Di-Nucleotide Repeats in Genomic Sequences
Di-Nucleotide Repeats in
Drosophila melanogaster Chromosome-Arm-3R Genomic Scaffolds
Genomic Sequence:..
gi|7316099|gb|AE002681.1|AE002681 Drosophila melanogaster genomic scaffold 142000013386043, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7296880|gb|AE003607.1|AE003607 Drosophila melanogaster genomic scaffold 142000013386043 section 8 of 8, complete sequence
Position Repeat Coverage Repeat
10064 TA * 16 29/32 TA TA TA TA TA TA TA AA TA TA TA TA TA TG CA TA
25051 TA * 11 20/22 TA TA TA TA TA TA TA TG TA CA TA
41801 AT * 10 18/20 AT AT AT AT AT AT GT AG AT AT
50887 AT * 11 20/22 AT AT AT AA AT AT AT TT AT AT AT
50920 AT * 26 48/52 AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT CC
-----------------------------------------------------------------------------------------
Total sequence length......................... 95401
Total number of repeats detected.............. 5
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 1 0 0 0 0 0 0 0 0 0 0
15 to 19 0 1 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 1 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 2 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 2 TA = 5
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 0 TG + 0 CA + 0 AC = 0
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7296839|gb|AE003606.1|AE003606 Drosophila melanogaster genomic scaffold 142000013386043 section 7 of 8, complete sequence
Position Repeat Coverage Repeat
25226 TA * 10 18/20 TA TG TA TA TA TA TG TA TA TA
29911 TA * 10 18/20 TA GA AA TA TA TA TA TA TA TA
37969 TA * 15 28/30 TA TA TA TA TA TA TA TA TA TA TT TA CA TA TA
70930 AT * 10 18/20 AT AA AA AT AT AT AT AT AT AT
96014 TC * 13 24/26 TC TT TC TC TC TC TC TC TC TC TA TC TC
107740 TA * 11 20/22 TA TA TA TA TA TA TA TA TG CA TA
174069 TG * 10 18/20 TG TG TG TG TG TA CG TG TG TG
194650 AT * 10 18/20 AT AT AT AT AT AA AT AC AT AT
222475 TG * 10 18/20 TG TG TG TG CG CG TG TG TG TG
267951 AT * 10 18/20 AT AT AT AT AA AT AT AC AT AT
267972 TA * 18 33/36 TA TA TA TG TA TA TG TA TA TA TA TA TA TA CA TA TA TA
268009 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
268033 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
268056 TA * 12 22/24 TA TA TA TA CA TG TA TA TA TA TA TA
269519 AG * 11 20/22 AG AG AA AG AG AG AG AG AG AG AC
269560 AT * 10 18/20 AT AT AT AT AT AT AT AT AG AA
287727 TC * 10 18/20 TC TC TA TC TC TC TG TC TC TC
-----------------------------------------------------------------------------------------
Total sequence length......................... 300275
Total number of repeats detected.............. 17
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 6 4 1 0 0 0 2 0 2 0 0 0
15 to 19 0 2 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 6 6 1 0 0 0 2 0 2 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
6 AT + 6 TA = 12
1 AG + 0 GA + 0 CT + 2 TC = 3
0 GT + 2 TG + 0 CA + 0 AC = 2
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7296808|gb|AE003605.1|AE003605 Drosophila melanogaster genomic scaffold 142000013386043 section 6 of 8, complete sequence
Position Repeat Coverage Repeat
14369 GT * 12 22/24 GT GT GA GT GT GT GT GT GT GT GT GA
20852 GT * 10 18/20 GT GT GT GT GT GT GT GT GC GA
38702 TC * 10 18/20 TC TC TC GC TC TC TA TC TC TC
39833 GT * 57 103/114 GT GT GC GT GT GT GT GT GC GT GT GT GT GT GT GT GT GT GT GT GC GT GT GC GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT TT GT GG TC TA TT
44269 CT * 23 42/46 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT TC CC CT CC CT CT
55279 TA * 32 58/64 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA AA CT GT
55532 AT * 11 20/22 AT AT AT AT AT AT AT AT AA AT AA
183532 CA * 10 18/20 CA CA TA CA CA CA CA AA CA CA
271825 AT * 10 18/20 AT AT AC AT AT AT AT GT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 274591
Total number of repeats detected.............. 9
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 0 0 0 0 1 0 2 1 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 1 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 1 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 1 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 1 0 0 0 1 0 3 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 1 TA = 3
0 AG + 0 GA + 1 CT + 1 TC = 2
3 GT + 0 TG + 1 CA + 0 AC = 4
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7296793|gb|AE003604.1|AE003604 Drosophila melanogaster genomic scaffold 142000013386043 section 5 of 8, complete sequence
Position Repeat Coverage Repeat
5154 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GT GG GT GC
11398 GT * 11 20/22 GT GT GC GT GG GT GT GT GT GT GT
36092 AT * 10 19/20 AT AT AT GT AT AT AT AT AT AT
57662 TC * 11 20/22 TC TC AC TC TC TC TC GC TC TC TC
124300 TG * 11 20/22 TG TG TG GG TG TG GG TG TG TG TG
125164 TG * 19 35/38 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TT GG TC
134245 TA * 11 20/22 TA TT TA TA TA TA TG TA TA TA TA
141971 TA * 10 19/20 TA TA TA TA TA TA TA TA TT TA
168009 AG * 10 18/20 AG AG AG AG AG AG AG AG GG GG
179027 AT * 10 18/20 AT AC AT AT AT AT CT AT AT AT
179048 TA * 10 18/20 TA TA TA GA TA TG TA TA TA TA
188856 CT * 16 29/32 CT CT CT CT CT CT CT CT CT CC CT CT CG CT CT CA
276766 CA * 27 49/54 CA CA CA CA AA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA AT TC
279354 GT * 11 20/22 GT GT AT GT GT TT GT GT GT GT GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 302700
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 3 1 0 0 0 1 3 1 0 0 0
15 to 19 0 0 0 0 0 0 1 0 0 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 1 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 3 1 0 0 1 2 3 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 3 TA = 5
1 AG + 0 GA + 1 CT + 1 TC = 3
3 GT + 2 TG + 1 CA + 0 AC = 6
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7296751|gb|AE003603.1|AE003603 Drosophila melanogaster genomic scaffold 142000013386043 section 4 of 8, complete sequence
Position Repeat Coverage Repeat
18187 AC * 10 18/20 AC CC AC AC AC AC AC AC AT AC
20442 TG * 12 22/24 TG TG TG TG CG TG TG TG TG TG GG TG
25626 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AC TC GC
26343 GA * 12 22/24 GA GA GC GA GA GA GA GA GA GA GA GC
27884 CA * 12 22/24 CA CA CG CA CA CA CA CA CA CA CA TA
28276 TG * 14 26/28 TG TG TG CG TG TG TG TG TG TG TG TG TG TC
47818 TG * 10 18/20 TG CG TG TG TG TC TG TG TG TG
90877 TG * 10 19/20 TG TG TG TG TG TG TG TG TG CG
132316 TA * 11 20/22 TA TA TA TA TA TA TA TA TA TA AT
157486 AG * 13 24/26 AG CG AA AG AG AG AG AG AG AG AG AG AG
157513 GA * 17 31/34 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GG CG
164902 AT * 13 24/26 AT AT AT AT AA AT AT AC AT AT AT AT AT
167799 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC AG AT AC
183831 AT * 10 18/20 AT AC AT TT AT AT AT AT AT AT
197277 CA * 15 28/30 CA GA CA CA CA CA CA CA CA CT CA CA CA CA CA
208809 TG * 10 18/20 TG AG TG TG CG TG TG TG TG TG
248003 TG * 14 26/28 TG TG TG TG TG TG AG TG TG TG TG TG TG CG
251864 TA * 31 56/62 TA TA TA TA TA GA TA TA TA TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT GA AA TC
267348 TA * 10 18/20 TA TA TA TA TA TA TA TA TA CT
284432 TG * 16 29/32 TG AG TG TG TG TG TG TG TG TG TG CG TG TG AG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 294507
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 2 1 1 3 1 6 0 0 0 0 0
15 to 19 0 0 0 1 0 1 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 1 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 3 1 2 3 2 7 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 3 TA = 5
1 AG + 2 GA + 0 CT + 0 TC = 3
0 GT + 7 TG + 2 CA + 3 AC = 12
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7296683|gb|AE003602.1|AE003602 Drosophila melanogaster genomic scaffold 142000013386043 section 3 of 8, complete sequence
Position Repeat Coverage Repeat
5619 TA * 10 18/20 TA TT TA TA TA CA TA TA TA TA
37192 AG * 20 37/40 AG AG CG AA AG AG AG AG AG AG AG AG AG AG AG AG AG AG AA AG
37234 AG * 21 38/42 AG CG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG TG TC
59036 GT * 10 18/20 GT CT CT GT GT GT GT GT GT GT
