Tetra-Nucleotide Repeats in Genomic Sequences
Tetra-Nucleotide Repeats in
Drosophila melanogaster Chromosome-Arm-3L Genomic Scaffolds
Genomic sequence...
gi|7316100|gb|AE002584.1|AE002584 Drosophila melanogaster genomic scaffold 142000013386045, complete sequence
Position Repeat Coverage Repeat
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Total sequence length......................... 0
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 0
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Genomic sequence...
gi|7292550|gb|AE003483.1|AE003483 Drosophila melanogaster genomic scaffold 142000013386045 section 17 of 17, complete sequence
Position Repeat Coverage Repeat
6885 GCCT * 5 19/20 GCCT GCCT GCCC GCCT GCCT
7303 ACAT * 5 18/20 ACAT ACAT ACAT AGGT ACAT
18453 TATC * 5 18/20 TATC TATC TATC TGTG TATC
38031 AACA * 5 18/20 AACA AGCA AATA AACA AACA
46229 TTTG * 8 30/32 TTTG TTTG TTCG TTTG TTTG TTTG TTTG TCTG
69815 GTTG * 8 29/32 GTTG GTTG GTTG CTTG GTTG GTTG GATG GTCG
81447 AACC * 5 18/20 AACC AACC AACC AACC ACCG
135388 TTGT * 7 26/28 TTGT TTGT TTGT TTGT TTGT TTGT TTTG
136039 GCCA * 5 18/20 GCCA GCCA GCCA GCCA GCAG
136769 TAAA * 5 19/20 TAAA TAAA TAAA TAAA TCAA
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Total sequence length......................... 175489
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 10
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Frequency of Tetra-Nucleotide Repeats
AACA-1 AACC-1 ACAT-1 TAAA-1 TATC-1 TTTG-1 TTGT-1 GTTG-1
GCCA-1 GCCT-1
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Genomic sequence...
gi|7292521|gb|AE003482.1|AE003482 Drosophila melanogaster genomic scaffold 142000013386045 section 16 of 17, complete sequence
Position Repeat Coverage Repeat
16874 AACA * 5 18/20 AACA AACA AACA TACA AAAA
36397 GTTT * 5 18/20 GTTT ATTT GTTT GTTT GCTT
56206 TTTG * 5 19/20 TTTG TTTG TTTG TTTA TTTG
67729 TTTA * 5 18/20 TTTA TATA TTTA TTTA TTGA
82983 AATT * 5 18/20 AATT AATT AATT AATT ATTG
90223 ATTC * 5 19/20 ATTC ATTC ATTC ATTT ATTC
101146 TTAT * 5 18/20 TTAT TTAT TTAT ATAT TTTT
136248 CAGT * 5 18/20 CAGT CAGC CAGT CAGT CAGC
137135 GAAA * 5 18/20 GAAA AAAA TAAA GAAA GAAA
146791 GTCA * 11 41/44 GTCA GTCA TTCA GTCA GTCA GTCA GTCA GTCA GTTA GTCA TTCA
207353 ATAG * 5 18/20 ATAG ATAT ATAG ATAT ATAG
208387 GGCT * 8 31/32 GGCT GGCT GGCT GGCT GGCT GGCT GGTT GGCT
216154 CAGA * 5 18/20 CAGA TAGA CAGT CAGA CAGA
240406 GTCC * 5 18/20 GTCC ATCC GTCC ATCC GTCC
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Total sequence length......................... 301682
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AATT-1 AACA-1 ATAG-1 ATTC-1 TTAT-1 TTTA-1 TTTG-1 GAAA-1
GTTT-1 GTCA-1 GTCC-1 GGCT-1 CAGA-1 CAGT-1
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Genomic sequence...
gi|7292481|gb|AE003481.1|AE003481 Drosophila melanogaster genomic scaffold 142000013386045 section 15 of 17, complete sequence
Position Repeat Coverage Repeat
29197 CAAA * 5 18/20 CAAA CAAA AACA CAAA CAAA
33803 CGAT * 7 26/28 CGAT CCCT CGAT CGAT CGAT CGAT CGAT
36393 TTAT * 6 22/24 TTAT TTAT TTAT GTAT TTAT ATAT
37926 GAAT * 5 18/20 GAAT GAAT AAAT GAAT AAAT
81654 ATTT * 5 18/20 ATTT ATTT ATTT GTTT GTTT
86270 ATTT * 5 18/20 ATTT ATTT CTCT ATTT ATTT
115209 TGGA * 5 18/20 TGGA TGTG TGGA TGGA TGGA
126688 AACT * 8 29/32 AACT AACC AACT AACT AACT AACT AACT AAAG
126874 ACCA * 7 26/28 ACCA ACCA ACCA AACC ACCA ACCA ACCA
134432 ATTT * 5 18/20 ATTT ATGT ATTT ATTT TTTT
142358 ATTG * 5 19/20 ATTG ATTG ATGG ATTG ATTG
164507 AATC * 5 18/20 AATC AATC AGTC CATC AATC
193933 CTTT * 6 22/24 CTTT CTTT CTTT CTTT CTTT CGTG
195102 AAAT * 5 19/20 AAAT AAAT AAAT AAAT AAAC
215756 CTGG * 6 22/24 CTGG TTGG TTGG CTGG CTGG CTGG
234846 ATTA * 5 18/20 ATTA AGTA ATTA AGTA ATTA
257835 AACT * 5 18/20 AACT AACC AACT AACT AACC
290969 GCTA * 5 18/20 GCTA GCTA GCTA GCTG GCTG
308546 TGTT * 5 18/20 TGTT TGTT TGTT TGTC TGTC
-----------------------------------------------------------------------------
Total sequence length......................... 319765
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 AATC-1 AACT-2 ATTA-1 ATTT-3 ATTG-1 ACCA-1 TTAT-1
TGTT-1 TGGA-1 GAAT-1 GCTA-1 CAAA-1 CTTT-1 CTGG-1 CGAT-1
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Genomic sequence...
gi|7292415|gb|AE003480.1|AE003480 Drosophila melanogaster genomic scaffold 142000013386045 section 14 of 17, complete sequence
Position Repeat Coverage Repeat
77036 ATAA * 5 18/20 ATAA ATAA ATAA ATTA TTAA
81180 GTGA * 5 18/20 GTGA GTGA GTGA GTGG GTGT
87659 ACAT * 5 18/20 ACAT ACAT ACAT ATGT ACAT
121826 CAGC * 5 18/20 CAGC CAGT CAGC CAGC CAGT
145225 ATAA * 5 18/20 ATAA ATAA ATAT ATAA TTAA
146774 TTTA * 5 19/20 TTTA TTTA TTTA TTTA TTTT
228194 TGAT * 6 22/24 TGAT TGAC TGAT TGAT TGGT TGAT
240160 GGAC * 5 18/20 GGAC GAAC GGAC GAAC GGAC
297934 AAAT * 5 18/20 AAAT AAAG TAAT AAAT AAAT
-----------------------------------------------------------------------------
Total sequence length......................... 310450
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 9
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 ATAA-2 ACAT-1 TTTA-1 TGAT-1 GTGA-1 GGAC-1 CAGC-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7292381|gb|AE003479.1|AE003479 Drosophila melanogaster genomic scaffold 142000013386045 section 13 of 17, complete sequence
Position Repeat Coverage Repeat
3022 GCTG * 5 18/20 GCTG GCTG GCTG GCTG GCCA
3426 AAAT * 5 18/20 AAAT AAAG AAAT ATAT AAAT
80142 TGTA * 6 22/24 TGTA TGTA CATA TGTA TGTA TGTA
81258 CTTT * 5 18/20 CTTT CTTT CTTT CTGA CTTT
144177 GGTC * 5 18/20 GGTC GGTC GCTC GGTC GGTT
156605 CCAA * 5 18/20 CCAA CCAA CCGA CCAA CAAA
166315 AGGT * 5 19/20 AGGT AGGT AGGT AGGG AGGT
167555 ATCT * 5 19/20 ATCT ATCT ACCT ATCT ATCT
174781 CAAA * 6 22/24 CAAA CAAA CAAA CAAA CAAA CATT
177691 CATC * 6 22/24 CATC CATC CATC CAGC CATC CGTC
184569 GTCT * 6 22/24 GTCT GTCT GTCT GTCT GTCT ATGT
242772 CAAT * 5 18/20 CAAT CAAT CAAT CAAT CACG
266842 GGAT * 5 18/20 GGAT GGAT GGGT GTAT GGAT
303668 ATTC * 6 22/24 ATTC ATTT ATTC ATTC ATTC ATTG
-----------------------------------------------------------------------------
Total sequence length......................... 309883
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 ATTC-1 ATCT-1 AGGT-1 TGTA-1 GTCT-1 GGAT-1 GGTC-1
GCTG-1 CAAA-1 CAAT-1 CATC-1 CTTT-1 CCAA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7292360|gb|AE003478.1|AE003478 Drosophila melanogaster genomic scaffold 142000013386045 section 12 of 17, complete sequence
Position Repeat Coverage Repeat
16711 CATA * 5 18/20 CATA CATA TATT CATA CATA
31184 GTAC * 5 18/20 GTAC GTAC ATAC ATAC GTAC
33046 TGTT * 5 18/20 TGTT TATT TGTT TGTT TGTA
34047 TTTC * 5 20/20 TTTC TTTC TTTC TTTC TTTC
39062 GTTT * 5 18/20 GTTT GTTT GTCC GTTT GTTT
42644 TGTC * 5 18/20 TGTC TGTC TGTC TCTG TGTC
46085 TCCA * 6 22/24 TCCA TTCG TCCA TCCA TCCA TCCA
47053 GATC * 5 18/20 GATC GATC GATC GATC GAAT
47601 ATAA * 5 18/20 ATAA ATAA ATAA AAAA TTAA
79369 GTCC * 5 18/20 GTCC GTCC GTCC GTCC GCCA
81645 TTCA * 5 18/20 TTCA TTTA TACA TTCA TTCA
85896 TCAG * 7 26/28 TCAG TCAG TCAG TCAG CCAG TCAG TCGG
86559 TCAG * 5 19/20 TCAG TCAG TCAG CCAG TCAG
87343 CTAT * 5 20/20 CTAT CTAT CTAT CTAT CTAT
121620 GGTT * 5 18/20 GGTT GGTG GGTT GGTT GGTG
125980 GTCA * 5 20/20 GTCA GTCA GTCA GTCA GTCA
145196 GATC * 6 22/24 GATC GATC GATC GATC GATT GAAC
155255 TGTC * 5 18/20 TGTC TGAC TGGC TGTC TGTC
160357 TTGT * 7 26/28 TTGT TTGC CTGT TTGT TTGT TTGT TTGT
163152 ATGG * 6 22/24 ATGG ACGG ATGG ATGG ATGA ATGG
182877 TATG * 5 18/20 TATG TATG TATG TATG GCTG
183841 GTTT * 5 20/20 GTTT GTTT GTTT GTTT GTTT
263527 TAAA * 5 18/20 TAAA AAAA AAAA TAAA TAAA
294744 GACT * 5 20/20 GACT GACT GACT GACT GACT
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Total sequence length......................... 317218
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 24
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
ATAA-1 ATGG-1 TAAA-1 TATG-1 TTTC-1 TTGT-1 TTCA-1 TGTT-1
TGTC-2 TCAG-2 TCCA-1 GATC-2 GACT-1 GTAC-1 GTTT-2 GTCA-1
GTCC-1 GGTT-1 CATA-1 CTAT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7292303|gb|AE003477.1|AE003477 Drosophila melanogaster genomic scaffold 142000013386045 section 11 of 17, complete sequence
Position Repeat Coverage Repeat
16614 CAAA * 6 23/24 CAAA CAAA CAAA CAAA CAAA CAAC
17749 TATG * 5 19/20 TATG TATG TATG TATG TATA
34935 CAGT * 5 18/20 CAGT TAGT CAGT TAGT CAGT
76414 TTGT * 6 23/24 TTGT TTGT TTGT TTGT TTGT TTGC
94294 TATG * 5 18/20 TATG TATG TATG TACG TATA
134625 ACAT * 5 18/20 ACAT ACAA ACAT GCAT ACAT
170448 CAAT * 6 22/24 CAAT CTAT CAAT CAAT CAAT CGAT
177510 TGGC * 5 19/20 TGGC TAGC TGGC TGGC TGGC
214640 CCAA * 5 19/20 CCAA CCAA ACAA CCAA CCAA
243807 GTCC * 5 19/20 GTCC GTCC GTCC GTCT GTCC
-----------------------------------------------------------------------------
Total sequence length......................... 304734
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 10
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
ACAT-1 TATG-2 TTGT-1 TGGC-1 GTCC-1 CAAA-1 CAAT-1 CAGT-1
CCAA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7292275|gb|AE003476.1|AE003476 Drosophila melanogaster genomic scaffold 142000013386045 section 10 of 17, complete sequence
Position Repeat Coverage Repeat
42354 ACAT * 5 20/20 ACAT ACAT ACAT ACAT ACAT
57781 TACA * 5 18/20 TACA TACA TATA TACA TACG
74949 AAAT * 5 19/20 AAAT AAAT AAAT AAAT AAAC
102894 GGTG * 5 18/20 GGTG GGTG GGTG TGTG CGTG
115533 GTTT * 5 18/20 GTTT GTTT GTTT GTTT GGGT
157105 AATA * 5 19/20 AATA AATA AATA AATA AACA
157547 TATG * 5 18/20 TATG TATG TATA TATG TATA
201784 ACTC * 8 30/32 ACTC ACTC ACTC ACTC ACTC ACAC ACCC ACTC
232142 ACAT * 6 22/24 ACAT AGAT ACAT ACAT ACAT ACAC
239917 TTTA * 6 22/24 TTTA TTTA TTTA TTTA TTTA TGTG
270664 CATA * 5 18/20 CATA CATA CATA CATA TACA
-----------------------------------------------------------------------------
Total sequence length......................... 306945
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 11
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 AATA-1 ACAT-2 ACTC-1 TATG-1 TACA-1 TTTA-1 GTTT-1
GGTG-1 CATA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7292236|gb|AE003475.1|AE003475 Drosophila melanogaster genomic scaffold 142000013386045 section 9 of 17, complete sequence
Position Repeat Coverage Repeat
9785 GGTC * 5 18/20 GGTC GGTC GTTT GGTC GGTC
37425 TAAA * 6 24/24 TAAA TAAA TAAA TAAA TAAA TAAA
49609 CGAA * 5 18/20 CGAA CGAA CGAA CGAA CCAG
55300 TGTA * 5 18/20 TGTA TGCA TGTA TGTA TATA
84963 TCCA * 5 18/20 TCCA TTTA TCCA TCCA TCCA
105628 TTAT * 5 18/20 TTAT TTAT TTAT TTTT ATAT
120862 GTAT * 5 19/20 GTAT GTAT GTAT GTAT ATAT
124406 CAGT * 8 30/32 CAGT CAGT CAGT CAGT CAGT CAGT TAGT AAGT
179312 TACA * 5 18/20 TACA AGCA TACA TACA TACA
189071 CAAC * 10 37/40 CAAC CAAC CAAC CAAC CAAC CAAC CAAG CAAG CAAA CAAC
210878 CAAT * 5 19/20 CAAT CAAT CATT CAAT CAAT
211396 TATG * 5 18/20 TATG TATG TATG TGTG TATA
216222 ATCA * 5 18/20 ATCA ATCA ATCA ATCA GTCG
252562 ACAA * 5 19/20 ACAA ACAA ACAA ACAT ACAA
278149 GCAA * 5 18/20 GCAA GCAA ACAA GCAA ACAA
295697 TGTT * 5 20/20 TGTT TGTT TGTT TGTT TGTT
-----------------------------------------------------------------------------
Total sequence length......................... 304231
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
ATCA-1 ACAA-1 TAAA-1 TATG-1 TACA-1 TTAT-1 TGTA-1 TGTT-1
TCCA-1 GTAT-1 GGTC-1 GCAA-1 CAAT-1 CAAC-1 CAGT-1 CGAA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7292198|gb|AE003474.1|AE003474 Drosophila melanogaster genomic scaffold 142000013386045 section 8 of 17, complete sequence
Position Repeat Coverage Repeat
20584 GGCA * 5 18/20 GGCA GCCA GGCA GCCA GGCA
