Tri-Nucleotide Repeats in Genomic Sequences
Tri-Nucleotide Repeats in
Drosophila melanogaster Chromosome-Arm-3L Genomic Scaffolds
Genomic sequence
gi|7316100|gb|AE002584.1|AE002584 Drosophila melanogaster genomic scaffold 142000013386045, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7292550|gb|AE003483.1|AE003483 Drosophila melanogaster genomic scaffold 142000013386045 section 17 of 17, complete sequence
Position Repeat Coverage Repeat
1586 GTG * 7 19/21 GTG GTG GCG GTG GTG GTG GGG
3478 GGT * 7 19/21 GGT GGA AGT GGT GGT GGT GGT
31586 CAG * 7 19/21 CAG CAC CAG CAG CAG CGG CAG
32182 CAT * 8 22/24 CAT CAT CAT CAT CAT CAG AAT CAT
86743 TGC * 7 19/21 TGC TGC CGC TGC TGC AGC TGC
88482 GGT * 8 22/24 GGT GGG GGT GGT GGT TGT GGT GGT
124266 GAC * 8 22/24 GAC GAG GAC GAG GAC GAC GAC GAC
138449 CAG * 9 25/27 CAG CAG CAG CAG CAG CAG GAG CAA CAG
159057 AGC * 7 19/21 AGC AGC AGC AGC AGC CAC AGC
159200 TGC * 7 19/21 TGC TGT TGC TGC TGC TCC TGC
159494 GCC * 7 19/21 GCC GTT GCC GCC GCC GCC GCC
167767 ACA * 7 19/21 ACA ACA ACA ACA ACA ACA GAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 175489
Total number of repeats detected.............. 12
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 0 GCA + 2 CAG + 0 GCT + 0 CTG + 2 TGC = 5
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 2 GGT + 1 GTG + 0 TGG = 3
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7292521|gb|AE003482.1|AE003482 Drosophila melanogaster genomic scaffold 142000013386045 section 16 of 17, complete sequence
Position Repeat Coverage Repeat
2614 CAA * 7 19/21 CAA CAA CAA CAG TAA CAA CAA
3699 CTG * 12 33/36 CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTT TGG
12222 TGC * 8 24/24 TGC TGC TGC TGC TGC TGC TGC TGC
12429 AGC * 9 25/27 AGC AGA AGT AGC AGC AGC AGC AGC AGC
16701 CCT * 8 22/24 CCT CAT CCT CCT CCT CTT CCT CCT
42344 GCA * 8 23/24 GCA GCG GCA GCA GCA GCA GCA GCA
45684 TGC * 8 22/24 TGC TGC CGC TGC TGC TGC TGT TGC
46181 TGA * 8 22/24 TGA TGA TGA TGA TGA TGA TGC CGA
46265 AGA * 7 19/21 AGA AGA AGA AGA AGA AGC AGC
49932 CAT * 7 19/21 CAT CAT CGT CCT CAT CAT CAT
52289 ACA * 11 30/33 ACA CCA AGA ACA ACA ACA ACA ACA ACA ACA ATA
78977 GCA * 7 19/21 GCA GAA GCA GTA GCA GCA GCA
93263 CCT * 8 22/24 CCT CCT CCT CCT CCT CCT CCT TTT
93603 TCA * 10 27/30 TCA TCT TCA TCG TCA TCA TCA TCA TCA CCA
101283 GCA * 7 19/21 GCA AGA GCA GCA GCA GCA GCA
103514 GCA * 8 22/24 GCA GCA GCA GCA GCA GCA ACA TCA
103748 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAA CTG
105267 AGC * 12 33/36 AGC TGC AGC AGC AGC AGC AGC AGC AGC AGC AAC AGG
121641 GAT * 10 27/30 GAT GAT TAT AAT GAT GAT GAT GAT GAT GAG
131610 ACA * 7 19/21 ACA ACA AGA GCA ACA ACA ACA
138564 GCA * 7 19/21 GCA GCA GCA CCA GCA GCA GCT
140278 GCA * 7 19/21 GCA ACA GCA ACA GCA GCA GCA
140303 CAG * 8 22/24 CAG CAG CAT CAG CAG CAG CAG CAT
142283 GAG * 10 27/30 GAG GAG GAG GAG GAG GAG GAG GAG CAA CAG
162719 CAG * 7 19/21 CAG CAG CGG CAA CAG CAG CAG
167415 ACA * 9 25/27 ACA ACT ACA ACA ACA ACA AAA ACA ACA
176341 GAG * 7 19/21 GAG GAG GAG GAG GAG ACG GAG
206292 TGC * 8 22/24 TGC TGC TGC TGA TGC TGC TGC GGC
206448 TGT * 9 25/27 TGT TGT TGT TGC AGT TGT TGT TGT TGT
231580 AGC * 7 19/21 AGC AGC AGC AGC AGG AGC TGC
243607 ATT * 7 19/21 ATT ATT ATT ATT ATT ATT CAT
247889 ACA * 8 22/24 ACA ACA ACA GCA ACA AGA ACA ACA
291839 TTA * 7 19/21 TTA CTA TTA TTA TTA TTA TTT
-----------------------------------------------------------------------------------------
Total sequence length......................... 301682
Total number of repeats detected.............. 33
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGA 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 3 2 1 0 0 0 0 0 0 0 0 0 0
ACA 4 3 1 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 3 3 0 0 0 0 0 0 0 0 0 0 0
TCA 1 0 1 0 0 0 0 0 0 0 0 0 0
GAT 1 0 1 0 0 0 0 0 0 0 0 0 0
GAG 2 1 1 0 0 0 0 0 0 0 0 0 0
GCA 6 6 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 3 3 0 0 0 0 0 0 0 0 0 0 0
CTG 1 0 1 0 0 0 0 0 0 0 0 0 0
CCT 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 1 ATT + 1 TTA + 0 TAT = 2
0 AAG + 1 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 1
0 AAC + 4 ACA + 1 CAA + 0 GTT + 0 TTG + 1 TGT = 6
0 ATG + 1 TGA + 1 GAT + 1 CAT + 0 ATC + 1 TCA = 4
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 2 GAG + 2 CCT + 0 CTC + 0 TCC = 4
3 AGC + 6 GCA + 3 CAG + 0 GCT + 1 CTG + 3 TGC = 16
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7292481|gb|AE003481.1|AE003481 Drosophila melanogaster genomic scaffold 142000013386045 section 15 of 17, complete sequence
Position Repeat Coverage Repeat
6837 TTA * 8 22/24 TTA TTT TTA TTA TTA TTA TTT TTA
34323 CAT * 12 33/36 CAT CAT CAA CAT CAA CAT CAT CAT CAT CAT CAC CAT
36564 GCA * 8 22/24 GCA GCA GCA ACA GCA GCA GCG GCA
39297 TAT * 9 25/27 TAT TAT TAT TAT TAT TAT TTA TAT TAT
53811 AAT * 7 21/21 AAT AAT AAT AAT AAT AAT AAT
94374 GCA * 8 22/24 GCA GCA GCA ACA TCA GCA GCA GCA
113566 CCA * 7 19/21 CCA ACA CCA ACA CCA CCA CCA
125524 AAC * 7 19/21 AAC AAC AGC AAC AAC ATC AAC
130874 TCC * 8 22/24 TCC TCC TCC TCC TCC TCC ACC GCC
131321 ACC * 7 19/21 ACC ACC ACC GCC ACC ACC TCC
153175 TGG * 8 22/24 TGG TGG GGG TGG AGG TGG TGG TGG
153566 TGA * 7 19/21 TGA TGA TGA TGA TGG TGG TGA
154483 GTG * 7 19/21 GTG GTT GTA GTG GTG GTG GTG
158957 GGT * 7 20/21 GGT GGT GGT GGT GGG GGT GGT
159019 TGG * 7 19/21 TGG CGG TGG TGG TGG AGG TGG
159242 GGT * 8 23/24 GGT GGT GGT GGT GGT GGG GGT GGT
159325 TGG * 7 19/21 TGG TGG TGG TGG GGG TGG TGT
162776 AAT * 7 19/21 AAT AAC AAT AAT AAT AAA AAT
193977 GTC * 7 19/21 GTC GTC ATC GTC GTC GTC ATC
196093 TGA * 7 19/21 TGA AGA TGA TGA TGC TGA TGA
209158 ATC * 7 19/21 ATC ATC ATC GCC ATC ATC ATC
235885 CTT * 7 19/21 CTT CTT CTT CTT CCT CTT CAT
251907 GCT * 8 22/24 GCT GCT GCT GCT GCT GCT GCT TTT
268929 CAG * 9 25/27 CAG CAG CAG CAG CAG CAG CAG CAG ATG
268968 CAG * 8 22/24 CAG CAG CAG CAG CAG ATG CAG CAG
269453 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CAC
276804 CAC * 7 19/21 CAC CAC CAC CAC CAC CCC CCC
283557 CAG * 8 23/24 CAG CCG CAG CAG CAG CAG CAG CAG
283589 GCA * 10 27/30 GCA GCA GCA ACA ACA GCA GCA GCA GCA ACA
303655 AGC * 7 19/21 AGC AGC AGC AGC AGC AGC TGT
-----------------------------------------------------------------------------------------
Total sequence length......................... 319765
Total number of repeats detected.............. 30
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 2 2 0 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 2 2 0 0 0 0 0 0 0 0 0 0 0
TGG 3 3 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTC 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCA 3 2 1 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 0 1 0 0 0 0 0 0 0 0 0 0
CAG 4 4 0 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
2 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 1 TAT = 4
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 1
1 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 2 TGA + 0 GAT + 1 CAT + 1 ATC + 0 TCA = 4
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 1 TCC = 1
1 AGC + 3 GCA + 4 CAG + 1 GCT + 0 CTG + 0 TGC = 9
0 ACG + 0 CGA + 0 GAC + 0 CGT + 1 GTC + 0 TCG = 1
1 ACC + 1 CCA + 1 CAC + 2 GGT + 1 GTG + 3 TGG = 9
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7292415|gb|AE003480.1|AE003480 Drosophila melanogaster genomic scaffold 142000013386045 section 14 of 17, complete sequence
Position Repeat Coverage Repeat
11879 TGC * 9 25/27 TGC TGC TGC TGC TGT TGT TGC TGC TGC
12361 GCA * 7 19/21 GCA GCA ACA ACA GCA GCA GCA
18240 GCA * 7 20/21 GCA GCA GCA GCA GCA ACA GCA
44726 ACA * 7 19/21 ACA ACA ACA ACA ACC ACA ATA
52715 ATG * 8 22/24 ATG ATG ATC ATA ATG ATG ATG ATG
94331 AGG * 8 22/24 AGG AGG AGG AGA AGC AGG AGG AGG
95887 ATA * 7 19/21 ATA ATA ATA ATA ATA ATG AGA
101471 GCT * 12 34/36 GCT GCT GCT GCT GCT GCT GCT GTT GCT GCT GCT GAT
104222 CAG * 10 27/30 CAG CAA AAG CAG CAG CAG CAG CAG CAG CAC
105513 TGA * 7 19/21 TGA TGG TGA TGG TGA TGA TGA
117141 CAG * 7 20/21 CAG CAG CAG CAG CAG CAG GAG
143368 ATC * 7 20/21 ATC ATC ATC ATC ATC ATC ATT
147229 CGC * 8 22/24 CGC CGC CCC CGC CGC CGC CGC CGT
168262 CTC * 7 19/21 CTC CTG CTC CTC CTC TTC CTC
169723 ATC * 7 19/21 ATC ATC AAC AGC ATC ATC ATC
255152 TCC * 7 19/21 TCC TCC TCA TCG TCC TCC TCC
256266 AAC * 8 22/24 AAC AAG AAC AAC AAT AAC AAC AAC
257277 CTC * 7 19/21 CTC CTC CTC CTC CTC CTT CCC
-----------------------------------------------------------------------------------------
Total sequence length......................... 310450
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 2 2 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
GCT 1 0 1 0 0 0 0 0 0 0 0 0 0
CAG 2 1 1 0 0 0 0 0 0 0 0 0 0
CTC 2 2 0 0 0 0 0 0 0 0 0 0 0
CGC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 1 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 2
1 ATG + 1 TGA + 0 GAT + 0 CAT + 2 ATC + 0 TCA = 4
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 0 GAG + 0 CCT + 2 CTC + 1 TCC = 4
0 AGC + 2 GCA + 2 CAG + 1 GCT + 0 CTG + 1 TGC = 6
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 1 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7292381|gb|AE003479.1|AE003479 Drosophila melanogaster genomic scaffold 142000013386045 section 13 of 17, complete sequence
Position Repeat Coverage Repeat
25348 CTG * 7 19/21 CTG ATG CTG CTG CTG GTG CTG
25416 GCA * 7 19/21 GCA ACT GCA GCA GCA GCA GCA
25437 ACA * 7 19/21 ACA ACA ACA ACA ACA ACA ATC
35554 TAG * 8 24/24 TAG TAG TAG TAG TAG TAG TAG TAG
41012 AGC * 13 36/39 AGC AGC AGC AGC AGC AGC AGC AGC AGC AGA AAG AGC AGC
47333 CAT * 7 19/21 CAT CAT CAT CAC CAT CAC CAT
47364 ATC * 8 22/24 ATC ATC ATC ATC ATC ATC ATT AGC
56582 TGC * 7 19/21 TGC TGA TGC TGC TGC TGT TGC
56639 TGT * 7 19/21 TGT TGC TGT TGT TGT TGC TGT
94049 CTG * 7 19/21 CTG CTG CTG CTG CTG CTG CGC
94327 GCT * 8 22/24 GCT GCA GCT GCT GCT GTT GCT GCT
94361 CTG * 7 19/21 CTG TTG CTG CTG CTG TTG CTG
94643 CTG * 7 19/21 CTG CTG CTG CTG CAG CTG TTG
101330 AAC * 7 19/21 AAC AAC AAA AAG AAC AAC AAC
113630 GCT * 13 36/39 GCT GCT GTT GCT GCT GCT GCT GCT GCG GCT GCT GCT GCG
113907 GCT * 10 28/30 GCT GCT GCT GCT GTT GCT GCT GCT GCT GCA
113945 TGC * 8 24/24 TGC TGC TGC TGC TGC TGC TGC TGC
114033 GCT * 7 19/21 GCT GGT GGT GCT GCT GCT GCT
139181 GCA * 14 38/42 GCA GCA GCA AAA GCA GCA GCA GCA GCA GCA GCA GCA ACA TCA
139224 GCA * 7 19/21 GCA GCA GCA GCA GCA GCA ACT
139281 AGC * 7 20/21 AGC CGC AGC AGC AGC AGC AGC
143336 CAG * 7 19/21 CAG CTG CAG CAG CAG CAG CAT
145543 GCA * 12 33/36 GCA ACA GCA GCA GCA ACA GCA GCA GCA ACA GCA GCA
147790 CAA * 7 20/21 CAA CAA CAA TAA CAA CAA CAA
151277 CAG * 8 22/24 CAG CAG CAC CAT CAG CAG CAG CAG
152798 GCC * 7 19/21 GCC GCC GCT GCC GCC GCC GCA
168784 ACA * 7 19/21 ACA ACA ACA ACA ACA ACA ATT
179090 GCA * 11 31/33 GCA GCA GCG GCA GCA GCA GCA GCA GCA TCA GCA
179317 GCA * 14 38/42 GCA GCA GCA GCA GCA GCA GCA ACT GCA ACA GCA GCA GCA ACA
180164 TGC * 7 19/21 TGC TGC TGC TGC TGC TGC TTG
180409 TGC * 10 27/30 TGC TGC TGC CGC TGC TGC TGC TGC TGT TGT
180454 CTG * 8 22/24 CTG CTG CTG CTT CTG CGG CTG CTG
181027 GAT * 7 19/21 GAT GAT GAT GAT GAT GAT GGG
190418 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CAA
208079 AAT * 7 19/21 AAT AAA AAA AAT AAT AAT AAT
257800 CAG * 10 28/30 CAG CAG CAG CAG CAG CAA CAG CAA CAG CAG
261791 GGT * 8 22/24 GGT GGT AGT GGC GGT GGT GGT GGT
271882 CAT * 11 30/33 CAT CAT CAT CAT CGT CAT CGT CAT CAT TAT CAT
279514 TGG * 7 19/21 TGG TGG TGG TGG TGG TGC TGC
286703 CTG * 8 22/24 CTG CTG CTG TTG CTG CTG CTG ATG
286981 AGC * 10 27/30 AGC AGC AGC AAC ATC AGC AGC AGC AGC AAC
290144 CAA * 7 19/21 CAA CAA CAA AAA CAA CAA CAG
292547 GGT * 7 20/21 GGT GGT GGT GGT AGT GGT GGT
292580 TGA * 10 27/30 TGA TGA TGA TGA TGG TGA TGA CGA TGA TGT
297580 CAA * 8 22/24 CAA CAA CAA CAA CAA TAA TAA CAA
298900 CAG * 7 19/21 CAG CAA CAG CAG CAG GAG CAG
300739 GCA * 15 41/45 GCA GCA GCA GCA ACA GCA GCA GCA GCA GCA GCA TCA GCA TCA CCA
300832 GCA * 7 20/21 GCA GCA GCA ACA GCA GCA GCA
-----------------------------------------------------------------------------------------
Total sequence length......................... 309883
Total number of repeats detected.............. 48
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 3 1 1 1 0 0 0 0 0 0 0 0 0
ACA 2 2 0 0 0 0 0 0 0 0 0 0 0
TAG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 0 1 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 4 3 1 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCA 8 3 2 3 0 0 0 0 0 0 0 0 0
GCT 4 2 1 1 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 3 3 0 0 0 0 0 0 0 0 0 0 0
CAT 2 1 1 0 0 0 0 0 0 0 0 0 0
CAG 5 4 1 0 0 0 0 0 0 0 0 0 0
CTG 6 6 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 2 ACA + 3 CAA + 0 GTT + 0 TTG + 1 TGT = 7
0 ATG + 1 TGA + 1 GAT + 2 CAT + 1 ATC + 0 TCA = 5
0 AGT + 0 GTA + 1 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
3 AGC + 8 GCA + 5 CAG + 4 GCT + 6 CTG + 4 TGC = 30
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 2 GGT + 0 GTG + 1 TGG = 3
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7292360|gb|AE003478.1|AE003478 Drosophila melanogaster genomic scaffold 142000013386045 section 12 of 17, complete sequence
Position Repeat Coverage Repeat
12853 TCC * 7 19/21 TCC TCC TCC TCC TCC CCC TCG
13710 CAA * 11 30/33 CAA CAA CAA CAA CAA CAA CAA CAA CTA TAA GAA
18099 GCC * 8 22/24 GCC GCC GCC GCC GCC GTT GCC GCC
19027 AAC * 8 23/24 AAC AAC AAC AAC AAC AAC AAC AAT
25392 TTG * 12 33/36 TTG CTG TTG TTG GTG TTG TTG TTG TTG ATG TTG TTG
25605 CAA * 7 19/21 CAA TAA CAA CAA CGA CAA CAA
25711 CAA * 7 19/21 CAA CAA CAA CAG AAA CAA CAA
35179 TGC * 18 49/54 TGC TGC AGA TGC TGC TGC TGC TGC TGC TGT TGC TGC TGC TGC TGT TGC TGT TGC
35490 GTT * 11 30/33 GTT GTT GTT GAT GCT GTT GTT GTT GTT GTT GCT
36731 TTA * 10 27/30 TTA TGA TTA TTA TTA TTA TAA TTA TTA TTT
37869 ATT * 7 19/21 ATT ATT ATT ATT ATT ATT GTG
40218 GCA * 8 22/24 GCA GCC GCA GCA GCA GCA TCA GCA
40243 CAG * 7 20/21 CAG CAG CAG CAG CAG CAT CAG
44272 CAT * 7 19/21 CAT CAT CAT CAG CAT CAG CAT
44602 CAA * 7 19/21 CAA CAG CAA CAG CAA CAA CAA
59675 GCA * 9 25/27 GCA GCA GCA GCA GCA GCC GCA ACA GCA
59742 CAG * 7 19/21 CAG CGG CAG CAG CAG CAG CAT
64401 TGT * 7 19/21 TGT TGT TGT TGT TGT TGT GCT
71083 GAG * 7 19/21 GAG GAG GAG GAG GAA GAC GAG
76929 ATA * 14 38/42 ATA ATA ATA ATA ATA ATA ATA ATA ATA ACA ATA ACC ATA ATG
87521 CAT * 10 27/30 CAT GAT CAT CAT CAT CCT CAT CAT CAT CGT
