGA GGC GGA GGA GGT
   234259  TAT *  8    23/24     TAT TAT TAC TAT TAT TAT TAT TAT
   239415  CTG *  8    22/24     CTG CTG CTG CTG CTG ATG GTG CTG
   287124  TAT *  7    19/21     TAT TAT TAT TGT TGT TAT TAT
   301106  AGC *  7    19/21     AGC AGC AGG ATC AGC AGC AGC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       303626 
 Total number of repeats detected..............       15 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GCA      3       3       0       0       0       0       0       0       0       0       0       0       0   
  CAG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   1 TTA +    2 TAT      =    3 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    1 TGT      =    1 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    1 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   1 AGC +    3 GCA +   2 CAG +   0 GCT +   1 CTG +    1 TGC      =    8 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   1 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   1 CGG +   0 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7296607|gb|AE003600.1|AE003600 Drosophila melanogaster genomic scaffold 142000013386043 section 1 of 8, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     5043  ATT *  8    22/24     ATT ATT ATT ATT ATT ATT AAA ATT
    13155  TGC *  7    19/21     TGC TGC TGC TGC GTC TGC TGC
    20187  TTA *  8    23/24     TTA TTA TTA TTA TTA TTA TTT TTA
    25616  TGT *  7    19/21     TGT TGT GGT TGT TGT AGT TGT
    25922  TGT *  7    19/21     TGT TGT GGT TGT TGT AGT TGT
    44848  CTG *  7    19/21     CTG CGG CTG CTG CTG CTG CTC
    48997  GGT *  7    19/21     GGT GGT GGT GGT GGC GGT GGC
    67216  CTT *  7    19/21     CTT CTT CTT TTT CTT TTT CTT
    72646  CTT *  7    20/21     CTT CTT CTT CTC CTT CTT CTT
    91415  AAT * 86   232/258    AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT ATT AAT AAT ATT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT GAT AAT AAT AAT AAT AGT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAG AAT AAT AAT AAT AAT AAT AAA ATA AGT TTA AAG AGT AGT GCA TTT AAT TTT CAC CAG
   103688  ATC *  7    19/21     ATC GTC ATT ATC ATC ATC ATC
   108769  TAT *  7    19/21     TAT TAT TAT TAT TAT CGT TAT
   139273  ATT *  8    22/24     ATT ATT ATT ATT ATT ATT ATT AAG
   193636  AGC * 14    38/42     AGC AAC AGC AGC AGC AGC AGC AGC AGC AAA AGC AGC AGC GGC
   199946  CTG *  8    22/24     CTG CTA CTC CTG CTG CTG CTG CTG
   214180  TAT * 10    28/30     TAT ATT TAT TAT TAT TAT TAT TAT TAT TAT
   226893  CCA *  8    22/24     CCA GCA CCA CCA CCA CCA TCA CCA
   276829  AAG *  8    22/24     AAG AAA AAG AAG AAA AAG AAG AAG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       291545 
 Total number of repeats detected..............       18 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       0       0       0       0       0       0       0       0       0       0       0       1   
  AAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  ATC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       0       0       1       0       0       0       0       0       0       0       0       0   
  TAT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   2 ATT +   1 TTA +    2 TAT      =    6 
   1 AAG +    0 AGA +   0 GAA +   2 CTT +   0 TTC +    0 TCT      =    3 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    2 TGT      =    2 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   1 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   1 AGC +    0 GCA +   0 CAG +   0 GCT +   2 CTG +    1 TGC      =    4 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    1 CCA +   0 CAC +   1 GGT +   0 GTG +    0 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7316097|gb|AE002699.1|AE002699 Drosophila melanogaster genomic scaffold 142000013386040, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       0 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7298913|gb|AE003675.1|AE003675 Drosophila melanogaster genomic scaffold 142000013386040 section 5 of 5, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    33433  TGC *  7    19/21     TGC TGC TGC TGT TGG TGC TGC
    37990  TGG * 12    33/36     TGG GGA TGG TGG TGG TGG TGG TGG TGG TGG TGT TGG
    38026  TGC *  7    19/21     TGC TGC TGC TGC TGC TGT TGT
    40058  CCG *  8    22/24     CCG CCG CCG CCG CTG CCG CCT CCG
    53720  TAA *  7    19/21     TAA CAA TAA TAA TAA TAA TGA
    88729  GGT * 13    36/39     GGT GGC GGT GGT GGT GGT GGC GGT GGT GGT GGT GGT GGA
   120713  TTG *  7    19/21     TTG TGG TTG GTG TTG TTG TTG
   120737  TTG *  8    22/24     TTG TTG TTG TTG TTC TTG TTG TTT
   141793  ATG *  7    19/21     ATG GCG ATG ATG ATG ATG ATG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       145786 
 Total number of repeats detected..............       9 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GGT      1       0       0       1       0       0       0       0       0       0       0       0       0   
  CCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   1 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   2 TTG +    0 TGT      =    2 
   1 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    0 GCA +   0 CAG +   0 GCT +   0 CTG +    2 TGC      =    2 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   1 GGT +   0 GTG +    1 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   1 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7298877|gb|AE003674.1|AE003674 Drosophila melanogaster genomic scaffold 142000013386040 section 4 of 5, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     8389  ATT *  8    22/24     ATT ATT TTT AAT ATT ATT ATT ATT
    50175  CAT *  8    22/24     CAT CAT CAT CAT CAT CAT CAT CGA
    68174  CAG *  8    22/24     CAG CAG CAG CTG CCG CAG CAG CAG
    68429  CAG *  7    19/21     CAG CAC CAC CAG CAG CAG CAG
    85460  GCT *  8    22/24     GCT GCT GCT GCT GCT GCT GTT GGT
   100035  GCA *  8    22/24     GCA GCT GCA GCA GCA GCA ACA GCA
   100185  GCA *  8    22/24     GCA GCA GCA CCA GCA ACA GCA GCA
   100828  CAG *  7    19/21     CAG CAG CAA CAG CAG CAG CCG
   114141  ATC *  7    19/21     ATC GTC GTC ATC ATC ATC ATC
   116022  AGC *  7    19/21     AGC CGC CGC AGC AGC AGC AGC