77554 CA * 10 18/20 CA CA CA AA CA CA CA CA CA GA
90164 GT * 12 22/24 GT GT AT GT GT GT GT GT GT GC GT GT
99615 TA * 10 18/20 TA TA TA CC TA TA TA TA TA TA
125594 AC * 11 20/22 AC AG AC AC AC AC AC AA AC AC AC
125888 CT * 12 22/24 CT CT CT CT CT CT CT CT CG CT CG CT
131231 AT * 10 18/20 AT AT AT AT AC AT AC AT AT AT
138302 AC * 10 18/20 AC AG GC AC AC AC AC AC AC AC
187126 TA * 13 25/26 TA TG TA TA TA TA TA TA TA TA TA TA TA
190947 GT * 10 18/20 GT GC GA GT GT GT GT GT GT GT
215481 TG * 10 18/20 TG TG TG TG TG TG TG CG AG TG
219590 TC * 10 18/20 TC TC TC TT TC TC TC TC TC CC
221074 CA * 10 18/20 CA CG CA CA CA CA CC CA CA CA
227261 TC * 10 18/20 TC TC TC TT GC TC TC TC TC TC
229432 TA * 10 18/20 TA TA TA TA TA CA TA TA CA TA
229917 TC * 11 20/22 TC GC TC TC TC TC TC TC TC TA TC
236557 AT * 10 18/20 AT AT AT AT AT AT AT AT AT TC
-----------------------------------------------------------------------------------------
Total sequence length......................... 297266
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 4 0 0 2 2 1 3 3 1 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 2 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 4 2 0 2 2 1 3 3 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 4 TA = 6
2 AG + 0 GA + 1 CT + 3 TC = 6
3 GT + 1 TG + 2 CA + 2 AC = 8
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7296642|gb|AE003601.1|AE003601 Drosophila melanogaster genomic scaffold 142000013386043 section 2 of 8, complete sequence
Position Repeat Coverage Repeat
3596 AG * 10 18/20 AG AG AC AG GG AG AG AG AG AG
7310 AC * 10 18/20 AC GC AG AC AC AC AC AC AC AC
38683 CT * 10 19/20 CT CT CT CT CT CT CT CT TT CT
61483 GT * 10 18/20 GT GC GA GT GT GT GT GT GT GT
66960 GT * 12 22/24 GT GT GT GC GT GT GC GT GT GT GT GT
132659 CA * 10 18/20 CA CA CA CA CA CA GA CA CA CC
133393 CA * 11 20/22 CA CA CA CA CA CT CG CA CA CA CA
143729 CA * 10 18/20 CA CA CA CA CA AA CA CA CA AA
159267 CA * 16 30/32 CA CA CA AA CA CA CA CA CA CA CA CA CA CA CA CG
178213 CA * 13 24/26 CA CG CA CA CA CA CA CA CA CA TA CA CA
225331 AT * 15 27/30 AT AC AT AT AT AT AT AT AT GT AT AT AT AT AG
226143 AT * 16 29/32 AT AT AT AT AT AT AT AA AT AA AT AT AT AT AT TT
238906 CA * 10 18/20 CA CA CA CA CG CA CA CA CA CT
254486 TA * 10 18/20 TA AA TA TA TA TA TA TA TA TT
296148 AT * 10 18/20 AT AT AT AT AG GT AT AT AT AT
297588 AT * 10 18/20 AT TT AT AT AC AT AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 303626
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 1 1 0 1 5 0 2 0 1 0 0
15 to 19 2 0 0 0 0 1 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 1 1 0 1 6 0 2 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 1 TA = 5
1 AG + 0 GA + 1 CT + 0 TC = 2
2 GT + 0 TG + 6 CA + 1 AC = 9
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7296607|gb|AE003600.1|AE003600 Drosophila melanogaster genomic scaffold 142000013386043 section 1 of 8, complete sequence
Position Repeat Coverage Repeat
7376 TC * 12 22/24 TC TC TC TT TC TC TC TC TC TC TC CC
102947 AT * 12 22/24 AT AT AT AT AT AT AT AT GT AT AT GT
114759 TA * 10 18/20 TA TC TA TA TA TC TA TA TA TA
114781 TA * 11 20/22 TA TA GA TA TA TA TA TA TA TC TA
175976 AG * 16 29/32 AG AG AA AG AG AG AG AG AG AG AG AG AG AG AG CT
188364 GT * 10 18/20 GT GT GT GT GT GT GG GT GT AT
189413 AT * 20 36/40 AT AT AC AT AT AT AT AT AT AT AA AT AT AT AT AT AT AT AT GG
189762 CA * 10 18/20 CA CA CA CG CA CA CA CA CA AA
193387 GT * 10 18/20 GT GT GT CT GG GT GT GT GT GT
196870 AT * 11 20/22 AT GA AT AT AT AT AT AT AT AT AT
242330 AT * 18 34/36 AT AT AT AT AT AT AT AT AT AT AA AT AT AT AT AT AT AA
245532 TG * 10 18/20 TG TG TG TG TG TG AG CG TG TG
246445 GT * 13 25/26 GT GT GT GT GT GT GT GT GT GT GT GC GT
252858 CA * 11 20/22 CA CG CA CA CA CA CA CA CA CG CA
266247 CA * 10 18/20 CA CC CA CA CA CA CA CA CT CA
274507 CA * 10 18/20 CA CA CA CA TA CA CA CA TA CA
280269 AT * 10 18/20 AT AT AT AT AT AT AT AT AA AA
-----------------------------------------------------------------------------------------
Total sequence length......................... 291545
Total number of repeats detected.............. 17
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 2 0 0 0 4 1 3 1 0 0 0
15 to 19 1 0 1 0 0 0 0 0 0 0 0 0
20 to 24 1 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 2 1 0 0 4 1 3 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 2 TA = 7
1 AG + 0 GA + 0 CT + 1 TC = 2
3 GT + 1 TG + 4 CA + 0 AC = 8
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7316097|gb|AE002699.1|AE002699 Drosophila melanogaster genomic scaffold 142000013386040, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298913|gb|AE003675.1|AE003675 Drosophila melanogaster genomic scaffold 142000013386040 section 5 of 5, complete sequence
Position Repeat Coverage Repeat
7564 AT * 10 18/20 AT AT AT AC AT AT AT AT AT TT
12527 AT * 13 24/26 AT AT AT AT AT AT AT AT AT AT AT GT GT
13395 AT * 10 18/20 AT AT AT AC AT AT GT AT AT AT
18251 TA * 10 18/20 TA TA TA TA TA TA TT TA TT TA
23378 TA * 10 18/20 TA TA TA TA TA TT TA TA TA TT
31603 AT * 10 18/20 AT AT AT AT GT AT GT AT AT AT
34249 TA * 10 18/20 TA AG TA TA TA TA TA TA TA TA
34969 TG * 10 18/20 TG GG GG TG TG TG TG TG TG TG
35611 TG * 10 18/20 TG TA TG TG TG TG TG TG TA TG
41199 TG * 10 18/20 TG TG TG TG TG TT TG TG TT TG
44577 AT * 10 18/20 AT AT AT GT AT AT AT AG AT AT
55980 CA * 10 18/20 CA CG CT CA CA CA CA CA CA CA
56741 TG * 10 18/20 TG TG TG TG TT TG TG TC TG TG
61185 TG * 16 29/32 TG TG TG TG TG TG TG TG TG TG TG TG TG TT TT TT
63470 GT * 48 88/96 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT AT GT GT GT GT GT GT GT GT AT GT GT GT GT GT GT AT GT GT GC GA AC GG
66127 TG * 36 66/72 TG CG TG TG TT TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TT GG CT
70384 GT * 13 24/26 GT GA GT GT GT GT GT GT GT GT GT TT GT
77230 AG * 13 24/26 AG AG AG AG TG AG AG AG AG AG AG GG AG
90559 AT * 10 18/20 AT AT TT AT AT AT AT AT TT AT
96658 AC * 10 18/20 AC AC GC GC AC AC AC AC AC AC
126025 AC * 13 24/26 AC AC CT AC AC AC AC AC AC AC AC AC AC
128722 CA * 11 20/22 CA CA TA CA CG CA CA CA CA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 145786
Total number of repeats detected.............. 22
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 6 3 1 0 2 2 4 1 0 0 0 0
15 to 19 0 0 0 0 0 0 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 1 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 1 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 6 3 1 0 2 2 6 2 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
6 AT + 3 TA = 9
1 AG + 0 GA + 0 CT + 0 TC = 1
2 GT + 6 TG + 2 CA + 2 AC = 12
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298877|gb|AE003674.1|AE003674 Drosophila melanogaster genomic scaffold 142000013386040 section 4 of 5, complete sequence
Position Repeat Coverage Repeat
11477 AT * 19 35/38 AT AT AT AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT TA
36521 TG * 10 18/20 TG AG TG TG TG TC TG TG TG TG
64950 TG * 10 19/20 TG TG TG TG TG TG TG AG TG TG
96994 TA * 13 24/26 TA TA TA TA TA TA TA TA TT TA CA TA TA
155953 GT * 13 24/26 GT GT GT GT GT GA GT GT GT GT GT GT GA
156269 TA * 30 54/60 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA CA TA CA TA TG AC TA TA TA TA TC
156773 CT * 10 18/20 CT CT CC CT CT CT CT CC CT CT
160861 CA * 16 30/32 CA CA CA CA CA CA CA CA CA CA CA CA CG CG CA CA
181530 TA * 11 20/22 TA TA TA CA TA TA TG TA TA TA TA
211199 TG * 15 28/30 TG TG TG TG TG TG TG TG TG TG TG TG TG TT GG
220795 GA * 13 24/26 GA GA GA GA CA GA GG GA GA GA GA GA GA
240371 CA * 12 22/24 CA GA CA CA CA AA CA CA CA CA CA CA
247315 CT * 12 22/24 CT CG TT CT CT CT CT CT CT CT CT CT
252538 GT * 10 18/20 GT GT GT GC GT GT GT GG GT GT
252664 AC * 16 30/32 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC TT
278445 GT * 10 18/20 GT GT GT GT GT GT GT GT GT AG
-----------------------------------------------------------------------------------------
Total sequence length......................... 298028
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 2 0 1 0 1 2 3 0 2 0 0
