Di-Nucleotide Repeats in Genomic Sequences
Di-Nucleotide Repeats in
Drosophila melanogaster Chromosome-Arm-3R Genomic Scaffolds
Genomic Sequence:..
gi|7316099|gb|AE002681.1|AE002681 Drosophila melanogaster genomic scaffold 142000013386043, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7296880|gb|AE003607.1|AE003607 Drosophila melanogaster genomic scaffold 142000013386043 section 8 of 8, complete sequence
Position Repeat Coverage Repeat
10064 TA * 16 29/32 TA TA TA TA TA TA TA AA TA TA TA TA TA TG CA TA
25051 TA * 11 20/22 TA TA TA TA TA TA TA TG TA CA TA
41801 AT * 10 18/20 AT AT AT AT AT AT GT AG AT AT
50887 AT * 11 20/22 AT AT AT AA AT AT AT TT AT AT AT
50920 AT * 26 48/52 AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT CC
-----------------------------------------------------------------------------------------
Total sequence length......................... 95401
Total number of repeats detected.............. 5
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 1 0 0 0 0 0 0 0 0 0 0
15 to 19 0 1 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 1 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 2 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 2 TA = 5
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 0 TG + 0 CA + 0 AC = 0
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7296839|gb|AE003606.1|AE003606 Drosophila melanogaster genomic scaffold 142000013386043 section 7 of 8, complete sequence
Position Repeat Coverage Repeat
25226 TA * 10 18/20 TA TG TA TA TA TA TG TA TA TA
29911 TA * 10 18/20 TA GA AA TA TA TA TA TA TA TA
37969 TA * 15 28/30 TA TA TA TA TA TA TA TA TA TA TT TA CA TA TA
70930 AT * 10 18/20 AT AA AA AT AT AT AT AT AT AT
96014 TC * 13 24/26 TC TT TC TC TC TC TC TC TC TC TA TC TC
107740 TA * 11 20/22 TA TA TA TA TA TA TA TA TG CA TA
174069 TG * 10 18/20 TG TG TG TG TG TA CG TG TG TG
194650 AT * 10 18/20 AT AT AT AT AT AA AT AC AT AT
222475 TG * 10 18/20 TG TG TG TG CG CG TG TG TG TG
267951 AT * 10 18/20 AT AT AT AT AA AT AT AC AT AT
267972 TA * 18 33/36 TA TA TA TG TA TA TG TA TA TA TA TA TA TA CA TA TA TA
268009 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
268033 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
268056 TA * 12 22/24 TA TA TA TA CA TG TA TA TA TA TA TA
269519 AG * 11 20/22 AG AG AA AG AG AG AG AG AG AG AC
269560 AT * 10 18/20 AT AT AT AT AT AT AT AT AG AA
287727 TC * 10 18/20 TC TC TA TC TC TC TG TC TC TC
-----------------------------------------------------------------------------------------
Total sequence length......................... 300275
Total number of repeats detected.............. 17
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 6 4 1 0 0 0 2 0 2 0 0 0
15 to 19 0 2 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 6 6 1 0 0 0 2 0 2 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
6 AT + 6 TA = 12
1 AG + 0 GA + 0 CT + 2 TC = 3
0 GT + 2 TG + 0 CA + 0 AC = 2
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7296808|gb|AE003605.1|AE003605 Drosophila melanogaster genomic scaffold 142000013386043 section 6 of 8, complete sequence
Position Repeat Coverage Repeat
14369 GT * 12 22/24 GT GT GA GT GT GT GT GT GT GT GT GA
20852 GT * 10 18/20 GT GT GT GT GT GT GT GT GC GA
38702 TC * 10 18/20 TC TC TC GC TC TC TA TC TC TC
39833 GT * 57 103/114 GT GT GC GT GT GT GT GT GC GT GT GT GT GT GT GT GT GT GT GT GC GT GT GC GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT TT GT GG TC TA TT
44269 CT * 23 42/46 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT TC CC CT CC CT CT
55279 TA * 32 58/64 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA AA CT GT
55532 AT * 11 20/22 AT AT AT AT AT AT AT AT AA AT AA
183532 CA * 10 18/20 CA CA TA CA CA CA CA AA CA CA
271825 AT * 10 18/20 AT AT AC AT AT AT AT GT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 274591
Total number of repeats detected.............. 9
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 0 0 0 0 1 0 2 1 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 1 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 1 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 1 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 1 0 0 0 1 0 3 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 1 TA = 3
0 AG + 0 GA + 1 CT + 1 TC = 2
3 GT + 0 TG + 1 CA + 0 AC = 4
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7296793|gb|AE003604.1|AE003604 Drosophila melanogaster genomic scaffold 142000013386043 section 5 of 8, complete sequence
Position Repeat Coverage Repeat
5154 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GT GG GT GC
11398 GT * 11 20/22 GT GT GC GT GG GT GT GT GT GT GT
36092 AT * 10 19/20 AT AT AT GT AT AT AT AT AT AT
57662 TC * 11 20/22 TC TC AC TC TC TC TC GC TC TC TC
124300 TG * 11 20/22 TG TG TG GG TG TG GG TG TG TG TG
125164 TG * 19 35/38 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TT GG TC
134245 TA * 11 20/22 TA TT TA TA TA TA TG TA TA TA TA
141971 TA * 10 19/20 TA TA TA TA TA TA TA TA TT TA
168009 AG * 10 18/20 AG AG AG AG AG AG AG AG GG GG
179027 AT * 10 18/20 AT AC AT AT AT AT CT AT AT AT
179048 TA * 10 18/20 TA TA TA GA TA TG TA TA TA TA
188856 CT * 16 29/32 CT CT CT CT CT CT CT CT CT CC CT CT CG CT CT CA
276766 CA * 27 49/54 CA CA CA CA AA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA AT TC
279354 GT * 11 20/22 GT GT AT GT GT TT GT GT GT GT GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 302700
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 3 1 0 0 0 1 3 1 0 0 0
15 to 19 0 0 0 0 0 0 1 0 0 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 1 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 3 1 0 0 1 2 3 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 3 TA = 5
1 AG + 0 GA + 1 CT + 1 TC = 3
3 GT + 2 TG + 1 CA + 0 AC = 6
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7296751|gb|AE003603.1|AE003603 Drosophila melanogaster genomic scaffold 142000013386043 section 4 of 8, complete sequence
Position Repeat Coverage Repeat
18187 AC * 10 18/20 AC CC AC AC AC AC AC AC AT AC
20442 TG * 12 22/24 TG TG TG TG CG TG TG TG TG TG GG TG
25626 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AC TC GC
26343 GA * 12 22/24 GA GA GC GA GA GA GA GA GA GA GA GC
27884 CA * 12 22/24 CA CA CG CA CA CA CA CA CA CA CA TA
28276 TG * 14 26/28 TG TG TG CG TG TG TG TG TG TG TG TG TG TC
47818 TG * 10 18/20 TG CG TG TG TG TC TG TG TG TG
90877 TG * 10 19/20 TG TG TG TG TG TG TG TG TG CG
132316 TA * 11 20/22 TA TA TA TA TA TA TA TA TA TA AT
157486 AG * 13 24/26 AG CG AA AG AG AG AG AG AG AG AG AG AG
157513 GA * 17 31/34 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GG CG
164902 AT * 13 24/26 AT AT AT AT AA AT AT AC AT AT AT AT AT
167799 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC AG AT AC
183831 AT * 10 18/20 AT AC AT TT AT AT AT AT AT AT
197277 CA * 15 28/30 CA GA CA CA CA CA CA CA CA CT CA CA CA CA CA
208809 TG * 10 18/20 TG AG TG TG CG TG TG TG TG TG
248003 TG * 14 26/28 TG TG TG TG TG TG AG TG TG TG TG TG TG CG
251864 TA * 31 56/62 TA TA TA TA TA GA TA TA TA TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT GA AA TC
267348 TA * 10 18/20 TA TA TA TA TA TA TA TA TA CT
284432 TG * 16 29/32 TG AG TG TG TG TG TG TG TG TG TG CG TG TG AG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 294507
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 2 1 1 3 1 6 0 0 0 0 0
15 to 19 0 0 0 1 0 1 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 1 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 3 1 2 3 2 7 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 3 TA = 5
1 AG + 2 GA + 0 CT + 0 TC = 3
0 GT + 7 TG + 2 CA + 3 AC = 12
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7296683|gb|AE003602.1|AE003602 Drosophila melanogaster genomic scaffold 142000013386043 section 3 of 8, complete sequence
Position Repeat Coverage Repeat
5619 TA * 10 18/20 TA TT TA TA TA CA TA TA TA TA
37192 AG * 20 37/40 AG AG CG AA AG AG AG AG AG AG AG AG AG AG AG AG AG AG AA AG
37234 AG * 21 38/42 AG CG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG TG TC
59036 GT * 10 18/20 GT CT CT GT GT GT GT GT GT GT
77554 CA * 10 18/20 CA CA CA AA CA CA CA CA CA GA
90164 GT * 12 22/24 GT GT AT GT GT GT GT GT GT GC GT GT
99615 TA * 10 18/20 TA TA TA CC TA TA TA TA TA TA
125594 AC * 11 20/22 AC AG AC AC AC AC AC AA AC AC AC
125888 CT * 12 22/24 CT CT CT CT CT CT CT CT CG CT CG CT
131231 AT * 10 18/20 AT AT AT AT AC AT AC AT AT AT
138302 AC * 10 18/20 AC AG GC AC AC AC AC AC AC AC
187126 TA * 13 25/26 TA TG TA TA TA TA TA TA TA TA TA TA TA
190947 GT * 10 18/20 GT GC GA GT GT GT GT GT GT GT
215481 TG * 10 18/20 TG TG TG TG TG TG TG CG AG TG
219590 TC * 10 18/20 TC TC TC TT TC TC TC TC TC CC
221074 CA * 10 18/20 CA CG CA CA CA CA CC CA CA CA
227261 TC * 10 18/20 TC TC TC TT GC TC TC TC TC TC
229432 TA * 10 18/20 TA TA TA TA TA CA TA TA CA TA
229917 TC * 11 20/22 TC GC TC TC TC TC TC TC TC TA TC
236557 AT * 10 18/20 AT AT AT AT AT AT AT AT AT TC
-----------------------------------------------------------------------------------------
Total sequence length......................... 297266
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 4 0 0 2 2 1 3 3 1 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 2 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 4 2 0 2 2 1 3 3 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 4 TA = 6
2 AG + 0 GA + 1 CT + 3 TC = 6
3 GT + 1 TG + 2 CA + 2 AC = 8
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7296642|gb|AE003601.1|AE003601 Drosophila melanogaster genomic scaffold 142000013386043 section 2 of 8, complete sequence
Position Repeat Coverage Repeat
3596 AG * 10 18/20 AG AG AC AG GG AG AG AG AG AG
7310 AC * 10 18/20 AC GC AG AC AC AC AC AC AC AC
38683 CT * 10 19/20 CT CT CT CT CT CT CT CT TT CT
61483 GT * 10 18/20 GT GC GA GT GT GT GT GT GT GT
66960 GT * 12 22/24 GT GT GT GC GT GT GC GT GT GT GT GT
132659 CA * 10 18/20 CA CA CA CA CA CA GA CA CA CC
133393 CA * 11 20/22 CA CA CA CA CA CT CG CA CA CA CA
143729 CA * 10 18/20 CA CA CA CA CA AA CA CA CA AA
159267 CA * 16 30/32 CA CA CA AA CA CA CA CA CA CA CA CA CA CA CA CG
178213 CA * 13 24/26 CA CG CA CA CA CA CA CA CA CA TA CA CA
225331 AT * 15 27/30 AT AC AT AT AT AT AT AT AT GT AT AT AT AT AG
226143 AT * 16 29/32 AT AT AT AT AT AT AT AA AT AA AT AT AT AT AT TT
238906 CA * 10 18/20 CA CA CA CA CG CA CA CA CA CT
254486 TA * 10 18/20 TA AA TA TA TA TA TA TA TA TT
296148 AT * 10 18/20 AT AT AT AT AG GT AT AT AT AT
297588 AT * 10 18/20 AT TT AT AT AC AT AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 303626
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 1 1 0 1 5 0 2 0 1 0 0
15 to 19 2 0 0 0 0 1 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 1 1 0 1 6 0 2 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 1 TA = 5
1 AG + 0 GA + 1 CT + 0 TC = 2
2 GT + 0 TG + 6 CA + 1 AC = 9
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7296607|gb|AE003600.1|AE003600 Drosophila melanogaster genomic scaffold 142000013386043 section 1 of 8, complete sequence
Position Repeat Coverage Repeat
7376 TC * 12 22/24 TC TC TC TT TC TC TC TC TC TC TC CC
102947 AT * 12 22/24 AT AT AT AT AT AT AT AT GT AT AT GT
114759 TA * 10 18/20 TA TC TA TA TA TC TA TA TA TA
114781 TA * 11 20/22 TA TA GA TA TA TA TA TA TA TC TA
175976 AG * 16 29/32 AG AG AA AG AG AG AG AG AG AG AG AG AG AG AG CT
188364 GT * 10 18/20 GT GT GT GT GT GT GG GT GT AT
189413 AT * 20 36/40 AT AT AC AT AT AT AT AT AT AT AA AT AT AT AT AT AT AT AT GG
189762 CA * 10 18/20 CA CA CA CG CA CA CA CA CA AA
193387 GT * 10 18/20 GT GT GT CT GG GT GT GT GT GT
196870 AT * 11 20/22 AT GA AT AT AT AT AT AT AT AT AT
242330 AT * 18 34/36 AT AT AT AT AT AT AT AT AT AT AA AT AT AT AT AT AT AA
245532 TG * 10 18/20 TG TG TG TG TG TG AG CG TG TG
246445 GT * 13 25/26 GT GT GT GT GT GT GT GT GT GT GT GC GT
252858 CA * 11 20/22 CA CG CA CA CA CA CA CA CA CG CA
266247 CA * 10 18/20 CA CC CA CA CA CA CA CA CT CA
274507 CA * 10 18/20 CA CA CA CA TA CA CA CA TA CA
280269 AT * 10 18/20 AT AT AT AT AT AT AT AT AA AA
-----------------------------------------------------------------------------------------
Total sequence length......................... 291545
Total number of repeats detected.............. 17
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 2 0 0 0 4 1 3 1 0 0 0
15 to 19 1 0 1 0 0 0 0 0 0 0 0 0
20 to 24 1 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 2 1 0 0 4 1 3 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 2 TA = 7
1 AG + 0 GA + 0 CT + 1 TC = 2
3 GT + 1 TG + 4 CA + 0 AC = 8
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7316097|gb|AE002699.1|AE002699 Drosophila melanogaster genomic scaffold 142000013386040, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298913|gb|AE003675.1|AE003675 Drosophila melanogaster genomic scaffold 142000013386040 section 5 of 5, complete sequence
Position Repeat Coverage Repeat
7564 AT * 10 18/20 AT AT AT AC AT AT AT AT AT TT
12527 AT * 13 24/26 AT AT AT AT AT AT AT AT AT AT AT GT GT
13395 AT * 10 18/20 AT AT AT AC AT AT GT AT AT AT
18251 TA * 10 18/20 TA TA TA TA TA TA TT TA TT TA
23378 TA * 10 18/20 TA TA TA TA TA TT TA TA TA TT
31603 AT * 10 18/20 AT AT AT AT GT AT GT AT AT AT
34249 TA * 10 18/20 TA AG TA TA TA TA TA TA TA TA
34969 TG * 10 18/20 TG GG GG TG TG TG TG TG TG TG
35611 TG * 10 18/20 TG TA TG TG TG TG TG TG TA TG
41199 TG * 10 18/20 TG TG TG TG TG TT TG TG TT TG
44577 AT * 10 18/20 AT AT AT GT AT AT AT AG AT AT
55980 CA * 10 18/20 CA CG CT CA CA CA CA CA CA CA
56741 TG * 10 18/20 TG TG TG TG TT TG TG TC TG TG
61185 TG * 16 29/32 TG TG TG TG TG TG TG TG TG TG TG TG TG TT TT TT
63470 GT * 48 88/96 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT AT GT GT GT GT GT GT GT GT AT GT GT GT GT GT GT AT GT GT GC GA AC GG
66127 TG * 36 66/72 TG CG TG TG TT TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TT GG CT
70384 GT * 13 24/26 GT GA GT GT GT GT GT GT GT GT GT TT GT
77230 AG * 13 24/26 AG AG AG AG TG AG AG AG AG AG AG GG AG
90559 AT * 10 18/20 AT AT TT AT AT AT AT AT TT AT
96658 AC * 10 18/20 AC AC GC GC AC AC AC AC AC AC
126025 AC * 13 24/26 AC AC CT AC AC AC AC AC AC AC AC AC AC
128722 CA * 11 20/22 CA CA TA CA CG CA CA CA CA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 145786
Total number of repeats detected.............. 22
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 6 3 1 0 2 2 4 1 0 0 0 0
15 to 19 0 0 0 0 0 0 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 1 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 1 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 6 3 1 0 2 2 6 2 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
6 AT + 3 TA = 9
1 AG + 0 GA + 0 CT + 0 TC = 1
2 GT + 6 TG + 2 CA + 2 AC = 12
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298877|gb|AE003674.1|AE003674 Drosophila melanogaster genomic scaffold 142000013386040 section 4 of 5, complete sequence
Position Repeat Coverage Repeat
11477 AT * 19 35/38 AT AT AT AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT TA
36521 TG * 10 18/20 TG AG TG TG TG TC TG TG TG TG
64950 TG * 10 19/20 TG TG TG TG TG TG TG AG TG TG
96994 TA * 13 24/26 TA TA TA TA TA TA TA TA TT TA CA TA TA
155953 GT * 13 24/26 GT GT GT GT GT GA GT GT GT GT GT GT GA
156269 TA * 30 54/60 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA CA TA CA TA TG AC TA TA TA TA TC
156773 CT * 10 18/20 CT CT CC CT CT CT CT CC CT CT
160861 CA * 16 30/32 CA CA CA CA CA CA CA CA CA CA CA CA CG CG CA CA
181530 TA * 11 20/22 TA TA TA CA TA TA TG TA TA TA TA
211199 TG * 15 28/30 TG TG TG TG TG TG TG TG TG TG TG TG TG TT GG
220795 GA * 13 24/26 GA GA GA GA CA GA GG GA GA GA GA GA GA
240371 CA * 12 22/24 CA GA CA CA CA AA CA CA CA CA CA CA
247315 CT * 12 22/24 CT CG TT CT CT CT CT CT CT CT CT CT
252538 GT * 10 18/20 GT GT GT GC GT GT GT GG GT GT
252664 AC * 16 30/32 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC TT
278445 GT * 10 18/20 GT GT GT GT GT GT GT GT GT AG
-----------------------------------------------------------------------------------------
Total sequence length......................... 298028
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 2 0 1 0 1 2 3 0 2 0 0
15 to 19 1 0 0 0 1 1 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 1 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 3 0 1 1 2 3 3 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 3 TA = 4
0 AG + 1 GA + 2 CT + 0 TC = 3
3 GT + 3 TG + 2 CA + 1 AC = 9
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298860|gb|AE003673.1|AE003673 Drosophila melanogaster genomic scaffold 142000013386040 section 3 of 5, complete sequence
Position Repeat Coverage Repeat
25821 AT * 13 24/26 AT AT AT AA AT CT AT AT AT AT AT AT AT
48841 TG * 10 18/20 TG TG TG TG TG TG TG GG TG GG
48896 GA * 10 18/20 GA GA GC GA GA GA GA GA GA GC
54276 AC * 10 18/20 AC GC AC AC AC AC AC AC AC GC
56852 CA * 22 40/44 CA CG CA CA CA CA CA CA CA CA CA CA CA CA CA AA CA CA CA CA CA TG
75049 CA * 13 24/26 CA CA CA TA CA CA CA CA CT CA CA CA CA
81772 TC * 12 22/24 TC TG TC TC TC TC TC TC TC TC TC CC
85527 GA * 10 18/20 GA GA AA GA GA GA GA GT GA GA
89130 CA * 13 24/26 CA TA CA CA CA CA CA CA CA CA CG CA CA
96042 CA * 17 31/34 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CC CC AA
97640 TC * 12 22/24 TC CC TC TC TC TC TC TC TC TC TT TC
103080 AT * 11 20/22 AT AT AT AC AT AT AT AT AT GT AT
107870 CA * 12 23/24 CA CA CA CA GA CA CA CA CA CA CA CA
110534 AC * 10 18/20 AC AT TC AC AC AC AC AC AC AC
110758 CA * 11 20/22 CA CA CA CA CT CA CA CA CA GA CA
143696 AT * 16 29/32 AT AT AT AT AT GT AT AT GT AT AT AT AT AT AT AA
150617 GT * 10 18/20 GT GT GC GT GT GT GT GT GT TT
163045 AC * 15 27/30 AC AC AC AC AC AA AC AC AC AC AC AC AC AC TT
163908 TG * 11 20/22 TG AG TG TG TG TG TG TG TA TG TG
171419 AG * 20 36/40 AG AG AA AG AG AG AC AG AG AG AG AG AG AG AG AG AG AG AG TT
189277 TA * 10 18/20 TA TA TA TA AA TA AA TA TA TA
228718 AT * 11 20/22 AT AT AT AT AT AT AC AT AT AT AA
237844 AT * 10 18/20 AT AT AT AT AT AT AT AT TT TT
276667 TC * 20 36/40 TC GC TC TC TC TA TC TC TC TC TC TC TC TC TC TC GC TC TC TG
290570 AG * 13 24/26 AG AG AA AG AG AA AG AG AG AG AG AG AG
294289 AT * 10 18/20 AT AT AA AT AT AA AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 309357
Total number of repeats detected.............. 26
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 1 1 2 2 4 2 1 2 0 0 0
15 to 19 1 0 0 0 1 1 0 0 0 0 0 0
20 to 24 0 0 1 0 0 1 0 0 1 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 6 1 2 2 3 6 2 1 3 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
6 AT + 1 TA = 7
2 AG + 2 GA + 0 CT + 3 TC = 7
1 GT + 2 TG + 6 CA + 3 AC = 12
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298812|gb|AE003672.1|AE003672 Drosophila melanogaster genomic scaffold 142000013386040 section 2 of 5, complete sequence
Position Repeat Coverage Repeat
6252 AT * 21 38/42 AT AC AT CT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT TT
50925 AG * 11 20/22 AG AG AG GG AG TG AG AG AG AG AG
82026 GT * 11 20/22 GT AT CT GT GT GT GT GT GT GT GT
82232 GT * 10 18/20 GT GT GT GT AT GT GT GC GT GT
83651 TG * 23 42/46 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG AG TG TA TG TG TG TG GA
90217 GT * 11 20/22 GT CT GT GC GT GT GT GT GT GT GT
98396 AC * 10 18/20 AC AA AC AC AC GC AC AC AC AC
98665 CA * 11 20/22 CA CA CG TA CA CA CA CA CA CA CA
104342 CT * 11 20/22 CT CT CG CT CT CT CT CT CT TT CT
105538 CA * 12 22/24 CA CA AG CA CA CA CA CA CA CA CA CA
121256 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AC AT AT
178260 CA * 18 33/36 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA AA TC
188913 AT * 23 42/46 AT AT AA AT AT AT AT AT AT AT AT AT AT AT GT AT AT AT GT AT GT AT AT
190285 CA * 12 22/24 CA CA AA CA CA CA TA CA CA CA CA CA
199613 AG * 10 18/20 AG AG AG AG AG AG AG AG TG TG
200468 CA * 10 18/20 CA CA CC GA CA CA CA CA CA CA
200503 AG * 10 18/20 AG AG AG AG GG AG AG AG AG AC
228230 AT * 12 22/24 AT AC AT AT AT AT AT AT AC AT AT AT
240578 AT * 10 18/20 AT AT AT AT AT AG AT AT AT AG
241557 AT * 11 20/22 AT AT AT AT AT AT AT AT TG AT AT
266032 TA * 32 58/64 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA CT TG CA GC
274226 AT * 10 18/20 AT AT TT AT TT AT AT AT AT AT
274266 CA * 11 20/22 CA TA CA CA CA CA CA CA CA CA TA
278030 TC * 10 18/20 TC TC TC AC TC TC TT TC TC TC
278675 GA * 11 20/22 GA GA GA CA GG GA GA GA GA GA GA
284141 TG * 31 57/62 TG TG GA TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TT AT
287228 CT * 13 24/26 CT TT GT CT CT CT CT CT CT CT CT CT CT
-----------------------------------------------------------------------------------------
Total sequence length......................... 301601
Total number of repeats detected.............. 27
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 0 3 1 2 5 0 3 1 2 0 0
15 to 19 0 0 0 0 0 1 0 0 0 0 0 0
20 to 24 2 0 0 0 0 0 1 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 1 0 0 0 0 1 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 6 1 3 1 2 6 2 3 1 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
6 AT + 1 TA = 7
3 AG + 1 GA + 2 CT + 1 TC = 7
3 GT + 2 TG + 6 CA + 2 AC = 13
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298787|gb|AE003671.1|AE003671 Drosophila melanogaster genomic scaffold 142000013386040 section 1 of 5, complete sequence
Position Repeat Coverage Repeat
9518 GA * 12 22/24 GA GA GA GA GA GA GA GA GA CA GA AA
14346 CA * 10 18/20 CA CA CA CA CA CA CA CA CA TC
26354 GT * 12 22/24 GT GG GT GT GT GT GT GT GT GT GA GT
43347 AT * 52 94/104 AT AT AT AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA AT GT AT AT AT AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT TA TA TT AA
73288 CA * 17 31/34 CA AG CA CA CA CA CA CA CA CA CA CA CA CA CA CA GA
126660 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG AA
144003 CA * 25 45/50 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA GA CC CA CA CA GA GG
154140 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AT TA
204984 GA * 10 18/20 GA GA GA AA GA GA GA GA GA GT
211034 CT * 10 18/20 CT CT CT CT CT CT CT CT CT AC
228572 CA * 10 19/20 CA CA CA CA CA CC CA CA CA CA
235540 CT * 14 26/28 CT CT CT GT CT CT CT CT CT CT CT CT CT CA
237977 CA * 13 25/26 CA CG CA CA CA CA CA CA CA CA CA CA CA
264099 TG * 10 18/20 TG TG TG TG TG TG TG TG TT AG
271186 GT * 10 18/20 GT GT GT GT GT GT GT GT GT AG
271784 GT * 10 18/20 GT AT GT GT GT GT GT AT GT GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 309023
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 0 0 2 0 3 2 3 0 2 0 0
15 to 19 0 0 0 0 0 1 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 1 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 1 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 0 0 2 0 5 2 3 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 0 TA = 2
0 AG + 2 GA + 2 CT + 0 TC = 4
3 GT + 2 TG + 5 CA + 0 AC = 10
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7316093|gb|AE002708.1|AE002708 Drosophila melanogaster genomic scaffold 142000013386035, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7302106|gb|AE003780.1|AE003780 Drosophila melanogaster genomic scaffold 142000013386035 section 105 of 105, complete sequence
Position Repeat Coverage Repeat
15645 CA * 16 29/32 CA CA CA CA CA CA CA CA CA CA CA CA CA CC CC CC
40689 TG * 10 18/20 TG TG TG TT TG TC TG TG TG TG
57679 TG * 10 18/20 TG TG TG TT AG TG TG TG TG TG
107159 TA * 10 18/20 TA TT TA TA TA CA TA TA TA TA
175190 CT * 10 18/20 CT CT CT CT CT CT CT CT CT TA
182216 CT * 10 18/20 CT CT CT CT CT CT CT CT CT TA
223585 AT * 10 18/20 AT AT AT AT AT AT AT AT AT TC
227096 AT * 20 36/40 AT AT GG AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 249284
Total number of repeats detected.............. 8
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 1 0 0 0 0 2 0 0 2 0 0
15 to 19 0 0 0 0 0 1 0 0 0 0 0 0
20 to 24 1 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 1 0 0 0 1 2 0 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 1 TA = 3
0 AG + 0 GA + 2 CT + 0 TC = 2
0 GT + 2 TG + 1 CA + 0 AC = 3
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7302062|gb|AE003779.1|AE003779 Drosophila melanogaster genomic scaffold 142000013386035 section 104 of 105, complete sequence
Position Repeat Coverage Repeat
20861 GT * 11 20/22 GT GT GT GT GT GT AT GC GT GT GT
40866 TG * 12 22/24 TG TG CG TG TG TG TG TA TG TG TG TG
46062 CT * 15 28/30 CT CT CT CT CT CT CT CT CT CT AA CT CT CT CT
72464 GA * 15 27/30 GA GA GA GA GA GA GA GA GA GA GA GA GA GC AC
72673 TG * 14 26/28 TG TG TG TG TG CG TG TG TG TG TG TG TG CG
77457 CA * 19 35/38 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA TA GC CA
87085 AT * 13 24/26 AT CG AT AT AT AT AT AT AT AT AT AT AT
111961 TG * 10 18/20 TG TT TG TG TG TG TA TG TG TG
113103 TA * 16 29/32 TA AA TA TA TA TA TA TA TA TA TA CA TA TA TA TT
123444 TC * 10 18/20 TC TG CC TC TC TC TC TC TC TC
133271 TG * 10 18/20 TG TG TG TG CG AG TG TG TG TG
134327 TG * 11 20/22 TG TT TG TG TG CG TG TG TG TG TG
135533 GT * 10 18/20 GT GT GT GT TT GT GT GT GT GC
135988 GT * 10 18/20 GT GT AT GT GT GT GT TT GT GT
204116 GT * 10 18/20 GT GT GT GT GT GT GT GT GT TC
-----------------------------------------------------------------------------------------
Total sequence length......................... 232064
Total number of repeats detected.............. 15
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 0 0 0 0 0 5 4 1 0 0 0
15 to 19 0 1 0 1 0 1 0 0 0 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 1 0 1 0 1 5 4 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 1 TA = 2
0 AG + 1 GA + 1 CT + 1 TC = 3
4 GT + 5 TG + 1 CA + 0 AC = 10
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7302043|gb|AE003778.1|AE003778 Drosophila melanogaster genomic scaffold 142000013386035 section 103 of 105, complete sequence
Position Repeat Coverage Repeat
6398 CA * 19 35/38 CA CG CA GA CA CA CA CA CA CA CA CA CA CA CA CA CA GA CA
7151 TA * 12 22/24 TA TA TA AA TC TA TA TA TA TA TA TA
63307 AC * 12 23/24 AC AC AC AC CC AC AC AC AC AC AC AC
67734 CA * 12 22/24 CA CA CA CG CA CA CA CA CA CA CA TA
78815 CA * 15 27/30 CA CA CA CA CA CA CA CA CA CA CA CA CA CG AT
82024 TA * 13 25/26 TA TA TA TA TA TA TA TA TA TA TA TA TN
162523 TG * 10 19/20 TG TG TG TG TG TG TG TG TG TT
206895 CA * 10 18/20 CA CA GA CA CA CA CT CA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 225108
Total number of repeats detected.............. 8
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 2 0 0 1 2 1 0 0 0 0 0
15 to 19 0 0 0 0 0 2 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 2 0 0 1 4 1 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 2 TA = 2
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 1 TG + 4 CA + 1 AC = 6
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7302015|gb|AE003777.1|AE003777 Drosophila melanogaster genomic scaffold 142000013386035 section 102 of 105, complete sequence
Position Repeat Coverage Repeat
2300 CA * 10 19/20 CA CC CA CA CA CA CA CA CA CA
11761 GT * 11 20/22 GT GT GT GT GT GT GT GT GT TT TT
17793 AC * 12 22/24 AC AG AC AG AC AC AC AC AC AC AC AC
24023 AT * 10 18/20 AT AT AT AT TA AT AT AT AT AT
24043 TA * 10 18/20 TA TA AA TA TA TA TA AA TA TA
33241 CA * 10 18/20 CA GT CA CA CA CA CA CA CA CA
34851 CA * 10 18/20 CA CA CA CA CA CG CA CA CT CA
41299 AT * 13 24/26 AT AT AT AT AT AT AT AT AT AT AT AC AA
43438 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TG TG TG GT TG TC
58413 AT * 11 20/22 AT AC AC AT AT AT AT AT AT AT AT
62484 AG * 16 30/32 AG AG CG AG AG AG AG AG AG AG AG AG AG AG AG GG
69457 AT * 10 18/20 AT AT GT GT AT AT AT AT AT AT
89531 TG * 11 20/22 TG TG TG TG TG CG TG CG TG TG TG
96086 AT * 10 18/20 AT AT AT AT AC AT AT AC AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 232000
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 1 0 0 1 3 1 1 0 0 0 0
15 to 19 0 0 1 0 0 0 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 1 1 0 1 3 2 1 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 1 TA = 6
1 AG + 0 GA + 0 CT + 0 TC = 1
1 GT + 2 TG + 3 CA + 1 AC = 7
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301994|gb|AE003776.1|AE003776 Drosophila melanogaster genomic scaffold 142000013386035 section 101 of 105, complete sequence
Position Repeat Coverage Repeat
5849 GA * 10 18/20 GA GT GA GA GA GA GC GA GA GA
25004 TA * 21 38/42 TA TA TA TA TA TA TA TA TA TA TA TG TA AA TA TA TG TA TA TA TG
35365 TG * 11 20/22 TG AG TG TG TA TG TG TG TG TG TG
36874 TG * 10 18/20 TG TG CG TG TG TG TG TG TG TT
43835 CA * 13 24/26 CA CA CA TA CA CA TA CA CA CA CA CA CA
51221 AT * 10 18/20 AT AT AC AT AT AT GT AT AT AT
62566 GT * 10 18/20 GT GT GT GT GT GT GT GT AT GA
80444 CA * 17 31/34 CA TA CA CA CA CA CA CA CA CA CA CA CA CA CA CC GA
97978 CA * 10 18/20 CA CA CC CA CT CA CA CA CA CA
120703 CA * 12 22/24 CA CA CA AA CA CA CA CA CA TA CA CA
132268 CA * 10 18/20 CA CA CA CA AA CA CA CA CA CT
148865 TA * 50 90/100 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA AA TA TA TA TA TA TA GA TA GG GG AG TA GG
152208 AG * 10 18/20 AG AG AG AG AG AG CG GG AG AG
153005 TC * 16 30/32 TC GC TC TC TC TC TT TC TC TC TC TC TC TC TC TC
153901 CA * 10 18/20 CA CA CA AA CA CA CG CA CA CA
165141 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AT GC
191634 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA CA AC
194663 AT * 10 19/20 AT AT AT AT AT AT AT TT AT AT
195031 AC * 10 19/20 AC AC GC AC AC AC AC AC AC AC
213567 AT * 14 26/28 AT GC AT AT AT AT AT AT AT AT AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 225879
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 0 1 1 1 6 2 1 0 0 0 0
15 to 19 0 0 0 0 0 1 0 0 1 0 0 0
20 to 24 0 1 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 1 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 2 1 1 1 7 2 1 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 2 TA = 6
1 AG + 1 GA + 0 CT + 1 TC = 3
1 GT + 2 TG + 7 CA + 1 AC = 11
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301969|gb|AE003775.1|AE003775 Drosophila melanogaster genomic scaffold 142000013386035 section 100 of 105, complete sequence
Position Repeat Coverage Repeat
3291 AC * 10 18/20 AC GC AC AC CC AC AC AC AC AC
9103 CT * 10 18/20 CT CT CT CT CT CT CT CT CT TA
16125 CT * 10 18/20 CT CT CT CT CT CT CT CT CT TA
91575 CT * 12 22/24 CT CT CT AT CT CT AT CT CT CT CT CT
93663 CT * 11 20/22 CT AT CT CT CT CT CC CT CT CT CT
105163 TG * 13 25/26 TG TG TG TG TG TG TG TG TG TG TG TG TA
117726 AT * 11 20/22 AT AT AT AT AT AT AT AT AT GT GT
120113 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AT CA
129616 CA * 14 26/28 CA CA CA CA CA CA CA CA CG CA CA CA CA CT
132764 AC * 10 18/20 AC AC TC AC AC AC GC AC AC AC
133038 CA * 11 20/22 CA CA CA AA CA CA CA CA CA CA CT
133596 GT * 11 20/22 GT GT GT GT GT GT GT CT CT GT GT
135545 AC * 11 20/22 AC AC AC AC AC AC AC TC GC AC AC
157492 GT * 10 18/20 GT GT GT GT CT GT GT GC GT GT
210563 CT * 10 19/20 CT CT CT CT CT CT CT CT CT TT
-----------------------------------------------------------------------------------------
Total sequence length......................... 236109
Total number of repeats detected.............. 15
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 0 0 0 3 2 1 2 0 5 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 0 0 0 3 2 1 2 0 5 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 0 TA = 2
0 AG + 0 GA + 5 CT + 0 TC = 5
2 GT + 1 TG + 2 CA + 3 AC = 8
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301938|gb|AE003774.1|AE003774 Drosophila melanogaster genomic scaffold 142000013386035 section 99 of 105, complete sequence
Position Repeat Coverage Repeat
3517 AT * 14 26/28 AT AT AC AT GT AT AT AT AT AT AT AT AT AT
25047 GT * 12 23/24 GT GT GT GT GT GT GT GT GT GT GT GC
107136 TA * 12 22/24 TA TG TA AA TA TA TA TA TA TA TA TA
107475 GT * 10 18/20 GT GT GT GT GT GC GT GT GT GC
113581 TG * 10 19/20 TG TG TG TG TG TG TG TG TG CG
123170 GT * 11 20/22 GT GT GT GT GT AT GT GT GT GT CT
127652 TG * 13 24/26 TG CA TG TG TG TG TG TG TG TG TG TG TG