89973 GCA * 7 19/21 GCA GCA GCT GCA GCG GCA GCA
103441 AAT * 8 22/24 AAT AAT AAT AAT TAT AAT AAT TAT
106850 GTT * 7 20/21 GTT GTT GTT GTT GTT GTT GCT
131585 TTG * 9 25/27 TTG TTC TTG TTG TTG TTG TTG TTG CTG
193231 ATT * 7 19/21 ATT ATT ATT TTT ATT TTT ATT
209571 CAC * 7 19/21 CAC CAC CAT CAC CAC CAC CAT
275851 AAC * 7 19/21 AAC AAC AAC AAC AAC ACC AGC
275886 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CAA
275985 CCA * 8 22/24 CCA CCA CCA CCT GCA CCA CCA CCA
277132 GCA * 8 22/24 GCA GCA GCA ACA GCA GCA GCA ACA
277302 CAG * 15 41/45 CAG CAG CAG CAA CAG CAG CAG CAG CAG CAG CAG CAA CAC CAG CAA
277475 GCA * 8 22/24 GCA GCA GCA GCA TCA ACA GCA GCA
277942 CAG * 8 22/24 CAG CAG CAA CAG CAA CAG CAG CAG
300689 GCA * 10 27/30 GCA GCA GCA ACA GCA GCA GCA ACA GCA ACA
-----------------------------------------------------------------------------------------
Total sequence length......................... 317218
Total number of repeats detected.............. 35
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 2 2 0 0 0 0 0 0 0 0 0 0 0
ATA 1 0 0 1 0 0 0 0 0 0 0 0 0
ATT 2 2 0 0 0 0 0 0 0 0 0 0 0
TTA 1 0 1 0 0 0 0 0 0 0 0 0 0
TTG 2 1 1 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 0 0 0 1 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 2 1 1 0 0 0 0 0 0 0 0 0 0
GCA 6 5 1 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 4 3 1 0 0 0 0 0 0 0 0 0 0
CAT 2 1 1 0 0 0 0 0 0 0 0 0 0
CAG 5 4 0 1 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 1 ATA + 0 TAA + 2 ATT + 1 TTA + 0 TAT = 5
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
2 AAC + 0 ACA + 4 CAA + 2 GTT + 2 TTG + 1 TGT = 11
0 ATG + 0 TGA + 0 GAT + 2 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 1 TCC = 2
0 AGC + 6 GCA + 5 CAG + 0 GCT + 0 CTG + 1 TGC = 12
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 1 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7292303|gb|AE003477.1|AE003477 Drosophila melanogaster genomic scaffold 142000013386045 section 11 of 17, complete sequence
Position Repeat Coverage Repeat
6137 GCT * 7 19/21 GCT GCT GCC GCT GCT GCT GGT
21186 CAG * 10 27/30 CAG CCG CCG CAG CAG CAG CAG CAG CAG CCG
43300 GCA * 7 19/21 GCA GTA GCA GCA GCG GCA GCA
86602 CAG * 7 20/21 CAG CAG CAG CAG CAA CAG CAG
86659 CAG * 8 22/24 CAG CAG CAG CAG CAG TTG CAG CAG
86697 GCA * 10 27/30 GCA GCA GCA GCA ACA ACA GCA GCA GCA CCA
88673 CAG * 7 19/21 CAG CAG CAG CAT CTG CAG CAG
88703 CAG * 8 22/24 CAG CAG CAG CAA CAG CAG GAG CAG
163251 CAG * 7 19/21 CAG CAG CAG CAG CAG CAG ACG
165743 TCG * 7 19/21 TCG TCC GCG TCG TCG TCG TCG
166461 CAG * 8 22/24 CAG CAC CAA CAG CAG CAG CAG CAG
167154 CAG * 8 22/24 CAG CAA CAG CAG CAG CAG CAG CTG
171860 AAC * 7 20/21 AAC AAC AAC AAC AAC AAC AAA
210267 GAC * 7 19/21 GAC GAC GAC GAC GAC GAG GAG
223406 GAG * 7 19/21 GAG GAG GAT GAT GAG GAG GAG
225024 AAG * 7 21/21 AAG AAG AAG AAG AAG AAG AAG
302000 CAA * 8 22/24 CAA CAA CAA CAA CAG CAG CAA CAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 304734
Total number of repeats detected.............. 17
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 1 1 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 8 7 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
1 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 1
1 AAC + 0 ACA + 1 CAA + 0 GTT + 0 TTG + 0 TGT = 2
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 1
0 AGC + 2 GCA + 8 CAG + 1 GCT + 0 CTG + 0 TGC = 11
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 1 TCG = 2
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7292275|gb|AE003476.1|AE003476 Drosophila melanogaster genomic scaffold 142000013386045 section 10 of 17, complete sequence
Position Repeat Coverage Repeat
31602 CTG * 8 22/24 CTG CTG CTG CTG CGG CAG CTG CTG
32610 CTG * 15 41/45 CTG CTG CTG TTG CTG CTG CTG CTG CTG CTG TTG CTG TTG TTG CTG
32656 TGC * 10 27/30 TGC TGC TGC TGC TGC TGT TGC TGC TGT AGC
36896 CTG * 7 19/21 CTG CTG TTG CTG CTG CTG TTG
36942 TGC * 7 19/21 TGC TGC TGC TGC TGC TGC AGG
37079 CTG * 7 19/21 CTG CTG CGG CTG CTG CTG CAG
37205 CTG * 8 22/24 CTG CTG CTG CTG TTG TTG CTG CTG
37334 CTG * 8 22/24 CTG GTG TTG CTG CTG CTG CTG CTG
37540 TGT * 7 19/21 TGT TGT TGT TGC TGT TGC TGT
37692 TGC * 10 27/30 TGC TGC TGC TGC TGT TGC TGT TGC TGC TGT
39438 TGC * 7 19/21 TGC TGC TGC TGC TGC TGT TGG
39462 TGC * 8 22/24 TGC TGC TGT TGC TGC TGC GGC TGC
39540 TGC * 14 39/42 TGC TGC TGG TAC TGC TGC TGC TGC TGC TGT TGC TGC TGC TGC
46925 ACA * 8 22/24 ACA ACA ACG ACA ACA ACA ACA ACC
63765 CTG * 7 19/21 CTG CCG CTG CTT CTG CTG CTG
65694 TTA * 7 19/21 TTA TTA TTA TTA TTA TTA TAT
66471 CTT * 8 22/24 CTT CTT CTG CTT CTT CTT CTT CTG
78025 CAA * 7 19/21 CAA CAA CAA CAG CAG CAA CAA
79691 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG AAG AAG
81675 GTT * 8 22/24 GTT GAT GTT GTT GTT GAT GTT GTT
86453 AAT * 9 25/27 AAT AAT AAT AAT AAT AAT AAT AAC AAG
90827 TGC * 7 19/21 TGC TGC TGC TGC TCT TGC TGC
102639 TGT * 7 19/21 TGT TGC TGC TGT TGT TGT TGT
108582 TCA * 8 22/24 TCA ACA TCA TCA TCA TCG TCA TCA
114237 TGC * 8 22/24 TGC TGC TGC TGT TGT TGC TGC TGC
114375 GCT * 8 22/24 GCT GTT GCT GTT GCT GCT GCT GCT
114437 TGC * 18 50/54 TGC TGC TGC TGC TGC TGC TGC TGT TGC TGC TGC TGC TGC TGA TGT TGC TGC TGG
114497 TGC * 8 22/24 TGC TGC TGC TGT TGC TGT TGC TGC
116510 GAT * 7 19/21 GAT GAT GAT GAT GTT GAT GAG
124999 TGT * 7 19/21 TGT TGC TGT TGT TCT TGT TGT
150030 TTG * 7 19/21 TTG TTG TTG TTA TTG TTA TTG
155386 AGT * 7 19/21 AGT AGT AGT GGT AGT AGT GGT
163160 AGC * 7 19/21 AGC AGC AGC AGC AGC AGT AGA
167299 AGC * 14 38/42 AGC AGC AGC AGC AAC AGC AGC AGC AGC AAC AGC AGC AAC TGC
167347 AGC * 7 19/21 AGC AGC ATC AGC AGC AGC AAC
190084 GTC * 7 19/21 GTC GCC GTC GTC ATC GTC GTC
191331 GCA * 8 22/24 GCA GCA ACA GCA ACA GCA GCA GCA
209527 ATA * 18 50/54 ATA ATA ACA ATA ATA ATA ACA ATA ATA ATA ATA ATA TTA ATA ATA ATT ATA ATA
231194 GTG * 10 28/30 GTG GTG GTG CTG GTG GTG GTG GGG GTG GTG
257624 CGA * 7 19/21 CGA CCA CGA TGA CGA CGA CGA
278443 AAC * 8 22/24 AAC AAA AAC AAC ACC AAC AAC AAC
278571 ACA * 7 19/21 ACA GCA ACA ACA ACC ACA ACA
-----------------------------------------------------------------------------------------
Total sequence length......................... 306945
Total number of repeats detected.............. 42
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 0 0 0 1 0 0 0 0 0 0 0 0
AGT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 3 2 0 1 0 0 0 0 0 0 0 0 0
ACA 2 2 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 3 3 0 0 0 0 0 0 0 0 0 0 0
TGC 10 6 2 1 1 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 0 1 0 0 0 0 0 0 0 0 0 0
GTC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 7 6 0 1 0 0 0 0 0 0 0 0 0
CGA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 1 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 3
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 1
1 AAC + 2 ACA + 1 CAA + 1 GTT + 1 TTG + 3 TGT = 9
0 ATG + 0 TGA + 1 GAT + 0 CAT + 0 ATC + 1 TCA = 2
1 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
3 AGC + 1 GCA + 1 CAG + 1 GCT + 7 CTG + 10 TGC = 23
0 ACG + 1 CGA + 0 GAC + 0 CGT + 1 GTC + 0 TCG = 2
0 ACC + 0 CCA + 0 CAC + 0 GGT + 1 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7292236|gb|AE003475.1|AE003475 Drosophila melanogaster genomic scaffold 142000013386045 section 9 of 17, complete sequence
Position Repeat Coverage Repeat
12623 CAG * 7 19/21 CAG CAG CAG TCG CAG CAG CAG
21934 GGT * 10 28/30 GGT GGT CGT GGT AGT GGT GGT GGT GGT GGT
34886 TGC * 7 19/21 TGC AGT TGC TGC TGC TGC TGC
55918 TGC * 7 19/21 TGC TGG TGG TGC TGC TGC TGC
57156 CTG * 10 27/30 CTG CTG CTG TTG TTG CTG CTG CTG CTG ATG
69537 TCA * 7 20/21 TCA TCA TCA TCA TCA TCA TCG
103449 TGT * 11 30/33 TGT TGT TGT TGT TGT TGT TGT TGG TGT GTT TGT
107428 CCG * 8 22/24 CCG CCT CCT CCG CCG CCG CCG CCG
109108 CTG * 8 22/24 CTG CTG CTG CTG TTG CTG CTG CAG
109133 TGC * 8 23/24 TGC TGC TGC TGC TGC TGC TGT TGC
112865 GTA * 8 22/24 GTA GTA GTA GTA GTA GTA GTC GTG
113754 GCC * 7 19/21 GCC GCC GCT GCT GCC GCC GCC
123204 CCT * 8 22/24 CCT CCT CCT ACT CCT CCC CCT CCT
123228 CCA * 8 22/24 CCA CCA CCA CCA CCA CCA CCT CCT
125648 CAA * 9 25/27 CAA CTG CAA CAA CAA CAA CAA CAA CAA
125704 AAC * 7 19/21 AAC AAC AAC AAC AAC AAC ATT
125839 GCT * 7 20/21 GCT GCT GCT GCT GCT GCT GCA
140111 AGC * 7 19/21 AGC AAC TGC AGC AGC AGC AGC
161190 CAA * 7 20/21 CAA CAA CAA CAC CAA CAA CAA
164940 CTC * 8 22/24 CTC CTC CTT CTC CTC CTC CTG CTC
183381 ACA * 8 22/24 ACA ACA ACA ACA CCA GCA ACA ACA
185261 GAT * 8 22/24 GAT GAT GAG GAT GAT GAT GAT GAC
185963 GAC * 8 23/24 GAC GAC GAA GAC GAC GAC GAC GAC
193546 CCA * 11 30/33 CCA CCC CCA CCA CCA CCA CCA CCA CCA CCA CGG
259424 ATA * 7 19/21 ATA ATA ATA ATA ATA ATC GTA
266349 CCT * 7 19/21 CCT CCT CCT CCT CCT TCT TCT
268816 CTG * 7 19/21 CTG TTG CTG TTG CTG CTG CTG
268858 CTG * 8 22/24 CTG CTG CTG CTG CTG CTG TTG TTG
268889 TGC * 7 19/21 TGC TGC TGC TGC TGT TGC TGT
269251 CTG * 10 27/30 CTG CTG CTG CTG ATG TTG CTG CTG CTG TTG
276268 CTG * 11 30/33 CTG CTG CTG TTG CTA CTG CTG CTG CTG CAG CTG
276542 CTC * 8 22/24 CTC CTC CTG CTC CTC CTC CTC CGC
277104 CTG * 11 31/33 CTG CTG CTG CTG CTG CTG CTG CTG CTG ATG ATG
282503 TGC * 11 30/33 TGC TGT TGC TGC TGC TGC TGC TGC TGC TGA TGA
-----------------------------------------------------------------------------------------
Total sequence length......................... 304231
Total number of repeats detected.............. 34
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 5 4 1 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTA 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 0 1 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 7 3 4 0 0 0 0 0 0 0 0 0 0
CTC 2 2 0 0 0 0 0 0 0 0 0 0 0
CCA 2 1 1 0 0 0 0 0 0 0 0 0 0
CCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 1 ACA + 2 CAA + 0 GTT + 0 TTG + 1 TGT = 5
0 ATG + 0 TGA + 1 GAT + 0 CAT + 0 ATC + 1 TCA = 2
0 AGT + 1 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 2 CCT + 2 CTC + 0 TCC = 4
1 AGC + 0 GCA + 1 CAG + 1 GCT + 7 CTG + 5 TGC = 15
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 2 CCA + 0 CAC + 1 GGT + 0 GTG + 0 TGG = 3
0 GGC + 0 GCG + 0 CGG + 1 GCC + 1 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7292198|gb|AE003474.1|AE003474 Drosophila melanogaster genomic scaffold 142000013386045 section 8 of 17, complete sequence
Position Repeat Coverage Repeat
93952 AGC * 7 19/21 AGC AGC AGC ACC AGC AGC AGT
192686 ACA * 8 22/24 ACA ACA ACA ACA ACA ACA GCA GCA
240194 TGC * 7 19/21 TGC TGC TGC TGC GGC TGC TGT
240563 CTC * 7 19/21 CTC CTG CTC CTG CTC CTC CTC
271961 TGT * 10 28/30 TGT TGT TGT TGT TGT TGC TGT TGT TGT TGC
289320 CCA * 7 19/21 CCA CCA GCA CCA CCA CCA TCA
289531 CAG * 10 27/30 CAG CAG CAG CAG CAG CAG CAG CAG CAA CGA
289695 AGC * 11 31/33 AGC AGC AGC AGC AGC AGC AGC AGC AAC AAC AGC
291451 CCT * 7 20/21 CCT CCT CCT CCT CAT CCT CCT
293261 AAC * 7 20/21 AAC AAA AAC AAC AAC AAC AAC
295564 ATG * 7 20/21 ATG ATG ATG ATG ATG ATG ATC
296684 CAG * 8 22/24 CAG CAG CAA CAG CAG CAG CAG CAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 306364
Total number of repeats detected.............. 12
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 1 1 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 1 1 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 1 ACA + 0 CAA + 0 GTT + 0 TTG + 1 TGT = 3
1 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 1 CCT + 1 CTC + 0 TCC = 2
2 AGC + 0 GCA + 2 CAG + 0 GCT + 0 CTG + 1 TGC = 5
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 1 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7292168|gb|AE003473.1|AE003473 Drosophila melanogaster genomic scaffold 142000013386045 section 7 of 17, complete sequence
Position Repeat Coverage Repeat
28566 GAG * 12 33/36 GAG CAG GAG AAG GAG GAG GAG GAG GAG GAG GAG GGG
40652 TGC * 15 41/45 TGC TGC GGC TGC TGC TGC TGC TCC TGC TGT TGC TGC TGC GGC TGC
64757 TGC * 8 22/24 TGC TGC TGT TGC TGT TGC TGC TGC
86606 CAT * 7 19/21 CAT CAC CAT CAT CAT CAC CAT
86690 CAG * 7 19/21 CAG CAT CAC CAG CAG CAG CAG
89089 TGC * 7 19/21 TGC TGC TGC TGC TGC TGA TGA
89110 TGA * 7 19/21 TGA TGA TGA TGA TGA GGA GGA
95471 CAG * 11 30/33 CAG CAG CAG CAG CAA CAG CAA CAG CAG CAG CAC
103357 GCC * 7 19/21 GCC ACC GCC GCC GCC GCC GCT
161912 CAG * 7 19/21 CAG CAG CAG CAG CTG CAG CAT
241821 CTT * 7 19/21 CTT CTT CTT CTT CTC TTT CTT
279485 GAG * 9 26/27 GAG GAG GAG GAG GAG GAG GAG GAG GAC
280990 AAT * 7 20/21 AAT AAT AAT AAT AAT AAT AGT
283664 CTG * 8 22/24 CTG CTG CTG CTG TTG CTG TTG CTG
286617 TGG * 12 33/36 TGG TGG TGT TGG TGG TGG TGG TGT TGG TGA TGG TGG
-----------------------------------------------------------------------------------------
Total sequence length......................... 304106
Total number of repeats detected.............. 15
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 3 2 0 1 0 0 0 0 0 0 0 0 0
GAG 2 1 1 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 3 2 1 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 1
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 1 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 2 GAG + 0 CCT + 0 CTC + 0 TCC = 2
0 AGC + 0 GCA + 3 CAG + 0 GCT + 1 CTG + 3 TGC = 7
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 1 TGG = 1
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7292093|gb|AE003472.1|AE003472 Drosophila melanogaster genomic scaffold 142000013386045 section 6 of 17, complete sequence
Position Repeat Coverage Repeat
54890 TTA * 7 19/21 TTA TTA TTA TTA TTA TTT TTT
59088 CAG * 7 20/21 CAG CAG CAG CAG CGG CAG CAG
64724 AGC * 7 19/21 AGC TGC AGC AGC AGC AAC AGC
79724 TGC * 9 25/27 TGC TGC TGC TGC TGC TGA TGC TGT TGC
86123 AGC * 7 19/21 AGC CCC AGC AGC AGC AGC AGC
92328 TCC * 8 22/24 TCC TCC TCT TCC TCC TCC TCC TGC
98667 GTT * 8 22/24 GTT GTA GTT GTT GTT CTT GTT GTT
98700 GTG * 7 20/21 GTG GTG GTG GTG GTG GTG CTG
126425 CTT * 8 22/24 CTT CTT CGA CTT CTT CTT CTT CTT
138921 GAC * 11 30/33 GAC GAC GAC GAC GAC GAC GAC GAT GAC GAT GAT
141446 GAG * 7 19/21 GAG GAG GAG CAG GAG TAG GAG
161087 CAG * 7 19/21 CAG AAG CAG CAG CAG AAG CAG
211840 CAA * 7 19/21 CAA CAA CAA CGA CAA CAA CTA
212549 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CAA
269519 CAG * 8 22/24 CAG CAG CAA CAG CAC CAG CAG CAG
270733 GCA * 8 23/24 GCA ACA GCA GCA GCA GCA GCA GCA
270860 CAG * 8 22/24 CAG CAG CAG CAG CAA CAT CAG CAG
270916 GCA * 11 31/33 GCA GCA GCA GCA GCA GCA GGA GCA ACA GCA GCA