15 to 19 1 0 0 0 1 1 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 1 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 3 0 1 1 2 3 3 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 3 TA = 4
0 AG + 1 GA + 2 CT + 0 TC = 3
3 GT + 3 TG + 2 CA + 1 AC = 9
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298860|gb|AE003673.1|AE003673 Drosophila melanogaster genomic scaffold 142000013386040 section 3 of 5, complete sequence
Position Repeat Coverage Repeat
25821 AT * 13 24/26 AT AT AT AA AT CT AT AT AT AT AT AT AT
48841 TG * 10 18/20 TG TG TG TG TG TG TG GG TG GG
48896 GA * 10 18/20 GA GA GC GA GA GA GA GA GA GC
54276 AC * 10 18/20 AC GC AC AC AC AC AC AC AC GC
56852 CA * 22 40/44 CA CG CA CA CA CA CA CA CA CA CA CA CA CA CA AA CA CA CA CA CA TG
75049 CA * 13 24/26 CA CA CA TA CA CA CA CA CT CA CA CA CA
81772 TC * 12 22/24 TC TG TC TC TC TC TC TC TC TC TC CC
85527 GA * 10 18/20 GA GA AA GA GA GA GA GT GA GA
89130 CA * 13 24/26 CA TA CA CA CA CA CA CA CA CA CG CA CA
96042 CA * 17 31/34 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CC CC AA
97640 TC * 12 22/24 TC CC TC TC TC TC TC TC TC TC TT TC
103080 AT * 11 20/22 AT AT AT AC AT AT AT AT AT GT AT
107870 CA * 12 23/24 CA CA CA CA GA CA CA CA CA CA CA CA
110534 AC * 10 18/20 AC AT TC AC AC AC AC AC AC AC
110758 CA * 11 20/22 CA CA CA CA CT CA CA CA CA GA CA
143696 AT * 16 29/32 AT AT AT AT AT GT AT AT GT AT AT AT AT AT AT AA
150617 GT * 10 18/20 GT GT GC GT GT GT GT GT GT TT
163045 AC * 15 27/30 AC AC AC AC AC AA AC AC AC AC AC AC AC AC TT
163908 TG * 11 20/22 TG AG TG TG TG TG TG TG TA TG TG
171419 AG * 20 36/40 AG AG AA AG AG AG AC AG AG AG AG AG AG AG AG AG AG AG AG TT
189277 TA * 10 18/20 TA TA TA TA AA TA AA TA TA TA
228718 AT * 11 20/22 AT AT AT AT AT AT AC AT AT AT AA
237844 AT * 10 18/20 AT AT AT AT AT AT AT AT TT TT
276667 TC * 20 36/40 TC GC TC TC TC TA TC TC TC TC TC TC TC TC TC TC GC TC TC TG
290570 AG * 13 24/26 AG AG AA AG AG AA AG AG AG AG AG AG AG
294289 AT * 10 18/20 AT AT AA AT AT AA AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 309357
Total number of repeats detected.............. 26
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 1 1 2 2 4 2 1 2 0 0 0
15 to 19 1 0 0 0 1 1 0 0 0 0 0 0
20 to 24 0 0 1 0 0 1 0 0 1 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 6 1 2 2 3 6 2 1 3 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
6 AT + 1 TA = 7
2 AG + 2 GA + 0 CT + 3 TC = 7
1 GT + 2 TG + 6 CA + 3 AC = 12
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298812|gb|AE003672.1|AE003672 Drosophila melanogaster genomic scaffold 142000013386040 section 2 of 5, complete sequence
Position Repeat Coverage Repeat
6252 AT * 21 38/42 AT AC AT CT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT TT
50925 AG * 11 20/22 AG AG AG GG AG TG AG AG AG AG AG
82026 GT * 11 20/22 GT AT CT GT GT GT GT GT GT GT GT
82232 GT * 10 18/20 GT GT GT GT AT GT GT GC GT GT
83651 TG * 23 42/46 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG AG TG TA TG TG TG TG GA
90217 GT * 11 20/22 GT CT GT GC GT GT GT GT GT GT GT
98396 AC * 10 18/20 AC AA AC AC AC GC AC AC AC AC
98665 CA * 11 20/22 CA CA CG TA CA CA CA CA CA CA CA
104342 CT * 11 20/22 CT CT CG CT CT CT CT CT CT TT CT
105538 CA * 12 22/24 CA CA AG CA CA CA CA CA CA CA CA CA
121256 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AC AT AT
178260 CA * 18 33/36 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA AA TC
188913 AT * 23 42/46 AT AT AA AT AT AT AT AT AT AT AT AT AT AT GT AT AT AT GT AT GT AT AT
190285 CA * 12 22/24 CA CA AA CA CA CA TA CA CA CA CA CA
199613 AG * 10 18/20 AG AG AG AG AG AG AG AG TG TG
200468 CA * 10 18/20 CA CA CC GA CA CA CA CA CA CA
200503 AG * 10 18/20 AG AG AG AG GG AG AG AG AG AC
228230 AT * 12 22/24 AT AC AT AT AT AT AT AT AC AT AT AT
240578 AT * 10 18/20 AT AT AT AT AT AG AT AT AT AG
241557 AT * 11 20/22 AT AT AT AT AT AT AT AT TG AT AT
266032 TA * 32 58/64 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA CT TG CA GC
274226 AT * 10 18/20 AT AT TT AT TT AT AT AT AT AT
274266 CA * 11 20/22 CA TA CA CA CA CA CA CA CA CA TA
278030 TC * 10 18/20 TC TC TC AC TC TC TT TC TC TC
278675 GA * 11 20/22 GA GA GA CA GG GA GA GA GA GA GA
284141 TG * 31 57/62 TG TG GA TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TT AT
287228 CT * 13 24/26 CT TT GT CT CT CT CT CT CT CT CT CT CT
-----------------------------------------------------------------------------------------
Total sequence length......................... 301601
Total number of repeats detected.............. 27
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 0 3 1 2 5 0 3 1 2 0 0
15 to 19 0 0 0 0 0 1 0 0 0 0 0 0
20 to 24 2 0 0 0 0 0 1 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 1 0 0 0 0 1 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 6 1 3 1 2 6 2 3 1 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
6 AT + 1 TA = 7
3 AG + 1 GA + 2 CT + 1 TC = 7
3 GT + 2 TG + 6 CA + 2 AC = 13
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298787|gb|AE003671.1|AE003671 Drosophila melanogaster genomic scaffold 142000013386040 section 1 of 5, complete sequence
Position Repeat Coverage Repeat
9518 GA * 12 22/24 GA GA GA GA GA GA GA GA GA CA GA AA
14346 CA * 10 18/20 CA CA CA CA CA CA CA CA CA TC
26354 GT * 12 22/24 GT GG GT GT GT GT GT GT GT GT GA GT
43347 AT * 52 94/104 AT AT AT AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA AT GT AT AT AT AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT TA TA TT AA
73288 CA * 17 31/34 CA AG CA CA CA CA CA CA CA CA CA CA CA CA CA CA GA
126660 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG AA
144003 CA * 25 45/50 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA GA CC CA CA CA GA GG
154140 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AT TA
204984 GA * 10 18/20 GA GA GA AA GA GA GA GA GA GT
211034 CT * 10 18/20 CT CT CT CT CT CT CT CT CT AC
228572 CA * 10 19/20 CA CA CA CA CA CC CA CA CA CA
235540 CT * 14 26/28 CT CT CT GT CT CT CT CT CT CT CT CT CT CA
237977 CA * 13 25/26 CA CG CA CA CA CA CA CA CA CA CA CA CA
264099 TG * 10 18/20 TG TG TG TG TG TG TG TG TT AG
271186 GT * 10 18/20 GT GT GT GT GT GT GT GT GT AG
271784 GT * 10 18/20 GT AT GT GT GT GT GT AT GT GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 309023
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 0 0 2 0 3 2 3 0 2 0 0
15 to 19 0 0 0 0 0 1 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 1 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 1 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 0 0 2 0 5 2 3 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 0 TA = 2
0 AG + 2 GA + 2 CT + 0 TC = 4
3 GT + 2 TG + 5 CA + 0 AC = 10
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7316093|gb|AE002708.1|AE002708 Drosophila melanogaster genomic scaffold 142000013386035, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7302106|gb|AE003780.1|AE003780 Drosophila melanogaster genomic scaffold 142000013386035 section 105 of 105, complete sequence
Position Repeat Coverage Repeat
15645 CA * 16 29/32 CA CA CA CA CA CA CA CA CA CA CA CA CA CC CC CC
40689 TG * 10 18/20 TG TG TG TT TG TC TG TG TG TG
57679 TG * 10 18/20 TG TG TG TT AG TG TG TG TG TG
107159 TA * 10 18/20 TA TT TA TA TA CA TA TA TA TA
175190 CT * 10 18/20 CT CT CT CT CT CT CT CT CT TA
182216 CT * 10 18/20 CT CT CT CT CT CT CT CT CT TA
223585 AT * 10 18/20 AT AT AT AT AT AT AT AT AT TC
227096 AT * 20 36/40 AT AT GG AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 249284
Total number of repeats detected.............. 8
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 1 0 0 0 0 2 0 0 2 0 0
15 to 19 0 0 0 0 0 1 0 0 0 0 0 0
20 to 24 1 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 1 0 0 0 1 2 0 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 1 TA = 3
0 AG + 0 GA + 2 CT + 0 TC = 2
0 GT + 2 TG + 1 CA + 0 AC = 3
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7302062|gb|AE003779.1|AE003779 Drosophila melanogaster genomic scaffold 142000013386035 section 104 of 105, complete sequence
Position Repeat Coverage Repeat
20861 GT * 11 20/22 GT GT GT GT GT GT AT GC GT GT GT
40866 TG * 12 22/24 TG TG CG TG TG TG TG TA TG TG TG TG