   141631  CTG *  8    22/24     CTG CTG CTG CTG CCA CTG CTG CTG
   168657  GCA *  7    19/21     GCA GCC GCA GCA GCA GCA ACA
   168681  GCA *  7    19/21     GCA GCT GCA GCT GCA GCA GCA
   199052  TCG *  7    19/21     TCG TCG CCG TCG ACG TCG TCG
   218890  GAA *  7    19/21     GAA GAA GAA GAG GGA GAA GAA
   254164  GCA *  7    21/21     GCA GCA GCA GCA GCA GCA GCA
   271419  GGA *  9    25/27     GGA GGA GGA GGA GTA GGA GGA GGA GGC
   276355  AGC *  7    19/21     AGC AGC AGC AGT AGC AGC AAC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       298028 
 Total number of repeats detected..............       18 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      5       5       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      3       3       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   1 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   1 GAA +   0 CTT +   0 TTC +    0 TCT      =    1 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    0 
   0 ATG +    0 TGA +   0 GAT +   1 CAT +   1 ATC +    0 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    1 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   2 AGC +    5 GCA +   3 CAG +   1 GCT +   1 CTG +    0 TGC      =   12 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    1 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7298860|gb|AE003673.1|AE003673 Drosophila melanogaster genomic scaffold 142000013386040 section 3 of 5, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    35332  TGC *  7    20/21     TGC TGC TGC TGC TGC TGC TGT
    79140  TGG *  8    23/24     TGG TGG TGG TGG TGA TGG TGG TGG
    81025  TAT * 12    33/36     TAT TAT TAT TAT TAT TAT TAT TTT TAT TAT TAT ATT
   107929  GCT *  7    19/21     GCT GCT GCT GAT GCT GCT GCA
   129652  TAT *  7    19/21     TAT TAT TAT TAT TAT TAT TTG
   157499  TTG *  7    19/21     TTG TTG CTG TTC TTG TTG TTG
   159991  GCT *  7    19/21     GCT GCT GCA GTT GCT GCT GCT
   177546  CAG *  9    25/27     CAG CAG CAA CAG CAG CAG CAG CAA CAG
   245314  GCA * 11    30/33     GCA GCA GCA GCA GCA ACA GCA ACA GCA GCA ACA
   245410  GCA *  8    22/24     GCA ACA GCA GCA ACA GCA GCA GCA
   245530  CAA *  7    19/21     CAA CAG CAA CAA CAA CAA CAG
   245675  GCC *  7    19/21     GCC GCC GCT GCC GCC GCC GGC
   261812  CGG *  7    19/21     CGG CGG CGG CGG CAT CGG CGG
   262038  GCA *  8    22/24     GCA GCA GCA TCA GCA GCA GCA GGA
   285729  GTT * 11    30/33     GTT GCT GTT GTT GTT GTT GTT GTT ATT ATT GTT
   286196  CTG *  7    19/21     CTG CTG CGT CTG CTG CTG CTG
   308255  GAG *  7    19/21     GAG GAG GAG GAG AAG GAA GAG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       309357 
 Total number of repeats detected..............       17 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  TAT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GCA      3       2       1       0       0       0       0       0       0       0       0       0       0   
  GCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    2 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   1 CAA +   1 GTT +   1 TTG +    0 TGT      =    3 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   1 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   0 AGC +    3 GCA +   1 CAG +   2 GCT +   1 CTG +    1 TGC      =    8 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    1 TGG      =    1 
   0 GGC +    0 GCG +   1 CGG +   1 GCC +   0 CCG +    0 CGC      =    2 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7298812|gb|AE003672.1|AE003672 Drosophila melanogaster genomic scaffold 142000013386040 section 2 of 5, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    48768  ATA *  7    21/21     ATA ATA ATA ATA ATA ATA ATA
    79262  CGC *  7    19/21     CGC CGC CGC CGC CGC TGC AGC
    86480  GCC * 10    28/30     GCC GCC GCT GCC GCC GCC GCC GCC GCT GCC
   104920  GCT *  8    22/24     GCT GCT GCT GCT GCG GCC GCT GCT
   110628  GCA * 18    49/54     GCA GCA GCA GCA GCA ACA GCA GCA GCA GCA GCA TCA CCA GCA GCA GCA ACA CCA
   112487  GCA *  8    22/24     GCA CCA GCA GCA GCA GCA GCA ACA
   112515  CAG * 18    49/54     CAG CAG CAG CAG CAG CAG CAG CAG CAG CAA CAG CAG CAG CAG CAG GCG CAC CAC
   112614  CAG *  7    19/21     CAG CAG CAG CAG CAG CAA CAA
   154286  TTG *  7    19/21     TTG TTG CTG TTG TTG TTT TTG
   191994  GCT *  7    19/21     GCT GCT GCT GTT GCT GCT GGT
   192032  TGC * 10    27/30     TGC TGC TGG TGC TGC TGG TGC TGC TGC TGT
   193420  TGC *  7    19/21     TGC AGC TGC TGT TGC TGC TGC
   207522  CTG *  8    22/24     CTG GTG CTG CTG CTG CTC CTG CTG
   207549  CTG *  8    22/24     CTG CTG CTG ATG CTG CTG CTG TTG
   212743  CCT *  7    19/21     CCT CCT CCT CCT CAT CCT TCT
   214401  TCA *  7    19/21     TCA TCA TTA TCA TCA TCA CCA
   247988  CCT *  7    19/21     CCT CCT CCT TCT CCT GCT CCT
   264979  TTA *  7    19/21     TTA TTA TTA TTA TTA TAA TAA
   288129  CAG *  7    19/21     CAG CAA CAA CAG CAG CAG CAG
   290552  ACA *  8    22/24     ACA ACA ACA ACC TCA ACA ACA ACA
   291160  GCA *  7    20/21     GCA GCA GCA GCA GCA GCA TCA
   291205  GCA *  9    25/27     GCA GCA ACA GCA GCA GCA GCA GCA ACA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       301601 
 Total number of repeats detected..............       22 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       1       1       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      4       3       0       0       1       0       0       0       0       0       0       0       0   
  GCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CAG      3       2       0       0       1       0       0       0       0       0       0       0       0   
  CTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    1 ATA +   0 TAA +   0 ATT +   1 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    1 ACA +   0 CAA +   0 GTT +   1 TTG +    0 TGT      =    2 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    1 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   2 CCT +   0 CTC +    0 TCC      =    2 