145433 CA * 11 20/22 CA CG CA CA CA CA CA CA CA CA CT
181981 TG * 12 22/24 TG TG TG TG AG TG CG TG TG TG TG TG
185748 GA * 11 20/22 GA GA GA GA GC GA GA AA GA GA GA
190854 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GT CT GT GA
210809 AC * 12 22/24 AC CC AC AC AC AC AC GC AC AC AC AC
219436 TG * 11 21/22 TG TG TG TG TG CG TG TG TG TG TG
229894 AC * 14 26/28 AC AC GC AC AC AC AC AC AC AC AT AC AC AC
233645 GT * 16 30/32 GT GT GT GT GT GT GT GT GT GT GT GT GC GT GT GG
237697 TG * 10 18/20 TG TG TG GG TT TG TG TG TG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 239003
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 1 0 1 2 1 5 4 0 0 0 0
15 to 19 0 0 0 0 0 0 0 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 1 0 1 2 1 5 5 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 1 TA = 2
0 AG + 1 GA + 0 CT + 0 TC = 1
5 GT + 5 TG + 1 CA + 2 AC = 13
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301915|gb|AE003773.1|AE003773 Drosophila melanogaster genomic scaffold 142000013386035 section 98 of 105, complete sequence
Position Repeat Coverage Repeat
11222 TG * 11 20/22 TG TG TG TG TT TT TG TG TG TG TG
11741 AT * 11 20/22 AT CT AT AT AT AT AT AT AT AT AC
24686 CA * 17 31/34 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CT CA GC
50399 AT * 10 18/20 AT AT AT AC AT AC AT AT AT AT
53897 CA * 11 20/22 CA CA CA CA CA CA CA CA CC AA CA
59985 AC * 11 21/22 AC GC AC AC AC AC AC AC AC AC AC
61704 AT * 10 18/20 AT AA AT AT AT AT AT AT AT TT
65591 CA * 11 20/22 CA CC CA CA CA CA CA CA CA CC CA
68475 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT AT TT
77307 CT * 12 22/24 CT CT CT CT CT CT CT CT AT CT CT CA
80163 TG * 12 22/24 TG AA TG TG TG TG TG TG TG TG TG TG
97147 TA * 11 20/22 TA CA TA TA TA TA TA TA TA TC TA
104276 AT * 10 18/20 AT AT AA AT AT AT AT AT AT AC
108273 TG * 12 23/24 TG TG TG TG TG TG TG TG TG TG TT TG
112640 TA * 11 20/22 TA TA TA TA TA TA TG TA TA TA TT
120386 AT * 12 22/24 AT AT AT AT AT AT AT AC AT AT AA AT
132436 AT * 10 19/20 AT AT AT AT AT GT AT AT AT AT
134982 TA * 13 25/26 TA TA TA TA TA TA TA TA TA TA TA TC TA
140874 TA * 12 22/24 TA GA TA TA TA TA TA TA TA TA TA TT
142204 CA * 30 55/60 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA AA CA CA CA TG GT
142885 TA * 13 24/26 TA TA TA TA TA TA TA TA TA TA TA TA GT
147043 GT * 11 21/22 GT TT GT GT GT GT GT GT GT GT GT
147179 GT * 17 31/34 GT GA CT GT GT GT GT GT GT GT GT GT GT GT GT GT AT
153027 TG * 12 22/24 TG TG TG TG TG TG TA TG TG TG TG TT
163809 CA * 12 23/24 CA CA CA CA CA CA CA CA CA CA CA CT
164859 AC * 11 21/22 AC AC AC AC TC AC AC AC AC AC AC
165674 CA * 12 22/24 CA CT CA CC CA CA CA CA CA CA CA CA
182149 CT * 10 18/20 CT CT CC CA CT CT CT CT CT CT
187794 TG * 13 24/26 TG TG TG TG GG TG TG TG TC TG TG TG TG
192676 AT * 10 18/20 AT AT AT AT AT AA AT AC AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 226905
Total number of repeats detected.............. 30
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 7 5 0 0 2 4 5 2 0 2 0 0
15 to 19 0 0 0 0 0 1 0 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 1 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 7 5 0 0 2 6 5 3 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
7 AT + 5 TA = 12
0 AG + 0 GA + 2 CT + 0 TC = 2
3 GT + 5 TG + 6 CA + 2 AC = 16
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301871|gb|AE003772.1|AE003772 Drosophila melanogaster genomic scaffold 142000013386035 section 97 of 105, complete sequence
Position Repeat Coverage Repeat
41655 GT * 10 18/20 GT GT GT GT GT GC GT GT GG GT
82291 GT * 10 18/20 GT GT GT GC GA GT GT GT GT GT
94261 TG * 12 23/24 TG TG TG TG TG TG TG TG TG TG TG TA
100145 CT * 10 18/20 CT CT CC CT CT CC CT CT CT CT
113000 GT * 15 27/30 GT GT GT GT GT GT GT GT GT GT GC GT GT GC TT
113880 GT * 12 22/24 GT GT GA GT GT GT GT GT GT GA GT GT
121896 CA * 11 20/22 CA CA CA CA CG CA CA CA CA CA CT
122097 TG * 10 18/20 TG TG TG TG TG TT TG TG TG GG
140756 TA * 11 20/22 TA TA TA CA TA AA TA TA TA TA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 228448
Total number of repeats detected.............. 9
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 1 0 0 0 1 2 3 0 1 0 0
15 to 19 0 0 0 0 0 0 0 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 1 0 0 0 1 2 4 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 1 TA = 1
0 AG + 0 GA + 1 CT + 0 TC = 1
4 GT + 2 TG + 1 CA + 0 AC = 7
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301817|gb|AE003771.1|AE003771 Drosophila melanogaster genomic scaffold 142000013386035 section 96 of 105, complete sequence
Position Repeat Coverage Repeat
15496 TG * 10 18/20 TG TG TG CG TG TG TG TG TG CG
26264 AG * 12 22/24 AG AG AG AG AG AG AG AG AG AG AA GG
30216 CT * 10 18/20 CT CT CT CA CT CT TT CT CT CT
30520 AG * 15 28/30 AG AG AG AG GG AG AG AG AG AG AG AG AG CG AG
35212 TG * 11 20/22 TG TG TG CG TG TG TG TG TG TG GG
39126 CT * 11 20/22 CT CT CT CT GT CT CT CT CT CT CA
40665 AG * 17 31/34 AG AG AG AG AG AG AG AG AG AG AG AG CC AG AG AG CG
41428 AT * 11 20/22 AT AT AT AT AT GT AC AT AT AT AT
44968 TG * 13 24/26 TG TA TG TG TG TG TG TG TG TG TG TG TA
50401 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TG TG TG TT TT TT
51756 AT * 13 24/26 AT AT AT AT AT AT AT AT GT GT AT AT AT
52049 AT * 10 18/20 AT AT AT AT AT AT GA AT AT AT
54285 GT * 10 19/20 GT AT GT GT GT GT GT GT GT GT
54906 AT * 12 22/24 AT AT GT AT AT AT AT AC AT AT AT AT
55304 AT * 17 31/34 AT AT AC AT AT AT AT AT AT AT AT AT AT GT AA AT AT
107534 TG * 18 33/36 TG TG TG TG TG TG TG TG TG TG TG TG TG TT TG AG TA TG
143021 CA * 10 18/20 CA GA CA CA CA CA CA CA CG CA
159531 TA * 11 20/22 TA AA TA TA TA TA TA TA TA CA TA
169661 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AT CC
-----------------------------------------------------------------------------------------
Total sequence length......................... 235127
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 1 1 0 0 1 3 1 0 2 0 0
15 to 19 1 0 2 0 0 0 2 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 6 1 3 0 0 1 5 1 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
6 AT + 1 TA = 7
3 AG + 0 GA + 2 CT + 0 TC = 5
1 GT + 5 TG + 1 CA + 0 AC = 7
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301790|gb|AE003770.1|AE003770 Drosophila melanogaster genomic scaffold 142000013386035 section 95 of 105, complete sequence
Position Repeat Coverage Repeat
4035 TA * 11 20/22 TA TA TA AA TA CA TA TA TA TA TA
10727 CT * 11 20/22 CT GT CT CT CT CT CT CT CG CT CT
15933 AT * 11 20/22 AT AT AT GT GT AT AT AT AT AT AT
41724 TA * 11 20/22 TA TA TG AA TA TA TA TA TA TA TA
44149 AC * 12 22/24 AC AC CC AC AC AC AA AC AC AC AC AC
46106 TA * 10 18/20 TA TA TA TA CA TA CA TA TA TA
50255 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AT AG
51122 GT * 12 23/24 GT GT GT GT GT GT GT GT GT GT GT GG
62053 AC * 13 24/26 AC AC AC AC AC AC AT AC AC AC AC AC AG
96777 GT * 16 29/32 GT GT GT GT GT GT GT TT GT GT GT GT GT GT TT GC
97793 TA * 11 20/22 TA TA CA TA TA TA CA TA TA TA TA
124161 TG * 11 20/22 TG TG AG TG TG CG TG TG TG TG TG
125834 TG * 11 20/22 TG TG TA TG CG TG TG TG TG TG TG
125865 TG * 11 20/22 TG TG TG TG TG TG TG TA TG TT TG
128494 TG * 12 22/24 TG TG TG TG TG TG TG TG CG AG TG TG
128712 TG * 11 20/22 TG TG AG TG TG TG TG TG TG TG TA
140823 GT * 10 18/20 GT GT GT GT TT GT GT AT GT GT
143227 CA * 11 20/22 CA CA CA CA CA CA CA AA CT CA CA
150303 AC * 12 23/24 AC CC AC AC AC AC AC AC AC AC AC AC
181154 GT * 13 25/26 GT GT GT GT GT GC GT GT GT GT GT GT GT
181397 AG * 10 18/20 AG AG AG AG AG AG AG AG AG GC
182016 GT * 14 26/28 GT GT GT TT GT AT GT GT GT GT GT GT GT GT
191895 TG * 11 20/22 TG TG TG TG TG TG TG TG AT TG TG
192669 TA * 11 20/22 TA TA TA TT TG TA TA TA TA TA TA
196138 AT * 10 18/20 AT AT AT AT AT AA AT AG AT AT
197450 CA * 15 28/30 CA CA CA CA CA CA CA CG CA CA CA CG CA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 224100
Total number of repeats detected.............. 26
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 5 1 0 4 1 6 4 0 1 0 0
15 to 19 0 0 0 0 0 1 0 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 5 1 0 4 2 6 5 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 5 TA = 7
1 AG + 0 GA + 1 CT + 0 TC = 2
5 GT + 6 TG + 2 CA + 4 AC = 17
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301774|gb|AE003769.1|AE003769 Drosophila melanogaster genomic scaffold 142000013386035 section 94 of 105, complete sequence
Position Repeat Coverage Repeat
7093 CA * 18 33/36 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CC AT
49445 CA * 10 18/20 CA CA CA CA CA CA CA CA CT CC
58505 CA * 25 45/50 CA CT CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA TT TG
59216 AC * 11 20/22 AC AC AT GC AC AC AC AC AC AC AC
66699 CA * 15 27/30 CA CA CA CA CA CA CA CA CC CT CA CA CA CA CT
74989 AT * 12 22/24 AT AT AT AT AT AT AT GT AT AT AT AG
75605 AC * 13 24/26 AC AA AC AC AC AC AC AC AC AC AC AC CC
76713 GT * 10 18/20 GT GT GT GT GT GT GT GT GT TG
77540 TA * 10 18/20 TA TA TA TA TT TA TA TT TA TA
77719 AC * 18 33/36 AC TC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC GG
84127 TG * 10 19/20 TG TG TG CG TG TG TG TG TG TG
86677 CA * 11 21/22 CA CA CA CA CA CA CA CA CA CA CT
86839 CA * 13 25/26 CA CA CA CA CA CA CA CA CA CA CA CA TA
86951 AC * 11 20/22 AC AC AC GC AC AC AC TC AC AC AC
88017 CA * 14 26/28 CA CA CA CA CA CA CA CA CA CA CA CA CG AA
95427 CA * 10 18/20 CA CT CG CA CA CA CA CA CA CA
95562 CA * 10 18/20 CA TT CA CA CA CA CA CA CA CA
106521 CT * 11 20/22 CT CG CT CT CT CT CT CT CT CT CC
108192 TG * 10 18/20 TG TG TG TG TG AG TG TG TT TG
112492 TA * 10 18/20 TA TA TA TA TC TA TT TA TA TA
112979 TG * 12 23/24 TG TG TG TG TG TG TG TG TG TG TT TG
113391 AT * 11 20/22 AT AT AT AT AT AT AT AT AT TT AA
117301 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG TG CT
117328 GT * 11 20/22 GT GT TT GT GT GT GT GT GT GG GT
118025 TG * 10 18/20 TG GG TG TG CG TG TG TG TG TG
118800 GA * 11 20/22 GA TA GA GA GA GA GA GA GG GA GA
122040 GT * 10 18/20 GT GT AT GT GT GT AT GT GT GT
124213 CA * 10 18/20 CA CT CA CA CA CA CA CA CT CA
125697 GT * 16 29/32 GT GT GT GT GT GT GT GT GT GT GT GT GG CT CT GT
126113 CA * 13 24/26 CA TA CA CA CA CA CA CA CA CA CA CG CA
130536 CA * 11 20/22 CA AA CG CA CA CA CA CA CA CA CA
132711 TG * 12 22/24 TG TG TG TG TG TG TA TG TG TG TA TG
132883 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CT TA
135138 TG * 11 20/22 TG GG TG TG TG TG TG TG TG TG CG
136116 CA * 10 18/20 CA CA CA CA CA CA CA CT CA CG
137532 GT * 11 20/22 GT GT GT GT GT GT GT GT GC GT GA
145377 CA * 11 20/22 CA TG CA CA CA CA CA CA CA CA CA
150435 TG * 12 22/24 TG TG TG TG TG TG TG TA TT TG TG TG
154427 CA * 17 31/34 CA CA CA CA CA CA CA CA CA CA CA CA CA TG CA CA CC
161844 GT * 12 22/24 GT GT GT GT GT GT GT AT GT GT GT GG
161944 GT * 11 20/22 GT AT GT GT AT GT GT GT GT GT GT
163689 GT * 12 22/24 GT TT GT AT GT GT GT GT GT GT GT GT
170636 AT * 13 24/26 AT AT AT AT GT AT AT AT AT AT AT AT AG
171415 AT * 11 20/22 AT AT AT AT GC AT AT AT AT AT AT
175211 AC * 10 18/20 AC AC AC AC AT GC AC AC AC AC
179869 CA * 20 37/40 CA AA TA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CC
180840 TG * 11 20/22 TG TG CG TG TG TG TG TG TG TG AG
181026 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TG TG TG TG CT GG
182586 CT * 13 24/26 CT CT CT CT CT CT CT CT CT CT CT TT AT
185783 GA * 13 24/26 GA GA AA GA AA GA GA GA GA GA GA GA GA
192365 GT * 11 20/22 GT GT GT GT GT GC GT GT GT GT GG
192731 CA * 12 22/24 CA CA CA CA AC CA CA CA CA CA CA CA
193428 CA * 10 18/20 CA CA CA CA CA CA AA CA CA CC
194145 TG * 15 27/30 TG AG TG TG TG TG TG TG TG TG TG TG TG TG GA
194988 AC * 16 29/32 AC AC AC AC GC AC GC AC AC AC AC AC AC AC AC AA
195342 CA * 10 18/20 CA CA CA AA CA CA CA CA CG CA
195377 AC * 10 18/20 AC AC AC AC AC CC AC AC AC AT
198308 CA * 10 18/20 CA CA CA CA CA TT CA CA CA CA
199934 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CA AG
214911 AT * 11 20/22 AT AC AT AT GT AT AT AT AT AT AT
227698 GT * 11 20/22 GT GT GT GG GT GC GT GT GT GT GT
229881 TA * 10 18/20 TA TG TA TA TA TA TA TA TG TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 234161
Total number of repeats detected.............. 62
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 3 0 2 5 17 9 9 0 2 0 0
15 to 19 0 0 0 0 2 3 2 1 0 0 0 0
20 to 24 0 0 0 0 0 1 0 0 0 0 0 0
25 to 29 0 0 0 0 0 1 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 3 0 2 7 22 11 10 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 3 TA = 8
0 AG + 2 GA + 2 CT + 0 TC = 4
10 GT + 11 TG + 22 CA + 7 AC = 50
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301730|gb|AE003768.1|AE003768 Drosophila melanogaster genomic scaffold 142000013386035 section 93 of 105, complete sequence
Position Repeat Coverage Repeat
7449 TG * 10 18/20 TG CG TG TG TA TG TG TG TG TG
14558 TA * 11 20/22 TA CA TA TA TA TA TA TA TA TA AA
31354 GT * 12 22/24 GT GC GT GT GT GT TT GT GT GT GT GT
36595 CA * 17 31/34 CA CA CA CA CA CA CA CA CA CA CA CA CA AA CA CT CG
44872 TG * 17 31/34 TG TG TG TG TG TG TG TG TG TG TG TG TG CT AG TG TG
56818 CA * 13 24/26 CA CT CA CT CA CA CA CA CA CA CA CA CA
62084 TG * 10 18/20 TG TG TG TG TG TG TG TG TA AG
85577 TA * 10 18/20 TA TA TA TA TA CA TA TA TA TT
89600 CT * 10 18/20 CT CT TT CC CT CT CT CT CT CT
140683 GT * 11 20/22 GT GT AT GT GT GC GT GT GT GT GT
155603 GT * 12 22/24 GT GT GT GT GC GT GT GT GT GT GA GT
158589 AC * 13 24/26 AC AC AC AC AC AC AC CC AC AC AC AC AG
161811 AC * 12 22/24 AC TC AC AC AC AC AC AC AC AC TC AC
173913 GT * 11 20/22 GT GT GA GT GT GT GT GT GT GT TT
174253 CA * 16 29/32 CA CA CA CA CA CA CA CA CA CA CA CG CA AA CC CA
177265 TG * 12 22/24 TG GG TG TG TG TG TG TG TG TG TG TA
189119 GT * 11 20/22 GT GT GT GT AT GT GT GT GT GT GG
224158 GT * 10 18/20 GT GT GT GT GC GT GT GT GA GT
225299 AG * 10 18/20 AG AA AG AG AG AG GG AG AG AG
240628 CA * 18 34/36 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA GG
-----------------------------------------------------------------------------------------
Total sequence length......................... 242815
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 2 1 0 2 1 3 6 0 1 0 0
15 to 19 0 0 0 0 0 3 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 2 1 0 2 4 4 6 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 2 TA = 2
1 AG + 0 GA + 1 CT + 0 TC = 2
6 GT + 4 TG + 4 CA + 2 AC = 16
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301701|gb|AE003767.1|AE003767 Drosophila melanogaster genomic scaffold 142000013386035 section 92 of 105, complete sequence
Position Repeat Coverage Repeat
36637 CA * 10 18/20 CA CA CA CA TA GA CA CA CA CA
40983 CA * 10 19/20 CA CA CA CA CA CA CA CA CA CG
53840 TC * 21 38/42 TC CC TC TC TC TC TC TC TC TC TC TC TC TC TC TC CC TA TC GC TC
96068 TG * 10 19/20 TG TG TG TG TG TG CG TG TG TG
111090 TA * 11 20/22 TA TT TA TA TA AA TA TA TA TA TA
124271 GT * 10 18/20 GT GT GC GT GT GT GT GT GT TT
124307 TG * 11 20/22 TG AG TG TG TG TG TG TG TG TG TT
129421 GT * 13 24/26 GT GT GA GC GT GT GT GT GT GT GT GT GT
129997 TG * 11 20/22 TG TA TG TG TG TG TG TG TG TT TG
130126 AC * 10 18/20 AC AC TC AC AC AA AC AC AC AC
132721 GT * 10 18/20 GT GT GT GT GT GT TT AT GT GT
132930 CA * 13 24/26 CA CA CC CA CA CA CA CA CA CA CA CT CA
134693 GT * 15 28/30 GT GT GT GT GT GT GT GT GT GT GT GT GT GC TT
137397 TG * 17 31/34 TG TA CG TG TG TG TG TG TG TG TG TG TG TG TG TG GG
137827 GT * 16 29/32 GT GT GT GC GT AT GT GT GT GT GT GT GT GT GT GC
138907 GT * 11 20/22 GT TT GT TT GT GT GT GT GT GT GT
141396 AC * 10 19/20 AC AC AC GC AC AC AC AC AC AC
141786 CA * 11 20/22 CA CA CA CA CA CA CA CA CG CA CT
142131 AC * 11 20/22 AC AC AC AC AC AC AC AT TC AC AC
144951 TG * 12 22/24 TG TG CG TT TG TG TG TG TG TG TG TG
153672 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG TT GG
160023 GT * 12 23/24 GT GT GT GT GT GT GT GT GT GT GT GA
162429 CA * 10 18/20 CA CA CA CA CA GA CA CA CA GA
162997 TG * 18 33/36 TG TC TG GG TG TG TG TG TG TG TG TG TG TG TG GG TG TG
169736 AT * 22 40/44 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT GT GT GT
171380 TG * 11 20/22 TG TG TG TG TG TG TG TG TA AG TG
174898 TG * 11 20/22 TG AG TG TG TG TG TG TG TG TG TT
179434 TA * 10 18/20 TA TA TA GA TG TA TA TA TA TA
180342 CA * 10 18/20 CA CA GA CA CA CA CA CG CA CA
180858 GT * 10 18/20 GT GT GT GT GT GT GT GC TT GT
181045 TG * 13 25/26 TG TG TG TG TG TG TG TG TG TG TG TG TA
181984 CA * 11 20/22 CA CT GA CA CA CA CA CA CA CA CA
183381 TG * 10 18/20 TG TG TG TG TG TG TG AG TT TG
188160 CA * 12 22/24 CA CA CA AA CA CA CA CA CG CA CA CA
188187 AC * 10 18/20 AC AC AT AC AT AC AC AC AC AC
197167 TC * 10 18/20 TC TC CC TC TC TC CC TC TC TC
201011 AT * 10 18/20 AT AT AC AT AT AC AT AT AT AT
201514 GT * 11 20/22 GT GT GT GT GT AT GT AT GT GT GT
201729 GT * 11 20/22 GT GT GT GC GT TT GT GT GT GT GT
206761 GT * 17 31/34 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT TG GC
206858 AT * 10 18/20 AT AT AT AT AT AC GT AT AT AT
209093 CA * 13 25/26 CA CA AA CA CA CA CA CA CA CA CA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 225155
Total number of repeats detected.............. 42
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 2 0 0 4 9 9 8 1 0 0 0
15 to 19 0 0 0 0 0 0 2 3 0 0 0 0
20 to 24 1 0 0 0 0 0 0 0 1 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 2 0 0 4 9 11 11 2 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 2 TA = 5
0 AG + 0 GA + 0 CT + 2 TC = 2
11 GT + 11 TG + 9 CA + 4 AC = 35
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301683|gb|AE003766.1|AE003766 Drosophila melanogaster genomic scaffold 142000013386035 section 91 of 105, complete sequence
Position Repeat Coverage Repeat
2190 AC * 15 28/30 AC AC AC AC AC AC AC AC AC AC AC AC AC AT TC
6802 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GA GT GA
12205 GT * 12 22/24 GT AT GT GT GT GT GT GT GT GG GT GT
17440 TG * 10 18/20 TG TG TG TG TG TG TC CG TG TG
58494 CA * 11 20/22 CA CC CA CA CA CA CA CA CA CA GA
76421 CT * 13 24/26 CT CT CA TT CT CT CT CT CT CT CT CT CT
90101 AT * 10 19/20 AT AT AT AT AT AT AT AT GT AT
122905 TA * 11 20/22 TA TA TA TG TA TA TA TA TA TC TA
134490 GT * 10 18/20 GT GT GT GT GT GT GT GC GG GT
136361 AC * 11 20/22 AC GC AC AC AC AC AC AC AC AT AC
191948 CA * 13 24/26 CA AA CA CA CA CA CA CA CA CA CA CA TA
196660 TG * 13 24/26 TG CG CG TG TG TG TG TG TG TG TG TG TG
221113 CA * 11 20/22 CA CA TA CA CA CA CA CA CA CA CT
-----------------------------------------------------------------------------------------
Total sequence length......................... 225894
Total number of repeats detected.............. 13
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 1 0 0 1 3 2 3 0 1 0 0
15 to 19 0 0 0 0 1 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 1 0 0 2 3 2 3 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 1 TA = 2
0 AG + 0 GA + 1 CT + 0 TC = 1
3 GT + 2 TG + 3 CA + 2 AC = 10
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301668|gb|AE003765.1|AE003765 Drosophila melanogaster genomic scaffold 142000013386035 section 90 of 105, complete sequence
Position Repeat Coverage Repeat
3070 CA * 11 20/22 CA CA CA CA CA CA CG CA CG CA CA
6155 GT * 11 20/22 GT GT GT GT GT GC GT GC GT GT GT
11857 TC * 10 18/20 TC TC AA TC TC TC TC TC TC TC
24968 GT * 18 33/36 GT GA GT GT GT GT GT GT TT GT GT GT GT GT GT GT GT GG
38669 AC * 16 29/32 AC AC AC AC AC AC AC AC AC AC AT AC AC AT AC AG
47545 TG * 12 22/24 TG CG TG AG TG TG TG TG TG TG TG TG
47593 GT * 11 20/22 GT GT GT GT GA GT GT GT GT GT GA
48828 CA * 11 20/22 CA CA CA CA CA CA CA CA CA TA GA
56618 CA * 10 18/20 CA CA CA CA CA CA CA CA CA GC
58531 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TG TG TG AG TG CA
61497 GT * 10 18/20 GT AT AT GT GT GT GT GT GT GT
62818 GT * 10 18/20 GT GT TT GT GT GT GT GT GG GT
67508 GA * 11 20/22 GA GA TA GA GA AA GA GA GA GA GA
67531 AG * 15 28/30 AG AG AG AG AG AA AG AG AG AG AG AG AG AG AA
72500 CA * 10 18/20 CA CA CA CT TA CA CA CA CA CA
72641 AC * 15 27/30 AC AC AC AC AC AC AC AC AC AC AA AC AC AC GG
76508 TA * 12 23/24 TA TA TA TA TA TA TA CA TA TA TA TA
79359 TG * 13 24/26 TG TG TG TG TA TG TG TG TG TG AG TG TG
80464 AC * 16 29/32 AC CC GC AC AC AC AC AC AC AC AC AC AC AC AC AG
81666 TG * 13 24/26 TG TG TG TG TG TG TG TG TG GG TG TG GG
87441 TC * 11 20/22 TC TC TC TC TC TA GC TC TC TC TC
87970 AG * 10 18/20 AG CG AG AG AG AG AG AG AG AC
90286 CA * 15 27/30 CA CA CC CA AA CA CA CA CA CA CA CA CA CA CG
95186 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG AA
97077 GT * 10 18/20 GT GT GT GT GT GT GT GT GT TA
116084 AC * 11 20/22 AC AC AC AC AC AC AC GC AC AC AA
118010 CA * 10 18/20 CA CA CA CA CA CT CA CA CA GA
119981 TG * 10 18/20 TG TG CA TG TG TG TG TG TG TG
138098 AC * 10 19/20 AC AC AC AC AC AC AC AC AC TC
139410 GT * 11 20/22 GT GA GT GT GA GT GT GT GT GT GT
145113 AC * 13 24/26 AC AC AC AC AC AC AC AC AT AC AC AC AA
149768 AC * 10 18/20 AC AC AG AC AC AC AC AC AC AG
153907 CA * 12 22/24 CA CA CA CA CA CA GA CA CA CG CA CA
215975 CA * 11 21/22 CA CA CA CA CA CA CA CG CA CA CA
217519 CA * 19 35/38 CA CA CA CA CA CA CA CA CA CA CA CA CA CA TA CA CA CT CT
222262 GT * 10 18/20 GT GT GT GT GT GT GT GC GA GT
222408 GT * 11 20/22 GT TA GT GT GT GT GT GT GT GT GT
229547 AC * 11 20/22 AC AC AC AC CC AC AC AC AC AC GC
230131 CA * 10 18/20 CA CA CA CA CT CA CA CA CA CC
230758 GT * 10 18/20 GT GT GT GT GT GT GT GT GT AC
231696 CA * 10 18/20 CA CA CA CA TA CA CA CA CA CT
237406 CA * 11 20/22 CA CT CA CA CA CA CA CA TA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 239098
Total number of repeats detected.............. 42
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 1 1 1 5 10 5 9 2 0 0 0
15 to 19 0 0 1 0 3 2 1 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 1 2 1 8 12 6 10 2 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 1 TA = 1
2 AG + 1 GA + 0 CT + 2 TC = 5
10 GT + 6 TG + 12 CA + 8 AC = 36
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301658|gb|AE003764.1|AE003764 Drosophila melanogaster genomic scaffold 142000013386035 section 89 of 105, complete sequence
Position Repeat Coverage Repeat
7161 TG * 10 18/20 TG TG TG TG TG TG TG CA TG TG
18860 GT * 16 30/32 GT GT GT CT CT GT GT GT GT GT GT GT GT GT GT GT
19391 TG * 16 29/32 TG TG TG TG TG TG TG TG TG TG CG TG TG CG TG CG
20040 GT * 10 18/20 GT GT GT AT GT GT AT GT GT GT
27442 AC * 10 18/20 AC AG GC AC AC AC AC AC AC AC
49070 AT * 12 22/24 AT AT AT AT AT AT AT AC AT AT AT GT
57092 AG * 10 18/20 AG AG AG AG AG AG AG AG AG TT
58678 GT * 10 18/20 GT GT GC GT GT GT GT TT GT GT
64623 AC * 10 18/20 AC AC AC AC AC AC AC AC AC GA
69075 AC * 10 18/20 AC AC AC AA AC AC AC AC GC AC
98413 TG * 10 19/20 TG TT TG TG TG TG TG TG TG TG
104375 TA * 11 20/22 TA TA TA TA TA TT TG TA TA TA TA
111052 CA * 10 18/20 CA CA CA CA CA CA AA TA CA CA
120673 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CT CA CG
127476 CA * 11 20/22 CA CA CA CT CG CA CA CA CA CA CA
130041 CA * 10 18/20 CA CA CA CA CA CG CG CA CA CA
134259 GT * 13 24/26 GT TT TT GT GT GT GT GT GT GT GT GT GT
134870 CA * 11 20/22 CA CA CA CA CG CA CA CA CA TA CA
140250 AT * 10 18/20 AT AT AT AT AT AT AT GT AG AT
140958 AT * 15 28/30 AT AT AT AT AT AT AC AT AT AT AT AT AT AT AC
141766 CA * 12 22/24 CA CA CA CA CA CC CA CA CA CA CA CT
143465 CA * 12 23/24 CA CA CA CA CA CA CA CA CA CA CA TA
148271 AC * 10 18/20 AC AC AC AT GC AC AC AC AC AC
152629 AC * 10 18/20 AC AC AC AT GC AC AC AC AC AC
169565 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA CA TG
171952 AC * 11 20/22 AC CC AC AA AC AC AC AC AC AC AC
175654 CA * 10 18/20 CA CA CA CA CA CA CA CA CC TA
199083 AC * 11 20/22 AC CC AC AC AC AC AC AC AC AC AA
216227 GT * 13 24/26 GT AT TT GT GT GT GT GT GT GT GT GT GT
220016 AT * 15 28/30 AT AT AT AT TT AT AT AT AT AT AT GT AT AT AT
221894 GT * 10 18/20 GT AT GT GT GT GT GT GT GT TT
226802 AT * 11 20/22 AT AT AT AT AT AT AA AT AT AT AG
-----------------------------------------------------------------------------------------
Total sequence length......................... 231691
Total number of repeats detected.............. 32
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 1 1 0 7 9 2 5 0 0 0 0
15 to 19 2 0 0 0 0 0 1 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 1 1 0 7 9 3 6 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 1 TA = 6
1 AG + 0 GA + 0 CT + 0 TC = 1
6 GT + 3 TG + 9 CA + 7 AC = 25
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301637|gb|AE003763.1|AE003763 Drosophila melanogaster genomic scaffold 142000013386035 section 88 of 105, complete sequence
Position Repeat Coverage Repeat
358 TG * 11 20/22 TG TG CG TG CG TG TG TG TG TG TG
664 AC * 13 24/26 AC GC AC AC AC AC AC AC AC GC AC AC AC
1904 AT * 11 20/22 AT AT AT GT AT AT AT AT AT AT AG
4280 AC * 12 22/24 AC AC AC AC AT AC AA AC AC AC AC AC
8957 TG * 16 29/32 TG TG TG TG TA CG TG TG TG TG TG TG TG TG TG GG
10785 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GT AT GT AT
17193 CA * 12 22/24 CA CA CA CA CA CA CA CA CA AA CA CG
17453 TG * 13 24/26 TG CG CG TG TG TG TG TG TG TG TG TG TG
19279 TG * 11 21/22 TG TG TG TG TG TG TG TG TG TC TG
51160 GT * 13 24/26 GT GT GT GT GT GT GT GT GT TT GC GT GT
53576 AT * 11 20/22 AT AC AT AT AT AT AT AT AT GT AT
76076 TG * 10 18/20 TG TG GG TT TG TG TG TG TG TG
76730 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG CC
79913 AT * 13 24/26 AT AT AT AT AT AT AT AT AT AT AT GT GT
86056 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CT CA TA
89670 GT * 11 20/22 GT GT GT TG GT GT GT GT GT GT GT
92830 AG * 12 23/24 AG AG AG AG AG AG AG AG AG AG AA AG
97206 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT GT AG
97414 TG * 10 18/20 TG TG TA TG TG TT TG TG TG TG
100883 CA * 12 22/24 CA CA CT AA CA CA CA CA CA CA CA CA
102688 GT * 11 20/22 GT GC GT AT GT GT GT GT GT GT GT
103095 AC * 11 21/22 AC AC AC AC AC AC AC AC AC AC AA
103417 GT * 12 22/24 GT GA GT GC GT GT GT GT GT GT GT GT
103740 TG * 11 20/22 TG TG TA TG TG TG TG TG TG TG TA
109564 TC * 10 18/20 TC TA TC TC TC TC TC TC TT TC
109584 TG * 11 20/22 TG TG TT TG TG TG TG TG TG TG CG
112949 CA * 10 18/20 CA CA CA CA TA GA CA CA CA CA
116204 TG * 11 21/22 TG TA TG TG TG TG TG TG TG TG TG
120992 GT * 11 20/22 GT AT GT TT GT GT GT GT GT GT GT
131062 CT * 10 18/20 CT CT CT CT CT CT CT CC TT CT
131272 TG * 10 19/20 TG TG TG TG TG TG TG CG TG TG
131393 GT * 12 23/24 GT GT GT GT GT GT GT GT GT GT GT GA
132760 GT * 10 18/20 GT CT GT TT GT GT GT GT GT GT
132894 GT * 12 22/24 GT TT GT GT GT GT GT GC GT GT GT GT
140603 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG TG CC
146143 CA * 16 30/32 CA AG CA CA CA CA CA CA CA CA CA CA CA CA CA CA
147979 TG * 12 22/24 TG TG TG CT TG TG TG TG TG TG TG TG
148007 TG * 12 22/24 TG TC TC TG TG TG TG TG TG TG TG TG
150698 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT GA GC
157916 TG * 10 18/20 TG TT TA TG TG TG TG TG TG TG
159050 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA CC AA
162136 AT * 11 20/22 AT AT AT AT AT AT AT AT AT TT TT
166246 CA * 11 20/22 CA CC CA CA CT CA CA CA CA CA CA
182102 TA * 10 18/20 TA TA TA TA TA TA TA TA TT TT
190575 AT * 12 22/24 AT AT AT AT AT CT TT AT AT AT AT AT
192005 AG * 12 22/24 AG AA AG CG AG AG AG AG AG AG AG AG
193700 TA * 10 18/20 TA TA TA TA TA TA TA TA TG AA
194754 AT * 16 29/32 AT AT AT AT AT AT AT AT AC AT AT AT AT AT AC AG
196607 TG * 11 20/22 TG CG TG TG TG TG TG TG TG TG AG
202607 GT * 11 20/22 GT AT GA GT GT GT GT GT GT GT GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 203557
Total number of repeats detected.............. 50
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 2 2 0 3 6 15 12 1 1 0 0
15 to 19 1 0 0 0 0 1 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 6 2 2 0 3 7 16 12 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
6 AT + 2 TA = 8
2 AG + 0 GA + 1 CT + 1 TC = 4
12 GT + 16 TG + 7 CA + 3 AC = 38
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301615|gb|AE003762.1|AE003762 Drosophila melanogaster genomic scaffold 142000013386035 section 87 of 105, complete sequence
Position Repeat Coverage Repeat
7339 TA * 11 20/22 TA TA TA TA TA TA TA TG TA TG TA
52401 AT * 10 18/20 AT AT AT AT AT GT AC AT AT AT
56230 TG * 10 18/20 TG TG TG TG TA TT TG TG TG TG
63502 CA * 12 22/24 CA CA CA CA CA TA CA CA CA TA CA CA
71469 TG * 10 18/20 TG CG TG TG TT TG TG TG TG TG
73107 TG * 10 18/20 TG TG TA TG TG TG TG TG AG TG
75653 GA * 12 22/24 GA AA GA GA AA GA GA GA GA GA GA GA
92835 TG * 11 20/22 TG TG TG TG TG CG AG TG TG TG TG
96850 TG * 10 18/20 TG CG TG TG TG TG TG AG TG TG
102443 AT * 10 18/20 AT AA AT AT AT AT AT AT AT TT
105886 CA * 10 18/20 CA CA CA CA CA CA CA CA CC CC
107994 AT * 13 24/26 AT TT CT AT AT AT AT AT AT AT AT AT AT
109746 AG * 12 22/24 AG AC AG AG AG AG AG AG AG AG AG GG
113495 AC * 12 22/24 AC AC AC AC AC AC AC GC AC AC AA AC
130340 CA * 17 31/34 CA TT CA CA CA CA CA CA CA CA CA CA CA CA CA CA CG
133406 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AC TT
135556 TC * 13 24/26 TC GC TT TC TC TC TC TC TC TC TC TC TC
136441 CA * 10 18/20 CA AA CA CA CA CA CA CA CT CA
148423 TG * 10 18/20 TG TG TA TA TG TG TG TG TG TG
151319 GT * 10 18/20 GT GT GT GT GT GT GT CC GT GT
151539 AC * 11 20/22 AC CA AC AC AC AC AC AC AC AC AC
154291 TG * 15 28/30 TG TG TG TG TG TG TG TG TG TG TG TG TG TC TC
164381 CA * 12 22/24 CA CA CA CA CT CA AA CA CA CA CA CA
165859 AT * 11 20/22 AT AT AC AT AT AT CT AT AT AT AT
170190 CA * 11 20/22 CA CA CA CG CA CA CA TA CA CA CA
173398 AT * 12 22/24 AT AT AT AT AT AT AT AT AT AT TT AA
173964 GT * 11 20/22 GT GT GT GT GT GT GT GT GA AT GT
178009 TG * 15 28/30 TG TG TG CT TG TG TG TG TG TG TG TG TG TG TG
179954 GT * 12 22/24 GT GT GC GT GC GT GT GT GT GT GT GT
188472 AT * 12 22/24 AT AT AT AT AC AT AT GT AT AT AT AT
191828 CA * 11 20/22 CA CA CA CA CA CA CA CC CA CA TA
192979 AT * 10 18/20 AT AT AT AT AT AT AT TT AG AT
194401 AC * 10 18/20 AC GT AC AC AC AC AC AC AC AC
195250 AC * 15 27/30 AC AC TC AC AC AC AC AC AC AC AC AC AC AA AG
198162 TG * 12 22/24 TG AG TG TG TG TC TG TG TG TG TG TG
212457 TG * 11 20/22 TG GA TG TG TG TG TG TG TG TG TG
213660 CA * 13 24/26 CA AA CA CA CA CA CA CA CA CA CA CA CG
-----------------------------------------------------------------------------------------
Total sequence length......................... 230995
Total number of repeats detected.............. 37
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 7 1 1 1 4 7 8 3 1 0 0 0
15 to 19 0 0 0 0 1 1 2 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 7 1 1 1 5 8 10 3 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
7 AT + 1 TA = 8
1 AG + 1 GA + 0 CT + 1 TC = 3
3 GT + 10 TG + 8 CA + 5 AC = 26
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301591|gb|AE003761.1|AE003761 Drosophila melanogaster genomic scaffold 142000013386035 section 86 of 105, complete sequence
Position Repeat Coverage Repeat
390 CA * 10 18/20 CA CT CT CA CA CA CA CA CA CA
3671 TG * 12 22/24 TG TG TG TG TG TG TA TG TG TA TG TG
5266 GA * 11 20/22 GA GC GA GG GA GA GA GA GA GA GA
6279 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG CT
7270 TG * 15 27/30 TG TG TG TG CG TG TG TG TG TG TG TA TG TG TT
8697 TG * 12 22/24 TG TG TG TG CG TG TG TG TG TG TG CG
19406 TA * 11 20/22 TA TA TA TA TA TA TA TA TA TG TC
31858 AT * 10 18/20 AT AC AT AT AT AT AT AT AT AG
38884 CT * 10 18/20 CT CT GC CT CT CT CT CT CT CT
41817 AC * 10 18/20 AC AC CC AC AC AC GC AC AC AC
45509 TG * 10 18/20 TG TG TG TC TG TG TG TA TG TG
51666 TG * 11 20/22 TG TG TG TG TG TG TG TG TG CA TG
55356 TG * 13 24/26 TG TG TG CG TG TG TG TG TG TC TG TG TG
55781 AC * 12 22/24 AC AC AC AC AC AC GC AC AC GC AC AC
63019 CA * 10 19/20 CA CA CA CA CA CA CA CA CT CA
63870 CA * 13 25/26 CA CA CA CC CA CA CA CA CA CA CA CA CA
68541 CA * 16 29/32 CA CA CA CA CA CA CA CA CA CA CA CA TA CA CA TT
82239 AG * 10 18/20 AG AG TG AG AG AG AG AG AG CG
97707 AC * 10 18/20 AC AC AC AC AA AC GC AC AC AC
104211 GT * 16 29/32 GT AA GT GT GT GT GT GT GT GT GT GT GT GT GA GT
125524 TA * 12 22/24 TA TA TA TA CC TA TA TA TA TA TA TA
125622 GT * 11 20/22 GT GT GT GT GT GT GT GA GT GA GT