66690 AAAT * 5 19/20 AAAT CAAT AAAT AAAT AAAT
68170 GGCT * 6 22/24 GGCT GGGT GGCT GGCT GGTT GGCT
101497 GTTA * 8 29/32 GTTA GTTA GTTA GTTG GTTA GTTT GTTA GTTC
190744 ATGT * 5 18/20 ATGT ATGT ATGT ATGT ACAT
195416 CTTT * 5 19/20 CTTT CTTT CTTT CTTT CTGT
235660 AGAC * 5 18/20 AGAC AGAC CGAC AGAC AGAT
-----------------------------------------------------------------------------
Total sequence length......................... 306364
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 7
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 ATGT-1 AGAC-1 GTTA-1 GGCA-1 GGCT-1 CTTT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7292168|gb|AE003473.1|AE003473 Drosophila melanogaster genomic scaffold 142000013386045 section 7 of 17, complete sequence
Position Repeat Coverage Repeat
23730 GCTC * 5 18/20 GCTC CCTC TCTC GCTC GCTC
41772 GCCA * 5 18/20 GCCA GCCA GTCA GCCA GCCG
46973 TTTA * 5 18/20 TTTA TTTA TTTA TTAA CTTA
85928 TGTC * 6 23/24 TGTC TGTC TGTC TGCC TGTC TGTC
137725 GCAG * 8 30/32 GCAG GCAG GCAG GCAG GCAG GCAG TCAG TCAG
139469 AACG * 5 18/20 AACG AACG AATG AATG AACG
139523 TGGA * 6 22/24 TGGA TGGA TGGA TGGA ACGA TGGA
140600 CATA * 6 22/24 CATA CGTA CTTA CATA CATA CATA
159041 TTGA * 6 22/24 TTGA TTGA TTGA CTGA CTGA TTGA
167216 AACA * 6 23/24 AACA GACA AACA AACA AACA AACA
168079 TTTA * 5 18/20 TTTA TTTA TTTA TTTT TTTT
181175 CCAT * 9 33/36 CCAT CCAT CCAT CCAT CCAT CCAT CCAC CCAT TTAT
192566 ATGT * 5 18/20 ATGT ATGT ATGT ATGC TTGT
250093 TGTT * 5 18/20 TGTT GGTT GGTT TGTT TGTT
277386 TTAA * 5 18/20 TTAA TTAA GTAA TTAA GTAA
-----------------------------------------------------------------------------
Total sequence length......................... 304106
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 15
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AACA-1 AACG-1 ATGT-1 TTAA-1 TTTA-2 TTGA-1 TGTT-1 TGTC-1
TGGA-1 GCAG-1 GCTC-1 GCCA-1 CATA-1 CCAT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7292093|gb|AE003472.1|AE003472 Drosophila melanogaster genomic scaffold 142000013386045 section 6 of 17, complete sequence
Position Repeat Coverage Repeat
44953 TACA * 9 34/36 TACA TACA TACA TACA TACA TACA TACA TACA TGCC
46577 ACTA * 5 19/20 ACTA ACTA ACTA GCTA ACTA
48939 TGTT * 5 18/20 TGTT TGTT TATT TGTT TTTT
86038 GTTT * 5 19/20 GTTT GTTT CTTT GTTT GTTT
93259 TTGG * 6 22/24 TTGG TTGG TTGA TTGG TTAG TTGG
95653 TTTA * 5 18/20 TTTA TTTA TTTA TTTA AATA
98488 TTGG * 9 33/36 TTGG TTGG TTGG TTGG TTGG TTGG TTGG TTGA ATGT
139892 CCAG * 5 18/20 CCAG CGAG CCAG CGAG CCAG
185765 AAAC * 5 18/20 AAAC AAAA AAAA AAAC AAAC
-----------------------------------------------------------------------------
Total sequence length......................... 303191
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 9
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAC-1 ACTA-1 TACA-1 TTTA-1 TTGG-2 TGTT-1 GTTT-1 CCAG-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7292041|gb|AE003471.1|AE003471 Drosophila melanogaster genomic scaffold 142000013386045 section 5 of 17, complete sequence
Position Repeat Coverage Repeat
8858 ATAG * 5 18/20 ATAG ATAG ATAG ATAG TTAT
32706 GGTT * 5 18/20 GGTT GGTT GGTT AGTC GGTT
49277 GACT * 8 29/32 GACT GACT GACT GACT GACT GACT GACT TTCC
121008 GTGG * 5 18/20 GTGG GTGG GTGG ATGG GTGT
128200 CATT * 5 19/20 CATT CATT CATT CATT CACT
137741 CCCA * 5 18/20 CCCA CCCA CCCA GCCA GCCA
142219 GATA * 8 29/32 GATA GATA GATA GCTA TATA GATA GATA GATG
143624 CTTC * 5 19/20 CTTC CTTT CTTC CTTC CTTC
158977 CTGC * 5 18/20 CTGC CCGC CTGC CTGT CTGC
160998 CAGT * 8 29/32 CAGT CCGT CAAT CAGT CAGT CAGT CAGT CAAT
162197 TCCG * 6 22/24 TCCG TCCG TTCG TTCG TCCG TCCG
207255 GCCA * 6 24/24 GCCA GCCA GCCA GCCA GCCA GCCA
207720 CGTT * 5 19/20 CGTT CGTT CGTT CGTT CATT
208837 CTGA * 8 31/32 CTGA CTGA CTGA CTGA CTGA CTGA CTGA CTGC
213711 GGTT * 6 22/24 GGTT GGTT GGTT GGTT CGTT AGTT
214182 TCCA * 6 22/24 TCCA TCCA TCCA TCCA TCAA TCAA
227589 CCTT * 6 23/24 CCTT CCTT CCTT CCTT CCTT CCGT
230979 TTAA * 5 18/20 TTAA TAAA TAAA TTAA TTAA
234679 TATT * 8 29/32 TATT TATT TATT TATT TATT TAAT AATT TAGT
246157 GCTC * 5 19/20 GCTC TCTC GCTC GCTC GCTC
250785 GCTG * 5 19/20 GCTG GCTG GCTG GCTG ACTG
-----------------------------------------------------------------------------
Total sequence length......................... 301109
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 21
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
ATAG-1 TATT-1 TTAA-1 TCCA-1 TCCG-1 GATA-1 GACT-1 GTGG-1
GGTT-2 GCTG-1 GCTC-1 GCCA-1 CATT-1 CAGT-1 CTTC-1 CTGA-1
CTGC-1 CGTT-1 CCTT-1 CCCA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7292017|gb|AE003470.1|AE003470 Drosophila melanogaster genomic scaffold 142000013386045 section 4 of 17, complete sequence
Position Repeat Coverage Repeat
41908 ATCA * 5 19/20 ATCA ATCA ATCA ATCA GTCA
46024 TCAG * 6 23/24 TCAG TCAG TCAG TCAG TCAG TCAC
69604 CCAC * 6 22/24 CCAC CCAA GCAC CCAC CCAC CCAC
80378 TGTA * 5 19/20 TGTA TGTA TATA TGTA TGTA
90884 GTAA * 6 23/24 GTAA GTAA GTAA GTAA GTAT GTAA
100968 CTTT * 5 18/20 CTTT CTTT CTTT CTTT CCTC
115753 CTCG * 5 19/20 CTCG CTCG CTCG CTCG CTCC
117083 TTTG * 5 18/20 TTTG TTTG TGTT TTTG TTTG
122275 TATT * 5 18/20 TATT TTTT TTTT TATT TATT
124255 GTGG * 5 18/20 GTGG GTGG TGGG GTGG GTGG
125868 TTGT * 5 18/20 TTGT TTGT GTGT GTGT TTGT
133787 GGTG * 5 19/20 GGTG GGTG GGTG GGTG GTTG
159914 CTCA * 6 22/24 CTCA CTCA CTCA CTCA CTCA CTAC
162641 ATTT * 5 18/20 ATTT ATTT ATTT ATTT AATA
163684 AAAT * 5 18/20 AAAT AAAT AAAT AAAT ATTT
166463 ACAG * 6 22/24 ACAG ACCG ACAG ACCG ACAG ACAG
172796 AACA * 5 18/20 AACA AGCA AACA AACA AATA
184826 GCCA * 5 19/20 GCCA GCCA GCTA GCCA GCCA
188105 TACA * 8 29/32 TACA TAGA TACA TACA TACA TACA TACG TAGA
195378 TTGG * 5 18/20 TTGG ATGG TTGG GTGG TTGG
204936 GCCA * 5 18/20 GCCA CCCA GCCA CCCA GCCA
222222 ATGG * 8 30/32 ATGG ATGG ATGG ATGG ATGG TTGG ATGG TTGG
245711 AAAT * 5 19/20 AAAT AAAT AAAT AAGT AAAT
246106 TTAT * 5 18/20 TTAT TTCT GTAT TTAT TTAT
257648 CTGG * 8 29/32 CTGG CTGG CTGG CTGG CTGG CTGA CTGG CTCC
271071 AGTC * 5 18/20 AGTC AGTC AGTC TGTC TGTC
279343 TAAA * 5 19/20 TAAA TAAA TAAA TAAA TAAC
296389 CAAA * 5 18/20 CAAA CAAA AACA CAAA CAAA
-----------------------------------------------------------------------------
Total sequence length......................... 302423
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 28
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-2 AACA-1 ATTT-1 ATGG-1 ATCA-1 AGTC-1 ACAG-1 TAAA-1
TATT-1 TACA-1 TTAT-1 TTTG-1 TTGT-1 TTGG-1 TGTA-1 TCAG-1
GTAA-1 GTGG-1 GGTG-1 GCCA-2 CAAA-1 CTTT-1 CTGG-1 CTCA-1
CTCG-1 CCAC-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7291982|gb|AE003469.1|AE003469 Drosophila melanogaster genomic scaffold 142000013386045 section 3 of 17, complete sequence
Position Repeat Coverage Repeat
2623 GAGC * 5 18/20 GAGC GAGC GAGC GACC GAGT
5534 GACT * 5 18/20 GACT GACT GACT GACT AGCT
14350 AAAG * 5 18/20 AAAG AAGG AAAG AATG AAAG
15587 CCGA * 10 37/40 CCGA CCGA CCGA CCGA CCGA CCGA CCGA CCGA CCGA CGAT
15780 GTAT * 5 18/20 GTAT ATAT GTAT GTAT GTAG
34825 CATA * 5 18/20 CATA CATA CATA CATA CGTG
50291 AAAC * 5 19/20 AAAC AAAC AAAC AAAC AAAA
58063 GCTC * 5 18/20 GCTC GCTC CCTC TCTC GCTC
65597 TAAT * 5 19/20 TAAT TAAT AAAT TAAT TAAT
104677 ATTT * 6 23/24 ATTT ATTT ATAT ATTT ATTT ATTT
159372 CGTC * 6 22/24 CGTC CGGC CGTC CGTC TGTC CGTC
164245 TCAG * 8 30/32 TCAG TCAG TCAG TCAG TCAG TCAG ACCG TCAG
185228 ACAA * 6 23/24 ACAA ACAA ACAA ACAA ACAA ACAC
189833 TACA * 6 22/24 TACA TAAT TACA TACA TACA TACA
194719 GAGT * 5 18/20 GAGT GAAC GAGT GAGT GAGT
194752 AGTG * 5 18/20 AGTG AGTG AATG AGTG AATG
194777 ACGG * 5 18/20 ACGG ATGG ATGG ACGG ACGG
252828 GTAC * 6 22/24 GTAC GTAC GTAC GTAC GTGT GTAC
-----------------------------------------------------------------------------
Total sequence length......................... 301868
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAG-1 AAAC-1 ATTT-1 AGTG-1 ACAA-1 ACGG-1 TAAT-1 TACA-1
TCAG-1 GAGT-1 GAGC-1 GACT-1 GTAT-1 GTAC-1 GCTC-1 CATA-1
CGTC-1 CCGA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7291959|gb|AE003468.1|AE003468 Drosophila melanogaster genomic scaffold 142000013386045 section 2 of 17, complete sequence
Position Repeat Coverage Repeat
22245 TATG * 5 19/20 TATG TATG TATG TATG TATA
67529 CATC * 5 18/20 CATC CATC CATC GATC GATC
74765 TTGG * 5 18/20 TTGG TCGG TTGG TCGG TTGG
74804 TGGA * 5 18/20 TGGA TGGT TGGA TGGC TGGA
90735 CATA * 5 18/20 CATA TATA CATA TATA CATA
90756 ATAC * 5 18/20 ATAC ATAT ATAC ATAT ATAC
90780 ATAC * 5 18/20 ATAC ATAT ATAC ATAT ATAC
90804 ATAC * 5 18/20 ATAC ATAT ATAC ATAT ATAC
90828 ATAC * 5 18/20 ATAC ATAT ATAC ATAT ATAC
90852 ATAC * 5 18/20 ATAC ATAT ATAC ATAT ATAC
90876 ATAC * 5 18/20 ATAC ATAT ATAC ATAT ATAC
90900 ATAC * 5 18/20 ATAC ATAT ATAC ATAT ATAC
90924 ATAC * 5 18/20 ATAC ATAT ATAC ATAT ATAC
91484 TATG * 5 18/20 TATG TATA TATG TATA TATG
91508 TATG * 5 18/20 TATG TATA TATG TATA TATG
91532 TATG * 5 18/20 TATG TATA TATG TATA TATG
91556 TATG * 5 18/20 TATG TATA TATG TATA TATG
91580 TATG * 5 18/20 TATG TATA TATG TATA TATG
91604 TATG * 5 18/20 TATG TATA TATG TATA TATG
91628 TATG * 5 18/20 TATG TATA TATG TATA TATG
91652 TATG * 5 18/20 TATG TATA TATG TATA TATG
91676 TATG * 5 18/20 TATG TATA TATG TATA TATG
91700 TATG * 5 18/20 TATG TATA TATG TATA TATG
91724 TATG * 5 18/20 TATG TATA TATG TATA TATG
91748 TATG * 5 18/20 TATG TATA TATG TATA TATG
91772 TATG * 5 18/20 TATG TATA TATG TATA TATG
91796 TATG * 5 18/20 TATG TATA TATG TATA TATG
91820 TATG * 5 18/20 TATG TATA TATG TATA TATG
166537 GACA * 5 18/20 GACA GCCA GGCA GACA GACA
178668 GACT * 6 22/24 GACT GAGT GACT GACT GACT GGCT
209851 TGAA * 5 18/20 TGAA TGAA TGAA TGCA TGAT
212626 CGAT * 5 19/20 CGAT CGAT CGAT GGAT CGAT
221892 GATT * 5 18/20 GATT GATT GATT GATT GAAA
238980 TACA * 5 18/20 TACA TACA TACG TACA TATA
257949 CAAA * 5 19/20 CAAA CAAA CAAA CAAA TAAA
285749 TTTA * 5 19/20 TTTA TTTA TTTA TTTA TTTT
289272 ACAT * 5 18/20 ACAT ACAT ACAT ACAT ATGT
-----------------------------------------------------------------------------
Total sequence length......................... 310120
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 37
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
ATAC-8 ACAT-1 TATG-16 TACA-1 TTTA-1 TTGG-1 TGAA-1 TGGA-1
GATT-1 GACA-1 GACT-1 CAAA-1 CATA-1 CATC-1 CGAT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7291904|gb|AE003467.1|AE003467 Drosophila melanogaster genomic scaffold 142000013386045 section 1 of 17, complete sequence
Position Repeat Coverage Repeat
53054 TTTG * 5 18/20 TTTG TTTG TTTA TTTG TTTT
53987 ATAC * 6 22/24 ATAC ATAC ATAC ATAC ATAC ATGT
56629 ATTT * 5 19/20 ATTT ATTT ATTT ATTT AATT
57933 CAAA * 5 18/20 CAAA CAAA AAAA CAAA CACA
87791 ACAT * 5 18/20 ACAT ACAT AAAA ACAT ACAT
105832 TGTA * 6 22/24 TGTA TGTA TATA TGTA TGTA TGAA
109396 ACAT * 5 18/20 ACAT ACAT ACAT ACAT AATT
109501 TATG * 6 22/24 TATG TACC TATG TATG TATG TATG
134853 TGTA * 5 19/20 TGTA TATA TGTA TGTA TGTA
188416 ATAC * 5 18/20 ATAC ATAC ACAC ATAT ATAC
250611 ACAT * 5 18/20 ACAT ACTT ACAT ACTT ACAT
-----------------------------------------------------------------------------
Total sequence length......................... 298644
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 11
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
ATAC-2 ATTT-1 ACAT-3 TATG-1 TTTG-1 TGTA-2 CAAA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7316103|gb|AE002602.1|AE002602 Drosophila melanogaster genomic scaffold 142000013386050, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------
Total sequence length......................... 0
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------
Genomic sequence...