   0 AGC +    4 GCA +   3 CAG +   2 GCT +   2 CTG +    2 TGC      =   13 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   1 GCC +   0 CCG +    1 CGC      =    2 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7298787|gb|AE003671.1|AE003671 Drosophila melanogaster genomic scaffold 142000013386040 section 1 of 5, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    84603  GCT *  7    20/21     GCT GCT GCT GCT GCT TCT GCT
   115779  CTG * 10    27/30     CTG CTG CTG CTG CTG CTG CTG CCG CCG CCG
   123434  CAG * 12    33/36     CAG CAG CAG CAG CAA CAG CAA CAG CAG CAG CAG CAA
   123614  CAG *  7    19/21     CAG CAA CAG CAT CAG CAG CAG
   123641  CAG * 11    30/33     CAG CAG CAG CAG CAG CAG CAA CAG CAG CAA CAT
   248139  CTG *  7    19/21     CTG CTG CTG CTC CTG CTG ATG
   255681  GTC *  8    22/24     GTC GTT GTC GTC GTC GTT GTC GTC
   265181  ACC *  7    20/21     ACC ACG ACC ACC ACC ACC ACC
   272164  CAG *  9    25/27     CAG CAA CAG CAG CAG CAG CAG CAA CAG
   280346  GCT * 10    27/30     GCT GCT GCT GTT GCT GCT GCT GCT GCT GGC
   292060  TTA *  8    24/24     TTA TTA TTA TTA TTA TTA TTA TTA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       309023 
 Total number of repeats detected..............       11 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ACC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CAG      4       2       2       0       0       0       0       0       0       0       0       0       0   
  CTG      2       1       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   1 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    0 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    0 GCA +   4 CAG +   2 GCT +   2 CTG +    0 TGC      =    8 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   1 GTC +    0 TCG      =    1 
   1 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7316093|gb|AE002708.1|AE002708 Drosophila melanogaster genomic scaffold 142000013386035, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       0 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7302106|gb|AE003780.1|AE003780 Drosophila melanogaster genomic scaffold 142000013386035 section 105 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    24513  AAT *  7    19/21     AAT AAT AAT TAT TAT AAT AAT
    37058  CAG *  7    19/21     CAG AAG TAG CAG CAG CAG CAG
   109281  ACA *  7    19/21     ACA AAA ACA ACG ACA ACA ACA
   172366  CAT *  7    19/21     CAT CAT CAT CAT CAT CAG CAG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       249284 
 Total number of repeats detected..............       4 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    1 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    1 
   0 ATG +    0 TGA +   0 GAT +   1 CAT +   0 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    0 GCA +   1 CAG +   0 GCT +   0 CTG +    0 TGC      =    1 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7302062|gb|AE003779.1|AE003779 Drosophila melanogaster genomic scaffold 142000013386035 section 104 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    22507  CAG *  7    19/21     CAG CAG CAG CCG CAG CAG CAA
    22894  GCA * 11    30/33     GCA ACA ACA GCA GCA GCA GCA GCA GCA GCA ACA
    22931  CAG *  8    22/24     CAG CAG CAG CAG CAA CAG CAG CAA
    40752  TGC *  7    19/21     TGC TTC TGC TGC TTC TGC TGC
    43960  GCT *  8    22/24     GCT ACT GCT GCT GCT GCT GTT GCT
    56985  TCA *  7    19/21     TCA TGA TCA TAA TCA TCA TCA
    62280  GCA * 14    40/42     GCA ACA GCA GCA GCA GTA GCA GCA GCA GCA GCA GCA GCA GCA
    70057  GCA *  7    19/21     GCA GCA GCA GCC GCA ACA GCA
    70489  GCA * 12    33/36     GCA GCA ACA GCA GCA GCA GCA CCA GCA GCA GCA TCA
    70532  CAG *  7    20/21     CAG CAG CAG CAG CAA CAG CAG
    70556  CAG *  8    22/24     CAG CAG CAG CAG CAC CAG CAG CTG
    70696  GCC *  7    19/21     GCC TCC TCC GCC GCC GCC GCC
   133459  ACA *  8    22/24     ACA ACA ACA ACA ACA GCA GCA ACA
   167468  TGG * 10    27/30     TGG TGG TGG TGG TGG TGG TGG TGG TGG ACA
   173547  CCA *  7    19/21     CCA CCA CCG CCT CCA CCA CCA
   173681  GCC *  8    22/24     GCC GCC GCC GCC ACC ACC GCC GCC
   198239  AGC *  8    22/24     AGC AGC AAC AAC AGC AGC AGC AGC
   208520  CAA *  7    19/21     CAA CGG CAA CAA CAA CAA CAA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       232064 
 Total number of repeats detected..............       18 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      4       1       2       1       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      4       4       0       0       0       0       0       0       0       0       0       0       0   
  CCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    1 ACA +   1 CAA +   0 GTT +   0 TTG +    0 TGT      =    2 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    1 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   1 AGC +    4 GCA +   4 CAG +   1 GCT +   0 CTG +    1 TGC      =   11 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    1 CCA +   0 CAC +   0 GGT +   0 GTG +    1 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   2 GCC +   0 CCG +    0 CGC      =    2 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7302043|gb|AE003778.1|AE003778 Drosophila melanogaster genomic scaffold 142000013386035 section 103 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     2783  GCA *  9    25/27     GCA GGT GCA GCA GCA GCA GCA GCA GCA
     5773  GCA * 22    60/66     GCA GCA ACA GCA GCA GCA GCA GCA ACA GCA GCA GCA ACA GCA GCA GCA GCA ACA GCA ACA CCA GCA
    10848  GTT *  7    19/21     GTT GTT GTT GTT GGT GTT TTT
    55592  ATC * 21    59/63     ATC ATC ATC ATC CGC ATC ATC ATC ATC ATC ATT ATC ATC ATC ATC ATC ATC ATC ATC AGC ATC
    66771  CAG *  7    19/21     CAG CAG CAA CAG CAG CAG GAG
    86850  TGC *  7    19/21     TGC CGC TGC CGC TGC TGC TGC
    88866  CAA *  8    22/24     CAA CAA CAT CAA CAA CAG CAA CAA
   126191  CCT *  8    22/24     CCT CCT CCT GCT CCC CCT CCT CCT
   155894  GAG *  8    22/24     GAG GAG GAG GGG GAG CAG GAG GAG
   164531  GCC *  7    19/21     GCC GCC GCC GCC GCC GCC GGT
   164729  ACA *  7    19/21     ACA CCA ACA ACA AGA ACA ACA
   183064  GCA * 10    28/30     GCA GCA GCA GCA GCA GCA GCA ACT GCA GCA
   192833  CAC *  7    19/21     CAC CAG CAG CAC CAC CAC CAC
   198580  ATG *  8    22/24     ATG ATG ATG ATG ATG ATG ACG ACG