135688 CA * 15 28/30 CA CA CA CA CA CA CA CA CA CA CA CA CA CA TG
144334 AC * 11 20/22 AC AC AC AC AC AG GC AC AC AC AC
144469 TG * 11 20/22 TG TG TG TG CG TG TG TG TG TG CG
170735 AC * 13 24/26 AC GC AC AC AC AC AC AC AC GC AC AC AC
173135 GT * 10 18/20 GT GT GT GT GT AT CT GT GT GT
178217 AT * 11 20/22 AT AG AT AT AT AT GT AT AT AT AT
182179 CA * 10 18/20 CA CA CA CA CA CA CA CA GA GA
189896 TA * 11 20/22 TA TA TA TA TA TA TA TA TG TA TG
191512 GT * 10 18/20 GT GA GC GT GT GT GT GT GT GT
204533 TA * 16 29/32 TA TT TA TA TA TG TA TA TA TA TA TA TA TA TA GA
218126 AG * 10 18/20 AG AC CG AG AG AG AG AG AG AG
220071 TG * 10 18/20 TG TG TG TG TG TG TG TG TA TC
-----------------------------------------------------------------------------------------
Total sequence length......................... 224614
Total number of repeats detected.............. 34
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 3 2 1 5 4 8 3 0 1 0 0
15 to 19 0 1 0 0 0 2 1 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 4 2 1 5 6 9 4 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 4 TA = 6
2 AG + 1 GA + 1 CT + 0 TC = 4
4 GT + 9 TG + 6 CA + 5 AC = 24
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301559|gb|AE003760.1|AE003760 Drosophila melanogaster genomic scaffold 142000013386035 section 85 of 105, complete sequence
Position Repeat Coverage Repeat
32820 CA * 11 20/22 CA CA CG CA CA CT CA CA CA CA CA
32848 CA * 12 22/24 CA CA CA CA CA CA CA CA CG CA CA CT
37138 CA * 11 20/22 CA CA CA CA CA CA CA CA TG CA CA
39329 AT * 10 19/20 AT AT AT AT AT AT AT AT AT AN
42622 TA * 10 19/20 TA TA TG TA TA TA TA TA TA TA
44053 AC * 13 25/26 AC AC AC AC AC AC AC AC AC AC AC AC AG
61162 TG * 10 18/20 TG TG TG TG TG TG CG TG TG TA
77019 TG * 12 22/24 TG CG TG TG TG TG TG TG TG TA TG TG
90316 AC * 13 24/26 AC AC AC AC TC AC GC AC AC AC AC AC AC
101997 TG * 12 22/24 TG TG TG TG TG TG TA TG TG TG TG CG
113456 AT * 12 22/24 AT AT AT AT AT AT AT GT AT AT GT AT
128070 TA * 12 22/24 TA TA TA TA TA TA TA TA TA TA TA CT
137011 AT * 11 20/22 AT GT AT AT AT AG AT AT AT AT AT
138195 GT * 13 24/26 GT GA GT CT GT GT GT GT GT GT GT GT GT
138399 TG * 12 22/24 TG TG AG TG TG TG TG TA TG TG TG TG
139835 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AG TC
145767 CA * 13 24/26 CA CA CA CA TA CA CA CA CA CA CA CG CA
148945 AT * 17 31/34 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AG AG
165967 CA * 11 20/22 CA AA CA CA CA CA CA GA CA CA CA
166282 CA * 10 18/20 CA CA CA CA CT CA CT CA CA CA
166421 TG * 12 22/24 TG TG TG TG CG TG TT TG TG TG TG TG
169565 AT * 12 22/24 AT AT AT AT AT AT AT AT TT GT AT AT
172892 GT * 11 20/22 GT AT CT GT GT GT GT GT GT GT GT
178161 AC * 14 26/28 AC AC AC AC AC AC AC TC AC AC AC AC AC AA
184462 TG * 10 18/20 TG CA TG TG TG TG TG TG TG TG
187116 TA * 10 18/20 TA TG TA CA TA TA TA TA TA TA
188275 CT * 31 57/62 CT CT CT CT AT CT CT CT CT CT CT CT CT CT CT CT CT CT CT GT CT CT CT CT CT CT GT CT TT CT GT
188592 TG * 13 25/26 TG TG TG TG TG TG TG TG TG TG TG TG TA
194885 TG * 16 29/32 TG TG TG TA TG TG TG TG TG TG TG TG TG TT TG TT
-----------------------------------------------------------------------------------------
Total sequence length......................... 198310
Total number of repeats detected.............. 29
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 3 0 0 4 6 7 2 0 0 0 0
15 to 19 1 0 0 0 0 0 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 1 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 3 0 0 4 6 8 2 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 3 TA = 8
0 AG + 0 GA + 1 CT + 0 TC = 1
2 GT + 8 TG + 6 CA + 4 AC = 20
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301528|gb|AE003759.1|AE003759 Drosophila melanogaster genomic scaffold 142000013386035 section 84 of 105, complete sequence
Position Repeat Coverage Repeat
37616 AG * 15 27/30 AG AG AG AG AG AA AG AG AG AG AG AG AG AG CT
53257 TA * 10 18/20 TA TA TA TA TA CA TA TA TA AA
56414 TC * 11 20/22 TC TC TC TC TC TC TC TC TC TA TT
71263 CT * 11 21/22 CT CT CT CT CT CT CT CT CT CT TT
127822 AT * 16 30/32 AT AT AC CT AT AT AT AT AT AT AT AT AT AT AT AT
182832 TG * 11 21/22 TG TG TG TG TA TG TG TG TG TG TG
193850 TG * 11 20/22 TG TG TG TG TG TG AG TG AG TG TG
202975 CA * 14 26/28 CA CA CA AA CA CA CA CA CA CA CA CA CA CT
210806 GT * 15 27/30 GT GT GT GT GT GT GT GT GT GT GT GT CC GT GC
-----------------------------------------------------------------------------------------
Total sequence length......................... 226471
Total number of repeats detected.............. 9
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 1 0 0 0 1 2 0 1 1 0 0
15 to 19 1 0 1 0 0 0 0 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 1 1 0 0 1 2 1 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 1 TA = 2
1 AG + 0 GA + 1 CT + 1 TC = 3
1 GT + 2 TG + 1 CA + 0 AC = 4
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301501|gb|AE003758.1|AE003758 Drosophila melanogaster genomic scaffold 142000013386035 section 83 of 105, complete sequence
Position Repeat Coverage Repeat
2193 AC * 15 27/30 AC AC AC AC AC AC AC AC AC AC AC AC GC GC TC
8602 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA CA AG
15616 CA * 18 34/36 CA CG CA GA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
25370 CA * 11 20/22 CA CA CA CA GA CT CA CA CA CA CA
27069 GT * 12 22/24 GT GT GT GT GT TT GT AT GT GT GT GT
31260 AT * 14 26/28 AT TT AT AT AT AT AT AT AT GT AT AT AT AT
32328 AC * 12 22/24 AC AC AC AC AC AC AC TC GC AC AC AC
41809 CA * 10 18/20 CA CA CA CA CA CG CA CG CA CA
46549 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TG TG TG TA CG TT
47085 GT * 12 22/24 GT GT GT GT GT GT GT GT GT AT GG GT
69294 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA TG CA
113117 AT * 11 20/22 AT AT AT AC AT AT AT AT AT AT TT
116547 TG * 11 20/22 TG TG TG TG TG TG TG TC TG TG TA
145980 TG * 10 18/20 TG TG TG TG TG TG TG TG GG GG
174783 AT * 10 18/20 AT AT AT AT GT AT GT AT AT AT
176285 CA * 10 18/20 CA CA CA CA CA CA CA CA GG CA
220650 AT * 10 18/20 AT AT AT AT AT AA AT AC AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 225036
Total number of repeats detected.............. 17
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 0 0 0 1 5 2 2 0 0 0 0
15 to 19 0 0 0 0 1 1 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 0 0 0 2 6 3 2 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 0 TA = 4
0 AG + 0 GA + 0 CT + 0 TC = 0
2 GT + 3 TG + 6 CA + 2 AC = 13
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301475|gb|AE003757.1|AE003757 Drosophila melanogaster genomic scaffold 142000013386035 section 82 of 105, complete sequence
Position Repeat Coverage Repeat
3194 TA * 10 18/20 TA TA TA TA TA TA TA TA CC TA
6814 CA * 10 18/20 CA CA CA CA CA GA AA CA CA CA
9287 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AT AC AC TC
17512 GA * 10 18/20 GA GA GA GA GA GA AA GA GA CA
45859 TG * 12 22/24 TG TG TG TG CG TC TG TG TG TG TG TG
57214 GT * 13 24/26 GT TT GT GT GT AT GT GT GT GT GT GT GT
68600 GT * 10 18/20 GT GT GT GT GT AT GT GT GT GC
74108 AC * 10 18/20 AC AC AA AC AC AC AC TC AC AC
85916 GA * 10 18/20 GA GA GA GA GA GA AA GA GC GA
90577 AC * 10 18/20 AC AC AA AC GC AC AC AC AC AC
101903 TA * 10 18/20 TA TA TA TA TA TA TA TA TT TT
124320 TA * 11 20/22 TA TA TA TA CA TA TA TG TA TA TA
134980 AC * 12 23/24 AC AC AC AC AC AC AC AC AC AC AC GC
148213 TG * 13 25/26 TG AG TG TG TG TG TG TG TG TG TG TG TG
157642 AC * 12 22/24 AC AC AC AC AC AT AC AC AT AC AC AC
164649 CA * 11 20/22 CA GA CA CA CA AA CA CA CA CA CA
164786 TG * 11 20/22 TG TG TG TG TG TG TG TG TG AC TG
168198 CA * 12 22/24 CA AA CA CA CA CA TA CA CA CA CA CA
170885 GT * 15 27/30 GT GT GT GC GT GT GT GT GT GT GT GT GT AT AT
179662 TG * 17 31/34 TG TG TG TG CG TG TG TG TG TG TG TG TG TG TG TA TA
185491 CA * 10 18/20 CA CA CA CA CA TA CA CA CA GA
188429 TG * 10 18/20 TG TG TG TG TA TC TG TG TG TG
188562 AC * 10 18/20 AC AC AC AC AC AC AC AG AG AC
-----------------------------------------------------------------------------------------
Total sequence length......................... 191851
Total number of repeats detected.............. 23
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 3 0 2 6 4 4 2 0 0 0 0
15 to 19 0 0 0 0 0 0 1 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 3 0 2 6 4 5 3 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 3 TA = 3
0 AG + 2 GA + 0 CT + 0 TC = 2
3 GT + 5 TG + 4 CA + 6 AC = 18
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301458|gb|AE003756.1|AE003756 Drosophila melanogaster genomic scaffold 142000013386035 section 81 of 105, complete sequence
Position Repeat Coverage Repeat
35050 AT * 10 18/20 AT AT AT AT AA AT AT AT AT AA
35590 AT * 11 20/22 AT AT AT AA AT AT AT AT AT AT TT
49278 AG * 10 18/20 AG AA AG AG AG AG AG AA AG AG
60738 GT * 11 20/22 GT GT AA GT GT GT GT GT GT GT GT
79357 AT * 13 24/26 AT AT AT AT AT AC GT AT AT AT AT AT AT
88076 TG * 12 22/24 TG TG TG TG TG TG AA TG TG TG TG TG
92723 AT * 12 22/24 AT AT AT AT AT AT AT AT GT AT AT AC
97594 TG * 13 24/26 TG CT TG TG TG TG TG TG TG TG TG TG TG
103846 CA * 10 18/20 CA AC CA CA CA CA CA CA CA CA
122141 GT * 11 20/22 GT GA GT GT GT GT AT GT GT GT GT
122830 AT * 11 20/22 AT AT AT AT AT GT AT GT AT AT AT
132691 GT * 12 23/24 GT GT GT GT GT GT GT GT GT GT GT GG
148852 TG * 13 24/26 TG CG TG TG TG TG TG TG TG CG TG TG TG
154441 CA * 12 22/24 CA CA CA CA CA CA CA CA CC GA CA CA
157063 CA * 11 20/22 CA CA CA CA CA CA CA TA GA CA CA
157788 CA * 10 18/20 CA CA CA CA CG CG CA CA CA CA
172465 AT * 10 18/20 AT AT AT AT AT AA AT AC AT AT
190986 CA * 11 20/22 CA CA CA CA CT CA CA CC CA CA CA
193324 CA * 10 18/20 CA CA CA AA CA CA CA CA CA CG
195492 CA * 10 18/20 CA CC CA CA CG CA CA CA CA CA
197337 GT * 11 20/22 GT GT GT GT GT GT GC GT GC GT GT
213183 TG * 11 20/22 TG TG AG TG TG TC TG TG TG TG TG
232204 AT * 10 18/20 AT AT AC AT AT GT AT AT AT AT
242316 TA * 11 20/22 TA CA TA TA TA TA TG TA TA TA TA
248658 CA * 13 25/26 CA CA CA CA TA CA CA CA CA CA CA CA CA
250857 CA * 11 20/22 CA CT CA CC CA CA CA CA CA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 256242
Total number of repeats detected.............. 26
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 7 1 1 0 0 9 4 4 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 7 1 1 0 0 9 4 4 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
7 AT + 1 TA = 8
1 AG + 0 GA + 0 CT + 0 TC = 1
4 GT + 4 TG + 9 CA + 0 AC = 17
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301445|gb|AE003755.1|AE003755 Drosophila melanogaster genomic scaffold 142000013386035 section 80 of 105, complete sequence
Position Repeat Coverage Repeat
69719 GT * 11 20/22 GT GA GC GT GT GT GT GT GT GT GT
99705 CA * 10 18/20 CA CA CA CA CA CT CA CA CA CG
126273 AT * 10 18/20 AT GT AT AT AT AT AT AT AT AA
152255 AC * 11 20/22 AC AA AC AC AC GC AC AC AC AC AC
163810 TG * 10 18/20 TG TG CG TG AG TG TG TG TG TG
173050 AT * 10 18/20 AT TT AT AT AT AT AC AT AT AT
176713 CA * 10 18/20 CA CA CA CA CA CA CG CA CA CT
180656 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AC AC TT
-----------------------------------------------------------------------------------------
Total sequence length......................... 226763
Total number of repeats detected.............. 8
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 0 0 0 2 2 1 1 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 0 0 0 2 2 1 1 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 0 TA = 2
0 AG + 0 GA + 0 CT + 0 TC = 0
1 GT + 1 TG + 2 CA + 2 AC = 6
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301396|gb|AE003754.1|AE003754 Drosophila melanogaster genomic scaffold 142000013386035 section 79 of 105, complete sequence
Position Repeat Coverage Repeat
756 TG * 12 22/24 TG TG CG TG TG TT TG TG TG TG TG TG
1000 TG * 10 18/20 TG TG TG GG TG TG TG TG TC TG
1030 TG * 10 18/20 TG TG TG AG TG GG TG TG TG TG
5185 TA * 10 18/20 TA TA TA TA CA TA AA TA TA TA
37993 CA * 10 18/20 CA AG CA CA CA CA CA CA CA CA
41357 AT * 10 18/20 AT AC AT AT AT TT AT AT AT AT
51809 AC * 10 18/20 AC GC AC GC AC AC AC AC AC AC
106679 AT * 10 18/20 AT AT TT AT AT AT AT AT GT AT
114644 TG * 11 20/22 TG TA TG TG TG TG TG TG TG TC TG
132781 CA * 10 18/20 CA CA CA CA CA CA AA CA CC CA
154324 GT * 11 20/22 GT GT GA GT GA GT GT GT GT GT GT
161327 TA * 16 29/32 TA TA TA TA TA TA TA TA TA TA TA TA AT TA TA AA
166039 TA * 12 22/24 TA TA TA TA TA TG TA TA TA CA TA TA
175935 TG * 12 22/24 TG GG TG TG TG TG TG TG TG TG TG TA
195581 AT * 12 22/24 AT AT AT AT AT AT AT AT AT AT AT CC
216787 CA * 10 18/20 CA TA CA CA CA CA CA CA CC CA
219019 TG * 18 33/36 TG TG TG TG TG TG TG TG TG TG TG CG TG TG AG TG AG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 221822
Total number of repeats detected.............. 17
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 2 0 0 1 3 5 1 0 0 0 0
15 to 19 0 1 0 0 0 0 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 3 0 0 1 3 6 1 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 3 TA = 6
0 AG + 0 GA + 0 CT + 0 TC = 0
1 GT + 6 TG + 3 CA + 1 AC = 11
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301360|gb|AE003753.1|AE003753 Drosophila melanogaster genomic scaffold 142000013386035 section 78 of 105, complete sequence
Position Repeat Coverage Repeat
33596 AC * 10 18/20 AC AC AC AC AC AC AC AT AC AA
34360 CA * 11 20/22 CA CA CA CA CA CA CA CA CA AA TA
37988 TG * 10 18/20 TG CG TG TG TG TG TG TT TG TG
49529 TG * 12 23/24 TG TG TG TG TG TG TG TG TG TG CG TG
62318 AC * 13 24/26 AC AC AC AC GC TC AC AC AC AC AC AC AC
62695 GT * 16 30/32 GT GT TT GT TT GT GT GT GT GT GT GT GT GT GT GT
88432 TA * 21 38/42 TA TA AA CA TA TA TA TA TA TA TA TA TA TA TA TA CA TA TA TA TG
91140 TA * 11 20/22 TA TA TA TA TA TA TA TT TA TA TG
102076 TG * 10 18/20 TG TG TG TG TG TG TT TG TC TG
107601 TG * 11 20/22 TG TG TA TG TG TG TG CG TG TG TG
121419 CT * 23 42/46 CT CT CT CT AA CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT GA
123585 TG * 11 20/22 TG CG AG TG TG TG TG TG TG TG TG
130501 TG * 11 20/22 TG TG TG TG TG TG TG TG TA TT TG
136116 TG * 10 18/20 TG TG TA TG TG TG TG TG TG CG
136358 CA * 10 18/20 CA CA CA CA CA CA CA CA CA GG
156602 GT * 13 24/26 GT GG GT GT GT GT GT GT GT GT GT GT GG
160941 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CA AC
172206 AT * 10 18/20 AT AT AT AT AT AA AT AC AT AT
181359 TA * 10 18/20 TA GA TA TA TA TA TA TA TA TG
195608 CA * 11 20/22 CA CC CA CA CA CA CA CA CA CG CA
218580 TG * 10 18/20 TG TC TG TG TG TG TG TG TG TC
-----------------------------------------------------------------------------------------
Total sequence length......................... 226342
Total number of repeats detected.............. 21
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 2 0 0 2 4 8 1 0 0 0 0
15 to 19 0 0 0 0 0 0 0 1 0 0 0 0
20 to 24 0 1 0 0 0 0 0 0 0 1 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 3 0 0 2 4 8 2 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 3 TA = 4
0 AG + 0 GA + 1 CT + 0 TC = 1
2 GT + 8 TG + 4 CA + 2 AC = 16
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301339|gb|AE003752.1|AE003752 Drosophila melanogaster genomic scaffold 142000013386035 section 77 of 105, complete sequence
Position Repeat Coverage Repeat
7329 TA * 12 23/24 TA TA TA TA TA TA TA TG TA TA TA TA
20977 AC * 10 18/20 AC AC AC AC AC CC AC AC CC AC
32127 AC * 11 20/22 AC AA AC AC AC AC AC AC AC AC AT
32307 CT * 10 18/20 CT CT CT CT CT CT CT TA CT CT
36909 CA * 10 18/20 CA CA CA CA CC CG CA CA CA CA
36980 GA * 10 18/20 GA GA GA GA AA GA GA CA GA GA
64106 GT * 15 27/30 GT GT GT GT GT GT GT GT GT GT GT GT GG GC TT
72813 TG * 10 18/20 TG TG TA TG TG TG TG TG TG CG
82679 GT * 10 18/20 GT GT GT GT GA GT GT GT GT AT
83090 GT * 10 18/20 GT GT TA GT GT GT GT GT GT GT
90886 TA * 11 20/22 TA TA TA TA TA TA TT TA TA TA GA
91266 GT * 12 22/24 GT GT GT AT GT GT GT GT GT GT GT TT
103557 AC * 10 18/20 AC AC AC AC AC AC AC AC AC CA
104843 TA * 12 23/24 TA TA TA TA TA TA TA TA TA TA TA TG
105552 AT * 10 18/20 AT GT AT AT AT AT AT AA AT AT
119434 CA * 10 18/20 CA CA CA CA CA TG CA CA CA CA
131525 GT * 11 20/22 GT GA GA GT GT GT GT GT GT GT GT
137181 AC * 14 26/28 AC AC AC AC AC AC AC AC AC AC TC AC AT AC
141484 CA * 13 24/26 CA CA CA CA CT CA CA CA CA CA CA CA AA
151177 CT * 10 18/20 CT CT CT CT CT CT TT TT CT CT
167703 AT * 10 18/20 AT AT AT AC AT AT AC AT AT AT
169777 AT * 10 18/20 AT AT AT AA AT AT AT AT AT TT
170574 TA * 10 18/20 TA TA TA TA TA CA CA TA TA TA
171974 AT * 10 18/20 AT AT AT AT AC AT AC AT AT AT
172044 AT * 13 24/26 AT AT AA AT AT AT AT AC AT AT AT AT AT
172584 TA * 10 18/20 TA AT TA TA TA TA TA TA TA TA
176020 CT * 10 18/20 CT CT CT AT AT CT CT CT CT CT
215086 GT * 11 20/22 GT GA GT GT GT GT AT GT GT GT GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 225478
Total number of repeats detected.............. 28
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 5 0 1 4 3 1 5 0 3 0 0
15 to 19 0 0 0 0 0 0 0 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 5 0 1 4 3 1 6 0 3 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 5 TA = 10
0 AG + 1 GA + 3 CT + 0 TC = 4
6 GT + 1 TG + 3 CA + 4 AC = 14
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301280|gb|AE003751.1|AE003751 Drosophila melanogaster genomic scaffold 142000013386035 section 76 of 105, complete sequence
Position Repeat Coverage Repeat
1045 CA * 13 24/26 CA AA CT CA CA CA CA CA CA CA CA CA CA
1077 CA * 10 18/20 CA CA CA CA CA CT CA CT CA CA
2210 AC * 12 22/24 AC AC AC AC AC AC AC GA AC AC AC AC
3098 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG CG TG GG
3249 TG * 12 22/24 TG TG AA TG TG TG TG TG TG TG TG TG
9026 AC * 10 18/20 AC AC AC AA AC AC AC AC AC AA
13908 TG * 11 21/22 TG TG TG TG TG TG GG TG TG TG TG
14262 TG * 10 19/20 TG TG TG TG TG TG TG TG TG TC
15849 AC * 11 20/22 AC AC AC AC CG AC AC AC AC AC AC
16204 CA * 11 20/22 CA CA CA CA CA CA CA CT CA CA AA
17996 CT * 15 27/30 CT CT CT CC CT CT CT CT CT CT CT CT CT CT TA
18767 GT * 11 20/22 GT GT GT GT GT GT GT GT GT GG GA
19031 GA * 10 18/20 GA GA GA GG GA GC GA GA GA GA
21048 AC * 10 18/20 AC AC AC AC AC AC TA AC AC AC
21444 CA * 13 24/26 CA CA CA CA CA CA CA CA TA CA CA CT CA
21634 CA * 12 22/24 CA CA CA CA CT CA CT CA CA CA CA CA
22859 AT * 18 33/36 AT AT AT AT AT AT AT AT AG AT AT AT AT GT AT AT AT AC
184197 TG * 11 20/22 TG TG TG TG TG TG TG TG CG TT TG
185873 TG * 12 22/24 TG TT TG TG TG AG TG TG TG TG TG TG
203973 TG * 10 18/20 TG TG TG TG TA TG TG TG TG TT
204452 CA * 10 18/20 CA CA CA CA CA CA CA CA CA TG
209550 AC * 10 18/20 AC AC AC AC AC AC AC TC AC GC
212637 GA * 11 20/22 GA GA GC GG GA GA GA GA GA GA GA
212750 CA * 11 20/22 CA TA CA AA CA CA CA CA CA CA CA
217230 TA * 11 20/22 TA CA AA TA TA TA TA TA TA TA TA
222472 TC * 11 20/22 TC TG TC TG TC TC TC TC TC TC TC
228418 AT * 10 18/20 AT GT AC AT AT AT AT AT AT AT
239099 AT * 25 45/50 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT AT AT AT NN NN
247452 CA * 12 22/24 CA CA CA CA CA CA CT CA CA CT CA CA
256531 GT * 12 22/24 GT GT GT GT GT GT AT GT GT GT TT GT
257677 CA * 12 23/24 CA CA CA CA CA CA CA CA CA CA CA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 269518
Total number of repeats detected.............. 31
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 1 0 2 5 9 7 2 1 0 0 0
15 to 19 1 0 0 0 0 0 0 0 0 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 1 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 1 0 2 5 9 7 2 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 1 TA = 4
0 AG + 2 GA + 1 CT + 1 TC = 4
2 GT + 7 TG + 9 CA + 5 AC = 23
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301241|gb|AE003750.1|AE003750 Drosophila melanogaster genomic scaffold 142000013386035 section 75 of 105, complete sequence
Position Repeat Coverage Repeat
34070 AC * 10 18/20 AC AC AA AC AC AC AC AG AC AC
38225 AT * 10 18/20 AT AT AT AT AT AT AT GT AT AA
38251 AT * 11 20/22 AT AT AT AT AT AC AT AT AT AG AT
52590 AT * 10 18/20 AT AT AT AT AT AT AC AT AT AG
119654 AT * 10 19/20 AT AT AT AT AT AC AT AT AT AT
192634 AT * 11 21/22 AT AT AT AT AT AT AT GT AT AT AT
193273 GT * 11 20/22 GT GT AT GT GA GT GT GT GT GT GT
199159 CA * 11 20/22 CA CA TA CA CA CA CA CA CA CG CA
199388 GA * 11 20/22 GA GA GA GA GA GA GA GA GA AA GG
209260 CA * 11 20/22 CA CA CA CA CA CA CA TA CA CA CT
212730 TG * 21 38/42 TG TG TG TG TG CG TG TT TG TG TG TG TG TG TG TG TG TG CG TG TT
214556 GT * 12 22/24 GT GA AT GT GT GT GT GT GT GT GT GT
215223 CA * 11 20/22 CA CA CA CA TA CA CA CA CA CA GA
218847 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG GC
225689 TG * 10 18/20 TG TG TG TG TG TG CG TA TG TG
226805 AC * 11 21/22 AC AC AC AC AC AC AC AC AC AC GC
-----------------------------------------------------------------------------------------
Total sequence length......................... 227398
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 0 0 1 2 3 2 2 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 1 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 0 0 1 2 3 3 2 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 0 TA = 5
0 AG + 1 GA + 0 CT + 0 TC = 1
2 GT + 3 TG + 3 CA + 2 AC = 10
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301193|gb|AE003749.1|AE003749 Drosophila melanogaster genomic scaffold 142000013386035 section 74 of 105, complete sequence
Position Repeat Coverage Repeat
127 AC * 10 18/20 AC TC AC AC AC AC AC AC AC AA
150 CA * 12 22/24 CA CA TT CA CA CA CA CA CA CA CA CA
11598 CA * 10 18/20 CA CA CC CA CA CA CA CA CA TA
22682 CA * 16 29/32 CA CG CT CA CA CA CA CA CA CA CA CA CA CA CG CA
26982 CA * 11 20/22 CA CA CG CA CA CA CA CA CA CC CA
30019 TA * 10 18/20 TA TA TA TG TA TA TA TA TA TT
34325 CA * 10 18/20 CA CA CG CA CA CA TA CA CA CA
57846 TC * 11 20/22 TC AC TC TC TC TC TC TC TC TG TC
67442 CA * 15 28/30 CA CA CA CA CA CA CA CA CA CA AA CA CA CA CG
76888 AT * 10 18/20 AT CT AT AT AT AT AT AT AT CT
165933 CA * 13 24/26 CA CA CG CA CA CG CA CA CA CA CA CA CA
225039 AT * 14 26/28 AT TT AT AT AT AT AT AT AT AT AT AA AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 228472
Total number of repeats detected.............. 12
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 1 0 0 1 5 0 0 1 0 0 0
15 to 19 0 0 0 0 0 2 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 1 0 0 1 7 0 0 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 1 TA = 3
0 AG + 0 GA + 0 CT + 1 TC = 1
0 GT + 0 TG + 7 CA + 1 AC = 8
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301169|gb|AE003748.1|AE003748 Drosophila melanogaster genomic scaffold 142000013386035 section 73 of 105, complete sequence
Position Repeat Coverage Repeat
255 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG CT
721 TG * 12 23/24 TG TG TG TG TG TG TG TG TG TG CG TG
1785 AT * 15 27/30 AT AC AT AT AT AT AT AT AT AT AT AT AT AC AC
6905 GT * 11 20/22 GT GC GT GT GT GT GT GT GT GG GT
7616 TG * 11 20/22 TG GG TG TG TG TG TG TG TG TG TT
9984 TG * 10 18/20 TG TG TG GG TG TG TG GG TG TG
11255 CT * 18 33/36 CT CT CT CT CG CT CT CT CG CT CT CT CT CT CT CC CT CT
13579 TG * 11 20/22 TG AG TG TG TA TG TG TG TG TG TG
13955 TG * 11 20/22 TG TG TG TG TG TG TG TG TG AG TA
17300 AC * 14 26/28 AC AA AC AC AC AC AC AC AC AC AC AA AC AC
24006 CA * 10 18/20 CA CA CA CA CA CA CA TA CA AA
24028 CA * 18 33/36 CA CA CA CA TA CA CA CT CA CA CA CA CA CA CA CA CA CC
27977 CA * 16 30/32 CA CA CA CA CA CC TA CA CA CA CA CA CA CA CA CA
31195 TG * 10 18/20 TG TG TG TG TG TG TG TG TG GC
40742 CA * 11 20/22 CA CT CA CA CA CA CA CA CA CA CC
41595 AC * 10 19/20 AC AC AC AC AC AC AC AC CC AC
42267 CA * 13 24/26 CA CT CA CA CA CA CA CA CA CA CA CA CC
45563 AC * 16 29/32 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AT TG
45773 TG * 10 18/20 TG TG TA AG TG TG TG TG TG TG
47560 CA * 10 19/20 CA CG CA CA CA CA CA CA CA CA
59130 GT * 11 21/22 GT GT GT GT GT GT GT GT GT GT TT
67267 AC * 17 31/34 AC CC AC AC AC TC AC AC AC AC AC AC AC AC AT AC AC
104199 AT * 14 26/28 AT AT AG AT AT AT AT AT AT AT GT AT AT AT
123100 AT * 11 21/22 AT AT AT AT AT AT AG AT AT AT AT
135882 GT * 10 18/20 GT GT GT GC GT GC GT GT GT GT
136836 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA CT CC
143105 TG * 10 18/20 TG TG TG TG TG TC TG TA TG TG
143129 TG * 10 18/20 TG TA TG TG TG TT TG TG TG TG
146988 TA * 10 18/20 TA AA TG TA TA TA TA TA TA TA
160497 AT * 10 18/20 AT CT AT CT AT AT AT AT AT AT
197697 AG * 13 25/26 AG AG AA AG AG AG AG AG AG AG AG AG AG
209426 AC * 10 18/20 AC AC AC AC GG AC AC AC AC AC
209999 GT * 10 18/20 GT GT GC GA GT GT GT GT GT GT
213893 AC * 10 18/20 AC AC AC AC GC AC AC AC AC AA
221712 AC * 12 22/24 AC AC AC AC AC AC AC AC AA AC AC TC
230491 TA * 11 20/22 TA TA TA TA TA TC TA TA TA CA TA
231215 CA * 10 19/20 CA CA CA CA CA CA CA CA CA GA
233387 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC AT AC AT
239408 CA * 30 54/60 CA CA CA CC CA CA CA CA TA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CC GA TA CA TA
241145 AC * 10 18/20 AC AC AT AC AC AC AC AC TC AC
245824 CT * 18 34/36 CT CT AC CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
245862 CT * 10 18/20 CT CT CT CT CT CT AT CT AT CT
249723 TA * 12 22/24 TA CA TA TA TA TA TA TA TA TT TA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 256636
Total number of repeats detected.............. 43
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 3 1 0 7 6 10 4 0 1 0 0
15 to 19 1 0 0 0 2 2 0 0 0 2 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 1 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 3 1 0 9 9 10 4 0 3 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 3 TA = 7
1 AG + 0 GA + 3 CT + 0 TC = 4
4 GT + 10 TG + 9 CA + 9 AC = 32
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301134|gb|AE003747.1|AE003747 Drosophila melanogaster genomic scaffold 142000013386035 section 72 of 105, complete sequence
Position Repeat Coverage Repeat
3668 AT * 10 18/20 AT AT AT AT AT AT AT AT AT TC
11401 AG * 13 24/26 AG AG AG AG AG AG AG AG AG AG AA AA AG
46011 TG * 11 20/22 TG TG TG TG TG TG TG TT GG TG TG
51379 AT * 15 27/30 AT AT AT AT TT AT AT AT AT AT AT AA AT AT CT
131305 AC * 10 18/20 AC AC AC AC AC AC AC AG AT AC
139428 TG * 15 27/30 TG TG TG TG TG TG TG CG TG TG TG GG TG TG CG
146062 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TA TT
146780 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT TT GG
147566 TG * 13 24/26 TG TG TG TG TG TG TG TG TT TG GG TG TG
147596 TG * 11 20/22 TG TG TG TG TG TG TG TG TA TG TC
147854 AT * 10 18/20 AT AT AT AT AT AT GT GT AT AT
148247 GT * 10 18/20 GT GC GT GT GT TT GT GT GT GT
149842 GT * 11 20/22 GT GT GC TT GT GT GT GT GT GT GT
158818 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA CA GG
160238 TG * 12 22/24 TG TG TG TG TG TG TA TG TG TG TG TC
163985 AT * 13 24/26 AT AT AT AT AT GT AT AT AT AT AT TT AT
169564 TG * 10 19/20 TG TG TG TG TG TA TG TG TG TG
172991 TG * 12 22/24 TG CC TG TG TG TG TG TG TG TG TG TG
176023 TG * 11 20/22 TG TG TG TG TG TG TT GG TG TG TG
184696 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AC AC CA
185223 AT * 12 22/24 AT AT AT AT AT AA AT AT AT AT GT AT
194819 CA * 16 30/32 CA CA CA CA CA CA CA CA CC CA AA CA CA CA CA CA
197672 GT * 13 24/26 GT GG GA GT GT GT GT GT GT GT GT GT GT
199360 CA * 12 22/24 CA CA CA CA CA CG CA CA CA CA TA CA
199592 AG * 11 20/22 AG AG AA AG AG AG AG AG AG AG AA
201763 CA * 10 18/20 CA CA AG CA CA CA CA CA CA CA
204004 AT * 13 24/26 AT TT AT AT AT AT AT AT AT AT AT GT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 204469
Total number of repeats detected.............. 27
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 0 2 0 2 3 8 4 0 0 0 0
15 to 19 1 0 0 0 0 1 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 6 0 2 0 2 4 9 4 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
6 AT + 0 TA = 6
2 AG + 0 GA + 0 CT + 0 TC = 2
4 GT + 9 TG + 4 CA + 2 AC = 19
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301086|gb|AE003746.1|AE003746 Drosophila melanogaster genomic scaffold 142000013386035 section 71 of 105, complete sequence
Position Repeat Coverage Repeat
2453 CA * 10 18/20 CA CA CA CA CA CA CA CA CA TT
5149 TG * 10 19/20 TG TG TG TG TG TG TG TG TT TG
24467 AC * 10 18/20 AC AC GC AC AC AC AC AC AC GC
42711 GT * 10 18/20 GT GT TT GT GT GT GT GT AT GT
46773 AT * 10 18/20 AT AT AT AT AT AT TT AT TT AT
48822 TA * 10 18/20 TA TA TA AC TA TA TA TA TA TA
55900 AT * 11 20/22 AT CT AT AT AT AT AT AC AT AT AT
56889 AC * 26 48/52 AC AC AC TC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AT AC AC TT AC AC
57280 AT * 22 40/44 AT TA AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GC
58964 CA * 10 18/20 CA CA CA CA CA CA CA CA TG CA
59860 TG * 10 19/20 TG CG TG TG TG TG TG TG TG TG
62861 AC * 15 28/30 AC AC AC AC AC AC AC AC AC AC AC AC AC CC GC
68314 CA * 10 18/20 CA CA CA CA CA CA CC CA CT CA
79765 TA * 10 18/20 TA TA TT TG TA TA TA TA TA TA
82315 CA * 10 18/20 CA CA CG CA CA CA CA TA CA CA
85819 TG * 11 21/22 TG TG TG TG TG TG TG TG TG TG GG
91232 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT GA GC
91352 AT * 31 56/62 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AC AT AT AT AT GC TA
118066 GT * 10 18/20 GT GC GT TT GT GT GT GT GT GT
195855 TC * 18 33/36 TC TC TC TC TC TC TC TT TC TC TT TC TC TC TC TG TC TC
208385 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GC GT GC
225614 AC * 10 18/20 AC AC AC AC AC AC AC AC AT AT
225664 AC * 11 20/22 AC AC AC AC AC AA AC CC AC AC AC
-----------------------------------------------------------------------------------------
Total sequence length......................... 226318
Total number of repeats detected.............. 23
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 2 0 0 3 4 3 4 0 0 0 0
15 to 19 0 0 0 0 1 0 0 0 1 0 0 0
20 to 24 1 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 1 0 0 0 0 0 0 0
30 to 34 1 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 2 0 0 5 4 3 4 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 2 TA = 6
0 AG + 0 GA + 0 CT + 1 TC = 1
4 GT + 3 TG + 4 CA + 5 AC = 16
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301057|gb|AE003745.1|AE003745 Drosophila melanogaster genomic scaffold 142000013386035 section 70 of 105, complete sequence
Position Repeat Coverage Repeat
23123 CA * 12 22/24 CA CA CA CA TA CA CA CA CA CA CA GA
41991 TG * 13 25/26 TG TG TG TG TG TG TG TG TG TG TG TG TA
46837 AT * 22 40/44 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TC GT AT AT GT
65479 CA * 10 18/20 CA CA CA CA TA CA CA CG CA CA
74097 TA * 12 22/24 TA TA TA TA TA TA CA TA TA TA TA CA
78851 AC * 10 18/20 AC AC AC AC AC AT CC AC AC AC
99899 AC * 12 22/24 AC AC AA AC AA AC AC AC AC AC AC AC
102775 TA * 11 20/22 TA TA TA TA TA TA TA TA TA TT TG
107645 CA * 10 18/20 CA CA CA CA CA CA CA CG TA CA
109160 TA * 10 18/20 TA GA TA TA TA TA GA TA TA TA
118889 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA GG CA CA
136522 GT * 10 18/20 GT GT GG CT GT GT GT GT GT GT
144949 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TG GC
157934 TA * 12 22/24 TA TA TA TA TA TA TA TA TA TG TT TA
160177 AT * 11 20/22 AT AT AT AT AT AT AC AT AC AT AT
161812 CT * 10 18/20 CT TT CT CT CT CT CT CT CT CG
167167 CA * 12 22/24 CA CA CA CA CG GA CA CA CA CA CA CA
181654 TA * 11 20/22 TA AA TA CA TA TA TA TA TA TA TA
202413 AT * 10 18/20 AT AT AT GT AC AT AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 219341
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 5 0 0 2 5 2 1 0 1 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 1 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 5 0 0 2 5 2 1 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 5 TA = 8
0 AG + 0 GA + 1 CT + 0 TC = 1
1 GT + 2 TG + 5 CA + 2 AC = 10
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7301010|gb|AE003744.1|AE003744 Drosophila melanogaster genomic scaffold 142000013386035 section 69 of 105, complete sequence
Position Repeat Coverage Repeat
4609 TG * 15 27/30 TG TG TG TG TG TG TG TG CG AG TG TG TG TG TT
4698 TG * 10 18/20 TG TG TG TG TG TA TG TG TG CG