46062 CT * 15 28/30 CT CT CT CT CT CT CT CT CT CT AA CT CT CT CT
72464 GA * 15 27/30 GA GA GA GA GA GA GA GA GA GA GA GA GA GC AC
72673 TG * 14 26/28 TG TG TG TG TG CG TG TG TG TG TG TG TG CG
77457 CA * 19 35/38 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA TA GC CA
87085 AT * 13 24/26 AT CG AT AT AT AT AT AT AT AT AT AT AT
111961 TG * 10 18/20 TG TT TG TG TG TG TA TG TG TG
113103 TA * 16 29/32 TA AA TA TA TA TA TA TA TA TA TA CA TA TA TA TT
123444 TC * 10 18/20 TC TG CC TC TC TC TC TC TC TC
133271 TG * 10 18/20 TG TG TG TG CG AG TG TG TG TG
134327 TG * 11 20/22 TG TT TG TG TG CG TG TG TG TG TG
135533 GT * 10 18/20 GT GT GT GT TT GT GT GT GT GC
135988 GT * 10 18/20 GT GT AT GT GT GT GT TT GT GT
204116 GT * 10 18/20 GT GT GT GT GT GT GT GT GT TC
-----------------------------------------------------------------------------------------
Total sequence length......................... 232064
Total number of repeats detected.............. 15
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 0 0 0 0 0 5 4 1 0 0 0
15 to 19 0 1 0 1 0 1 0 0 0 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 1 0 1 0 1 5 4 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 1 TA = 2
0 AG + 1 GA + 1 CT + 1 TC = 3
4 GT + 5 TG + 1 CA + 0 AC = 10
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7302043|gb|AE003778.1|AE003778 Drosophila melanogaster genomic scaffold 142000013386035 section 103 of 105, complete sequence
Position Repeat Coverage Repeat
6398 CA * 19 35/38 CA CG CA GA CA CA CA CA CA CA CA CA CA CA CA CA CA GA CA
7151 TA * 12 22/24 TA TA TA AA TC TA TA TA TA TA TA TA
63307 AC * 12 23/24 AC AC AC AC CC AC AC AC AC AC AC AC
67734 CA * 12 22/24 CA CA CA CG CA CA CA CA CA CA CA TA
78815 CA * 15 27/30 CA CA CA CA CA CA CA CA CA CA CA CA CA CG AT
82024 TA * 13 25/26 TA TA TA TA TA TA TA TA TA TA TA TA TN
162523 TG * 10 19/20 TG TG TG TG TG TG TG TG TG TT
206895 CA * 10 18/20 CA CA GA CA CA CA CT CA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 225108
Total number of repeats detected.............. 8
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 2 0 0 1 2 1 0 0 0 0 0
15 to 19 0 0 0 0 0 2 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 2 0 0 1 4 1 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 2 TA = 2
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 1 TG + 4 CA + 1 AC = 6
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7302015|gb|AE003777.1|AE003777 Drosophila melanogaster genomic scaffold 142000013386035 section 102 of 105, complete sequence
Position Repeat Coverage Repeat
2300 CA * 10 19/20 CA CC CA CA CA CA CA CA CA CA
11761 GT * 11 20/22 GT GT GT GT GT GT GT GT GT TT TT
17793 AC * 12 22/24 AC AG AC AG AC AC AC AC AC AC AC AC
24023 AT * 10 18/20 AT AT AT AT TA AT AT AT AT AT
24043 TA * 10 18/20 TA TA AA TA TA TA TA AA TA TA
33241 CA * 10 18/20 CA GT CA CA CA CA CA CA CA CA
34851 CA * 10 18/20 CA CA CA CA CA CG CA CA CT CA
41299 AT * 13 24/26 AT AT AT AT AT AT AT AT AT AT AT AC AA
43438 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TG TG TG GT TG TC
58413 AT * 11 20/22 AT AC AC AT AT AT AT AT AT AT AT
62484 AG * 16 30/32 AG AG CG AG AG AG AG AG AG AG AG AG AG AG AG GG
69457 AT * 10 18/20 AT AT GT GT AT AT AT AT AT AT
89531 TG * 11 20/22 TG TG TG TG TG CG TG CG TG TG TG
96086 AT * 10 18/20 AT AT AT AT AC AT AT AC AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 232000
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 1 0 0 1 3 1 1 0 0 0 0
15 to 19 0 0 1 0 0 0 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 1 1 0 1 3 2 1 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 1 TA = 6
1 AG + 0 GA + 0 CT + 0 TC = 1
1 GT + 2 TG + 3 CA + 1 AC = 7
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301994|gb|AE003776.1|AE003776 Drosophila melanogaster genomic scaffold 142000013386035 section 101 of 105, complete sequence
Position Repeat Coverage Repeat
5849 GA * 10 18/20 GA GT GA GA GA GA GC GA GA GA
25004 TA * 21 38/42 TA TA TA TA TA TA TA TA TA TA TA TG TA AA TA TA TG TA TA TA TG
35365 TG * 11 20/22 TG AG TG TG TA TG TG TG TG TG TG
36874 TG * 10 18/20 TG TG CG TG TG TG TG TG TG TT
43835 CA * 13 24/26 CA CA CA TA CA CA TA CA CA CA CA CA CA
51221 AT * 10 18/20 AT AT AC AT AT AT GT AT AT AT
62566 GT * 10 18/20 GT GT GT GT GT GT GT GT AT GA
80444 CA * 17 31/34 CA TA CA CA CA CA CA CA CA CA CA CA CA CA CA CC GA
97978 CA * 10 18/20 CA CA CC CA CT CA CA CA CA CA
120703 CA * 12 22/24 CA CA CA AA CA CA CA CA CA TA CA CA
132268 CA * 10 18/20 CA CA CA CA AA CA CA CA CA CT
148865 TA * 50 90/100 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA AA TA TA TA TA TA TA GA TA GG GG AG TA GG
152208 AG * 10 18/20 AG AG AG AG AG AG CG GG AG AG
153005 TC * 16 30/32 TC GC TC TC TC TC TT TC TC TC TC TC TC TC TC TC
153901 CA * 10 18/20 CA CA CA AA CA CA CG CA CA CA
165141 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AT GC
191634 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA CA AC
194663 AT * 10 19/20 AT AT AT AT AT AT AT TT AT AT
195031 AC * 10 19/20 AC AC GC AC AC AC AC AC AC AC
213567 AT * 14 26/28 AT GC AT AT AT AT AT AT AT AT AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 225879
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 0 1 1 1 6 2 1 0 0 0 0
15 to 19 0 0 0 0 0 1 0 0 1 0 0 0
20 to 24 0 1 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 1 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 2 1 1 1 7 2 1 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 2 TA = 6
1 AG + 1 GA + 0 CT + 1 TC = 3
1 GT + 2 TG + 7 CA + 1 AC = 11
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301969|gb|AE003775.1|AE003775 Drosophila melanogaster genomic scaffold 142000013386035 section 100 of 105, complete sequence
Position Repeat Coverage Repeat
3291 AC * 10 18/20 AC GC AC AC CC AC AC AC AC AC
9103 CT * 10 18/20 CT CT CT CT CT CT CT CT CT TA
16125 CT * 10 18/20 CT CT CT CT CT CT CT CT CT TA
91575 CT * 12 22/24 CT CT CT AT CT CT AT CT CT CT CT CT
93663 CT * 11 20/22 CT AT CT CT CT CT CC CT CT CT CT
105163 TG * 13 25/26 TG TG TG TG TG TG TG TG TG TG TG TG TA
117726 AT * 11 20/22 AT AT AT AT AT AT AT AT AT GT GT
120113 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AT CA
129616 CA * 14 26/28 CA CA CA CA CA CA CA CA CG CA CA CA CA CT
132764 AC * 10 18/20 AC AC TC AC AC AC GC AC AC AC
133038 CA * 11 20/22 CA CA CA AA CA CA CA CA CA CA CT
133596 GT * 11 20/22 GT GT GT GT GT GT GT CT CT GT GT
135545 AC * 11 20/22 AC AC AC AC AC AC AC TC GC AC AC
157492 GT * 10 18/20 GT GT GT GT CT GT GT GC GT GT
210563 CT * 10 19/20 CT CT CT CT CT CT CT CT CT TT
-----------------------------------------------------------------------------------------
Total sequence length......................... 236109
Total number of repeats detected.............. 15
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 0 0 0 3 2 1 2 0 5 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 0 0 0 3 2 1 2 0 5 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 0 TA = 2
0 AG + 0 GA + 5 CT + 0 TC = 5
2 GT + 1 TG + 2 CA + 3 AC = 8
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301938|gb|AE003774.1|AE003774 Drosophila melanogaster genomic scaffold 142000013386035 section 99 of 105, complete sequence
Position Repeat Coverage Repeat
3517 AT * 14 26/28 AT AT AC AT GT AT AT AT AT AT AT AT AT AT
25047 GT * 12 23/24 GT GT GT GT GT GT GT GT GT GT GT GC
107136 TA * 12 22/24 TA TG TA AA TA TA TA TA TA TA TA TA
107475 GT * 10 18/20 GT GT GT GT GT GC GT GT GT GC
113581 TG * 10 19/20 TG TG TG TG TG TG TG TG TG CG
123170 GT * 11 20/22 GT GT GT GT GT AT GT GT GT GT CT
127652 TG * 13 24/26 TG CA TG TG TG TG TG TG TG TG TG TG TG
145433 CA * 11 20/22 CA CG CA CA CA CA CA CA CA CA CT
181981 TG * 12 22/24 TG TG TG TG AG TG CG TG TG TG TG TG
185748 GA * 11 20/22 GA GA GA GA GC GA GA AA GA GA GA
190854 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GT CT GT GA
210809 AC * 12 22/24 AC CC AC AC AC AC AC GC AC AC AC AC
219436 TG * 11 21/22 TG TG TG TG TG CG TG TG TG TG TG
229894 AC * 14 26/28 AC AC GC AC AC AC AC AC AC AC AT AC AC AC
233645 GT * 16 30/32 GT GT GT GT GT GT GT GT GT GT GT GT GC GT GT GG