   212578  GTT *  8    22/24     GTT GTT GTT ATT GCT GTT GTT GTT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       225108 
 Total number of repeats detected..............       15 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATC      1       0       0       0       0       1       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCA      3       1       1       0       0       0       1       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    1 ACA +   1 CAA +   2 GTT +   0 TTG +    0 TGT      =    4 
   1 ATG +    0 TGA +   0 GAT +   0 CAT +   1 ATC +    0 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   1 GAG +   1 CCT +   0 CTC +    0 TCC      =    2 
   0 AGC +    3 GCA +   1 CAG +   0 GCT +   0 CTG +    1 TGC      =    5 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   1 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   1 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7302015|gb|AE003777.1|AE003777 Drosophila melanogaster genomic scaffold 142000013386035 section 102 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    13555  GAT *  7    19/21     GAT GTT GAT GAT GAT GAT GAG
    38918  AGG *  7    20/21     AGG AGG AGG AGG AGG AGG AGC
    55174  AAG *  7    20/21     AAG AAG AAG AAG AAG AAG GAG
    84507  TTG *  7    19/21     TTG TTC TGG TTG TTG TTG TTG
    94651  GCA *  9    25/27     GCA GCC GCA ACA GCA GCA GCA GCA GCA
    95126  CAG * 17    47/51     CAG CAG CAG CAG CAG CAG CAA CAG CAG CAG CAA CAG CAA CTG CAG CAG CAG
   101547  GTG *  7    19/21     GTG GTG GTG GTG GTG ATG GTA
   104779  TAT *  8    23/24     TAT TAT TAT TAA TAT TAT TAT TAT
   111329  CAT * 10    27/30     CAT CAT CAT CAG CAT CAT GAT CAT CAT CTT
   129568  AGT * 10    28/30     AGT ATT AGA AGT AGT AGT AGT AGT AGT AGT
   143412  AAT *  7    20/21     AAT AAT AAT AAA AAT AAT AAT
   177432  ATG *  8    22/24     ATG ATG ATG ATG ATG ATG ATG AGC
   180247  CTG * 10    28/30     CTG CTG ATG CTG CTG CTG CTG CTG CTT CTG
   206224  GCT *  7    19/21     GCT TCT GCT GCT GCT GCA GCT
   207479  ATG *  9    25/27     ATG ATG ATG ATG ATG GTG ATG ACG ATG
   207993  CAT * 10    27/30     CAT CAT CAT CAT CAT CAT CAT CAT CGT GCT
   228603  GCA *  7    19/21     GCA GCA GCA GCG GCA GCA GAA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       232000 
 Total number of repeats detected..............       17 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  AGT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  AGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      2       0       2       0       0       0       0       0       0       0       0       0       0   
  CAG      1       0       0       0       1       0       0       0       0       0       0       0       0   
  CTG      1       0       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    1 TAT      =    2 
   1 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    1 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   1 TTG +    0 TGT      =    1 
   2 ATG +    0 TGA +   1 GAT +   2 CAT +   0 ATC +    0 TCA      =    5 
   1 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    1 
   1 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   0 AGC +    2 GCA +   1 CAG +   1 GCT +   1 CTG +    0 TGC      =    5 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   1 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7301994|gb|AE003776.1|AE003776 Drosophila melanogaster genomic scaffold 142000013386035 section 101 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     9458  CAC *  7    19/21     CAC CAC CAC CAC CAC CAG CAG
    23311  CAA *  8    22/24     CAA CAG CAG CAA CAA CAA CAA CAA
    38989  TTG *  7    19/21     TTG TTG CTG CTG TTG TTG TTG
   118645  CTG *  8    22/24     CTG CTT CTG CTT CTG CTG CTG CTG
   137083  AAT *  7    19/21     AAT AAT AAC AAT AAC AAT AAT
   139530  AGC *  8    22/24     AGC AGC AGC AGC AGC AGC AAC AAC
   176421  GCA *  8    22/24     GCA GCA GCA GGA GCA GCA GCA CCA
   194580  ATT *  8    22/24     ATT ATT ATT ATT ATT ATT ATG ATG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       225879 
 Total number of repeats detected..............       8 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   1 ATT +   0 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   1 CAA +   0 GTT +   1 TTG +    0 TGT      =    2 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   1 AGC +    1 GCA +   0 CAG +   0 GCT +   1 CTG +    0 TGC      =    3 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   1 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7301969|gb|AE003775.1|AE003775 Drosophila melanogaster genomic scaffold 142000013386035 section 100 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

      657  TGC *  7    19/21     TGC TGC CGC TGC TGC TGC TGT
    90278  GAT *  7    19/21     GAT GAG GCT GAT GAT GAT GAT
    92592  CAC * 10    28/30     CAC CAG CAG CAC CAC CAC CAC CAC CAC CAC
   103783  CAG * 11    30/33     CAG CAG CAG CAA CTG CAG CAG CAG CAG CAG CAT
   107391  CAT *  7    21/21     CAT CAT CAT CAT CAT CAT CAT
   113941  AGC *  7    19/21     AGC AGC AAA AGC AGC AGC AGC
   115748  CAG * 12    33/36     CAG CAG CAG CAC CAG CAG CAG CAG CAA CAG CAT CAG
   115945  GCC *  7    20/21     GCC GCC GCC GCC GCC ACC GCC
   122313  TGT *  7    19/21     TGT TGT TGT TGT TGT TGC TCT
   122477  TGC * 10    28/30     TGC TGT TGC TGC TGC TGC TGC TGC TGT TGC
   122524  CTG *  8    22/24     CTG TTG TTG CTG CTG CTG CTG CTG
   122675  TGC *  7    19/21     TGC TGG TGC TGA TGC TGC TGC
   129691  ATT *  8    23/24     ATT ATT ATT ATT TTT ATT ATT ATT
   133877  TAG * 11    31/33     TAG TAG CAG TAG TAG TAG TAG TAA TAG TAG TAG
   137982  GTT *  7    19/21     GTT GTT GTG GTT GTT GTA GTT
   147273  GCA *  7    19/21     GCA ACT GCA GCA GCA GCA GCA
   170124  GGT * 10    27/30     GGT GCA GGT GGT GGT GGT GGT GGT GGT GGC
   204583  TGC *  7    20/21     TGC TGC TGC TGC TGC TGC TGG
   207075  CTG *  7    19/21     CTG CTG CTG CTG TTG CTG TTG
   207098  GCT *  7    19/21     GCT GCT GCT GCT GCT GCT GGG
   207587  CTG *  8    22/24     CTG TTG CTG CTG CTG CTG TTG CTG
   207618  TGC *  7    19/21     TGC TGT TGC TGT TGC TGC TGC
   207696  TGC * 11    30/33     TGC TGC TGC TGC TGT TGG TGC TGC TGC TGT TGC
   207735  TGC *  8    22/24     TGC TGC GGC TGC TGC TGC TGC TGG