gi|7295475|gb|AE003567.1|AE003567 Drosophila melanogaster genomic scaffold 142000013386050 section 54 of 54, complete sequence
Position Repeat Coverage Repeat
11410 CATT * 5 18/20 CATT CATT CATT CATT CAAC
14147 GGCT * 5 18/20 GGCT GGTT GGAT GGCT GGCT
17618 CATT * 6 22/24 CATT CATT CCAT CATT CATT CATT
50503 ACAT * 5 18/20 ACAT GCAT ACAT ACAT ATAT
56671 CACT * 5 19/20 CACT CACT CACT CACT CATT
103991 ATTT * 5 18/20 ATTT ATTT ATTT TTTT TTTT
-----------------------------------------------------------------------------
Total sequence length......................... 104808
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 6
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
ATTT-1 ACAT-1 GGCT-1 CATT-2 CACT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7295459|gb|AE003566.1|AE003566 Drosophila melanogaster genomic scaffold 142000013386050 section 53 of 54, complete sequence
Position Repeat Coverage Repeat
34178 TATG * 5 18/20 TATG CATG TATA TATG TATG
56453 TCAG * 5 18/20 TCAG TTAG TCAT TCAG TCAG
58354 ATCT * 5 18/20 ATCT ATCT ATCT ATCT AACG
60770 GTTT * 5 18/20 GTTT GTTT GTTT TTTT GTCT
74812 TACA * 5 18/20 TACA TACA TGCA AACA TACA
81689 GATA * 12 45/48 GATA GATA GATA GATA GATA GATA GATG GGTA GATA GATA GATG GATA
143743 TATG * 5 19/20 TATG TATG TATG TGTG TATG
150050 CTCG * 5 18/20 CTCG CTCG CTCG CTCG CGCA
184902 CATC * 5 18/20 CATC CATC CATC CAAC CGTC
189893 ACAG * 6 22/24 ACAG GTAG ACAG ACAG ACAG ACAG
239478 CAGT * 5 19/20 CAGT CAGT CATT CAGT CAGT
245115 ACTG * 7 26/28 ACTG ACTG ACTG ACTG ACTG ACGA ACTG
245610 TATT * 6 22/24 TATT TATT TTTT TATT TATT TTTT
248665 TTTA * 5 18/20 TTTA TTTA TTTA TTTA ATTT
272393 GATG * 7 27/28 GATG GATG GATG GATG GATG AATG GATG
275867 ACAT * 8 29/32 ACAT ACAT GCAT ACAT ACAT ACAT ACAC ACTT
-----------------------------------------------------------------------------
Total sequence length......................... 286716
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
ATCT-1 ACAT-1 ACAG-1 ACTG-1 TATT-1 TATG-2 TACA-1 TTTA-1
TCAG-1 GATA-1 GATG-1 GTTT-1 CATC-1 CAGT-1 CTCG-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7295423|gb|AE003565.1|AE003565 Drosophila melanogaster genomic scaffold 142000013386050 section 52 of 54, complete sequence
Position Repeat Coverage Repeat
4299 GGCA * 5 19/20 GGCA GGCA GGCA GGCA GGCG
17454 AGCC * 5 19/20 AGCC AGGC AGCC AGCC AGCC
28696 ACAT * 7 26/28 ACAT ACAG ACAT ACAT ACAT ACAT ATAT
29280 AAGT * 5 18/20 AAGT ATGT AAGT AAGT AAAT
69303 TTAG * 6 22/24 TTAG TTAG TTAG TTAG TTAG TTGC
76194 CTGC * 5 19/20 CTGC CTGC CTGC CTGC CTGG
96647 TCAG * 12 45/48 TCAG TCAC TCAT TCAG TCAG TCAG TCAG TCAG TCAG TCAG TCAG TCGG
105591 AAAT * 5 18/20 AAAT AAAT AAAC AAAT AAAG
110469 ACTG * 9 33/36 ACTG ACTC ACTG ACTG ACTG ACTG ACTG ACTG AATT
119271 CATA * 5 19/20 CATA CATA CATA CATA TATA
134546 CACT * 5 19/20 CACT CACT CACT CACT GACT
135095 GCAG * 5 19/20 GCAG GCAG GCAG GCAG GCAC
143981 GTGG * 5 18/20 GTGG GTGG TTGG GTCG GTGG
157519 TCAT * 8 30/32 TCAT TCAT TCAT TCAT TCAT TCAT TCAT AAAT
164065 AACA * 5 20/20 AACA AACA AACA AACA AACA
164544 GTCT * 6 22/24 GTCT GTCT GTCT GCCT GTCT GTCG
185627 ACAT * 6 22/24 ACAT ACAT ACAT ACAT AAGT ACAT
194409 AAGA * 5 18/20 AAGA AAGA CAGA AAGA AAGC
202579 AGCG * 5 18/20 AGCG AGCA AGCG AGAG AGCG
202641 GCTC * 5 18/20 GCTC TCTC GCTC GCTC GCAC
204024 CAGT * 5 18/20 CAGT CTGT CAGT CAGT CGGT
246139 CCAA * 5 18/20 CCAA CCAA CCAA CCAA CAAC
260900 TATT * 6 22/24 TATT TATA TATT TATT TATA TATT
271544 CACC * 5 18/20 CACC CACC CACC CATC CACA
-----------------------------------------------------------------------------
Total sequence length......................... 286782
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 24
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 AAGA-1 AAGT-1 AACA-1 AGCG-1 AGCC-1 ACAT-2 ACTG-1
TATT-1 TTAG-1 TCAT-1 TCAG-1 GTGG-1 GTCT-1 GGCA-1 GCAG-1
GCTC-1 CATA-1 CAGT-1 CACT-1 CACC-1 CTGC-1 CCAA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7295378|gb|AE003564.1|AE003564 Drosophila melanogaster genomic scaffold 142000013386050 section 51 of 54, complete sequence
Position Repeat Coverage Repeat
5032 TGGG * 5 18/20 TGGG TGGT TGGG TGGT TGGG
28510 ATCT * 5 18/20 ATCT ATCT ATCT ATCT ATTG
31588 CAGA * 6 22/24 CAGA CAAA CAGA CAGA CAGA CAGT
70627 GTCA * 6 22/24 GTCA GTCA GTCA CTCA GTCA GTTA
98450 TGGG * 5 18/20 TGGG TGGG TGGT TGAG TGGG
138880 GAAT * 5 18/20 GAAT GAAT GAAT GACT GACT
138929 GTCA * 5 18/20 GTCA GTCC GTCA GTCA CTCA
160275 CAGT * 6 23/24 CAGT CAGT CAGT CAGT CAGT CTGT
181963 TTAA * 5 18/20 TTAA TTAA TTAA GTAA TTAT
262467 CCGA * 7 26/28 CCGA CCGA CCGA CCGG CCGA CCGA CTGA
266969 CAGC * 6 24/24 CAGC CAGC CAGC CAGC CAGC CAGC
280144 CACT * 5 18/20 CACT CACT CACA CACA CACT
289835 CAGA * 5 19/20 CAGA CAGA CGGA CAGA CAGA
291447 ACAA * 7 26/28 ACAA ACAA ACAA ACAA ACAA GCAA ACGA
-----------------------------------------------------------------------------
Total sequence length......................... 301840
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
ATCT-1 ACAA-1 TTAA-1 TGGG-2 GAAT-1 GTCA-2 CAGA-2 CAGT-1
CAGC-1 CACT-1 CCGA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7295346|gb|AE003563.1|AE003563 Drosophila melanogaster genomic scaffold 142000013386050 section 50 of 54, complete sequence
Position Repeat Coverage Repeat
19846 CGAT * 5 18/20 CGAT CGAT CGGT CCAT CGAT
38591 GCTG * 5 18/20 GCTG GCTG AATG GCTG GCTG
54804 TTTA * 5 18/20 TTTA TGTA TTTA TTTG TTTA
63583 TCTG * 5 18/20 TCTG TCTG TCGG TCTG CCTG
78840 TAAT * 5 18/20 TAAT TAAT TTAT TAAT TAGT
81419 CCGT * 6 22/24 CCGT CCGT TCGT CCGT CCGT CCGG
83433 TTTA * 5 18/20 TTTA TTTA TTTA TTTA TTAT
89608 GCTG * 7 27/28 GCTG GCTG CCTG GCTG GCTG GCTG GCTG
91209 GACT * 5 19/20 GACT GACT GACT GGCT GACT
111287 CCTA * 7 26/28 CCTA CCTA CCTA CCTA CCTA CCTA CCGG
200490 CATC * 5 18/20 CATC CATC CATC ACTC CATC
225720 TTGA * 5 18/20 TTGA TTAA TTGA TTCA TTGA
267725 TAAT * 5 18/20 TAAT TAAT GTAT TAAT TAAT
-----------------------------------------------------------------------------
Total sequence length......................... 277325
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 13
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
TAAT-2 TTTA-2 TTGA-1 TCTG-1 GACT-1 GCTG-2 CATC-1 CGAT-1
CCTA-1 CCGT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7295332|gb|AE003562.1|AE003562 Drosophila melanogaster genomic scaffold 142000013386050 section 49 of 54, complete sequence
Position Repeat Coverage Repeat
10329 AAAC * 5 18/20 AAAC AAAC AAAC AAAC GAAA
22876 ATGG * 5 18/20 ATGG GTGG ATGG TTGG ATGG
30989 GTAT * 5 18/20 GTAT TTAT GTAT GTGT GTAT
75211 TGTT * 5 18/20 TGTT TGTT TGTT TGGT TTTT
76920 CCCA * 5 18/20 CCCA ACCA CCCA ACCA CCCA
108134 CTGT * 9 33/36 CTGT TTGT TTGT CTGT CTGT CTGT CTGT CTAT CTGT
149661 TGGC * 5 19/20 TGGC TGGC TGGC TGGC TGGA
152561 AATG * 5 18/20 AATG AATG AATA AATG AATA
165935 AAAC * 5 19/20 AAAC AAAC AAAC AAAC AAAG
167575 ATTT * 6 23/24 ATTT ATTT ATTT ATTT ATTT TTTT
171244 ACGG * 5 18/20 ACGG ACGG ACAG ACGA ACGG
192754 TGAC * 5 18/20 TGAC TGAC TGAC TCAC TGAT
192778 TGAC * 5 18/20 TGAC TGAC TGAA TGAC TGAA
197938 ACTG * 10 37/40 ACTG ACTG ACTG ACTG ACTG ACTG GATG ACTG AATG ACTG
199724 GGTC * 6 22/24 GGTC GGTC GGTC GGTT GGTC GGTT
211266 TGTT * 5 19/20 TGTT TGTT TGTT TGTT TGCT
241361 AGAA * 5 19/20 AGAA AGAA TGAA AGAA AGAA
246939 GGAT * 5 18/20 GGAT GGAT GGTT GGAT GGCT
-----------------------------------------------------------------------------
Total sequence length......................... 249584
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAC-2 AATG-1 ATTT-1 ATGG-1 AGAA-1 ACTG-1 ACGG-1 TGAC-2
TGTT-2 TGGC-1 GTAT-1 GGAT-1 GGTC-1 CTGT-1 CCCA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7295317|gb|AE003561.1|AE003561 Drosophila melanogaster genomic scaffold 142000013386050 section 48 of 54, complete sequence
Position Repeat Coverage Repeat
7474 GTTT * 5 18/20 GTTT GTTT GCTT GATT GTTT
12628 TTTC * 5 19/20 TTTC TTTC TTTC TTTC TTTT
44857 ATAC * 5 18/20 ATAC GTAC ATAC ATTC ATAC
60344 GATA * 6 22/24 GATA GATA GATA GATG GATG GATA
71621 ATAA * 5 18/20 ATAA ATAA ATAC AGAA ATAA
85703 CAGT * 6 22/24 CAGT CAGT CAGT CAGT CACT CAGC
96573 GTCT * 5 18/20 GTCT CTCT GTCT GTCT GTCA
103005 TCAG * 5 19/20 TCAG TCAG CCAG TCAG TCAG
133492 TTTA * 5 18/20 TTTA TTTG GTTA TTTA TTTA
144042 AAAT * 5 18/20 AAAT ATAT AAAT ATAT AAAT
153962 CATC * 6 22/24 CATC CATC CATC CATC CATC CTCC
203045 TTAG * 5 18/20 TTAG TTAG TTAG TTAG TTGC
205459 AAAC * 5 18/20 AAAC AAAC AAAC AAAA AAAA
206785 CGCT * 5 18/20 CGCT CGCT CGCT CTCT CTCT
209686 AAAC * 5 18/20 AAAC AAAC AAAA AAAA AAAC
-----------------------------------------------------------------------------
Total sequence length......................... 274307
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 15
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 AAAC-2 ATAA-1 ATAC-1 TTAG-1 TTTA-1 TTTC-1 TCAG-1
GATA-1 GTTT-1 GTCT-1 CATC-1 CAGT-1 CGCT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7295278|gb|AE003560.1|AE003560 Drosophila melanogaster genomic scaffold 142000013386050 section 47 of 54, complete sequence
Position Repeat Coverage Repeat
53326 ACAA * 5 18/20 ACAA ACAA ACAA ACAA AACA
54217 GTCA * 6 22/24 GTCA GTCC GTCA CTCA GTCA GTCA
71436 CGGA * 5 19/20 CGGA CGGA CGGA CGGA CAGA
79336 TAAA * 7 26/28 TAAA TAAA TAAA TAAA TAAA AAAA AAAA
88571 GATA * 6 23/24 GATA GATA GATA TATA GATA GATA
139249 CAAT * 5 18/20 CAAT CAAT CAAA CAAT CAAG
162411 AAAT * 5 19/20 AAAT AAAT AAAT AAAT AAGT
162804 ACAT * 5 18/20 ACAT ACAT AGGT ACAT ACAT
167043 ACAA * 5 18/20 ACAA ACAA ACAG ACTA ACAA
214410 TAAA * 5 18/20 TAAA TAAA TAAA TATA TATA
221420 CCAC * 5 18/20 CCAC CCAC CCAC CCAA CCAG
230667 ATAC * 9 33/36 ATAC AAAC ATAC ATGC ATAC ATAC ATAC ATAC ATAT
250971 TATT * 5 18/20 TATT TATT TATT TATT TACA
-----------------------------------------------------------------------------
Total sequence length......................... 285495
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 13
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 ATAC-1 ACAA-2 ACAT-1 TAAA-2 TATT-1 GATA-1 GTCA-1
CAAT-1 CGGA-1 CCAC-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7295229|gb|AE003559.1|AE003559 Drosophila melanogaster genomic scaffold 142000013386050 section 46 of 54, complete sequence
Position Repeat Coverage Repeat
16569 TTTG * 5 18/20 TTTG TCTG TCTG TTTG TTTG
17187 TTTA * 5 18/20 TTTA TTTA TTTA TTTA TTAT
30913 TTAT * 5 18/20 TTAT TTAT TTAT TTAC TTGT
45264 TGAG * 5 18/20 TGAG TGTG TGAA TGAG TGAG
46634 CATA * 5 20/20 CATA CATA CATA CATA CATA
67975 TTAT * 5 18/20 TTAT TTAT TTAT TTAT GTTT
86764 ATGT * 5 18/20 ATGT ATGT ATGT ATGT ACAT
87788 TTTG * 5 18/20 TTTG TTTG GCTG TTTG TTTG
102263 TTAT * 5 18/20 TTAT GTAT TTAT TTAT CTAT
114767 TCCG * 5 18/20 TCCG TCCG TCCG TCCG TCGC
164863 GTGG * 6 22/24 GTGG GTGT GTGA GTGG GTGG GTGG
173627 GTCA * 5 18/20 GTCA GTCA GTCA GCCA GCCA
177070 AACA * 5 18/20 AACA AACA AATA AACA AGCA
190111 TTCG * 5 19/20 TTCG TTCG TTCG TTCG TTCC
199237 AGTG * 5 18/20 AGTG AGTG AGTG AGTG AGAC
227601 TATG * 5 18/20 TATG TACA TATG TATG TATG
251918 GTTG * 7 26/28 GTTG GTTG TTAG GTTG GTTG GTTG GTTG
253355 GAGG * 5 18/20 GAGG GAGG GAGT GAGT GAGG
257178 GCAG * 5 18/20 GCAG GCAG GCGG GCTG GCAG
258454 ATAC * 7 26/28 ATAC ATAC ATAC ATAC GTAC ATAC ATGC
-----------------------------------------------------------------------------
Total sequence length......................... 269454