237697 TG * 10 18/20 TG TG TG GG TT TG TG TG TG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 239003
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 1 0 1 2 1 5 4 0 0 0 0
15 to 19 0 0 0 0 0 0 0 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 1 0 1 2 1 5 5 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 1 TA = 2
0 AG + 1 GA + 0 CT + 0 TC = 1
5 GT + 5 TG + 1 CA + 2 AC = 13
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301915|gb|AE003773.1|AE003773 Drosophila melanogaster genomic scaffold 142000013386035 section 98 of 105, complete sequence
Position Repeat Coverage Repeat
11222 TG * 11 20/22 TG TG TG TG TT TT TG TG TG TG TG
11741 AT * 11 20/22 AT CT AT AT AT AT AT AT AT AT AC
24686 CA * 17 31/34 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CT CA GC
50399 AT * 10 18/20 AT AT AT AC AT AC AT AT AT AT
53897 CA * 11 20/22 CA CA CA CA CA CA CA CA CC AA CA
59985 AC * 11 21/22 AC GC AC AC AC AC AC AC AC AC AC
61704 AT * 10 18/20 AT AA AT AT AT AT AT AT AT TT
65591 CA * 11 20/22 CA CC CA CA CA CA CA CA CA CC CA
68475 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT AT TT
77307 CT * 12 22/24 CT CT CT CT CT CT CT CT AT CT CT CA
80163 TG * 12 22/24 TG AA TG TG TG TG TG TG TG TG TG TG
97147 TA * 11 20/22 TA CA TA TA TA TA TA TA TA TC TA
104276 AT * 10 18/20 AT AT AA AT AT AT AT AT AT AC
108273 TG * 12 23/24 TG TG TG TG TG TG TG TG TG TG TT TG
112640 TA * 11 20/22 TA TA TA TA TA TA TG TA TA TA TT
120386 AT * 12 22/24 AT AT AT AT AT AT AT AC AT AT AA AT
132436 AT * 10 19/20 AT AT AT AT AT GT AT AT AT AT
134982 TA * 13 25/26 TA TA TA TA TA TA TA TA TA TA TA TC TA
140874 TA * 12 22/24 TA GA TA TA TA TA TA TA TA TA TA TT
142204 CA * 30 55/60 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA AA CA CA CA TG GT
142885 TA * 13 24/26 TA TA TA TA TA TA TA TA TA TA TA TA GT
147043 GT * 11 21/22 GT TT GT GT GT GT GT GT GT GT GT
147179 GT * 17 31/34 GT GA CT GT GT GT GT GT GT GT GT GT GT GT GT GT AT
153027 TG * 12 22/24 TG TG TG TG TG TG TA TG TG TG TG TT
163809 CA * 12 23/24 CA CA CA CA CA CA CA CA CA CA CA CT
164859 AC * 11 21/22 AC AC AC AC TC AC AC AC AC AC AC
165674 CA * 12 22/24 CA CT CA CC CA CA CA CA CA CA CA CA
182149 CT * 10 18/20 CT CT CC CA CT CT CT CT CT CT
187794 TG * 13 24/26 TG TG TG TG GG TG TG TG TC TG TG TG TG
192676 AT * 10 18/20 AT AT AT AT AT AA AT AC AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 226905
Total number of repeats detected.............. 30
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 7 5 0 0 2 4 5 2 0 2 0 0
15 to 19 0 0 0 0 0 1 0 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 1 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 7 5 0 0 2 6 5 3 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
7 AT + 5 TA = 12
0 AG + 0 GA + 2 CT + 0 TC = 2
3 GT + 5 TG + 6 CA + 2 AC = 16
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301871|gb|AE003772.1|AE003772 Drosophila melanogaster genomic scaffold 142000013386035 section 97 of 105, complete sequence
Position Repeat Coverage Repeat
41655 GT * 10 18/20 GT GT GT GT GT GC GT GT GG GT
82291 GT * 10 18/20 GT GT GT GC GA GT GT GT GT GT
94261 TG * 12 23/24 TG TG TG TG TG TG TG TG TG TG TG TA
100145 CT * 10 18/20 CT CT CC CT CT CC CT CT CT CT
113000 GT * 15 27/30 GT GT GT GT GT GT GT GT GT GT GC GT GT GC TT
113880 GT * 12 22/24 GT GT GA GT GT GT GT GT GT GA GT GT
121896 CA * 11 20/22 CA CA CA CA CG CA CA CA CA CA CT
122097 TG * 10 18/20 TG TG TG TG TG TT TG TG TG GG
140756 TA * 11 20/22 TA TA TA CA TA AA TA TA TA TA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 228448
Total number of repeats detected.............. 9
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 1 0 0 0 1 2 3 0 1 0 0
15 to 19 0 0 0 0 0 0 0 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 1 0 0 0 1 2 4 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 1 TA = 1
0 AG + 0 GA + 1 CT + 0 TC = 1
4 GT + 2 TG + 1 CA + 0 AC = 7
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301817|gb|AE003771.1|AE003771 Drosophila melanogaster genomic scaffold 142000013386035 section 96 of 105, complete sequence
Position Repeat Coverage Repeat
15496 TG * 10 18/20 TG TG TG CG TG TG TG TG TG CG
26264 AG * 12 22/24 AG AG AG AG AG AG AG AG AG AG AA GG
30216 CT * 10 18/20 CT CT CT CA CT CT TT CT CT CT
30520 AG * 15 28/30 AG AG AG AG GG AG AG AG AG AG AG AG AG CG AG
35212 TG * 11 20/22 TG TG TG CG TG TG TG TG TG TG GG
39126 CT * 11 20/22 CT CT CT CT GT CT CT CT CT CT CA
40665 AG * 17 31/34 AG AG AG AG AG AG AG AG AG AG AG AG CC AG AG AG CG
41428 AT * 11 20/22 AT AT AT AT AT GT AC AT AT AT AT
44968 TG * 13 24/26 TG TA TG TG TG TG TG TG TG TG TG TG TA
50401 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TG TG TG TT TT TT
51756 AT * 13 24/26 AT AT AT AT AT AT AT AT GT GT AT AT AT
52049 AT * 10 18/20 AT AT AT AT AT AT GA AT AT AT
54285 GT * 10 19/20 GT AT GT GT GT GT GT GT GT GT
54906 AT * 12 22/24 AT AT GT AT AT AT AT AC AT AT AT AT
55304 AT * 17 31/34 AT AT AC AT AT AT AT AT AT AT AT AT AT GT AA AT AT
107534 TG * 18 33/36 TG TG TG TG TG TG TG TG TG TG TG TG TG TT TG AG TA TG
143021 CA * 10 18/20 CA GA CA CA CA CA CA CA CG CA
159531 TA * 11 20/22 TA AA TA TA TA TA TA TA TA CA TA
169661 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AT CC
-----------------------------------------------------------------------------------------
Total sequence length......................... 235127
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 1 1 0 0 1 3 1 0 2 0 0
15 to 19 1 0 2 0 0 0 2 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 6 1 3 0 0 1 5 1 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
6 AT + 1 TA = 7
3 AG + 0 GA + 2 CT + 0 TC = 5
1 GT + 5 TG + 1 CA + 0 AC = 7
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301790|gb|AE003770.1|AE003770 Drosophila melanogaster genomic scaffold 142000013386035 section 95 of 105, complete sequence
Position Repeat Coverage Repeat
4035 TA * 11 20/22 TA TA TA AA TA CA TA TA TA TA TA
10727 CT * 11 20/22 CT GT CT CT CT CT CT CT CG CT CT
15933 AT * 11 20/22 AT AT AT GT GT AT AT AT AT AT AT
41724 TA * 11 20/22 TA TA TG AA TA TA TA TA TA TA TA
44149 AC * 12 22/24 AC AC CC AC AC AC AA AC AC AC AC AC
46106 TA * 10 18/20 TA TA TA TA CA TA CA TA TA TA
50255 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AT AG
51122 GT * 12 23/24 GT GT GT GT GT GT GT GT GT GT GT GG
62053 AC * 13 24/26 AC AC AC AC AC AC AT AC AC AC AC AC AG
96777 GT * 16 29/32 GT GT GT GT GT GT GT TT GT GT GT GT GT GT TT GC
97793 TA * 11 20/22 TA TA CA TA TA TA CA TA TA TA TA
124161 TG * 11 20/22 TG TG AG TG TG CG TG TG TG TG TG
125834 TG * 11 20/22 TG TG TA TG CG TG TG TG TG TG TG
125865 TG * 11 20/22 TG TG TG TG TG TG TG TA TG TT TG
128494 TG * 12 22/24 TG TG TG TG TG TG TG TG CG AG TG TG
128712 TG * 11 20/22 TG TG AG TG TG TG TG TG TG TG TA
140823 GT * 10 18/20 GT GT GT GT TT GT GT AT GT GT
143227 CA * 11 20/22 CA CA CA CA CA CA CA AA CT CA CA
150303 AC * 12 23/24 AC CC AC AC AC AC AC AC AC AC AC AC
181154 GT * 13 25/26 GT GT GT GT GT GC GT GT GT GT GT GT GT
181397 AG * 10 18/20 AG AG AG AG AG AG AG AG AG GC
182016 GT * 14 26/28 GT GT GT TT GT AT GT GT GT GT GT GT GT GT
191895 TG * 11 20/22 TG TG TG TG TG TG TG TG AT TG TG
192669 TA * 11 20/22 TA TA TA TT TG TA TA TA TA TA TA
196138 AT * 10 18/20 AT AT AT AT AT AA AT AG AT AT
197450 CA * 15 28/30 CA CA CA CA CA CA CA CG CA CA CA CG CA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 224100
Total number of repeats detected.............. 26
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 5 1 0 4 1 6 4 0 1 0 0
15 to 19 0 0 0 0 0 1 0 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 5 1 0 4 2 6 5 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 5 TA = 7
1 AG + 0 GA + 1 CT + 0 TC = 2
5 GT + 6 TG + 2 CA + 4 AC = 17
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301774|gb|AE003769.1|AE003769 Drosophila melanogaster genomic scaffold 142000013386035 section 94 of 105, complete sequence
Position Repeat Coverage Repeat
7093 CA * 18 33/36 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CC AT
49445 CA * 10 18/20 CA CA CA CA CA CA CA CA CT CC
58505 CA * 25 45/50 CA CT CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA TT TG