   209033  TGC * 22    62/66     TGC TGC TGC TGC TGT TGT TGC TGC TGC TGC TGC TGT TGC TGC TGC TGC TGC TGC TGT TGC TGC TGC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       236109 
 Total number of repeats detected..............       25 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      8       5       2       0       0       0       1       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      2       0       2       0       0       0       0       0       0       0       0       0       0   
  CAC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CTG      3       3       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   1 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   1 GTT +   0 TTG +    1 TGT      =    2 
   0 ATG +    0 TGA +   1 GAT +   1 CAT +   0 ATC +    0 TCA      =    2 
   0 AGT +    0 GTA +   1 TAG +   0 ACT +   0 CTA +    0 TAC      =    1 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   1 AGC +    1 GCA +   2 CAG +   1 GCT +   3 CTG +    8 TGC      =   16 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   1 CAC +   1 GGT +   0 GTG +    0 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   1 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7301938|gb|AE003774.1|AE003774 Drosophila melanogaster genomic scaffold 142000013386035 section 99 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    30356  ATT * 11    30/33     ATT GTT ATT ATT ATT ATT ATT GTT ATT GTT ATT
    45398  CAG *  8    22/24     CAG CAG CAG CAG CAG CAG CAA CAC
    97404  AGT *  7    20/21     AGT AGT AGT AGT AGA AGT AGT
   116968  GGA *  7    19/21     GGA GGT GGA GGA GCA GGA GGA
   116990  ACC *  8    22/24     ACC ACC ACC ACC ACC ACG ACG ACC
   193067  ATA *  7    19/21     ATA ATA ATA ATA TTA ATA ATG
   220738  TGC *  8    22/24     TGC TGC TGC TGC TGC TCC TGC TCC
   231756  TAT *  7    19/21     TAT TAT TAT TAT TAT TAT ATT
   234334  GGA *  7    19/21     GGA GAA GGA GGC GGA GGA GGA
   234607  TTG *  7    20/21     TTG TTG TTG TTG TTG TTG TTT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       239003 
 Total number of repeats detected..............       10 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  AGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    1 ATA +   0 TAA +   1 ATT +   0 TTA +    1 TAT      =    3 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   1 TTG +    0 TGT      =    1 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   1 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    1 
   0 AGG +    2 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    2 
   0 AGC +    0 GCA +   1 CAG +   0 GCT +   0 CTG +    1 TGC      =    2 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   1 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7301915|gb|AE003773.1|AE003773 Drosophila melanogaster genomic scaffold 142000013386035 section 98 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    74206  CAG *  7    19/21     CAG CAG CAG CAC CAG CAA CAG
    74788  AAC *  8    22/24     AAC CGC AAC AAC AAC AAC AAC AAC
    75184  CAG *  8    23/24     CAG CAG CAG CAG CAA CAG CAG CAG
    75298  CAG * 10    27/30     CAG CAG CAG CAG CAG CAG CAG CTG CAA CAA
    91597  TGC *  7    20/21     TGC TGC TGC TGC TGC TGC TTC
    99706  ATT *  7    19/21     ATT ATT ATT ATT ATT TTT GTT
   111057  TCA * 22    60/66     TCA TTA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCG TGT CGA
   133245  CAG *  7    19/21     CAG CAG CAG CAG CAG CGG CAA
   133570  AAT *  7    19/21     AAT AAT AAG AAT AAG AAT AAT
   134799  CAG *  7    19/21     CAG CAG CAG CAG CAG CAA CAA
   154189  GCT * 12    33/36     GCT GCC GCT GCT GCT GCC GCT GCT GCT GCT GCT GCA
   155923  GCA * 11    30/33     GCA GCA GCA ACA GCA GCA GCA GCA GCA GCA ACC
   156014  CAG *  9    25/27     CAG CAG CAG CAG CAG CAG CAA CAT CAG
   156134  CAG * 11    30/33     CAG CAG CAG CAG CAC CAA CAG CAG CAG CAA CAG
   156266  AGC *  8    23/24     AGC AGC AGC AGC AGC AGC AGC AGT
   192544  AGC *  7    19/21     AGC AGC AAC AAC AGC AGC AGC
   192600  CAG *  7    19/21     CAG CAG CAA CAG CAG CAG CAA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       226905 
 Total number of repeats detected..............       17 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCA      1       0       0       0       0       0       1       0       0       0       0       0       0   
  GCA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GCT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CAG      8       6       2       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   1 ATT +   0 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    1 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    1 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   2 AGC +    1 GCA +   8 CAG +   1 GCT +   0 CTG +    1 TGC      =   13 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7301871|gb|AE003772.1|AE003772 Drosophila melanogaster genomic scaffold 142000013386035 section 97 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    13722  TCA *  7    19/21     TCA TCA TCA TCA TCT GCA TCA
    13949  CAG * 10    27/30     CAG CAG CAG CAG CAA CAG CAG CAG CAG GTG
    33456  GGA *  7    19/21     GGA GGA GGA TGA CGA GGA GGA
    67521  GGA *  8    22/24     GGA CGA GGA GGA GGA GGA GGA CGA
    82133  ACA *  7    19/21     ACA ATA ACA ACG ACA ACA ACA
    82594  CCT *  7    20/21     CCT CCG CCT CCT CCT CCT CCT
    84585  TGT * 10    27/30     TGT TGT TAT TGT TGT TGT TGT TGT TGT TTC
   103980  GCT *  8    22/24     GCT GCT GCT GCT GCT GCT GCT TTT
   117468  TCA * 13    36/39     TCA TCA TCA TCA TCA TCA TCA TCA TCA TTA CCA TCA TCT
   133228  CAG * 11    30/33     CAG CAG CAG CAG CAG CAA CAA CAG CAG CAG CAT
   133715  CAG *  8    22/24     CAG CAG CAG CAG CAG CAG CCG CAA
   133963  GCA *  7    19/21     GCA GCA ACA TCA GCA GCA GCA
   134054  CAG *  7    19/21     CAG CAG CAG CGT CAG CAG CAG
   134081  CAG * 10    28/30     CAG CAG CAA CAG CAG CAG CAG CAA CAG CAG
   135402  CAG * 12    34/36     CAG CAG CAA CTG CAG CAG CAG CAG CAG CAG CAG CAG
   135494  GCA * 12    33/36     GCA ACA GCA GCA GCA GCA GCA GCA ACA GCA ACA GCA