-----------------------------------------------------------------------------------------
Total sequence length......................... 303191
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 0 1 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 1 1 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 5 5 0 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 1
0 AAC + 0 ACA + 1 CAA + 1 GTT + 0 TTG + 0 TGT = 2
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 1 TCC = 2
2 AGC + 2 GCA + 5 CAG + 0 GCT + 0 CTG + 1 TGC = 10
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 1 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7292041|gb|AE003471.1|AE003471 Drosophila melanogaster genomic scaffold 142000013386045 section 5 of 17, complete sequence
Position Repeat Coverage Repeat
28232 GGA * 8 22/24 GGA GGA ACA GGA GGA GGA GGA GGA
49466 GTT * 7 19/21 GTT GTT GTT GTT GTT TTT GTG
58652 CAG * 7 19/21 CAG CAG CAG CTT CAG CAG CAG
125741 CTC * 9 26/27 CTC CTC CTC CTC CTC CTC CTC CTC CTG
126886 TCC * 7 19/21 TCC CCC TCC TCC TCC CCC TCC
128692 CTG * 11 32/33 CTG CTG CTG CTG CTG CTG CTG CTG CTG CTT CTG
173912 CAT * 11 31/33 CAT CAT CAT CAT CAT CAT CAT CAC CAT CAT CAC
174034 TTG * 7 19/21 TTG TTG TTG TTG ATA TTG TTG
174299 ATC * 8 22/24 ATC ATC ATC ATC ATC ATC ATC AGA
206518 AGG * 12 33/36 AGG AGT AGG AGG AGT AGG AGG AGG AGG AGG AGT AGG
212439 GAT * 8 22/24 GAT GAT GAT GAT GAT GAT GAT GTA
234426 AAC * 7 19/21 AAC AAC AAC AAC AGC AAC AGC
250648 ACT * 7 19/21 ACT ACT ACT ACT ACT ACT TGT
251201 CCA * 7 19/21 CCA CCA CCA CCA CCA CCA CTG
263446 ATC * 7 19/21 ATC ATC ATA ATC ATC ATA ATC
273530 AAT * 7 19/21 AAT AAT AAT AAT AAT AAA AAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 301109
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 2 2 0 0 0 0 0 0 0 0 0 0 0
AGG 1 0 1 0 0 0 0 0 0 0 0 0 0
ACT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 0 1 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 0 1 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 0 CAA + 1 GTT + 1 TTG + 0 TGT = 3
0 ATG + 0 TGA + 1 GAT + 1 CAT + 2 ATC + 0 TCA = 4
0 AGT + 0 GTA + 0 TAG + 1 ACT + 0 CTA + 0 TAC = 1
1 AGG + 1 GGA + 0 GAG + 0 CCT + 1 CTC + 1 TCC = 4
0 AGC + 0 GCA + 1 CAG + 0 GCT + 1 CTG + 0 TGC = 2
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 1 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7292017|gb|AE003470.1|AE003470 Drosophila melanogaster genomic scaffold 142000013386045 section 4 of 17, complete sequence
Position Repeat Coverage Repeat
1191 TAA * 8 22/24 TAA TAA TAA TAA TTT TAA TAA TAA
4584 GAC * 8 22/24 GAC GAC GAC GAC GAC GAC GAT GCC
42399 CAA * 7 19/21 CAA CAA CTA CAA CAA CAA CTA
44982 AAC * 11 32/33 AAC AAC AAC AAC AAC AAC AAT AAC AAC AAC AAC
76629 TGT * 8 22/24 TGT TAT TGT TGT TGT TGT TGT TGC
107698 CTG * 8 22/24 CTG ATG GTG CTG CTG CTG CTG CTG
115621 TGT * 8 22/24 TGT TGC TGT TGC TGT TGT TGT TGT
129132 ATC * 7 19/21 ATC ATC CTC ATC GTC ATC ATC
135540 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CCG CTG
151554 CGC * 7 20/21 CGC CGC CGC CGC CGC CGC CGA
175915 GAT * 7 19/21 GAT GAT GTT GCT GAT GAT GAT
178739 GCT * 7 19/21 GCT GGA GCT GCT GCT GCT GCT
180655 CTG * 8 22/24 CTG CTG CTG CTG CTG TAG CTG CTG
180981 TGC * 7 20/21 TGC TGC TGC GGC TGC TGC TGC
192928 GCA * 7 19/21 GCA GGA GCA GCA GCA ACA GCA
209391 TAA * 7 19/21 TAA TAA TAA TAA TCG TAA TAA
211590 CTG * 7 19/21 CTG CTG CTG GTG GTG CTG CTG
214568 GCT * 9 25/27 GCT GCT GCT GCT GCT GCT GCT TCT TCT
214605 CTT * 10 28/30 CTT GTT CTT CTT CTT CCT CTT CTT CTT CTT
220488 GCA * 7 19/21 GCA GCA GCA GCC GCA GTA GCA
224228 AGC * 7 19/21 AGC AGC AAC AAC AGC AGC AGC
224284 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CAA
235936 CAG * 8 22/24 CAG CAG CAG CGG CAG CAG CAG CAA
238534 TCA * 8 22/24 TCA TCA TCA TCA TCA TCA TCG ACA
245286 TTA * 7 19/21 TTA TTA TTA TTG TTA TTA TAA
246921 TGT * 7 20/21 TGT CGT TGT TGT TGT TGT TGT
-----------------------------------------------------------------------------------------
Total sequence length......................... 302423
Total number of repeats detected.............. 26
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 0 1 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 2 2 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 3 3 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 3 3 0 0 0 0 0 0 0 0 0 0 0
CTT 1 0 1 0 0 0 0 0 0 0 0 0 0
CTG 3 3 0 0 0 0 0 0 0 0 0 0 0
CGC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 2 TAA + 0 ATT + 1 TTA + 0 TAT = 3
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 1
1 AAC + 0 ACA + 1 CAA + 0 GTT + 0 TTG + 3 TGT = 5
0 ATG + 0 TGA + 1 GAT + 0 CAT + 1 ATC + 1 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 2 GCA + 3 CAG + 2 GCT + 3 CTG + 1 TGC = 12
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 1 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7291982|gb|AE003469.1|AE003469 Drosophila melanogaster genomic scaffold 142000013386045 section 3 of 17, complete sequence
Position Repeat Coverage Repeat
5977 GCA * 8 23/24 GCA GCA GCA GCA GCA GCA GCA ACA
26214 CTG * 7 20/21 CTG CTG CTG CTG CTG TTG CTG
33604 TGC * 10 27/30 TGC TGC TGC TGC TGA TGC TGC CGC TGC AGC
34755 GCA * 7 19/21 GCA GCA GCA GCA ACA TCA GCA
34781 AGC * 7 20/21 AGC AGC AGC AGC AGC AGC AAC
36247 CAG * 8 22/24 CAG CAG CAG CAG CAA CAG CAG CAA
41997 CAG * 11 30/33 CAG CAG CAG CAT CAG CAG CAG CAG CAG CAT CTG
66603 TGC * 8 22/24 TGC TGC TGT TGC TGC TGC TGT TGC
75299 AGT * 8 22/24 AGT AGT AGT AGT AGT AGA ATT AGT
75755 CAT * 10 27/30 CAT CAT CAT CAT CAT CCT CAT CCT CAT CGT
106052 ATC * 8 22/24 ATC TTC ATC ATC ATC GTC ATC ATC
122626 GCA * 8 23/24 GCA GCA GCA TCA GCA GCA GCA GCA
128541 TGT * 7 19/21 TGT TGT TGT TGT TGC TGT TGG
129513 TGC * 7 19/21 TGC TGC TGC TGC TGC AGT TGC
129779 GCA * 8 22/24 GCA GCA GCA GCA GCA GCA GCA ACC
179731 CAG * 7 19/21 CAG CAA CTG CAG CAG CAG CAG
197344 ATG * 8 22/24 ATG ATG ATG ATG ATG ATG TTG TTG
209220 AAT * 8 23/24 AAT AAT AAT AAT AAT AAT AAT ACT
240228 CAC * 9 25/27 CAC CAC CAC CAC CAC CAC CAC CAC AAA
240327 GGA * 9 25/27 GGA GGC GGA GGA GGA GGT GGA GGA GGA
252007 TCG * 7 19/21 TCG TCG TCG TCA TCC TCG TCG
259671 CAG * 7 19/21 CAG CAG CAA CAG GAG CAG CAG
259695 CAG * 11 30/33 CAG CAG CAG CAA CAG CAG CAG CAG CAG CAG CTT
259868 GCA * 7 19/21 GCA GCA GCA TCA GCA ACA GCA
259979 GCA * 9 25/27 GCA GCA GCA GCA ACC GCA GCA GCA GCA
296532 ATA * 18 50/54 ATA ATA ACA ATA ATA ATA ACA ATA ATA ATA ATA ATA TTA ATA ATA ATT ATA ATA
-----------------------------------------------------------------------------------------
Total sequence length......................... 301868
Total number of repeats detected.............. 26
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 0 0 0 1 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 3 2 1 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 6 6 0 0 0 0 0 0 0 0 0 0 0
CAT 1 0 1 0 0 0 0 0 0 0 0 0 0
CAG 5 3 2 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 1 TGT = 1
1 ATG + 0 TGA + 0 GAT + 1 CAT + 1 ATC + 0 TCA = 3
1 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 1 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 1
1 AGC + 6 GCA + 5 CAG + 0 GCT + 1 CTG + 3 TGC = 16
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 1 TCG = 1
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7291959|gb|AE003468.1|AE003468 Drosophila melanogaster genomic scaffold 142000013386045 section 2 of 17, complete sequence
Position Repeat Coverage Repeat
49595 TGG * 10 28/30 TGG TGG TGG TGG TGG TGG TGG TGG TAC TGG
69266 ATC * 7 20/21 ATC ATC ATC ATC ATC ATC AGC
152524 CCT * 10 27/30 CCT CCT CCT CCT CCT CCT CCT CCT CTT TTT
162344 ATT * 7 19/21 ATT TTT ATT ATT ACT ATT ATT
198310 AGC * 7 20/21 AGC AAC AGC AGC AGC AGC AGC
198576 GAC * 7 19/21 GAC GAC GAC GAC GAC AAC GTC
230490 AAC * 7 19/21 AAC AAC AAC AAC AAC AAC TGC
233665 ATT * 7 20/21 ATT ATT ATT ATT ATT ATT ATG
248435 TGT * 11 30/33 TGT TGT TGT TGT TGT TGT TGT TGT TGC TGC TGG
255057 CAG * 7 20/21 CAG CAG CAA CAG CAG CAG CAG
257750 AGC * 8 22/24 AGC AGC AGC AGC AGC AAC AAC AGC
258980 GTC * 7 20/21 GTC GTC GTC GTC GTC GTC GGC
275533 TAA * 7 20/21 TAA TAA TAA TAA TAA TAA TAT
290828 TTG * 15 41/45 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG CTG TTC TTG CCG
297675 TGC * 7 20/21 TGC TGC TGC TGC TGC TGC TTC
298624 CTT * 8 22/24 CTT CTG CTT CTG CTT CTT CTT CTT
299047 AAC * 8 23/24 AAC AAC AAC AAC AAA AAC AAC AAC
299557 TTG * 10 28/30 TTG TTG TTG TTG TTG TTG TTG TTG TTT TAG
301655 CAA * 9 25/27 CAA CAA CAA CAA CAA CAA CAC AAA CAA
302304 CCA * 11 30/33 CCA CTA CCA CCA CCA CCA CCA CCA CCA CAA CCT
-----------------------------------------------------------------------------------------
Total sequence length......................... 310120
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 2 2 0 0 0 0 0 0 0 0 0 0 0
ATT 2 2 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 2 0 1 1 0 0 0 0 0 0 0 0 0
TGT 1 0 1 0 0 0 0 0 0 0 0 0 0
TGG 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 0 1 0 0 0 0 0 0 0 0 0 0
CCT 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 2 ATT + 0 TTA + 0 TAT = 3
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 1
2 AAC + 0 ACA + 1 CAA + 0 GTT + 2 TTG + 1 TGT = 6
0 ATG + 0 TGA + 0 GAT + 0 CAT + 1 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 1 CCT + 0 CTC + 0 TCC = 1
2 AGC + 0 GCA + 1 CAG + 0 GCT + 0 CTG + 1 TGC = 4
0 ACG + 0 CGA + 1 GAC + 0 CGT + 1 GTC + 0 TCG = 2
0 ACC + 1 CCA + 0 CAC + 0 GGT + 0 GTG + 1 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7291904|gb|AE003467.1|AE003467 Drosophila melanogaster genomic scaffold 142000013386045 section 1 of 17, complete sequence
Position Repeat Coverage Repeat
46117 TAA * 7 19/21 TAA TAA TAA TAA TAA TCA TAT
98889 TGC * 7 19/21 TGC TGC TGC TGT TGC TGC TGT
98927 CTG * 10 27/30 CTG CTG TTG CTG CTT CTG CTG CTG CTG TTG
159304 CGT * 8 23/24 CGT CGT CGT CAT CGT CGT CGT CGT
256336 GAG * 7 19/21 GAG GAG GAG GAG GAG CAG AAG
267540 CAG * 10 28/30 CAG CAA CAG CAG CAG CAA CAG CAG CAG CAG
-----------------------------------------------------------------------------------------
Total sequence length......................... 298644
Total number of repeats detected.............. 6
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 0 1 0 0 0 0 0 0 0 0 0 0
CTG 1 0 1 0 0 0 0 0 0 0 0 0 0
CGT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 1
0 AGC + 0 GCA + 1 CAG + 0 GCT + 1 CTG + 1 TGC = 3
0 ACG + 0 CGA + 0 GAC + 1 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7316103|gb|AE002602.1|AE002602 Drosophila melanogaster genomic scaffold 142000013386050, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7295475|gb|AE003567.1|AE003567 Drosophila melanogaster genomic scaffold 142000013386050 section 54 of 54, complete sequence
Position Repeat Coverage Repeat
2463 TGC * 7 20/21 TGC TGC TGC TGC TGC TGC TGT
41561 AGA * 7 19/21 AGA ACT AGA AGA AGA AGA AGA
69350 AAC * 7 19/21 AAC AAC AGC AAC AAC AAC AGC
71079 ATA * 7 20/21 ATA ATA ATA ATA ATA ATA ATT
75357 GTT * 8 23/24 GTT GTT GTT GTT GTT GTT GTT GTG
-----------------------------------------------------------------------------------------
Total sequence length......................... 104808
Total number of repeats detected.............. 5
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
AGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 1 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 1
1 AAC + 0 ACA + 0 CAA + 1 GTT + 0 TTG + 0 TGT = 2
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 1 TGC = 1
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295459|gb|AE003566.1|AE003566 Drosophila melanogaster genomic scaffold 142000013386050 section 53 of 54, complete sequence
Position Repeat Coverage Repeat
16502 GAG * 7 19/21 GAG GAG GAA GAG GAG GAG CAG
25302 CAG * 7 19/21 CAG CAG CAG CAG CAC CAG CAC
27726 ATT * 8 22/24 ATT ATT ATT ATT ATT ATT ATT CTC
32026 TAA * 7 19/21 TAA TAA AAA TGA TAA TAA TAA
45258 TGT * 7 19/21 TGT CGT TGT TGT TGT TGT GGT
64991 CAT * 7 20/21 CAT CAT CAT CAT CAT CAT CTT
89149 CAG * 9 25/27 CAG CAA AAG CAG CAG CAG CAG CAG CAG
101781 GCA * 7 19/21 GCA GCG GCA GCA GCA GGA GCA
115025 GCT * 8 22/24 GCT GCT GCT ACT GCT GCT GCT GCC
118448 CAG * 7 19/21 CAG GAG CAG CAG CAG CAG CAA
121296 TAA * 7 19/21 TAA CAA TAA TAA CAA TAA TAA
135660 CAG * 7 19/21 CAG CAG CAG CAA CAG CAG GAG
180629 ATT * 7 20/21 ATT ATT ATT AGT ATT ATT ATT
183452 GCT * 11 31/33 GCT GCT GCT GCT GCT GTT GCT GCT GCT GCT GCA
184356 TGA * 11 30/33 TGA TGA TGA TGA TGA TGA TGA TAA TGT TGA TGG
202219 GTT * 7 20/21 GTT GTT GTT GTT TTT GTT GTT
202759 ATG * 11 30/33 ATG ATG ATG ATG ATG ATG ATG ATG ACG ACG TTG
223594 GCA * 15 41/45 GCA GTG GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCT ACA
229324 TGC * 8 22/24 TGC TGC TGG TGC TGC TGC TGT TGC
243477 AGC * 8 22/24 AGC AGC AGC AGC AGC AGC GGC GGC
243504 AGC * 8 22/24 AGC AGC AAC AGT AGC AGC AGC AGC
243656 CAA * 7 19/21 CAA CAA CAA CAA CAA CAC CAC
243778 AGC * 12 33/36 AGC AGC AGC AGC AGC AGC AGC AGC GAC AGC AGC AAC
243836 GCA * 11 30/33 GCA ACA GCA GCA GCG GCA GCA GCA GCA GCA GTA
243903 CAC * 7 19/21 CAC CAC CAG CAC CAC CAC GAC
254981 GCA * 7 20/21 GCA GCA GCA GCA GCA GCA GCC
-----------------------------------------------------------------------------------------
Total sequence length......................... 286716
Total number of repeats detected.............. 26
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATT 2 2 0 0 0 0 0 0 0 0 0 0 0
ATG 1 0 1 0 0 0 0 0 0 0 0 0 0
AGC 3 2 1 0 0 0 0 0 0 0 0 0 0
TAA 2 2 0 0 0 0 0 0 0 0 0 0 0
TGA 1 0 1 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 4 2 1 1 0 0 0 0 0 0 0 0 0
GCT 2 1 1 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 4 4 0 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 2 TAA + 2 ATT + 0 TTA + 0 TAT = 4
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 1 CAA + 1 GTT + 0 TTG + 1 TGT = 3
1 ATG + 1 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 1
3 AGC + 4 GCA + 4 CAG + 2 GCT + 0 CTG + 1 TGC = 14
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295423|gb|AE003565.1|AE003565 Drosophila melanogaster genomic scaffold 142000013386050 section 52 of 54, complete sequence
Position Repeat Coverage Repeat
10572 TGC * 7 19/21 TGC TGT TGC TGC TGC AGC TGC
13741 GAG * 7 19/21 GAG GAG GAG GAG GAG GCT GAG
43515 CTG * 7 19/21 CTG TTG TTG CTG CTG CTG CTG
58277 TCA * 7 19/21 TCA TCA TCA TCA TCA TGA CCA
70795 TGC * 9 25/27 TGC TGC TGC TGC TGC TGC TGC TTC AGC