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AACA-1 ATAC-1 ATGT-1 AGTG-1 TATG-1 TTAT-3 TTTA-1 TTTG-2
TTCG-1 TGAG-1 TCCG-1 GAGG-1 GTTG-1 GTGG-1 GTCA-1 GCAG-1
CATA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7295193|gb|AE003558.1|AE003558 Drosophila melanogaster genomic scaffold 142000013386050 section 45 of 54, complete sequence
Position Repeat Coverage Repeat
6388 AAAT * 5 19/20 AAAT AAAT AAAT AAAT AATT
17587 AGAC * 5 18/20 AGAC AGAT AGAC AGAC AGCC
40366 TAGT * 5 19/20 TAGT TAGT TAGT AAGT TAGT
144423 TGGA * 5 18/20 TGGA TGGA TGGA TGGT TGGG
154802 GTCC * 6 22/24 GTCC GTCC GTCC GTAA GTCC GTCC
178903 TGCC * 6 23/24 TGCC TGCC TGCC TGCC TGCC TGAC
181381 TTTA * 5 18/20 TTTA TTTA TTTA TTTT TTTT
205229 ACTG * 5 18/20 ACTG ACTG AGTG ACCG ACTG
216286 TAAT * 5 18/20 TAAT TTAT TAAT TAAT TCAT
230185 AGAT * 6 22/24 AGAT AGAT AGAT AGAT GGAT GGAT
230209 GGAT * 5 18/20 GGAT GGAT GGAT GGAT GACT
-----------------------------------------------------------------------------
Total sequence length......................... 273744
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 11
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 AGAT-1 AGAC-1 ACTG-1 TAAT-1 TAGT-1 TTTA-1 TGGA-1
TGCC-1 GTCC-1 GGAT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7295172|gb|AE003557.1|AE003557 Drosophila melanogaster genomic scaffold 142000013386050 section 44 of 54, complete sequence
Position Repeat Coverage Repeat
24803 CTGG * 5 18/20 CTGG CTGG CTGG CAGG CCGG
49845 ACTG * 5 18/20 ACTG ACTG AATG ACTA ACTG
49871 TGAC * 5 19/20 TGAC TGAC TGAC TGAC TGAT
67389 CAAG * 8 29/32 CAAG CAAG CAAG CAAG CAAG CAAG CAAC CACC
68272 AGTG * 5 18/20 AGTG AGTT AGTG ACTG AGTG
70694 AGCC * 6 22/24 AGCC AGCC AGTC AGCC AGCC AGCG
159292 TCAA * 6 22/24 TCAA TCAA TCAA TCAA TCAA TCTC
173786 CTCA * 5 18/20 CTCA CTCT CTCT CTCA CTCA
176576 GTCA * 5 19/20 GTCA GTCA GTCA ATCA GTCA
180181 ATTT * 5 18/20 ATTT ATTT ATAA ATTT ATTT
181724 ATTT * 5 18/20 ATTT CTTT ATTT ATAT ATTT
191199 GGTG * 5 18/20 GGTG GGTG GCTG AGTG GGTG
193324 ATCT * 6 23/24 ATCT ATCT ATCT ATCT ATCT ATCC
197825 AATT * 5 18/20 AATT AAAT AATT GATT AATT
199050 TTTA * 6 22/24 TTTA TTTA TTTA TTTT TTTA TATA
206810 TATG * 5 19/20 TATG TATG TATG TATC TATG
216606 TTTA * 5 18/20 TTTA TATA TTTC TTTA TTTA
232753 TTTG * 5 18/20 TTTG TTTG TTTG TTGG TTTT
272854 AAAT * 5 18/20 AAAT AAAT AAAT AAAT CAAC
274376 TCAG * 5 18/20 TCAG TCAG TCAG TCAG GTAG
280205 TCCC * 5 18/20 TCCC TGCC TCCC CCCC TCCC
-----------------------------------------------------------------------------
Total sequence length......................... 286418
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 21
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 AATT-1 ATTT-2 ATCT-1 AGTG-1 AGCC-1 ACTG-1 TATG-1
TTTA-2 TTTG-1 TGAC-1 TCAA-1 TCAG-1 TCCC-1 GTCA-1 GGTG-1
CAAG-1 CTGG-1 CTCA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7295117|gb|AE003556.1|AE003556 Drosophila melanogaster genomic scaffold 142000013386050 section 43 of 54, complete sequence
Position Repeat Coverage Repeat
1307 CTCC * 5 18/20 CTCC CTCA CTCC CTCC CTCT
6306 TTGT * 7 26/28 TTGT TTGT TTGT TTGT TTTT TTTT TTGT
6339 TTTG * 5 18/20 TTTG TTTG TTTT TCTG TTTG
9276 GATC * 5 18/20 GATC GATC GATC GATC GAAT
10459 CAAC * 5 18/20 CAAC CAGC CAAC CAGC CAAC
88309 AACA * 5 18/20 AACA AACA AACA AACA AGTA
117963 CTGG * 6 22/24 CTGG CTGG CTGG CTGG CTGG CTTT
122221 TACA * 5 18/20 TACA TACA TACA TACA TAGG
127293 TACA * 5 18/20 TACA TACA TACA TATA TACG
204841 TGGC * 5 18/20 TGGC AGGC AGGC TGGC TGGC
252431 GTCC * 5 18/20 GTCC GTCC GTCC GTTT GTCC
262782 ATTA * 5 20/20 ATTA ATTA ATTA ATTA ATTA
275583 ACAT * 5 18/20 ACAT ACAT ACAT ACAT ATGT
-----------------------------------------------------------------------------
Total sequence length......................... 281146
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 13
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AACA-1 ATTA-1 ACAT-1 TACA-2 TTTG-1 TTGT-1 TGGC-1 GATC-1
GTCC-1 CAAC-1 CTGG-1 CTCC-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7295064|gb|AE003555.1|AE003555 Drosophila melanogaster genomic scaffold 142000013386050 section 42 of 54, complete sequence
Position Repeat Coverage Repeat
6720 GTGG * 5 18/20 GTGG TTGG GTGG CTGG GTGG
23485 GGTT * 5 19/20 GGTT GGTA GGTT GGTT GGTT
39038 AGCT * 6 22/24 AGCT AGAT AGCT AGCT AGCT GGCT
64215 ACAA * 5 18/20 ACAA ATAA ACAA ACGA ACAA
70818 ACAA * 5 18/20 ACAA GCAA ACAA ACGA ACAA
87599 TGTA * 5 18/20 TGTA CGTA TGTA TGTC TGTA
101225 AAAT * 6 22/24 AAAT CAAT AAAT AAAT CAAT AAAT
154023 ACGG * 6 22/24 ACGG ACGG ACGG ATGA ACGG ACGG
156207 CTCA * 6 23/24 CTCA CTCA CTCA CTCA CTCA CTCT
158236 ATGT * 5 18/20 ATGT ATGT ATAT ATGT ATAT
169945 TGTT * 5 18/20 TGTT TGCT TGCT TGTT TGTT
176210 AAAC * 6 22/24 AAAC CAAC AAAC AAAC AAAC CAAC
176714 CAAT * 5 19/20 CAAT CAAT CAAT CAAT CAAA
183505 TTAT * 5 18/20 TTAT TTAT TTAT TTTT TTTT
192956 CATT * 5 20/20 CATT CATT CATT CATT CATT
196472 GACT * 5 18/20 GACT GACT GACT GGCT GGCT
224806 AATA * 5 18/20 AATA AATA AATA AATA ATTT
235084 ACAT * 5 18/20 ACAT ATAT ACAT ACAT ATAT
242492 TGTT * 5 19/20 TGTT TGTT TGTT TGTT GGTT
242516 GGTT * 10 36/40 GGTT GGTT GGTT GGTT GGTT GCTT AGTT GGTT TGTT TGTT
251078 AGCC * 5 18/20 AGCC AACC AACC AGCC AGCC
252526 ACTG * 5 18/20 ACTG ACCA ACTG ACTG ACTG
-----------------------------------------------------------------------------
Total sequence length......................... 281936
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 22
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 AAAC-1 AATA-1 ATGT-1 AGCT-1 AGCC-1 ACAA-2 ACAT-1
ACTG-1 ACGG-1 TTAT-1 TGTA-1 TGTT-2 GACT-1 GTGG-1 GGTT-2
CAAT-1 CATT-1 CTCA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7295028|gb|AE003554.1|AE003554 Drosophila melanogaster genomic scaffold 142000013386050 section 41 of 54, complete sequence
Position Repeat Coverage Repeat
2690 CTTA * 5 19/20 CTTA CTTA CTTT CTTA CTTA
21883 CAGC * 5 18/20 CAGC CATC CAGC CAGC CAGG
37011 ACTG * 5 18/20 ACTG ACTG CATG ACTG ACTG
37967 AGGC * 5 18/20 AGGC AGGC AGGC AGGA AGGG
42854 CGTT * 6 22/24 CGTT CGTT CGTT CGTT CGTT GGTC
44524 AATA * 5 19/20 AATA AATA CATA AATA AATA
44865 GGCT * 5 20/20 GGCT GGCT GGCT GGCT GGCT
81986 GTAA * 5 18/20 GTAA GTAA GGAA GCAA GTAA
117680 CCGA * 5 20/20 CCGA CCGA CCGA CCGA CCGA
121306 ATTC * 5 19/20 ATTC ATTC ATTC GTTC ATTC
128778 TGAC * 5 19/20 TGAC TGAA TGAC TGAC TGAC
138276 GATA * 6 22/24 GATA GATA GATA GATA TATA GACA
184071 ATCC * 6 22/24 ATCC ATCC ATCC ATCC ATCG ATCG
190727 CTCA * 5 18/20 CTCA CTCA CTCA CTCA CACT
197877 AAAC * 5 18/20 AAAC AAAC AAAC AAAT AAAA
201871 TATG * 5 18/20 TATG TACG TATG TACG TATG
202209 ATAC * 7 26/28 ATAC ATAC ATAC ATAC ATAC ATAT ATAT
204082 TGAC * 5 18/20 TGAC TGAA TGAC TGAA TGAC
212361 TTGT * 6 22/24 TTGT TTGT TTGT TTGC TTAT TTGT
226781 GTCG * 5 18/20 GTCG GTCG GTCG GTCG ATCA
227125 GTGG * 6 22/24 GTGG GTGG TTGG GTGG TTGG GTGG
272115 TGTC * 5 18/20 TGTC TATC TGCC TGTC TGTC
-----------------------------------------------------------------------------
Total sequence length......................... 285729
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 22
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAC-1 AATA-1 ATAC-1 ATTC-1 ATCC-1 AGGC-1 ACTG-1 TATG-1
TTGT-1 TGAC-2 TGTC-1 GATA-1 GTAA-1 GTGG-1 GTCG-1 GGCT-1
CAGC-1 CTTA-1 CTCA-1 CGTT-1 CCGA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7294982|gb|AE003553.1|AE003553 Drosophila melanogaster genomic scaffold 142000013386050 section 40 of 54, complete sequence
Position Repeat Coverage Repeat
15127 CTGC * 5 18/20 CTGC CTGG CTGC CTGA CTGC
15297 GGCA * 5 19/20 GGCA GGCA GACA GGCA GGCA
18743 ATAC * 5 19/20 ATAC ATAC ATAC ATAC AAAC
26322 CAAA * 5 18/20 CAAA CAAA CAAA AAAA AAAA
57883 CAAA * 5 18/20 CAAA CAAA AACA CAAA CAAA
60020 ATGT * 5 18/20 ATGT ATGT ACAT ATGT ATGT
67902 CATT * 5 18/20 CATT CATT CATT CATT CAGC
70143 CATA * 5 18/20 CATA CGTA CATA CGTA CATA
73206 ACTG * 15 54/60 ACTG ACTG ACTG AGTG ACTG ACTG ACTG ACTG ACTG AATG AATG CCTG ACTA ACTG ACAG
73270 GTGG * 5 18/20 GTGG GTGG ATGG GTGG TTGG
74262 ACAT * 5 18/20 ACAT ACAT ACAT ACAA ATAT
81338 ACCA * 6 22/24 ACCA ACCA ACCA ACCA ACCA ACAC
85277 ATTA * 5 18/20 ATTA ATTA ATTA ATTA AAGA
86853 TTAT * 5 18/20 TTAT TTAT TTGT TTAT TTTT
88079 ATAC * 7 26/28 ATAC ATAC ATAC ATAC ATAC ATAT ATAG
105358 TTTG * 5 18/20 TTTG TTTG TGTT TTTG TTTG
110611 TATT * 5 18/20 TATT TTTT TTTT TATT TATT
120221 TGTA * 5 18/20 TGTA TGTA TGAA TGTA TCTA
148366 TATG * 5 18/20 TATG TATG CATG TATG TATA
149050 ACTT * 5 18/20 ACTT ACTT ACTT ACTT AACT
151338 TGGA * 6 22/24 TGGA TCGA TGGA TGGA TGGA TCGA
151877 TACA * 5 18/20 TACA TATG TACA TACA TACA
181514 ATGT * 5 18/20 ATGT ATGT ATGT ATGT AAAT
239448 CTAC * 5 18/20 CTAC CTAC CTAC CTAT ATAC
242126 ACAT * 5 18/20 ACAT ACAT ACAT ACAT ATGT
243075 CCAT * 5 18/20 CCAT CCAA CCAT CCAT CCAG
243099 CCAC * 5 18/20 CCAC CCAC GCAA CCAC CCAC
252315 TAAA * 5 18/20 TAAA TAAA CAAA TAAA TGAA
264018 TTCA * 5 18/20 TTCA TTCA TTAA TTCA TTGA
264268 TATG * 5 18/20 TATG TACG TATG TATG CATG
-----------------------------------------------------------------------------
Total sequence length......................... 287145
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 30
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
ATAC-2 ATTA-1 ATGT-2 ACAT-2 ACTT-1 ACTG-1 ACCA-1 TAAA-1
TATT-1 TATG-2 TACA-1 TTAT-1 TTTG-1 TTCA-1 TGTA-1 TGGA-1
GTGG-1 GGCA-1 CAAA-2 CATA-1 CATT-1 CTAC-1 CTGC-1 CCAT-1
CCAC-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7294927|gb|AE003552.1|AE003552 Drosophila melanogaster genomic scaffold 142000013386050 section 39 of 54, complete sequence
Position Repeat Coverage Repeat
11405 ACAT * 5 18/20 ACAT ACGC ACAT ACAT ACAT
20327 TATG * 5 18/20 TATG TATG TATG TATA TTTG
50459 ACAA * 5 18/20 ACAA ACAA ACAA AGCA ACAA
58856 TTTG * 7 27/28 TTTG TTTC TTTG TTTG TTTG TTTG TTTG
61640 TTAA * 5 19/20 TTAA TTAT TTAA TTAA TTAA
69424 CCAT * 12 46/48 CCAT CGAT TCAT CCAT CCAT CCAT CCAT CCAT CCAT CCAT CCAT CCAT
95555 GTAT * 5 19/20 GTAT GTAT GTAT GTAT GTAG
95705 GCCA * 6 22/24 GCCA GCCA GCCA GCCA GCCA GCTG
102358 TAAT * 5 20/20 TAAT TAAT TAAT TAAT TAAT
107391 GGTT * 6 22/24 GGTT GGTT GGTT GGTT GGTT CATT
153561 CCAA * 5 18/20 CCAA CCAA CCAA CCAT CCAT
153581 CCAT * 5 19/20 CCAT CCAT CCAT CTAT CCAT
167117 TTTG * 5 18/20 TTTG TCTG TTTG TTTG TTTT
173709 TGTA * 6 23/24 TGTA TGTA TGCA TGTA TGTA TGTA
186340 GTTG * 6 22/24 GTTG GTTG GTTG GTTG GTTG GCAG
218526 CCAG * 5 18/20 CCAG CCAG CCAG CCAG CCGA
224474 CAGT * 18 65/72 CAGT CAGC CAAT CAGT CAGT CAGT CAGT CAGT CAGT TAGT CAGT CAGT CAGT TAGT CATT CAGT CACT GAGT
233101 AATA * 5 19/20 AATA ATTA AATA AATA AATA
250085 CTGA * 5 18/20 CTGA CTGA CTGA CTGA CACA
-----------------------------------------------------------------------------
Total sequence length......................... 286784
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AATA-1 ACAA-1 ACAT-1 TAAT-1 TATG-1 TTAA-1 TTTG-2 TGTA-1
GTAT-1 GTTG-1 GGTT-1 GCCA-1 CAGT-1 CTGA-1 CCAA-1 CCAT-2
CCAG-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7294877|gb|AE003551.1|AE003551 Drosophila melanogaster genomic scaffold 142000013386050 section 38 of 54, complete sequence
Position Repeat Coverage Repeat
62617 TTTA * 6 22/24 TTTA TTTA TTTA TTTA TTAA CTTA
84842 ATAC * 6 22/24 ATAC GTAC ATAC ATAC ATAC ATAT
195216 TGGT * 6 22/24 TGGT TGGG TGGG TGGT TGGT TGGT
211618 TTTA * 5 18/20 TTTA TTTA TTTT TTTA TTTT
222184 TTTG * 5 18/20 TTTG TTTG TGTT TTTG TTTG