59216 AC * 11 20/22 AC AC AT GC AC AC AC AC AC AC AC
66699 CA * 15 27/30 CA CA CA CA CA CA CA CA CC CT CA CA CA CA CT
74989 AT * 12 22/24 AT AT AT AT AT AT AT GT AT AT AT AG
75605 AC * 13 24/26 AC AA AC AC AC AC AC AC AC AC AC AC CC
76713 GT * 10 18/20 GT GT GT GT GT GT GT GT GT TG
77540 TA * 10 18/20 TA TA TA TA TT TA TA TT TA TA
77719 AC * 18 33/36 AC TC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC GG
84127 TG * 10 19/20 TG TG TG CG TG TG TG TG TG TG
86677 CA * 11 21/22 CA CA CA CA CA CA CA CA CA CA CT
86839 CA * 13 25/26 CA CA CA CA CA CA CA CA CA CA CA CA TA
86951 AC * 11 20/22 AC AC AC GC AC AC AC TC AC AC AC
88017 CA * 14 26/28 CA CA CA CA CA CA CA CA CA CA CA CA CG AA
95427 CA * 10 18/20 CA CT CG CA CA CA CA CA CA CA
95562 CA * 10 18/20 CA TT CA CA CA CA CA CA CA CA
106521 CT * 11 20/22 CT CG CT CT CT CT CT CT CT CT CC
108192 TG * 10 18/20 TG TG TG TG TG AG TG TG TT TG
112492 TA * 10 18/20 TA TA TA TA TC TA TT TA TA TA
112979 TG * 12 23/24 TG TG TG TG TG TG TG TG TG TG TT TG
113391 AT * 11 20/22 AT AT AT AT AT AT AT AT AT TT AA
117301 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG TG CT
117328 GT * 11 20/22 GT GT TT GT GT GT GT GT GT GG GT
118025 TG * 10 18/20 TG GG TG TG CG TG TG TG TG TG
118800 GA * 11 20/22 GA TA GA GA GA GA GA GA GG GA GA
122040 GT * 10 18/20 GT GT AT GT GT GT AT GT GT GT
124213 CA * 10 18/20 CA CT CA CA CA CA CA CA CT CA
125697 GT * 16 29/32 GT GT GT GT GT GT GT GT GT GT GT GT GG CT CT GT
126113 CA * 13 24/26 CA TA CA CA CA CA CA CA CA CA CA CG CA
130536 CA * 11 20/22 CA AA CG CA CA CA CA CA CA CA CA
132711 TG * 12 22/24 TG TG TG TG TG TG TA TG TG TG TA TG
132883 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CT TA
135138 TG * 11 20/22 TG GG TG TG TG TG TG TG TG TG CG
136116 CA * 10 18/20 CA CA CA CA CA CA CA CT CA CG
137532 GT * 11 20/22 GT GT GT GT GT GT GT GT GC GT GA
145377 CA * 11 20/22 CA TG CA CA CA CA CA CA CA CA CA
150435 TG * 12 22/24 TG TG TG TG TG TG TG TA TT TG TG TG
154427 CA * 17 31/34 CA CA CA CA CA CA CA CA CA CA CA CA CA TG CA CA CC
161844 GT * 12 22/24 GT GT GT GT GT GT GT AT GT GT GT GG
161944 GT * 11 20/22 GT AT GT GT AT GT GT GT GT GT GT
163689 GT * 12 22/24 GT TT GT AT GT GT GT GT GT GT GT GT
170636 AT * 13 24/26 AT AT AT AT GT AT AT AT AT AT AT AT AG
171415 AT * 11 20/22 AT AT AT AT GC AT AT AT AT AT AT
175211 AC * 10 18/20 AC AC AC AC AT GC AC AC AC AC
179869 CA * 20 37/40 CA AA TA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CC
180840 TG * 11 20/22 TG TG CG TG TG TG TG TG TG TG AG
181026 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TG TG TG TG CT GG
182586 CT * 13 24/26 CT CT CT CT CT CT CT CT CT CT CT TT AT
185783 GA * 13 24/26 GA GA AA GA AA GA GA GA GA GA GA GA GA
192365 GT * 11 20/22 GT GT GT GT GT GC GT GT GT GT GG
192731 CA * 12 22/24 CA CA CA CA AC CA CA CA CA CA CA CA
193428 CA * 10 18/20 CA CA CA CA CA CA AA CA CA CC
194145 TG * 15 27/30 TG AG TG TG TG TG TG TG TG TG TG TG TG TG GA
194988 AC * 16 29/32 AC AC AC AC GC AC GC AC AC AC AC AC AC AC AC AA
195342 CA * 10 18/20 CA CA CA AA CA CA CA CA CG CA
195377 AC * 10 18/20 AC AC AC AC AC CC AC AC AC AT
198308 CA * 10 18/20 CA CA CA CA CA TT CA CA CA CA
199934 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CA AG
214911 AT * 11 20/22 AT AC AT AT GT AT AT AT AT AT AT
227698 GT * 11 20/22 GT GT GT GG GT GC GT GT GT GT GT
229881 TA * 10 18/20 TA TG TA TA TA TA TA TA TG TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 234161
Total number of repeats detected.............. 62
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 3 0 2 5 17 9 9 0 2 0 0
15 to 19 0 0 0 0 2 3 2 1 0 0 0 0
20 to 24 0 0 0 0 0 1 0 0 0 0 0 0
25 to 29 0 0 0 0 0 1 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 3 0 2 7 22 11 10 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 3 TA = 8
0 AG + 2 GA + 2 CT + 0 TC = 4
10 GT + 11 TG + 22 CA + 7 AC = 50
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301730|gb|AE003768.1|AE003768 Drosophila melanogaster genomic scaffold 142000013386035 section 93 of 105, complete sequence
Position Repeat Coverage Repeat
7449 TG * 10 18/20 TG CG TG TG TA TG TG TG TG TG
14558 TA * 11 20/22 TA CA TA TA TA TA TA TA TA TA AA
31354 GT * 12 22/24 GT GC GT GT GT GT TT GT GT GT GT GT
36595 CA * 17 31/34 CA CA CA CA CA CA CA CA CA CA CA CA CA AA CA CT CG
44872 TG * 17 31/34 TG TG TG TG TG TG TG TG TG TG TG TG TG CT AG TG TG
56818 CA * 13 24/26 CA CT CA CT CA CA CA CA CA CA CA CA CA
62084 TG * 10 18/20 TG TG TG TG TG TG TG TG TA AG
85577 TA * 10 18/20 TA TA TA TA TA CA TA TA TA TT
89600 CT * 10 18/20 CT CT TT CC CT CT CT CT CT CT
140683 GT * 11 20/22 GT GT AT GT GT GC GT GT GT GT GT
155603 GT * 12 22/24 GT GT GT GT GC GT GT GT GT GT GA GT
158589 AC * 13 24/26 AC AC AC AC AC AC AC CC AC AC AC AC AG
161811 AC * 12 22/24 AC TC AC AC AC AC AC AC AC AC TC AC
173913 GT * 11 20/22 GT GT GA GT GT GT GT GT GT GT TT
174253 CA * 16 29/32 CA CA CA CA CA CA CA CA CA CA CA CG CA AA CC CA
177265 TG * 12 22/24 TG GG TG TG TG TG TG TG TG TG TG TA
189119 GT * 11 20/22 GT GT GT GT AT GT GT GT GT GT GG
224158 GT * 10 18/20 GT GT GT GT GC GT GT GT GA GT
225299 AG * 10 18/20 AG AA AG AG AG AG GG AG AG AG
240628 CA * 18 34/36 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA GG
-----------------------------------------------------------------------------------------
Total sequence length......................... 242815
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 2 1 0 2 1 3 6 0 1 0 0
15 to 19 0 0 0 0 0 3 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 2 1 0 2 4 4 6 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 2 TA = 2
1 AG + 0 GA + 1 CT + 0 TC = 2
6 GT + 4 TG + 4 CA + 2 AC = 16
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301701|gb|AE003767.1|AE003767 Drosophila melanogaster genomic scaffold 142000013386035 section 92 of 105, complete sequence
Position Repeat Coverage Repeat
36637 CA * 10 18/20 CA CA CA CA TA GA CA CA CA CA
40983 CA * 10 19/20 CA CA CA CA CA CA CA CA CA CG
53840 TC * 21 38/42 TC CC TC TC TC TC TC TC TC TC TC TC TC TC TC TC CC TA TC GC TC
96068 TG * 10 19/20 TG TG TG TG TG TG CG TG TG TG
111090 TA * 11 20/22 TA TT TA TA TA AA TA TA TA TA TA
124271 GT * 10 18/20 GT GT GC GT GT GT GT GT GT TT
124307 TG * 11 20/22 TG AG TG TG TG TG TG TG TG TG TT
129421 GT * 13 24/26 GT GT GA GC GT GT GT GT GT GT GT GT GT
129997 TG * 11 20/22 TG TA TG TG TG TG TG TG TG TT TG
130126 AC * 10 18/20 AC AC TC AC AC AA AC AC AC AC
132721 GT * 10 18/20 GT GT GT GT GT GT TT AT GT GT
132930 CA * 13 24/26 CA CA CC CA CA CA CA CA CA CA CA CT CA
134693 GT * 15 28/30 GT GT GT GT GT GT GT GT GT GT GT GT GT GC TT
137397 TG * 17 31/34 TG TA CG TG TG TG TG TG TG TG TG TG TG TG TG TG GG
137827 GT * 16 29/32 GT GT GT GC GT AT GT GT GT GT GT GT GT GT GT GC
138907 GT * 11 20/22 GT TT GT TT GT GT GT GT GT GT GT
141396 AC * 10 19/20 AC AC AC GC AC AC AC AC AC AC
141786 CA * 11 20/22 CA CA CA CA CA CA CA CA CG CA CT
142131 AC * 11 20/22 AC AC AC AC AC AC AC AT TC AC AC
144951 TG * 12 22/24 TG TG CG TT TG TG TG TG TG TG TG TG
153672 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG TT GG
160023 GT * 12 23/24 GT GT GT GT GT GT GT GT GT GT GT GA
162429 CA * 10 18/20 CA CA CA CA CA GA CA CA CA GA
162997 TG * 18 33/36 TG TC TG GG TG TG TG TG TG TG TG TG TG TG TG GG TG TG
169736 AT * 22 40/44 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT GT GT GT
171380 TG * 11 20/22 TG TG TG TG TG TG TG TG TA AG TG
174898 TG * 11 20/22 TG AG TG TG TG TG TG TG TG TG TT
179434 TA * 10 18/20 TA TA TA GA TG TA TA TA TA TA
180342 CA * 10 18/20 CA CA GA CA CA CA CA CG CA CA
180858 GT * 10 18/20 GT GT GT GT GT GT GT GC TT GT
181045 TG * 13 25/26 TG TG TG TG TG TG TG TG TG TG TG TG TA
181984 CA * 11 20/22 CA CT GA CA CA CA CA CA CA CA CA
183381 TG * 10 18/20 TG TG TG TG TG TG TG AG TT TG
188160 CA * 12 22/24 CA CA CA AA CA CA CA CA CG CA CA CA
188187 AC * 10 18/20 AC AC AT AC AT AC AC AC AC AC
197167 TC * 10 18/20 TC TC CC TC TC TC CC TC TC TC
201011 AT * 10 18/20 AT AT AC AT AT AC AT AT AT AT
201514 GT * 11 20/22 GT GT GT GT GT AT GT AT GT GT GT
201729 GT * 11 20/22 GT GT GT GC GT TT GT GT GT GT GT