   225211  ATT *  7    19/21     ATT AAT ATT ATT ATT ATT ATA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       228448 
 Total number of repeats detected..............       17 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TCA      2       1       0       1       0       0       0       0       0       0       0       0       0   
  GGA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCA      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      6       2       4       0       0       0       0       0       0       0       0       0       0   
  CCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   1 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    1 ACA +   0 CAA +   0 GTT +   0 TTG +    1 TGT      =    2 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    2 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    2 GGA +   0 GAG +   1 CCT +   0 CTC +    0 TCC      =    3 
   0 AGC +    2 GCA +   6 CAG +   1 GCT +   0 CTG +    0 TGC      =    9 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7301817|gb|AE003771.1|AE003771 Drosophila melanogaster genomic scaffold 142000013386035 section 96 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    15779  GTT *  8    22/24     GTT GTT GCT GTT GTT GTT GCT GTT
    18395  GAG *  7    19/21     GAG GAG GAG GAG CAG GCG GAG
    18521  CAG *  7    19/21     CAG CAG CAG CTG CAG CAG CAC
    28187  AGC *  7    20/21     AGC AGC AGC AGC AGC AGC AAC
    33097  GCA *  8    22/24     GCA GCA GCA GCA GCA ACT GCA GCA
    33130  GCA *  7    19/21     GCA GCA ACA TCA GCA GCA GCA
    33152  CAG *  7    20/21     CAG CAG CAG CTG CAG CAG CAG
    33355  GCA *  9    25/27     GCA ACA GCC GCA GCA GCA GCA GCA GCA
    33418  GCA *  7    20/21     GCA ACA GCA GCA GCA GCA GCA
    33491  CAG *  7    20/21     CAG CAG CAG CAG CAG CAG CAA
    33595  GCA *  7    19/21     GCA GCA GCA GCA ACA GCA TCA
    56290  CAG * 12    33/36     CAG CAG CAG CAG CAG CAG CAG CAG CAT CAT CTG CAG
    56343  GCA *  8    23/24     GCA GCA GCA GCA GCA GCA ACA GCA
    56587  CAG *  8    22/24     CAG CAA CAG CAG CAG CAG CAG CAA
    56650  CAG *  7    19/21     CAG CAG CAG CAG CAG CAA CAT
   108951  TAT *  8    22/24     TAT TAT TAG TAT TAT TAT TAT TAA
   146558  CAG *  9    25/27     CAG CGG CAT CAG CAG CAG CAG CAG CAG
   168830  CAA *  7    19/21     CAA CAA CAA CAG GAA CAA CAA
   216747  TAA *  7    19/21     TAA TAA TAA TAA TAA TCA TTA
   220635  GCT * 10    27/30     GCT GCT GCT GGT GCT GCT GCT GCT GAT GTT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       235127 
 Total number of repeats detected..............       20 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      6       6       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      7       6       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   1 TAA +   0 ATT +   0 TTA +    1 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   1 CAA +   1 GTT +   0 TTG +    0 TGT      =    2 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   1 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   1 AGC +    6 GCA +   7 CAG +   1 GCT +   0 CTG +    0 TGC      =   15 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7301790|gb|AE003770.1|AE003770 Drosophila melanogaster genomic scaffold 142000013386035 section 95 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    39109  GCC *  8    22/24     GCC GCC GCC ACC GCC ACC GCC GCC
    42244  ATG *  7    20/21     ATG ATG ATG ATG ATG CTG ATG
    47242  CAG *  7    19/21     CAG CAA CAC CAG CAG CAG CAG
    48947  TGA *  8    23/24     TGA TGA TGA TGA TGA TGA TGA TGG
    52072  GCT *  8    22/24     GCT GTT GTT GCT GCT GCT GCT GCT
    52239  GCA *  7    19/21     GCA GCA GCA ACA GCA ACA GCA
    54035  GGA * 10    27/30     GGA AGA AGA GGA GGA GGA GGA GGA GGA GGG
    60539  TTG * 10    28/30     TTG TTG TAG TTG TTG TTG TTG CTG TTG TTG
    65385  AAC * 10    28/30     AAC AAC AAC AAC AAC AAC AAC AAC AGC AAG
    71659  GCG *  7    19/21     GCG GCG GCG ACG GCG GCG GGG
    79410  GTT * 14    38/42     GTT GTT ATT GTT GTT GTT GTT GTT GTT GCT GTG GTT GTT GTA
   123783  ACA *  8    22/24     ACA ACA ACA ACA ACA GCA AGA ACA
   131355  CCT *  8    22/24     CCT CCT CCT CCG CCA CCT CCT CCT
   182261  CAC * 11    31/33     CAC CAC CAC CAC CAC CAC CAC CAC CAC TAC CAT
   183773  CAG *  8    22/24     CAG CAG TCG CAG CAG CAG CAG CAG
   186040  CAG * 12    33/36     CAG CAG CAG CAA CAG CAG CAG CAG CAG CAG CAG AAC
   186094  CAG * 11    31/33     CAG CAA CAG CAG CAG CAG CAG CAA CAG CAG CAG
   208702  CAC * 10    27/30     CAC CAC CAA CAC CAC CAC CAC CAC CGC CGC
   218518  AAC *  8    22/24     AAC AAC AAT AAC AGC AAC AAC AAC
   218542  AAT *  9    25/27     AAT AAT AAT AAT AAT AGT AAT AAC AAT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       224100 
 Total number of repeats detected..............       20 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AAC      2       1       1       0       0       0       0       0       0       0       0       0       0   
  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       0       0       1       0       0       0       0       0       0       0       0       0   
  GGA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      4       2       2       0       0       0       0       0       0       0       0       0       0   
  CAC      2       0       2       0       0       0       0       0       0       0       0       0       0   
  CCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   2 AAC +    1 ACA +   0 CAA +   1 GTT +   1 TTG +    0 TGT      =    5 
   1 ATG +    1 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    1 GGA +   0 GAG +   1 CCT +   0 CTC +    0 TCC      =    2 
   0 AGC +    1 GCA +   4 CAG +   1 GCT +   0 CTG +    0 TGC      =    6 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   2 CAC +   0 GGT +   0 GTG +    0 TGG      =    2 
   0 GGC +    1 GCG +   0 CGG +   1 GCC +   0 CCG +    0 CGC      =    2 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7301774|gb|AE003769.1|AE003769 Drosophila melanogaster genomic scaffold 142000013386035 section 94 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    13512  ATA *  7    19/21     ATA ATA GTA ATA ATA ATA AAA
    54020  AGG * 10    28/30     AGG AGG AGG AGG AGG AGG AGG AGG AGG GGC