227437 TATT * 5 18/20 TATT TTTT TTTT TATT TATT
261328 TATG * 5 18/20 TATG TATC TATG TATG TATA
-----------------------------------------------------------------------------
Total sequence length......................... 285978
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 7
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
ATAC-1 TATT-1 TATG-1 TTTA-2 TTTG-1 TGGT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7294844|gb|AE003550.1|AE003550 Drosophila melanogaster genomic scaffold 142000013386050 section 37 of 54, complete sequence
Position Repeat Coverage Repeat
4265 CTGA * 5 18/20 CTGA TTGA CTGG CTGA CTGA
37757 CTGG * 7 27/28 CTGG CTGG CTGG CTGG CTGG CTGC CTGG
49813 ACAG * 5 18/20 ACAG CCAG CCAG ACAG ACAG
61987 ACAA * 5 18/20 ACAA ACAA ACAA AAAA AAAA
66419 GTTG * 5 18/20 GTTG GTGG GTTG GTTG GGTG
70045 AGTC * 5 18/20 AGTC AGTG AGTC AGTC ACTC
73542 ACAG * 6 22/24 ACAG AGAG ACAG ACAA ACAG ACAG
86259 TATG * 5 18/20 TATG TATG TATG TATG TGGG
98144 TATG * 5 18/20 TATG TATG TATG TATA TATA
100452 AACA * 6 22/24 AACA AACA AACA AACA ATCG AACA
100476 AACC * 8 29/32 AACC AACC AATC AACC AACC AACC AACA AACA
110349 CTGA * 5 18/20 CTGA CTGA CTAA CTGA CTGG
154863 CGTA * 5 18/20 CGTA CGTA TGTA CGTA TGTA
154971 ACCA * 6 22/24 ACCA ACTA TCCA ACCA ACCA ACCA
157637 TAAA * 5 18/20 TAAA TAAA TAAA TAAA TAGT
187474 AATG * 8 29/32 AATG AGTG AATG AATG AATG AATG AATG GGTG
194694 ATCG * 6 22/24 ATCG ATCG ATCA ATCG ATCG GTCG
238819 ATAG * 5 18/20 ATAG ATAG ATAG ATAG ACAT
262509 GTAT * 5 19/20 GTAT GTAT GTAT GTAT GTGT
266185 TGTA * 5 18/20 TGTA TATA TGTA CGTA TGTA
-----------------------------------------------------------------------------
Total sequence length......................... 298675
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AATG-1 AACA-1 AACC-1 ATAG-1 ATCG-1 AGTC-1 ACAA-1 ACAG-2
ACCA-1 TAAA-1 TATG-2 TGTA-1 GTAT-1 GTTG-1 CTGA-2 CTGG-1
CGTA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7294827|gb|AE003549.1|AE003549 Drosophila melanogaster genomic scaffold 142000013386050 section 36 of 54, complete sequence
Position Repeat Coverage Repeat
5010 TTTG * 5 18/20 TTTG TTTG TTTT ATTG TTTG
26875 CCCG * 5 18/20 CCCG CCCG CCCG CCAG CCAG
35680 CTGG * 8 30/32 CTGG CTGG CTGG CTGG CTGG CTGG CTGG TCGG
38563 AATA * 5 18/20 AATA AATA AATA AATG CATA
47858 GCTG * 5 18/20 GCTG ACTG GCTG GCTG CCTG
52039 TGTC * 6 22/24 TGTC TGTC TCTC TGTC TGTC TGTT
75895 AATA * 6 22/24 AATA AATA AATA AAAA TATA AATA
112889 CAGC * 5 18/20 CAGC CAGC CATC CAAC CAGC
121508 AGAT * 5 18/20 AGAT AGAT AGAA AGAT AGCT
169326 TTAT * 8 29/32 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TATA
172480 ATTT * 5 18/20 ATTT ATTT ATTT ATTT AACT
224260 TCAT * 5 18/20 TCAT TTAT TCAT TCAT TAAT
249376 GCTG * 6 22/24 GCTG GCTG GCTG GCTG GTTG CCTG
277211 TTTA * 5 18/20 TTTA TTTA TTTT TTTT TTTA
280731 ACAT * 5 19/20 ACAT ATAT ACAT ACAT ACAT
-----------------------------------------------------------------------------
Total sequence length......................... 300477
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 15
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AATA-2 ATTT-1 AGAT-1 ACAT-1 TTAT-1 TTTA-1 TTTG-1 TGTC-1
TCAT-1 GCTG-2 CAGC-1 CTGG-1 CCCG-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7294819|gb|AE003548.1|AE003548 Drosophila melanogaster genomic scaffold 142000013386050 section 35 of 54, complete sequence
Position Repeat Coverage Repeat
9821 GCCA * 5 18/20 GCCA GCCA GCCA TTCA GCCA
11686 ATAG * 5 18/20 ATAG ATAG ATAG ATAG GGAG
12426 TATG * 5 18/20 TATG TATA TATG TATG TGTG
27361 CAGA * 6 22/24 CAGA CAAA CAGA CAGA CAGA AAGA
27833 ACTG * 13 48/52 ACTG ACTG ACTG ACTG AATG GCTG ACTG ACTG ACTG ACTG ACTG ACTG GCTC
65148 GTGG * 5 18/20 GTGG GTGC GTGG GTGG TTGG
70412 TAAA * 5 18/20 TAAA TAAA TTAT TAAA TAAA
97710 TAAA * 5 18/20 TAAA TAAA TATA TGAA TAAA
104060 TTTG * 5 19/20 TTTG TTTG TTTG TTTG TTTC
116580 TAAC * 6 22/24 TAAC CACC TAAC TAAC TAAC TAAC
122638 AATA * 5 18/20 AATA ATTA AATA AATC AATA
131224 AGTC * 6 23/24 AGTC AGTC AGTC AGTC AGTC AGTG
149271 TCAC * 5 18/20 TCAC TCAC TCAT TCAC TCGC
188191 ACCA * 5 18/20 ACCA ACCA ACCA ACCA GGCA
188229 CGAC * 5 18/20 CGAC CGAC CGAC CAAC CGAG
189451 CGGT * 5 18/20 CGGT CGAT CGGT TGGT CGGT
206954 CTGA * 5 18/20 CTGA CTGA CTGA CTGG CTGT
219933 CAGC * 12 44/48 CAGC CAGT CAGC CAGT CAGC CAGC CAGC CAAC CAGC CAGT CAGC CAGC
228370 TACA * 8 29/32 TACA TACA TACA TACA TACA TACG TACA TATG
-----------------------------------------------------------------------------
Total sequence length......................... 244249
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AATA-1 ATAG-1 AGTC-1 ACTG-1 ACCA-1 TAAA-2 TAAC-1 TATG-1
TACA-1 TTTG-1 TCAC-1 GTGG-1 GCCA-1 CAGA-1 CAGC-1 CTGA-1
CGAC-1 CGGT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7294792|gb|AE003547.1|AE003547 Drosophila melanogaster genomic scaffold 142000013386050 section 34 of 54, complete sequence
Position Repeat Coverage Repeat
1952 AATT * 5 19/20 AATT AATT AATT TATT AATT
29403 GTTT * 6 22/24 GTTT GCTT GTTT GTTT GTTT GCTT
31658 GTGG * 5 18/20 GTGG GTGG TTGG GTGG CTGG
35709 ACTC * 5 18/20 ACTC ACTC ACTC GCTC GCTC
55185 ACCC * 5 18/20 ACCC ACCC ACCC ATCC ACAC
57331 TATT * 5 19/20 TATT TATT TAAT TATT TATT
70020 GGTT * 5 18/20 GGTT GGGT GGTT GGGT GGTT
71356 AGTG * 6 22/24 AGTG AGTA AGTG AGTG AGTG GGTG
95382 TTTC * 5 18/20 TTTC TTTC TTTC TTTT TTTT
105391 TTCC * 5 18/20 TTCC TTCC TTCC TTTG TTCC
107719 CAGT * 5 18/20 CAGT CAAG CAGT CAGT CAGT
116149 ATCC * 6 23/24 ATCC ATCC ATCC ATCC ATCC GTCC
132510 TTAT * 5 19/20 TTAT TTTT TTAT TTAT TTAT
134575 AAAT * 6 22/24 AAAT AAAT AAAT AAAT AAAT CAAA
136874 CTCA * 6 22/24 CTCA CACA CTCA CTCA CTCA CTCC
141658 CAAA * 6 22/24 CAAA CAAA CAAA CAAA CAAA CGAC
151098 GAGC * 5 19/20 GAGC GAGC GAGC GAGA GAGC
162258 AAGA * 5 18/20 AAGA AAGA AAAA AAAA AAGA
168031 TACA * 5 18/20 TACA TGCA TACA TACA CACA
173978 TGTA * 10 36/40 TGTA TGTA TGTA TCTA TGTA TGTA TGTA TCTA TGTA TCTG
191522 AATT * 6 22/24 AATT AATT AATT AATT AATT CAAT
206615 CATA * 5 19/20 CATA CGTA CATA CATA CATA
219725 TGTA * 5 18/20 TGTA CGTA TGTA TGTA TATA
232274 CAGA * 6 22/24 CAGA CAGA CAGA CAGA CAGC CAGC
236643 TTCA * 5 19/20 TTCA TTCA TTGA TTCA TTCA
242115 ACTG * 6 22/24 ACTG ACTG AATG GCTG ACTG ACTG
280335 CATT * 6 22/24 CATT TAGT CATT CATT CATT CATT
-----------------------------------------------------------------------------
Total sequence length......................... 281396
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 27
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 AATT-2 AAGA-1 ATCC-1 AGTG-1 ACTG-1 ACTC-1 ACCC-1
TATT-1 TACA-1 TTAT-1 TTTC-1 TTCA-1 TTCC-1 TGTA-2 GAGC-1
GTTT-1 GTGG-1 GGTT-1 CAAA-1 CATA-1 CATT-1 CAGA-1 CAGT-1
CTCA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7294749|gb|AE003546.1|AE003546 Drosophila melanogaster genomic scaffold 142000013386050 section 33 of 54, complete sequence
Position Repeat Coverage Repeat
8262 TTTA * 5 18/20 TTTA TTTA TTTT TTTA TTTT
24978 TAAA * 5 18/20 TAAA TAAA TAAA TATA TATA
49816 ATGT * 5 19/20 ATGT ATGC ATGT ATGT ATGT
55247 AACA * 5 20/20 AACA AACA AACA AACA AACA
79891 TATG * 5 19/20 TATG TATG TATG TAGG TATG
154764 CATT * 7 26/28 CATT CACT CATT CATT CACT CATT CATT
158785 CATA * 6 23/24 CATA CATA CATA CATA CATA CATC
192554 CTGA * 6 23/24 CTGA CTGA CTGA CTGA CTGA ATGA
213411 TTAT * 5 18/20 TTAT TTAA ATAT TTAT TTAT
227791 CTGG * 10 37/40 CTGG CTGG CTGG ATGG CTGG CTAG CTGG CTAG CTGG CTGG
249506 CATA * 5 18/20 CATA TATA CATA CATA TATA
262105 CTGT * 6 22/24 CTGT CCGT CTGT CCGT CTGT CTGT
280136 TAAT * 5 18/20 TAAT TAAT TTAA TAAT TAAT
-----------------------------------------------------------------------------
Total sequence length......................... 281602
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 13
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AACA-1 ATGT-1 TAAA-1 TAAT-1 TATG-1 TTAT-1 TTTA-1 CATA-2
CATT-1 CTGA-1 CTGT-1 CTGG-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7294729|gb|AE003545.1|AE003545 Drosophila melanogaster genomic scaffold 142000013386050 section 32 of 54, complete sequence
Position Repeat Coverage Repeat
1684 GCAT * 5 18/20 GCAT GCAT GCAT GCAG GGAT
19541 TTTG * 5 18/20 TTTG TTTG CTTT TTTG TTTG
29095 ACTG * 5 18/20 ACTG ACTC ACTG ACTG AATG
29119 AATG * 6 22/24 AATG AATG AATG AATG AGTG AAGG
33533 GACT * 5 18/20 GACT GACT GACG AACT GACT
42078 CTGA * 6 22/24 CTGA CTGC CTGA CTGA CTGA CAGA
46573 GATC * 5 18/20 GATC GATC GTTG GATC GATC
50810 CTTC * 5 18/20 CTTC CTTC CTTC CGGC CTTC
65867 GTCC * 5 18/20 GTCC GTTA GTCC GTCC GTCC
67584 ATGG * 8 29/32 ATGG ATGG ATGG TTGG ATGG ATGG ATGG TCGG
77724 AATA * 5 18/20 AATA AATA AATA ATAA AATA
92776 CCCA * 5 18/20 CCCA CCGA CCCA CCGA CCCA
115348 CCAT * 5 20/20 CCAT CCAT CCAT CCAT CCAT
124296 AGCT * 5 18/20 AGCT AGCT GGCT GGCT AGCT
127221 CATA * 5 18/20 CATA TGTA CATA CATA CATA
139652 ATAA * 5 18/20 ATAA ATAA ATAA ATAT ATAC
145727 GCCA * 5 18/20 GCCA GTCA GCCA GTCA GCCA
151374 GATA * 5 18/20 GATA GATA GATA GATA GAAG
159433 ACAT * 6 22/24 ACAT ACAT ACAT ACAT ACAC ACGT
163535 CAAA * 5 20/20 CAAA CAAA CAAA CAAA CAAA
165779 GTAT * 5 18/20 GTAT GTAT GTGT GTAT GTAC
165801 ATGT * 5 18/20 ATGT ATGT ACGT ACGT ATGT
169829 ATAC * 6 23/24 ATAC ATAC ATAC ATAC ATAC ATAT
171070 GGCT * 6 22/24 GGCT GGCT GGCT GGCT GGTT GGTT
176483 TATC * 5 18/20 TATC TATA TATC TATG TATC
188804 TTTA * 5 18/20 TTTA TTTA TTTA TTTT TTTT
198906 GTTG * 8 29/32 GTTG GTTG GTTG GTTG GTTG GTTG GTTG TTGT
204045 CGTA * 5 19/20 CGTA CGTA CGTA CGTA CATA
204947 TAGG * 5 18/20 TAGG TAGG TAGG TAAG TAAG
205324 TTAT * 5 19/20 TTAT TTAT TTAT TTAT TTTT
205391 AGAT * 5 18/20 AGAT AGAG AGAT AGAT AGAG
206879 TATG * 5 18/20 TATG TATG TATG TACA TATG
208654 TCTA * 5 19/20 TCTA TCTA TCTA TCTA GCTA
211302 TATG * 5 18/20 TATG TATT TATG TATG TAGG
214715 GGTC * 6 24/24 GGTC GGTC GGTC GGTC GGTC GGTC
215445 TGAC * 6 22/24 TGAC TGAC TGAC TGGC TGGC TGAC
255906 TATT * 5 19/20 TATT TATT TATT TATT TTTT
-----------------------------------------------------------------------------
Total sequence length......................... 281893
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 37
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AATA-1 AATG-1 ATAA-1 ATAC-1 ATGT-1 ATGG-1 AGAT-1 AGCT-1
ACAT-1 ACTG-1 TATT-1 TATG-2 TATC-1 TAGG-1 TTAT-1 TTTA-1
TTTG-1 TGAC-1 TCTA-1 GATA-1 GATC-1 GACT-1 GTAT-1 GTTG-1
GTCC-1 GGTC-1 GGCT-1 GCAT-1 GCCA-1 CAAA-1 CATA-1 CTTC-1
CTGA-1 CGTA-1 CCAT-1 CCCA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7294680|gb|AE003544.1|AE003544 Drosophila melanogaster genomic scaffold 142000013386050 section 31 of 54, complete sequence
Position Repeat Coverage Repeat
774 TGGA * 6 22/24 TGGA TGGA TGGT TGGA TGGT TGGA
69523 GTCT * 6 22/24 GTCT GTCT GACT GTCT GTCC GTCT
70946 GACT * 6 22/24 GACT GACT GACT GAAT GACT GGCT
100515 TTAT * 5 18/20 TTAT TTAT TTAT TTAT TTTA
131803 ACTC * 5 18/20 ACTC ACTC ACTC ACAC ACAC
158479 TAAA * 5 18/20 TAAA TAAA TAAA TAAA TTCA
171690 GCGT * 6 23/24 GCGT GCGT GCGT GTGT GCGT GCGT
180971 AAAG * 5 18/20 AAAG AAAG AAAG AAAA GAAG
187583 TAGA * 5 18/20 TAGA TAGA TAAA TAGG TAGA
199312 TAAA * 5 19/20 TAAA AAAA TAAA TAAA TAAA
200676 TATG * 5 18/20 TATG TACA TATG TATG TATG
237068 GTTG * 6 22/24 GTTG GTTG GTTG GTTG TTTG TTTG
237896 TACA * 5 18/20 TACA CACA TCCA TACA TACA
241763 TATG * 5 18/20 TATG TATG TATG TATC TCTG
242490 TATG * 10 36/40 TATG TATG TATG TATG TATG TATT TATT TATG TATG ATTG