71883 TGC * 10 27/30 TGC TGT TGC TGC TGC TGC TGC TGT TGC TGT
74291 TGC * 11 30/33 TGC TGT TGC TGT TGC TGC TGC TGC TGC TGC TGA
76712 GTG * 7 19/21 GTG GTG GTA GTG GTG GTA GTG
79412 TGT * 7 19/21 TGT GGT TGT TGT TGT AGT TGT
90302 CGT * 7 19/21 CGT TGT CGT CGT CAT CGT CGT
90636 GCT * 7 19/21 GCT GCT CCT GCT GCT CCT GCT
90673 CTC * 9 25/27 CTC CAC CTC CTC CTG CTC CTC CTC CTC
93527 CTG * 8 22/24 CTG CTG CTC CTG CTC CTG CTG CTG
104292 ACA * 7 19/21 ACA GCA GCA ACA ACA ACA ACA
105535 GGT * 7 19/21 GGT GGT GGT GGC GGT GTT GGT
110925 CTC * 7 19/21 CTC CTT CTC CTC CTC CTA CTC
117845 CAC * 7 19/21 CAC CGC CAC CTC CAC CAC CAC
131196 GCA * 11 30/33 GCA GCA GCA GCA GCA GCA GCA GCA GCG GTT GCA
138818 GCC * 7 19/21 GCC GCC GCC TCC GCC ACC GCC
143810 ATT * 7 19/21 ATT ATT ATT ATC ATT ATC ATT
164787 TGC * 8 22/24 TGC TGC TGT TGC TGC TGC TGT TGC
164975 CTG * 11 30/33 CTG CTG CTG ATG CTG CTG TTG CTG CTG CTG ATG
166701 CCT * 7 19/21 CCT GAT CCT CCT CCT CCT CCT
167490 CCT * 7 19/21 CCT CCG CCT CTT CCT CCT CCT
173428 CAT * 7 19/21 CAT CAT CAT CAT CAT CAT AAC
175576 AAC * 8 22/24 AAC AAC AAC AAC AAC AAG TAC AAC
180080 CTG * 9 25/27 CTG CTG CTG CGG CTG CTG CTG CTG CTA
187964 CAA * 8 22/24 CAA CAA CAA CAG CAA CAG CAA CAA
198530 TTG * 10 27/30 TTG TAC TTG TTG TTG TTG TTG TTG TTG TCG
241174 TGC * 7 19/21 TGC TGC TGC GGC TGC TGT TGC
241198 TGC * 16 44/48 TGC TGC TGC TGT TGT TGC TGC TGC TGC TGC TGC TGC TGC TGC TGG GGC
245452 CAG * 7 20/21 CAG GAG CAG CAG CAG CAG CAG
263135 TAA * 10 27/30 TAA TAA TAC TAA TAA TAA TAA TAG TAA TAG
273629 ACC * 7 19/21 ACC ACA ACC ACC ACC ACC ACG
285793 TTG * 7 20/21 TTG TTG TTG TTG TTG TTG TGG
-----------------------------------------------------------------------------------------
Total sequence length......................... 286782
Total number of repeats detected.............. 35
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 0 1 0 0 0 0 0 0 0 0 0 0
TTG 2 1 1 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 7 4 2 0 1 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 0 1 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 4 3 1 0 0 0 0 0 0 0 0 0 0
CTC 2 2 0 0 0 0 0 0 0 0 0 0 0
CGT 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 1 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 1 ACA + 1 CAA + 0 GTT + 2 TTG + 1 TGT = 6
0 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 1 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 2 CCT + 2 CTC + 0 TCC = 5
0 AGC + 1 GCA + 1 CAG + 1 GCT + 4 CTG + 7 TGC = 14
0 ACG + 0 CGA + 0 GAC + 1 CGT + 0 GTC + 0 TCG = 1
1 ACC + 0 CCA + 1 CAC + 1 GGT + 1 GTG + 0 TGG = 4
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295378|gb|AE003564.1|AE003564 Drosophila melanogaster genomic scaffold 142000013386050 section 51 of 54, complete sequence
Position Repeat Coverage Repeat
30444 TGT * 7 19/21 TGT TGT TGC TGT TGT CGT TGT
30484 ACA * 7 19/21 ACA ACA GCA GCA ACA ACA ACA
34560 GTG * 7 19/21 GTG GTG GTT GTG GTG GTG GTC
35223 TGC * 11 30/33 TGC TGC TGC TGT TGT TGC TGC TGC TGC TGC TGT
35262 TGC * 7 19/21 TGC TGT TGT TGC TGC TGC TGC
35291 ATG * 8 22/24 ATG ATG GTG ATG ATG ATG ATG GTG
66777 GAC * 7 19/21 GAC GAC GAC GAC GAC GAC AAA
87069 CAG * 10 27/30 CAG CTG CAG CAG CAG CAG CAC CAG CAG CCG
93914 GAC * 7 19/21 GAC GAC GAC GTC GAC GAC GGC
96236 TGC * 7 20/21 TGC TGC TGC TGC TGG TGC TGC
97048 ATG * 8 22/24 ATG GTG ATG ATG ATG ATG GTG ATG
139636 CTT * 8 22/24 CTT CTT CTT CTT CTT CTG CTT CTG
147226 GCA * 8 22/24 GCA GTA GCA GCA CCA GCA GCA GCA
160568 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC TGC TTG
160636 GCT * 8 23/24 GCT GCT GCT GCT GCT GCT GCT GGT
161326 AGC * 10 27/30 AGC AGC AGC AAC ATC AGC AGC AGC AGC AAC
161503 CAG * 9 25/27 CAG CAG CAG CAG CAG CAA CAG CAA CAG
163044 AGC * 7 19/21 AGC AAC AGC AAC AGC AGC AGC
215682 TCT * 7 19/21 TCT TCT TGT CCT TCT TCT TCT
233006 CTG * 7 19/21 CTG CTG CTG CTG CTG TTG GTG
239824 TGT * 7 19/21 TGT TGT TGT TGT CGT TGT TGC
246581 GAT * 13 36/39 GAT GAT AAT GAT AAT GAT GAT GAT GAT GAT GAT GAT GTT
249042 TGC * 13 36/39 TGC TGC TGT TGC TGC TTC TGC TGC TGC TGC TGC TGC TGG
249795 GTC * 13 36/39 GTC GTC GTC GTC GTC GTC GTC GTC GTC GTC GTC GCA ATC
253305 GCC * 7 19/21 GCC AAC GCC GCC GCC GCC GCC
255061 TGC * 10 27/30 TGC TGC TAT TGC TGC TGC TGC TGC TGC TGA
258416 GCT * 7 19/21 GCT GCT GCC GCT GTT GCT GCT
263627 TTG * 8 22/24 TTG TTG TTG CTG TTG TTG TTG TGG
264333 TGG * 10 28/30 TGG TGG TGG TGG TGG TGG TGA TGG TGG TGC
271156 CAT * 8 22/24 CAT CAT CAT CAT CAT CAT CGC CAT
271384 CAG * 7 19/21 CAG CAG CAG CAG GAG CGG CAG
271713 AGC * 10 27/30 AGC AGC AAC AGC AAC AGC AGC AGC AGC AAC
272019 CAG * 15 43/45 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAT CAC
272308 CAG * 7 20/21 CAG CAG CAG CAG CAG CAG CAT
272431 AGC * 8 22/24 AGC AGC AGC AGT AGA AGC AGC AGC
272609 AGC * 11 31/33 AGC AGC AGC AGC AGC AAC AGC AGC AGC AGC AGT
273014 AGC * 8 22/24 AGC AGC GCC AGC AGC AGC AGC AGC
273059 AGC * 8 23/24 AGC ACC AGC AGC AGC AGC AGC AGC
273983 GTT * 7 19/21 GTT TTT GTT GTT GTT GTT TTT
274345 TTG * 8 22/24 TTG TTC TTG CTG TTG TTG TTG TTG
280953 TGC * 7 20/21 TGC TGC TGC TGT TGC TGC TGC
280977 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC TGC CTC
283746 TTG * 7 19/21 TTG TTG TTG TTT TTG TTT TTG
284680 TGC * 7 19/21 TGC AGC TGC TGC TGC TGC TGT
-----------------------------------------------------------------------------------------
Total sequence length......................... 301840
Total number of repeats detected.............. 44
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATG 2 2 0 0 0 0 0 0 0 0 0 0 0
AGC 7 4 3 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 3 3 0 0 0 0 0 0 0 0 0 0 0
TGT 2 2 0 0 0 0 0 0 0 0 0 0 0
TGG 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 9 6 2 1 0 0 0 0 0 0 0 0 0
TCT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 0 0 1 0 0 0 0 0 0 0 0 0
GAC 2 2 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTC 1 0 0 1 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 5 3 1 1 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 1 TCT = 2
0 AAC + 1 ACA + 0 CAA + 1 GTT + 3 TTG + 2 TGT = 7
2 ATG + 0 TGA + 1 GAT + 1 CAT + 0 ATC + 0 TCA = 4
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
7 AGC + 1 GCA + 5 CAG + 2 GCT + 1 CTG + 9 TGC = 25
0 ACG + 0 CGA + 2 GAC + 0 CGT + 1 GTC + 0 TCG = 3
0 ACC + 0 CCA + 0 CAC + 0 GGT + 1 GTG + 1 TGG = 2
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295346|gb|AE003563.1|AE003563 Drosophila melanogaster genomic scaffold 142000013386050 section 50 of 54, complete sequence
Position Repeat Coverage Repeat
33432 TCC * 7 20/21 TCC TTC TCC TCC TCC TCC TCC
35333 CTG * 7 19/21 CTG CTG CTG CTG TTG CGG CTG
70915 CAT * 7 19/21 CAT CAT CAT TAT CAT CAT CGT
85377 TGC * 8 23/24 TGC TGC TGC TGC TGC TGC TGC GGC
90175 CTG * 9 25/27 CTG TTG CTG CTG TTG CTG CTG CTG CTG
97362 GCA * 7 20/21 GCA GCA GCA GCA GCA GCA ACA
101546 ATG * 8 23/24 ATG ATG ATG ATG ATG ATG ATG GTG
102351 CTG * 12 33/36 CTG CTG CTG CTG CTG CTG CTT CTC CTG CTG CTG TTG
103706 GCA * 7 20/21 GCA ACA GCA GCA GCA GCA GCA
107001 TGC * 7 19/21 TGC TGC TGC TGC TGC TGC TCG
107416 CAA * 7 19/21 CAA CAG CAG CAA CAA CAA CAA
108158 CAG * 7 19/21 CAG CAG CAG CAA CAT CAG CAG
108182 CAG * 8 23/24 CAG CAG CAG CAG CAG CAG CAG CAA
114934 AGC * 7 20/21 AGC AGC AGC AGC AAC AGC AGC
118117 TGC * 7 19/21 TGC TGG TGT TGC TGC TGC TGC
122639 CAG * 11 32/33 CAG CAG CAG CAG CAG CAG CAA CAG CAG CAG CAG
128313 TGC * 7 19/21 TGC TGC TGC TGG TGC TGC TGG
138060 CTG * 7 20/21 CTG CTA CTG CTG CTG CTG CTG
-----------------------------------------------------------------------------------------
Total sequence length......................... 277325
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 4 4 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 3 2 1 0 0 0 0 0 0 0 0 0 0
CTG 4 3 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 1 CAA + 0 GTT + 0 TTG + 0 TGT = 1
1 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 1 TCC = 1
1 AGC + 2 GCA + 3 CAG + 0 GCT + 4 CTG + 4 TGC = 14
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295332|gb|AE003562.1|AE003562 Drosophila melanogaster genomic scaffold 142000013386050 section 49 of 54, complete sequence
Position Repeat Coverage Repeat
22595 ACT * 9 25/27 ACT ACT ACT ATT ACA ACT ACT ACT ACT
31676 TCC * 10 27/30 TCC TCC TCC TCC TCC TCC TCC TCC CCA TCG
60147 TGC * 10 27/30 TGC CGC TGC TGC TGC TGC TGC TTC TGC TTC
80823 CAG * 7 19/21 CAG CAG CAA CAA CAG CAG CAG
124585 TGC * 11 30/33 TGC TGC TGC TGC TGC TGC TGC TGC TAC TGC CGG
128186 AGC * 7 20/21 AGC AGC AGC AGC AGC AGC AGT
128263 GCA * 7 19/21 GCA GCA GCA GCG GCA GCA GTA
135696 TGT * 7 19/21 TGT TGT TGT TGT TGT AGT CGT
175865 CAG * 8 22/24 CAG CAA CTG CAG CAG CAG CAG CAG
198577 CAT * 14 39/42 CAT CAT CAT CAT CAT CAT CGC CAT CAT CAT CAA CAT CAT CAT
206829 GTT * 11 30/33 GTT GTT GCT GTT GTT GTT GTT GTT GTT GTT TAT
216457 GCT * 8 22/24 GCT GCT GAT GCT GCT GCT GCC GCT
-----------------------------------------------------------------------------------------
Total sequence length......................... 249584
Total number of repeats detected.............. 12
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 0 2 0 0 0 0 0 0 0 0 0 0
TCC 1 0 1 0 0 0 0 0 0 0 0 0 0
GTT 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 0 0 1 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 1 GTT + 0 TTG + 1 TGT = 2
0 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 1 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 1 TCC = 1
1 AGC + 1 GCA + 2 CAG + 1 GCT + 0 CTG + 2 TGC = 7
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295317|gb|AE003561.1|AE003561 Drosophila melanogaster genomic scaffold 142000013386050 section 48 of 54, complete sequence
Position Repeat Coverage Repeat
20507 CTT * 7 19/21 CTT CTT CTT CTT CTT CAT CCT
52611 TCA * 7 19/21 TCA TCA TCA TCA TCA GCA GCA
55540 CAG * 11 30/33 CAG CAG CAG CAG CAG CAG CAA CAG CAA CAG CAA
55972 TGT * 11 30/33 TGT TAT TGT TGT TGT TGT TGT TGT TAT TAT TGT
68615 GCT * 8 22/24 GCT GCT GCT GCT GCT GCT GTT GCA
71931 GCA * 7 19/21 GCA ACA GCA ACA GCA GCA GCA
76095 GGA * 7 19/21 GGA GGA GGA GGA TGA GGA CGA
88663 TCG * 7 20/21 TCG TCG TCG CCG TCG TCG TCG
89513 TGT * 8 23/24 TGT TGT TGT TGT TGT TGT TGT TGC
95231 TGC * 7 19/21 TGC TGC TGC TGC TGC CGC TGT
95985 CAG * 7 19/21 CAG CAG CAG CAG CAG TGG CAG
111116 AAT * 11 30/33 AAT AAT AAT AAT AAT AAT AAA AAT AAT GAT AAG
111445 GTG * 7 19/21 GTG GTG GTG GGG GTG GTG GTC
118368 GCT * 8 22/24 GCT GCT GCT GCT GCT GCT GTT GCA
120826 GTC * 7 19/21 GTC GTC GTC GTC GTC GTC TGC
125551 CAC * 7 19/21 CAC CAC CGC CAC CGC CAC CAC
131103 GCT * 8 22/24 GCT GCT GCT GCT GCT GCT GGT GGT
131576 TTA * 8 22/24 TTA TTA TTA TTA TTA TTG TTG TTA
131705 TGC * 8 22/24 TGC TGC TGC TGC TGA TGT TGC TGC
131732 TGC * 7 19/21 TGC TGG TGT TGC TGC TGC TGC
131756 TGC * 8 22/24 TGC TGC TGC TGC TGT TGC TGC TGG
132991 ATG * 7 19/21 ATG ATG ATG ATG ATG GTG CTG
149588 TGC * 7 20/21 TGC TGC TAC TGC TGC TGC TGC
157448 CCT * 8 22/24 CCT CCT CCT CCT CCT CCT CCT CGA
163976 CAA * 7 19/21 CAA CAA CAA CAA CAA CAG CAG
171209 TCT * 8 22/24 TCT TCT TCT TCT TCT TCT TCC TCA
172818 CAG * 7 19/21 CAG CAC CAA CAG CAG CAG CAG
173008 AGC * 8 23/24 AGC AAC AGC AGC AGC AGC AGC AGC
173135 GCA * 8 22/24 GCA GCA GCA GAA GAA GCA GCA GCA
173165 GCA * 10 27/30 GCA GCA ACA GCA GCA GCA GCA GCA ACA GTA
173602 GCA * 7 19/21 GCA ACA GCA GCA GCA GCA ACA
173797 GCA * 7 19/21 GCA GCC GCA GCA ACA GCA GCA
174269 CAG * 7 19/21 CAG CAG CAG CAG CAG CAG GCG
174292 GCA * 7 19/21 GCA ACA GCA GCC GCA GCA GCA
174611 CAG * 7 19/21 CAG CAA CAG CAG CAG CAG CAA
174638 CAG * 8 23/24 CAG CAG CAG CAG CAG CAG CAG CAA
183220 GCA * 8 22/24 GCA GCA GCA GCA ACA ACA GCA GCA
183245 CAG * 7 19/21 CAG CAG CAG CAA CAA CAG CAG
184159 ACG * 10 28/30 ACG ACG AAG ACG ACG ACG ACG ACG ACG AGG
184626 CAG * 8 22/24 CAG CAG CAG CAG CAT CAT CAG CAG
185949 ACA * 7 19/21 ACA ACA ACA ACA ACA ACA GCC
185990 ACA * 7 19/21 ACA ACA ACA GCA ACA ACG ACA
186086 CAC * 8 22/24 CAC CAC CAC CAC CAT CAT CAC CAC
186168 ACA * 7 20/21 ACA ACA ACA ACA ACA ACA ATA
191100 CAG * 10 27/30 CAG CAG CAG CAA CAA CAG CAG CAG CAG CAA
191250 CAG * 12 33/36 CAG CAG CAG CAG CAG CAA CAA CAG CAG CAG CAA CAG
191618 GCA * 11 30/33 GCA GCA GCA ACA ACA GCA GCA GCA GCA GCA GCC
191829 CAG * 7 19/21 CAG CTG CAG CAG CAG CAA CAG
192470 ACA * 7 19/21 ACA ACA ACA ACA ACA GCA GCA
192663 CAG * 7 19/21 CAG CAG CAG CAT CAG CAG CAA
237087 CAT * 14 39/42 CAT CAT CAT CAT CAT CAT CAT TAT CAT CAT TAT CAT CAG CAT
240330 AGT * 11 30/33 AGT AGT GGT AGT AGT TGT AGT AGT AGT AGT ACT
-----------------------------------------------------------------------------------------
Total sequence length......................... 274307
Total number of repeats detected.............. 52
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 0 1 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGT 1 0 1 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 4 4 0 0 0 0 0 0 0 0 0 0 0
ACG 1 0 1 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 2 1 1 0 0 0 0 0 0 0 0 0 0
TGC 5 5 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
TCT 1 1 0 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTC 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 8 6 2 0 0 0 0 0 0 0 0 0 0
GCT 3 3 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 0 0 1 0 0 0 0 0 0 0 0 0
CAG 12 9 3 0 0 0 0 0 0 0 0 0 0
CAC 2 2 0 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 1 TCT = 2
0 AAC + 4 ACA + 1 CAA + 0 GTT + 0 TTG + 2 TGT = 7
1 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 1 TCA = 3
1 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 1 GGA + 0 GAG + 1 CCT + 0 CTC + 0 TCC = 2
1 AGC + 8 GCA + 12 CAG + 3 GCT + 0 CTG + 5 TGC = 29
1 ACG + 0 CGA + 0 GAC + 0 CGT + 1 GTC + 1 TCG = 3
0 ACC + 0 CCA + 2 CAC + 0 GGT + 1 GTG + 0 TGG = 3
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295278|gb|AE003560.1|AE003560 Drosophila melanogaster genomic scaffold 142000013386050 section 47 of 54, complete sequence
Position Repeat Coverage Repeat
45051 CCA * 7 20/21 CCA TCA CCA CCA CCA CCA CCA
46848 CAG * 9 25/27 CAG CAG CAG CAG CAG CAG CAG CAT CCG
47777 GCA * 8 22/24 GCA GCA GGA GCA CCA GCA GCA GCA
47812 AGC * 8 22/24 AGC ACC ACC AGC AGC AGC AGC AGC
47847 CAG * 8 24/24 CAG CAG CAG CAG CAG CAG CAG CAG
71601 GCA * 12 34/36 GCA GCA ACA GCA GCG GCA GCA GCA GCA GCA GCA GCA
94564 AAT * 8 22/24 AAT AAT ACT AAA AAT AAT AAT AAT
117964 CTC * 7 19/21 CTC CTC CTC CTC CTT CGC CTC