    63275  TTG * 10    27/30     TTG TTG TTG TCG TTG TTG TTG TTG TTG TGC
    63757  TTG *  8    24/24     TTG TTG TTG TTG TTG TTG TTG TTG
    64881  TGC *  8    23/24     TGC TGC TGC TGC TGC TGC TGC TGG
    71788  TTG * 10    27/30     TTG TTG TTG TTG TTG TTG TTG TTG TTA TGA
    75528  TGT * 10    28/30     TGT TGT TGT TGT TGT TGT TGT TCT TGT TAT
    77781  GTT *  7    19/21     GTT GTT GTT GTG GTT GCT GTT
    94832  CTT *  7    19/21     CTT CTT CTT CTG CGT CTT CTT
    94857  TTG * 11    30/33     TTG TTG TTG CTG TTG TTG TTG ATG TTG TTG TAG
   109393  GCA *  8    22/24     GCA GCA GCA GAA TCA GCA GCA GCA
   114218  TCA *  7    19/21     TCA TCA TCA TCA TCA TTA TCG
   116484  GAG *  7    19/21     GAG GAG GAG GAG TAG GTG GAG
   130756  TGC *  7    19/21     TGC TGC CGT TGC TGC TGC TGC
   155168  TGC *  9    25/27     TGC TGC TGC TGC TGC TGC TGC TGC AGA
   175147  TCA *  8    23/24     TCA TCA TCA TCA TCA ACA TCA TCA
   208190  CAG * 17    48/51     CAG CAG CAG CAG CAG CAG CAA CAG CAG CAG CAG CAG CAG CAG CAA CAA CAG
   214995  TTC *  7    19/21     TTC TAC TGC TTC TTC TTC TTC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       234161 
 Total number of repeats detected..............       18 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TTG      4       1       3       0       0       0       0       0       0       0       0       0       0   
  TTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGC      3       3       0       0       0       0       0       0       0       0       0       0       0   
  TCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       0       0       0       1       0       0       0       0       0       0       0       0   
  CTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    1 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   1 CTT +   1 TTC +    0 TCT      =    2 
   0 AAC +    0 ACA +   0 CAA +   1 GTT +   4 TTG +    1 TGT      =    6 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    2 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   1 AGG +    0 GGA +   1 GAG +   0 CCT +   0 CTC +    0 TCC      =    2 
   0 AGC +    1 GCA +   1 CAG +   0 GCT +   0 CTG +    3 TGC      =    5 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7301730|gb|AE003768.1|AE003768 Drosophila melanogaster genomic scaffold 142000013386035 section 93 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     4607  CTT *  7    19/21     CTT CTT CTT GGT CTT CTT CTT
    25804  CGA *  7    19/21     CGA CGA CGA CGA TGA CTA CGA
    50160  GTT * 12    33/36     GTT GTT GTT GTT GTT GTT GTT GTT GTT GTT GCT CTC
    63061  AGG *  7    19/21     AGG AGG AGA ACG AGG AGG AGG
    65283  CAG *  7    19/21     CAG CAG CAG CAG CAA CAA CAG
    65495  GCA * 10    27/30     GCA GCA GCA GCA GCA GCA GCA TCA GCA GTT
    65667  CAG *  8    23/24     CAG CAG CCG CAG CAG CAG CAG CAG
    65769  CAG *  7    20/21     CAG CAG CAG CAA CAG CAG CAG
    65994  CAA *  7    19/21     CAA CAG CAG CAA CAA CAA CAA
    66818  GCA *  9    25/27     GCA GCA GCA GCA GCA ACA ACA GCA GCA
    67188  GAC *  7    19/21     GAC GAT GAC GAC GAC GAG GAC
    70102  GCA *  7    19/21     GCA GCC GCA GCA GCA GCA ACA
    70676  CAA *  8    22/24     CAA CAA CAA CAA CAG CAG CAA CAA
    70952  CAG *  8    22/24     CAG CAG CAA CAG CAG CAG CAG CCG
    73425  CAG *  8    22/24     CAG CAG CAG CAA CAG CAC CAG CAG
   142408  GTG * 10    28/30     GTG GTG GTG GTG GTG GTG GTG TTG GCG GTG
   148802  TGC * 15    41/45     TGC TGC TGG TGC TGC TGG TGC TGC TGC TGC TGC TGC TGC TGT TGG
   161902  TGC *  7    19/21     TGC TGC TGC TGC TGC TGC CTC
   172240  GTT *  8    22/24     GTT GTT GTT GTT GTT GTT GTT TTC
   172283  TGT *  7    19/21     TGT TGT TGT TGT TGT TGT TCC
   178514  CCT *  7    19/21     CCT CCT CCT CCT GTT CCT CCT
   180751  AAG *  8    22/24     AAG AAG AAG AAT AAG CAG AAG AAG
   185798  AGC *  7    20/21     AGC AGC CGC AGC AGC AGC AGC
   185828  CAG *  7    19/21     CAG GAA CAG CAG CAG CAG CAG
   221075  TGG *  8    22/24     TGG TGG TGG TGG TGG CGT TGG TGG
   231963  GTG *  8    22/24     GTG GTG GTG GTG GTG GTG GTG GCA
   232025  GGT *  7    19/21     GGT GGT GAT GGT GGT GGT CGT
   236605  CAG *  7    19/21     CAG GAG CAG GAG CAG CAG CAG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       242815 
 Total number of repeats detected..............       28 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       1       0       1       0       0       0       0       0       0       0       0       0   
  GAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GTG      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      3       2       1       0       0       0       0       0       0       0       0       0       0   
  CAA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAG      7       7       0       0       0       0       0       0       0       0       0       0       0   
  CTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   1 AAG +    0 AGA +   0 GAA +   1 CTT +   0 TTC +    0 TCT      =    2 
   0 AAC +    0 ACA +   2 CAA +   2 GTT +   0 TTG +    1 TGT      =    5 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   1 AGG +    0 GGA +   0 GAG +   1 CCT +   0 CTC +    0 TCC      =    2 
   1 AGC +    3 GCA +   7 CAG +   0 GCT +   0 CTG +    2 TGC      =   13 
   0 ACG +    1 CGA +   1 GAC +   0 CGT +   0 GTC +    0 TCG      =    2 
   0 ACC +    0 CCA +   0 CAC +   1 GGT +   2 GTG +    1 TGG      =    4 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7301701|gb|AE003767.1|AE003767 Drosophila melanogaster genomic scaffold 142000013386035 section 92 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     1815  TGC *  8    22/24     TGC TGC CGC CGC TGC TGC TGC TGC
    18312  TGG *  8    22/24     TGG TGG TGG CGG TGG TGG AGG TGG
    28452  ATG *  8    23/24     ATG ATG ATG GTG ATG ATG ATG ATG
    43918  GCA *  8    23/24     GCA GCA GCA ACA GCA GCA GCA GCA
    44217  CAC *  7    19/21     CAC CAT CAC CAC CAC CAC CAG
    52915  GCT *  8    22/24     GCT GCT GCT GCT GGT GGT GCT GCT
    61908  CAT *  7    19/21     CAT CAT CAT CAT CAC CAG CAT
    78811  CTG *  7    19/21     CTG CTG CTG CTG CTG CTG GAG
    79276  GCG *  7    19/21     GCG GCG GCG GCG GCA GCG GTG