206761 GT * 17 31/34 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT TG GC
206858 AT * 10 18/20 AT AT AT AT AT AC GT AT AT AT
209093 CA * 13 25/26 CA CA AA CA CA CA CA CA CA CA CA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 225155
Total number of repeats detected.............. 42
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 2 0 0 4 9 9 8 1 0 0 0
15 to 19 0 0 0 0 0 0 2 3 0 0 0 0
20 to 24 1 0 0 0 0 0 0 0 1 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 2 0 0 4 9 11 11 2 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 2 TA = 5
0 AG + 0 GA + 0 CT + 2 TC = 2
11 GT + 11 TG + 9 CA + 4 AC = 35
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301683|gb|AE003766.1|AE003766 Drosophila melanogaster genomic scaffold 142000013386035 section 91 of 105, complete sequence
Position Repeat Coverage Repeat
2190 AC * 15 28/30 AC AC AC AC AC AC AC AC AC AC AC AC AC AT TC
6802 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GA GT GA
12205 GT * 12 22/24 GT AT GT GT GT GT GT GT GT GG GT GT
17440 TG * 10 18/20 TG TG TG TG TG TG TC CG TG TG
58494 CA * 11 20/22 CA CC CA CA CA CA CA CA CA CA GA
76421 CT * 13 24/26 CT CT CA TT CT CT CT CT CT CT CT CT CT
90101 AT * 10 19/20 AT AT AT AT AT AT AT AT GT AT
122905 TA * 11 20/22 TA TA TA TG TA TA TA TA TA TC TA
134490 GT * 10 18/20 GT GT GT GT GT GT GT GC GG GT
136361 AC * 11 20/22 AC GC AC AC AC AC AC AC AC AT AC
191948 CA * 13 24/26 CA AA CA CA CA CA CA CA CA CA CA CA TA
196660 TG * 13 24/26 TG CG CG TG TG TG TG TG TG TG TG TG TG
221113 CA * 11 20/22 CA CA TA CA CA CA CA CA CA CA CT
-----------------------------------------------------------------------------------------
Total sequence length......................... 225894
Total number of repeats detected.............. 13
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 1 0 0 1 3 2 3 0 1 0 0
15 to 19 0 0 0 0 1 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 1 0 0 2 3 2 3 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 1 TA = 2
0 AG + 0 GA + 1 CT + 0 TC = 1
3 GT + 2 TG + 3 CA + 2 AC = 10
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301668|gb|AE003765.1|AE003765 Drosophila melanogaster genomic scaffold 142000013386035 section 90 of 105, complete sequence
Position Repeat Coverage Repeat
3070 CA * 11 20/22 CA CA CA CA CA CA CG CA CG CA CA
6155 GT * 11 20/22 GT GT GT GT GT GC GT GC GT GT GT
11857 TC * 10 18/20 TC TC AA TC TC TC TC TC TC TC
24968 GT * 18 33/36 GT GA GT GT GT GT GT GT TT GT GT GT GT GT GT GT GT GG
38669 AC * 16 29/32 AC AC AC AC AC AC AC AC AC AC AT AC AC AT AC AG
47545 TG * 12 22/24 TG CG TG AG TG TG TG TG TG TG TG TG
47593 GT * 11 20/22 GT GT GT GT GA GT GT GT GT GT GA
48828 CA * 11 20/22 CA CA CA CA CA CA CA CA CA TA GA
56618 CA * 10 18/20 CA CA CA CA CA CA CA CA CA GC
58531 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TG TG TG AG TG CA
61497 GT * 10 18/20 GT AT AT GT GT GT GT GT GT GT
62818 GT * 10 18/20 GT GT TT GT GT GT GT GT GG GT
67508 GA * 11 20/22 GA GA TA GA GA AA GA GA GA GA GA
67531 AG * 15 28/30 AG AG AG AG AG AA AG AG AG AG AG AG AG AG AA
72500 CA * 10 18/20 CA CA CA CT TA CA CA CA CA CA
72641 AC * 15 27/30 AC AC AC AC AC AC AC AC AC AC AA AC AC AC GG
76508 TA * 12 23/24 TA TA TA TA TA TA TA CA TA TA TA TA
79359 TG * 13 24/26 TG TG TG TG TA TG TG TG TG TG AG TG TG
80464 AC * 16 29/32 AC CC GC AC AC AC AC AC AC AC AC AC AC AC AC AG
81666 TG * 13 24/26 TG TG TG TG TG TG TG TG TG GG TG TG GG
87441 TC * 11 20/22 TC TC TC TC TC TA GC TC TC TC TC
87970 AG * 10 18/20 AG CG AG AG AG AG AG AG AG AC
90286 CA * 15 27/30 CA CA CC CA AA CA CA CA CA CA CA CA CA CA CG
95186 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG AA
97077 GT * 10 18/20 GT GT GT GT GT GT GT GT GT TA
116084 AC * 11 20/22 AC AC AC AC AC AC AC GC AC AC AA
118010 CA * 10 18/20 CA CA CA CA CA CT CA CA CA GA
119981 TG * 10 18/20 TG TG CA TG TG TG TG TG TG TG
138098 AC * 10 19/20 AC AC AC AC AC AC AC AC AC TC
139410 GT * 11 20/22 GT GA GT GT GA GT GT GT GT GT GT
145113 AC * 13 24/26 AC AC AC AC AC AC AC AC AT AC AC AC AA
149768 AC * 10 18/20 AC AC AG AC AC AC AC AC AC AG
153907 CA * 12 22/24 CA CA CA CA CA CA GA CA CA CG CA CA
215975 CA * 11 21/22 CA CA CA CA CA CA CA CG CA CA CA
217519 CA * 19 35/38 CA CA CA CA CA CA CA CA CA CA CA CA CA CA TA CA CA CT CT
222262 GT * 10 18/20 GT GT GT GT GT GT GT GC GA GT
222408 GT * 11 20/22 GT TA GT GT GT GT GT GT GT GT GT
229547 AC * 11 20/22 AC AC AC AC CC AC AC AC AC AC GC
230131 CA * 10 18/20 CA CA CA CA CT CA CA CA CA CC
230758 GT * 10 18/20 GT GT GT GT GT GT GT GT GT AC
231696 CA * 10 18/20 CA CA CA CA TA CA CA CA CA CT
237406 CA * 11 20/22 CA CT CA CA CA CA CA CA TA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 239098
Total number of repeats detected.............. 42
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 1 1 1 5 10 5 9 2 0 0 0
15 to 19 0 0 1 0 3 2 1 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 1 2 1 8 12 6 10 2 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 1 TA = 1
2 AG + 1 GA + 0 CT + 2 TC = 5
10 GT + 6 TG + 12 CA + 8 AC = 36
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301658|gb|AE003764.1|AE003764 Drosophila melanogaster genomic scaffold 142000013386035 section 89 of 105, complete sequence
Position Repeat Coverage Repeat
7161 TG * 10 18/20 TG TG TG TG TG TG TG CA TG TG
18860 GT * 16 30/32 GT GT GT CT CT GT GT GT GT GT GT GT GT GT GT GT
19391 TG * 16 29/32 TG TG TG TG TG TG TG TG TG TG CG TG TG CG TG CG
20040 GT * 10 18/20 GT GT GT AT GT GT AT GT GT GT
27442 AC * 10 18/20 AC AG GC AC AC AC AC AC AC AC
49070 AT * 12 22/24 AT AT AT AT AT AT AT AC AT AT AT GT
57092 AG * 10 18/20 AG AG AG AG AG AG AG AG AG TT
58678 GT * 10 18/20 GT GT GC GT GT GT GT TT GT GT
64623 AC * 10 18/20 AC AC AC AC AC AC AC AC AC GA
69075 AC * 10 18/20 AC AC AC AA AC AC AC AC GC AC
98413 TG * 10 19/20 TG TT TG TG TG TG TG TG TG TG
104375 TA * 11 20/22 TA TA TA TA TA TT TG TA TA TA TA
111052 CA * 10 18/20 CA CA CA CA CA CA AA TA CA CA
120673 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CT CA CG
127476 CA * 11 20/22 CA CA CA CT CG CA CA CA CA CA CA
130041 CA * 10 18/20 CA CA CA CA CA CG CG CA CA CA
134259 GT * 13 24/26 GT TT TT GT GT GT GT GT GT GT GT GT GT
134870 CA * 11 20/22 CA CA CA CA CG CA CA CA CA TA CA
140250 AT * 10 18/20 AT AT AT AT AT AT AT GT AG AT
140958 AT * 15 28/30 AT AT AT AT AT AT AC AT AT AT AT AT AT AT AC
141766 CA * 12 22/24 CA CA CA CA CA CC CA CA CA CA CA CT
143465 CA * 12 23/24 CA CA CA CA CA CA CA CA CA CA CA TA
148271 AC * 10 18/20 AC AC AC AT GC AC AC AC AC AC
152629 AC * 10 18/20 AC AC AC AT GC AC AC AC AC AC
169565 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA CA TG
171952 AC * 11 20/22 AC CC AC AA AC AC AC AC AC AC AC
175654 CA * 10 18/20 CA CA CA CA CA CA CA CA CC TA
199083 AC * 11 20/22 AC CC AC AC AC AC AC AC AC AC AA
216227 GT * 13 24/26 GT AT TT GT GT GT GT GT GT GT GT GT GT
220016 AT * 15 28/30 AT AT AT AT TT AT AT AT AT AT AT GT AT AT AT
221894 GT * 10 18/20 GT AT GT GT GT GT GT GT GT TT
226802 AT * 11 20/22 AT AT AT AT AT AT AA AT AT AT AG
-----------------------------------------------------------------------------------------
Total sequence length......................... 231691
Total number of repeats detected.............. 32
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 1 1 0 7 9 2 5 0 0 0 0
15 to 19 2 0 0 0 0 0 1 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 1 1 0 7 9 3 6 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 1 TA = 6
1 AG + 0 GA + 0 CT + 0 TC = 1
6 GT + 3 TG + 9 CA + 7 AC = 25
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301637|gb|AE003763.1|AE003763 Drosophila melanogaster genomic scaffold 142000013386035 section 88 of 105, complete sequence
Position Repeat Coverage Repeat
358 TG * 11 20/22 TG TG CG TG CG TG TG TG TG TG TG
664 AC * 13 24/26 AC GC AC AC AC AC AC AC AC GC AC AC AC
1904 AT * 11 20/22 AT AT AT GT AT AT AT AT AT AT AG
4280 AC * 12 22/24 AC AC AC AC AT AC AA AC AC AC AC AC
8957 TG * 16 29/32 TG TG TG TG TA CG TG TG TG TG TG TG TG TG TG GG
10785 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GT AT GT AT