195060 AGT * 8 22/24 AGT AGT AGT ATT GGT AGT AGT AGT
258482 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAG AAC
258598 GCA * 7 19/21 GCA GCA CCA GCA GCA GCA ACA
258821 CAG * 8 22/24 CAG CAG CAA CAG CAG CAG CAG CAA
261610 TGC * 7 19/21 TGC AGC TGC TGT TGC TGC TGC
261646 TGC * 8 22/24 TGC TGC TGT TGA TGC TGC TGC TGC
261784 TGC * 9 25/27 TGC TGC TGC TGT TGT TGC TGC TGC TGC
261880 GAG * 8 22/24 GAG GAG GAG GAG GAG GTG GAG GCG
264722 GCT * 8 22/24 GCT GCT GCT GCC TCT GCT GCT GCT
279571 ATG * 9 26/27 ATG ATG ATG ATG ATG ATG ACG ATG ATG
-----------------------------------------------------------------------------------------
Total sequence length......................... 285495
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 3 3 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 3 2 1 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 4 4 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
1 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 1
1 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 1 GAG + 0 CCT + 1 CTC + 0 TCC = 2
1 AGC + 3 GCA + 4 CAG + 1 GCT + 0 CTG + 3 TGC = 12
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 1 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295229|gb|AE003559.1|AE003559 Drosophila melanogaster genomic scaffold 142000013386050 section 46 of 54, complete sequence
Position Repeat Coverage Repeat
28753 TGC * 7 19/21 TGC TGC TGT TGC TGT TGC TGC
28885 TGC * 7 19/21 TGC TGA TGC TGC TGC TGA TGC
29250 CTG * 7 19/21 CTG CTG CTG GTG CTG TTG CTG
29287 TGC * 7 20/21 TGC TGT TGC TGC TGC TGC TGC
65583 ATA * 7 19/21 ATA ATC ATA ATA GTA ATA ATA
96393 GGA * 7 19/21 GGA GTA GGA GGA GGA GGA GCA
122446 GGA * 10 27/30 GGA GGA AGC GGA GGA GGA GGA GGA GGA CGA
130092 GTT * 7 19/21 GTT GTT GTT GTT TTT CTT GTT
137954 CGG * 8 22/24 CGG CGG CGG CGG TGG TGG CGG CGG
138711 GCG * 9 25/27 GCG GCG GCG GCG GCG GCG GCT GCG TCG
156946 CCT * 8 22/24 CCT CCT CCT CCT CCT CCT CCT CTG
165700 AGC * 7 19/21 AGC AGC AGC AGG AGC AAC AGC
193809 GCA * 7 20/21 GCA GCA GCA GCA GCA ACA GCA
193879 CAA * 8 22/24 CAA CAG CAA CAA CAG CAA CAA CAA
202541 AGC * 7 19/21 AGC AGC AGC AGC AGC AGC CTC
230893 AAT * 7 19/21 AAT AAT AAT AAT AAC AAC AAT
259738 CTG * 7 19/21 CTG CTG CTG CTG ATG TTG CTG
-----------------------------------------------------------------------------------------
Total sequence length......................... 269454
Total number of repeats detected.............. 17
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 3 3 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 2 1 1 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 2 2 0 0 0 0 0 0 0 0 0 0 0
CGG 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 1 CAA + 1 GTT + 0 TTG + 0 TGT = 2
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 2 GGA + 0 GAG + 1 CCT + 0 CTC + 0 TCC = 3
2 AGC + 1 GCA + 0 CAG + 0 GCT + 2 CTG + 3 TGC = 8
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 1 GCG + 1 CGG + 0 GCC + 0 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295193|gb|AE003558.1|AE003558 Drosophila melanogaster genomic scaffold 142000013386050 section 45 of 54, complete sequence
Position Repeat Coverage Repeat
10587 TAT * 7 19/21 TAT TAT TAT TAA TAT TAT AAT
16368 ATG * 9 25/27 ATG ATG ATG ATG ATG ATG ATG ATG GGG
35059 ACA * 8 22/24 ACA ACA ACA ACA AGA GCA ACA ACA
98954 TGT * 7 19/21 TGT TTT TGT TGT TGT TGT TGC
120850 CAA * 7 19/21 CAA CAC CTA CAA CAA CAA CAA
128584 CTG * 12 33/36 CTG CTG CTG CTG CTG CTG CAG CTT CTG TTG CTG CTG
128794 CTG * 13 36/39 CTG CTG TTG CTG CTG CTG TTG CTG CTG CTG CTG CTG CTC
131337 GAT * 8 22/24 GAT GCT GAT AAT GAT GAT GAT GAT
150265 GTG * 7 19/21 GTG ATG GTG GTC GTG GTG GTG
156416 ATT * 7 19/21 ATT ATT ATT ATT ATT ATT GCT
161722 AAC * 7 19/21 AAC AAC AAC TAT AAC AAC AAC
188899 GGT * 8 23/24 GGT GGT GGT GGT GGC GGT GGT GGT
206442 GCT * 7 19/21 GCT GCT GCT GCT GCT GCA GTT
234562 GCT * 10 29/30 GCT GCT GCT GCT GCT GCT GCT GCT GCT GCC
235446 TCG * 8 22/24 TCG TCG TCG TCG TGG TCG TCG TCT
-----------------------------------------------------------------------------------------
Total sequence length......................... 273744
Total number of repeats detected.............. 15
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 2 1 1 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 2 0 1 1 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 1 ATT + 0 TTA + 1 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 1 ACA + 1 CAA + 0 GTT + 0 TTG + 1 TGT = 4
1 ATG + 0 TGA + 1 GAT + 0 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 2 GCT + 2 CTG + 0 TGC = 4
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 1 TCG = 1
0 ACC + 0 CCA + 0 CAC + 1 GGT + 1 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295172|gb|AE003557.1|AE003557 Drosophila melanogaster genomic scaffold 142000013386050 section 44 of 54, complete sequence
Position Repeat Coverage Repeat
4247 GTA * 9 25/27 GTA GTA GTG GTA GTG GTA GTA GTA GTA
10734 TGT * 13 36/39 TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGC TGT CGC
15794 GTC * 8 24/24 GTC GTC GTC GTC GTC GTC GTC GTC
49403 GAC * 7 19/21 GAC GAC GAC GAC GAC GGC GAG
83466 CAT * 7 19/21 CAT CAT CAT AAT CAT CAC CAT
91138 TCA * 7 20/21 TCA TCA TCA TCA TCA TCA TCG
95701 CAA * 7 19/21 CAA CAA CAA AAA CAA CAA CAT
101512 CTG * 8 23/24 CTG TTG CTG CTG CTG CTG CTG CTG
123289 AGG * 7 19/21 AGG AGG AGG AGG AGG CGA AGG
140227 ACA * 7 19/21 ACA GCA AGA ACA ACA ACA ACA
151068 CAT * 8 23/24 CAT CAT CAT CAT CAT CAT CGT CAT
159026 CTG * 7 21/21 CTG CTG CTG CTG CTG CTG CTG
161088 TGC * 10 27/30 TGC TGC TGC TGC TGC TGC TGC TGT TGT TGT
161118 TGT * 7 19/21 TGT TGT TGT GGT TGT TGT TGC
161145 TGG * 7 19/21 TGG TGG TGG TGA TGG TGG TGA
173422 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC CAC TGC
179044 AGC * 12 33/36 AGC AGC AAC AGC AGC AGC AGC AAC AGC AGC AGC TGC
180667 CAA * 9 25/27 CAA CAA CAA CAA TAA TAA CAA CAA CAA
181493 TGT * 7 20/21 TGT TGT TGT TGT TGT TGT AGT
181556 TTG * 16 45/48 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG AGC
202631 ACA * 9 25/27 ACA ACA ACA ACA ACA ACA ACA ACA TGA
219806 GCA * 7 19/21 GCA ACA GCA GCA GCA GCA ACA
220060 CAG * 8 22/24 CAG CAG CAG CAT CAA CAG CAG CAG
220137 GCA * 10 29/30 GCA GCA GCA GCA GCA GCA GCA ACA GCA GCA
220234 CAA * 7 19/21 CAA CAA CAA CAA CAA CAG CAG
220279 CAG * 7 19/21 CAG CAG CAG CAA CAG CAG CAC
220303 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAT CAT
220743 CAA * 7 19/21 CAA CAA TAA CAG CAA CAA CAA
224778 GCA * 7 19/21 GCA ACA GCA GCA GCA ACA GCA
224800 CAG * 11 30/33 CAG CAG CAG CAG CAG CAA CAC CAG CAG CAA CAG
225259 AAT * 7 19/21 AAT AAT AAT AAC AAT AAC AAT
225333 CAA * 10 27/30 CAA CAA CAA CAA CAA CAA CAG CAA TAA TAA
225510 CAA * 15 41/45 CAA CAA CAG CAA CAA CAA CAA CAA CAA CAC CAA CAA CAA TAA TAA
226842 CAA * 7 20/21 CAA CAA CAG CAA CAA CAA CAA
229222 CAA * 7 20/21 CAA CAA CAA CAA CAA CAC CAA
229362 AAC * 7 19/21 AAC AAC AAC AAC AAC AGC AGC
240454 GCA * 10 28/30 GCA GCA GCA GCA GCA GCA GCA GCA GCA TGA
259670 CAA * 11 30/33 CAA CAA CAA CAA CAA CAA TAA CCA CAA CAA CAG
284358 GCA * 7 19/21 GCA GCA ACA GCA GCA GCA TCA
284383 CAG * 7 19/21 CAG CAG CAG CAA CAT CAG CAG
285097 CAG * 8 22/24 CAG CAG CAA CAT CAG CAG CAG CAG
285136 CAG * 10 27/30 CAG CAG CAA CAG CAG CAG CAG CAA CAG CAA
285169 CAG * 7 19/21 CAG CAG CAG CAA CAA CAG CAG
285573 GCA * 10 27/30 GCA GCA GCA ACA GCA GCA GCA GCA ACA ACA
-----------------------------------------------------------------------------------------
Total sequence length......................... 286418
Total number of repeats detected.............. 44
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 0 1 0 0 0 0 0 0 0 0 0 0
ACA 2 2 0 0 0 0 0 0 0 0 0 0 0
TTG 1 0 0 0 1 0 0 0 0 0 0 0 0
TGT 3 2 0 1 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 1 1 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTA 1 1 0 0 0 0 0 0 0 0 0 0 0
GTC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 6 3 3 0 0 0 0 0 0 0 0 0 0
CAA 9 6 2 1 0 0 0 0 0 0 0 0 0
CAT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 8 6 2 0 0 0 0 0 0 0 0 0 0
CTG 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 2 ACA + 9 CAA + 0 GTT + 1 TTG + 3 TGT = 16
0 ATG + 0 TGA + 0 GAT + 2 CAT + 0 ATC + 1 TCA = 3
0 AGT + 1 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 1
1 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 1
1 AGC + 6 GCA + 8 CAG + 0 GCT + 2 CTG + 2 TGC = 19
0 ACG + 0 CGA + 1 GAC + 0 CGT + 1 GTC + 0 TCG = 2
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 1 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295117|gb|AE003556.1|AE003556 Drosophila melanogaster genomic scaffold 142000013386050 section 43 of 54, complete sequence
Position Repeat Coverage Repeat
5015 ATT * 7 19/21 ATT ATT ATA ATT ATT ATT TTT
7727 TGG * 7 19/21 TGG TGG TGC TGG TGG TGC TGG
11361 CCT * 7 19/21 CCT CCT CGT CCT CCT CCG CCT
11456 TCC * 7 19/21 TCC TCC TCC TCA TCA TCC TCC
58018 ATG * 10 27/30 ATG ATG ATG ATG ATG ATG ATG ATT ATA GTG
61489 GCA * 7 19/21 GCA GCA GTA GCA GCA GCA GGA
61510 GGA * 8 22/24 GGA GGG GGA GGA GGA GGA GGA GGT
74396 TGT * 7 19/21 TGT CGT TGT TGC TGT TGT TGT
77670 ACA * 7 19/21 ACA ACC ACA ACA ACA ACG ACA
82492 GCT * 8 22/24 GCT GAT GTT GCT GCT GCT GCT GCT
82867 AGG * 7 19/21 AGG AGC AGG AGA AGG AGG AGG
83740 GCT * 7 19/21 GCT CCT GCT ACT GCT GCT GCT
84756 TTG * 7 19/21 TTG TTA TTG TTG TTC TTG TTG
90092 CTA * 8 22/24 CTA CTA CTA TTA CTA CAA CTA CTA
91227 ATA * 8 22/24 ATA ATA TTA ATT ATA ATA ATA ATA
92715 AAT * 7 19/21 AAT AAT ATT AAT AAT AAT ATT
122081 AGC * 7 19/21 AGC AGC AGC AGC GGC AGC AGG
172550 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CAA
172724 AAC * 7 19/21 AAC AAC AGC AAC AAC AAC AGC
179965 TGC * 7 19/21 TGC TGC TGC TAC TGC CGC TGC
182854 CAA * 7 19/21 CAA CAA CAA CAA TAA CAA CCA
212984 TCC * 7 19/21 TCC TCC TCC TCC TCA TCT TCC
213545 ATT * 8 22/24 ATT ATA ATT ATT ATA ATT ATT ATT
231014 GTT * 8 22/24 GTT GTT GTG GTA GTT GTT GTT GTT
231041 GTG * 8 23/24 GTG GTG GTG GTG GTG GTG GTG GCG
-----------------------------------------------------------------------------------------
Total sequence length......................... 281146
Total number of repeats detected.............. 25
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 2 2 0 0 0 0 0 0 0 0 0 0 0
ATG 1 0 1 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCC 2 2 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTA 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 1 ATA + 0 TAA + 2 ATT + 0 TTA + 0 TAT = 4
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 1 ACA + 1 CAA + 1 GTT + 1 TTG + 1 TGT = 6
1 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 1 CTA + 0 TAC = 1
1 AGG + 1 GGA + 0 GAG + 1 CCT + 0 CTC + 2 TCC = 5
1 AGC + 1 GCA + 1 CAG + 2 GCT + 0 CTG + 1 TGC = 6
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 1 GTG + 1 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295064|gb|AE003555.1|AE003555 Drosophila melanogaster genomic scaffold 142000013386050 section 42 of 54, complete sequence
Position Repeat Coverage Repeat
32894 CTC * 8 23/24 CTC CTC CTC CTA CTC CTC CTC CTC
70570 CTT * 7 19/21 CTT CTT CTT CTT CTT CTT CAG
86964 GCT * 8 23/24 GCT GCT GCT GCT GCT GCT GCA GCT
100428 GGC * 7 19/21 GGC GGC GGC GGA GGG GGC GGC
124763 TAT * 7 19/21 TAT TAT TAT TAT TAT TTT TTT
138122 GAG * 8 22/24 GAG GAA GAG GAG GAG GAG GAG GAT
148611 TGC * 7 19/21 TGC TGC TGC TGC TGT TGC TGA
158833 CTC * 8 23/24 CTC CTC CTC CTC CTC CAC CTC CTC
159070 CAT * 8 23/24 CAT CAT CAT CGT CAT CAT CAT CAT
162964 TGA * 8 22/24 TGA GGA TGA TGA TGA TGA TGA CGA
163094 TGT * 7 19/21 TGT TGT TAT TGG TGT TGT TGT
163858 GAA * 7 20/21 GAA GAA GAA GAA GAA GAA GCA
164040 AAC * 9 25/27 AAC AAC AAC AAC AAC AAC AAT AAC AAA
164574 TTG * 7 19/21 TTG TTG TTG TTG CTG TTG CTG
173685 AAC * 7 19/21 AAC AAC AAC AAA ACC AAC AAC
177058 CAG * 7 19/21 CAG CAG CAG CAG CAT CAA CAG
177088 CAG * 8 22/24 CAG CAG CAG CAG CAA CAT CAG CAG
177147 GCA * 7 19/21 GCA GCA GCA GCA GCA ACA ACA
177196 CAA * 7 19/21 CAA CAT CAA CAA CAA CAG CAA
177220 CAG * 10 27/30 CAG CAG CAG CAG CAG CAG CAA CAA CAG CAT
182512 ACA * 7 19/21 ACA ACA ACA ACA ACA ACA GAA
185442 CTG * 7 20/21 CTG CTG CTG CTG GTG CTG CTG
185691 GAG * 7 19/21 GAG GAG GAG GAG GAT GTG GAG
189723 TTG * 7 19/21 TTG CTG CTG TTG TTG TTG TTG
189751 TGT * 7 19/21 TGT TCT CGT TGT TGT TGT TGT
201984 TGC * 10 27/30 TGC TGA TGC TGC TGC TGC TGC TGC TGC TTG
220457 AAT * 7 20/21 AAT AAT AAT AAT AAT AAT AAC
228961 CTG * 11 30/33 CTG CTG CTG ATG CTG CTG CTG CTG CTG CTC CTC
229754 TCA * 7 19/21 TCA TCA TCA TCA TCA TGA ACA
242660 ATT * 10 28/30 ATT ATT ATT ATT ATT ATC AGT ATT ATT ATT
243005 GCA * 8 22/24 GCA GCA GCA GCA CCA GCA ACA GCA
243030 CAG * 7 19/21 CAG CAG CAG CAA CAA CAG CAG
243187 TGC * 8 23/24 TGC TGC TGC TGC TGC TGC TGC TGT
245335 AGC * 18 50/54 AGC AGC AGC AAC AGC AGC CGC AGC AGC AGC AGC AGC AGC AGC AAC TGC AGC AGC
248679 ATG * 10 28/30 ATG ATG ATG ATG ATG ATG ATG ATG ATC ATT
252589 GCT * 7 20/21 GCT GCT GCT GCT GCT GCT GTT
-----------------------------------------------------------------------------------------
Total sequence length......................... 281936
Total number of repeats detected.............. 36
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 2 2 0 0 0 0 0 0 0 0 0 0 0
ATT 1 0 1 0 0 0 0 0 0 0 0 0 0
ATG 1 0 1 0 0 0 0 0 0 0 0 0 0
AGC 1 0 0 0 1 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 3 2 1 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 2 2 0 0 0 0 0 0 0 0 0 0 0
GGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 4 3 1 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 2 1 1 0 0 0 0 0 0 0 0 0 0
CTC 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 1 ATT + 0 TTA + 1 TAT = 3
0 AAG + 0 AGA + 1 GAA + 1 CTT + 0 TTC + 0 TCT = 2
2 AAC + 1 ACA + 1 CAA + 0 GTT + 2 TTG + 2 TGT = 8
1 ATG + 1 TGA + 0 GAT + 1 CAT + 0 ATC + 1 TCA = 4
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 2 GAG + 0 CCT + 2 CTC + 0 TCC = 4
1 AGC + 2 GCA + 4 CAG + 2 GCT + 2 CTG + 3 TGC = 14
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
1 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295028|gb|AE003554.1|AE003554 Drosophila melanogaster genomic scaffold 142000013386050 section 41 of 54, complete sequence
Position Repeat Coverage Repeat
12824 AAT * 8 22/24 AAT AAT AAT AAT AAT GAT AAT AGT
22041 TGC * 8 22/24 TGC TGC TGC AGC TGC CGC TGC TGC
22551 GAT * 10 27/30 GAT GAT GAT GAT GAT GAT TAT GAT GGT GGT