34991 CA * 12 22/24 CA TA CA CA TA CA CA CA CA CA CA CA
42800 AT * 12 22/24 AT AT AT AT AT AT AT AC AT AT AT AC
46217 TA * 10 18/20 TA CA TA TA TA TA TA TA TA TC
48819 GT * 11 21/22 GT AT GT GT GT GT GT GT GT GT GT
59202 AC * 13 24/26 AC AC GC AC AC AC AC AC AC AC AC AC AT
104626 CA * 10 18/20 CA CA CA CA CA CG CA CA CA CG
112530 AT * 11 20/22 AT AT AT AT AT AT AT AT AC AT AC
112555 TA * 10 18/20 TA TA TA TA TA TA TA TA TA GG
118718 TA * 12 22/24 TA CA TA TA TA TA TA TA TA TA TA CA
158145 AG * 13 24/26 AG AG AC AG AA AG AG AG AG AG AG AG AG
161642 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GC TT GT
169905 AT * 10 18/20 AT AT AT AT AT AT AT GG AT AT
217846 CT * 11 20/22 CT CT CT CT CT AA CT CT CT CT CT
237881 TG * 10 18/20 TG TG TG TG TG TG TG TG TT TT
-----------------------------------------------------------------------------------------
Total sequence length......................... 239327
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 3 1 0 1 2 2 2 0 1 0 0
15 to 19 0 0 0 0 0 0 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 3 1 0 1 2 3 2 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 3 TA = 6
1 AG + 0 GA + 1 CT + 0 TC = 2
2 GT + 3 TG + 2 CA + 1 AC = 8
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7300988|gb|AE003743.1|AE003743 Drosophila melanogaster genomic scaffold 142000013386035 section 68 of 105, complete sequence
Position Repeat Coverage Repeat
35 CT * 11 20/22 CT CT CT CT CT CT CT CT CT TT CG
10123 AT * 13 24/26 AT AA AT AT AT AT AA AT AT AT AT AT AT
17320 TA * 11 20/22 TA CA TA TA TA TA TT TA TA TA TA
27852 AC * 10 18/20 AC AC AC AC AC AC AC AC CC AT
43551 TG * 10 18/20 TG TG TG TG TG TG TG TG TT TT
61625 GT * 10 18/20 GT GT GT GT AT GT AT GT GT GT
61649 TG * 12 23/24 TG TT TG TG TG TG TG TG TG TG TG TG
62976 GT * 12 22/24 GT TT GT GT GT GT GT GT GT GT GT AT
79318 TA * 10 18/20 TA TT CA TA TA TA TA TA TA TA
80037 AT * 11 20/22 AT AT AT AT AT AT AT AT GT AT AG
81460 AC * 10 18/20 AC GC AC AC AC AC AC AC AT AC
103743 AT * 10 18/20 AT AT AT AT CT AT AT CT AT AT
105293 TA * 10 18/20 TA TA TA TA TA TA TA TA TT TT
203619 AC * 13 24/26 AC AT GC AC AC AC AC AC AC AC AC AC AC
215001 CA * 10 18/20 CA CA AA CA CC CA CA CA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 217674
Total number of repeats detected.............. 15
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 3 0 0 3 1 2 2 0 1 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 3 0 0 3 1 2 2 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 3 TA = 6
0 AG + 0 GA + 1 CT + 0 TC = 1
2 GT + 2 TG + 1 CA + 3 AC = 8
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7300960|gb|AE003742.1|AE003742 Drosophila melanogaster genomic scaffold 142000013386035 section 67 of 105, complete sequence
Position Repeat Coverage Repeat
291 GT * 15 27/30 GT GT GT GT AT GT GT GT GT GT GT GT GT GG GG
22219 TA * 10 18/20 TA TA TA TA TA CA TA TA TG TA
22446 CA * 10 18/20 CA CA CA CA CA CA AA CA CA TA
28479 CA * 13 24/26 CA CA CA AA CA CA CA CG CA CA CA CA CA
29053 TA * 11 20/22 TA TA TA TA TA CA TA CA TA TA TA
36325 TA * 11 20/22 TA AA TA TA TA TA TA TA TA TG TA
52981 AT * 10 18/20 AT AT AT AT AT AT AC AT AT AA
79921 TG * 11 20/22 TG AG TG TG TG TG TG TG TG TG CG
87825 GT * 16 29/32 GT GT GT GT TT GT GT GC GT GT GT GT GT GT GT GA
88037 TG * 11 21/22 TG TG TG TG TG TG TG TG TG TG AG
94701 TA * 18 33/36 TA TT TC TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA
98889 AT * 12 22/24 AT AT AT AT AT AT AT AT AT AC AT AG
108235 CA * 13 24/26 CA GA CA CG CA CA CA CA CA CA CA CA CA
112744 AC * 15 27/30 AC AC AG AT AC AC AC AC AC AC AC AC AC AC GC
114300 TA * 10 18/20 TA TG TA AA TA TA TA TA TA TA
115035 TC * 26 47/52 TC TC CC TC CC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TT TC TC TT TC TT
116611 AT * 10 18/20 AT AT AC AT AT AT AG AT AT AT
126320 TA * 17 31/34 TA TA TA TG TA TA TA TG TA TA TA TA TA TA TA TA TT
130309 TG * 11 20/22 TG TG TG TG TG TG TA TG TG TG TT
135599 GA * 12 22/24 GA GA GA GC GA GA GA GA GA GA GA GC
165484 TC * 11 20/22 TC TC TC TC TC CC TC TT TC TC TC
196327 AG * 10 18/20 AG AG AG AG AG AG AG AG AG TA
205367 GT * 12 22/24 GT GA GC GT GT GT GT GT GT GT GT GT
205750 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TG TG CG AG TG AG
219753 CA * 11 21/22 CA CA CA CA CT CA CA CA CA CA CA
224968 TG * 10 18/20 TG CG TG TG TG TG TG TG TG CG
228341 AT * 10 18/20 AT AT AC AT AT AT AT AC AT AT
229255 AT * 10 18/20 AT AT AT AT AT AT AT AG AT CT
231471 CA * 11 20/22 CA CA CA CA CA CA CT CA CG CA CA
233140 GT * 15 27/30 GT GC GT GT AT GT GT GT GT GT GT GT GT GT GC
-----------------------------------------------------------------------------------------
Total sequence length......................... 233673
Total number of repeats detected.............. 30
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 4 1 1 0 5 4 1 1 0 0 0
15 to 19 0 2 0 0 1 0 1 3 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 1 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 6 1 1 1 5 5 4 2 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 6 TA = 11
1 AG + 1 GA + 0 CT + 2 TC = 4
4 GT + 5 TG + 5 CA + 1 AC = 15
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7300931|gb|AE003741.1|AE003741 Drosophila melanogaster genomic scaffold 142000013386035 section 66 of 105, complete sequence
Position Repeat Coverage Repeat
9072 TA * 15 28/30 TA TA TA TA TA TA TA TA TA TA TA TA TA TC AA
19893 AC * 11 21/22 AC AC AC AC AC AC AC AT AC AC AC
19998 TG * 12 22/24 TG TG TA TG TG TG TG TG TG GG TG TG
25464 AC * 13 25/26 AC AC AC AC AC AC AC AC AC AC AC AC GC
26527 TG * 12 22/24 TG TG TT TT TG TG TG TG TG TG TG TG
30640 TG * 10 18/20 TG TG TG TG TG TG TG TG TT CG
41014 CA * 15 27/30 CA CT CG CA CA CA CA CA CA CA CA CA CA CA CT
41800 TG * 13 24/26 TG TG AG TG TG TG TG TG TG TG TG TG GG
61268 TG * 11 20/22 TG TG GG TG TG TG TG TG TG TG TC
71770 CA * 17 31/34 CA CA CA CA CA CA CA CA CA CA CA CG GA CA CA CA CG
83648 CA * 10 18/20 CA AA CA CA CA CA TA CA CA CA
88330 CA * 10 18/20 CA CA CT CA CA CA CC CA CA CA
88373 AG * 10 19/20 AG AG AG AG AG AG AG AG AA AG
92059 TG * 12 22/24 TG TG CG AG TG TG TG TG TG TG TG TG
92173 GT * 11 20/22 GT GC GT GT GT GT GT GT GT AT GT
96926 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG GA TG
101631 AG * 10 18/20 AG AG AG AC AG AG AG AG AG GG
104805 TA * 12 23/24 TA TG TA TA TA TA TA TA TA TA TA TA
112162 GT * 10 19/20 GT GT TT GT GT GT GT GT GT GT
117568 AT * 10 19/20 AT AT AT AT AT AT AT AT AA AT
123383 CA * 11 20/22 CA CA CA CA CA CA CA CA CA TA AA
124616 AC * 10 18/20 AC GC TC AC AC AC AC AC AC AC
124744 TC * 12 22/24 TC GC TC TC TC TG TC TC TC TC TC TC
125356 CA * 10 18/20 CA GA CA CA CA CA CA CA CT CA
126846 GT * 10 18/20 GT AT GT GT GT GT GT GT GT AT
128710 AT * 11 20/22 AT AT AT AT AT AT GT AC AT AT AT
137287 TG * 11 20/22 TG CG TG TG TG TG TG TG TG CG TG
152229 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TG AA
162758 TG * 15 27/30 TG CG TG TG TG TG TG TG TG TG TG TG TG TT TT
186385 AT * 11 21/22 AT AT AT AT AC AT AT AT AT AT AT
193970 TA * 10 18/20 TA TA TA TA TA TA TA TA TA AT
194228 TG * 12 22/24 TG TG TG TC AG TG TG TG TG TG TG TG
198104 TG * 11 20/22 TG TG TT TG TG TG TG TG TG TG TT
198624 CA * 12 22/24 CA CA CA CA CA CA CA CA CT CA CA TA
199377 AT * 10 18/20 AT AT AT AT GT AT AT AC AT AT
223432 TG * 11 20/22 TG TG TG TG AG TG AG TG TG TG TG
223625 AT * 10 18/20 AT CT AT AT AT AT AT AT AT AC
225832 CT * 11 20/22 CT CG CT CG CT CT CT CT CT CT CT
230336 TG * 10 18/20 TG TG TG TG TG TG TG TG TG CC
-----------------------------------------------------------------------------------------
Total sequence length......................... 233313
Total number of repeats detected.............. 39
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 2 2 0 3 5 13 3 1 1 0 0
15 to 19 0 1 0 0 0 2 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 3 2 0 3 7 14 3 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 3 TA = 8
2 AG + 0 GA + 1 CT + 1 TC = 4
3 GT + 14 TG + 7 CA + 3 AC = 27
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7300894|gb|AE003740.1|AE003740 Drosophila melanogaster genomic scaffold 142000013386035 section 65 of 105, complete sequence
Position Repeat Coverage Repeat
2749 CA * 10 18/20 CA CA CA CA CA CT CA CA CA AA
8300 AC * 11 20/22 AC AC GC AC AC AC AC AC AC AC AA
15624 AC * 11 20/22 AC AC AG AC AC AC AC AC AC AC AG
72279 CA * 16 29/32 CA CA CA CA CA CA CA CA CA CA CA CA CA CA GA TT
81853 CA * 13 24/26 CA CA CA CA CA CA CT CA CA CA CA CA AA
108861 AT * 10 18/20 AT AT AT AT AT AT AT AT AC TT
135697 CA * 15 27/30 CA CA CA CA CA CG CA CA CA CA CA CA CA TA GA
135884 AT * 10 18/20 AT AC AT AT AT AT AT CT AT AT
147225 AT * 13 24/26 AT AT AT AT AT CC AT AT AT AT AT AT AT
148790 GT * 17 31/34 GT GT GA GT GT GT GC GT GT GT GT GT GT GT GT GT GG
153065 CA * 16 29/32 CA CC CA CT CA CA CA CA CA CA CA CA CA CA CA CT
162755 TG * 10 18/20 TG TG TC TG TG TG TG TG TG CG
164804 AT * 15 27/30 AT TT AT AT AT AT AT AT AT AT AT AT AT GT GT
171483 TA * 12 22/24 TA TA TA CA TA TA TA TA TA TA TA TT
175198 TG * 10 19/20 TG TA TG TG TG TG TG TG TG TG
176117 AT * 12 22/24 AT AC AT AT AT AT AC AT AT AT AT AT
176733 AG * 21 38/42 AG AG AG AG AG AG AG AG AG AG AG AG AG AG TG AG CG AG AG AG GA
179009 CA * 11 20/22 CA CA CA CA CA CA AA CA CA CA CT
179256 CA * 11 20/22 CA CA CA CG CA CA CT CA CA CA CA
185462 TG * 15 27/30 TG TG CG TG TG TG TG TG TG TG TG CG TG TG GG
188226 AT * 11 21/22 AT AT AT AT AT AT AT TT AT AT AT
196409 AC * 19 35/38 AC AC AT AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC TT
199832 CA * 12 22/24 CA CA CT CA AA CA CA CA CA CA CA CA
202184 TG * 17 31/34 TG TG TG TG TG TG TG TG CT TG TG TG TG TG TG TG TA
207144 GT * 10 18/20 GT GC GT GT GT AT GT GT GT GT
209102 CA * 16 29/32 CA CA CA CA CA CA CA CA CC CA CA CA CC CA AA CA
212315 TG * 11 20/22 TG TG TT TG TG TG TG TG TG TG TA
218039 TG * 10 18/20 TG TG TG CG TG TG TG TG TG TA
219370 TG * 10 18/20 TG TG AG AG TG TG TG TG TG TG
222690 GT * 10 18/20 GT TG GT GT GT GT GT GT GT GT
222964 GT * 10 18/20 GT GT GT GT GT TT GT GT AT GT
222985 TG * 15 27/30 TG TG TG TG GG TG TG TG TG TG TG TG TG TG GA
225514 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC AC AC CT
231471 TG * 20 36/40 TG CC TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TT TG CG
233990 GT * 15 27/30 GT GT GT GT GT GT AT GT GT GT GT GT GG GT TT
-----------------------------------------------------------------------------------------
Total sequence length......................... 234569
Total number of repeats detected.............. 35
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 1 0 0 3 5 5 3 0 0 0 0
15 to 19 1 0 0 0 1 4 3 2 0 0 0 0
20 to 24 0 0 1 0 0 0 1 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 6 1 1 0 4 9 9 5 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
6 AT + 1 TA = 7
1 AG + 0 GA + 0 CT + 0 TC = 1
5 GT + 9 TG + 9 CA + 4 AC = 27
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7300851|gb|AE003739.1|AE003739 Drosophila melanogaster genomic scaffold 142000013386035 section 64 of 105, complete sequence
Position Repeat Coverage Repeat
9234 AT * 16 29/32 AT AT AT AT GT AT AT AT AT AT AT AT AT TT AT GT
42316 TA * 12 22/24 TA TA AA TA TA TA TA TA TA TG TA TA
48270 AG * 11 20/22 AG CG AG TG AG AG AG AG AG AG AG
54217 AC * 10 18/20 AC AA AC AC AC AC AC TC AC AC
54716 TC * 13 24/26 TC TC TC TC TC TC TC TC TT GC TC TC TC
54901 CA * 13 25/26 CA CA CA CA CA CA CA CA CA CA CA TA CA
55790 TA * 12 22/24 TA TA TA TA TA TA TA TA TC AA TA TA
59111 CA * 10 18/20 CA CA CA CA CA CG CG CA CA CA
59291 TA * 10 18/20 TA TA TA TA TA TA TG TA TA TT
59460 AT * 13 25/26 AT AT AT AT AT AT AT AT AA AT AT AT AT
63567 AT * 10 18/20 AT GA AT AT AT AT AT AT AT AT
64655 TA * 14 26/28 TA TA TA TA TA TA AA TA TA TA TA TA TT TA
72185 TG * 11 20/22 TG TG TG TG TG TG TG TG AG GG TG
72375 AC * 11 20/22 AC AC AC AC TC AC AC AC AC AC TC
72824 GT * 15 27/30 GT GT GT GT GT GT GT GT GT GT GT GT GT AA GG
77129 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC GC AC GC
82823 GT * 10 18/20 GT GT GG CT GT GT GT GT GT GT
91565 AT * 18 33/36 AT AT AT AC AT TT AT AT AT AT AT AT AT AT AT AT AT GT
94142 AC * 11 20/22 AC AC CA AC AC AC AC AC AC AC AC
111887 AT * 27 49/54 AT AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT AG AT AT AT GC
127255 AT * 10 19/20 AT AT AT AT AT AT AT AT AT AA
127990 AT * 10 18/20 AT AT AT AT AT GT AT AT GT AT
131720 AT * 11 21/22 AT AT AT AT AT AT AT AT AT AA AT
147753 CA * 10 18/20 CA CA CA CA TA CT CA CA CA CA
157787 CA * 10 18/20 CA CA CA CA CA CA CA AC CA CA
174470 CA * 14 26/28 CA CA CA CA CA AG CA CA CA CA CA CA CA CA
175808 TG * 12 22/24 TG TG TG TG TG TG TG TG TG CG TA TG
176332 CT * 10 18/20 CT CT CT CT CT CG CT CT CT CG
186630 AT * 10 19/20 AT AT AT AT AA AT AT AT AT AT
204754 AG * 13 24/26 AG CG AG AG AG AG AG AG AG AG AG AG CG
220313 TA * 15 28/30 TA TA CA TA TA TA TA CA TA TA TA TA TA TA TA
222213 GT * 11 20/22 GT GT GT GT GT GT GT GT TT GT CT
-----------------------------------------------------------------------------------------
Total sequence length......................... 223815
Total number of repeats detected.............. 32
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 6 4 2 0 4 5 2 2 1 1 0 0
15 to 19 2 1 0 0 0 0 0 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 1 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 9 5 2 0 4 5 2 3 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
9 AT + 5 TA = 14
2 AG + 0 GA + 1 CT + 1 TC = 4
3 GT + 2 TG + 5 CA + 4 AC = 14
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7300816|gb|AE003738.1|AE003738 Drosophila melanogaster genomic scaffold 142000013386035 section 63 of 105, complete sequence
Position Repeat Coverage Repeat
27001 GA * 17 31/34 GA GA GA GA GA GA GA GA GA GA GA TA GG GA TA GA GA
40531 TG * 13 24/26 TG TG TG TG AG TG TG TG TG TG TG TG TA
42753 CA * 10 19/20 CA CA CC CA CA CA CA CA CA CA
53858 TA * 10 18/20 TA TA TG TA TT TA TA TA TA TA
55338 GT * 15 27/30 GT GT GT GT GT GT GT GT GT GT GT GT GT GC AG
59081 GT * 11 20/22 GT GT GT GG GT GT GT GG GT GT GT
64144 GT * 17 31/34 GT GT GT GT GT GT GC CT GT GT GT GT GT GT GT AT GT
70180 CA * 10 19/20 CA CA CA CA CA CA CA CA CA CC
72547 TG * 20 36/40 TG TG TG TG TG TG TG TG TG TG TG TG CG TG TG TG CT TG TG GG
83416 GT * 11 20/22 GT GT GT GT GT GT GT GT GG GT GC
95199 AT * 11 20/22 AT AT AT AT AT AT AT AT AT GG AT
113864 CT * 17 31/34 CT CT CT CT CT CT CT CT CT CT CT GT CT CT GT CT GT
121128 CA * 10 18/20 CA CA CC CA CA CA CC CA CA CA
129608 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AC TT
131286 CA * 11 20/22 CA AA CA CA CA CA CA CA CA CA TA
149355 AT * 10 18/20 AT AT AA AT AT AT AT GT AT AT
157936 AC * 10 18/20 AC AC AC AC AC AC AC AC AG AG
161846 CA * 11 20/22 CA CT CA CA CA CA CA CA CA GA CA
205551 AT * 15 28/30 AT AT AT CT AT AT AT AT AT AT AT AT AT AG AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 226102
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 1 0 0 1 5 1 2 0 0 0 0
15 to 19 1 0 0 1 0 0 0 2 0 1 0 0
20 to 24 0 0 0 0 0 0 1 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 1 0 1 1 5 2 4 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 1 TA = 5
0 AG + 1 GA + 1 CT + 0 TC = 2
4 GT + 2 TG + 5 CA + 1 AC = 12
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7300796|gb|AE003737.1|AE003737 Drosophila melanogaster genomic scaffold 142000013386035 section 62 of 105, complete sequence
Position Repeat Coverage Repeat
2737 AT * 18 33/36 AT AT AT AT GC AT AT AT AT AT AT AT AT AT AA AT AT AT
6232 AT * 13 24/26 AT AT AT AT AT AT AT TT AT AT AT AT AG
8289 AT * 13 24/26 AT AT AT AT AT AT AT AT AT AT AA AT TT
8349 GT * 10 19/20 GT GT GT GT GT GT GT GA GT GT
9073 GT * 11 20/22 GT GT GT GT GT GT GT GT GC GA GT
10180 GT * 12 23/24 GT GT GT GT GT GT GT GT GT GT GA GT
10598 TG * 20 36/40 TG TA TG AG TG TG TG TG TG TG TG TG TG TG TG TG GG TG TG TA
11172 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GT TT GT GG
15339 TG * 10 19/20 TG TG TA TG TG TG TG TG TG TG
16641 TG * 10 18/20 TG CG TG TG TG TG TG TG AG TG
17969 GT * 12 22/24 GT GT GC GT GT GT GT GT GT GT GT GA
19298 AT * 10 18/20 AT TT TT AT AT AT AT AT AT AT
29687 TA * 16 29/32 TA TA TA TA TA TC TA TA TA TA TA TA TG TA TA TC
30611 TA * 15 27/30 TA TA TA TA CA TA TA TA AA TA TA TA TA TA TT
34916 CA * 23 42/46 CA CA CA CG CA CA CA AA CA CA CA CA CA CA CA CA CA CA CA CA CC AA CA
42106 TG * 10 18/20 TG CG TG TG TG TT TG TG TG TG
43482 TG * 11 21/22 TG TG TG TG TG TG TG TG TG TG TT
44876 GT * 15 27/30 GT GT GT GT GT GT GA GT GT GT AT GT GT GT TT
45027 CA * 12 22/24 CA TA CC CA CA CA CA CA CA CA CA CA
45098 AC * 10 18/20 AC AC AC AC AC AC AT AC AT AC
45993 CA * 10 19/20 CA CA CA CG CA CA CA CA CA CA
51408 TA * 20 36/40 TA TA TA TA TA TA TA TA TA TA TA TA TA TA CA TA TA TA AT AA
92212 TA * 10 18/20 TA TA TA TA CA TA CA TA TA TA
97835 AT * 10 18/20 AT AT AT AT AC AT AT AT TT AT
110929 TC * 11 20/22 TC TC CC TC TC TC TC TC TC TC TG
118562 TA * 22 40/44 TA TA TA TA TA TA TA TA TA TA TA TA TA CA CA TA TA TA TT TA CA TA
122008 AT * 11 21/22 AT AT AT AT AT AT AA AT AT AT AT
122622 AT * 11 20/22 AT AT AC AT AT AT AT AT AT AT TT
133240 CA * 15 28/30 CA TA CA CA CA CA CA CA CA CA CA CA CA CA CT
143502 TG * 15 27/30 TG TG TG TG CG CG TG TG TG TG TG TG TG TG TC
143575 GT * 10 19/20 GT GT GT GT GT GT GT GT GT GG
154980 CT * 16 29/32 CT CT CT CT CT CT CT AT CT CT CT CA CT CT TT CT
155323 GT * 11 21/22 GT GT GT GT GT GT GT GG GT GT GT
155982 CA * 10 18/20 CA CA CT CA CA CA CG CA CA CA
156936 GT * 15 28/30 GT GT GC GA GT GT GT GT GT GT GT GT GT GT GT
168641 AT * 20 37/40 AT AT AT AT AT AT AT AC AT AT AT AT AT AT AT AT AT GT AT GT
183085 TC * 11 20/22 TC TC TT TC TC TC TC TC TC TA TC
192668 TG * 11 20/22 TG TG AG TG TG TG TG TG GG TG TG
195617 CA * 14 26/28 CA AA CA CA CA CA CA CA CA CA CA CA CA GA
203672 AC * 15 27/30 AC AC AC AC AC AC AC AC AC AC AT AC GC AC AT
209718 AT * 16 29/32 AT AT AT AG AT AT AT GT AT AT AT AT AT AT AT AA
215434 AT * 11 20/22 AT AT AT AC AT AT GT AT AT AT AT
215876 TA * 10 18/20 TA TA AA TA AA TA TA TA TA TA
224575 TC * 10 18/20 TC TC TC TA TC CC TC TC TC TC
236253 AC * 10 18/20 AC AC AC AC AA AC AC AC AC CC
-----------------------------------------------------------------------------------------
Total sequence length......................... 238433
Total number of repeats detected.............. 45
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 7 2 0 0 2 4 5 7 3 0 0 0
15 to 19 2 2 0 0 1 1 1 2 0 1 0 0
20 to 24 1 2 0 0 0 1 1 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 10 6 0 0 3 6 7 9 3 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
10 AT + 6 TA = 16
0 AG + 0 GA + 1 CT + 3 TC = 4
9 GT + 7 TG + 6 CA + 3 AC = 25
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7300765|gb|AE003736.1|AE003736 Drosophila melanogaster genomic scaffold 142000013386035 section 61 of 105, complete sequence
Position Repeat Coverage Repeat
5883 CT * 10 19/20 CT CT CT CT CC CT CT CT CT CT
21659 TC * 13 24/26 TC TC TC TC TC TC TC TC TG TC TG TC TC
29565 AT * 11 20/22 AT AT AT AT AT TT AT AT AT AT AA
86986 AC * 10 18/20 AC GT AC AC AC AC AC AC AC AC
98849 CT * 11 20/22 CT CA CT CT CT CT TT CT CT CT CT
102439 TG * 13 24/26 TG GC TG TG TG TG TG TG TG TG TG TG TG
103367 TA * 15 27/30 TA TA TA TA TA TA TA TA TA TA TG TA TT TA TT
104278 CA * 10 18/20 CA CG CA TA CA CA CA CA CA CA
109908 GT * 10 18/20 GT GT GG GT GT GT GT GT GT GG
112492 CA * 11 20/22 CA CA CA CA CA CA CG CA CA GA CA
116473 AC * 11 21/22 AC CC AC AC AC AC AC AC AC AC AC
116683 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG GC
118556 AC * 12 22/24 AC GC AC AC AC AC AC AC AC AC AC AG
127083 CA * 16 29/32 CA CA CA CA CA CA CA CA CA CA CG AA CA CA CA CT
129063 AT * 10 18/20 AT AT AT AT AT AT AA AA AT AT
140823 AC * 17 31/34 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC CG AA
154061 GT * 12 22/24 GT GC GT GT GT GT GT GT GT GT GT GA
155679 GT * 11 21/22 GT GT GT GT GT GT GC GT GT GT GT
155741 GT * 11 20/22 GT GT GT GT GT GT GT TT GT TT GT
158574 AG * 14 26/28 AG AG AG AG AG AG AG AG AG AG AG AG CG AC
167864 AT * 10 18/20 AT AT TA AT AT AT AT AT AT AT
195634 AG * 12 23/24 AG AG AT AG AG AG AG AG AG AG AG AG
201014 GT * 10 18/20 GT GT GT GT GT GA GT GC GT GT
201043 TG * 11 20/22 TG TC TG TA TG TG TG TG TG TG TG
203473 CA * 10 19/20 CA CA CA CA CA CA CA CA CA CT
204236 TG * 13 24/26 TG TG CG AG TG TG TG TG TG TG TG TG TG
207777 GT * 10 18/20 GT GT GT GT GT GT GT GT GC GA
215875 TG * 10 18/20 TG TG TG TG GG TG TG TA TG TG
221750 CA * 15 27/30 CA AA CA CT CA CA CA CA CA CA CA CA CA CA CC
222889 GT * 13 24/26 GT GT GG GT GT GT GT GT GT GT GT GC GT
229993 GT * 11 20/22 GT GT GT GT GT GT GT GC GT GA GT
240771 GT * 15 27/30 GT GT GT GT GT GT GT GT GT AT GT TT GT GT GG
246672 AT * 12 22/24 AT AC AT AT AT AT AT AT AT AT AT AN
249086 CA * 13 25/26 CA CA CG CA CA CA CA CA CA CA CA CA CA
250775 TG * 12 22/24 TG TG TG CG TG TG TG TG AG TG TG TG
253302 GT * 15 27/30 GT CT CT GT GT GT GT GT GT GT GT GT GT GT GC
254127 CA * 10 18/20 CA CA CA CA CA TA CA CA GA CA
254148 AC * 12 22/24 AC AC AC AC AC AC AC GC AC AC GC AC
254681 CT * 11 21/22 CT CA CT CT CT CT CT CT CT CT CT
256140 GT * 11 20/22 GT GT GT GT GT AT GT GT GT GT GC
-----------------------------------------------------------------------------------------
Total sequence length......................... 260278
Total number of repeats detected.............. 40
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 0 2 0 4 5 6 9 1 3 0 0
15 to 19 0 1 0 0 1 2 0 2 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 1 2 0 5 7 6 11 1 3 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 1 TA = 5
2 AG + 0 GA + 3 CT + 1 TC = 6
11 GT + 6 TG + 7 CA + 5 AC = 29
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7300751|gb|AE003735.1|AE003735 Drosophila melanogaster genomic scaffold 142000013386035 section 60 of 105, complete sequence
Position Repeat Coverage Repeat
1107 AT * 11 20/22 AT AT CT AT AT AT AT AT AT AT TT
5860 GT * 10 19/20 GT GA GT GT GT GT GT GT GT GT
53760 TA * 12 22/24 TA TA TA TA TA TG TA TA TA TA TA TT
66587 TG * 12 23/24 TG TC TG TG TG TG TG TG TG TG TG TG
73635 AT * 11 20/22 AT AT AG AT AT AT AC AT AT AT AT
87297 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AT AG
87399 GA * 10 18/20 GA GA GA GA GA GA GA CA GA AA
88017 TG * 10 18/20 TG TC TG AG TG TG TG TG TG TG
88213 TG * 17 31/34 TG TC TG TG TG TG TG TG TG TG TG TG TG TG TG TA TC
93785 CT * 11 20/22 CT CG CA CT CT CT CT CT CT CT CT
96967 TC * 10 18/20 TC TC TC TC TC TC TC AC TC GC
97348 CT * 13 25/26 CT TT CT CT CT CT CT CT CT CT CT CT CT
125564 TG * 24 44/48 TG TG TG AC TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG GT
125894 GT * 10 18/20 GT GT GA GT GA GT GT GT GT GT
134447 CT * 16 29/32 CT CT CT CT CT TT CC CT CT CT CT CT CT CT AT CT
141340 TC * 13 24/26 TC GC TC TC TC TC TC TC TC TC TC TC CC
141538 AG * 11 20/22 AG AG AG AG AG AG AG AG TG AG CG
150185 TG * 13 24/26 TG TG TG TG GG AG TG TG TG TG TG TG TG
151901 TG * 12 22/24 TG TG TG AA TG TG TG TG TG TG TG TG
152489 CA * 12 23/24 CA CA CA CA CA CA CA CA CA CA CA AA
154041 GA * 12 22/24 GA CA GA GA GA CA GA GA GA GA GA GA
154566 GT * 11 21/22 GT GT GT GT GT GT AT GT GT GT GT
156606 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GT GT TG GT
157125 TG * 14 26/28 TG TG TG TG TG TG TG TG TG TG TG GT TG TG
157436 GA * 10 19/20 GA GA GA GA GA GA GA GA GA GC
157662 AT * 10 18/20 AT AT AT AT AC AT AT AT AC AT
164503 CT * 10 18/20 CT CT CT CT CT CT TT CT CC CT
168396 GA * 12 22/24 GA GA TA GA GA GA GA GA GC GA GA GA
187182 TC * 11 20/22 TC TC TC GC TC TC TC TT TC TC TC
192964 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TT TT
196303 GT * 10 18/20 GT TT GT GT GT GC GT GT GT GT
209877 TA * 11 20/22 TA TA TA TA CA TA TA TC TA TA TA
226405 TG * 17 31/34 TG TG TG TG TG TG TG TG TG TG TG TG TG CG TG GG GG
-----------------------------------------------------------------------------------------
Total sequence length......................... 231849
Total number of repeats detected.............. 33
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 2 1 4 1 1 6 5 3 3 0 0
15 to 19 0 0 0 0 0 0 2 0 0 1 0 0
20 to 24 0 0 0 0 0 0 1 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 2 1 4 1 1 9 5 3 4 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 2 TA = 5
1 AG + 4 GA + 4 CT + 3 TC = 12
5 GT + 9 TG + 1 CA + 1 AC = 16
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7300718|gb|AE003734.1|AE003734 Drosophila melanogaster genomic scaffold 142000013386035 section 59 of 105, complete sequence
Position Repeat Coverage Repeat
43056 AT * 12 23/24 AT AT AT AT AT AT AT AT AT AT AT AA
49430 CA * 12 22/24 CA CA CG CA CA CA CT CA CA CA CA CA
74041 CA * 11 20/22 CA CG CA TA CA CA CA CA CA CA CA
102779 TG * 10 18/20 TG TA TG TG TG TG TG TG CG TG
105551 GT * 12 23/24 GT GT GT GT GT GT GT GC GT GT GT GT
105869 TA * 11 20/22 TA TA TA TA TA TA TA TG TA TA TG
106116 CA * 10 18/20 CA CA CA CA CC CA CA CG CA CA
109301 GT * 11 20/22 GT GT GT GT GC GT GT GT GT GT GC
110394 AG * 11 20/22 AG AG AG AG AG AG GT AG AG AG AG
114953 CA * 10 18/20 CA CA CA CA CA CA CT CT CA CA
116227 GT * 13 24/26 GT GT AT GT GT GT GT GT GT GT GT GT GC
153753 TG * 10 18/20 TG TC TG TG TG TG CG TG TG TG
196250 AG * 10 18/20 AG AG AG AT AG AG AG AG AT AG
211019 CT * 11 20/22 CT CC CT CT CT CT CT CT CT CT CA
223000 CT * 11 20/22 CT CA CT CT CT GT CT CT CT CT CT
236655 CT * 10 18/20 CT CT CT CT CT CT CT CT TG CT
-----------------------------------------------------------------------------------------
Total sequence length......................... 240910
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 1 2 0 0 4 2 3 0 3 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 1 2 0 0 4 2 3 0 3 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 1 TA = 2
2 AG + 0 GA + 3 CT + 0 TC = 5
3 GT + 2 TG + 4 CA + 0 AC = 9
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7300681|gb|AE003733.1|AE003733 Drosophila melanogaster genomic scaffold 142000013386035 section 58 of 105, complete sequence
Position Repeat Coverage Repeat
1540 CA * 12 22/24 CA CA CT CA CA CC CA CA CA CA CA CA
33664 TA * 12 22/24 TA TA TA TA TA CA TA TA TA TA TA TG
34111 TA * 16 29/32 TA TA TA TA TA TA TA TA TA TA TA TA TT AA TA TT
77497 AG * 12 22/24 AG AC AG AA AG AG AG AG AG AG AG AG
108085 TA * 12 23/24 TA TA TA TA TA TA TA TA CA TA TA TA
113114 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG CC
114056 TA * 11 20/22 TA TA TA TA TA AA TA TA TA TA TT
136940 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GG AT GT
143429 TG * 11 20/22 TG TG TG TG TG TA TG TG TG TG GG
158131 CT * 10 18/20 CT CT CT CT CT CC CT CT CT CG
193099 TA * 13 24/26 TA TA TA TA TA TA TA TA TA TA CG TA TA
197087 TC * 10 19/20 TC TC TC TC TC GC TC TC TC TC
220781 TC * 10 18/20 TC TC TC TC TT TG TC TC TC TC
-----------------------------------------------------------------------------------------
Total sequence length......................... 230303
Total number of repeats detected.............. 13
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 4 1 0 0 1 2 1 2 1 0 0
15 to 19 0 1 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 5 1 0 0 1 2 1 2 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 5 TA = 5
1 AG + 0 GA + 1 CT + 2 TC = 4
1 GT + 2 TG + 1 CA + 0 AC = 4
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7300654|gb|AE003732.1|AE003732 Drosophila melanogaster genomic scaffold 142000013386035 section 57 of 105, complete sequence
Position Repeat Coverage Repeat
4166 CT * 15 27/30 CT AT CT CT CT TT CT CT CT CT CT CT CT CT AT
15648 TA * 11 20/22 TA AA TA TA TA TA CA TA TA TA TA
21370 CA * 18 33/36 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CG AA AA CA
22346 AT * 12 22/24 AT GT AT AT GT AT AT AT AT AT AT AT
26224 CT * 12 22/24 CT CT CG CT CT CT CT CT CT CT TT CT
29474 GT * 11 20/22 GT GT AT CT GT GT GT GT GT GT GT
33518 AG * 11 20/22 AG AG AG AG AG AG AG AG AG AG CA
34510 AC * 12 22/24 AC AC AC AC AC AC AC AC CC AC AC AT
34640 TG * 10 18/20 TG TG TG TG TG TG CG TG TG TC
35071 AC * 11 20/22 AC AC AG AC AC AC AC AC AC AC TC
35150 TG * 12 23/24 TG TG TG TG TG TG TG TG TG TG AG TG
43893 CT * 10 18/20 CT CT CT CG CT GT CT CT CT CT
49915 CA * 11 20/22 CA CA CG CA CA CA CA CA CA CA CC
52998 CA * 10 18/20 CA CA CA CA CA CA CA CA CT AA
54178 CA * 11 20/22 CA CA CA CG CA CA CA CG CA CA CA
55063 AC * 10 18/20 AC AC GC AC AC AC AC TC AC AC
56201 CA * 12 23/24 CA CA CA CA CA CA CA CA CA CA CA CT
59078 AC * 10 18/20 AC AC AC AA AA AC AC AC AC AC
59290 AC * 10 18/20 AC AC TC AC AT AC AC AC AC AC
84231 GT * 11 20/22 GT AT GT GT GT GT GT GT GT GT GG
95953 TA * 10 18/20 TA AA TA TA TA TA CA TA TA TA
111558 AT * 11 20/22 AT AT AT AT TT AT AT TT AT AT AT
111607 AT * 10 18/20 AT AT AT AC AT AT GT AT AT AT
135285 AT * 11 20/22 AT AT AT AT AT GT AT AT AT AT TT
144460 CA * 10 18/20 CA CC CA GA CA CA CA CA CA CA
144670 CA * 11 21/22 CA CA CA CA CA CA CA CA CA AA CA
149889 TG * 13 25/26 TG TG TG TG TG TG TG TG TG TG TG TG TT
161000 AT * 12 23/24 AT AT AT GT AT AT AT AT AT AT AT AT
183905 CA * 12 22/24 CA CA CA GA CA CA CA CA CA CA CA CG
184208 GT * 13 24/26 GT GT GT GT CT GT GT CT GT GT GT GT GT
192571 TG * 16 29/32 TG TG TG TG TG TG CG TG TG TG TG TG TG TG AG GG
195539 CA * 11 20/22 CA CA AA CA CA CA CG CA CA CA CA
200236 TC * 12 22/24 TC TC TT GC TC TC TC TC TC TC TC TC
200263 CT * 12 22/24 CT CT CT GT CT CT CT CT CT CT CG CT
207909 CT * 10 18/20 CT CT CT CT CT CT CT CT CT GG
218127 AC * 10 19/20 AC AC AC CC AC AC AC AC AC AC
220524 CT * 13 24/26 CT TT CG CT CT CT CT CT CT CT CT CT CT
225398 AC * 10 18/20 AC AC AC AC AC AC GC AC TC AC
225427 CA * 11 20/22 CA CA AA TA CA CA CA CA CA CA CA
228399 AT * 10 18/20 AT AT AA AT AA AT AT AT AT AT
232803 TG * 10 18/20 TG TG TG TG TG TG TG TG TG GA
-----------------------------------------------------------------------------------------
Total sequence length......................... 234369
Total number of repeats detected.............. 41
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 6 2 1 0 7 9 4 3 1 5 0 0
15 to 19 0 0 0 0 0 1 1 0 0 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 6 2 1 0 7 10 5 3 1 6 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
6 AT + 2 TA = 8
1 AG + 0 GA + 6 CT + 1 TC = 8
3 GT + 5 TG + 10 CA + 7 AC = 25
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7300622|gb|AE003731.1|AE003731 Drosophila melanogaster genomic scaffold 142000013386035 section 56 of 105, complete sequence
Position Repeat Coverage Repeat
12989 TA * 10 18/20 TA TA TA AA TA TA TA TA GA TA
42122 AT * 12 22/24 AT AT AT AT AC AT AT AC AT AT AT AT
69857 TG * 10 18/20 TG TG TG TG TT TG TG CG TG TG
71161 GT * 10 18/20 GT GT GT GT GG TT GT GT GT GT
88268 AT * 12 22/24 AT AT AT AT TT AT AT AA AT AT AT AT
124883 AT * 15 27/30 AT AT AT AT TT AT AT AT AT AT AT AT AT TT GT
144594 TA * 11 20/22 TA TG TA TA TA TA TA TA TT TA TA
172548 TG * 12 22/24 TG TG TG TG TG TG TG TG TT TG TT TG
174423 AT * 16 29/32 AT AT AT AT AT AT AT AT AT AT GT AT AT AT AG AG
187874 AC * 10 18/20 AC AC AC AC AC AC AC AC AG AA
-----------------------------------------------------------------------------------------
Total sequence length......................... 225829
Total number of repeats detected.............. 10
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 2 0 0 1 0 2 1 0 0 0 0
15 to 19 2 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 2 0 0 1 0 2 1 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 2 TA = 6
0 AG + 0 GA + 0 CT + 0 TC = 0
1 GT + 2 TG + 0 CA + 1 AC = 4
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7300601|gb|AE003730.1|AE003730 Drosophila melanogaster genomic scaffold 142000013386035 section 55 of 105, complete sequence
Position Repeat Coverage Repeat
7220 GT * 11 20/22 GT GT GC GA GT GT GT GT GT GT GT
21091 AT * 11 20/22 AT AT GC AT AT AT AT AT AT AT AT
21115 AT * 10 18/20 AT AT AT AT CT AT AT AT AC AT
21913 TA * 10 19/20 TA TA TA TA TT TA TA TA TA TA
30587 TG * 11 20/22 TG TT TG GG TG TG TG TG TG TG TG
45875 TC * 10 18/20 TC TT TC AC TC TC TC TC TC TC