256681 TGAA * 6 23/24 TGAA TGAA TGAA TGAA TGAA TAAA
264267 ACTG * 11 40/44 ACTG ACTG ACTG ACTG ACTG ACTG ACTG ACGG ACTG ACTG ATGT
277115 CAGG * 5 18/20 CAGG CAGG CAGG CAGG CAAC
-----------------------------------------------------------------------------
Total sequence length......................... 281869
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAG-1 ACTG-1 ACTC-1 TAAA-2 TATG-3 TAGA-1 TACA-1 TTAT-1
TGAA-1 TGGA-1 GACT-1 GTTG-1 GTCT-1 GCGT-1 CAGG-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7294631|gb|AE003543.1|AE003543 Drosophila melanogaster genomic scaffold 142000013386050 section 30 of 54, complete sequence
Position Repeat Coverage Repeat
17735 ATGT * 5 18/20 ATGT ATGT ATGT ATGT ATAA
36521 CCGA * 5 18/20 CCGA CCGA TTGA CCGA CCGA
87535 TACA * 5 18/20 TACA TACA TACA TATG TACA
109730 TGCG * 5 18/20 TGCG TGTG TGTG TGCG TGCG
173289 ATGT * 5 18/20 ATGT ACAT ATGT ATGT ATGT
256244 CCGG * 5 18/20 CCGG ACGG CCGG ACGG CCGG
264505 ATAC * 5 18/20 ATAC ATAC ATAT ATGC ATAC
277591 GAGG * 5 19/20 GAGG GAGG GAAG GAGG GAGG
283515 ACAA * 5 18/20 ACAA ACAA GCAA ACGA ACAA
-----------------------------------------------------------------------------
Total sequence length......................... 284386
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 9
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
ATAC-1 ATGT-2 ACAA-1 TACA-1 TGCG-1 GAGG-1 CCGA-1 CCGG-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7294592|gb|AE003542.1|AE003542 Drosophila melanogaster genomic scaffold 142000013386050 section 29 of 54, complete sequence
Position Repeat Coverage Repeat
8438 CCAA * 5 18/20 CCAA CCAA CCAA CCAC CCAC
13201 GATG * 5 18/20 GATG GATG GATG CAGG GATG
43906 TTTA * 5 18/20 TTTA TTTA TTAA ATTA TTTA
47698 GTCC * 5 18/20 GTCC GTCC GTTT GTCC GTCC
50257 GATG * 6 22/24 GATG GATG GTTG GATG GATT GATG
65208 GGAA * 5 18/20 GGAA AGAT GGAA GGAA GGAA
69045 CTTC * 5 18/20 CTTC CTTC CTTC CTTT CGTC
76386 CTGG * 5 18/20 CTGG TTGG CTGG TTGG CTGG
77472 TATG * 5 18/20 TATG TATG TATG TGTG TAGG
80570 CTGT * 5 18/20 CTGT CTGT TTGT CTGT CCGT
87077 GTTC * 5 18/20 GTTC GTTC GTTC GTTT GTTT
87831 TCAC * 6 22/24 TCAC TCTC TCGC TCAC TCAC TCAC
100681 ACCA * 5 18/20 ACCA ACTA ACCA ACTA ACCA
100704 AACC * 5 18/20 AACC AAGC AACC AAAC AACC
186723 CCAC * 5 18/20 CCAC CCAC CCAA CCAC CAAC
189742 CAAA * 5 18/20 CAAA CAAA CATA CAAA AAAA
199358 AAAT * 5 18/20 AAAT AAGT AAAT AAAA AAAT
216721 TATC * 5 18/20 TATC TATC TATC TACG TATC
219986 GTAT * 5 18/20 GTAT GTGC GTAT GTAT GTAT
228166 ATAA * 5 18/20 ATAA AGAA ATAA TTAA ATAA
256388 GTTG * 5 18/20 GTTG GTTG GTTG TTTG GTTC
-----------------------------------------------------------------------------
Total sequence length......................... 289887
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 21
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 AACC-1 ATAA-1 ACCA-1 TATG-1 TATC-1 TTTA-1 TCAC-1
GATG-2 GTAT-1 GTTG-1 GTTC-1 GTCC-1 GGAA-1 CAAA-1 CTTC-1
CTGT-1 CTGG-1 CCAA-1 CCAC-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7294556|gb|AE003541.1|AE003541 Drosophila melanogaster genomic scaffold 142000013386050 section 28 of 54, complete sequence
Position Repeat Coverage Repeat
338 AAAT * 5 18/20 AAAT CAAT AATT AAAT AAAT
9869 CTCG * 5 19/20 CTCG CTCG CTCG CTCG CTCA
14759 ACGG * 5 18/20 ACGG ACGG ATGG ACGG ATGG
20691 AAAT * 5 18/20 AAAT AAAA AAAT AAAA AAAT
22632 ACTG * 7 26/28 ACTG ACGG ACTA ACTG ACTG ACTG ACTG
26153 TATG * 5 18/20 TATG TATG TACG TATG TATC
34467 CCAG * 8 29/32 CCAG CCAG CCAG CCAG CCAG TCAG CCAG CAAA
37533 ATCT * 6 23/24 ATCT ATCT ATCT ATCT ATCT ATTT
82304 TATG * 6 22/24 TATG TATG TATG TATG TTTG TTTG
86446 GCGA * 5 18/20 GCGA GCGA GCGC GAGA GCGA
127938 GTTG * 5 18/20 GTTG GCTG GTTG GATG GTTG
129278 TGGA * 5 19/20 TGGA TGGA TGGA TGGA TGGC
146953 GCTG * 5 18/20 GCTG GCTG GCTG GATG GATG
154746 ATCC * 6 22/24 ATCC ACCG ATCC ATCC ATCC ATCC
225917 ATAC * 6 22/24 ATAC ACAC ATAC TTAC ATAC ATAC
231754 CAAC * 6 22/24 CAAC CAAA CAGC CAAC CAAC CAAC
264149 CTCA * 8 29/32 CTCA CTCA CTCA CTCA CTCA CACA CACA CACA
-----------------------------------------------------------------------------
Total sequence length......................... 265547
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 17
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-2 ATAC-1 ATCT-1 ATCC-1 ACTG-1 ACGG-1 TATG-2 TGGA-1
GTTG-1 GCTG-1 GCGA-1 CAAC-1 CTCA-1 CTCG-1 CCAG-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7294528|gb|AE003540.1|AE003540 Drosophila melanogaster genomic scaffold 142000013386050 section 27 of 54, complete sequence
Position Repeat Coverage Repeat
4915 CATA * 5 18/20 CATA CATA CATA TATA AATA
8002 TTTA * 5 18/20 TTTA TTTA TTTG TGTA TTTA
70480 ATAC * 5 18/20 ATAC ATAC AAAC AAAC ATAC
156591 GTAT * 5 18/20 GTAT GTTG GTAT GTAT GTAT
157848 TTTG * 6 22/24 TTTG TTTG TTTG TTTG TTTG CTTT
164351 GTAT * 8 29/32 GTAT GCAT GTAT GTAT GTAT GTAT GTAT ATGT
168581 TATG * 5 18/20 TATG TATG TACA TATG TATG
184061 GTGG * 5 18/20 GTGG GTGG GTGG GTGT GTGT
210421 TAAT * 5 18/20 TAAT TTAT TAAT TAAT AAAT
214511 TATG * 5 18/20 TATG TATG TATG TATA TATA
232483 ACTC * 5 18/20 ACTC ACTC ACTC GCTC ATTC
232517 TCAT * 6 22/24 TCAT TCAG TCAT TCAT TCAT TTAT
242886 ATGG * 5 18/20 ATGG TTGG ATGG ATGG TTGG
255108 CAGC * 8 29/32 CAGC TAGT CAGC CAGC CAGC CAGC CAGC CATC
261872 ATAC * 5 18/20 ATAC ATAC ACAC ATAT ATAC
274442 AACC * 5 18/20 AACC AGCC AACC AGCC AACC
276687 TATG * 6 22/24 TATG TATG TATG TATG TATG TACT
282234 GTCA * 11 42/44 GTCA GTCA GTCA GTCA GTCA GTCA GTCA GGCA TTCA GTCA GTCA
283031 ACTC * 5 18/20 ACTC ACTC ACTC ATTC ATTC
286166 TTTG * 5 19/20 TTTG TGTG TTTG TTTG TTTG
-----------------------------------------------------------------------------
Total sequence length......................... 297385
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AACC-1 ATAC-2 ATGG-1 ACTC-2 TAAT-1 TATG-3 TTTA-1 TTTG-2
TCAT-1 GTAT-2 GTGG-1 GTCA-1 CATA-1 CAGC-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7294496|gb|AE003539.1|AE003539 Drosophila melanogaster genomic scaffold 142000013386050 section 26 of 54, complete sequence
Position Repeat Coverage Repeat
20188 CGAA * 5 18/20 CGAA CTAA CGAA CTAA CGAA
65401 GATG * 7 26/28 GATG GATA GATG GATG GATG GATG GACG
75034 CCAT * 5 18/20 CCAT CCAT CCAT CTAT CCCT
80680 TGGA * 5 18/20 TGGA TGGT TGGA TGGC TGGA
109675 AGCC * 6 22/24 AGCC AGCC AGCC AGCC AGCC AGTT
110377 TCAA * 8 30/32 TCAA TCAA TCCA TCAA TCAA TCAA TCAA TCAG
112016 GTAT * 5 18/20 GTAT GCAT GTAT GTAT GTAC
116644 GTTG * 8 29/32 GTTG GTTG GTTA GTTG GTTG GTTG GATG GATG
116677 ATGG * 5 18/20 ATGG ATGG TTGG ATGG CTGG
140444 AATA * 5 18/20 AATA AATA AATA AAAA AAAA
179299 GATT * 5 19/20 GATT GACT GATT GATT GATT
-----------------------------------------------------------------------------
Total sequence length......................... 271729
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 11
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AATA-1 ATGG-1 AGCC-1 TGGA-1 TCAA-1 GATT-1 GATG-1 GTAT-1
GTTG-1 CGAA-1 CCAT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7294470|gb|AE003538.1|AE003538 Drosophila melanogaster genomic scaffold 142000013386050 section 25 of 54, complete sequence
Position Repeat Coverage Repeat
12761 ATTT * 5 18/20 ATTT AATA ATTT ATTT ATTT
74614 AAAT * 5 18/20 AAAT AAAT AAAT AAAT GAAC
80339 TCAA * 6 22/24 TCAA TCAA TCAA TCAA CCAA CCAA
149716 TTTA * 5 18/20 TTTA TTTA TATA TTTA TATA
157191 ATCT * 77 279/308 ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATCA ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATAT ATAT ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATCT AACT ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATCC ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATAT ATCT ATCT ATCT ATCT ATCT ATCT ATAT ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATTT TTTG ACAA ATCA ACAG AGAC GTTG AATA GCCT
209067 TTAT * 6 23/24 TTAT TTAT TTAT TTAT TTAT TAAT
213236 TATT * 5 18/20 TATT TATT TATT TACT TTTT
213872 TTGT * 6 23/24 TTGT TTGT CTGT TTGT TTGT TTGT
226962 TATG * 5 19/20 TATG TATG TATG TATG TATA
252757 CATT * 5 18/20 CATT CAGT CACT CATT CATT
256909 ACAA * 5 18/20 ACAA ACAG GCAA ACAA ACAA
268082 AAAT * 6 22/24 AAAT AAAT AAAT AACA AAAT AAAT
278817 TTAA * 5 18/20 TTAA TTAA ATAA TTAA ATAA
288683 GTAT * 5 18/20 GTAT GCAT ATAT GTAT GTAT
-----------------------------------------------------------------------------
Total sequence length......................... 303715
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-2 ATTT-1 ATCT-1 ACAA-1 TATT-1 TATG-1 TTAA-1 TTAT-1
TTTA-1 TTGT-1 TCAA-1 GTAT-1 CATT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7294453|gb|AE003537.1|AE003537 Drosophila melanogaster genomic scaffold 142000013386050 section 24 of 54, complete sequence
Position Repeat Coverage Repeat
3613 CTGG * 5 18/20 CTGG CTAG ATGG CTGG CTGG
23602 ATAC * 8 29/32 ATAC ATAC ATAC ATAC ATAC ATAC ATAT GTAT
24343 CACC * 5 18/20 CACC CACC AACC CACC CATC
62408 TGAA * 5 18/20 TGAA TGAA TGAC TGAC TGAA
66135 AATA * 5 18/20 AATA AATA CATC AATA AATA
68365 GGGT * 5 18/20 GGGT GGTT GGGT GGAT GGGT
70983 CCAA * 5 18/20 CCAA CCAA CCAA CCGA CCGA
83231 ATTC * 5 18/20 ATTC ACTC ATTC ACTC ATTC
88773 GTTG * 5 19/20 GTTG GTTG GATG GTTG GTTG
94283 TTTG * 5 18/20 TTTG TTTG TTGC TTTG TTTG
101153 GATG * 8 29/32 GATG GATG GATG GATG GATA GATG GATG GCCG
101226 ATAG * 5 18/20 ATAG ATAG ATAT ATAG ATGG
107799 CATT * 5 18/20 CATT CATT GATT CATT TATT
147902 GCAG * 5 19/20 GCAG GCAG GCAG GCAG TCAG
165162 CCAG * 11 40/44 CCAG CCAG CCAG TCAG TCAG CCAG CCAG GCAG CCAG CCAG CCAT
170659 AGTG * 5 18/20 AGTG TGTG AGTG AGTG GGTG
177110 GACA * 5 18/20 GACA GGCA GACA GACA AACA
179372 GACC * 5 19/20 GACC AACC GACC GACC GACC
190959 TAAC * 5 18/20 TAAC TAAC TAAC TAAC TACA
229565 ATGA * 5 19/20 ATGA ATGA ATGA ATGA ATGG
236977 TCGA * 7 26/28 TCGA TCGA TCGA TCGA TCGC TCCA TCGA
238719 ATAG * 5 19/20 ATAG ATAG ATAG ATAG ATGG
240459 ACGA * 5 18/20 ACGA ACAA ATGA ACGA ACGA
240548 CTGG * 6 23/24 CTGG CTGA CTGG CTGG CTGG CTGG
242029 GACT * 6 22/24 GACT GACT GCCT GACT GGCT GACT
276045 ATAC * 5 19/20 ATAC TTAC ATAC ATAC ATAC
-----------------------------------------------------------------------------
Total sequence length......................... 280570
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 26
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AATA-1 ATAG-2 ATAC-2 ATTC-1 ATGA-1 AGTG-1 ACGA-1 TAAC-1
TTTG-1 TGAA-1 TCGA-1 GATG-1 GACA-1 GACT-1 GACC-1 GTTG-1
GGGT-1 GCAG-1 CATT-1 CACC-1 CTGG-2 CCAA-1 CCAG-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7294412|gb|AE003536.1|AE003536 Drosophila melanogaster genomic scaffold 142000013386050 section 23 of 54, complete sequence
Position Repeat Coverage Repeat
27350 GTTG * 5 18/20 GTTG GTTG GTTG GATG GATG
30356 AATT * 5 18/20 AATT TATT GATT AATT AATT
34117 ACTG * 6 24/24 ACTG ACTG ACTG ACTG ACTG ACTG
36583 ATTT * 5 18/20 ATTT ATTT ATTT TTTT TTTT
136577 ATGT * 5 18/20 ATGT ATGT ATGT AATT ATGT
143509 CCAT * 6 23/24 CCAT CCAT CCAT CCAT CCAT CCAC
153163 TCCA * 5 18/20 TCCA GCCA TCCA TTCA TCCA
172408 CAGT * 6 22/24 CAGT CAGT CATT TAGT CAGT CAGT
178049 GGAT * 5 20/20 GGAT GGAT GGAT GGAT GGAT
188200 GACA * 5 18/20 GACA GACA GACA GAGA GAGA
208489 CTGG * 5 18/20 CTGG ATGG CTGG ATGG CTGG
212747 ACAT * 5 18/20 ACAT ACAC ACAT ACAT ATAT
262979 GCCA * 5 18/20 GCCA GTCA TCCA GCCA GCCA
300896 GGAA * 5 18/20 GGAA AGCA GGAA GGAA GGAA