24254 GCA * 20 55/60 GCA GCA ACA GCA GCA GCA GCA ACA GCA GCA GCA GCA GCA GCT GCA ACA GCA ACA GCA GCA
60625 TTG * 8 22/24 TTG TTG TTG TTG TTG TTG TTC ATG
73901 GGT * 7 19/21 GGT GGT GCT GGT GGT GGT GGA
76313 TGA * 10 28/30 TGA TGA TGA TGA TGA TGA TGA TGG TGA TGG
80570 CTG * 7 20/21 CTG TTG CTG CTG CTG CTG CTG
105568 ATT * 7 19/21 ATT ATT ATT ATT ATT ATG ATA
115038 GGT * 7 19/21 GGT GGT GGT GGT GGC GGC GGT
125674 ATG * 7 21/21 ATG ATG ATG ATG ATG ATG ATG
135196 TCT * 7 19/21 TCT GCT TCT TCT TCT GCT TCT
158903 TCA * 7 19/21 TCA TCA TCA TCA CCA TCT TCA
164074 ATG * 7 19/21 ATG ATG ATA ATA ATG ATG ATG
186458 TGA * 12 33/36 TGA CGA TTA TGA TGA TGA TGA TGA TGA TGA TGG TGA
205865 ATT * 8 22/24 ATT ATT AGT ACT ATT ATT ATT ATT
224108 TGC * 10 28/30 TGC TGC TGC TGC GGC CGC TGC TGC TGC TGC
224148 TGC * 8 22/24 TGC TGC TGC TGC TGT TGG TGC TGC
237871 CAG * 7 19/21 CAG CAG CAG CAG CAG CAG TGG
249355 TCG * 8 22/24 TCG TCG TCG TCG TCG TCG TCG TTT
256285 GCA * 8 22/24 GCA GCA GCA ACA GCA GCC GCA GCA
256381 GCA * 7 20/21 GCA GGA GCA GCA GCA GCA GCA
258882 GCT * 8 22/24 GCT GCT GCT GTT GCT GCT GGT GCT
261585 CTG * 8 22/24 CTG CTG TTG CTG CTG CTG TTG CTG
265147 TTG * 8 22/24 TTG TTT TTG TTG TAG TTG TTG TTG
276087 GCA * 7 19/21 GCA GCA ACA GCA GCG GCA GCA
-----------------------------------------------------------------------------------------
Total sequence length......................... 285729
Total number of repeats detected.............. 26
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 2 2 0 0 0 0 0 0 0 0 0 0 0
ATG 2 2 0 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGA 2 0 2 0 0 0 0 0 0 0 0 0 0
TGC 3 2 1 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
TCT 1 1 0 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 0 1 0 0 0 0 0 0 0 0 0 0
GGT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCA 4 3 0 0 0 1 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 2 ATT + 0 TTA + 0 TAT = 3
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 1 TCT = 1
0 AAC + 0 ACA + 0 CAA + 0 GTT + 2 TTG + 0 TGT = 2
2 ATG + 2 TGA + 1 GAT + 0 CAT + 0 ATC + 1 TCA = 6
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 4 GCA + 1 CAG + 1 GCT + 2 CTG + 3 TGC = 11
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 1 TCG = 1
0 ACC + 0 CCA + 0 CAC + 2 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7294982|gb|AE003553.1|AE003553 Drosophila melanogaster genomic scaffold 142000013386050 section 40 of 54, complete sequence
Position Repeat Coverage Repeat
1548 CAA * 8 22/24 CAA CCA CAA CAA CAA CAA CAA CCA
1800 AAC * 7 19/21 AAC AAC AAC AAC AAC AAC AGG
3030 TGA * 7 19/21 TGA TGA CGA TGA TCA TGA TGA
9276 GCT * 7 19/21 GCT GCT GCT GCT GCT CCT TCT
9484 TAA * 7 20/21 TAA TAA TAA TAA TTA TAA TAA
12481 AGC * 8 22/24 AGC AGC ACA AGC AGC AGC AGC AGC
12887 CAA * 7 19/21 CAA CCA CAA GAA CAA CAA CAA
21356 AAC * 10 27/30 AAC TAC AAC AAC AAC AAC AAC TAC AAC TAC
23595 CAA * 8 23/24 CAA CAA CAA CAA CAA CAA CAA CAT
24738 CTA * 8 22/24 CTA CTA CTA CTA CTA CAA CAA CTA
29080 CAA * 7 19/21 CAA CAA CAA CAA CTA CTA CAA
30627 CAA * 11 30/33 CAA CAA CAA CAA CAA CAA CAA CTA CAA CAA CTG
30764 ACA * 13 36/39 ACA ACA ACA ACA ACA ACA ACC ACA ACT ACA ACA ACA ACC
32185 CAA * 8 22/24 CAA CAA CAA CAA CAA CAA CAG CTA
41185 ACA * 7 19/21 ACA ACA ACA ACA ACA ACA AAT
64884 AAC * 8 23/24 AAC AAC AAC AAC AAC AAC AAA AAC
70511 TGC * 10 27/30 TGC TGC TGC TGC TGC TGC TTC TGC TGC TTT
70708 GAT * 11 30/33 GAT GAT GAT GAT GAT GAT GAA CAT GAT GAT GTT
75229 TGC * 8 22/24 TGC TGC TGC GGC TGC TGC TGC TGT
76809 TAC * 10 27/30 TAC CAC TAC TAC TAC TAC TAC TAC TAC CAA
77685 TAA * 9 25/27 TAA TAA TAA TAA TAA TAA TAA TAA TCC
81880 CAC * 7 20/21 CAC CAC CAC CAC CAC CAC CAA
82052 AAC * 8 22/24 AAC TGC AAC AAC AAC AAC AAC AAC
82109 ACA * 8 22/24 ACA ACA ACA ACA ACT ACA ACA ATA
82663 CTA * 7 20/21 CTA CTA CTA CTA CTA CTA CCA
82685 AAC * 8 22/24 AAC AAG AAC AAC AAC AAC AAC AAA
99639 GGT * 7 19/21 GGT GAC GGT GGT GGT GGT GGT
119944 ACA * 8 22/24 ACA ACA TCA ACA GCA ACA ACA ACA
127727 ATG * 11 31/33 ATG ATG ATG GCG ATG ATG ATG ATG ATG ATG ATG
159602 CGG * 7 19/21 CGG CGG CGG CGG CGG CGT CTG
160847 GGA * 8 22/24 GGA GGA GGA GGA GGA GGT GGA TGA
165192 AGG * 10 27/30 AGG AGG AGG AGG AGG ATG AGG AGG CGG TGG
185213 TAT * 9 26/27 TAT TAT TAT TAT TAT TAT TAT TAT TTT
196834 CAG * 9 25/27 CAG CAG TCG CAG CAG CAG CAG CAG CAG
243535 GCA * 8 22/24 GCA GCA GCA GCA GCA GCA ACA ACA
244140 CCA * 7 21/21 CCA CCA CCA CCA CCA CCA CCA
262927 ATG * 10 27/30 ATG ATG ATT ATG ATG ATG ATG ACG ATG TTG
-----------------------------------------------------------------------------------------
Total sequence length......................... 287145
Total number of repeats detected.............. 37
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 5 4 1 0 0 0 0 0 0 0 0 0 0
ATG 2 0 2 0 0 0 0 0 0 0 0 0 0
AGG 1 0 1 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 4 3 0 1 0 0 0 0 0 0 0 0 0
TAA 2 2 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TAC 1 0 1 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 1 1 0 0 0 0 0 0 0 0 0 0
GAT 1 0 1 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 6 5 1 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTA 2 2 0 0 0 0 0 0 0 0 0 0 0
CGG 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 2 TAA + 0 ATT + 0 TTA + 1 TAT = 3
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
5 AAC + 4 ACA + 6 CAA + 0 GTT + 0 TTG + 0 TGT = 15
2 ATG + 1 TGA + 1 GAT + 0 CAT + 0 ATC + 0 TCA = 4
0 AGT + 0 GTA + 0 TAG + 0 ACT + 2 CTA + 1 TAC = 3
1 AGG + 1 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 2
1 AGC + 1 GCA + 1 CAG + 1 GCT + 0 CTG + 2 TGC = 6
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 1 CCA + 1 CAC + 1 GGT + 0 GTG + 0 TGG = 3
0 GGC + 0 GCG + 1 CGG + 0 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7294927|gb|AE003552.1|AE003552 Drosophila melanogaster genomic scaffold 142000013386050 section 39 of 54, complete sequence
Position Repeat Coverage Repeat
3816 TGC * 8 22/24 TGC TGT TGT TGC TGC TGC TGC TGC
5508 TGT * 7 19/21 TGT TGT TGT TGC TGT TGT TGC
5706 GCT * 7 19/21 GCT GCT GAT GCG GCT GCT GCT
5863 TGT * 7 19/21 TGT TGT TGG TGA TGT TGT TGT
6560 GAT * 9 25/27 GAT GGT GAT GAC GAT GAT GAT GAT GAT
13414 TGT * 7 19/21 TGT TGT TGT TGC TGC TGT TGT
14071 TTA * 7 19/21 TTA TTA TTA TTA TTA TTA CTT
22273 GGA * 8 22/24 GGA GGA TGA GGA CGA GGA GGA GGA
35223 GCC * 8 22/24 GCC GCC AGC GCC GCC GCC GCC GCC
35249 CAA * 7 19/21 CAA CAA CAA TAA CAA CAG CAA
35865 CAG * 8 23/24 CAG CAG CAG CAG CAA CAG CAG CAG
39731 GTT * 8 22/24 GTT GTT GTC GTT GTT GTT GTT GTG
46475 TGT * 8 22/24 TGT TGT TGT TGT TGC TGG TGT TGT
59894 GGT * 7 20/21 GGT GGT GGT GGT GGT GGT GGC
60411 CAG * 9 25/27 CAG CAG CAG CAG CAG CAG TAT CAG CAG
60720 CAG * 7 20/21 CAG CAG CAG CAG CAG CAT CAG
63562 TGC * 8 22/24 TGC TGC TGC TGC TGC TGT TGA TGC
67948 GCA * 7 19/21 GCA GCA GCG CCA GCA GCA GCA
70474 CAA * 8 23/24 CAA CAA CAA CAA CAA CAA CAA AAA
89137 CAG * 7 19/21 CAG CAG CAG CAA GAG CAG CAG
95435 TGT * 8 22/24 TGT TGT TGG TGT TGT TGT TGT TTT
97299 GCT * 7 19/21 GCT GCT GCT GCC GCT GCT GTT
147997 GTT * 12 34/36 GTT GTT GTT GTT GTT GTT CTT GTT GTT GCT GTT GTT
164168 GCA * 8 22/24 GCA GCA GCA GCA GCA GCA ACA TCA
184441 AGT * 8 23/24 AGT AGT AGT AGT AGT AGT TGT AGT
198521 AGC * 7 19/21 AGC AGC AAC AAC AGC AGC AGC
198577 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CAA
218312 GAG * 7 19/21 GAG CAG GAG GAG GAG GAT GAG
219701 GCA * 9 25/27 GCA GCA GCA GCA GCA GCA ACA GCA ACA
225405 AAC * 7 19/21 AAC AAC AAC AGC AAC AAT AAC
234038 GAT * 9 25/27 GAT GAT GAT GAT GAT GAT GTT GAT GGT
250476 TGC * 11 30/33 TGC TGC TAC TGC TGC TGC TGC TGC TGC TTC TGG
253299 CTG * 9 25/27 CTG CTG CTG GCG CTG CTG CTG CTG CTG
253468 TTG * 7 19/21 TTG TTG TTG TTG TTT TTG TTT
280795 AGC * 7 19/21 AGC AGC AGG AGC AGC AGG AGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 286784
Total number of repeats detected.............. 35
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 5 5 0 0 0 0 0 0 0 0 0 0 0
TGC 3 2 1 0 0 0 0 0 0 0 0 0 0
GAT 2 2 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 2 1 1 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 3 3 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 5 5 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 2 CAA + 2 GTT + 1 TTG + 5 TGT = 11
0 ATG + 0 TGA + 2 GAT + 0 CAT + 0 ATC + 0 TCA = 2
1 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 1 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 2
2 AGC + 3 GCA + 5 CAG + 2 GCT + 1 CTG + 3 TGC = 16
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 1 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7294877|gb|AE003551.1|AE003551 Drosophila melanogaster genomic scaffold 142000013386050 section 38 of 54, complete sequence
Position Repeat Coverage Repeat
13264 AAC * 8 22/24 AAC AAC ATC AAC AAC AAC AAT AAC
23779 GGT * 7 19/21 GGT GGT GGA GGT GGA GGT GGT
33713 TCT * 7 19/21 TCT TCT TCT CCT TCT CCT TCT
35319 TGC * 7 19/21 TGC TGC TGC TGC TGA TGG TGC
52983 TAA * 7 20/21 TAA TAA TAA TAA TAA TAA TAT
53576 CCG * 7 19/21 CCG CTG CAG CCG CCG CCG CCG
53749 TGC * 10 27/30 TGC TGC TGC TGC TGC TGC TGG AGC TGC TTC
53818 TGC * 8 22/24 TGC TGC TGC TGC TGA TGT TGC TGC
53872 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC TGT TGG
54457 TGC * 7 19/21 TGC TGG TGC TGT TGC TGC TGC
56990 CCT * 7 19/21 CCT CTT CCT CCT CCT CCT GCT
57975 GTT * 7 19/21 GTT ATT GTT GTT GTT GTT GCT
91627 CAG * 7 19/21 CAG CAA CAG CAG CAG CAG CAA
91669 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CAA
112537 TTA * 7 19/21 TTA TTA TTT TTA TTA TTA TCA
118885 GCA * 8 22/24 GCA GGA ACA GCA GCA GCA GCA GCA
169758 CTG * 11 30/33 CTG CTG CTG TTG TTG CTG CTG CTG CTG CAG CTG
169888 TGC * 14 38/42 TGC TGC TGC TGC TGC TGC TGT TGT TGC TGC TGC TGC TGC AGA
179125 TTA * 7 19/21 TTA TTA TTA TTA TCA TTT TTA
208315 AAT * 7 19/21 AAT AAT AAC AAT AAT AAC AAT
212124 TTA * 7 20/21 TTA TTA TTA TTA TTA TTA TTT
243047 CAT * 7 19/21 CAT CAT CAT CAT CAT CAG CAG
253783 TTG * 8 23/24 TTG TTG TAG TTG TTG TTG TTG TTG
279978 GCT * 7 20/21 GCT GCT GCT GCG GCT GCT GCT
285517 ATT * 7 19/21 ATT ATT ATT ATT CGT ATT ATT
-----------------------------------------------------------------------------------------
Total sequence length......................... 285978
Total number of repeats detected.............. 25
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 3 3 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 6 4 1 1 0 0 0 0 0 0 0 0 0
TCT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CTG 1 0 1 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 1 TAA + 1 ATT + 3 TTA + 0 TAT = 6
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 1 TCT = 1
1 AAC + 0 ACA + 0 CAA + 1 GTT + 1 TTG + 0 TGT = 3
0 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 1 CCT + 0 CTC + 0 TCC = 1
0 AGC + 1 GCA + 2 CAG + 1 GCT + 1 CTG + 6 TGC = 11
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 1 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 1 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7294844|gb|AE003550.1|AE003550 Drosophila melanogaster genomic scaffold 142000013386050 section 37 of 54, complete sequence
Position Repeat Coverage Repeat
33186 TGT * 7 19/21 TGT TGT TGT TGC TGT TAT TGT
45333 AGC * 11 30/33 AGC AGC ATC AGC AGC AAC AGC AGC AGC AGC ATC
63702 TCA * 10 27/30 TCA TCA CCA TCA TCA CCA TCA TCA TCA TCG
102069 AAT * 10 27/30 AAT AAT AAT ATT AAT AAT AAT AAT AAT ATC
103437 TAG * 8 22/24 TAG TAG TAG TAG TAG CAG TAG TAT
112345 CTG * 8 22/24 CTG CTG CTG CTG CTG CTT CTA CTG
161924 CAA * 7 19/21 CAA CAA CAA CAA CAA CAA ATA
176606 AAG * 10 28/30 AAG AAG AAA AAG AAG AAG GAG AAG AAG AAG
178598 TGC * 7 19/21 TGC TGT TGC TGC TGC TGC TGT
178625 TGC * 14 39/42 TGC TGC TGC TGC TGC TGC TGC TGT TGA TGC TGC TGC TGC TGA
178811 CTG * 9 25/27 CTG CTG ATG TTG CTG CTG CTG CTG CTG
180179 TAT * 7 19/21 TAT CAT TAT TAT TAT GAT TAT
185176 TGA * 8 23/24 TGA CGA TGA TGA TGA TGA TGA TGA
192889 TCA * 8 22/24 TCA TCA TCA TCA TCG TCG TCA TCA
205089 GTT * 8 22/24 GTT GTT GTT CTT GTT GTT GTT GTG
211269 TTG * 7 19/21 TTG TAG TTG TTA TTG TTG TTG
220455 CAG * 7 19/21 CAG CAG CAT CAC CAG CAG CAG
220482 CAG * 11 30/33 CAG CAG CAA CAG CAA CAG CAG CAG CAG CAG CAA
224000 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CAA
224024 CAG * 11 30/33 CAG CAG CAA CAG CAG CAG CAA CAG CAG CAG CAA
224063 CAG * 7 20/21 CAG CAG CAG CAG CAG CAG CAA
224153 CAG * 18 50/54 CAG CAG CAG CAG CAA CAG CAG CAG CAG CAA CAA CAG CAG CAG CAG CAG CAA CAG
226234 GAC * 8 22/24 GAC GAC GAC GAT GAC GAC GAG GAC
228403 TGT * 8 22/24 TGT TGT TGT TGT TGT TGT TCT TGG
228925 CTG * 11 30/33 CTG CTG CTG CTG CTG TTG TTG CTG CTG CTG CAG
229104 GCT * 9 25/27 GCT GCT GCT GCT GCT GCT GCG GCT GGT
229195 CTG * 8 22/24 CTG CTG CTG CTG CTG TTG CTG TTG
230312 GCT * 11 30/33 GCT GCT GTT GCT GCT GTT GCT GCT GCT GCT CCT
231256 TGC * 10 28/30 TGC TGC TGC TGC TGT TGC TGC TGC GGC TGC
269408 CAG * 11 31/33 CAG GAG CAG AAG CAG CAG CAG CAG CAG CAG CAG
284936 AAT * 7 19/21 AAT AAT AGT CAT AAT AAT AAT
297696 TTG * 7 19/21 TTG TTG TTG TTG CTA TTG TTG
-----------------------------------------------------------------------------------------
Total sequence length......................... 298675
Total number of repeats detected.............. 32
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 2 1 1 0 0 0 0 0 0 0 0 0 0
AAG 1 0 1 0 0 0 0 0 0 0 0 0 0
AGC 1 0 1 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TAG 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 3 1 1 1 0 0 0 0 0 0 0 0 0
TCA 2 1 1 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 2 1 1 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 7 3 3 0 1 0 0 0 0 0 0 0 0
CTG 4 3 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
2 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 3
1 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 1
0 AAC + 0 ACA + 1 CAA + 1 GTT + 2 TTG + 2 TGT = 6
0 ATG + 1 TGA + 0 GAT + 0 CAT + 0 ATC + 2 TCA = 3
0 AGT + 0 GTA + 1 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 0 GCA + 7 CAG + 2 GCT + 4 CTG + 3 TGC = 17
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7294827|gb|AE003549.1|AE003549 Drosophila melanogaster genomic scaffold 142000013386050 section 36 of 54, complete sequence
Position Repeat Coverage Repeat
8011 AGC * 8 24/24 AGC AGC AGC AGC AGC AGC AGC AGC
16606 GAT * 9 25/27 GAT GAT GAT GAT GAT GGT GAT GAT GAA
21592 CAT * 7 19/21 CAT CAT CAT TAT CAA CAT CAT