59790 TC * 10 18/20 TC TC TC TC TC TC TC TC TC GT
60480 TG * 16 29/32 TG GG TG TG TG TG TG TG TG TG TG TG TG CG TG CG
75365 TG * 16 29/32 TG TG TG TG TG TG TT TG TG TG TG TG TG CG TG TA
77006 TA * 12 22/24 TA TT TA TA TG TA TA TA TA TA TA TA
77223 AT * 11 21/22 AT GT AT AT AT AT AT AT AT AT AT
90815 TA * 10 19/20 TA TA TA TA TA TA TA TA TA TT
91054 CA * 10 19/20 CA CA CA CA CA CA CA CA CA TA
98111 AG * 17 32/34 AG AG AG AG GT AG AG AG AG AG AG AG AG AG AG AG AG
100493 AT * 10 18/20 AT AT AC AT AT AT AT AT AT TT
116395 AT * 10 18/20 AT AT AT AT AT AT AT AT TT TT
123356 AC * 12 23/24 AC AC AC AC AC AC AC AC AC AC AC AT
124354 GT * 11 20/22 GT GT GT GT GT GT GT GT GT GT CA
128517 GT * 10 18/20 GT GT GT TT TT GT GT GT GT GT
137977 GT * 11 20/22 GT GT GT GT GT GT GT GT GT GG GC
140083 AC * 10 18/20 AC AC AC AC AC AC AC AC AC TT
140577 AT * 10 18/20 AT AT AT AT AT AT AT TT AA AT
142526 AC * 16 29/32 AC AC AC AC AC AC AC AC AC AC AC AC AC AC GT GC
144215 GT * 10 18/20 GT GT GT GT TT GT GT GT GT GC
150668 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG CT
151282 GT * 17 31/34 GT GT GT GT GT GT GT GT GT GT GT GT GC GA GG GT GT
151455 TG * 10 18/20 TG TG TG TG TG TG TG TG TT AG
154493 TG * 11 20/22 TG TG TG CG TG TG TG TG TG TG CG
154549 TG * 10 18/20 TG TG TG TA TG TG TG TG TG GG
173481 GT * 15 27/30 GT GT GT GT GT GT GT GT GT GT GT GC GG GT GC
173732 CA * 15 27/30 CA GA CA CA CT CA CA CA CA CA CA CA CA CA AA
176245 AC * 17 31/34 AC AC AC AC AC AA AT AC AC AC AC AC AC AC TC AC AC
178530 TG * 10 18/20 TG TG TG TG TG TG CG TG TG TC
181925 CT * 10 18/20 CT CT CT CT CT AT CT AT CT CT
-----------------------------------------------------------------------------------------
Total sequence length......................... 221365
Total number of repeats detected.............. 34
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 6 3 0 0 2 1 6 5 2 1 0 0
15 to 19 0 0 1 0 2 1 2 2 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 6 3 1 0 4 2 8 7 2 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
6 AT + 3 TA = 9
1 AG + 0 GA + 1 CT + 2 TC = 4
7 GT + 8 TG + 2 CA + 4 AC = 21
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7300591|gb|AE003729.1|AE003729 Drosophila melanogaster genomic scaffold 142000013386035 section 54 of 105, complete sequence
Position Repeat Coverage Repeat
23050 GT * 10 18/20 GT GT GT GT GT GT GT GT GT CG
25318 AC * 11 20/22 AC AC AC AC GC AC AC AC AC AC TC
36541 GT * 11 20/22 GT GT GT GT AT GT GT GT GT GC GT
36607 CA * 10 18/20 CA CT CA CA CA CA CA CA CA CT
57873 GT * 12 22/24 GT GA GT TT GT GT GT GT GT GT GT GT
67588 AG * 11 20/22 AG AG AG AG AG AG AA AG AG AG CG
69769 CA * 12 22/24 CA AA CA CA CA CA CA CA CA CA CA TA
70025 CA * 18 33/36 CA CT CA CA CA CA CA CA CA CA CA CA CA CA CA CA CT CG
72170 CA * 12 22/24 CA TA CG CA CA CA CA CA CA CA CA CA
74520 TG * 10 18/20 TG TG TG TG TT TG TG AG TG TG
104368 GT * 14 26/28 GT GT GT GT GT GT GT GT CT GT GT GT GT AT
118748 CA * 17 31/34 CA CA CA CA TA CA CA CA CA CA CA CA CA CA CA CA TC
118916 TG * 10 18/20 TG TG TG TG TG TG TG TG AC TG
123837 TG * 10 18/20 TG CA TG TG TG TG TG TG TG TG
126227 CA * 10 18/20 CA CA GA CA CA CG CA CA CA CA
126867 TG * 10 18/20 TG CG TG TG AG TG TG TG TG TG
133108 AG * 21 38/42 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG CT TT
143394 CA * 15 27/30 CA CA CA CA CA CA CA CA CA CA GA CA CA TA CT
143679 AC * 10 18/20 AC AC AC AC AC AC AT AC GC AC
148199 TG * 11 21/22 TG TG TG TG TG TG TG TG TG CG TG
153090 CA * 11 20/22 CA TA CA CA CA CA CA CA CA CA CT
157465 AC * 10 18/20 AC GC AC CC AC AC AC AC AC AC
161539 AT * 11 20/22 AT AT AT AT AT AC AT AC AT AT AT
162843 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AC AA AT
168820 TG * 11 20/22 TG TG TG TG TG TA TG TG TG CG TG
168844 TG * 10 18/20 TG TG GG TG TG TA TG TG TG TG
171657 AT * 10 18/20 AT AT AT AT AC CT AT AT AT AT
173204 AT * 11 20/22 AT AT AT AT AT AA AA AT AT AT AT
182432 TC * 10 19/20 TC TC TC TC TC TC TC TC TC TT
183956 CA * 10 18/20 CA CT CA CA CG CA CA CA CA CA
184156 GT * 10 18/20 GT GT GT TT GA GT GT GT GT GT
208028 CA * 10 18/20 CA CA AC CA CA CA CA CA CA CA
211271 AC * 11 20/22 AC GC AC AC AC AC AC AC AC TC AC
211619 AC * 10 18/20 AC AA GC AC AC AC AC AC AC AC
214431 TG * 15 27/30 TG TG AG AG TG TG TG TG TG TG TG TG TG TG GG
-----------------------------------------------------------------------------------------
Total sequence length......................... 230977
Total number of repeats detected.............. 35
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 0 1 0 6 7 7 5 1 0 0 0
15 to 19 0 0 0 0 0 3 1 0 0 0 0 0
20 to 24 0 0 1 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 0 2 0 6 10 8 5 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 0 TA = 3
2 AG + 0 GA + 0 CT + 1 TC = 3
5 GT + 8 TG + 10 CA + 6 AC = 29
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7300549|gb|AE003728.1|AE003728 Drosophila melanogaster genomic scaffold 142000013386035 section 53 of 105, complete sequence
Position Repeat Coverage Repeat
37320 AG * 12 22/24 AG AG AG AG AG AG AG AG TG AG CG AG
101633 CA * 12 22/24 CA CA CA CA CA CA CA CG CA CG CA CA
106451 TG * 11 20/22 TG TG TG TG GC TG TG TG TG TG TG
115648 TC * 11 20/22 TC TC TC TC TC TC TC CC TC TC TT
128000 TG * 10 18/20 TG TG TG TG TG CG TG TG TG TT
142667 GT * 11 21/22 GT GT GT GC GT GT GT GT GT GT GT
149082 TG * 11 20/22 TG TG TC TG TG TG TG TT TG TG TG
153641 GT * 18 33/36 GT AT GC GT GT GT GT GT GT GT GT GT GT GT GT GT TT GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 231828
Total number of repeats detected.............. 8
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 0 1 0 0 1 3 1 1 0 0 0
15 to 19 0 0 0 0 0 0 0 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 0 1 0 0 1 3 2 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 0 TA = 0
1 AG + 0 GA + 0 CT + 1 TC = 2
2 GT + 3 TG + 1 CA + 0 AC = 6
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7300524|gb|AE003727.1|AE003727 Drosophila melanogaster genomic scaffold 142000013386035 section 52 of 105, complete sequence
Position Repeat Coverage Repeat
11585 TA * 12 22/24 TA TA TA TA TA TA TA TA TA TA TA CG
21028 TA * 12 22/24 TA TA TA TA TA TA TA CG TA TA TA TA
28427 TC * 13 24/26 TC CC TC TC TC TC TC TC TC TC TC TC TT
30550 TA * 13 24/26 TA TA TA TA TA TA TA TA TA TG TA TA TT
61281 CT * 12 22/24 CT CT CA CA CT CT CT CT CT CT CT CT
61312 TC * 12 23/24 TC TC TC TA TC TC TC TC TC TC TC TC
77880 TG * 12 22/24 TG TG TG CG TG TG TG TG TG TA TG TG
84568 AC * 15 27/30 AC CA AC AC AC AC AC AC AC AC AC AC AC AC AG
87189 CA * 25 46/50 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CC CG TG CA
93558 AC * 20 36/40 AC AC AC AC AC AC AC AC AC AC AC AA AC AC AC AT GC AC AC AG
96486 CA * 19 35/38 CA CA CA CT CA GA CA CA CA CA CA CA CA CA CA AA CA CA CA
97879 AT * 13 24/26 AT AT AT TT GT AT AT AT AT AT AT AT AT
98091 TA * 17 32/34 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA GA TG
100807 CA * 10 18/20 CA CA CA CA CA CG CA CA TA CA
104954 AC * 10 19/20 AC AC AC AC AC AC AC GC AC AC
108146 TG * 12 22/24 TG TA TG TA TG TG TG TG TG TG TG TG
108328 TG * 10 18/20 TG GG TG TG TG TG CG TG TG TG
108509 GT * 10 18/20 GT GT AT GT GT GT GT GT GT AT
110355 CT * 10 18/20 CT CT CT CT CT CT CT CT CT TA
117379 TC * 10 19/20 TC TC TC TC TC TC TC TC TC TT
121501 TG * 18 33/36 TG TG TG TA TG TG TG TG TG TG TG TG TG TG TG TG TT TT
132222 TG * 13 24/26 TG TG TG TG TG TG TG TG AG TG TG GG TG
132258 TG * 10 18/20 TG AG TG TG TG TG TG TG TG GG
137177 GT * 12 22/24 GT GT GT GT GT GT GT GT TT GT GT AT
142657 CA * 13 24/26 CA CA TA CA CA CT CA CA CA CA CA CA CA
145601 AG * 18 34/36 AG AG AG AG AG AG AG AG AG CG AG AG AG AG AG AG AG AT
155993 AT * 11 21/22 AT AT AC AT AT AT AT AT AT AT AT
157938 AC * 10 18/20 AC AC AC AC TC AC GC AC AC AC
161498 TC * 10 18/20 TC TC TG TC TC TT TC TC TC TC
164109 AT * 11 20/22 AT AC GT AT AT AT AT AT AT AT AT
173821 TC * 16 29/32 TC TC TA AC TC TC TC TC TC TC TC TC TC TC TC TT
219803 TG * 12 23/24 TG TG TG TG TG TG TG TG TG TG TG GG
221613 AT * 11 20/22 AT AT AT AT AT AT AC AT AC AT AT
222328 AT * 10 18/20 AT AT AT GT AT GT AT AT AT AT
242293 AT * 12 22/24 AT AT AT AT AT AT AT AT AT AT AA AA
-----------------------------------------------------------------------------------------
Total sequence length......................... 242709
Total number of repeats detected.............. 35
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 6 3 0 0 2 2 6 2 4 2 0 0
15 to 19 0 1 1 0 1 1 1 0 1 0 0 0
20 to 24 0 0 0 0 1 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 1 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 6 4 1 0 4 4 7 2 5 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
6 AT + 4 TA = 10
1 AG + 0 GA + 2 CT + 5 TC = 8
2 GT + 7 TG + 4 CA + 4 AC = 17
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7300503|gb|AE003726.1|AE003726 Drosophila melanogaster genomic scaffold 142000013386035 section 51 of 105, complete sequence
Position Repeat Coverage Repeat
96672 AC * 11 20/22 AC AC AC AC AC GC AC AC AC AC AG
131406 AG * 10 19/20 AG AG AG AG AG AG AA AG AG AG
140667 GT * 10 19/20 GT GT GT GT GT GT GT GT GG GT
142808 CT * 12 22/24 CT CT CT CT CG CT CA CT CT CT CT CT
143499 CT * 11 20/22 CT TT CG CT CT CT CT CT CT CT CT
144780 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG CT TG
147550 GA * 10 18/20 GA TA AA GA GA GA GA GA GA GA
153531 CA * 11 20/22 CA CA CA CA CT CA CA CA CA CA TA
156336 AT * 10 18/20 AT AT AA CT AT AT AT AT AT AT
158997 GA * 10 18/20 GA GA GA AA AA GA GA GA GA GA
159711 TA * 10 18/20 TA TA TA TA TA AA TA TG TA TA
174232 AG * 11 20/22 AG AG AG AG AG AG AG AG AG GG AA
177108 GA * 10 18/20 GA GA GG GA GA AA GA GA GA GA
179529 GA * 11 20/22 GA GA GA GA GA GA GA GA GA AA GC
194612 TG * 15 28/30 TG TG TG TG TG TG CG TG TG TG TG TG TG TG TA
197905 CA * 17 31/34 CA CA CA CA CA CA CA CA CA CA AA CA CA CA CA CA GG
198080 AC * 10 18/20 AC AC CC AC AC AC AC AG AC AC
225303 GT * 10 18/20 GT CT GT TT GT GT GT GT GT GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 239525
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 1 2 4 2 1 1 2 0 2 0 0
15 to 19 0 0 0 0 0 1 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 1 2 4 2 2 2 2 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 1 TA = 2
2 AG + 4 GA + 2 CT + 0 TC = 8
2 GT + 2 TG + 2 CA + 2 AC = 8
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7300476|gb|AE003725.1|AE003725 Drosophila melanogaster genomic scaffold 142000013386035 section 50 of 105, complete sequence
Position Repeat Coverage Repeat
3037 AC * 10 18/20 AC AC AC AC AC AC AT AC AC AA
4000 AC * 10 18/20 AC AC AC AC AC AC TC GC AC AC
45108 AT * 13 25/26 AT AT AC AT AT AT AT AT AT AT AT AT AT
65667 AT * 26 48/52 AT AT CT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT TA
69233 AT * 11 20/22 AT AT AT AT AA AT AC AT AT AT AT
76037 AT * 10 19/20 AT AT AT TT AT AT AT AT AT AT
78744 AC * 11 20/22 AC AC AC AC AC AC AC AG AA AC AC
90092 GT * 16 29/32 GT GT GT GT GT GT GT GT GT GT GT GT GC CT GT TT
111163 GT * 13 24/26 GT GT GT GT GC GA GT GT GT GT GT GT GT
112960 GT * 10 18/20 GT GT GT AT AT GT GT GT GT GT
115102 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AC GC TC
118886 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA TA CA GA
129965 GT * 10 19/20 GT GT GT GT GT GT GT GT GT GG
149037 GA * 10 18/20 GA GC GA GA GA GA GA GA GA TA
171800 AC * 15 27/30 AC AC AC AC AC AC AC AC AA AC AC AC GC AC GC
174707 AT * 18 34/36 AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT AT CT
216998 AT * 10 18/20 AT AT AT AC AT AT AT AT AT AG
222882 TG * 17 32/34 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TT TA
229196 AG * 10 18/20 AG AG AG AG AG AG AG AG AG GC
232776 TG * 12 23/24 TG TG TG TG TG TG TG TG TG TG TG CG
247473 TC * 11 20/22 TC CC TC TC TC TC TC AC TC TC TC
-----------------------------------------------------------------------------------------
Total sequence length......................... 254846
Total number of repeats detected.............. 21
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 0 1 1 4 1 1 3 1 0 0 0
15 to 19 1 0 0 0 1 0 1 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 1 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 6 0 1 1 5 1 2 4 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
6 AT + 0 TA = 6
1 AG + 1 GA + 0 CT + 1 TC = 3
4 GT + 2 TG + 1 CA + 5 AC = 12
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7300442|gb|AE003724.1|AE003724 Drosophila melanogaster genomic scaffold 142000013386035 section 49 of 105, complete sequence
Position Repeat Coverage Repeat
10575 CA * 18 33/36 CA GA CA CA CA CG CA CA CA CA CA CA CA CA CG CA CA CA
18198 AT * 11 20/22 AT CT AT GT AT AT AT AT AT AT AT
19014 GT * 13 24/26 GT GT GT GT GT GT GT GT GT AT GT GA GT
19235 CT * 12 22/24 CT CT CT CT CT CT CT CT TT CT GT CT
21255 GT * 12 22/24 GT GC GT GT GT GT AT GT GT GT GT GT
21283 GT * 12 22/24 GT GA GT GT GT GT AT GT GT GT GT GT
25015 TA * 11 20/22 TA TG TA TA TA TA TA TA TA TG TA
32406 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AC GC AT
42816 CA * 11 21/22 CA CA CA CA CA CA CA CA CA CA CC
62438 AG * 18 33/36 AG AG GG AG AG AG AG AG AG AG AG AG AG AG AG GG AA AG
67681 GT * 12 22/24 GT GT GT GT CT GT GT GT GT AT GT GT
69806 AC * 10 18/20 AC AC AC AC AC AC AC AC AT AT
69920 CT * 10 19/20 CT CT CT CT CT TT CT CT CT CT
72751 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TG TG TG TG CC TT
74179 AC * 12 22/24 AC TC AT AC AC AC AC AC AC AC AC AC
74727 CA * 11 20/22 CA CA CA CA CA CA CA CA CA AT CA
83737 AT * 11 20/22 AT AT TT AC AT AT AT AT AT AT AT
92426 CA * 13 24/26 CA CT GA CA CA CA CA CA CA CA CA CA CA
93260 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA CC TA
94473 GT * 11 20/22 GT GT GT AC GT GT GT GT GT GT GT
98652 GT * 11 20/22 GT GT GT GT GT GT GT GT AT GT GC
99943 TG * 17 32/34 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG CT
100115 TG * 15 27/30 TG TG TG TG TT TG TT TG TG TG TG TG TG TG GG
100357 CA * 11 20/22 CA CA CT CA CA CA CA CA CA CA GA
106555 CA * 11 20/22 CA TT CA CA CA CA CA CA CA CA CA
111714 TC * 10 18/20 TC TT TC TC TC TT TC TC TC TC
119196 AC * 12 23/24 AC AC AC AC AC AC AC AC AC AC AC AG
122297 GT * 10 18/20 GT GT GT GT GT GT GT GT GT CG
132243 AC * 11 20/22 AC AC AC AG AC AC AC AC AC AG AC
140334 CT * 11 20/22 CT CC CC CT CT CT CT CT CT CT CT
153549 CT * 15 27/30 CT CA CT CT CT CT CT CT CT CC CT CT CT CT GT
173450 GT * 11 21/22 GT GT GT GT GT GT GT GT GT GT GG
199925 AT * 10 18/20 AT AC AT AC AT AT AT AT AT AT
204238 TG * 10 19/20 TG TG TG TC TG TG TG TG TG TG
206222 AT * 10 18/20 AT AT CT AT GT AT AT AT AT AT
206752 TA * 16 29/32 TA TA TA TA TC TA TA TA TT TA TA TA TA TA TA TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 232361
Total number of repeats detected.............. 36
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 1 0 0 5 6 1 8 1 3 0 0
15 to 19 0 1 1 0 0 1 3 0 0 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 2 1 0 5 7 4 8 1 4 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 2 TA = 6
1 AG + 0 GA + 4 CT + 1 TC = 6
8 GT + 4 TG + 7 CA + 5 AC = 24
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7300414|gb|AE003723.1|AE003723 Drosophila melanogaster genomic scaffold 142000013386035 section 48 of 105, complete sequence
Position Repeat Coverage Repeat
50673 TG * 12 22/24 TG TG TG TG TG TG CG TT TG TG TG TG
77153 AT * 11 20/22 AT AT AC AC AT AT AT AT AT AT AT
87750 CA * 11 20/22 CA CA CA CG CA CA CA CA CA CG CA
90852 GT * 11 21/22 GT GT GT GT GT GT GT GT GT GT TT
91121 GA * 11 20/22 GA AA GA GA GA GA TA GA GA GA GA
91605 AC * 12 22/24 AC AG TC AC AC AC AC AC AC AC AC AC
97919 TA * 11 20/22 TA TA TA TA TA TA GA CA TA TA TA
101222 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TT TT
104331 AG * 18 33/36 AG AG AG GC AG AG AG AG AG AG AG AG AG AG AG GG AG AG
108909 TA * 11 20/22 TA TA TA TA CA TA TA TA AA TA TA
123328 AT * 13 24/26 AT AT AT AT AT AT AC AT AT AT AT AT AA
132949 AG * 10 18/20 AG AG AG AG AG AG AG AA AG AT
153132 AC * 16 29/32 AC AC AC AC AC AC AC AC AC AC AC GC AC AC AT CC
155699 AC * 12 22/24 AC AA AC AC AC AC AC AC AC AC AC AT
155997 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TT TG AG
157914 TG * 17 31/34 TG TG CG TG TG TG TG TG TG TG TG TG TG TG AT TG TG
166592 AT * 11 20/22 AT AT AT AT AT AT AT AT AT TT TT
170465 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG TT TC
171739 AT * 11 20/22 AT AT AT GC AT AT AT AT AT AT AT
179385 GT * 10 18/20 GT GT GT GT GT GT TT TT GT GT
183935 TA * 10 18/20 TA TA TA TG TA TA TG TA TA TA
189964 TC * 11 20/22 TC TC TC TC TC TC TC TC TC TT TA
192933 AT * 15 27/30 AT AT AT AT AT AT AT AT AT AT AT AG AT CT GT
200745 GT * 10 18/20 GT GT GT GT GT GT GT GT GA AT
204856 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT GT AG
207768 GT * 21 38/42 GT GC GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GG GC CT
214491 TA * 12 22/24 TA TA CA TA CA TA TA TA TA TA TA TA
216285 CA * 11 20/22 CA CA CA CA CA CA CA AA AA CA CA
217120 CA * 12 22/24 CA CG CG CA CA CA CA CA CA CA CA CA
217730 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG CG TT
226724 CA * 10 18/20 CA CA GA CA CA GA CA CA CA CA
241030 CT * 19 35/38 CT CG CT CT CT CT CT CT CT CT CT CT CT CT TT CT CT CT CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 253747
Total number of repeats detected.............. 32
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 4 1 1 2 4 5 4 1 0 0 0
15 to 19 1 0 1 0 1 0 1 0 0 1 0 0
20 to 24 0 0 0 0 0 0 0 1 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 4 2 1 3 4 6 5 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 4 TA = 9
2 AG + 1 GA + 1 CT + 1 TC = 5
5 GT + 6 TG + 4 CA + 3 AC = 18
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7300390|gb|AE003722.1|AE003722 Drosophila melanogaster genomic scaffold 142000013386035 section 47 of 105, complete sequence
Position Repeat Coverage Repeat
21771 AT * 15 28/30 AT AT AT AT AA AT AT AT AG AT AT AT AT AT AT
27214 CA * 11 20/22 CA CA CA CA CA GA CA CA CA CG CA
28838 AT * 11 20/22 AT AT AT AT AT AT AT AT AG AT CT
32010 AG * 11 20/22 AG AG AG AG AG CG AG GG AG AG AG
32077 GA * 10 18/20 GA GA GA GA GA CA GA CA GA GA
33028 TG * 15 27/30 TG TG TG TG TG TG TG TG TT TG TG TG TG CG CG
33334 GT * 11 20/22 GT GT GT GT GT GT GT CT GT CT GT
33365 TG * 10 18/20 TG TG CG TG TG TG TA TG TG TG
34107 TA * 24 44/48 TA TA TA TA TA TA TA TG CA TA TA TA TA TA TA TA TA TA TA TA TA TT CA TA
34674 GT * 11 20/22 GT TT GT GT GT GT GC GT GT GT GT
34964 TG * 15 27/30 TG TG TG TG TT TG TG TG TG TG TG TG TT TG TC
35867 TG * 18 33/36 TG TG TG TG TG TG TG TG TG TG TC TG TG TG CG GG TG TG
35947 AG * 11 21/22 AG AG AG AG AG AG AG AG AG AG TG
38033 GT * 17 31/34 GT GT GT GT GT GT GT GT GT GT GT GT TT AT GC GT GT
39352 AT * 10 18/20 AT AT AT AT AT AT AT AT TT AA
43417 AG * 11 20/22 AG AG AG AG AG CG AC AG AG AG AG
43674 TG * 20 37/40 TG AG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG GG TG GG
51631 GA * 16 29/32 GA AA GA AA GA GA GA GA GA GA GA GA GA GA GC GA
51713 TG * 11 21/22 TG TG TG TG TG TG TG TG TG TT TG
56326 AT * 11 21/22 AT AT AT AT TT AT AT AT AT AT AT
57790 TA * 10 19/20 TA TA TA TA TA TG TA TA TA TA
57841 TG * 10 18/20 TG AG TG TG TG TG TG AG TG TG
59649 TG * 11 20/22 TG AG TG TG TG TG TG TG TG TG TC
60039 GT * 15 28/30 GT GT GT GT GT GT GT GT GT GT GT GT AT GA GT
61647 TG * 11 20/22 TG TA TA TG TG TG TG TG TG TG TG
63404 GT * 10 18/20 GT GA GT GT GT GT GT GC GT GT
64985 AC * 10 19/20 AC AC AC GC AC AC AC AC AC AC
69157 CA * 19 35/38 CA CA CA CA CA CA CG CG CA CA CA CA CA CA CA CA CA GA CA
70311 AT * 10 18/20 AT AC AT AT AT AT AT AT AT AA
88999 CA * 10 18/20 CA AA CA CA CA CA CA CA CA CG
89411 GT * 10 18/20 GT GT GT GT GT GT GT GT GA GC
100654 TA * 13 24/26 TA TG TA TA TA TA TA TA TA TG TA TA TA
133235 GT * 15 28/30 GT GT GC GT GT GT GT GT GT GT GT GT GT GC GT
134780 AG * 13 24/26 AG AG AG AG AG AG AG AG AG AG GG AG TG
135098 GT * 12 23/24 GT GT GT GT GT GT GT GT GT GT GT GC
137271 TG * 15 27/30 TG TG TG TG CG TG TG TG TG TG TG TG TG TG CT
144804 CA * 10 18/20 CA CA CA CA CA CA TT CA CA CA
146531 GT * 12 22/24 GT GC AT GT GT GT GT GT GT GT GT GT
157066 AT * 13 24/26 AT AC AT AT AT AT AT AT GT AT AT AT AT
161602 CA * 16 29/32 CA CA CA CA CA CA CA CA CA CA CA CA CA CA AG CG
163478 CA * 19 35/38 CA CA CA CG AA CA CA CA CA CA CA CA CA CA CA CA CA CA GA
171449 AC * 12 23/24 AC AC AC AC AC AC AC GC AC AC AC AC
172727 CA * 13 25/26 CA CA CG CA CA CA CA CA CA CA CA CA CA
173656 AC * 15 28/30 AC AA AC CC AC AC AC AC AC AC AC AC AC AC AC
178635 AC * 11 20/22 AC AC AC AC AC AC AC CC AC AG AC
183577 AC * 16 29/32 AC CC AC AC AC AC TC AC AC AC AC AC AC AC AG AC
184987 AT * 13 24/26 AT AT AT AT AT AT AT AT AT TT AT AT TT
199310 GT * 12 23/24 GT GT GC GT GT GT GT GT GT GT GT GT
200234 TC * 13 24/26 TC TC TC TT TC TC TC TC TC TC TC TC TG
203618 TA * 10 19/20 TA TA TA TA TA TA TA TA TA TT
203639 TA * 10 18/20 TA TG TC TA TA TA TA TA TA TA
220288 AT * 10 18/20 AT AT TT AT AT AT AT GT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 222917
Total number of repeats detected.............. 52
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 7 4 4 1 3 4 5 7 1 0 0 0
15 to 19 1 0 0 1 2 3 4 3 0 0 0 0
20 to 24 0 1 0 0 0 0 1 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 8 5 4 2 5 7 10 10 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
8 AT + 5 TA = 13
4 AG + 2 GA + 0 CT + 1 TC = 7
10 GT + 10 TG + 7 CA + 5 AC = 32
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7300335|gb|AE003721.1|AE003721 Drosophila melanogaster genomic scaffold 142000013386035 section 46 of 105, complete sequence
Position Repeat Coverage Repeat
7473 GT * 10 18/20 GT GT GC GT GT GT GT GT GT GC
7758 AT * 15 27/30 AT AT AT AT AT AT AA AT AT AT AT AT AT TT AA
8788 TG * 13 24/26 TG CG TG TG TG TG TG TG TG TG TG TC TG
17252 GT * 10 19/20 GT GT GT GT GT GT GT GT GT GC
18390 AT * 13 24/26 AT AT AG AA AT AT AT AT AT AT AT AT AT
18855 AT * 12 22/24 AT AT AT AT AT AT AT AT AT AT AT TA
30899 AG * 10 18/20 AG AC AG AG AG AG AT AG AG AG
32468 TG * 14 26/28 TG TG TG TG TG TG TG TG TG GG TG TG TG TA
32730 AT * 11 20/22 AT TT AT TT AT AT AT AT AT AT AT
75676 AT * 15 27/30 AT AT AT AC AT AT AT AT AT AT AT AT AT AT TC
83440 TG * 10 18/20 TG CG TG TG TG TG TG TG TT TG
84623 AC * 16 29/32 AC TC AC AC AC AC AC AC AT AC AC AC AC AC AC AA
88795 CA * 10 18/20 CA CA GA CA CA CA CA CA CA CG
89156 AT * 15 28/30 AT AT AT AT AC GT AT AT AT AT AT AT AT AT AT
101055 GT * 13 24/26 GT GT GG GT GA GT GT GT GT GT GT GT GT
101510 CA * 12 22/24 CA GT CA CA CA CA CA CA CA CA CA CA
103676 TG * 16 30/32 TG TG TG TG TG TG TG TG TG TG TG TG TG TA TA TG
115177 AT * 11 20/22 AT AT AA GT AT AT AT AT AT AT AT
134238 TA * 11 20/22 TA TA TA TA AA TA TA TA TA TA CA
136733 AT * 15 28/30 AT AT AT AT AT AT AT AT AT GT AT AT AT AC AT
149513 GT * 13 24/26 GT GT GT GT GT AT GT GT GT GT GT GT GA
151031 AG * 10 18/20 AG AG TG AG AG AG AG AG TG AG
153534 TA * 10 18/20 TA TA TA TA CA TG TA TA TA TA
153701 GT * 11 21/22 GT GT GT GT GC GT GT GT GT GT GT
170553 GT * 11 20/22 GT GT AT AT GT GT GT GT GT GT GT
172750 GT * 10 18/20 GT TT GT GT GT GT GT GT GT TT
175768 GT * 13 24/26 GT GT GT GT GT GC GT GT GT GT AT GT GT
188467 AC * 14 26/28 AC AC AC AC AC AC AC AC AC CC AT AC AC AC
195488 TG * 10 18/20 TG TG TG TA TG TG TG TG TT TG
198150 GT * 13 24/26 GT GT GT GT GT GT GA GT GT GT GT GT GA
211034 AC * 10 18/20 AC AC AC AC AG AC AC AC AC AA
-----------------------------------------------------------------------------------------
Total sequence length......................... 224896
Total number of repeats detected.............. 31
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 2 2 0 2 2 4 9 0 0 0 0
15 to 19 4 0 0 0 1 0 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 8 2 2 0 3 2 5 9 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
8 AT + 2 TA = 10
2 AG + 0 GA + 0 CT + 0 TC = 2
9 GT + 5 TG + 2 CA + 3 AC = 19
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7300322|gb|AE003720.1|AE003720 Drosophila melanogaster genomic scaffold 142000013386035 section 45 of 105, complete sequence
Position Repeat Coverage Repeat
6720 AG * 12 22/24 AG AG AG AG TG CG AG AG AG AG AG AG
10125 AT * 11 20/22 AT AT AT AC AT AT AT AA AT AT AT
12064 TA * 16 30/32 TA TA CA TA TT TA TA TA TA TA TA TA TA TA TA TA
13229 TG * 16 29/32 TG TG TG TG TG TG TG TG TG TG TG TG AC TG TG TC
15495 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC AC AT GC
22751 GT * 13 24/26 GT GT GT GC GT GT GT GT GT GA GT GT GT
25107 TG * 12 22/24 TG TG TA TC TG TG TG TG TG TG TG TG
49134 GT * 11 20/22 GT GT CT CT GT GT GT GT GT GT GT
56335 AC * 11 20/22 AC AC AA AC AC AC TC AC AC AC AC
60213 AC * 11 20/22 AC TC GC AC AC AC AC AC AC AC AC
60845 CT * 17 31/34 CT AT CT CT CT CT CT CT CT CT CC CT CT CT CT GT CT
61813 AC * 16 29/32 AC AC AC AC AC AC AC AC AC AC AC AC AC TC AC TA
63057 CT * 10 18/20 CT CT CT CT AT CT CT CT CT TT
69273 TG * 15 27/30 TG TG TA TG TG TG TG TG TG TG TG TG TA TG TT
70840 CA * 12 22/24 CA CA AC CA CA CA CA CA CA CA CA CA
72226 AT * 11 20/22 AT AT AT AT AA AT AT AT AT AT AA
78243 AT * 10 18/20 AT AT AA GT AT AT AT AT AT AT
78739 AC * 13 24/26 AC AT AC AC AC AC AC AC AC AC AC GC AC
79089 GT * 13 24/26 GT GT GT GT GC GT GT GT GT GC GT GT GT
81057 TA * 13 24/26 TA TA TA TA TA TA TA TA AA TA TA AA TA
113104 CT * 12 22/24 CT CT CT CT CT CT CG CT AT CT CT CT
115450 AT * 13 24/26 AT AA AT AT AT AT AT AT AC AT AT AT AT
116965 AC * 11 20/22 AC CC AC AC AC AC AC AC AC AC AA
134227 TA * 10 18/20 TA TA TA TG TA CA TA TA TA TA
152919 GT * 12 22/24 GT GC GA GT GT GT GT GT GT GT GT GT
153298 TG * 13 24/26 TG TG TG TG TG TG TG TA TG TG TG TT TG
158519 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TG TG TG TG GG CC
164333 AT * 10 18/20 AT GT AT AT AT AC AT AT AT AT
165071 GT * 13 25/26 GT GT GT GT TT GT GT GT GT GT GT GT GT
175466 CT * 13 25/26 CT CT CT CT CT CC CT CT CT CT CT CT CT
178216 TG * 12 22/24 TG TG TG TG TG TG TG TG TG GG TG CG
178549 AT * 10 18/20 AT AT AT AT CT AT AT AG AT AT
198580 AT * 20 37/40 AT AC AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT AC AT
210736 TA * 11 21/22 TA TA TA TA TA TA TA TA TA TA TT
213243 TC * 10 18/20 TC TC TC TC TC TC TC TC TC AA
215152 CA * 10 18/20 CA GC CA CA CA CA CA CA CA CA
220849 CA * 10 19/20 CA CA AA CA CA CA CA CA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 224263
Total number of repeats detected.............. 37
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 6 3 1 0 5 3 3 5 1 3 0 0
15 to 19 0 1 0 0 1 0 3 0 0 1 0 0
20 to 24 1 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 7 4 1 0 6 3 6 5 1 4 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
7 AT + 4 TA = 11
1 AG + 0 GA + 4 CT + 1 TC = 6
5 GT + 6 TG + 3 CA + 6 AC = 20
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7300296|gb|AE003719.1|AE003719 Drosophila melanogaster genomic scaffold 142000013386035 section 44 of 105, complete sequence
Position Repeat Coverage Repeat
16626 CA * 10 18/20 CA CC CA TA CA CA CA CA CA CA
16758 GT * 12 22/24 GT GT GC GT GT GT GT GT GT GT GT TT
17047 AC * 10 18/20 AC AC AC AC AC AC AC GC GC AC
17700 CA * 18 34/36 CA CG CA CA CC CA CA CA CA CA CA CA CA CA CA CA CA CA
32098 AT * 12 23/24 AT AT AT AT AT AT AT AT GT AT AT AT
38080 CA * 10 18/20 CA CA CA CT CA CA CA CA CA CT
40314 GT * 13 24/26 GT GT GT GT GT GT GT CT GT GT GT GG GT
49703 TA * 14 26/28 TA TA TA AG TA TA TA TA TA TA TA TA TA TA
50429 AT * 11 20/22 AT AT AT AT GT AT AT GT AT AT AT
57038 AC * 10 18/20 AC AC AC AC AC AC GC AG AC AC
57609 AG * 10 18/20 AG AG AG AG AG AG AG AG AG CA
105083 CT * 10 19/20 CT CT CT TT CT CT CT CT CT CT
118791 AC * 11 20/22 AC AC AG AC AC AC GC AC AC AC AC
124699 CA * 12 22/24 CA CA CT CA CT CA CA CA CA CA CA CA
129715 TA * 12 22/24 TA AA TA AA TA TA TA TA TA TA TA TA
140329 CA * 11 20/22 CA CT CA CA CA CA CA AA CA CA CA
155985 TA * 10 18/20 TA TA TA TG TA TG TA TA TA TA
160621 TA * 13 24/26 TA TA TG TA TA TA TA TA TA TT TA TA TA
174953 AG * 12 23/24 AG AG AG AG AC AG AG AG AG AG AG AG
178163 CA * 13 24/26 CA CA CT TA CA CA CA CA CA CA CA CA CA
178248 AC * 11 20/22 AC AC AC AG AC AC AC AC AC AC AT
178890 GT * 10 18/20 GT GT GT GC GT GT GT GT GT GC
179145 CA * 10 18/20 CA CA CA CA CA GA CA CA CG CA
179216 CA * 12 22/24 CA AA CA CT CA CA CA CA CA CA CA CA
180951 CA * 10 18/20 CA CC CA CT CA CA CA CA CA CA
182496 GT * 22 40/44 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT TG CT GT TT GT GT
185370 GT * 10 18/20 GT GT GT GT GT GT GT GA GT GG
185859 GA * 11 20/22 GA GA GA GA GA GA GA GA TA GT GA
188160 GT * 12 22/24 GT GG GT GT GT GT GT GT TT GT GT GT
190418 TG * 11 20/22 TG TG TG TG TC TG TG TG CG TG TG
191613 TA * 14 26/28 TA TA TA TA TA TA TG TA TA TA TA TA TA TT
195538 GT * 19 35/38 GT GT GT GT GT GT GT GT GT GT GT GT GG GT GC TT GT GT GT
197410 TA * 10 18/20 TA TA TA TC TA TA TA TA TA TG
197444 TA * 10 19/20 TA TA TA TA TA TA TG TA TA TA
197884 CT * 12 22/24 CT CT CT CT CT CT CT CT CT CT CA CA
199411 GT * 12 22/24 GT GT GT GT GC GT TT GT GT GT GT GT
199584 AG * 10 18/20 AG AG AG AG AG AG AG AG AC TG
203149 TG * 10 18/20 TG TG TG TG TG TG CA TG TG TG
203245 GA * 10 18/20 GA GT GA GA GA GA GA GA GA GG
210120 AC * 16 29/32 AC AC AC AC AC AC AC AC AC AC AC AC AG TC AT AC
213628 TG * 17 31/34 TG TG TG TG TG TG TG TG TG TG TG TG TG CG TG TG GC
-----------------------------------------------------------------------------------------
Total sequence length......................... 218434
Total number of repeats detected.............. 41
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 7 3 2 4 8 2 6 0 2 0 0
15 to 19 0 0 0 0 1 1 1 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 1 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 7 3 2 5 9 3 8 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 7 TA = 9
3 AG + 2 GA + 2 CT + 0 TC = 7
8 GT + 3 TG + 9 CA + 5 AC = 25
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7300262|gb|AE003718.1|AE003718 Drosophila melanogaster genomic scaffold 142000013386035 section 43 of 105, complete sequence
Position Repeat Coverage Repeat
18305 CA * 11 20/22 CA GA CA AA CA CA CA CA CA CA CA
19956 TG * 10 18/20 TG TG TA TA TG TG TG TG TG TG
29945 TA * 14 26/28 TA TA TA TA TA TA TA TA TA TA TA TA TA GC
31840 TG * 10 18/20 TG TG TG TA TG TG TG TT TG TG
34187 CA * 12 22/24 CA CA AA CA CA CA CA CA CA CA CA TA
34224 TG * 11 20/22 TG TG TG TG TG TG TG TG TT GG TG
38916 TG * 11 20/22 TG TG TT TG TG TG TA TG TG TG TG
39692 TG * 12 22/24 TG TG TG TG TG TA TG TG TG TG TG AG
60209 CA * 10 18/20 CA CG CA AA CA CA CA CA CA CA
64428 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA CA GT
68580 CA * 10 18/20 CA CA CA CA CA CT CA CA CA CG
82188 GT * 11 21/22 GT GT GT GT GT GT GT GT GT GT AT
90479 TG * 11 20/22 TG TC TG TC TG TG TG TG TG TG TG
90658 TC * 16 29/32 TC TC CT TC TC TC TC TC TC TC TC TC TC TC TT TC
91498 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AT GC AC
91980 CT * 12 22/24 CT CT CT CT CA TT CT CT CT CT CT CT
93211 AC * 10 18/20 AC AC AA GC AC AC AC AC AC AC
96514 AC * 10 18/20 AC AC AC AC AC AT AC AC AT AC
101260 TC * 13 24/26 TC TT TC TC TC TC TC TC TC TC TC TC TT
102902 AT * 18 34/36 AT AA AT AT AT AT AT AT AT AT TT AT AT AT AT AT AT AT
105617 TG * 10 18/20 TG TG GG TA TG TG TG TG TG TG
109761 CT * 10 18/20 CT CT CT CT CT CT CT CT CT TA
116783 CT * 10 18/20 CT CT CT CT CT CT CT CT CT TA
117940 CA * 14 26/28 CA CA CT CA CA CA CA CA CA CA CA CA CT CA
131999 TA * 17 31/34 TA TC TA TA TA TA TA TA TG TA TA TA TA TA TA TA TC
138362 GT * 10 18/20 GT GT GT GC GT GT GT GT GT GG
167829 TG * 12 22/24 TG TG CG TG TG TG TG TG TG TG TG TT
188022 GA * 11 20/22 GA GA GA GA GA GA GA GA TG GA GA
216530 TG * 10 18/20 TG TT TG AG TG TG TG TG TG TG
228301 GT * 10 18/20 GT GT GT GT GT GT GT GT GT TG
235803 GT * 16 29/32 GT AT CT GT GT GT GT GT GT GT GT GT GT GT GT GA
237219 TA * 13 24/26 TA TA TA TA TA TA TA TA TG TA TA TA AA
244183 TG * 12 22/24 TG TC TG TG TG TG TG TG TG TG TG GG
245427 CA * 10 18/20 CA CA CA CA CA GA TA CA CA CA
249156 CA * 12 22/24 CA CG CA CA CA CA CA TA CA CA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 253172