306193 GGTC * 7 26/28 GGTC GGTC GGTC GGTG GGTC GGTT GGTC
313259 GTTC * 7 27/28 GTTC GTTC GTTC GTTC GTTC TTTC GTTC
-----------------------------------------------------------------------------
Total sequence length......................... 341639
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AATT-1 ATTT-1 ATGT-1 ACAT-1 ACTG-1 TCCA-1 GACA-1 GTTG-1
GTTC-1 GGAA-1 GGAT-1 GGTC-1 GCCA-1 CAGT-1 CTGG-1 CCAT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7294397|gb|AE003535.1|AE003535 Drosophila melanogaster genomic scaffold 142000013386050 section 22 of 54, complete sequence
Position Repeat Coverage Repeat
10396 AACC * 5 18/20 AACC AACC AACC AACC CATC
33048 TTGT * 5 18/20 TTGT TTGT TTGT TTGT TGCT
56868 AATA * 5 18/20 AATA AATA AATT AATA AAAA
106573 TACA * 5 18/20 TACA TATA CACA TACA TACA
170926 TATT * 5 19/20 TATT TATT TATT TATT TATA
172226 ATCC * 5 18/20 ATCC ATCC ATCT ATCC ATTC
185829 CTGA * 6 22/24 CTGA ATGA CTGA CTGA CTGA TTGA
203843 ATTT * 5 18/20 ATTT ATTT ATTT TATT ATTT
208297 TTAC * 5 18/20 TTAC TTAC ATAC TTAC TTAA
235890 TCCA * 5 19/20 TCCA TCCA TCTA TCCA TCCA
-----------------------------------------------------------------------------
Total sequence length......................... 278748
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 10
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AATA-1 AACC-1 ATTT-1 ATCC-1 TATT-1 TACA-1 TTAC-1 TTGT-1
TCCA-1 CTGA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7294375|gb|AE003534.1|AE003534 Drosophila melanogaster genomic scaffold 142000013386050 section 21 of 54, complete sequence
Position Repeat Coverage Repeat
7031 CGGA * 5 18/20 CGGA CTGG CGGA CGGA CGGA
22270 AATT * 5 18/20 AATT AAAC AATT AATT AATT
33854 AAAT * 5 18/20 AAAT TAAT AAAT AAAT AAAA
39407 AAAC * 5 18/20 AAAC AAAC AAAC AAAA AAAT
172592 CATA * 5 18/20 CATA CATA CATA TGTA CATA
184211 ATTT * 5 18/20 ATTT ATTT ATTT ATTT GTTG
187103 ATTT * 5 19/20 ATTT ATTT ATTT ATTT ATCT
198543 GATC * 5 18/20 GATC GATC GAAC GATC GATG
246593 GTCC * 5 18/20 GTCC GTCT GACC GTCC GTCC
-----------------------------------------------------------------------------
Total sequence length......................... 280061
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 9
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 AAAC-1 AATT-1 ATTT-2 GATC-1 GTCC-1 CATA-1 CGGA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7294349|gb|AE003533.1|AE003533 Drosophila melanogaster genomic scaffold 142000013386050 section 20 of 54, complete sequence
Position Repeat Coverage Repeat
12129 ATAA * 5 18/20 ATAA ATTA ATCA ATAA ATAA
26710 GACC * 5 18/20 GACC GACC GACC GAAC GAGC
42070 ACAT * 5 19/20 ACAT ACAT ACAT ACAT ACAG
78327 GACT * 5 18/20 GACT GACT GCCT GACT GGCT
102463 TCAG * 6 22/24 TCAG TCAC TCAG TCAG TCAG TCAA
130103 ATTT * 5 18/20 ATTT ATGT ATTT AGTT ATTT
138962 TATG * 5 18/20 TATG TATA TATG TATG TATA
173215 AATC * 6 22/24 AATC AATC AACC AATC AATA AATC
186419 GCTG * 6 22/24 GCTG GCTG GCTG GCTG GCTG TATG
188278 CAAA * 5 18/20 CAAA CAAA CAAA CCAA GAAA
188432 GTTT * 7 26/28 GTTT GTTT GCCT GTTT GTTT GTTT GTTT
211605 ATGG * 8 29/32 ATGG ATGG ATGG ATGG ATGG GTGG ATGG GCGG
242279 AACA * 6 23/24 AACA AACA AACA AACA AACA AGCA
-----------------------------------------------------------------------------
Total sequence length......................... 275076
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 13
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AATC-1 AACA-1 ATAA-1 ATTT-1 ATGG-1 ACAT-1 TATG-1 TCAG-1
GACT-1 GACC-1 GTTT-1 GCTG-1 CAAA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7294302|gb|AE003532.1|AE003532 Drosophila melanogaster genomic scaffold 142000013386050 section 19 of 54, complete sequence
Position Repeat Coverage Repeat
4887 CCAT * 5 18/20 CCAT CCAT CCAT CCAA CCGT
13952 TCAG * 6 22/24 TCAG TCAG TCTG TCAG ACAG TCAG
14759 CCGA * 5 18/20 CCGA CCGA CCGA ACGG CCGA
20229 TTCG * 5 19/20 TTCG TTCG TTCG TTCG TTTG
37262 ACCA * 5 18/20 ACCA ACCA ACCA ACTA ACCG
37463 GGAC * 5 19/20 GGAC GGAC GTAC GGAC GGAC
47655 ACAA * 6 22/24 ACAA ACAA ACAA ACAA ACAA CAAA
48400 TGAC * 8 29/32 TGAC TGAC TGAC TGAC TGAC TGAC TGAC CGGG
112005 AGCC * 5 18/20 AGCC AGCC AGTC AGCC AGCA
113100 CCTG * 5 18/20 CCTG CCTG CCTG GCTG CCTA
113154 AGCG * 5 19/20 AGCG AGCG AGCT AGCG AGCG
188449 AAAT * 5 18/20 AAAT AAAT AACT AAAT AACT
191531 CCGT * 5 18/20 CCGT CCGT CTGT CCAT CCGT
246750 AATA * 6 22/24 AATA AATA AATA AATA CATA TATA
259772 TATG * 5 18/20 TATG TATG TATT TATA TATG
291324 CACT * 6 22/24 CACT CACT CACT CACT AACT CACA
-----------------------------------------------------------------------------
Total sequence length......................... 295377
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 AATA-1 AGCG-1 AGCC-1 ACAA-1 ACCA-1 TATG-1 TTCG-1
TGAC-1 TCAG-1 GGAC-1 CACT-1 CCAT-1 CCTG-1 CCGA-1 CCGT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7294291|gb|AE003531.1|AE003531 Drosophila melanogaster genomic scaffold 142000013386050 section 18 of 54, complete sequence
Position Repeat Coverage Repeat
16962 ACAT * 5 19/20 ACAT AAAT ACAT ACAT ACAT
34110 GTCA * 5 18/20 GTCA GTCA GTCA GTCG TTCA
43835 ATTA * 5 18/20 ATTA ATTA ATTT ATTA AATA
88780 TGAC * 6 22/24 TGAC TGAA TGAC TGAC TGAC TGAG
105068 GTTT * 5 18/20 GTTT GTTT GTTT GTTT GCTG
115464 AAAT * 5 18/20 AAAT AAAT TAAT AAAT TAAT
141460 CAAA * 6 22/24 CAAA CAAA CAAA CAAA CGAA GAAA
172175 TAGT * 5 18/20 TAGT TAGT TAGT TAGT TGGC
227401 TCAC * 5 18/20 TCAC TCAC TCAC TCGC TTAC
230093 TCTT * 5 18/20 TCTT TTTT TTTT TCTT TCTT
232627 TCAA * 5 18/20 TCAA TCAT TCAA TCAA TCAG
247663 ATAC * 5 18/20 ATAC ATAC ATAC ATAT ATAT
248134 CCAG * 6 22/24 CCAG GCAG TCAG CCAG CCAG CCAG
-----------------------------------------------------------------------------
Total sequence length......................... 274277
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 13
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 ATAC-1 ATTA-1 ACAT-1 TAGT-1 TGAC-1 TCAA-1 TCAC-1
TCTT-1 GTTT-1 GTCA-1 CAAA-1 CCAG-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7294232|gb|AE003530.1|AE003530 Drosophila melanogaster genomic scaffold 142000013386050 section 17 of 54, complete sequence
Position Repeat Coverage Repeat
42355 CAGC * 5 18/20 CAGC CAGC CAGG CAGC CAGG
60178 CACC * 5 18/20 CACC CACC CACC CACA CTCC
71072 TAGA * 10 36/40 TAGA TAGA TAGA TAGA TGGA TAGA TAGA CAGA TAGA GACA
120703 TGAT * 5 18/20 TGAT TGAT TGAT TGAT GGAC
133773 GTCA * 5 18/20 GTCA TTCA GTCA GTCT GTCA
141333 TTTG * 5 18/20 TTTG TTTG TTTG TTTA TGTG
143614 TTAT * 11 40/44 TTAT GTAT TTAT TTAT TTAT TTAT TTAT TTAT TTGT TTAT TAAG
160849 TTGT * 5 18/20 TTGT TTGT TTGT TTGT TTCC
178835 CCTG * 6 22/24 CCTG CCTC CCTG CCTT CCTG CCTG
216190 ATTC * 5 18/20 ATTC ATTC ATTC AATC ATTA
217418 GAGT * 5 19/20 GAGT TAGT GAGT GAGT GAGT
221715 CTGT * 6 23/24 CTGT CTGT CTGT CTGT CTGT CTGC
221886 ATAC * 6 22/24 ATAC ATGC ATAC ATAC ATAC GTAC
229859 GCAG * 5 18/20 GCAG GCAG GCAG GCAG GCGA
238647 GTAT * 5 19/20 GTAT GTAC GTAT GTAT GTAT
277556 GTCC * 5 19/20 GTCC GTCC GTCC GTCT GTCC
-----------------------------------------------------------------------------
Total sequence length......................... 279136
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
ATAC-1 ATTC-1 TAGA-1 TTAT-1 TTTG-1 TTGT-1 TGAT-1 GAGT-1
GTAT-1 GTCA-1 GTCC-1 GCAG-1 CAGC-1 CACC-1 CTGT-1 CCTG-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7294198|gb|AE003529.1|AE003529 Drosophila melanogaster genomic scaffold 142000013386050 section 16 of 54, complete sequence
Position Repeat Coverage Repeat
1648 CGGT * 6 22/24 CGGT CGGT CGGT CGGT CGGT TGAT
4240 AAAT * 5 18/20 AAAT AAAG AAAT AAAT AAAA
17959 CAAA * 5 19/20 CAAA CAAA CAAA CAAG CAAA
18028 AATG * 6 23/24 AATG AATG AATG AATA AATG AATG
23336 TCTA * 5 18/20 TCTA TCCA TCTA TCTC TCTA
31991 AGCG * 5 18/20 AGCG GGCG AGCG AGCG AGAG
79125 TCCA * 6 23/24 TCCA TCCA TCCA TCCA TTCA TCCA
106202 CATA * 5 18/20 CATA CAGA CATA TATA CATA
121971 AGTG * 6 22/24 AGTG AGTG AGTG AGCG AGTG AGTT
123900 TCAG * 6 22/24 TCAG TCAG TCAG CCAG GCAG TCAG
123959 GTCA * 5 18/20 GTCA TTCA GCCA GTCA GTCA
143321 TGTT * 5 19/20 TGTT TGTT TGTT TGTT TGCT
157224 TCTA * 5 18/20 TCTA TCTA TATA TCTC TCTA
166904 CCAA * 11 42/44 CCAA CCAA CCAA CCAA CCAA CCAA CCAA CTAA CCAA GCAA CCAA
168856 ACAT * 5 18/20 ACAT ACAT ACAT ATAT AGAT
192639 TAAG * 5 18/20 TAAG TAAG TAAG TAAC TAAT
-----------------------------------------------------------------------------
Total sequence length......................... 252224
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 AATG-1 AGTG-1 AGCG-1 ACAT-1 TAAG-1 TGTT-1 TCAG-1
TCTA-2 TCCA-1 GTCA-1 CAAA-1 CATA-1 CGGT-1 CCAA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7294145|gb|AE003528.1|AE003528 Drosophila melanogaster genomic scaffold 142000013386050 section 15 of 54, complete sequence
Position Repeat Coverage Repeat
24160 TTTG * 5 18/20 TTTG TTTG TTTG TTTT TTTT
38134 AAGA * 5 18/20 AAGA AAGA AAGA AAGA GAAA
110253 TGTT * 5 19/20 TGTT TGTT TGTT TGTT TATT
113355 GGTG * 5 18/20 GGTG GCTG GGTG GCTG GGTG
120015 AATA * 5 18/20 AATA AATA AATT AATA AAAA
120548 CTGT * 5 18/20 CTGT CTGT CTGG CTGT CTGG
139664 TAAA * 5 18/20 TAAA TAAA TAAA TAAG TAAC
145689 CAGA * 5 18/20 CAGA CAGC CAGA CAGC CAGA
206468 TTAA * 5 18/20 TTAA TTAA TTAA TTAA TATA
240662 AGAT * 5 18/20 AGAT AGAT AGAT AGAA AGAG
251202 GCGT * 5 18/20 GCGT GCGT GCGT GCGT GTGC
271360 AAAT * 6 22/24 AAAT ATAT AAGT AAAT AAAT AAAT
271754 TTCT * 6 22/24 TTCT TTCT TTCT TTAT TTTT TTCT
280146 TTTA * 5 18/20 TTTA TTTA TTTA TTTT TTGA
-----------------------------------------------------------------------------
Total sequence length......................... 283712
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 AATA-1 AAGA-1 AGAT-1 TAAA-1 TTAA-1 TTTA-1 TTTG-1
TTCT-1 TGTT-1 GGTG-1 GCGT-1 CAGA-1 CTGT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7294090|gb|AE003527.1|AE003527 Drosophila melanogaster genomic scaffold 142000013386050 section 14 of 54, complete sequence
Position Repeat Coverage Repeat
49614 TATG * 5 18/20 TATG TATT AATG TATG TATG
55516 TTTA * 5 19/20 TTTA TATA TTTA TTTA TTTA
62362 TTTG * 5 18/20 TTTG TTTA TTTT TTTG TTTG
106599 TGAA * 6 22/24 TGAA TGAA TGAA TGAA TGAA TTAC
111177 CAAA * 9 33/36 CAAA CAAA CAAA CAAA CAAA CAAA CAAG CAAA CACG
123272 CCAG * 5 18/20 CCAG TCAG CCAG TCAG CCAG
132270 CAAA * 6 23/24 CAAA CAAA CAAA CAAA CAAA AAAA
147512 AGCC * 9 34/36 AGCC AGCC AGCC AGCC AGCC AGCC AGGC AGGC AGCC
147577 GCAG * 5 18/20 GCAG GCAG TCAG GCAG CCAG
147597 CCAG * 5 19/20 CCAG CCAG CCAG CCAG GCAG
152719 AAAC * 7 27/28 AAAC AAAC AAAC AAAC AAAT AAAC AAAC
156110 TACC * 6 22/24 TACC TACC TACC TACC TACC TATA
180256 TATG * 5 18/20 TATG TATG TACA TATG TATG
182021 AACC * 5 18/20 AACC AACC ACCC ACCC AACC
185080 AAAT * 5 18/20 AAAT AAAT ACAT AAAT AGAT
190303 AAAT * 8 30/32 AAAT AAAT AAAT AAAT AAAT AAAT AAGC AAAT
238683 AAAT * 5 18/20 AAAT ACAT AAAT AAAT AAGT
264389 CAAC * 5 19/20 CAAC CAAC CAAC CAAC CAAA
268089 ATAC * 7 26/28 ATAC GTAC ATAC ATAC ATAC ATAC CTAC
270372 TGTA * 5 18/20 TGTA TATA TGTA TGTA AGTA
-----------------------------------------------------------------------------
Total sequence length......................... 279679
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-3 AAAC-1 AACC-1 ATAC-1 AGCC-1 TATG-2 TACC-1 TTTA-1
TTTG-1 TGAA-1 TGTA-1 GCAG-1 CAAA-2 CAAC-1 CCAG-2
----------------------------------------------------------------------------
Genomic sequence...