34994 TAA * 8 22/24 TAA AAA AAA TAA TAA TAA TAA TAA
47122 CCT * 7 19/21 CCT GCT CCT CCT CCT CCT CCA
47291 GCT * 7 19/21 GCT GCT GCT GCT GCT GCT GGA
58158 TGC * 10 28/30 TGC TGC TGC TGC TGC TGC TGC TTC TGC TGT
71395 TGC * 8 22/24 TGC TGC TGC TCC TGA TGC TGC TGC
83431 AAC * 7 20/21 AAC AAC AAG AAC AAC AAC AAC
120917 TCA * 11 31/33 TCA TCA CCA TCA TCA TCA TCG TCA TCA TCA TCA
128673 GCT * 7 19/21 GCT GCT GCT GTT GTT GCT GCT
164320 AAG * 10 28/30 AAG AAG AAG AAG AAG AAG AAG ACG AAG AAT
165585 CAG * 10 27/30 CAG CAG CAG CAG CGG CAG CGG CAG CAG CAA
165648 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAA CAA
165996 TGC * 7 19/21 TGC TGC TGT TGC TGT TGC TGC
167122 GAT * 8 22/24 GAT GAT GAA GAT GAG GAT GAT GAT
167779 GAT * 10 28/30 GAT GAT GAT GAT GAT GAT GAT ATT GAT GAT
168053 AAC * 7 19/21 AAC AAC AAC AAC CGC AAC AAC
168581 GAT * 8 22/24 GAT GAT GAT GAT GAT GAA GAA GAT
241107 ATG * 7 20/21 ATG ATG ATG ATG ATG ATG TTG
278747 TTC * 7 19/21 TTC TTC TTC TTC GTC TTC TTG
290831 GTT * 8 22/24 GTT GCT GTT GTC GTT GTT GTT GTT
-----------------------------------------------------------------------------------------
Total sequence length......................... 300477
Total number of repeats detected.............. 22
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAG 1 0 1 0 0 0 0 0 0 0 0 0 0
AAC 2 2 0 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 3 2 1 0 0 0 0 0 0 0 0 0 0
TCA 1 0 1 0 0 0 0 0 0 0 0 0 0
GAT 4 3 1 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 1 1 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 0 ATT + 0 TTA + 0 TAT = 1
1 AAG + 0 AGA + 0 GAA + 0 CTT + 1 TTC + 0 TCT = 2
2 AAC + 0 ACA + 0 CAA + 1 GTT + 0 TTG + 0 TGT = 3
1 ATG + 0 TGA + 4 GAT + 1 CAT + 0 ATC + 1 TCA = 7
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 1 CCT + 0 CTC + 0 TCC = 1
1 AGC + 0 GCA + 2 CAG + 2 GCT + 0 CTG + 3 TGC = 8
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7294819|gb|AE003548.1|AE003548 Drosophila melanogaster genomic scaffold 142000013386050 section 35 of 54, complete sequence
Position Repeat Coverage Repeat
21442 AGC * 8 22/24 AGC AGC AGC CGC AGC AGC AGC GGC
21517 GGC * 7 19/21 GGC GGC GGC GGC GGC AGC AGC
21737 TGC * 7 19/21 TGC TGT TGT TGC TGC TGC TGC
21811 CTG * 10 27/30 CTG TTG TTG CTG CTG CTG CTG CTG CTG GTG
21892 CTG * 8 23/24 CTG CTG CTG CTG CTG CTG CTG TTG
29668 ATC * 9 25/27 ATC ATT ATC ATT ATC ATC ATC ATC ATC
30526 GTT * 7 19/21 GTT GTA GTT GTT GTT GTT GGT
33334 GCC * 10 28/30 GCC GCC GCC TCC TCC GCC GCC GCC GCC GCC
38705 CTG * 7 19/21 CTG CTG CTG CTG CTG TTG TTG
38727 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC TGT TGT
44311 GAT * 7 19/21 GAT GAT CAT GAC GAT GAT GAT
49445 ATG * 8 22/24 ATG ATG ATG ATG ATG ATG GTA ATG
54957 CAA * 7 19/21 CAA TAA CAA GAA CAA CAA CAA
70901 ATC * 8 22/24 ATC CTA ATC ATC ATC ATC ATC ATC
71187 GCT * 7 19/21 GCT GGT ACT GCT GCT GCT GCT
75738 TTG * 10 27/30 TTG TTG CTG TTG TTG TTG TTG TTG ATG ATG
80350 CTG * 7 19/21 CTG CCA CTG CTG CTG CTG CTG
92105 CAG * 9 25/27 CAG CAG CAG CAG CAG CAG CAG CAG GCG
97895 TGT * 8 23/24 TGT TGT TGT TAT TGT TGT TGT TGT
97922 TGT * 10 27/30 TGT TGT TGT TGT TGT TGT TGT TGG TGG TGG
121464 AGC * 8 22/24 AGC AGC AGC ATA AGC AGC AGC AGC
146535 GAG * 9 25/27 GAG GAG GAG GAG GAG GAG GAG AAG GAT
150518 CAG * 7 19/21 CAG CAG CAG CAG CAA CTG CAG
152832 TTG * 7 20/21 TTG TTG TTG TTG TTG TTG TAG
162576 TGT * 8 22/24 TGT TGT TGT TGT TGC TGT TGC TGT
177667 TGT * 7 19/21 TGT TGT TGT TTC TGT TGT TGT
177721 TGT * 8 22/24 TGT TGT TGC TGC TGT TGT TGT TGT
200690 CAT * 10 28/30 CAT CAT CAT CAT CAT CAT CAA CAT CGT CAT
202501 TGA * 10 27/30 TGA TGA TGA TGA TCA TAA TGA TGA TGA GGA
203056 ACA * 7 19/21 ACA GCA TCA ACA ACA ACA ACA
208320 ACA * 7 19/21 ACA ACA AGA ACA ACA ACA GCA
218204 GCA * 7 20/21 GCA GCA ACA GCA GCA GCA GCA
218592 TGC * 8 22/24 TGC TGC TGC TGC TGC TGG TGC GGC
220833 TGT * 10 27/30 TGT TGT TGT TGT TGT TTT TGT TGT TGC TGG
221211 CAA * 11 30/33 CAA CAA CCA CAA CAG CAA CAA CAA CAA AAA CAA
242044 TGA * 7 19/21 TGA TGA TGA TGA TGA CGA CGA
-----------------------------------------------------------------------------------------
Total sequence length......................... 244249
Total number of repeats detected.............. 36
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 2 2 0 0 0 0 0 0 0 0 0 0 0
AGC 2 2 0 0 0 0 0 0 0 0 0 0 0
ACA 2 2 0 0 0 0 0 0 0 0 0 0 0
TTG 2 1 1 0 0 0 0 0 0 0 0 0 0
TGA 2 1 1 0 0 0 0 0 0 0 0 0 0
TGT 6 4 2 0 0 0 0 0 0 0 0 0 0
TGC 3 3 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCC 1 0 1 0 0 0 0 0 0 0 0 0 0
CAA 2 1 1 0 0 0 0 0 0 0 0 0 0
CAT 1 0 1 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CTG 4 3 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 2 ACA + 2 CAA + 1 GTT + 2 TTG + 6 TGT = 13
1 ATG + 2 TGA + 1 GAT + 1 CAT + 2 ATC + 0 TCA = 7
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 1
2 AGC + 1 GCA + 2 CAG + 1 GCT + 4 CTG + 3 TGC = 13
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
1 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7294792|gb|AE003547.1|AE003547 Drosophila melanogaster genomic scaffold 142000013386050 section 34 of 54, complete sequence
Position Repeat Coverage Repeat
1609 ATA * 8 22/24 ATA ATA GTA ATA ATA AGA ATA ATA
14059 GCT * 7 19/21 GCT GCT CCT GCT GCT GCT GTT
15191 CTG * 7 19/21 CTG CTG CTG CTG CTG CTG GGG
16655 GCT * 8 22/24 GCT GCT GCT GTT GCT GCT GTT GCT
17645 TGC * 12 33/36 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGT TGG TGG
17913 GCT * 14 38/42 GCT GCT GCT GTT GCT GCT GCT GCT GTT GCT GCT GTT GCT GGT
17992 CTG * 9 25/27 CTG TTG CTG CTG CTG CTG TTG CTG CTG
29225 GTT * 7 19/21 GTT GTA GTT GCT GTT GTT GTT
29620 TGT * 7 19/21 TGT TGT TGC TGC TGT TGT TGT
32439 TGC * 10 27/30 TGC TGA TGT TGC TGC TGC TGC TGC TGC TGT
32497 TGC * 7 19/21 TGC TGC CGC TGC TGC TGC GGC
33498 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CAC
33640 CAG * 8 23/24 CAG CAG CAG CAG CAA CAG CAG CAG
33729 GCA * 10 27/30 GCA GCA GCA GCA GCA GCA GCA ACA TCA GCG
34098 CTG * 7 19/21 CTG CTG CTG CTG CTG TTG TTG
34122 TTG * 7 19/21 TTG CTG TTG TTG TTG TTG CTG
38002 CAA * 7 20/21 CAA CAC CAA CAA CAA CAA CAA
38290 ACA * 8 23/24 ACA GCA ACA ACA ACA ACA ACA ACA
63724 TTG * 8 22/24 TTG TTG TTG GTG TTG TTG TTG TTC
66784 TTG * 7 21/21 TTG TTG TTG TTG TTG TTG TTG
82515 CAT * 7 20/21 CAT CAT CAT CAC CAT CAT CAT
86812 GCC * 7 19/21 GCC ACC GCC ACC GCC GCC GCC
86888 CCA * 7 19/21 CCA CCA CCA CCA CCA CCT CCT
93924 TGT * 8 22/24 TGT TGT TGT TGT TGT TGT TTT CGT
94337 GTT * 7 20/21 GTT GTT GTT GTT GTT GTT GTC
100046 TTG * 8 22/24 TTG TTG TTG TTG TTG TTG TTG TCT
102381 ACA * 9 25/27 ACA ACA ACA ACA ACA ACA ACG TCA ACA
102593 TTA * 7 19/21 TTA TTA TTA TTA TTA TTG TTG
108684 TGC * 7 21/21 TGC TGC TGC TGC TGC TGC TGC
110192 CTG * 8 22/24 CTG CTG CTG CTG CTT CTG CTA CTG
115986 TTA * 8 22/24 TTA TTA TTA TTA TTA TTA TTT TTC
118917 TCA * 7 19/21 TCA TCA TTA TCA TCA TCA TCC
120127 GAA * 10 28/30 GAA GAA GAA GAA GAA GAA GAA GAG GGA GAA
121764 ACA * 10 27/30 ACA GCA ACA ACA ACA ACA ACA ACA AGA AAA
122275 TGT * 7 19/21 TGT TGT CGT TGT TGT TGT TGG
133291 AAC * 12 34/36 AAC AAC AAC AAC AAC AAT AAC AGC AAC AAC AAC AAC
147760 CAA * 7 19/21 CAA CAG CGA CAA CAA CAA CAA
149149 TTG * 8 23/24 TTG TTG TTG TTG TTG TTT TTG TTG
150725 AAC * 7 19/21 AAC AAT AAC ACC AAC AAC AAC
150823 AAC * 8 22/24 AAC AAC AAC AAC AAC TAC AGC AAC
151894 TGT * 8 22/24 TGT TGT TGT TGT TAT TGT TGC TGT
161010 CTC * 7 19/21 CTC CTG TTC CTC CTC CTC CTC
165688 ACA * 7 19/21 ACA GCA ACA ACA ACA ACA ATA
166603 AGC * 7 19/21 AGC ATC ACC AGC AGC AGC AGC
183174 AAC * 7 19/21 AAC AGC AAC AAC AGC AAC AAC
188616 TGC * 7 19/21 TGC TCC TGC TCC TGC TGC TGC
188650 CTG * 7 19/21 CTG CTG CTG CTC CAG CTG CTG
188697 ATG * 21 57/63 ATG ATG TTG ATG ATG ATG ATG ATG ATG ATG CTG ATG ATG CTG ATG ATG CTG ATG ATG CTG GTG
196962 CTG * 8 23/24 CTG CTA CTG CTG CTG CTG CTG CTG
202840 TGT * 7 20/21 TGT TGT TGT TGT TAT TGT TGT
202891 TGT * 7 19/21 TGT TGT TGT TGT TGT TGG TGG
204332 AAC * 7 19/21 AAC CAC AAC AAA AAC AAC AAC
206121 CAA * 7 19/21 CAA CAG CAA CAG CAA CAA CAA
209052 TGT * 7 19/21 TGT TGT TGT TGC TTT TGT TGT
217852 CAG * 8 22/24 CAG CAG CAA CAG CAG CAG GAG CAG
218382 TTG * 10 27/30 TTG TTG TTG TTG TTC TTG TTG TTG TTC CTG
219335 TTG * 7 19/21 TTG TTG TTG CTG TTG CTG TTG
243142 ATG * 8 22/24 ATG GCG ATG ATG ATG ATG ATG ATG
255955 CCT * 7 19/21 CCT CAT CCT CGT CCT CCT CCT
-----------------------------------------------------------------------------------------
Total sequence length......................... 281396
Total number of repeats detected.............. 59
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 5 4 1 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 2 1 0 0 0 1 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 4 3 1 0 0 0 0 0 0 0 0 0 0
TTA 2 2 0 0 0 0 0 0 0 0 0 0 0
TTG 7 6 1 0 0 0 0 0 0 0 0 0 0
TGT 7 7 0 0 0 0 0 0 0 0 0 0 0
TGC 5 3 2 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAA 1 0 1 0 0 0 0 0 0 0 0 0 0
GTT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCA 1 0 1 0 0 0 0 0 0 0 0 0 0
GCT 3 2 0 1 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 3 3 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 3 3 0 0 0 0 0 0 0 0 0 0 0
CTG 6 6 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 2 TTA + 0 TAT = 3
0 AAG + 0 AGA + 1 GAA + 0 CTT + 0 TTC + 0 TCT = 1
5 AAC + 4 ACA + 3 CAA + 2 GTT + 7 TTG + 7 TGT = 28
2 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 1 TCA = 4
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 1 CCT + 1 CTC + 0 TCC = 2
1 AGC + 1 GCA + 3 CAG + 3 GCT + 6 CTG + 5 TGC = 19
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 1 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7294749|gb|AE003546.1|AE003546 Drosophila melanogaster genomic scaffold 142000013386050 section 33 of 54, complete sequence
Position Repeat Coverage Repeat
7457 CTG * 9 25/27 CTG CTG CTG CTG CTG CTG CTG CTG GTT
7731 TGC * 7 19/21 TGC TGC TGC GTC TGC TGC TGC
10199 TGC * 8 22/24 TGC CGC TGC TGC TGC TGC TGC TGA
36767 TGC * 9 25/27 TGC TGC TGC TGC TGT TGT TGC TGC TGC
50951 TTA * 7 19/21 TTA TTA TTA TTA TTA TTT TTG
51956 GCA * 7 19/21 GCA GCA GCA GCA GCA ACA GCG
52825 GCA * 8 23/24 GCA GCA GCA GCA GCA GCA GCA ACA
54185 CAG * 11 31/33 CAG CAG CAA CAA CAG CAG CAG CAG CAG CAG CAG
54392 GCG * 8 22/24 GCG GCG GCG GCG GAG GCG GCG GGG
62586 ACC * 8 22/24 ACC ACC ACT ACC ACA ACC ACC ACC
66084 CCA * 7 19/21 CCA CCA CCA CTT CCA CCA CCA
78671 GCG * 7 19/21 GCG GCG GCG GCG GCG GCT GCA
91588 TCA * 10 27/30 TCA TCG TCA TCA TCA TCA TCA TCA TCG TCG
118223 TTA * 7 19/21 TTA TTA TTA TTA TTA TTA TAT
124395 TTG * 7 20/21 TTG TTG TTG TTG TTG TTG TTC
139388 ATC * 8 22/24 ATC ATC ATC ATC ATC ATC ATC CTG
147446 AGC * 11 30/33 AGC AAC AGC AGC AGC AGC CGC AGC AGC AAC AGC
148722 GCA * 11 31/33 GCA GCA GCA GCA GCA GCC GCA GCA GCA GCA TCA
148945 CAA * 8 22/24 CAA CAC CAA CAG CAA CAA CAA CAA
161680 CAT * 14 38/42 CAT CAT CCA CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CCC
165620 GGT * 7 20/21 GGT GAT GGT GGT GGT GGT GGT
166478 TCT * 7 19/21 TCT TCT TCC TCT TCT TCT TGT
170710 CAG * 8 22/24 CAG CAG CAG CGG CAG CAG CAG CAA
171420 CAG * 10 27/30 CAG CAG CAA CAT CAG CAG CAG CAG CAG CAA
173532 GCT * 7 19/21 GCT GCT GCT GCT GCT GCA GTT
178606 CAG * 8 22/24 CAG CCC CAG CAG CAG CAG CAG CAG
178755 TGC * 10 27/30 TGC TGC TGC TGC TGC TGG TGC TGC TGC AGT
183217 GTT * 8 22/24 GTT GTT GTT GTT GTT GCT GCT GTT
185313 AAT * 10 28/30 AAT AAT AAT AAT AAT AAT AAC AAC AAT AAT
190631 AAC * 12 33/36 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAA CAA AAC
194002 TGC * 7 19/21 TGC TGC TGC TGT TGC AGC TGC
218219 GCA * 7 19/21 GCA GCG GCA GCG GCA GCA GCA
219826 TCA * 7 19/21 TCA TCA TCA TCA TCA TTA GCA
219883 TGC * 7 19/21 TGC TGC TGT TGC TGC TGC TGT
220103 CTG * 8 22/24 CTG CTG TTG CTG CTG CTG CTG TTG
220150 TGC * 7 20/21 TGC TGC TGC TGC TGC TGC AGC
224734 TGC * 10 27/30 TGC TGC TGT TGC TGC TGC TGC TGC TGT TGA
225229 TGG * 14 38/42 TGG TAG TGG TTG TGG TGG TGG TGG TGG TGG TGG TGG TGC TGC
225934 CAG * 7 20/21 CAG CAG CAG CAG CAG CAA CAG
229493 GCA * 10 27/30 GCA GCA GCA GCA GCA GCA GCA CCA CCA CCA
231279 TGC * 8 22/24 TGC TGC CGC TGC TGC TGC TGC TGT
233116 GCA * 7 19/21 GCA GCA ACA GCA GCA GCA ACA
235172 GCA * 11 31/33 GCA ACC GCA GCA GCA GCA GCA GCA GCA GCA GCA
235369 TGC * 8 22/24 TGC TGC TGC TGC TGT TGC TGC TGT
235472 GCA * 8 23/24 GCA GCA GCA GCA GCA ACA GCA GCA
235618 TGC * 7 19/21 TGC TGC TGC TGT TGC TGC TGT
236005 TGC * 7 19/21 TGC CGC TGC TGC TGC TGC TGG
237788 CAA * 10 27/30 CAA CAC CAA CAA CAG CAA CAA CAA CAA CAC
237827 CAA * 7 19/21 CAA CAA CAA CGG CAA CAA CAA
265756 TCA * 7 20/21 TCA TCA TCA TCA TCA TCA TTA
-----------------------------------------------------------------------------------------
Total sequence length......................... 281602
Total number of repeats detected.............. 50
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 0 1 0 0 0 0 0 0 0 0 0 0
AAC 1 0 1 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 0 1 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 2 2 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 0 0 1 0 0 0 0 0 0 0 0 0
TGC 12 10 2 0 0 0 0 0 0 0 0 0 0
TCA 3 2 1 0 0 0 0 0 0 0 0 0 0
TCT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 8 5 3 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCG 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 3 2 1 0 0 0 0 0 0 0 0 0 0
CAT 1 0 0 1 0 0 0 0 0 0 0 0 0
CAG 5 3 2 0 0 0 0 0 0 0 0 0 0
CTG 2 2 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 2 TTA + 0 TAT = 3
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 1 TCT = 1
1 AAC + 0 ACA + 3 CAA + 1 GTT + 1 TTG + 0 TGT = 6
0 ATG + 0 TGA + 0 GAT + 1 CAT + 1 ATC + 3 TCA = 5
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 8 GCA + 5 CAG + 1 GCT + 2 CTG + 12 TGC = 29
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
1 ACC + 1 CCA + 0 CAC + 1 GGT + 0 GTG + 1 TGG = 4
0 GGC + 2 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7294729|gb|AE003545.1|AE003545 Drosophila melanogaster genomic scaffold 142000013386050 section 32 of 54, complete sequence
Position Repeat Coverage Repeat
45876 CAT * 7 19/21 CAT CAT CAT CAT CAA CAA CAT
46279 GCT * 11 30/33 GCT GCT GCT GCT GTT GTT GCT GCT GCT GCT GTT
62579 TGT * 7 19/21 TGT TGT TGT TAT TGC TGT TGT
64786 GCT * 12 33/36 GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCC GGG
98297 TGT * 7 19/21 TGT TGG TGT TGT TGT TGC TGT