Total number of repeats detected.............. 35
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 2 0 1 3 8 10 3 1 3 0 0
15 to 19 1 1 0 0 0 0 0 1 1 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 3 0 1 3 8 10 4 2 3 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 3 TA = 4
0 AG + 1 GA + 3 CT + 2 TC = 6
4 GT + 10 TG + 8 CA + 3 AC = 25
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7300241|gb|AE003717.1|AE003717 Drosophila melanogaster genomic scaffold 142000013386035 section 42 of 105, complete sequence
Position Repeat Coverage Repeat
9082 TG * 17 31/34 TG TG TG TC TG TG CG TG TG TG TG TG TG TG TA TG TG
11273 AC * 16 29/32 AC AT AC AC AC AC AC AC AC AC AC TC AC AC AA AC
16976 AG * 11 21/22 AG AG AG AG AG AG AG AG AG AG AT
35496 TA * 13 24/26 TA TA TA TA TA TA TA TG TA TA TA TC TA
37833 TG * 13 24/26 TG TG CG TG TG TG TG AG TG TG TG TG TG
48751 TG * 10 18/20 TG TG TC TG TG TG TG TG CG TG
93400 TA * 12 22/24 TA TA TA TA TA TT TA TA TA TA TA TG
108404 AC * 11 20/22 AC AC AC AC AC AC CC AT AC AC AC
114886 CA * 15 27/30 CA CA CA TA CA CA CA CA CA CA CA TA CA CA CC
117451 AC * 10 18/20 AC AC AT AC AC AC AC AC AC AA
124463 GT * 10 18/20 GT GT GT GT GT TT GT GT GT TT
141125 AT * 16 29/32 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC CA
141191 TA * 10 18/20 TA TA TA TA AA CA TA TA TA TA
142128 TA * 10 18/20 TA TA TA CA TA TA TC TA TA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 217756
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 4 1 0 2 0 2 1 0 0 0 0
15 to 19 1 0 0 0 1 1 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 4 1 0 3 1 3 1 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 4 TA = 5
1 AG + 0 GA + 0 CT + 0 TC = 1
1 GT + 3 TG + 1 CA + 3 AC = 8
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7300211|gb|AE003716.1|AE003716 Drosophila melanogaster genomic scaffold 142000013386035 section 41 of 105, complete sequence
Position Repeat Coverage Repeat
33178 TA * 10 18/20 TA TA TA TA AA TA TA CA TA TA
34433 CA * 10 18/20 CA CA CA CA TA CA CA AA CA CA
37667 AC * 10 18/20 AC AC AC AC AC AC GC AG AC AC
47256 AG * 13 24/26 AG AG AG AG AG AG AG AG AG AG AA AG CG
87475 AT * 10 18/20 AT AA AT AT AT AT AT AT AT GT
96442 CA * 11 21/22 CA CA CA CA CA CA CA CA CA CA CC
122830 TA * 10 18/20 TA TA TA TA TA TA TG TA TA TG
123041 TA * 10 18/20 TA TA TA TA TA TA TA TA TA GT
125721 TA * 15 28/30 TA TA TA TA TA TA TA TA TA TA TA TA TA TC AA
139529 AT * 12 22/24 AT AT AT AT AT AT AT AT AT AT GT AC
143958 TA * 16 29/32 TA AA TA TA TA TA TA TA TA TA TA TA TA TA TT TT
150787 TA * 11 20/22 TA TA TA TA TT TA TA TA TA TT TA
157781 AC * 11 20/22 AC AC AC AC AC AC AC AC AG AC AG
159221 AC * 11 20/22 AC AC AC AC AC AC AC AC TC AC GC
215109 AC * 12 22/24 AC AC AC AC AC AC AC AC AC GC AT AC
220913 GT * 10 18/20 GT AT GT AT GT GT GT GT GT GT
221104 GA * 12 22/24 GA GA TG GA GA GA GA GA GA GA GA GA
-----------------------------------------------------------------------------------------
Total sequence length......................... 225968
Total number of repeats detected.............. 17
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 4 1 1 4 2 0 1 0 0 0 0
15 to 19 0 2 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 6 1 1 4 2 0 1 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 6 TA = 8
1 AG + 1 GA + 0 CT + 0 TC = 2
1 GT + 0 TG + 2 CA + 4 AC = 7
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7300193|gb|AE003715.1|AE003715 Drosophila melanogaster genomic scaffold 142000013386035 section 40 of 105, complete sequence
Position Repeat Coverage Repeat
1091 TA * 10 18/20 TA TA TA TA TC CA TA TA TA TA
133366 GT * 10 18/20 GT GG GT GT GG GT GT GT GT GT
134652 GT * 22 40/44 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GC CT CC
145034 CA * 12 22/24 CA CT CA CT CA CA CA CA CA CA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 223098
Total number of repeats detected.............. 4
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 1 0 0 0 1 0 1 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 1 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 1 0 0 0 1 0 2 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 1 TA = 1
0 AG + 0 GA + 0 CT + 0 TC = 0
2 GT + 0 TG + 1 CA + 0 AC = 3
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7300166|gb|AE003714.1|AE003714 Drosophila melanogaster genomic scaffold 142000013386035 section 39 of 105, complete sequence
Position Repeat Coverage Repeat
8826 TG * 22 40/44 TG TA TG CG TG TG TG TG TG TG TG TG TG TG CG TG TG TG TG TG TG TT
15632 CA * 10 18/20 CA CT CG CA CA CA CA CA CA CA
15981 TG * 21 38/42 TG TG TG TG TG TG TG TG TG TG TG TG TG CG TG TG TG AG TA AG TG
17376 TG * 12 22/24 TG TA AG TG TG TG TG TG TG TG TG TG
34437 AT * 11 20/22 AT AT AT AC AT AC AT AT AT AT AT
34568 GT * 10 18/20 GT GT GT GT AT CT GT GT GT GT
61652 TC * 10 18/20 TC TT TC TC TC TC TC TA TC TC
75264 TA * 11 20/22 TA TA TA TG TA TA TA TA TA TA TT
98478 TG * 12 22/24 TG TA TG TG TG TG TG TG TG TG TG TT
99961 TG * 13 24/26 TG CG TG AG TG TG TG TG TG TG TG TG TG
110598 AT * 11 20/22 AT AT AT AT AG AT AT GT AT AT AT
113304 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA CT CT
123607 TG * 11 20/22 TG AG TG TG TG TG TG TG TG TG GG
126292 AC * 10 19/20 AC AC AC AC AC TC AC AC AC AC
127775 CT * 10 18/20 CT CG CT CT CT CT CT CT TT CT
128517 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CT CC
137015 AT * 12 22/24 AT AT AT AT TT AT TT AT AT AT AT AT
141916 TG * 10 18/20 TG TG TG TG TG TG TG TG TG CT
146362 TG * 15 28/30 TG AG TG TG TG TG TG TG TG TG TG TG TG TG TA
147918 TG * 10 18/20 TG TG TG TG TG TG TG AG TG AG
148022 CT * 15 27/30 CT CA CG CT CT CT CT CT CT CT CT CT CT CT CA
158793 AG * 13 25/26 AG AG AG AG AG AG AG AG AG AG AG AG AT
162845 AT * 11 20/22 AT AT AC AT AT AT AT TT AT AT AT
167855 CA * 13 24/26 CA CA TA CA CA CA CA CA CA CA CA CA CT
207462 TA * 10 18/20 TA TA TA TA AA TA TA TA TA TT
-----------------------------------------------------------------------------------------
Total sequence length......................... 231403
Total number of repeats detected.............. 25
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 2 1 0 1 4 6 1 1 1 0 0
15 to 19 0 0 0 0 0 0 1 0 0 1 0 0
20 to 24 0 0 0 0 0 0 2 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 2 1 0 1 4 9 1 1 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 2 TA = 6
1 AG + 0 GA + 2 CT + 1 TC = 4
1 GT + 9 TG + 4 CA + 1 AC = 15
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7300133|gb|AE003713.1|AE003713 Drosophila melanogaster genomic scaffold 142000013386035 section 38 of 105, complete sequence
Position Repeat Coverage Repeat
29780 TC * 18 33/36 TC TC TG TC TC TC TC TC TC TC TC TC TC TC CC TG TC TC
39809 TG * 13 25/26 TG TG TG TG TG TG TG TG TG TG TG TG GG
40183 GT * 12 23/24 GT GT GT GT GT GT GT GT GT GT GT GC
42179 AT * 10 18/20 AT AG AT AT AT AT AT AT AT AC
46799 AT * 10 18/20 AT AT AT AT AT AC AT AC AT AT
50226 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CT CG
54418 AC * 11 20/22 AC AC AC AC AC AC AA AC AT AC AC
85722 TG * 12 22/24 TG TG AG TG TG TG TG TG TG TG TC TG
110978 CT * 11 20/22 CT CT CG CT CT CT TT CT CT CT CT
112126 AT * 10 18/20 AT AT CT AT AT AT AT AT AT CT
168736 CA * 11 20/22 CA CA CG CT CA CA CA CA CA CA CA
172845 CA * 11 20/22 CA CA CA CA CA CA CA CA CT CC CA
176293 CA * 10 18/20 CA CC CA CA CA CA CG CA CA CA
176558 CA * 16 29/32 CA CA TA CA CA CA CA CA CA CA CG CA CA CA CA CT
179170 TG * 11 20/22 TG TG TG TG TG TC TG TG TG TC TG
181195 TA * 13 24/26 TA TA TA TA TA TA TA TG TA TA TA CA TA
193354 GT * 13 24/26 GT GC GT GT GT GT GT GT GT GT TT GT GT
195075 TA * 10 18/20 TA AA AA TA TA TA TA TA TA TA
197210 GT * 15 27/30 GT GT GT GT GT GT GT GT GT GT GT GT GT GG TG
202860 CA * 11 20/22 CA CT CA CA CA CA AA CA CA CA CA
224736 CA * 13 24/26 CA CA CA AC CA CA CA CA CA CA CA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 225844
Total number of repeats detected.............. 21
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 2 0 0 1 6 3 2 0 1 0 0
15 to 19 0 0 0 0 0 1 0 1 1 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 2 0 0 1 7 3 3 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 2 TA = 5
0 AG + 0 GA + 1 CT + 1 TC = 2
3 GT + 3 TG + 7 CA + 1 AC = 14
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7300108|gb|AE003712.1|AE003712 Drosophila melanogaster genomic scaffold 142000013386035 section 37 of 105, complete sequence
Position Repeat Coverage Repeat
28933 CA * 11 20/22 CA CC TA CA CA CA CA CA CA CA CA
39682 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CA TT
45243 AC * 11 20/22 AC AA AC AC AC AC AG AC AC AC AC
67280 CA * 10 18/20 CA CA CA CA CA CA CA CA CA TC
68515 TA * 11 20/22 TA TA TA TA TA CA TA TA CA TA TA
98311 AC * 14 26/28 AC AC AA AC TC AC AC AC AC AC AC AC AC AC
100869 AC * 10 18/20 AC AC AC AC AC AC GC AC AC AT
105525 GT * 16 29/32 GT GT GT GT GT GT GT AT GT GT GT GT GT TT GG GT
108645 GA * 10 18/20 GA CA TA GA GA GA GA GA GA GA
112062 CA * 11 20/22 CA CA AA CA CA CA CA CA TA CA CA
115629 TG * 10 18/20 TG TG TG TG TG TG TG TG GC TG
115830 TG * 10 19/20 TG TG TG TG TG TG TG TG AG TG
125420 CA * 11 20/22 CA CT CA CA CA CA CA CA CA CA CT
143664 AT * 10 18/20 AT AT AA AT AT AT AC AT AT AT
161756 CT * 11 20/22 CT CT CT AT AT CT CT CT CT CT CT
165290 TG * 10 18/20 TG TG TA TG TG TG TG TT TG TG
165613 CT * 10 18/20 CT CT TT CT CT CT CA CT CT CT
177433 TA * 17 31/34 TA TA TA TA TA TA AA TA TA TA TA TA TA TA TA GA TT
221840 TA * 11 20/22 TA TA TC TA AA TA TA TA TA TA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 226200
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 2 0 1 3 5 3 0 0 2 0 0
15 to 19 0 1 0 0 0 0 0 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 3 0 1 3 5 3 1 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 3 TA = 4
0 AG + 1 GA + 2 CT + 0 TC = 3
1 GT + 3 TG + 5 CA + 3 AC = 12
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7300075|gb|AE003711.1|AE003711 Drosophila melanogaster genomic scaffold 142000013386035 section 36 of 105, complete sequence
Position Repeat Coverage Repeat
41435 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT GC GA
44159 CT * 11 20/22 CT CT CT TT CT CT CA CT CT CT CT
77495 AT * 10 19/20 AT AT AT AT AT AT AT AT GT AT
80782 TA * 10 18/20 TA TA TA TA AA TA TA TA TA CA
94433 GA * 12 22/24 GA GC GA GA GA GA GG GA GA GA GA GA
96413 TG * 12 22/24 TG TG TA AG TG TG TG TG TG TG TG TG
107744 TA * 10 19/20 TA TA TA TA TA TA AA TA TA TA
108106 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AT TG
118597 TG * 14 26/28 TG TG TG TG TG TG TG TG TG TG TG TG AG TA
134875 TG * 11 20/22 TG TA CG TG TG TG TG TG TG TG TG
146239 CT * 10 18/20 CT GT CT CT CG CT CT CT CT CT
164226 TA * 10 18/20 TA CA TA TA TA TA TA TG TA TA
166567 TA * 15 27/30 TA TA TA TA TA TA TA CA TA CA TA TA TA TA TG
228231 TA * 11 21/22 TA TA TA TA TA TA CA TA TA TA TA
230366 AC * 10 19/20 AC AA AC AC AC AC AC AC AC AC
-----------------------------------------------------------------------------------------
Total sequence length......................... 236427
Total number of repeats detected.............. 15
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 4 0 1 1 0 3 1 0 2 0 0
15 to 19 0 1 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 5 0 1 1 0 3 1 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 5 TA = 7
0 AG + 1 GA + 2 CT + 0 TC = 3
1 GT + 3 TG + 0 CA + 1 AC = 5
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7300041|gb|AE003710.1|AE003710 Drosophila melanogaster genomic scaffold 142000013386035 section 35 of 105, complete sequence
Position Repeat Coverage Repeat
9322 GA * 11 20/22 GA GC GA GA GA GA GA GA GA GT GA
18808 TG * 12 22/24 TG TG TG TA TG AG TG TG TG TG TG TG
20442 CA * 13 25/26 CA CA CA CA CA CA CA CA CA CA CA CA CC
36570 CT * 11 20/22 CT AT CT CT CT CT CT CT CT CT CG
45219 GT * 10 18/20 GT GT TA GT GT GT GT GT GT GT
55738 TA * 12 23/24 TA TA TA TA TA TA TA TA TA TA TA TT
64167 CA * 13 24/26 CA GA CA CA CA CA CA CA CA CA CA CT CA
73981 CA * 11 20/22 CA TT CA CA CA CA CA CA CA CA CA
75051 GT * 17 32/34 GT GT GC GT GT GT GT GT GT GT GT GT GT GT CT GT GT
93788 CA * 10 18/20 CA AA CA CA CA CA CA CA TA CA
101782 CA * 10 18/20 CA CA CA CA CA CA CA CA TT CA
105594 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA CA AT
109288 GT * 11 20/22 GT GT GT AT GT GA GT GT GT GT GT
114432 AC * 13 24/26 AC AC GC AC AC AC AC AC AC AC AC AC TC
118520 AT * 11 20/22 AT AT AT AT AT AT AT AT GT AC AT
128555 TA * 10 18/20 TA TA TA TA CA TA TA TA TG TA
129437 GT * 10 18/20 GT GT GT GT GG GT GT GG GT GT
131328 GT * 12 22/24 GT GG GT GT GC GT GT GT GT GT GT GT
146795 AT * 10 18/20 AT CT AA AT AT AT AT AT AT AT
191650 AC * 11 20/22 AC AC AC AC AC AC AC AC AC GC AA
197274 AG * 13 24/26 AG AG AG CG AG CG AG AG AG AG AG AG AG
198360 TA * 13 25/26 TA TA TA TA TA TA TA TA TA GA TA TA TA
211671 GT * 10 19/20 GT GT GT GT GT GT GC GT GT GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 224939
Total number of repeats detected.............. 23
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 3 1 1 2 6 1 5 0 1 0 0
15 to 19 0 0 0 0 0 0 0 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 3 1 1 2 6 1 6 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 3 TA = 5
1 AG + 1 GA + 1 CT + 0 TC = 3
6 GT + 1 TG + 6 CA + 2 AC = 15
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7300026|gb|AE003709.1|AE003709 Drosophila melanogaster genomic scaffold 142000013386035 section 34 of 105, complete sequence
Position Repeat Coverage Repeat
18380 AT * 10 18/20 AT AT AT GT AT AT GT AT AT AT
21017 AT * 11 20/22 AT GT AT GT AT AT AT AT AT AT AT
42042 AG * 10 18/20 AG AG AG AG AG AG AC AG AG AC
46582 TA * 15 27/30 TA TA TA TA TA TA TA TA TA TA TA TA GA TG CA
78959 GT * 10 18/20 GT GT GC CT GT GT GT GT GT GT
78984 TG * 11 20/22 TG TG TC TG TG TG TG TG TG TG CG
84795 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT GA GC
92827 TA * 20 36/40 TA TA TA TA TA CA TA TA TA TA TA TA TA TA TA CA TA TA TC TG
94111 AT * 11 20/22 AT AT AT AC AT AT AT AT AT AT AC
94388 TA * 10 18/20 TA AA TA TA TA TA TA AA TA TA
128191 AT * 13 24/26 AT AT AT GT AT AT AT AT AT AT AT AT GT
133438 CA * 10 18/20 CA GA CA CA CA CA CT CA CA CA
134044 TG * 10 18/20 TG TC TG TG TG TG TG TG TG TC
137589 GT * 10 18/20 GT GT GT GT GT GT GT GT GA GA
138031 TG * 10 18/20 TG TA CG TG TG TG TG TG TG TG
168019 AC * 11 20/22 AC TC AC AC AC AC AC AC AC AC AA
168293 AC * 15 27/30 AC AC CA AC AC AC AC AC AC AC AC AC AC AC AT
182365 AC * 10 18/20 AC AC AC AC AC AC AC AC GA AC
186355 CT * 11 20/22 CT CT CT CT CT CT CT CT CT CT TA
193379 CT * 11 20/22 CT CT CT CT CT CT CT CT CT CT TA
193980 CT * 11 20/22 CT CT CT CT CT CT CT CT CT CT TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 223652
Total number of repeats detected.............. 21
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 1 1 0 2 1 3 3 0 3 0 0
15 to 19 0 1 0 0 1 0 0 0 0 0 0 0
20 to 24 0 1 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 3 1 0 3 1 3 3 0 3 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 3 TA = 7
1 AG + 0 GA + 3 CT + 0 TC = 4
3 GT + 3 TG + 1 CA + 3 AC = 10
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7299964|gb|AE003708.1|AE003708 Drosophila melanogaster genomic scaffold 142000013386035 section 33 of 105, complete sequence
Position Repeat Coverage Repeat
11088 AT * 13 25/26 AT AT AT AT TT AT AT AT AT AT AT AT AT
24931 AT * 10 19/20 AT AT AT AT AT AT AT AT AA AT
73209 AT * 10 18/20 AT AT GT GT AT AT AT AT AT AT
85676 AT * 13 24/26 AT TT AT AT AT AT AT AT AT AT GT AT AT
89349 CT * 11 20/22 CT CT TT CT TT CT CT CT CT CT CT
94245 CT * 11 20/22 CT CT CT CT CT CT CG TT CT CT CT
94926 GT * 20 36/40 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT AT GC AT GT GC
95943 TC * 12 22/24 TC TC TG TC TC GC TC TC TC TC TC TC
104924 AC * 20 36/40 AC AC AC AC AC AC AC AC AC AC AC AC GC AC AC AG AC AC CC AA
116657 TC * 17 31/34 TC TC TA TG TC TC TC TC TC TC TC TC TC TC TC TA TC
148061 CA * 10 18/20 CA CA CA CA CA CA GA CA CA TA
179242 TG * 10 18/20 TG TG TG TG TG CC TG TG TG TG
192664 AC * 11 21/22 AC AC AC AC AC AC AT AC AC AC AC
196726 TA * 11 20/22 TA TA TA TA TA TA AA TA TA AA TA
197767 AT * 10 18/20 AT AT AA AT AT AT AT AT AT TT
199438 CT * 12 22/24 CT CT CT CT CT CT CT CT CT CT TT AT
199586 TA * 11 20/22 TA TA TA TA CC TA TA TA TA TA TA
200368 TA * 16 29/32 TA TA AA TA TA TA TA TA TA TA TA TC TA TA TA TG
201517 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AT TC
204380 AC * 12 22/24 AC AC AC AC AC AC AA AA AC AC AC AC
212261 TG * 10 18/20 TG TG TG TG TG TG TT TG TG TT
219039 AC * 11 20/22 AC AC AC AC AC AC AC AC AT AC AG
220410 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CA GC
220753 GT * 10 18/20 GT TT GT GT GT GT GT TT GT GT
223277 AG * 21 38/42 AG AG AC AG AG AG AG AG AG AG AG AG AG AG AG AG AA AG TG GG AG
228530 AC * 11 20/22 AC AC AC AC AC AC AC AT GC AC AC
229838 AT * 10 18/20 AT AT TT AT AT AT AT GT AT AT
229971 TG * 13 24/26 TG AG TG TG TG TG TG TG TG TG TG AG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 235414
Total number of repeats detected.............. 28
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 7 2 0 0 4 2 3 1 1 3 0 0
15 to 19 0 1 0 0 0 0 0 0 1 0 0 0
20 to 24 0 0 1 0 1 0 0 1 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 7 3 1 0 5 2 3 2 2 3 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
7 AT + 3 TA = 10
1 AG + 0 GA + 3 CT + 2 TC = 6
2 GT + 3 TG + 2 CA + 5 AC = 12
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7299945|gb|AE003707.1|AE003707 Drosophila melanogaster genomic scaffold 142000013386035 section 32 of 105, complete sequence
Position Repeat Coverage Repeat
1099 AC * 11 20/22 AC GC AC AC AC AC AC AC AC AG AC
1831 CA * 10 18/20 CA CA TG CA CA CA CA CA CA CA
3238 TG * 12 22/24 TG CG TA TG TG TG TG TG TG TG TG TG
17522 TG * 10 18/20 TG TG TG TC TG TG GG TG TG TG
18026 GA * 17 31/34 GA GA GC GA AA GA GA GA GA GA GA GA GA GA GA AA GA
24933 TG * 18 33/36 TG TG TG TG TG TG TG TG TG TG TT TG TG TC TG TG TG AG
31514 TG * 10 18/20 TG TG TG TG TG TG TG TG TG GC
41062 AC * 10 19/20 AC AC AC AC AC AT AC AC AC AC
41298 TG * 13 24/26 TG AG TG TG TA TG TG TG TG TG TG TG TG
49414 GT * 11 20/22 GT GT GT GT GT GC GC GT GT GT GT
53226 TG * 13 25/26 TG TG TG TG TG TG TG TG TG TG TG TG GG
56774 CA * 11 20/22 CA CA CA CC CA CA CA CA CA CA GA
58717 GT * 14 26/28 GT GC CT GT GT GT GT GT GT GT GT GT GT GT
62291 AC * 16 29/32 AC AC AC AC AC AC AC AC AC AC TC GC AC AC AC AT
87064 AT * 12 22/24 AT GT AT AT AT AT AT AT AT AA AT AT
99801 TG * 10 18/20 TG TG CG TG TG TG TG TG TG GG
106407 AT * 11 20/22 AT AT AT AC AT AT AC AT AT AT AT
151745 CA * 13 25/26 CA CA CA CA CA CA CA CA CA CA CA CA AA
186378 AC * 11 21/22 AC AC AC AA AC AC AC AC AC AC AC
209175 AT * 10 19/20 AT AT AT AT AT AA AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 229655
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 0 0 0 3 3 6 2 0 0 0 0
15 to 19 0 0 0 1 1 0 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 0 0 1 4 3 7 2 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 0 TA = 3
0 AG + 1 GA + 0 CT + 0 TC = 1
2 GT + 7 TG + 3 CA + 4 AC = 16
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7299915|gb|AE003706.1|AE003706 Drosophila melanogaster genomic scaffold 142000013386035 section 31 of 105, complete sequence
Position Repeat Coverage Repeat
1282 TA * 20 37/40 TA TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TT TT
4496 AT * 12 22/24 AT AT AT AT GT AC AT AT AT AT AT AT
6471 AT * 13 24/26 AT AT AT AT AT AT AT CT AT AT AT AT GT
10418 AC * 10 18/20 AC CC GC AC AC AC AC AC AC AC
22531 CA * 18 33/36 CA CA CA CA TA CA CA CA CA CA CA CA CA CA CA CA CA GC
26290 AT * 10 18/20 AT AC AT AT AT AA AT AT AT AT
37149 TA * 11 20/22 TA TA TA TA TA TA TA TT TA TG TA
51254 AT * 31 56/62 AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AA GT TC AT
60551 GT * 13 24/26 GT GC GT GT GT GT GT GT GT GT GT GT GC
77966 AT * 11 20/22 AT AC AT TT AT AT AT AT AT AT AT
140639 CT * 10 18/20 CT CT TT CT CC CT CT CT CT CT
152146 TG * 18 33/36 TG TG TG TG TG TG TG TG TG TG TG TG TC TG TG TC CG TG
160167 AC * 11 20/22 AC AC GC AC AC AC AC AA AC AC AC
163110 TG * 10 18/20 TG TG TG AG TG TG TG TG TC TG
185164 AT * 38 69/76 AT TC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT AT AT AT AT AT AT AA TT AT CA
189162 CA * 10 18/20 CA AA CA CA GA CA CA CA CA CA
196127 GT * 11 20/22 GT GT GT GT GT GT GT GT GT GC GG
196169 GT * 11 20/22 GT GC GT GT GT GT GT GT GT GT TT
201245 CA * 10 19/20 CA CA CA CA CA CA CA CA CA CT
217685 CA * 10 18/20 CA CA CA CA CA CA TA TA CA CA
229518 TA * 10 18/20 TA TA TC TA TA TA TA TA TA TC
231591 TG * 12 22/24 TG TG TG TA TG TT TG TG TG TG TG TG
233032 TG * 11 21/22 TG TG TG TG TG TG TG TG TG TG TA
235965 TG * 17 32/34 TG TG TG TG TG TG TG TG TG TG TG TG TA TG GG TG TG
242941 AT * 11 20/22 AT AT AT AA AT AT AT AT AA AT AT
243589 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG AG GG
245454 TG * 11 20/22 TG TG AG TG TG TG TG TG TG TG TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 254987
Total number of repeats detected.............. 27
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 2 0 0 2 3 5 3 0 1 0 0
15 to 19 0 0 0 0 0 1 2 0 0 0 0 0
20 to 24 0 1 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 1 0 0 0 0 0 0 0 0 0 0 0
35 to 39 1 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 7 3 0 0 2 4 7 3 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
7 AT + 3 TA = 10
0 AG + 0 GA + 1 CT + 0 TC = 1
3 GT + 7 TG + 4 CA + 2 AC = 16
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7299886|gb|AE003705.1|AE003705 Drosophila melanogaster genomic scaffold 142000013386035 section 30 of 105, complete sequence
Position Repeat Coverage Repeat
46721 CA * 18 33/36 CA CC CA CA CA CA CA CA CA CA CA CA CA CA CA CA CG TA
53566 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA GA CA CC
57375 TG * 14 26/28 TG TA TA TG TG TG TG TG TG TG TG TG TG TG
73117 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AA CC
97579 CA * 15 27/30 CA CA CA CG CA CA CA CA CT CA CA CA CA CA CT
117666 TC * 17 31/34 TC CC TC TC TC TC TC TC TC TC TC TC TC TT TC GC TC
123534 TA * 11 20/22 TA TA TA AA TA TA TA TA TA TG TA
128310 CA * 10 18/20 CA CA AA AA CA CA CA CA CA CA
128455 AG * 11 20/22 AG AG AG AG CG AG AG AG AA AG AG
163320 TA * 10 18/20 TA TA TA TA TA AG TA TA TA TA
164155 TC * 10 18/20 TC TC TC TC TC TG TC TC TC TA
168819 CA * 10 18/20 CA CA CG CA CA CA CA CA CG CA
172527 AG * 10 18/20 AG AG GG AG AG AG AG AG GG AG
210136 AT * 17 32/34 AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA
224485 AT * 13 24/26 AT AT TT AT AT AT AT AT AC AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 232744
Total number of repeats detected.............. 15
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 2 2 0 1 3 1 0 1 0 0 0
15 to 19 1 0 0 0 0 2 0 0 1 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 2 2 0 1 5 1 0 2 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 2 TA = 4
2 AG + 0 GA + 0 CT + 2 TC = 4
0 GT + 1 TG + 5 CA + 1 AC = 7
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7299861|gb|AE003704.1|AE003704 Drosophila melanogaster genomic scaffold 142000013386035 section 29 of 105, complete sequence
Position Repeat Coverage Repeat
3440 TG * 10 19/20 TG TG TG TG TG TG TG TG TG TA
3751 TA * 14 26/28 TA AA TA TA TA TA TA TA TG TA TA TA TA TA
18709 CT * 10 18/20 CT CT CT CT GT CT CT CT TT CT
18771 CT * 13 24/26 CT CC CG CT CT CT CT CT CT CT CT CT CT
22794 GA * 13 24/26 GA GA GA GA GA GA GA GA GA GA GA GC AA
25216 AG * 15 27/30 AG AG AG AG AG AG AG AG AG AG AA AG AG AC GG
26523 GT * 10 18/20 GT GT GT GT GT GT GC GG GT GT
54104 TA * 10 18/20 TA TA TA TA TA TT TT TA TA TA
60372 CA * 12 22/24 CA GA CA CA CA CA CA CA CA GA CA CA
77866 GT * 12 23/24 GT GT GG GT GT GT GT GT GT GT GT GT
78713 CA * 12 23/24 CA CA CA CA CA CA CA CA CA CA CA GA
78895 CA * 13 24/26 CA CG CA CA CA CT CA CA CA CA CA CA CA
80022 GT * 13 24/26 GT GT CT GT GT GT GT GT GT GT GT GT GG
87140 AG * 10 18/20 AG AG AT TG AG AG AG AG AG AG
89013 TG * 11 20/22 TG CG CG TG TG TG TG TG TG TG TG
97210 CA * 10 18/20 CA AG CA CA CA CA CA CA CA CA
102528 TA * 10 18/20 TA TA AA TA TA TA TA TA TA AA
103340 TG * 22 40/44 TG TA TC TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG AA
119550 AT * 10 18/20 AT AT AT AT AT TT AT TT AT AT
122441 CT * 20 36/40 CT CT CT CT CT CT CT CA CT TT CT CT CT CT CT CT CT CT CT TG
130155 AC * 10 18/20 AC AC AC AC AC AC GC AC GC AC
139569 AG * 15 27/30 AG AG AG AA AA AG AG AG AG AG AG AG AG AG AA
141187 GT * 10 19/20 GT GT GT GT GT GT GT GT AT GT
142249 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GT GA GT GC
152685 AT * 11 20/22 AT AT AT AT AT AT GT AT AT AT AG
187192 TC * 13 24/26 TC TC TC TC TC TC TC TC TC TA TC GC TC
208208 AG * 16 30/32 AG AG AG AG AG AG AG AG AG AT AG AG AG AG AG AA
212985 AG * 17 32/34 AG AG AG AC AA AG AG AG AG AG AG AG AG AG AG AG AG
-----------------------------------------------------------------------------------------
Total sequence length......................... 220572
Total number of repeats detected.............. 28
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 3 1 1 1 4 2 5 1 2 0 0
15 to 19 0 0 4 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 1 0 0 1 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 3 5 1 1 4 3 5 1 3 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 3 TA = 5
5 AG + 1 GA + 3 CT + 1 TC = 10
5 GT + 3 TG + 4 CA + 1 AC = 13
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7299833|gb|AE003703.1|AE003703 Drosophila melanogaster genomic scaffold 142000013386035 section 28 of 105, complete sequence
Position Repeat Coverage Repeat
2804 TG * 19 35/38 TG TG TG TT AG TG TG TG TG TG TG TG TG TG TG TG TG AG TG
5606 TA * 10 18/20 TA TA TC TA TA TC TA TA TA TA
8224 GT * 13 24/26 GT TT GT GT GT GT GC GT GT GT GT GT GT
11923 CA * 17 31/34 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CT TT
13505 AT * 13 24/26 AT AT AT AC AT AT AT AT AT AT AT AT AG
14370 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG TG GC
16886 TG * 10 19/20 TG TG TG TG TT TG TG TG TG TG
21309 AG * 10 18/20 AG AG GG AG GG AG AG AG AG AG
22812 CA * 10 18/20 CA CA CA CA CA TA CA CA CA CT
22978 TG * 10 18/20 TG AG TG TG TG TG TG TG TG AG
25150 AT * 10 18/20 AT AT AT AT GT AT AT GT AT AT
32082 TA * 10 18/20 TA TA TA TA TA TA TA TT AA TA
41144 TG * 12 23/24 TG TG TG TG TG TG TG TG TG TG TG TT
47158 TG * 10 18/20 TG TG TG TG TG CG TG TG TG TT
50704 CA * 10 18/20 CA CA CA CA CA CA CA CA CG TA
59511 AT * 11 20/22 AT AT AT GT AT AT AC AT AT AT AT
65921 AG * 15 28/30 AG AG AG AG AG AG AG AG AG AG AG AG AG CC AG
97115 AT * 10 18/20 AT AT AT AG CT AT AT AT AT AT
105654 AT * 10 19/20 AT CT AT AT AT AT AT AT AT AT
107941 TG * 11 20/22 TG TA TG TG TA TG TG TG TG TG TG
129351 AT * 22 40/44 AT TC AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT GT AT AT
142546 TG * 10 18/20 TG TG TG CG TG TG TG TG TT TG
151617 CA * 16 29/32 CA CT TA CA CA CA CA CA CA CA CA CA CA CA CT CA
158598 TG * 10 18/20 TG TG TG TG TG TG TG AG GG TG
161023 AT * 10 18/20 AT AT AT AT AT AA AT AC AT AT
172750 AC * 10 18/20 AC AC AG AC CC AC AC AC AC AC
175376 CA * 10 18/20 CA GA CA CA CA TA CA CA CA CA
176109 AC * 11 20/22 AC CC AA AC AC AC AC AC AC AC AC
180027 CA * 10 18/20 CA CA CA CA CA CA CA CA CG TA
198620 TC * 11 20/22 TC CC TC TC TC TC TC TC TC TT TC
-----------------------------------------------------------------------------------------
Total sequence length......................... 225419
Total number of repeats detected.............. 30
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 6 2 1 0 2 4 8 1 1 0 0 0
15 to 19 0 0 1 0 0 2 1 0 0 0 0 0
20 to 24 1 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 7 2 2 0 2 6 9 1 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
7 AT + 2 TA = 9
2 AG + 0 GA + 0 CT + 1 TC = 3
1 GT + 9 TG + 6 CA + 2 AC = 18
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7299815|gb|AE003702.1|AE003702 Drosophila melanogaster genomic scaffold 142000013386035 section 27 of 105, complete sequence
Position Repeat Coverage Repeat
5918 CA * 15 27/30 CA CA CA CA TA CA CA CA CA CA CA CA CA CT GA
7475 CA * 10 18/20 CA CT CA CA CA CA CA CA CT CA
11166 CA * 10 18/20 CA CA CA CA CG CA CA CA CA CT
11898 TG * 11 20/22 TG AG TG TG TG TG TG TA TG TG TG
29518 TA * 10 18/20 TA TG TA TA TA TA TA TA TA TT
58695 CT * 10 18/20 CT CT CC CT CT CC CT CT CT CT
66123 TC * 10 18/20 TC TC TC TC TC GC TT TC TC TC
66476 TC * 12 22/24 TC TC TC TC TT TT TC TC TC TC TC TC
114647 CA * 11 21/22 CA CA CA CA CA CA CA CA CA CA CT
124412 TA * 10 18/20 TA TA TA TA TA CA TA TA TA TT
129726 CA * 13 24/26 CA CA CA CG CA CA CA CA CA CA CA CA CG
155918 TA * 10 18/20 TA TA TA AA TA TA TA TT TA TA
161807 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AA TT
163256 TG * 11 21/22 TG TG TG TG TG TG TG TG TG TG CG
163940 CT * 10 18/20 CT CC CT CT CT CT CT CC CT CT
167422 TC * 11 21/22 TC TC TC TC TC TC TC TC TC TC TT
167515 CA * 10 18/20 CA CA CA TA CA CA CA CA TA CA
172676 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AC AG AA
174933 AG * 15 28/30 AG TG AG AA AG AG AG AG AG AG AG AG AG AG AG
176539 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TG TG TG TG CG GC
191962 TG * 12 22/24 TG TG TG AG TG TG TG TG TG TG TC TG
193739 GT * 17 32/34 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GC GC
195101 TA * 10 19/20 TA CA TA TA TA TA TA TA TA TA
195383 AT * 12 22/24 AT AC AT AT GT AT AT AT AT AT AT AT
201395 AT * 10 18/20 AT AT AC AT AT AA AT AT AT AT
208904 AG * 28 52/56 AG AG CG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG GG CG AG AG AG AA
210722 AC * 12 22/24 AC AC GC AC AC AC GC AC AC AC AC AC
212222 CT * 10 18/20 CT CT TT CT CT CT CT GT CT CT
217825 AG * 18 33/36 AG AT AG AG AG AG AG AG AG AG AG AG AG AG AG GG AA AG
222640 AC * 10 18/20 AC AC GC AC AC AC AC AA AC AC
222902 CA * 13 24/26 CA CA CA CA CG CA CA TA CA CA CA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 225974
Total number of repeats detected.............. 31
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 4 0 0 3 6 3 0 3 3 0 0
15 to 19 0 0 2 0 0 1 1 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 1 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 4 3 0 3 7 4 1 3 3 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 4 TA = 7
3 AG + 0 GA + 3 CT + 3 TC = 9
1 GT + 4 TG + 7 CA + 3 AC = 15
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7299778|gb|AE003701.1|AE003701 Drosophila melanogaster genomic scaffold 142000013386035 section 26 of 105, complete sequence
Position Repeat Coverage Repeat
53 CA * 10 18/20 CA CA CA CA CA TA CA CG CA CA
4684 GT * 15 28/30 GT GT GT GT GT GT GT GT GT GT GA GT GT GT TT
16761 AC * 12 23/24 AC AA AC AC AC AC AC AC AC AC AC AC
18227 TA * 17 31/34 TA TA TA AA TT TA TA TA TA TA TA TA TA TA TA TA AA
24243 CA * 15 27/30 CA CA CA CA CA CA CA CA TG CA CA CA CA CA CG
26632 CA * 13 24/26 CA CA CA CA CA CA CA AA CA CA AA CA CA
28096 GT * 15 28/30 GT GT GT GT GT GT GT GT GT GT GT GT GA GG GT
28912 GT * 13 24/26 GT TT AT GT GT GT GT GT GT GT GT GT GT
29074 GT * 12 23/24 GT GT GT GA GT GT GT GT GT GT GT GT
31401 AC * 12 22/24 AC AC AC AC AC AC AC AA AC AG AC AC
41396 AT * 16 29/32 AT AT AT AA AT AT AT AT AT AT AT AT AT AT AT GG
52794 AT * 17 31/34 AT AT AC AT AA AT AT AT AT AT AT AT AT AT TT AT AT
64453 AT * 12 22/24 AT CT AT AT AT AT AT AT AT AT AT CT
64693 GA * 10 18/20 GA GT GA GA GA GA GA GA GG GA
72787 AC * 16 30/32 AC AC AC AC AC AT AC GC AC AC AC AC AC AC AC AC
73116 GT * 11 20/22 GT GT GT GT GT GT GT GA AT GT GT
73141 TG * 17 32/34 TG TG TT TG TG TG TG TG TG TG TG TG TG TG TG TG GG
73333 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CA GG
83661 CT * 10 18/20 CT CT CT CT CT CC CG CT CT CT
86506 AC * 10 18/20 AC AC TC AC AC AC AC GC AC AC
91498 TA * 12 22/24 TA CA TA TA GA TA TA TA TA TA TA TA
111877 TA * 13 24/26 TA TA TA TA TA TG TA TA TA TA TA GA TA
124569 TA * 10 18/20 TA TA TA TA TA TA TA CA TA TG