17193 CA * 12 22/24 CA CA CA CA CA CA CA CA CA AA CA CG
17453 TG * 13 24/26 TG CG CG TG TG TG TG TG TG TG TG TG TG
19279 TG * 11 21/22 TG TG TG TG TG TG TG TG TG TC TG
51160 GT * 13 24/26 GT GT GT GT GT GT GT GT GT TT GC GT GT
53576 AT * 11 20/22 AT AC AT AT AT AT AT AT AT GT AT
76076 TG * 10 18/20 TG TG GG TT TG TG TG TG TG TG
76730 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG CC
79913 AT * 13 24/26 AT AT AT AT AT AT AT AT AT AT AT GT GT
86056 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CT CA TA
89670 GT * 11 20/22 GT GT GT TG GT GT GT GT GT GT GT
92830 AG * 12 23/24 AG AG AG AG AG AG AG AG AG AG AA AG
97206 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT GT AG
97414 TG * 10 18/20 TG TG TA TG TG TT TG TG TG TG
100883 CA * 12 22/24 CA CA CT AA CA CA CA CA CA CA CA CA
102688 GT * 11 20/22 GT GC GT AT GT GT GT GT GT GT GT
103095 AC * 11 21/22 AC AC AC AC AC AC AC AC AC AC AA
103417 GT * 12 22/24 GT GA GT GC GT GT GT GT GT GT GT GT
103740 TG * 11 20/22 TG TG TA TG TG TG TG TG TG TG TA
109564 TC * 10 18/20 TC TA TC TC TC TC TC TC TT TC
109584 TG * 11 20/22 TG TG TT TG TG TG TG TG TG TG CG
112949 CA * 10 18/20 CA CA CA CA TA GA CA CA CA CA
116204 TG * 11 21/22 TG TA TG TG TG TG TG TG TG TG TG
120992 GT * 11 20/22 GT AT GT TT GT GT GT GT GT GT GT
131062 CT * 10 18/20 CT CT CT CT CT CT CT CC TT CT
131272 TG * 10 19/20 TG TG TG TG TG TG TG CG TG TG
131393 GT * 12 23/24 GT GT GT GT GT GT GT GT GT GT GT GA
132760 GT * 10 18/20 GT CT GT TT GT GT GT GT GT GT
132894 GT * 12 22/24 GT TT GT GT GT GT GT GC GT GT GT GT
140603 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG TG CC
146143 CA * 16 30/32 CA AG CA CA CA CA CA CA CA CA CA CA CA CA CA CA
147979 TG * 12 22/24 TG TG TG CT TG TG TG TG TG TG TG TG
148007 TG * 12 22/24 TG TC TC TG TG TG TG TG TG TG TG TG
150698 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT GA GC
157916 TG * 10 18/20 TG TT TA TG TG TG TG TG TG TG
159050 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA CC AA
162136 AT * 11 20/22 AT AT AT AT AT AT AT AT AT TT TT
166246 CA * 11 20/22 CA CC CA CA CT CA CA CA CA CA CA
182102 TA * 10 18/20 TA TA TA TA TA TA TA TA TT TT
190575 AT * 12 22/24 AT AT AT AT AT CT TT AT AT AT AT AT
192005 AG * 12 22/24 AG AA AG CG AG AG AG AG AG AG AG AG
193700 TA * 10 18/20 TA TA TA TA TA TA TA TA TG AA
194754 AT * 16 29/32 AT AT AT AT AT AT AT AT AC AT AT AT AT AT AC AG
196607 TG * 11 20/22 TG CG TG TG TG TG TG TG TG TG AG
202607 GT * 11 20/22 GT AT GA GT GT GT GT GT GT GT GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 203557
Total number of repeats detected.............. 50
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 2 2 0 3 6 15 12 1 1 0 0
15 to 19 1 0 0 0 0 1 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 6 2 2 0 3 7 16 12 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
6 AT + 2 TA = 8
2 AG + 0 GA + 1 CT + 1 TC = 4
12 GT + 16 TG + 7 CA + 3 AC = 38
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301615|gb|AE003762.1|AE003762 Drosophila melanogaster genomic scaffold 142000013386035 section 87 of 105, complete sequence
Position Repeat Coverage Repeat
7339 TA * 11 20/22 TA TA TA TA TA TA TA TG TA TG TA
52401 AT * 10 18/20 AT AT AT AT AT GT AC AT AT AT
56230 TG * 10 18/20 TG TG TG TG TA TT TG TG TG TG
63502 CA * 12 22/24 CA CA CA CA CA TA CA CA CA TA CA CA
71469 TG * 10 18/20 TG CG TG TG TT TG TG TG TG TG
73107 TG * 10 18/20 TG TG TA TG TG TG TG TG AG TG
75653 GA * 12 22/24 GA AA GA GA AA GA GA GA GA GA GA GA
92835 TG * 11 20/22 TG TG TG TG TG CG AG TG TG TG TG
96850 TG * 10 18/20 TG CG TG TG TG TG TG AG TG TG
102443 AT * 10 18/20 AT AA AT AT AT AT AT AT AT TT
105886 CA * 10 18/20 CA CA CA CA CA CA CA CA CC CC
107994 AT * 13 24/26 AT TT CT AT AT AT AT AT AT AT AT AT AT
109746 AG * 12 22/24 AG AC AG AG AG AG AG AG AG AG AG GG
113495 AC * 12 22/24 AC AC AC AC AC AC AC GC AC AC AA AC
130340 CA * 17 31/34 CA TT CA CA CA CA CA CA CA CA CA CA CA CA CA CA CG
133406 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AC TT
135556 TC * 13 24/26 TC GC TT TC TC TC TC TC TC TC TC TC TC
136441 CA * 10 18/20 CA AA CA CA CA CA CA CA CT CA
148423 TG * 10 18/20 TG TG TA TA TG TG TG TG TG TG
151319 GT * 10 18/20 GT GT GT GT GT GT GT CC GT GT
151539 AC * 11 20/22 AC CA AC AC AC AC AC AC AC AC AC
154291 TG * 15 28/30 TG TG TG TG TG TG TG TG TG TG TG TG TG TC TC
164381 CA * 12 22/24 CA CA CA CA CT CA AA CA CA CA CA CA
165859 AT * 11 20/22 AT AT AC AT AT AT CT AT AT AT AT
170190 CA * 11 20/22 CA CA CA CG CA CA CA TA CA CA CA
173398 AT * 12 22/24 AT AT AT AT AT AT AT AT AT AT TT AA
173964 GT * 11 20/22 GT GT GT GT GT GT GT GT GA AT GT
178009 TG * 15 28/30 TG TG TG CT TG TG TG TG TG TG TG TG TG TG TG
179954 GT * 12 22/24 GT GT GC GT GC GT GT GT GT GT GT GT
188472 AT * 12 22/24 AT AT AT AT AC AT AT GT AT AT AT AT
191828 CA * 11 20/22 CA CA CA CA CA CA CA CC CA CA TA
192979 AT * 10 18/20 AT AT AT AT AT AT AT TT AG AT
194401 AC * 10 18/20 AC GT AC AC AC AC AC AC AC AC
195250 AC * 15 27/30 AC AC TC AC AC AC AC AC AC AC AC AC AC AA AG
198162 TG * 12 22/24 TG AG TG TG TG TC TG TG TG TG TG TG
212457 TG * 11 20/22 TG GA TG TG TG TG TG TG TG TG TG
213660 CA * 13 24/26 CA AA CA CA CA CA CA CA CA CA CA CA CG
-----------------------------------------------------------------------------------------
Total sequence length......................... 230995
Total number of repeats detected.............. 37
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 7 1 1 1 4 7 8 3 1 0 0 0
15 to 19 0 0 0 0 1 1 2 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 7 1 1 1 5 8 10 3 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
7 AT + 1 TA = 8
1 AG + 1 GA + 0 CT + 1 TC = 3
3 GT + 10 TG + 8 CA + 5 AC = 26
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301591|gb|AE003761.1|AE003761 Drosophila melanogaster genomic scaffold 142000013386035 section 86 of 105, complete sequence
Position Repeat Coverage Repeat
390 CA * 10 18/20 CA CT CT CA CA CA CA CA CA CA
3671 TG * 12 22/24 TG TG TG TG TG TG TA TG TG TA TG TG
5266 GA * 11 20/22 GA GC GA GG GA GA GA GA GA GA GA
6279 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG CT
7270 TG * 15 27/30 TG TG TG TG CG TG TG TG TG TG TG TA TG TG TT
8697 TG * 12 22/24 TG TG TG TG CG TG TG TG TG TG TG CG
19406 TA * 11 20/22 TA TA TA TA TA TA TA TA TA TG TC
31858 AT * 10 18/20 AT AC AT AT AT AT AT AT AT AG
38884 CT * 10 18/20 CT CT GC CT CT CT CT CT CT CT
41817 AC * 10 18/20 AC AC CC AC AC AC GC AC AC AC
45509 TG * 10 18/20 TG TG TG TC TG TG TG TA TG TG
51666 TG * 11 20/22 TG TG TG TG TG TG TG TG TG CA TG
55356 TG * 13 24/26 TG TG TG CG TG TG TG TG TG TC TG TG TG
55781 AC * 12 22/24 AC AC AC AC AC AC GC AC AC GC AC AC
63019 CA * 10 19/20 CA CA CA CA CA CA CA CA CT CA
63870 CA * 13 25/26 CA CA CA CC CA CA CA CA CA CA CA CA CA
68541 CA * 16 29/32 CA CA CA CA CA CA CA CA CA CA CA CA TA CA CA TT
82239 AG * 10 18/20 AG AG TG AG AG AG AG AG AG CG
97707 AC * 10 18/20 AC AC AC AC AA AC GC AC AC AC
104211 GT * 16 29/32 GT AA GT GT GT GT GT GT GT GT GT GT GT GT GA GT
125524 TA * 12 22/24 TA TA TA TA CC TA TA TA TA TA TA TA
125622 GT * 11 20/22 GT GT GT GT GT GT GT GA GT GA GT
135688 CA * 15 28/30 CA CA CA CA CA CA CA CA CA CA CA CA CA CA TG
144334 AC * 11 20/22 AC AC AC AC AC AG GC AC AC AC AC
144469 TG * 11 20/22 TG TG TG TG CG TG TG TG TG TG CG
170735 AC * 13 24/26 AC GC AC AC AC AC AC AC AC GC AC AC AC
173135 GT * 10 18/20 GT GT GT GT GT AT CT GT GT GT
178217 AT * 11 20/22 AT AG AT AT AT AT GT AT AT AT AT
182179 CA * 10 18/20 CA CA CA CA CA CA CA CA GA GA
189896 TA * 11 20/22 TA TA TA TA TA TA TA TA TG TA TG
191512 GT * 10 18/20 GT GA GC GT GT GT GT GT GT GT
204533 TA * 16 29/32 TA TT TA TA TA TG TA TA TA TA TA TA TA TA TA GA
218126 AG * 10 18/20 AG AC CG AG AG AG AG AG AG AG
220071 TG * 10 18/20 TG TG TG TG TG TG TG TG TA TC
-----------------------------------------------------------------------------------------
Total sequence length......................... 224614
Total number of repeats detected.............. 34
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 3 2 1 5 4 8 3 0 1 0 0
15 to 19 0 1 0 0 0 2 1 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0