gi|7294043|gb|AE003526.1|AE003526 Drosophila melanogaster genomic scaffold 142000013386050 section 13 of 54, complete sequence
Position Repeat Coverage Repeat
24163 CTGG * 6 23/24 CTGG CTGG CTGG CTGG CTGG CTGA
66812 ATGT * 5 18/20 ATGT ATGT ATGT ACAT ATGT
83053 GCTG * 5 18/20 GCTG GCTG GCTG GATG GCAG
133083 AGTT * 5 18/20 AGTT AGTT AGTT AGTT AGAA
134131 TAAA * 6 22/24 TAAA TAAA TAAA TAAA TAAC AAAA
160549 TTTA * 5 18/20 TTTA TGTA TTTA TTTA TATA
175933 AATA * 6 24/24 AATA AATA AATA AATA AATA AATA
182047 ATCG * 5 18/20 ATCG ATCG ATCG ATCG ATTA
-----------------------------------------------------------------------------
Total sequence length......................... 280887
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 8
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AATA-1 ATGT-1 ATCG-1 AGTT-1 TAAA-1 TTTA-1 GCTG-1 CTGG-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7294009|gb|AE003525.1|AE003525 Drosophila melanogaster genomic scaffold 142000013386050 section 12 of 54, complete sequence
Position Repeat Coverage Repeat
2858 GTAT * 5 18/20 GTAT GTAT GTAT GTGT GTCT
28010 CCCT * 5 18/20 CCCT CGCT CCCT CGCT CCCT
34010 CACC * 5 18/20 CACC AACC CACC CACC CCCC
34392 CCAT * 6 22/24 CCAT CCAT CCAT CCAT CCGT CCGT
37928 TATG * 5 18/20 TATG CATG TATG TACG TATG
58454 GCCA * 12 45/48 GCCA GCCA GCCA GCCA GCCA GCCA TCCA GCCA ACCA GCCA GCCA GTCA
73548 GTCA * 10 37/40 GTCA ATCA GCCA GTCA GTCA GTCA GTCA GTCA GCCA GTCA
73664 AGTT * 5 19/20 AGTT AGTT AGTT AGTT AGTG
103784 TGTA * 6 22/24 TGTA TGCA TGTA TGTA TGTA TATA
154690 GTAT * 5 18/20 GTAT TTAT GTAT GTAT TTAT
180490 TAAC * 5 18/20 TAAC TAAC TAAC CAAC GAAC
232399 CCAT * 5 18/20 CCAT CCAT CCAT CCAC CCAC
268342 GTTT * 6 22/24 GTTT GTTT GTTT GTTT GTTT ATTA
270586 GTCA * 5 18/20 GTCA GTCG GTCA TTCA GTCA
-----------------------------------------------------------------------------
Total sequence length......................... 291880
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AGTT-1 TAAC-1 TATG-1 TGTA-1 GTAT-2 GTTT-1 GTCA-2 GCCA-1
CACC-1 CCAT-2 CCCT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7293975|gb|AE003524.1|AE003524 Drosophila melanogaster genomic scaffold 142000013386050 section 11 of 54, complete sequence
Position Repeat Coverage Repeat
508 ATAC * 5 19/20 ATAC ATAT ATAC ATAC ATAC
749 CGCT * 8 29/32 CGCT CGCT AGCT TGCT CGCT CGCT CGCT CGCG
78642 AGTC * 5 18/20 AGTC AGTC AGGC AGTC CGTC
89841 CGCT * 5 18/20 CGCT CGCT CGCA CGCT CGGT
109521 CCAC * 5 18/20 CCAC CAAC CTAC CCAC CCAC
109830 CCAC * 5 18/20 CCAC CAAC CTAC CCAC CCAC
136099 TTAT * 5 18/20 TTAT TTAT TTAT TTTT TAAT
158637 ATAA * 5 19/20 ATAA ATAA ATAA ATAT ATAA
159068 TTAT * 5 18/20 TTAT TTAT TTAT TTAT TTTG
186942 CACC * 5 18/20 CACC CACC CACC CACA CACA
196713 TGAC * 8 31/32 TGAC TGAC TGGC TGAC TGAC TGAC TGAC TGAC
213716 CAGT * 13 47/52 CAGT CAGT CAGT TAGT CAGT CAGT CAGT CAGT CAGG CACT CAGT TAGT CATT
219782 ACAT * 5 18/20 ACAT ACAT ACAT ACAT ATAG
228991 CATA * 6 22/24 CATA CATA CGTA CATA CGTA CATA
248671 AATT * 5 20/20 AATT AATT AATT AATT AATT
268708 TTTA * 6 22/24 TTTA TTTG TTTA TTTA TTTA TTTT
269722 CACC * 5 18/20 CACC CGGC CACC CACC CACC
273346 AAAG * 5 19/20 AAAG AAAG AAAG AAAG AAAA
276261 TTTG * 5 20/20 TTTG TTTG TTTG TTTG TTTG
281743 TGTA * 6 22/24 TGTA TGTA TGTA TGTA TGTG TGCA
297541 CATC * 6 22/24 CATC CATA CATC CATA CATC CATC
303633 AACA * 5 18/20 AACA AACA AACA AGCA AACT
317640 GCCA * 5 18/20 GCCA CCCA GCCA TCCA GCCA
318702 CACT * 5 19/20 CACT CACT CGCT CACT CACT
328655 CATA * 5 18/20 CATA CATA CATA CAAA CGTA
330700 ACAT * 5 19/20 ACAT ACAT ACAT ACAT ATAT
-----------------------------------------------------------------------------
Total sequence length......................... 335868
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 26
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAG-1 AATT-1 AACA-1 ATAA-1 ATAC-1 AGTC-1 ACAT-2 TTAT-2
TTTA-1 TTTG-1 TGAC-1 TGTA-1 GCCA-1 CATA-2 CATC-1 CAGT-1
CACT-1 CACC-2 CGCT-2 CCAC-2
----------------------------------------------------------------------------
Genomic sequence...
gi|7293946|gb|AE003523.1|AE003523 Drosophila melanogaster genomic scaffold 142000013386050 section 10 of 54, complete sequence
Position Repeat Coverage Repeat
63574 CCAT * 6 22/24 CCAT CCAT CCAT CCAT CCAT CCTG
76734 CTGT * 5 18/20 CTGT CTGT CTGT CTGT GTCT
82168 CCAC * 5 18/20 CCAC CCAC TTAC CCAC CCAC
90866 GCCA * 6 23/24 GCCA GCCA GCCA GCCA CCCA GCCA
91786 TGCC * 5 18/20 TGCC TGCC TGTC TGTC TGCC
135772 TGAT * 10 36/40 TGAT TGAT TGAT TGAT TGAT TGAT TGAT TGAC CGAT TGCC
158587 CGCC * 5 19/20 CGCC CGCT CGCC CGCC CGCC
163464 TTCG * 5 18/20 TTCG GTGG TTCG TTCG TTCG
201677 AAAC * 6 22/24 AAAC CAAC AAGC AAAC AAAC AAAC
207984 AAAT * 6 22/24 AAAT AAAT AAAG AAAT AAAT ACAT
225551 TAAT * 5 18/20 TAAT GAAT TATT TAAT TAAT
260073 CAAA * 5 18/20 CAAA CAAA AACA CAAA CAAA
276939 GTGC * 6 22/24 GTGC GTGC GTGC GTGC GTGT GTGT
-----------------------------------------------------------------------------
Total sequence length......................... 283337
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 13
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 AAAC-1 TAAT-1 TTCG-1 TGAT-1 TGCC-1 GTGC-1 GCCA-1
CAAA-1 CTGT-1 CGCC-1 CCAT-1 CCAC-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7293918|gb|AE003522.1|AE003522 Drosophila melanogaster genomic scaffold 142000013386050 section 9 of 54, complete sequence
Position Repeat Coverage Repeat
7309 TAAA * 5 19/20 TAAA AAAA TAAA TAAA TAAA
8367 ACTT * 5 18/20 ACTT ATTT ACAT ACTT ACTT
19195 AATC * 5 18/20 AATC AATC AATA CATC AATC
36677 TATG * 5 18/20 TATG TATG TATG TATG CACG
46630 ACTC * 5 19/20 ACTC ACTC ACTC ACTC AATC
66993 GACT * 5 18/20 GACT GAGT GACT GACT GACC
67574 TTGT * 6 22/24 TTGT TGGT TTGT TTGT TTGA TTGT
77734 TACA * 5 18/20 TACA TATA TACA TACA TATA
83375 AGTC * 5 18/20 AGTC AGTC AGTC AGTT AGTT
115593 TGCC * 5 18/20 TGCC TGCC TGCC TGCC TTCA
127892 AAAC * 6 22/24 AAAC AAAC AAAC AAAC AAAC AACA
129589 GTAT * 6 22/24 GTAT GTAT GTAT GTAT GTAG GTGT
146115 ACAT * 5 19/20 ACAT ACAT ACAT ACAT ATAT
208641 TTAT * 5 18/20 TTAT TTAT TTAA ATAT TTAT
210355 ACAT * 5 18/20 ACAT ACAT ACAC ACAT ATAT
236350 TTTC * 5 18/20 TTTC TTTC TTTC TTTC ATTT
237239 GTAA * 5 18/20 GTAA TTAA GTAA GTAA TTAA
285873 TTGT * 5 18/20 TTGT TTGT TTTT TTGT TTTT
287707 TACA * 5 18/20 TACA TACA TACA TACA TAGG
-----------------------------------------------------------------------------
Total sequence length......................... 290837
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAC-1 AATC-1 AGTC-1 ACAT-2 ACTT-1 ACTC-1 TAAA-1 TATG-1
TACA-2 TTAT-1 TTTC-1 TTGT-2 TGCC-1 GACT-1 GTAA-1 GTAT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7293901|gb|AE003521.1|AE003521 Drosophila melanogaster genomic scaffold 142000013386050 section 8 of 54, complete sequence
Position Repeat Coverage Repeat
13862 AAAT * 5 20/20 AAAT AAAT AAAT AAAT AAAT
59553 CATT * 5 18/20 CATT CATC CATT TATT CATT
77894 GTCA * 6 22/24 GTCA GTTT GTCA GTCA GTCA GTCA
84321 TGAC * 5 18/20 TGAC TGAC AGAC TGAC GGAC
105056 AGTT * 5 18/20 AGTT AGTT AGTT AGTT ATTC
111456 CATA * 5 18/20 CATA CATA CATA CATA TGTA
118991 CGTA * 5 18/20 CGTA CATA CGTA TGTA CGTA
125393 AACA * 7 26/28 AACA AACA AACA AACA AATA AACA AACT
131755 TTCT * 5 18/20 TTCT TTCT TTCT TTTT TTTT
154814 ATGT * 5 18/20 ATGT ATGT ATGT ACAT ATGT
157771 TTAT * 5 19/20 TTAT TTAT TTAT TTAT TTTT
159616 ATGT * 5 19/20 ATGT ATGT ATGT ATGT ATAT
162435 ATAC * 5 18/20 ATAC ATAC TTAC ATAC TTAC
163305 CATA * 5 18/20 CATA CATA CTTA CGTA CATA
164187 TACA * 6 22/24 TACA TACA TACA TACA TATG TACA
168334 CATA * 5 18/20 CATA CATA CACA CATA CATG
170949 TTGG * 5 18/20 TTGG TGGG TTGG TGGG TTGG
175963 GACA * 5 19/20 GACA GAAA GACA GACA GACA
183442 TATT * 5 19/20 TATT TATA TATT TATT TATT
237479 TACA * 5 18/20 TACA TACA TACA TATA TATA
237504 ATAC * 5 18/20 ATAC ATAT ATAC ATAT ATAC
252059 AATG * 5 18/20 AATG AATG AATG AATG AGCG
253608 AGTT * 6 22/24 AGTT GGCT AGTT AGTT AGTT AGTT
270185 ATAC * 5 18/20 ATAC ATAC ATAC ATAT ATAA
-----------------------------------------------------------------------------
Total sequence length......................... 271237
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 24
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 AATG-1 AACA-1 ATAC-3 ATGT-2 AGTT-2 TATT-1 TACA-2
TTAT-1 TTGG-1 TTCT-1 TGAC-1 GACA-1 GTCA-1 CATA-3 CATT-1
CGTA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7293883|gb|AE003520.1|AE003520 Drosophila melanogaster genomic scaffold 142000013386050 section 7 of 54, complete sequence
Position Repeat Coverage Repeat
2695 TTGT * 5 18/20 TTGT TTAT TTGT TTGT TTTT
12500 TGGC * 5 18/20 TGGC TGAC TGGC TGGC TTGC
65812 ATTT * 5 18/20 ATTT ATTT ATTT ATTT TTTC
86573 GGAT * 7 26/28 GGAT AGAT GGAT GGAT GGAT GGAT GGCT
99733 TATG * 6 22/24 TATG TATG TATA AATG TATG TATG
190959 TTAT * 5 18/20 TTAT TTAT TTAT TTAT TTCA
200105 AAAC * 5 18/20 AAAC AAAC AAAT AAAC AAAT
209885 CATA * 5 18/20 CATA CATA CATA CATA TGTA
230503 CCAG * 6 22/24 CCAG CCAG CCAG CCAG CCAG CAAT
262267 GTGG * 5 18/20 GTGG GTGG CTGG GTGG TTGG
-----------------------------------------------------------------------------
Total sequence length......................... 292222
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 10
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAC-1 ATTT-1 TATG-1 TTAT-1 TTGT-1 TGGC-1 GTGG-1 GGAT-1
CATA-1 CCAG-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7293842|gb|AE003519.1|AE003519 Drosophila melanogaster genomic scaffold 142000013386050 section 6 of 54, complete sequence
Position Repeat Coverage Repeat
37846 TATT * 5 18/20 TATT TATT TATT TTTT TTTT
53277 TTTA * 5 18/20 TTTA TTTA TTTA TTTC TTTT
67636 AAAT * 6 22/24 AAAT AAAT AAAT ATTT AAAT AAAT
100246 TCTT * 5 18/20 TCTT TCTT TCGT TCAT TCTT
106694 AAAG * 5 18/20 AAAG GAAG AAAG AAAG AGAG
106973 TATG * 6 23/24 TATG TATG TATG TATG TATG CATG
108364 ATAC * 5 18/20 ATAC ATAC ATAT GTAC ATAC
109849 TATG * 5 18/20 TATG TATG TATT TATG TATT
118469 ATGT * 5 18/20 ATGT GTGT ATAT ATGT ATGT
147530 ACAT * 6 22/24 ACAT ACAT ACAA ACAT ACAT CCAT
149728 GTCA * 5 19/20 GTCA GTCA GTCA GTCA GTCG
150479 TATG * 5 18/20 TATG TATT TATG TACG TATG
158658 CATA * 6 23/24 CATA TATA CATA CATA CATA CATA
188696 TACA * 5 18/20 TACA TACA TACA TCCA AACA
195470 CTGA * 5 18/20 CTGA CTGA GTGA ATGA CTGA
241529 TTTA * 5 18/20 TTTA TTTA TTTA TAGA TTTA
-----------------------------------------------------------------------------
Total sequence length......................... 276243
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 AAAG-1 ATAC-1 ATGT-1 ACAT-1 TATT-1 TATG-3 TACA-1
TTTA-2 TCTT-1 GTCA-1 CATA-1 CTGA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7293817|gb|AE003518.1|AE003518 Drosophila melanogaster genomic scaffold 142000013386050 section 5 of 54, complete sequence
Position Repeat Coverage Repeat
525 TATG * 5 18/20 TATG TATG TATG TATA TCTG
24949 GTCT * 5 18/20 GTCT GTCC GTCT GTCT GTCC
33596 ATTT * 6 22/24 ATTT ACTT ATTT ATTT ATTT GTTT
34206 TACG * 5 18/20 TACG TACG TACG TACC TACC
83730 TAAA * 6 22/24 TAAA TAAA TAAA TATA TAAA AAAA
95969 GGTG * 6 22/24 GGTG GGTG GTTG GGTG AGTG GGTG
99766 CTGG * 5 18/20 CTGG CTGG CTCG CTGG CTGT
115715 ATGT * 5 18/20 ATGT ATGT ACAT ATGT ATGT
123792 TGAA * 6 23/24 TGAA TGCA TGAA TGAA TGAA TGAA
127450 TTAT * 5 18/20 TTAT TTAT TTGT TTTT TTAT
141450 GTCC * 5 19/20 GTCC GTCC GTCT GTCC GTCC
142494 ATTT * 6 22/24 ATTT ATTT GTTA ATTT ATTT ATTT
157284 ACGG * 5 18/20 ACGG ACGC ACAG ACGG ACGG
195090 ATAC * 6 22/24 ATAC ATAC ATAC ATAC ATAC ACAT
214017 CAAT * 6 22/24 CAAT CAAT GAAG CAAT CAAT CAAT
223582 GCTG * 5 18/20 GCTG GCTG GCTG GCTC GATG
235878 AAAT * 5 18/20 AAAT AAAG AAAC AAAT AAAT
-----------------------------------------------------------------------------
Total sequence length......................... 280289
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 17
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 ATAC-1 ATTT-2 ATGT-1 ACGG-1 TAAA-1 TATG-1 TACG-1
TTAT-1 TGAA-1 GTCT-1 GTCC-1 GGTG-1 GCTG-1 CAAT-1 CTGG-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7293794|gb|AE003517.1|AE003517 Drosophila melanogaster genomic scaffold 142000013386050 section 4 of 54, complete sequence
Position Repeat Coverage Repeat
10020 TATT * 7 26/28 TATT TATT TATT TATT TATT TATT ATTT
10082 TTAT * 6 22/24 TTAT TTAT TTAT TTAT TTAT TATT
14096 TGGA * 8 30/32 TGGA TGGT TGCA TGGA TGGA TGGA TGGA TGGA
28286 CCAT * 7 26/28 CCAT CCAT CCAT CCAT CCAT CCGT CCCT
105991 TTAA * 6 23/24 TTAA TTAA TTAA TTAA TTAA TTAT
186285 TATT * 5 18/20 TATT TATT TCTA TATT TATT
217060 TGAC * 6 22/24 TGAC TGAG TGAC TGAC TGAA TGAC
237209 TCAT * 10 36/40 TCAT TCAT TCAT TCAT TCAT TCAT TCAT TCAT TCAA GCGG
------------------------------