136035 AC * 11 21/22 AC AC AC AC AC AC AC AC AC AC CC
139006 AG * 15 28/30 AG AG AG AG AG GG AG AG AG AG AG AG AG AG TG
141894 GT * 13 24/26 GT GC GT GG GT GT GT GT GT GT GT GT GT
151272 AT * 10 18/20 AT AT AT AC AT AT AC AT AT AT
163837 TA * 16 29/32 TA TA TA TA TA TA TA TA CA TA TA CA TA TA GA TA
163986 AT * 13 24/26 AT AT AT AT AT AT AT AT AT AG AG AT AT
168208 AT * 10 18/20 AT AT AT AT AA AT AT AT TT AT
194269 AG * 18 33/36 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG GA TG
194455 TC * 13 24/26 TC CC TC TT TC TC TC TC TC TC TC TC TC
196294 CA * 11 21/22 CA CA CA CA TA CA CA CA CA CA CA
196659 TG * 13 24/26 TG TG TG AG TG TG TG TG TG TG TG TG CG
-----------------------------------------------------------------------------------------
Total sequence length......................... 208418
Total number of repeats detected.............. 34
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 3 0 1 4 4 1 4 1 1 0 0
15 to 19 2 2 2 0 1 1 1 2 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 6 5 2 1 5 5 2 6 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
6 AT + 5 TA = 11
2 AG + 1 GA + 1 CT + 1 TC = 5
6 GT + 2 TG + 5 CA + 5 AC = 18
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7299755|gb|AE003700.1|AE003700 Drosophila melanogaster genomic scaffold 142000013386035 section 25 of 105, complete sequence
Position Repeat Coverage Repeat
823 TA * 11 20/22 TA TA TA TA TA TA CA TA TA TT TA
7287 CA * 10 18/20 CA CA CA CC TA CA CA CA CA CA
22971 GT * 18 33/36 GT GT GT TG GT GT GT GT GT GT GT GT GT GT CT GT GT GT
63606 TG * 16 29/32 TG TG TG TG TG TG TG TG CG AG TG TG TG TG TG TA
78309 CA * 10 18/20 CA CA AA TA CA CA CA CA CA CA
79743 AT * 11 20/22 AT AC AT AT AT AT GT AT AT AT AT
90766 GA * 10 19/20 GA GA GA GA GA GA GA GA GA GC
93928 TG * 10 18/20 TG CG AG TG TG TG TG TG TG TG
125524 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CG CA CG CA
125854 AC * 10 18/20 AC AC AT AC AC AC AC AC AC AA
126657 AC * 16 29/32 AC AC CC AC CC AC AC AC AC AC AC AC AC AC AC CC
128093 AC * 11 20/22 AC CA AC AC AC AC AC AC AC AC AC
134164 AC * 18 33/36 AC AC AC AC AC AC AC AC AC TC AC AC TC AC AC TC AC AC
139488 CA * 10 18/20 CA CA CC CA CA CC CA CA CA CA
144125 CA * 20 37/40 CA CA TC CA CA CA CA CA CA CA CA CA CA CA CA CA CA CT CA CA
144715 CA * 18 33/36 CA CT TA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CT
153889 CA * 15 28/30 CA CA CT CA CA CA CA CA CA CA CA CA CA CA CG
156181 AC * 17 31/34 AC AC AT GC AC AC AC AC AC AC AC AC AC AC AC AC AT
159087 AC * 13 24/26 AC TC GC AC AC AC AC AC AC AC AC AC AC
163235 AC * 11 21/22 AC AC GC AC AC AC AC AC AC AC AC
163286 TG * 12 22/24 TG TT TG TT TG TG TG TG TG TG TG TG
165278 GT * 15 27/30 GT GT TT GT GT GT GT GT GT GT GT GT GT GT CC
168126 TA * 16 29/32 TA TG TA TA TA TA TA GA TA TA TA TA TA TA TA TG
175074 CA * 12 22/24 CA TA CA CA CT CA CA CA CA CA CA CA
178753 AC * 17 31/34 AC AC AC AC GC AC AC AC AC AC AC AC AC AC AT AC AG
182313 TG * 12 22/24 TG TG TG TG TG TG TG TG TG GC TG TG
183237 TA * 15 27/30 TA AA TA TA TA TA TA TT TA TA TA TA TA TA TC
183700 AC * 17 31/34 AC AA AC AC AC AC AC AC AC AC AC AC AA AC AC TC AC
185230 GT * 17 31/34 GT GT TT GT GT GT GT GT GT GT GT GC GT GT GT AT GT
199336 CA * 11 21/22 CA CA CA CA CA CA CA CG CA CA CA
205397 TG * 13 24/26 TG AG TT TG TG TG TG TG TG TG TG TG TG
207919 CA * 12 22/24 CA CA CG CA CT CA CA CA CA CA CA CA
209500 AC * 10 19/20 AC AT AC AC AC AC AC AC AC AC
209530 CA * 10 18/20 CA CA CA CA CA TA CA CA GA CA
209735 CA * 12 22/24 CA TA CA CA CA CA CA CA AA CA CA CA
209976 AT * 10 18/20 AT AT AT AT GT AT GT AT AT AT
211469 GT * 13 24/26 GT GA GT GT GT AT GT GT GT GT GT GT GT
218823 TA * 15 27/30 TA TA TA TA TA TA TA TT TA TG TA TA TA TA AA
223331 CT * 18 33/36 CT CT CT CT CT CT CT CT CT CT CT CT TT CT GT CT CT CC
-----------------------------------------------------------------------------------------
Total sequence length......................... 229065
Total number of repeats detected.............. 39
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 1 0 1 5 9 4 1 0 0 0 0
15 to 19 0 3 0 0 5 2 1 3 0 1 0 0
20 to 24 0 0 0 0 0 1 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 4 0 1 10 12 5 4 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 4 TA = 6
0 AG + 1 GA + 1 CT + 0 TC = 2
4 GT + 5 TG + 12 CA + 10 AC = 31
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7299726|gb|AE003699.1|AE003699 Drosophila melanogaster genomic scaffold 142000013386035 section 24 of 105, complete sequence
Position Repeat Coverage Repeat
8055 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC AC GC AT
9090 TG * 11 20/22 TG TG TG TG TG TG TG TG TT TG TC
15205 AG * 11 20/22 AG AG AG AG AG AG AG GG AG AG TG
25034 AT * 11 20/22 AT AT AT AT CC AT AT AT AT AT AT
26563 TG * 22 40/44 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG CG TA GG AG
38443 AT * 11 20/22 AT AT GT AT AT AT AT AT AT AT AA
46480 TG * 11 20/22 TG TT TG CG TG TG TG TG TG TG TG
78152 TA * 12 22/24 TA TA TA TA TA TT TA TT TA TA TA TA
78722 GT * 10 18/20 GT GT GG GT GT GT GA GT GT GT
93486 AT * 10 18/20 AT AT AA AT AT AT AT TT AT AT
95239 GT * 13 24/26 GT GC GT GT GT GT GT GT GT GT GT GT AT
96082 AT * 11 20/22 AT AT AT AA CT AT AT AT AT AT AT
100221 TG * 16 29/32 TG TG TC TG TA TG TG TG TG TG TG TG TG TG TG TC
105059 TG * 10 18/20 TG TG TG TG TG TG TG TT TG GG
107171 GT * 12 22/24 GT GT GT GT GT GT GT GT CT GC GT GT
107196 TG * 10 18/20 TG TG GG TG TC TG TG TG TG TG
185570 GT * 11 20/22 GT GT GT GT CT TT GT GT GT GT GT
210475 GT * 16 29/32 GT AT GT GT GT GT GT GT GT GT GT GT GT GT GT AG
-----------------------------------------------------------------------------------------
Total sequence length......................... 225691
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 1 1 0 1 0 4 4 0 0 0 0
15 to 19 0 0 0 0 0 0 1 1 0 0 0 0
20 to 24 0 0 0 0 0 0 1 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 1 1 0 1 0 6 5 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 1 TA = 5
1 AG + 0 GA + 0 CT + 0 TC = 1
5 GT + 6 TG + 0 CA + 1 AC = 12
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7299688|gb|AE003698.1|AE003698 Drosophila melanogaster genomic scaffold 142000013386035 section 23 of 105, complete sequence
Position Repeat Coverage Repeat
9489 GT * 13 24/26 GT GT GC GT GT GT GT GT GT GT GT GT GC
11313 TG * 11 20/22 TG TG TG TG TG TG TG TT TT TG TG
15416 GA * 10 18/20 GA GC GA GA GA GA GG GA GA GA
15524 AC * 11 20/22 AC AA AC AC AC AC AC AC AC AT AC
16269 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CT CA CG CA
29763 CA * 11 20/22 CA CA CA CA CT CA CA CA CA GA CA
30001 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA CA TT
31609 TA * 10 18/20 TA TA TT TA TA TA CA TA TA TA
34925 GT * 21 39/42 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT AC GG
69791 AT * 18 33/36 AT AG AT AT AT AT AT AT AT AT AT AT AT AG AT CT AT AT
88807 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AA AA
90858 TG * 10 18/20 TG TG TG CG TG CG TG TG TG TG
91050 GA * 13 24/26 GA GT GA GT GA GA GA GA GA GA GA GA GA
91841 CA * 12 22/24 CA TA CA CA CA CA CA CA CG CA CA CA
93311 AT * 14 26/28 AT AT AT AC AT AT AT AT AT AT AT AT AA AT
94624 AC * 10 19/20 AC AC AC AC AC AC AC AC AC AA
96301 AT * 10 18/20 AT AT AT AA AT AT GT AT AT AT
100547 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AC CA
100783 AT * 10 18/20 AT AT AT AG AT CT AT AT AT AT
100805 AT * 17 31/34 AT AT AT AT AT TT AT AT AT GT AT AT AT AT AA AT AT
101781 AT * 14 26/28 AT AT AC AT AT AT AT AT AA AT AT AT AT AT
102530 AC * 11 20/22 AC AC AC AC CC AC GC AC AC AC AC
142751 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA CT CT
143164 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TT TG TG TA
144148 GT * 10 18/20 GT GT AT GT GT GT GT GT GT CT
146748 TA * 11 20/22 TA TA CA TA TA TA TA TA TA TG TA
152053 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA CA TT
153443 TC * 15 27/30 TC TC TC TC CA TC TC TC TC TC TC TC TC TC AC
154482 TG * 11 20/22 TG TG CG TG TG TG TG AG TG TG TG
194643 TG * 11 20/22 TG TG GC TG TG TG TG TG TG TG TG
200062 AC * 11 20/22 AC AC AC AC AC AT AT AC AC AC AC
212145 TG * 10 18/20 TG CG TG TG TG TG TG TG TG GG
218432 AC * 11 20/22 AC GC AC AC AC AC AT AC AC AC AC
-----------------------------------------------------------------------------------------
Total sequence length......................... 225299
Total number of repeats detected.............. 33
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 2 0 2 6 6 6 2 0 0 0 0
15 to 19 2 0 0 0 0 0 0 0 1 0 0 0
20 to 24 0 0 0 0 0 0 0 1 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 7 2 0 2 6 6 6 3 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
7 AT + 2 TA = 9
0 AG + 2 GA + 0 CT + 1 TC = 3
3 GT + 6 TG + 6 CA + 6 AC = 21
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7299670|gb|AE003697.1|AE003697 Drosophila melanogaster genomic scaffold 142000013386035 section 22 of 105, complete sequence
Position Repeat Coverage Repeat
33540 TG * 11 20/22 TG AT TG TG TG TG TG TG TG TG TG
36553 GT * 16 30/32 GT GT GT GT GT GT GT GC GT GT GT GT GT GT GA GT
73384 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TG TG TG TG CT TA
86493 CA * 10 18/20 CA CA CT CG CA CA CA CA CA CA
94077 TG * 12 22/24 TG TA TA TG TG TG TG TG TG TG TG TG
106964 CA * 10 18/20 CA TA CA AA CA CA CA CA CA CA
108347 TA * 10 18/20 TA TA TA TA TA TA TA TT AA TA
138304 CA * 11 20/22 CA GA CA CA CA CA CA CG CA CA CA
145746 TG * 11 20/22 TG TG TG TG GG TG TG TA TG TG TG
151246 AT * 11 20/22 AT AT AT AG AT AT AT AA AT AT AT
156888 AT * 10 18/20 AT AT AT AT GT AT AT AT GT AT
189222 TA * 13 24/26 TA TA GA TA CA TA TA TA TA TA TA TA TA
210393 TG * 11 20/22 TG TG CT TG TG TG TG TG TG TG TG
212593 GT * 10 18/20 GT GT GT GT GT GT GT GT GA TT
214963 AT * 13 24/26 AT AT AT AT AT AC AC AT AT AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 226860
Total number of repeats detected.............. 15
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 2 0 0 0 3 4 1 0 0 0 0
15 to 19 0 0 0 0 0 0 1 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 2 0 0 0 3 5 2 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 2 TA = 5
0 AG + 0 GA + 0 CT + 0 TC = 0
2 GT + 5 TG + 3 CA + 0 AC = 10
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7299628|gb|AE003696.1|AE003696 Drosophila melanogaster genomic scaffold 142000013386035 section 21 of 105, complete sequence
Position Repeat Coverage Repeat
14807 GT * 11 20/22 GT GG GA GT GT GT GT GT GT GT GT
20322 TC * 10 18/20 TC CG TC TC TC TC TC TC TC TC
72526 AC * 12 22/24 AC AC GC AC GC AC AC AC AC AC AC AC
90813 TG * 12 22/24 TG TG TG TG TG TG TG TG TG GG AG TG
99651 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA CA GT
104832 AC * 10 18/20 AC AA AC AC AC AC AC AC AT AC
111719 TG * 10 18/20 TG TG TA TG TG TG TG GG TG TG
116537 AC * 12 22/24 AC AC AC AC AA AC AC TC AC AC AC AC
116563 AC * 10 18/20 AC AC AC AT AC AC AC AC TC AC
125923 GT * 10 18/20 GT AT GT GT GT GT GT GT GT GA
128592 TG * 10 18/20 TG AG TG TG TG TG TG AG TG TG
143141 AT * 10 18/20 AT AT GT AT AT AT AT AT GT AT
144400 TG * 12 22/24 TG CG AG TG TG TG TG TG TG TG TG TG
146627 GT * 11 20/22 GT GT GT GA GT GT GT GT GC GT GT
156174 AT * 11 20/22 AT AT AT AC AT AT AT GT AT AT AT
162569 TG * 23 42/46 TG TG TG TG TG CG TG CG TG TG TG TG TG TG TG TG TG TG TG TG AG TG CG
181669 TG * 11 20/22 TG TG TG TG TG TG TG TG TT TG GG
188579 GT * 10 18/20 GT GT GT GT GT GT GT GT GC GC
201570 CT * 10 18/20 CT CT CT CT CT CT CT CT GT CG
202003 GT * 16 29/32 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 228143
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 0 0 0 4 1 5 4 1 1 0 0
15 to 19 0 0 0 0 0 0 0 1 0 0 0 0
20 to 24 0 0 0 0 0 0 1 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 0 0 0 4 1 6 5 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 0 TA = 2
0 AG + 0 GA + 1 CT + 1 TC = 2
5 GT + 6 TG + 1 CA + 4 AC = 16
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7299572|gb|AE003695.1|AE003695 Drosophila melanogaster genomic scaffold 142000013386035 section 20 of 105, complete sequence
Position Repeat Coverage Repeat
1422 TA * 21 38/42 TA TA TA TA TA TA TA TA TA AA TA TA TA TA TG TA TA TA TG GA TA
68739 TG * 10 18/20 TG TG TG TG TG TG TG TG GG GG
79219 AT * 12 23/24 AT AT AT AT AT AT AT AT AC AT AT AT
80226 GT * 11 20/22 GT GT GT GT CC GT GT GT GT GT GT
84540 AG * 17 31/34 AG AG AG AG AG AG AG AG AG AG AG AG GG AA AG AG AA
89563 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AG AG AC
131119 AC * 17 32/34 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC TT
220438 TA * 13 24/26 TA GA TA TA CA TA TA TA TA TA TA TA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 225655
Total number of repeats detected.............. 8
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 1 0 0 1 0 1 1 0 0 0 0
15 to 19 0 0 1 0 1 0 0 0 0 0 0 0
20 to 24 0 1 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 2 1 0 2 0 1 1 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 2 TA = 3
1 AG + 0 GA + 0 CT + 0 TC = 1
1 GT + 1 TG + 0 CA + 2 AC = 4
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7299542|gb|AE003694.1|AE003694 Drosophila melanogaster genomic scaffold 142000013386035 section 19 of 105, complete sequence
Position Repeat Coverage Repeat
1167 CA * 12 22/24 CA TA CA CA CA CA CA CA CA CA CA CT
11798 TG * 16 30/32 TG TG TG TG TG TG TG TG TG TG TC TG TG TG TG TT
20452 GT * 11 20/22 GT GC GT GT GT GT GT GT GT GT GC
20600 GT * 10 18/20 GT TT GC GT GT GT GT GT GT GT
27763 TG * 13 24/26 TG TG TG TG TA TG TG TG TG TT TG TG TG
27790 GT * 10 18/20 GT GT GA GG GT GT GT GT GT GT
48602 TG * 12 23/24 TG TG TG TT TG TG TG TG TG TG TG TG
48966 CA * 11 20/22 CA CA CA CA CG CA CA CA CC CA CA
66181 TG * 11 21/22 TG CG TG TG TG TG TG TG TG TG TG
80791 TC * 10 18/20 TC TA TC TC TC TT TC TC TC TC
81728 GT * 10 18/20 GT GT AT GT GT GT GT GA GT GT
100868 GT * 11 20/22 GT GA GT GT GT GT GC GT GT GT GT
121901 AC * 10 19/20 AC AC AC AC AC AC AC AC AC AT
131300 TA * 15 27/30 TA TA TA TA TA TA AA TA TA TA CA TA TA TA CA
139013 CA * 16 29/32 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CC AC
139149 TA * 11 20/22 TA TA TA TA TG TG TA TA TA TA TA
141089 TA * 11 20/22 TA TA TA TA TA TA TA TA TA TT TG
143005 TA * 11 20/22 TA TA TA TT TA TA TA TA TA TA TT
144672 GT * 11 21/22 GT GT GT GT GT GT GT GT GT GT GC
157286 TG * 10 19/20 TG TG TG TG TG TG TG TG TG TA
174568 TG * 12 22/24 TG TC TG TG TG TG TG TG TG TG TG AG
203638 AC * 13 24/26 AC AC AC TC AC AC AC AC AC AC AC AC AG
-----------------------------------------------------------------------------------------
Total sequence length......................... 226108
Total number of repeats detected.............. 22
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 3 0 0 2 2 5 6 1 0 0 0
15 to 19 0 1 0 0 0 1 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 4 0 0 2 3 6 6 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 4 TA = 4
0 AG + 0 GA + 0 CT + 1 TC = 1
6 GT + 6 TG + 3 CA + 2 AC = 17
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7299506|gb|AE003693.1|AE003693 Drosophila melanogaster genomic scaffold 142000013386035 section 18 of 105, complete sequence
Position Repeat Coverage Repeat
12817 CT * 12 22/24 CT CT CT CT CT CT CT CT CT AT CT AT
15499 AG * 13 24/26 AG AT AG AG AG AG AG AG AG AG AG TG AG
22905 GA * 12 22/24 GA GA GA GA GA GA GT GA GT GA GA GA
24969 CA * 10 18/20 CA CA CT CA AA CA CA CA CA CA
27045 AC * 11 20/22 AC AC GT AC AC AC AC AC AC AC AC
74447 GT * 10 18/20 GT GA GT GT GT GT GT GA GT GT
76654 TG * 12 22/24 TG TG TG TA AG TG TG TG TG TG TG TG
82527 GA * 11 20/22 GA GA GA AC GA GA GA GA GA GA GA
123141 CA * 11 21/22 CA CA CA CA CA CA CA CA CA CA CT
125672 TA * 15 27/30 TA TA TG TA CA TA TA TA TA TA TA TA TA TA TC
147012 TA * 12 22/24 TA AT TA TA TA TA TA TA TA TA TA TA
155163 AC * 23 42/46 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC TA AC AC AA AC AA AC AC
155861 CA * 11 20/22 CA AG CA CA CA CA CA CA CA CA CA
160628 AC * 12 22/24 AC AT AC AC AC AC AC AC AA AC AC AC
162610 TG * 12 22/24 TG CG TG TG TG TG TG TG TT TG TG TG
171203 AC * 13 24/26 AC AT AC GC AC AC AC AC AC AC AC AC AC
187924 TG * 10 18/20 TG TG AA TG TG TG TG TG TG TG
200797 AT * 12 22/24 AT AT AT AT AA TT AT AT AT AT AT AT
206294 AT * 10 18/20 AT AT AT GT AT AT GT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 226496
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 1 1 2 3 3 3 1 0 1 0 0
15 to 19 0 1 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 1 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 2 1 2 4 3 3 1 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 2 TA = 4
1 AG + 2 GA + 1 CT + 0 TC = 4
1 GT + 3 TG + 3 CA + 4 AC = 11
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7299460|gb|AE003692.1|AE003692 Drosophila melanogaster genomic scaffold 142000013386035 section 17 of 105, complete sequence
Position Repeat Coverage Repeat
1263 GT * 14 26/28 GT GT GT GT GT GT GT CT GT AT GT GT GT GT
1679 TG * 11 20/22 TG CT TG TG TG TG TG TG TG TG TG
2904 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA GA GA
5008 CA * 10 18/20 CA TA CA CA CA CA AA CA CA CA
7066 CA * 14 26/28 CA CA CA AA CA CA CA CA AA CA CA CA CA CA
8923 GT * 12 22/24 GT GT GT GT GT GT GT GA GT GT GG GT
9720 AC * 12 22/24 AC GC AC AC AC AC CC AC AC AC AC AC
10546 AT * 20 36/40 AT CT AT AT AT AT AT AT AT AT AT AT GT AT AT AT AA AT AT AG
17095 AT * 10 18/20 AT AT AT AT AT AT AT AC AT GT
20000 TC * 16 29/32 TC TC CC TC GC TC TC TC TC TC TC TC TC TC TC TT
21096 TG * 16 29/32 TG TG CG TG TG TG TG TG TG TG TG AG TG TG TG TT
24926 GT * 15 27/30 GT GT GA GA GT GT GT GT GT GT GT GT GT GT GG
27428 AC * 11 20/22 AC AC AC AC AC AC AC AA AC AC AA
28138 GT * 16 29/32 GT GC AT GT GT GT GT GT GT GT GT GT GT GT GT GC
31768 CA * 13 24/26 CA CG CA CA CG CA CA CA CA CA CA CA CA
32048 AC * 11 20/22 AC GC AC AC TC AC AC AC AC AC AC
46669 AT * 10 18/20 AT AT AT AT AT GT AT AT GT AT
46865 TG * 10 18/20 TG TG TG TG TG TG TG TG GG GG
68869 AT * 12 22/24 AT AT AT AT AT AT AT AG AT AT TT AT
78476 AC * 10 18/20 AC AC AC AC AC AC AC AC AC GG
81395 AT * 13 24/26 AT AT AT AT AT AT AT AT AT AT AT AT GC
81699 CT * 11 20/22 CT CT CT CC CT CT CT CT AT CT CT
88799 AT * 10 18/20 AT AT AT AT AT AT AT AT AG AG
125706 GA * 18 33/36 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GG GA GA AG
133110 TG * 10 18/20 TG TG TG GT TG TG TG TG TG TG
142963 AT * 10 18/20 AT AA AT AT AT AT AT AT AA AT
199618 AT * 16 29/32 AT AT AT AT AT AT AT AT AT AT GT AT GT AT GT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 227817
Total number of repeats detected.............. 27
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 6 0 0 0 4 4 3 2 0 1 0 0
15 to 19 1 0 0 1 0 0 1 2 1 0 0 0
20 to 24 1 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 8 0 0 1 4 4 4 4 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
8 AT + 0 TA = 8
0 AG + 1 GA + 1 CT + 1 TC = 3
4 GT + 4 TG + 4 CA + 4 AC = 16
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7299436|gb|AE003691.1|AE003691 Drosophila melanogaster genomic scaffold 142000013386035 section 16 of 105, complete sequence
Position Repeat Coverage Repeat
2173 TG * 20 36/40 TG TG TG CG TG TG TG TG TG TG TG TG TG TG TG CG TG TG TG GA
7269 TG * 12 22/24 TG TG TG TT CG TG TG TG TG TG TG TG
8477 AC * 11 20/22 AC AC AC AC GC AC AC AC TC AC AC
10251 TA * 10 19/20 TA TA TA TA TA TA TA TA TA TT
21701 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TG CC
30365 AT * 12 22/24 AT AT AT AT AT AC AT AT AT AT AT GT
31501 GT * 11 20/22 GT GG GT GT GT GT GT GT GT TT GT
36088 AT * 11 20/22 AT AT AG AT AT AT AT AT AT AA AT
36250 AT * 15 27/30 AT AT AT AT AA AT AT AT AT AT AT AT AT GT CT
36324 GT * 13 24/26 GT GT GT GT GC GT GT GT GT GT GT GC GT
38221 CA * 17 31/34 CA CA CC CA TA CA CA CA CA CA CA CA CA CA CA CA CT
39168 AG * 10 18/20 AG AA AG AG AG GG AG AG AG AG
43285 AC * 14 26/28 AC AC AC AC AC AC AC AC AC AC AC TC GC AC
43749 CT * 17 32/34 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CC CG
43797 TG * 10 18/20 TG TG TG CG TG TG TG TG TG TA
55229 AC * 12 22/24 AC AC TC AC AC AC GC AC AC AC AC AC
55444 TG * 15 27/30 TG TG TG CG TG TG TG TG TG TG TG TG TG TA AG
62291 GT * 18 33/36 GT GT GT GT GT GT GT GT GT GT GT TC GT GT GC GT GT GT
74244 CA * 12 23/24 CA CT CA CA CA CA CA CA CA CA CA CA
80572 GA * 15 27/30 GA GA CA GA GA GA GA GA GA GA GA GA GA GA CG
92204 TG * 11 20/22 TG TG TA TG TG TG TG TG TG TG TT
93316 CT * 12 23/24 CT CA CT CT CT CT CT CT CT CT CT CT
94689 GA * 12 22/24 GA AA GA GA GA GA GA GA GA AA GA GA
96286 CA * 11 20/22 CA CG CA CA CG CA CA CA CA CA CA
96340 GA * 13 25/26 GA GA GA GA GA GA GA GA GA GA GA GA AA
101449 AT * 10 18/20 AT AT AA AT AT AT AT AC AT AT
102296 TA * 12 22/24 TA TA TA TG CA TA TA TA TA TA TA TA
109201 CA * 11 20/22 CA CA CA CT CA CA CA CA CA CA GA
149212 GT * 10 18/20 GT GT GT GT CT GT GT GT GT GG
154376 AT * 13 24/26 AT AT AT AT TC AT AT AT AT AT AT AT AT
154473 CA * 12 22/24 CA CA CA CA CA CC CG CA CA CA CA CA
165241 AT * 10 18/20 AT AT AT AT AC AT AT GT AT AT
169622 AC * 10 19/20 AC AC AC AC AC AC AC AC AC AT
178747 GT * 10 18/20 GT CT GC GT GT GT GT GT GT GT
180451 TA * 10 18/20 TA TA TA TA TA TA TA TA TA AC
186558 GT * 12 22/24 GT AT GT GT GT GT GT GT GT GT GT GC
193233 CA * 13 24/26 CA TT CA CA CA CA CA CA CA CA CA CA CA
193266 AC * 13 24/26 AC CC AC AC AT AC AC AC AC AC AC AC AC
196604 AT * 13 24/26 AT AT AT AT AT AT AT AT AT AT AT AT NN
199665 CA * 11 20/22 CA CA CA CA CA CT CA CA CC CA CA
211450 GT * 17 31/34 GT GC GT GT GT GT GT GT GT GT GT GT TT GT GT GT GA
214741 TG * 14 26/28 TG TG TG TG TG TG TG TG TG TG TG TG TG CT
221452 GT * 11 20/22 GT GT GT TT GT TT GT GT GT GT GT
221717 AC * 11 20/22 AC GC CC AC AC AC AC AC AC AC AC
222612 GT * 12 22/24 GT GT GA GT GT GT AT GT GT GT GT GT
223379 TG * 11 20/22 TG TG GG TG TG GG TG TG TG TG TG
226320 TG * 11 20/22 TG TG TG CT TG TG TG TG TG TG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 226775
Total number of repeats detected.............. 47
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 6 3 1 2 6 6 7 7 0 1 0 0
15 to 19 1 0 0 1 0 1 1 2 0 1 0 0
20 to 24 0 0 0 0 0 0 1 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 7 3 1 3 6 7 9 9 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
7 AT + 3 TA = 10
1 AG + 3 GA + 2 CT + 0 TC = 6
9 GT + 9 TG + 7 CA + 6 AC = 31
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7299394|gb|AE003690.1|AE003690 Drosophila melanogaster genomic scaffold 142000013386035 section 15 of 105, complete sequence
Position Repeat Coverage Repeat
6513 CA * 10 18/20 CA CA CA CA CA CA CA AG CA CA
9325 TG * 12 22/24 TG GG TG TG TG TG TG TG TG TG CG TG
16198 CA * 10 18/20 CA CA CA CA CA CA CA AG CA CA
22603 CA * 11 20/22 CA CC CA CA CA CA CA CA CA CA GA
24057 AG * 10 18/20 AG AG AG AG AG AA AC AG AG AG
24206 AC * 10 18/20 AC GC AC AC AC AA AC AC AC AC
24610 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TA TG TG AG
29568 AT * 10 18/20 AT AT AT AT GT AT AT GT AT AT
32021 TG * 13 25/26 TG TT TG TG TG TG TG TG TG TG TG TG TG
32154 CA * 11 21/22 CA CA CA CA CA CA CA CA CA CA CC
35598 CA * 12 23/24 CA CA CA CA CA CA CA CA CA CA CG CA
43011 CA * 14 26/28 CA CA CC CA CA CA CA CA CA CA CA CA CA GA
53901 GT * 11 20/22 GT AA GT GT GT GT GT GT GT GT GT
62343 AT * 15 28/30 AT AT AT AT GT AT AT AT AT AT AT AT AT AT AA
86553 TA * 31 56/62 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TG CA TA TA TA TA CA TT TT
93062 AC * 18 33/36 AC AA AC AC AG AC AC AC AC AC AC AC AC AC AC AG AC AC
97403 AT * 11 21/22 AT AT AT AT AT AT AT AT GT AT AT
100079 TC * 13 24/26 TC TC TT TC TC TC GC TC TC TC TC TC TC
103059 TG * 10 18/20 TG CA TG TG TG TG TG TG TG TG
133916 AC * 12 22/24 AC CC AC AA AC AC AC AC AC AC AC AC
146162 TA * 11 20/22 TA TA TA TT TT TA TA TA TA TA TA
167701 GT * 20 36/40 GT GT GT GT GT GT GT GT GT GT GT GA GT GT GA GT GA GT GT GG
168335 CT * 15 27/30 CT CT CT CT CA CT CT CT CT CT CT CT GT CT GT
171393 AC * 16 29/32 AC TC AC AC AC AG AC AC AC AC AC AC AC AC AA AC
171743 AC * 15 27/30 AC AC AC AC AC AC AC AC AC AC AC GC AC AC TG
174807 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA TT CA
175221 TG * 11 20/22 TG GG TG TG TG TA TG TG TG TG TG
179344 TG * 10 18/20 TG TC TG TG TG TG TG TG TG TC
184445 CA * 15 27/30 CA CA CA CA CA CA CA CA CA CA CA CA TA GA AA
188102 CT * 10 18/20 CT TT CT CT CT CT CT CT CA CT
189625 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT GC TT
189666 GT * 10 18/20 GT GT GA GT GT GT AT GT GT GT
190344 GT * 10 18/20 GT AT GT GT AT GT GT GT GT GT
193245 CA * 11 20/22 CA CA CA CA CA CA TA CA CC CA CA
195974 CA * 12 22/24 CA AG CA CA CA CA CA CA CA CA CA CA
196126 CA * 10 18/20 CA CA CA AA AA CA CA CA CA CA
204696 TG * 10 18/20 TG TG TG TG CG TG TG TC TG TG
207288 AT * 11 20/22 AT AT AT AT AT AC AT AT AT AT GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 210299
Total number of repeats detected.............. 38
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 1 1 0 2 10 7 4 1 1 0 0
15 to 19 1 0 0 0 3 1 0 0 0 1 0 0
20 to 24 0 0 0 0 0 0 0 1 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 1 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 2 1 0 5 11 7 5 1 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 2 TA = 6
1 AG + 0 GA + 2 CT + 1 TC = 4
5 GT + 7 TG + 11 CA + 5 AC = 28
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7299379|gb|AE003689.1|AE003689 Drosophila melanogaster genomic scaffold 142000013386035 section 14 of 105, complete sequence
Position Repeat Coverage Repeat
13789 AT * 10 18/20 AT TT AT AT AT AT AT GT AT AT
16879 AT * 13 24/26 AT AT AT AT AT AT AT TT AT AT AT AT AA
33064 GT * 11 20/22 GT GT GT GT GT GT GC GT GT GT GA
34084 TG * 11 20/22 TG AG TG AG TG TG TG TG TG TG TG
34271 GT * 11 20/22 GT GC GT GT GT GT GT GT GT GT GC
34855 AC * 16 29/32 AC GC AC AC AC AC AC AC AC AC AC AC AA AC AC AG
35035 TG * 10 19/20 TG TG TG TG TG TG TG TG TG CG
39629 AT * 10 18/20 AT AT AC AT AT AA AT AT AT AT
42932 TA * 12 22/24 TA TA TA TA TA TG TA TA TA TA TA TT
44259 TG * 11 20/22 TG TG TA TG TG AG TG TG TG TG TG
48049 AC * 11 20/22 AC AC AC AC AT AG AC AC AC AC AC
49715 AC * 10 18/20 AC AC AC TC AC AC AC AC AC TC
50170 CA * 11 20/22 CA CA CA CA CA CA CA CG CA CT CA
52535 AG * 10 18/20 AG AG GA AG AG AG AG AG AG AG
53020 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA TA TA
53516 CA * 10 18/20 CA CA CA CA TA CA CA CA TA CA
54566 TG * 10 18/20 TG TG TG TG TG TT TG GG TG TG
55886 GT * 16 29/32 GT GT GT GT GT GT GT GT GT GT TT GT GT GA GC GT
74300 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG AA
76488 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG CG AG
87449 CA * 15 27/30 CA CA CA CA CA TA CA CA CA CA CA CA CA CA TG
98720 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA CG CC
99312 CA * 10 18/20 CA CC CA CC CA CA CA CA CA CA
100090 GT * 12 23/24 GT GT GT GT GT GT GT GT GT GT GT GC
101569 CA * 10 18/20 CA CA CA CA CA CA CA CA CA GG
104379 AT * 11 20/22 AT AA AT AT AT AT AT AT AT AC AT
110668 AG * 14 26/28 AG AG AG AG AG AG AG AG AG AG AG AG AG CA
114520 TG * 12 22/24 TG TC TG CG TG TG TG TG TG TG TG TG
115053 GA * 13 24/26 GA CA GA GA GA GA GA GA GA GA GG GA GA
116138 GT * 15 27/30 GT GT GT GT GT GT GT GT GT AT GG GT GT GT TT
116777 AC * 10 18/20 AC AC AA AC AC GC AC AC AC AC
118540 TA * 18 33/36 TA TA CA TA CA TA TA TA TA TA TA TA TA TA TA TA TA AA
122420 CA * 13 25/26 CA CA CA CA CA CA CA CA CA CA CA CA AA
124010 AT * 12 22/24 AT AT AT AT AT AT AG AT AT AT AT AA
134656 AC * 12 22/24 AC AC AC TC GC AC AC AC AC AC AC AC
142360 AC * 20 37/40 AC AC AC AC AC AC AC AC AC AC AC AT AC AC AT AT AC AC AC AC
143767 TG * 21 38/42 TG TG TG TG TG TG TC TG TG TG TG TG TG TG TG TG TA TT TG GG TG
147659 GT * 11 20/22 GT GT GC GT GT GT GT GT TT GT GT
153935 CA * 16 30/32 CA AA CC CA CA CA CA CA CA CA CA CA CA CA CA CA
158301 CA * 10 18/20 CA AA CA CA CA CA GA CA CA CA
158789 CA * 11 20/22 CA CA CT CA CA CA CA CA CG CA CA
166931 AC * 10 18/20 AC AC AC AC AC AT AT AC AC AC
167260 TG * 16 30/32 TG TG TA GG TG TG TG TG TG TG TG TG TG TG TG TG
178526 AC * 15 27/30 AC AC AA AC AA AC AC AC AC AC AC AC AC AC AA
200874 TA * 10 18/20 TA TA TA TA TA TC TA TA TA TG
201073 AC * 20 36/40 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AG GA AC AC AA
211243 AC * 10 19/20 AC AC AC AC AC AC AC AC AC AT
213704 AG * 10 18/20 AG AG AG AC AG AC AG AG AG AG
-----------------------------------------------------------------------------------------
Total sequence length......................... 215984
Total number of repeats detected.............. 48
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 2 3 1 6 9 7 4 0 0 0 0
15 to 19 0 1 0 0 2 2 1 2 0 0 0 0
20 to 24 0 0 0 0 2 0 1 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 3 3 1 10 11 9 6 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 3 TA = 8
3 AG + 1 GA + 0 CT + 0 TC = 4
6 GT + 9 TG + 11 CA + 10 AC = 36
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7299341|gb|AE003688.1|AE003688 Drosophila melanogaster genomic scaffold 142000013386035 section 13 of 105, complete sequence
Position Repeat Coverage Repeat
23544 GT * 12 22/24 GT GT GT GT GT GT GT GT GC CT GT GT
29624 CA * 17 31/34 CA CG CA CA CA CA CA CA CA CA CA CA CA CA CA CG CG
42138 TC * 11 20/22 TC TC TC TC TC TC TC TT TT TC TC
46088 CA * 10 18/20 CA CA AA CA CA CA CA CA CA TA
116813 TG * 10 18/20 TG CG AG TG TG TG TG TG TG TG
128607 TA * 12 22/24 TA TA CA AA TA TA TA TA TA TA TA TA
128672 AT * 12 22/24 AT GT AT AT AT TT AT AT AT AT AT AT
146830 TA * 10 18/20 TA TA TA TA TG TA TA TG TA TA
175915 TA * 16 29/32 TA TA TC CA TA TA TA TA TA TA TA TA TA TA TA TG
179240 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TG TG TG TG TA CT
181216 AG * 20 36/40 AG AG AT TG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AA AC
182936 TA * 10 18/20 TA TA TA TA TA TA TA CA GA TA
185146 AT * 10 18/20 AT AT AT AT GT AT GT AT AT AT
218438 AG * 12 22/24 AG AG AG AG AG AG AG AG AG AG CG AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 224795
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 3 1 0 0 1 1 1 1 0 0 0
15 to 19 0 1 0 0 0 1 1 0 0 0 0 0
20 to 24 0 0 1 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 4 2 0 0 2 2 1 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 4 TA = 6
2 AG + 0 GA + 0 CT + 1 TC = 3
1 GT + 2 TG + 2 CA + 0 AC = 5
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7299333|gb|AE003687.1|AE003687 Drosophila melanogaster genomic scaffold 142000013386035 section 12 of 105, complete sequence
Position Repeat Coverage Repeat
2052 GT * 10 18/20 GT GT GC GT GT GA GT GT GT GT
36177 GT * 12 22/24 GT GT CT GT GT GT GT GT GT GT GT GG
36412 TG * 12 22/24 TG TA TG TG TG TG TG TG TG CG TG TG
36592 GT * 11 20/22 GT TT GT GT GT AT GT GT GT GT GT
42146 GT * 22 40/44 GT GT GC GT GT GT GT GT TT GT GT GT GT GT GT GT GT GT CT GT GT GG
42309 GT * 11 20/22 GT GT GT GT GT GT GT GG GT AT GT
43316 GT * 10 19/20 GT GT GT GT GT GT GT GT GA GT
47277 CA * 10 18/20 CA CA GA CA CA CT CA CA CA CA
48812 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG GT
56457 CA * 10 18/20 CA CT CA CA CA CA CA CA CA CG
57715 TG * 10 19/20 TG TG TG TG AG TG TG TG TG TG
60741 TG * 15 27/30 TG TT TG CG TG TG TG TG TG TG TG TG TG TG TA
66664 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TG CC
98587 CA * 13 24/26 CA CA TT CA CA CA CA CA CA CA CA CA CA
100351 GT * 11 20/22 GT GT GT GT GT GT GC AT GT GT GT
106335 CA * 15 27/30 CA CA CA CA TA CA CA CA CA CA CA CA CA CT CG
110524 AG * 17 31/34 AG AG AG AG AG AG AG AG AG AG AG AG AG AG CG GG AA
114089 GT * 11 20/22 GT GT GT GT GC GT GT GT GT AT GT
122620 CA * 18 34/36 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CG AA CA CA
125946 GT * 11 20/22 GT GT GT CT GT GT GT GT GT GA GT
132478 AG * 13 24/26 AG AG AG AG GG AG AG AG AG AG AG AG AC
141294 AT * 10 18/20 AT AT AT AT AC TT AT AT AT AT
143979 AT * 18 33/36 AT AT GT AT AT AT AT AT AT AT AT AT AT AT AA AT GT AT
156435 AC * 10 18/20 AC GC AC AC AC AC AC AG AC AC
157193 TG * 10 18/20 TG TG TG TG TG TG TG AG TG TA
161276 AC * 15 28/30 AC TC AA AC AC AC AC AC AC AC AC AC AC AC AC