   102429  AGC *  9    25/27     AGC AGC AGC AGC AGC AGC AGC AGC AAG
   102518  GCA *  7    19/21     GCA GCA ACA GCA GCA GCA ACA
   103065  CAG *  7    19/21     CAG CAA CAT CAG CAG CAG CAG
   103421  GCA *  8    22/24     GCA ACA GCA ACA GCA GCA GCA GCA
   105377  CAG *  7    19/21     CAG CAG CAG CAG CAG CAG CGT
   105526  GCA *  7    19/21     GCA GCA GCA GCA GCA GCA ACG
   111343  ATG *  7    20/21     ATG ATG ATG ATG ATG ATG TTG
   120158  TTG *  7    19/21     TTG TTG TTG ATG TCG TTG TTG
   123010  ACA *  7    19/21     ACA ACA ACA ACA ACA ATA ATA
   141508  CAG *  7    19/21     CAG CCG CAG CAG TAG CAG CAG
   151497  GCA *  7    19/21     GCA GCA GCA GCA AGA GCA GCA
   152274  TTA *  8    22/24     TTA TTA TTA TTA TTA TTA CGA TTA
   164665  GCT *  8    22/24     GCT GCT GCT TCT GTT GCT GCT GCT
   167267  GAT *  8    22/24     GAT GAT GAT GAC GAT GAT GTT GAT
   171214  TTG *  7    19/21     TTG TTG TTG TTG CTG TTG CTG
   189688  AAC *  7    19/21     AAC AAA AAC AAC AAC AAC AGC
   193327  AAC *  7    19/21     AAC AAC AAC AAC AAC AGC AGC
   193521  CAA * 11    30/33     CAA CAA CAA CAA CAA CAT CAA CAA CAG CAA GAA
   202978  CAT *  7    19/21     CAT CAC CAT CAT CAT CAT CAC
   222574  CAG *  7    19/21     CAG CAG CAT CAG CAG CAG CAA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       225155 
 Total number of repeats detected..............       29 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  ATG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      5       5       0       0       0       0       0       0       0       0       0       0       0   
  GCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAG      4       4       0       0       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   1 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   2 AAC +    1 ACA +   1 CAA +   0 GTT +   2 TTG +    0 TGT      =    6 
   2 ATG +    0 TGA +   1 GAT +   2 CAT +   0 ATC +    0 TCA      =    5 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   1 AGC +    5 GCA +   4 CAG +   2 GCT +   1 CTG +    1 TGC      =   14 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   1 CAC +   0 GGT +   0 GTG +    1 TGG      =    2 
   0 GGC +    1 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7301683|gb|AE003766.1|AE003766 Drosophila melanogaster genomic scaffold 142000013386035 section 91 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    13740  CTG *  7    19/21     CTG CTG TTG TTG CTG CTG CTG
    13911  CTG *  8    22/24     CTG CTG CAT CTG CTG CTG CTG CTG
    13940  GCT *  8    22/24     GCT GGT GCT GCT GCT GTT GCT GCT
    15484  CCG *  7    19/21     CCG CCG CCG CCT CCA CCG CCG
    16149  TGC *  8    22/24     TGC TGC TGC TTT TGC TGC TGC TGC
    29280  TCA *  7    19/21     TCA TCA TCA TCA TCG TCT TCA
    34111  CGG *  7    19/21     CGG TGG TGG CGG CGG CGG CGG
    51052  CAT *  7    19/21     CAT CAT CAT CAT GAT CAT CGT
    65446  GGT *  7    19/21     GGT GGT GAT AGT GGT GGT GGT
    95250  CTG * 10    28/30     CTG CTG CTC CTG CTG CTG CTG CTG CTG TTG
    96206  TAT *  8    23/24     TAT TAT TAT TAT TAT TGT TAT TAT
   113837  CAT *  7    20/21     CAT CAT CAT AAT CAT CAT CAT
   131927  AGC * 10    27/30     AGC AGC AGC AGC ATC AGC ATC AGC AGC AAC
   132615  GAT * 12    33/36     GAT GAT GAT GAT GAT GAT GAT GAT GAT GAC GAC GAC
   134635  GTT *  8    22/24     GTT CCT GTT GTT GTT GTT GTT GTT
   139631  CAG * 11    30/33     CAG CAG CAG CAG CAG CAG CAG AAG GAG CAA CAG
   148354  CTG *  7    19/21     CTG CTG TTG CTG GTG CTG CTG
   158492  CAG *  7    19/21     CAG CAG CTG CAG CAG TAG CAG
   175978  CCT *  7    19/21     CCT CTT CCT CCT CAT CCT CCT
   205546  TGA *  7    19/21     TGA TGA TGA TGA TAA TGA TGG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       225894 
 Total number of repeats detected..............       20 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AGC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAG      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CTG      4       3       1       0       0       0       0       0       0       0       0       0       0   
  CGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    1 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   1 GTT +   0 TTG +    0 TGT      =    1 
   0 ATG +    1 TGA +   1 GAT +   2 CAT +   0 ATC +    1 TCA      =    5 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   1 CCT +   0 CTC +    0 TCC      =    1 
   1 AGC +    0 GCA +   2 CAG +   1 GCT +   4 CTG +    1 TGC      =    9 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   1 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   1 CGG +   0 GCC +   1 CCG +    0 CGC      =    2 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7301668|gb|AE003765.1|AE003765 Drosophila melanogaster genomic scaffold 142000013386035 section 90 of 105, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     4390  TGG *  7    19/21     TGG CGG TGG TGG TGG TGG TGT
    12078  ACA *  8    22/24     ACA ACA ATA ACA ACA ACA ACA ACT
    29437  TCC *  7    19/21     TCC TCC TCC TCC TCC TCT TCT
    70121  GCT * 10    27/30     GCT GCT GCT GCT GCG GCT GCT GCT GCG ACT
   108333  GCT *  7    19/21     GCT CCT GCT GCT TCT GCT GCT
   109569  GCA *  7    19/21     GCA GCG GCA GCA GAA GCA GCA
   117826  CAG *  7    19/21     CAG CAG AAG CAG CAT CAG CAG
   128265  CAG *  9    25/27     CAG CAG GAG CAG CAG CAG CAG CAG CAT
   132036  CAG *  8    22/24     CAG CAG CAA CAG GAG CAG CAG CAG
   149241  AGA *  7    19/21     AGA AGA AGA AGA ACT AGA AGA
   160399  CTG *  7    19/21     CTG GTG CTA CTG CTG CTG CTG
   205012  TGC *  8    23/24     TGC TCC TGC TGC TGC TGC TGC TGC
   205048  GAT *  8    22/24     GAT GAT GAT GGC GAT GAT GAT GAT
   224478  GCA * 10    27/30     GCA GCA GCA GCA GCA GCA GGA GCA GGA GAA
   229181  ACG *  8    22/24     ACG ACG ACG ACG ACG ACG ACG AGC
   231560  GGT *  9    25/27     GGT GGT GGT GGC GGT GGT GGT GGT GGG
   235239  GCT *  7    19/21     GCT GCT GCT GTT GCT GTT GCT
   236263  TGC *  9    25/27     TGC TGC TGC TGC TAC TGC TGC TGT TGC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       239098 
 Total number of repeats detected..............       18 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1