189544 TA * 11 20/22 TA TA TA TA TA TA TA TA TA TG TG
206066 AT * 10 19/20 AT AT AT AT AT AT AT AT AT GT
208534 AC * 10 19/20 AC AC AC AC AC AC AC AC AC AA
210297 CA * 16 30/32 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CG CC
215790 TA * 16 29/32 TA TT TA TA TA TA TA TA TA TA TA TA TA CA TA TG
221169 CA * 10 18/20 CA TC CA CA CA CA CA CA CA CA
227047 AC * 11 21/22 AC AC AC AC AC AC AC AC AC AC GC
227669 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CT CA GA
230076 CA * 11 20/22 CA CA CA CA CT CG CA CA CA CA CA
237404 GA * 11 20/22 GA AA GA GC GA GA GA GA GA GA GA
246160 CA * 12 22/24 CA CA CA AA CA CA CA CA CA CA CA AA
253208 GT * 11 20/22 GT CT GT GT GT GT GT GT GT GT TT
254113 AG * 11 20/22 AG AG AG AG AG AG AG CG AG CG AG
254782 CA * 10 18/20 CA CA CA CA CA CA CT CG CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 260104
Total number of repeats detected.............. 40
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 1 2 1 3 8 5 9 0 0 0 0
15 to 19 1 1 1 0 1 3 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 1 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 2 3 1 4 11 6 10 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 2 TA = 5
3 AG + 1 GA + 0 CT + 0 TC = 4
10 GT + 6 TG + 11 CA + 4 AC = 31
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7299308|gb|AE003686.1|AE003686 Drosophila melanogaster genomic scaffold 142000013386035 section 11 of 105, complete sequence
Position Repeat Coverage Repeat
28177 CT * 11 20/22 CT CT CT CT TT CT CT CG CT CT CT
29501 TG * 11 20/22 TG TG TG TG TG CG AG TG TG TG TG
33172 TC * 10 18/20 TC TC TA TC TA TC TC TC TC TC
57315 AT * 10 18/20 AT AT TT AT AT AT AT AT AA AT
65477 GT * 10 19/20 GT GT GG GT GT GT GT GT GT GT
67600 CT * 19 35/38 CT CT CT TT CT CT AT CT CT CT CT CT CT CT CT CT CT CT TT
102965 GT * 10 18/20 GT GT AC GT GT GT GT GT GT GT
105248 GT * 11 20/22 GT GT GC TT GT GT GT GT GT GT GT
105382 TC * 15 27/30 TC TT TC TC TC TC TC TC TC TC TC TC TT TC TT
105864 TG * 10 18/20 TG TG TG TG TG TG TG TA TG TC
110598 GT * 11 20/22 GT GT GG GT GT GT GT AT GT GT GT
119389 AC * 12 22/24 AC AC CC AC AC AC AA AC AC AC AC AC
125237 TG * 15 27/30 TG TC TG TG TG TG TG TT TG TG TG TG TG TG TT
131210 CT * 12 22/24 CT TT CT CT CT CT CT CT CT TT CT CT
139138 TA * 13 24/26 TA TA TA CA AA TA TA TA TA TA TA TA TA
187959 GT * 12 22/24 GT TT GT GT GT GT GT GT GT CT GT GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 221927
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 1 0 0 1 0 2 5 1 2 0 0
15 to 19 0 0 0 0 0 0 1 0 1 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 1 0 0 1 0 3 5 2 3 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 1 TA = 2
0 AG + 0 GA + 3 CT + 2 TC = 5
5 GT + 3 TG + 0 CA + 1 AC = 9
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7299273|gb|AE003685.1|AE003685 Drosophila melanogaster genomic scaffold 142000013386035 section 10 of 105, complete sequence
Position Repeat Coverage Repeat
7419 CA * 10 18/20 CA AA CA CA CA GA CA CA CA CA
11979 CA * 12 22/24 CA CA CA CA TA CA CG CA CA CA CA CA
12388 GT * 11 21/22 GT GT GT AT GT GT GT GT GT GT GT
13400 TG * 13 25/26 TG TG TG TG TG TG TG TG TG TG CG TG TG
13574 CT * 12 22/24 CT CT CT CC CT CT CT CT CT CT CT AT
14516 AT * 10 18/20 AT AT AT AT AC AT GT AT AT AT
16341 AC * 11 21/22 AC AC AC AC AC AC AC AC GC AC AC
16576 CT * 17 31/34 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT AT TG
23695 CT * 17 32/34 CT CT CT CT CC CT CT CT TT CT CT CT CT CT CT CT CT
40595 CA * 13 24/26 CA GA CA CA CA CA CA CA CA CA TA CA CA
42982 GA * 20 36/40 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA AA CA GG AA
46297 TA * 12 22/24 TA TA TA TA TA TA TA TA TA TA TA AG
55685 AC * 11 20/22 AC AC AC TC AA AC AC AC AC AC AC
56896 CA * 13 24/26 CA TA CA CA CC CA CA CA CA CA CA CA CA
93734 CA * 11 20/22 CA CA AG CA CA CA CA CA CA CA CA
98696 AG * 20 36/40 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG GG TG GG AT
134335 TA * 13 24/26 TA TA TA TA TA TT TA TA TA TA TA TA TT
141012 AG * 10 18/20 AG AG AG TG AA AG AG AG AG AG
142854 CT * 23 42/46 CT CT AT CG CT CT CT CT CT CT CT CT CT CT CT CT CT AT CT CA CT CT CT
144221 CA * 10 18/20 CA CA CG CA TA CA CA CA CA CA
148593 CA * 15 28/30 CA GA CA CA CA CA CA CA CA CA CA CG CA CA CA
150636 TC * 15 27/30 TC GC TC TC TC TC TC TC TC TC TC TC TC TC CT
153495 AC * 16 29/32 AC AC AC AC AC AC AC AC AT AC AC GC AC AC AA AC
163323 AT * 11 20/22 AT AT AT AT AT AT AC AT AT AT AA
166170 TG * 10 18/20 TG TG TG TG TG GT TG TG TG TG
166200 TG * 11 20/22 TG TG TG AG TG TG TG TG TG TG TT
172728 CT * 10 18/20 CT CT CT TT TT CT CT CT CT CT
197035 TG * 11 20/22 TG TG CG TG CG TG TG TG TG TG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 224882
Total number of repeats detected.............. 28
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 2 1 0 2 6 4 1 0 2 0 0
15 to 19 0 0 0 0 1 1 0 0 1 2 0 0
20 to 24 0 0 1 1 0 0 0 0 0 1 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 2 2 1 3 7 4 1 1 5 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 2 TA = 4
2 AG + 1 GA + 5 CT + 1 TC = 9
1 GT + 4 TG + 7 CA + 3 AC = 15
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7299232|gb|AE003684.1|AE003684 Drosophila melanogaster genomic scaffold 142000013386035 section 9 of 105, complete sequence
Position Repeat Coverage Repeat
33094 TA * 11 20/22 TA CA TA TA TA TA TA TT TA TA TA
55934 AT * 42 77/84 AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AG TT TT AG AA AG
79171 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TT TG GG
121224 GT * 10 18/20 GT GT TT GT GT GT GT GA GT GT
133292 TA * 12 22/24 TA CA TA TA TA TA TA TA TA TA TA CA
133802 TG * 14 26/28 TG GG AG TG TG TG TG TG TG TG TG TG TG TG
134236 AC * 17 31/34 AC AC TC GC AC AC AC AC AC AC AC AC AC AC AC AC TC
134657 AC * 12 22/24 AC AC AC AC AC AC AC TC AC AC AA AC
144327 TG * 16 29/32 TG TG TG TG TG TG TG TG TG TG TG TG CG GG TC TG
144915 AC * 11 20/22 AC AC AC AC CC AC AC AC AC AC CC
145854 AC * 10 18/20 AC AC AC AT AC AC AC AC AC GC
145917 TG * 11 20/22 TG GG TG TG GG TG TG TG TG TG TG
147273 CA * 15 27/30 CA CT CG CA CA CA CA CA CA CA CA CA CA CA AA
148886 GA * 11 20/22 GA CA GG GA GA GA GA GA GA GA GA
149770 CA * 10 18/20 CA CA CA CA CA CA CA CA CA GG
151038 GA * 10 18/20 GA GA GA GA GA AA GA GA GT GA
157305 GT * 12 22/24 GT CG GT GT GT GT GT GT GT GT GT GT
157687 GT * 10 18/20 GT GT GC GT GT GT GT GT GA GT
164424 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GC GT TT
166304 GA * 10 18/20 GA GT GA GA AA GA GA GA GA GA
169277 TC * 10 18/20 TC TC GC TC TC TC TC TC TC GC
176813 GT * 11 20/22 GT GT GT GT GT GC GT GC GT GT GT
184398 GT * 10 18/20 GT GT GT GT GT GT GT GC GT AT
185301 AG * 13 24/26 AG AG AG AG AG AG AG AG AC AG AG GG AG
187425 GT * 10 18/20 GT GT GT AT GT GT GA GT GT GT
188706 AC * 10 18/20 AC AC AC TC GC AC AC AC AC AC
205662 AC * 10 18/20 AC AC AT AC AC AC AC AC TC AC
215163 TG * 10 18/20 TG TG TG TG TG TG CT TG TG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 219597
Total number of repeats detected.............. 28
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 2 1 3 5 1 4 7 1 0 0 0
15 to 19 0 0 0 0 1 1 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 1 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 2 1 3 6 2 5 7 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 2 TA = 3
1 AG + 3 GA + 0 CT + 1 TC = 5
7 GT + 5 TG + 2 CA + 6 AC = 20
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7299185|gb|AE003683.1|AE003683 Drosophila melanogaster genomic scaffold 142000013386035 section 8 of 105, complete sequence
Position Repeat Coverage Repeat
23343 GT * 12 22/24 GT CT GG GT GT GT GT GT GT GT GT GT
26082 TG * 16 29/32 TG TG TG TG TG TG TG TG TG TG TG TG TG CA TG GG
29413 CA * 13 24/26 CA GA CA CA CA CA CA CA CA CA CA CA CT
30296 AT * 13 25/26 AT AT AT AT AT AT AT AT AT GT AT AT AT
46231 TA * 12 22/24 TA TA TA TA TA TA TA TA TA TA TT TG
70386 CT * 11 20/22 CT CT CT CT CT CT AC CT CT CT CT
75159 GT * 15 27/30 GT GT GT GT AC GT GT GT GT GT GT GT GT GT AT
80629 AT * 12 22/24 AT AT AG AT AT AT AT AT AT AT AT AA
81015 GA * 10 18/20 GA GA GA GA TA GA GA GA GA GT
81757 AC * 10 18/20 AC AC AC GC AC AC AC AC AA AC
85588 AT * 10 18/20 AT AT AT AT AG AT AT AG AT AT
86339 TG * 11 21/22 TG TG GG TG TG TG TG TG TG TG TG
88129 AC * 10 18/20 AC AC AC AT AC AC AC TC AC AC
131205 GT * 10 19/20 GT GT GT GT GT GT GT GT GT TT
132551 AT * 10 18/20 AT AT AG AT AT AT AA AT AT AT
141954 CA * 11 20/22 CA TA CA CA CA CA CA CA CA CC CA
152344 TA * 13 24/26 TA TA TA TA TA TT TA TT TA TA TA TA TA
240978 CA * 10 18/20 CA CA CA CA CA CA CA CA GA AA
241781 CA * 13 24/26 CA GA CA CA CA CA CA CA CA CA CA CA CC
-----------------------------------------------------------------------------------------
Total sequence length......................... 242919
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 2 0 1 2 4 1 2 0 1 0 0
15 to 19 0 0 0 0 0 0 1 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 2 0 1 2 4 2 3 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 2 TA = 6
0 AG + 1 GA + 1 CT + 0 TC = 2
3 GT + 2 TG + 4 CA + 2 AC = 11
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7299142|gb|AE003682.1|AE003682 Drosophila melanogaster genomic scaffold 142000013386035 section 7 of 105, complete sequence
Position Repeat Coverage Repeat
24457 TG * 10 18/20 TG TG TG TT TG TG TG TG TG CG
35897 TA * 10 18/20 TA TA TA TA TT TA TG TA TA TA
38852 TG * 10 18/20 TG TG TG TG TG TG TG TA TT TG
48706 CA * 16 29/32 CA CA CA CA CA CA CA CA CA CA CA CA CA CT GC CA
52037 AC * 16 30/32 AC AC AC AC AC AT AC AC AC AC AC AC AC AC AC AG
55393 TA * 11 20/22 TA TA TA TA TA TA TA TA TA AA TT
61367 AG * 13 24/26 AG AG AC AG AG AG AG AG AG AG GG AG AG
62456 TA * 17 32/34 TA TG TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA
62869 TA * 10 18/20 TA TA TA TA TA CA TA TA TG TA
73607 CA * 10 18/20 CA CA CA TA CA CA CA GA CA CA
79939 CA * 18 33/36 CA CA CA CA CA CA CA CA CA CA CA CA CA CA GA CA GA GA
89427 GT * 10 18/20 GT GT GT TT GT GT GT GT GC GT
114924 CT * 11 20/22 CT CT CT CT CT CT CT CT CG CC CT
121283 AG * 10 19/20 AG AG AG AG AG AG AG AG AG CG
121502 TA * 10 18/20 TA TA TA TA TA TA TA TG CA TA
139699 CA * 10 18/20 CA TA CA CA CA CA CA CG CA CA
156387 AG * 10 18/20 AG AA AC AG AG AG AG AG AG AG
179999 TG * 15 27/30 TG TG TG CG TG AG TG TG TG TG TG TG TG TG TC
180178 CT * 10 18/20 CT CT CT CT CC AT CT CT CT CT
181000 GA * 12 22/24 GA GA GA GA GA GA GA GA GT GA GA AA
181105 AC * 10 18/20 AC AC GC AC GC AC AC AC AC AC
189685 AT * 16 29/32 AT AT AT AT AT AT AA AT AT AT AT AT AT GT TT AT
189902 GA * 13 24/26 GA TA GA GA GA GA GA GA GA GA GG GA GA
194959 AT * 10 18/20 AT AT AT CT AT GT AT AT AT AT
203802 AT * 12 22/24 AT AT AT AT AT AT AT AT AT AT AA AA
204998 GT * 10 18/20 GT GT GT GT GT GC GT GT GT GC
210143 AT * 11 20/22 AT AC AT AT AT AT AT AT AC AT AT
210565 AT * 11 20/22 AT AT AT AT AT AT AC AT AT AT AA
212580 CA * 18 33/36 CA TA CA CA CA CA CA CA CA CA CA CA TA CA CA CT CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 224230
Total number of repeats detected.............. 29
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 4 3 2 1 2 2 2 0 2 0 0
15 to 19 1 1 0 0 1 3 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 5 3 2 2 5 3 2 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 5 TA = 10
3 AG + 2 GA + 2 CT + 0 TC = 7
2 GT + 3 TG + 5 CA + 2 AC = 12
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7299105|gb|AE003681.1|AE003681 Drosophila melanogaster genomic scaffold 142000013386035 section 6 of 105, complete sequence
Position Repeat Coverage Repeat
26337 AT * 11 20/22 AT GA AT AT AT AT AT AT AT AT AT
37152 TG * 10 18/20 TG TG TG TG TG AG TG AG TG TG
40907 CA * 27 49/54 CA TA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA GG CA CA CA AT
42923 TA * 10 18/20 TA TA TA TA TA TT AA TA TA TA
46736 TC * 10 18/20 TC TT TT TC TC TC TC TC TC TC
47964 CA * 11 20/22 CA CT CA CA CA CA CA CA CA CA GA
50852 GT * 19 35/38 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GC GT GT CG
69799 CA * 12 23/24 CA CA CA CA CA CA CA CA CA CA CA CG
82069 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AC AG
140157 CA * 10 18/20 CA CA CA CA CA CG CA CA CT CA
140313 GT * 10 19/20 GT GT GT GG GT GT GT GT GT GT
146001 GT * 10 18/20 GT GT GT GT GC GT GT GT GT GC
147688 CA * 10 18/20 CA CA CA CA CA CA CA CA CT CG
159340 AT * 11 20/22 AT AT AT AT TT AT AT TT AT AT AT
164974 TC * 11 20/22 TC CC TC TC TC TC TC TC TC TT TC
186070 AC * 10 18/20 AC AC AC AC AC GC AT AC AC AC
186331 CA * 11 21/22 CA CA CA CA CA CA CA CA CA CA CT
192833 GT * 10 18/20 GT GT GT GT GT GT GT GA GT AT
199413 CA * 17 31/34 CA CA CA CA CA CA CA CA CA CA CA TA CT CA GA CA CA
201035 AG * 11 20/22 AG AG AG AG AG AG AG AG AG AG CA
205853 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA CA AG
208032 TG * 13 24/26 TG TG TG TG CG TC TG TG TG TG TG TG TG
208059 GT * 12 22/24 GT CT GT TT GT GT GT GT GT GT GT GT
211698 CA * 17 31/34 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA GA GC
215065 AT * 10 18/20 AT AT GT AT AT AT AC AT AT AT
215677 AG * 12 22/24 AG AG AG AG AG AG AG AG AG AG CG CG
224908 GT * 11 20/22 GT GT GT GT GT GT GT GT GC CT GT
233016 GT * 12 23/24 GT GT GT GT GT GT GT GT GT GT GT GA
237251 AT * 10 18/20 AT TT AT AT AT AT AT AT AT AC
241376 AC * 10 18/20 AC AC AC AC GC AC AC AC AC GC
255333 TG * 17 32/34 TG GC TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
263135 CA * 10 18/20 CA CA CA CA CA CA CA CA CT GA
274190 TG * 11 20/22 TG CG TG TG TG TG TG TG TG CG TG
274487 TG * 11 20/22 TG TG TT TT TG TG TG TG TG TG TG
275351 TA * 10 18/20 TA TA TA TA CA TA TA TA TA TT
284682 AT * 12 22/24 AT TT AT AT AT AT AT AT AT AT AT CT
291891 AC * 11 20/22 AC AC AC AA AC AC AC AC AC AC AT
296211 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA GA GA
297802 AT * 10 18/20 AT AT AT AT AC AT AT AT GT AT
298533 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TG TG TG TG GC TT
307404 GT * 13 25/26 GT GT GT GT GT GT GT GT GT GT GT GT GC
308126 GA * 10 18/20 GA GA GC GA GA GA GG GA GA GA
318118 AC * 10 18/20 AC AC AC AC AC AC AC GC AC AA
320487 CA * 11 20/22 CA CA GA CA CA CA CA CG CA CA CA
321677 AG * 17 31/34 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AT TT
327834 GA * 11 20/22 GA GA GA GA GA AA GA GC GA GA GA
-----------------------------------------------------------------------------------------
Total sequence length......................... 329391
Total number of repeats detected.............. 46
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 7 2 2 2 4 9 4 7 2 0 0 0
15 to 19 0 0 1 0 0 2 2 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 1 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 7 2 3 2 4 12 6 8 2 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
7 AT + 2 TA = 9
3 AG + 2 GA + 0 CT + 2 TC = 7
8 GT + 6 TG + 12 CA + 4 AC = 30
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7299062|gb|AE003680.1|AE003680 Drosophila melanogaster genomic scaffold 142000013386035 section 5 of 105, complete sequence
Position Repeat Coverage Repeat
26419 CA * 13 24/26 CA CA CT CA CA CA CA CA CT CA CA CA CA
35861 TG * 10 18/20 TG TG TG TG TG CA TG TG TG TG
44862 TG * 10 18/20 TG CA TG TG TG TG TG TG TG TG
44908 TG * 10 18/20 TG TG TG TT TG TG TG TT TG TG
49041 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG GC
50051 GT * 10 18/20 GT CT GT GT GT GT GT GT TT GT
75430 TA * 10 18/20 TA AA TA TA TA TA TA TA TA TG
97288 TG * 11 20/22 TG TG TG TG TG TG TT TG TG TG TA
97511 CA * 10 18/20 CA AA CA CT CA CA CA CA CA CA
131788 TC * 10 18/20 TC TC TC TT TC TC TC TC GC TC
159287 TA * 15 27/30 TA TT TA TA TA TT TA TA TA TA TA TA TA TA GA
186020 CT * 17 31/34 CT CT CT CT CT CT CT CT CT CT CT CT AT CT CT TT CG
193132 AT * 12 23/24 AT AT AT AT AT AT AT AT AT TT AT AT
196967 TG * 14 26/28 TG TG TG TG TG TG TG TG TG TA TG TG TG TA
199984 TA * 10 18/20 TA TA TA CA TA TA TA TA TA TC
207650 GT * 10 18/20 GT GT GA GT GT GT GT GT GT GC
207861 TA * 14 26/28 TA CA TA TA TA TA TA TA TA TA TG TA TA TA
212548 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AG AA
221561 TA * 10 18/20 TA TA TA CA TA CA TA TA TA TA
223362 AT * 21 38/42 AT AT AT CT AT AT AT AT AT AT AT AT AT AT AG AT AT AT AT AC AC
-----------------------------------------------------------------------------------------
Total sequence length......................... 242553
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 4 0 0 0 2 6 2 1 0 0 0
15 to 19 0 1 0 0 0 0 0 0 0 1 0 0
20 to 24 1 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 5 0 0 0 2 6 2 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 5 TA = 8
0 AG + 0 GA + 1 CT + 1 TC = 2
2 GT + 6 TG + 2 CA + 0 AC = 10
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7299041|gb|AE003679.1|AE003679 Drosophila melanogaster genomic scaffold 142000013386035 section 4 of 105, complete sequence
Position Repeat Coverage Repeat
2729 CA * 10 18/20 CA CA CA CA GG CA CA CA CA CA
4844 AC * 10 18/20 AC AC AC AC AC AC AC AC AC TA
5019 TG * 22 40/44 TG TG TG TG TG TG TG TG TA TG TG TG TG TG TG TG TG TG TG AG CT TG
9851 CA * 10 18/20 CA GA CA CA CA CA CA CA CA CC
13456 TG * 10 18/20 TG AA TG TG TG TG TG TG TG TG
13478 TG * 10 18/20 TG TG TG TG CG TG TC TG TG TG
15838 TG * 12 23/24 TG TA TG TG TG TG TG TG TG TG TG TG
19683 AC * 11 20/22 AC AC AC TC AC AC AC AC AC AA AC
21363 CA * 20 36/40 CA CA CC CA CA CA CG CA CA CA CA CA CA CA CA CA CA CA CA TG
24240 TG * 11 21/22 TG TG CG TG TG TG TG TG TG TG TG
25635 GT * 15 27/30 GT GT GT GT AT GT GT GT GT GT GT GT GT TT GC
28107 GT * 11 20/22 GT GT TC GT GT GT GT GT GT GT GT
33240 TG * 10 18/20 TG TG TG TG CG TG CG TG TG TG
33269 TG * 16 29/32 TG GG TG TG TG TG TG TG TG TG TG TG TG TG GA TG
33539 GT * 11 21/22 GT GT GT GT GT GT GT GT GT GT GG
43684 CA * 17 31/34 CA CC CG CA CA CA CA CA CA CA CA CA CA CA CA CT CA
45488 CA * 12 22/24 CA CA CA CA AA CA CA CA CA CG CA CA
50493 GT * 11 21/22 GT GT GT GT GT GT GT GT GT GT AT
52890 AT * 10 19/20 AT AT AT AT AT AT AT AT AG AT
53817 CA * 15 28/30 CA CA CA CA CA CA CA CA CA CA CA CA CA CA TT
56207 TG * 12 22/24 TG TG TG TG TG TG TG TG TT TG TG AG
57361 AC * 16 30/32 AC AC AT AC AC AC AC AC AC AC AC AC GC AC AC AC
57898 CA * 15 28/30 CA CA CA CA CA CA CA CA CA CA CA CA CG CA GA
58173 TG * 15 27/30 TG TA TG TG TG TG TG TG TG TG TG TG TA TG AG
58468 GT * 12 23/24 GT GT GT GT GT GT GT GT GT GT GA GT
65935 TG * 13 25/26 TG TG TG TG TG TG TG TG TG TG TG TG GG
67392 TG * 12 22/24 TG TG CG TG TG TG TG TG TG TG TG CG
99649 AC * 12 22/24 AC AC AC AC AC AC GC AC AC AT AC AC
106020 CA * 11 21/22 CA CA CA CA CA CA CA CA CA CA AA
111297 AC * 14 26/28 AC TC AC AC AC AC AC AC AC AC AC AC AC AG
117003 AT * 11 20/22 AT AT AT GT AT AT AT AT AT AT GT
119748 AT * 12 22/24 AT AT AT AC AT AT GT AT AT AT AT AT
124895 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TC AG
126621 CA * 12 23/24 CA CA CA CA CA CA CA CA CA CA CA CC
151966 TG * 13 24/26 TG CG TG TG TG TG TG CG TG TG TG TG TG
157755 AC * 11 20/22 AC AG GC AC AC AC AC AC AC AC AC
161669 CA * 10 18/20 CA CA CA CA CG CA AA CA CA CA
178018 TA * 10 18/20 TA TA TG TA TT TA TA TA TA TA
184248 CA * 10 18/20 CA CA CA CA CA CA CA AG CA CA
200171 TA * 12 22/24 TA TA CA TA TA TA TA TA TA TA TA TT
223504 TA * 12 23/24 TA GA TA TA TA TA TA TA TA TA TA TA
223531 AT * 16 30/32 AT AC AT AT AT AT AT AT AT AT AT AT AT GT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 229277
Total number of repeats detected.............. 42
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 3 0 0 5 7 10 4 0 0 0 0
15 to 19 1 0 0 0 1 3 2 1 0 0 0 0
20 to 24 0 0 0 0 0 1 1 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 3 0 0 6 11 13 5 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 3 TA = 7
0 AG + 0 GA + 0 CT + 0 TC = 0
5 GT + 13 TG + 11 CA + 6 AC = 35
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298993|gb|AE003678.1|AE003678 Drosophila melanogaster genomic scaffold 142000013386035 section 3 of 105, complete sequence
Position Repeat Coverage Repeat
1575 TA * 10 18/20 TA TA TA CA TA TA TA TA TA TG
9478 TC * 10 18/20 TC TC TC TC GT TC TC TC TC TC
100448 CA * 10 18/20 CA AG CA CA CA CA CA CA CA CA
100469 AC * 10 18/20 AC AC AC AC AC AC AT AC AA AC
109251 AG * 18 34/36 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG TT
154236 TA * 11 21/22 TA TC TA TA TA TA TA TA TA TA TA
155028 AT * 10 18/20 AT AT AT AT AT AT AT TT AC AT
158190 GT * 10 18/20 GT GT GT GT GT GT GT TT GT GC
170089 CA * 10 18/20 CA CG CA CG CA CA CA CA CA CA
173494 CA * 10 18/20 CA CA CA CA CA CA CA TG CA CA
176695 AG * 12 22/24 AG AA AG AG AG AG AG AG AG AG AT AG
177044 TG * 10 19/20 TG TG TG TG TG TG TG TG TA TG
180873 GT * 10 18/20 GT GT GT GT GT GT TT GT GT GC
190461 TG * 12 22/24 TG TG TG TG TG TG TC TG TG TC TG TG
203109 TG * 16 29/32 TG TG TG TG TG TG TA TG TG TG TG TG TG TG TA TT
204804 AT * 10 18/20 AT AT AT AT AT AA AT AC AT AT
216348 TC * 10 18/20 TC TC TC TC TC TC TC TC TG CC
216369 CT * 17 32/34 CT CT CT CC CT CT TT CT CT CT CT CT CT CT CT CT CT
217557 CA * 18 33/36 CA CA CT CA CA CA CA CA CA CA CA CA CA CA CA CG GA CA
218839 TG * 10 18/20 TG GG TG TG TG TG TG TA TG TG
220864 TG * 10 18/20 TG TG TA TG TG TG TG TA TG TG
221903 TG * 11 21/22 TG TG TG TG TG TA TG TG TG TG TG
227014 CA * 10 18/20 CA CG CA CA CA CA CA TA CA CA
227630 GT * 11 20/22 GT GT AT GT GT GT GC GT GT GT GT
233389 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AC AT GC
-----------------------------------------------------------------------------------------
Total sequence length......................... 234151
Total number of repeats detected.............. 25
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 2 1 0 2 4 5 3 2 0 0 0
15 to 19 0 0 1 0 0 1 1 0 0 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 2 2 0 2 5 6 3 2 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 2 TA = 4
2 AG + 0 GA + 1 CT + 2 TC = 5
3 GT + 6 TG + 5 CA + 2 AC = 16
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298966|gb|AE003677.1|AE003677 Drosophila melanogaster genomic scaffold 142000013386035 section 2 of 105, complete sequence
Position Repeat Coverage Repeat
5683 AT * 11 20/22 AT AT AT AC AC AT AT AT AT AT AT
22839 CA * 18 34/36 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CT AA
94204 TA * 18 33/36 TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA TA TT TG
94356 GT * 11 20/22 GT GT GC GT GT GT GT GA GT GT GT
101290 CT * 10 18/20 CT CT CT CT CA CT AT CT CT CT
106403 GT * 11 20/22 GT GC GT AT GT GT GT GT GT GT GT
139181 GA * 15 27/30 GA GT GA GA GA GA GA GA GA GA GA GA GA GA TC
166648 CA * 15 27/30 CA CA CA CA CA CA CA CA CA CA CA CA CC AA AA
178309 TG * 11 20/22 TG CA TG TG TG TG TG TG TG TG TG
180106 GA * 12 22/24 GA AA GA GA GA GA GA GA GA GA GA GC
198647 CT * 10 19/20 CT AT CT CT CT CT CT CT CT CT
209789 GT * 12 22/24 GT GT GT GC GT GT GT GT GT GA GT GT
216129 TC * 13 25/26 TC TC TC TC TC TC TC TC TC TC TC TG TC
-----------------------------------------------------------------------------------------
Total sequence length......................... 227894
Total number of repeats detected.............. 13
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 0 0 1 0 0 1 3 1 2 0 0
15 to 19 0 1 0 1 0 2 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 1 0 2 0 2 1 3 1 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 1 TA = 2
0 AG + 2 GA + 2 CT + 1 TC = 5
3 GT + 1 TG + 2 CA + 0 AC = 6
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298935|gb|AE003676.1|AE003676 Drosophila melanogaster genomic scaffold 142000013386035 section 1 of 105, complete sequence
Position Repeat Coverage Repeat
12480 TG * 11 20/22 TG GG TG CG TG TG TG TG TG TG TG
50841 AT * 10 19/20 AT AT AT AT AT AT AT AT AC AT
54619 CA * 12 22/24 CA CA GG CA CA CA CA CA CA CA CA CA
88834 AC * 17 31/34 AC AC AC AC GC AC AT AC AC AC AC AC AC AC AC TC AC
101225 TA * 12 22/24 TA TA TA TA TG TA TA TA TA TA TA CA
110117 CA * 13 25/26 CA CA CA CA CA CA CA CA CA CA CA GA CA
123716 AT * 16 29/32 AT AT AT AT AT AT AT AT AT AC AT AT AT AT AC TT
200144 AT * 10 18/20 AT AC AT AT AT AC AT AT AT AT
231241 AG * 18 33/36 AG AG AG AG AG AG AG AA AG AG AG AG AG AG CG AG AC AG
234002 AG * 10 18/20 AG AG AG AA AG AG AG AG GG AG
-----------------------------------------------------------------------------------------
Total sequence length......................... 257394
Total number of repeats detected.............. 10
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 1 1 0 0 2 1 0 0 0 0 0
15 to 19 1 0 1 0 1 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 1 2 0 1 2 1 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 1 TA = 4
2 AG + 0 GA + 0 CT + 0 TC = 2
0 GT + 1 TG + 2 CA + 1 AC = 4
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289843|gb|AE003199.1|AE003199 Drosophila melanogaster genomic scaffold 142000013386024, complete sequence
Position Repeat Coverage Repeat
1851 TA * 10 18/20 TA TA TA TA TA TA TA TA TA GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 56273
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 1 0 0 0 0 0 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 1 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 1 TA = 1
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 0 TG + 0 CA + 0 AC = 0
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289003|gb|AE003355.1|AE003355 Drosophila melanogaster genomic scaffold 142000013385307, complete sequence
Position Repeat Coverage Repeat
13534 TA * 10 18/20 TA TT TA TA TA TA GA TA TA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 13970
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 1 0 0 0 0 0 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 1 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 1 TA = 1
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 0 TG + 0 CA + 0 AC = 0
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Di-nucleotide repeats in Drosophila melanogaster Chromosome-Arm-3R Genomic Scaffolds
Minimum di-nucleotide repeating units = 10 (allowing maximum 10% mismatch)
Total 2923 repeats covering 65356 / 71478 base pairs
Length distribution of all di-nucleotide repeats
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
no. of repeat-units 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 >=50
total repeats 997 668 424 279 46 151 113 78 56 14 29 15 13 8 2 4 4 3 1 0 3 6 2 0 0 0 1 0 1 0 0 0 1 0 0 0 0 0 1 0 3
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Length distribution of all di-nucleotide repeats in range
no. of repeat-units 10-14 15-19 20-24 25-29 30-34 35-39 40-44 45-49 >=50
total repeats--> 2414 412 67 12 11 2 1 1 3
AT 356 43 12 4 2 1 1 0 1
TA 233 37 8 0 5 0 0 0 1
AG 81 24 8 1 0 0 0 0 0
GA 59 8 1 0 0 0 0 0 0
AC 275 48 5 1 0 0 0 0 0
CA 440 85 5 5 2 0 0 0 0
TG 443 78 15 0 1 1 0 0 0
GT 357 57 7 0 0 0 0 1 1
TC 68 11 2 1 0 0 0 0 0
CT 102 21 4 0 1 0 0 0 0
GC 0 0 0 0 0 0 0 0 0
CG 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------
Sequence-wise distribution of di-nucleotide repeats
Sequence Sequence-length total repeats detected
gi|7316099|gb|AE0026 0 bp 0
gi|7296880|gb|AE0036 95401 bp 5
gi|7296839|gb|AE0036 300275 bp 17
gi|7296808|gb|AE0036 274591 bp 9
gi|7296793|gb|AE0036 302700 bp 14
gi|7296751|gb|AE0036 294507 bp 20
gi|7296683|gb|AE0036 297266 bp 20
gi|7296642|gb|AE0036 303626 bp 16
gi|7296607|gb|AE0036 291545 bp 17
gi|7316097|gb|AE0026 0 bp 0
gi|7298913|gb|AE0036 145786 bp 22
gi|7298877|gb|AE0036 298028 bp 16
gi|7298860|gb|AE0036 309357 bp 26
gi|7298812|gb|AE0036 301601 bp 27
gi|7298787|gb|AE0036 309023 bp 16
gi|7316093|gb|AE0027 0 bp 0
gi|7302106|gb|AE0037 249284 bp 8
gi|7302062|gb|AE0037 232064 bp 15
gi|7302043|gb|AE0037 225108 bp 8
gi|7302015|gb|AE0037 232000 bp 14
gi|7301994|gb|AE0037 225879 bp 20
gi|7301969|gb|AE0037 236109 bp 15
gi|7301938|gb|AE0037 239003 bp 16
gi|7301915|gb|AE0037 226905 bp 30
gi|7301871|gb|AE0037 228448 bp 9
gi|7301817|gb|AE0037 235127 bp 19
gi|7301790|gb|AE0037 224100 bp 26
gi|7301774|gb|AE0037 234161 bp 62
gi|7301730|gb|AE0037 242815 bp 20
gi|7301701|gb|AE0037 225155 bp 42
gi|7301683|gb|AE0037 225894 bp 13
gi|7301668|gb|AE0037 239098 bp 42
gi|7301658|gb|AE0037 231691 bp 32
gi|7301637|gb|AE0037 203557 bp 50
gi|7301615|gb|AE0037 230995 bp 37
gi|7301591|gb|AE0037 224614 bp 34
gi|7301559|gb|AE0037 198310 bp 29
gi|7301528|gb|AE0037 226471 bp 9
gi|7301501|gb|AE0037 225036 bp 17
gi|7301475|gb|AE0037 191851 bp 23
gi|7301458|gb|AE0037 256242 bp 26
gi|7301445|gb|AE0037 226763 bp 8
gi|7301396|gb|AE0037 221822 bp 17
gi|7301360|gb|AE0037 226342 bp 21
gi|7301339|gb|AE0037 225478 bp 28
gi|7301280|gb|AE0037 269518 bp 31
gi|7301241|gb|AE0037 227398 bp 16
gi|7301193|gb|AE0037 228472 bp 12
gi|7301169|gb|AE0037 256636 bp 43
gi|7301134|gb|AE0037 204469 bp 27
gi|7301086|gb|AE0037 226318 bp 23
gi|7301057|gb|AE0037 219341 bp 19
gi|7301010|gb|AE0037 239327 bp 16
gi|7300988|gb|AE0037 217674 bp 15
gi|7300960|gb|AE0037 233673 bp 30
gi|7300931|gb|AE0037 233313 bp 39
gi|7300894|gb|AE0037 234569 bp 35
gi|7300851|gb|AE0037 223815 bp 32
gi|7300816|gb|AE0037 226102 bp 19
gi|7300796|gb|AE0037 238433 bp 45
gi|7300765|gb|AE0037 260278 bp 40
gi|7300751|gb|AE0037 231849 bp 33
gi|7300718|gb|AE0037 240910 bp 16
gi|7300681|gb|AE0037 230303 bp 13
gi|7300654|gb|AE0037 234369 bp 41
gi|7300622|gb|AE0037 225829 bp 10
gi|7300601|gb|AE0037 221365 bp 34
gi|7300591|gb|AE0037 230977 bp 35
gi|7300549|gb|AE0037 231828 bp 8
gi|7300524|gb|AE0037 242709 bp 35
gi|7300503|gb|AE0037 239525 bp 18
gi|7300476|gb|AE0037 254846 bp 21
gi|7300442|gb|AE0037 232361 bp 36
gi|7300414|gb|AE0037 253747 bp 32
gi|7300390|gb|AE0037 222917 bp 52
gi|7300335|gb|AE0037 224896 bp 31
gi|7300322|gb|AE0037 224263 bp 37
gi|7300296|gb|AE0037 218434 bp 41
gi|7300262|gb|AE0037 253172 bp 35
gi|7300241|gb|AE0037 217756 bp 14
gi|7300211|gb|AE0037 225968 bp 17
gi|7300193|gb|AE0037 223098 bp 4
gi|7300166|gb|AE0037 231403 bp 25
gi|7300133|gb|AE0037 225844 bp 21
gi|7300108|gb|AE0037 226200 bp 19
gi|7300075|gb|AE0037 236427 bp 15
gi|7300041|gb|AE0037 224939 bp 23
gi|7300026|gb|AE0037 223652 bp 21
gi|7299964|gb|AE0037 235414 bp 28
gi|7299945|gb|AE0037 229655 bp 20
gi|7299915|gb|AE0037 254987 bp 27
gi|7299886|gb|AE0037 232744 bp 15
gi|7299861|gb|AE0037 220572 bp 28
gi|7299833|gb|AE0037 225419 bp 30
gi|7299815|gb|AE0037 225974 bp 31
gi|7299778|gb|AE0037 208418 bp 34
gi|7299755|gb|AE0037 229065 bp 39
gi|7299726|gb|AE0036 225691 bp 18
gi|7299688|gb|AE0036 225299 bp 33
gi|7299670|gb|AE0036 226860 bp 15
gi|7299628|gb|AE0036 228143 bp 20
gi|7299572|gb|AE0036 225655 bp 8
gi|7299542|gb|AE0036 226108 bp 22
gi|7299506|gb|AE0036 226496 bp 19
gi|7299460|gb|AE0036 227817 bp 27
gi|7299436|gb|AE0036 226775 bp 47
gi|7299394|gb|AE0036 210299 bp 38
gi|7299379|gb|AE0036 215984 bp 48
gi|7299341|gb|AE0036 224795 bp 14
gi|7299333|gb|AE0036 260104 bp 40
gi|7299308|gb|AE0036 221927 bp 16
gi|7299273|gb|AE0036 224882 bp 28
gi|7299232|gb|AE0036 219597 bp 28
gi|7299185|gb|AE0036 242919 bp 19
gi|7299142|gb|AE0036 224230 bp 29
gi|7299105|gb|AE0036 329391 bp 46
gi|7299062|gb|AE0036 242553 bp 20
gi|7299041|gb|AE0036 229277 bp 42
gi|7298993|gb|AE0036 234151 bp 25
gi|7298966|gb|AE0036 227894 bp 13
gi|7298935|gb|AE0036 257394 bp 10
gi|7289843|gb|AE0031 56273 bp 1
gi|7289003|gb|AE0033 13970 bp 1
--------------------------------------------------------------------------------------------------------
Total 27859683 bp 2923
--------------------------------------------------------------------------------------------------------
-------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
420 AT + 284 TA = 704
114 AG + 68 GA + 128 CT + 82 TC = 392
423 GT + 538 TG + 537 CA + 329 AC = 1827
0 GC + 0 CG = 0
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Frequency distribution of di-nucleotides repeated for 20 times or more
21 AT + 14 TA = 35
9 AG + 1 GA + 5 CT + 3 TC = 18
9 GT + 17 TG + 12 CA + 6 AC = 44
0 GC + 0 CG = 0
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Total repeats >= 40 bp = 97
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© Division of Biochemical Sciences, National Chemical Laboratory, Pune 411008, INDIA