133147 ATG * 7 20/21 ATG ATG ATG ATG ATG ATG ATA
150424 TCA * 12 33/36 TCA TCA TCA TCA TCA TCA GCA TCA GCA TCA GCA TCA
156019 AGC * 9 25/27 AGC AGC AGC AGC AGC AGC AAC AGC AGT
156937 CGC * 7 19/21 CGC CGC CGC CGC TGC TGC CGC
162302 CAG * 10 27/30 CAG CAG CAG CAG CAT CAG CAG CAG CAG ATG
162412 GCA * 10 27/30 GCA ACC GCA GCA GCA GCA GCA GCA GCA CCA
162458 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CAA
167764 TAA * 9 25/27 TAA TAA CAA CAA TAA TAA TAA TAA TAA
171040 AAT * 7 19/21 AAT AAT AAT AAT AAC AAT AAA
177144 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CAA
181414 AAT * 7 19/21 AAT AAT AAT AAT AAT AAA AAA
190339 TGT * 8 22/24 TGT TGT TGT TGT TGT TGT TGT TTG
198892 TTG * 7 19/21 TTG TTG TTG TTG TTG TTG GTT
199512 CAA * 8 23/24 CAA CAA CAA CAA CAA CAA CTA CAA
205005 TGT * 7 19/21 TGT TAT TGT TGT TGT TGC TGT
205060 GTT * 9 25/27 GTT GTT GTT GTT GTT GTT GTT GCT TTT
206534 TCA * 7 20/21 TCA TCA TCA TCA TCA TCA TCC
223682 CTG * 7 19/21 CTG CTG CTG CCG CTG CTG CTT
229012 TTA * 8 22/24 TTA ATA TTA TTA TTT TTA TTA TTA
250158 CTG * 8 22/24 CTG CTG CTG CTG CTG CTG CTG GCG
254737 AAC * 8 22/24 AAC AAC AAC AGC AGC AAC AAC AAC
-----------------------------------------------------------------------------------------
Total sequence length......................... 281893
Total number of repeats detected.............. 26
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 2 2 0 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 4 4 0 0 0 0 0 0 0 0 0 0 0
TCA 2 1 1 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 0 1 0 0 0 0 0 0 0 0 0 0
GCT 2 0 2 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 3 2 1 0 0 0 0 0 0 0 0 0 0
CTG 2 2 0 0 0 0 0 0 0 0 0 0 0
CGC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
2 AAT + 0 ATA + 1 TAA + 0 ATT + 1 TTA + 0 TAT = 4
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 1 CAA + 1 GTT + 1 TTG + 4 TGT = 8
1 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 2 TCA = 4
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 1 GCA + 3 CAG + 2 GCT + 2 CTG + 0 TGC = 9
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 1 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7294680|gb|AE003544.1|AE003544 Drosophila melanogaster genomic scaffold 142000013386050 section 31 of 54, complete sequence
Position Repeat Coverage Repeat
45481 ATA * 8 23/24 ATA ATA ATA ATA ATT ATA ATA ATA
97976 GAT * 9 25/27 GAT CAC GAT GAT GAT GAT GAT GAT GAT
115940 ACA * 7 19/21 ACA ACA ACA ACA ACT ACA ACG
116660 ACA * 7 19/21 ACA ACA ACA ACA ACT ACA ACG
124322 ATA * 10 27/30 ATA ATA ATA ATA ATA ATA ATA TTT ATA AAA
129692 TGC * 8 23/24 TGC TGC TGT TGC TGC TGC TGC TGC
129773 TGC * 11 30/33 TGC TGT TGC TGC TGC TGC TGC TGC TGT TGC TGT
129812 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC AAC TGC
130956 TGC * 11 30/33 TGC TGC TGC ATC TGC TGC TGC TGC TGC TGC TGG
131270 CTG * 7 19/21 CTG CTG CTG TTG CTG CTG CGG
132307 ATA * 7 19/21 ATA ATC ATA ATA GTA ATA ATA
134983 CAT * 7 19/21 CAT CAC CAT CAC CAT CAT CAT
138121 AAT * 7 19/21 AAT AAT AAT AAT AAT ATT ATT
143808 TAT * 7 20/21 TAT TAT TAT TAA TAT TAT TAT
177309 AAC * 10 28/30 AAC AAC AAC AAC AAC AAC AAC AAT AAT AAC
180435 CAA * 7 19/21 CAA CAA TAA CAA CAA CAG CAA
181157 GCA * 11 30/33 GCA GCA ACA GCA GCA GCA GCA GAA GCA ACA GCA
186301 CAG * 10 27/30 CAG CAA CAG CAG CAG CAG CAG CAG CAG TTG
187862 TCA * 7 19/21 TCA TCA TCA TAA TCA TCA GCA
191009 CAG * 7 19/21 CAG TCG CAG CAG CAG CAG CAG
191147 ACA * 8 22/24 ACA ACA ACA ACA ACA ACA GCA GCA
191190 CAG * 7 19/21 CAG CAG CAG CAG CAA CAC CAG
191328 AGC * 7 19/21 AGC AGC AGC AGC AGC AGC AAA
191797 CAA * 8 22/24 CAA CAC CAA CAA CAC CAA CAA CAA
196386 ATT * 7 20/21 ATT ATT ATT ATT ATT GTT ATT
206114 AAC * 10 28/30 AAC AAG CAC AAC AAC AAC AAC AAC AAC AAC
209082 AAT * 7 19/21 AAT AAT AAC AAT AAT CAT AAT
209115 CAC * 7 19/21 CAC CAC CAT CAT CAC CAC CAC
209304 AGC * 11 30/33 AGC AGC AGC AGC AGC AGC AGC AAC AGC AAC AAC
211940 CCA * 9 25/27 CCA ACA CCA CCA CCA TCA CCA CCA CCA
217435 TAT * 7 20/21 TAT TAT TAT TAT TAT TAT TAC
224993 GTT * 7 19/21 GTT GTT GTT GTT GTG GTT GAT
226624 AGC * 7 19/21 AGC AGC AAC ACC AGC AGC AGC
226656 CAG * 7 19/21 CAG CAG TAG CAA CAG CAG CAG
235414 GTA * 8 22/24 GTA GTA GTA GTA GTA GTC GTA ATA
249495 GTG * 7 19/21 GTG GTG GTG GTA GTG GTA GTG
-----------------------------------------------------------------------------------------
Total sequence length......................... 281869
Total number of repeats detected.............. 36
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 2 2 0 0 0 0 0 0 0 0 0 0 0
AAC 2 0 2 0 0 0 0 0 0 0 0 0 0
ATA 3 2 1 0 0 0 0 0 0 0 0 0 0
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 3 2 1 0 0 0 0 0 0 0 0 0 0
ACA 3 3 0 0 0 0 0 0 0 0 0 0 0
TAT 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 4 2 2 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTA 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 0 1 0 0 0 0 0 0 0 0 0 0
CAA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 4 3 1 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
2 AAT + 3 ATA + 0 TAA + 1 ATT + 0 TTA + 2 TAT = 8
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
2 AAC + 3 ACA + 2 CAA + 1 GTT + 0 TTG + 0 TGT = 8
0 ATG + 0 TGA + 1 GAT + 1 CAT + 0 ATC + 1 TCA = 3
0 AGT + 1 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
3 AGC + 1 GCA + 4 CAG + 0 GCT + 1 CTG + 4 TGC = 13
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 1 CCA + 1 CAC + 0 GGT + 1 GTG + 0 TGG = 3
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7294631|gb|AE003543.1|AE003543 Drosophila melanogaster genomic scaffold 142000013386050 section 30 of 54, complete sequence
Position Repeat Coverage Repeat
90724 ATA * 7 19/21 ATA ATA ATT ATA ATA ATA TTA
152622 GCA * 7 19/21 GCA GCA ACA GCA ACA GCA GCA
153658 CCA * 8 23/24 CCA GCA CCA CCA CCA CCA CCA CCA
209575 TAT * 8 22/24 TAT TAA TAA TAT TAT TAT TAT TAT
247461 CAA * 7 19/21 CAA CAA CAA CAC CAA CAG CAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 284386
Total number of repeats detected.............. 5
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 1 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 1 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 1
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 1 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7294592|gb|AE003542.1|AE003542 Drosophila melanogaster genomic scaffold 142000013386050 section 29 of 54, complete sequence
Position Repeat Coverage Repeat
14626 AAC * 8 22/24 AAC AAC AAC AAC AAC AAC AAA ACC
18415 CAG * 10 27/30 CAG CAG CAA CAG CAG CAG CAG TAG CAG CAC
21378 CCA * 8 22/24 CCA CCA CCA CCA CCA CTA TCA CCA
27950 GCA * 7 19/21 GCA GCA GTA GCA GCA GCA GAA
29557 AAT * 7 19/21 AAT AAT AAT AGT AAT AAT AAA
29578 TAA * 10 28/30 TAA TAA TAA TAA TAA TAA TAA TAA TAA ACA
49959 GAT * 8 22/24 GAT GAT GAC GAT GAT GAT GGT GAT
57629 TAT * 7 21/21 TAT TAT TAT TAT TAT TAT TAT
68167 GCA * 10 28/30 GCA AAA GCA GCA GCA GCA GCA GCA GCA GCA
71718 ACA * 7 19/21 ACA ACA ACA ACA AAA ACA ACT
75473 AGC * 7 19/21 AGC AAA AGC AGC AGC AGC AGC
91769 GCT * 8 22/24 GCT GCT GCT GCT GCT GCT GCT ACC
145685 AAT * 7 19/21 AAT GAA AAT AAT AAT AAT AAT
177426 CAT * 8 22/24 CAT CAT CAT CAT CAT CAT CGT CCT
186294 CAG * 7 19/21 CAG CAG CAG GCG CAG CAG CAG
188340 TAT * 7 19/21 TAT TAT TAT TAA TAT TAT TCT
193506 TCC * 12 33/36 TCC TCC TCC TCC TCC TCC TCC TCC TCG TCT TCT TCC
199677 CAA * 10 27/30 CAA CAA TAA CAA CAA CAA CAA CAA CAG GAA
207852 GTT * 8 22/24 GTT GTT GTT GTT GTT GTT GTT CCT
220741 CAA * 9 25/27 CAA CAA CTA CAA CAA CAG CAA CAA CAA
225609 TAT * 8 22/24 TAT TAA TAT TAT TAT TAT TAA TAT
251999 TGA * 8 23/24 TGA TGA TGA TGA TGA TGA TGA TGG
263651 CAA * 10 27/30 CAA CAA CAA CAA CAA CAA CAG CAA CAG CCA
-----------------------------------------------------------------------------------------
Total sequence length......................... 289887
Total number of repeats detected.............. 23
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 2 2 0 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 0 1 0 0 0 0 0 0 0 0 0 0
TAT 3 3 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TCC 1 0 1 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 1 1 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 3 1 2 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 1 1 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
2 AAT + 0 ATA + 1 TAA + 0 ATT + 0 TTA + 3 TAT = 6
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 1 ACA + 3 CAA + 1 GTT + 0 TTG + 0 TGT = 6
0 ATG + 1 TGA + 1 GAT + 1 CAT + 0 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 1 TCC = 1
1 AGC + 2 GCA + 2 CAG + 1 GCT + 0 CTG + 0 TGC = 6
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 1 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7294556|gb|AE003541.1|AE003541 Drosophila melanogaster genomic scaffold 142000013386050 section 28 of 54, complete sequence
Position Repeat Coverage Repeat
23834 AGG * 7 19/21 AGG AGT AGG AGG AGC AGG AGG
36123 TTA * 7 19/21 TTA CTA CTA TTA TTA TTA TTA
50252 GAA * 8 22/24 GAA AAA GAA GAA GAA GAA GAA GAC
50403 AAG * 8 23/24 AAG AAG AAG AAA AAG AAG AAG AAG
50547 AAG * 8 22/24 AAG AAG AAG AAG AGC AAG AAG AAG
58781 CCG * 7 20/21 CCG CCG CCG CCG CTG CCG CCG
59096 TGC * 7 19/21 TGC TGG TGC AGC TGC TGC TGC
108319 TTC * 8 22/24 TTC GTC TGC TTC TTC TTC TTC TTC
110470 GCA * 14 38/42 GCA GCA GCA GCA GCA GCA GCA GCG GCA GCG GCA GCA GCG GCG
112884 CAG * 11 30/33 CAG CAG CAG CAT CAG CAG CAG CAG CAG CAA CAT
119887 CAT * 7 20/21 CAT CAT CAT CAT CAT CAT CAC
131080 GCC * 8 23/24 GCC GCC GCC GCC GCC GCC GCC GCA
137694 AGT * 7 19/21 AGT AGT AGT AGT AGT ATT GGT
144014 AGC * 10 28/30 AGC AGC AGC AGC AGC AGC AGC AGC AAC AAC
145532 GCA * 7 20/21 GCA GCA GCA GCA GCA GCA ACA
153572 GCA * 8 22/24 GCA ACA CCA GCA GCA GCA GCA GCA
153943 GAG * 8 22/24 GAG GAT GAG CAG GAG GAG GAG GAG
155792 TCG * 7 19/21 TCG GAG TCG TCG TCG TCG TCG
214628 TGA * 10 27/30 TGA TAA TGA TGA TGG TGA TGA TGA TGA TGT
236571 GCG * 7 19/21 GCG GCG GCG GCG GTG GCG GTG
236612 AGC * 8 22/24 AGC AGC AGC AGC AAC AGC ATC AGC
246563 GCA * 8 22/24 GCA GCC GCC GCA GCA GCA GCA GCA
246739 GTT * 12 33/36 GTT GTT GTT GTT GTT GTT ATT GTT GTG GTT GCT GTT
246893 TGC * 12 33/36 TGC TGC TGC TGC TGA TGT TGC TGC TGC TGG TGC TGC
247942 TGC * 8 22/24 TGC TGC CGC TGC TGC TGC TGC TGA
249422 AGC * 9 25/27 AGC AGC AGC AGC AGC AGC AGC AGC AAT
250642 ACA * 7 19/21 ACA AGA ACA ACA GCA ACA ACA
-----------------------------------------------------------------------------------------
Total sequence length......................... 265547
Total number of repeats detected.............. 27
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAG 2 2 0 0 0 0 0 0 0 0 0 0 0
AGT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 3 2 1 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 3 2 1 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 4 3 0 1 0 0 0 0 0 0 0 0 0
GCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 0 1 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 1
2 AAG + 0 AGA + 1 GAA + 0 CTT + 1 TTC + 0 TCT = 4
0 AAC + 1 ACA + 0 CAA + 1 GTT + 0 TTG + 0 TGT = 2
0 ATG + 1 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 2
1 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 1
1 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 2
3 AGC + 4 GCA + 1 CAG + 0 GCT + 0 CTG + 3 TGC = 11
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 1 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 1 GCG + 0 CGG + 1 GCC + 1 CCG + 0 CGC = 3
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7294528|gb|AE003540.1|AE003540 Drosophila melanogaster genomic scaffold 142000013386050 section 27 of 54, complete sequence
Position Repeat Coverage Repeat
8656 TTA * 8 23/24 TTA TTA TTA TTA TTA TTA TTA ATA
9226 TTG * 11 31/33 TTG TTG TTG TTG TTG TTG CTG TTG TTG TTG CTG
9262 GTT * 8 22/24 GTT GTT GTT GCT GTT GTT GTT GTC
10495 TTG * 9 26/27 TTG TTG ATG TTG TTG TTG TTG TTG TTG
37299 ATG * 10 27/30 ATG ATG GTG GTG ATG ATG ATG ATG ATG ATT
66967 GAT * 7 19/21 GAT GAT GAT GAT GAT GAT GGA
94740 CAG * 7 19/21 CAG CAG CAG CAA CAA CAG CAG
156666 ATC * 7 19/21 ATC ATC GTC ATC ATC ATC ATT
170991 GCA * 8 22/24 GCA ACA GCA GCA GCA GCA GCA ACA
178145 CAA * 7 19/21 CAA CAG CAA CAA CAA CGA CAA
181021 AGC * 8 23/24 AGC AGC AGC AGC AGC AGC AGC GGC
181052 AGC * 8 22/24 AGC AGC AGC AGC AGC AGC AAC ACC
181201 TGC * 7 19/21 TGC TGC TGT TGT TGC TGC TGC
181264 TGC * 8 23/24 TGC TGT TGC TGC TGC TGC TGC TGC
181327 CAA * 8 22/24 CAA CAA CAA CAA CAA CAA CAA GAC
182827 ACA * 7 19/21 ACA GCA ACA ACA ACA ACA GCA
185112 CAG * 12 33/36 CAG CAG CAG CAG CAG CAG CGG CAG GAG CAG GAG CAG
192835 TAT * 7 19/21 TAT TAT TAG TAT TAT TAT TTT
206445 CAC * 7 20/21 CAC CAC CAC CAC CAC CAC TAC
208640 TGC * 7 19/21 TGC TGC TGC TGC TGC TGC TTT
212472 GCT * 14 38/42 GCT GCT GCT GCT GCT GCT GCT GCT CCT GCT GTT GCT GTT GTT
212963 TGC * 7 19/21 TGC TGC TGA TGC TTC TGC TGC
235950 CAT * 7 19/21 CAT CAT CAT CAT CAC CAC CAT
241033 CGT * 15 41/45 CGT CGT CGT CGT CGT CGT CGT CGT CGT CGA CGT TCT CGT TGT CGT
248419 GCC * 7 19/21 GCC GCT GCC GCT GCC GCC GCC
252913 CAC * 7 20/21 CAC CAC CAC CAT CAC CAC CAC
253462 GCT * 8 22/24 GCT GCT CCC GCT GCT GCT GCT GCT
253778 TGC * 7 19/21 TGC TGC TGC TGC AAC TGC TGC
253800 GCT * 7 19/21 GCT GCT GTT GCT GAT GCT GCT
254073 GCT * 12 33/36 GCT GCT GCT GAT TCT GCT GCT GCT GCT GCT GCT GTT
278615 TGC * 9 25/27 TGC TGC TGC AGT TGC TGC TGC TGC TGC
278713 CTG * 15 41/45 CTG CTG CAA CTG CTG CTG CTG CTG CTG CGG CTG CTG CTG CTG CGG
278918 TGC * 7 19/21 TGC TGC GCC TGC TGC TGC TGC
278942 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC TGC AGA
281691 CAA * 8 22/24 CAA CCA CAA CAA CAA CAA CAA CGA
284991 CCG * 8 23/24 CCG CCG CCG CCG CCG CCG CCA CCG
287862 CCA * 8 22/24 CCA CCA CCA CCA GCA CCA CCA GCA
-----------------------------------------------------------------------------------------
Total sequence length......................... 297385
Total number of repeats detected.............. 37
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATG 1 0 1 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 2 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 2 1 1 0 0 0 0 0 0 0 0 0 0
TGC 8 8 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 4 2 1 1 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 3 3 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 1 1 0 0 0 0 0 0 0 0 0 0
CAC 2 2 0 0 0 0 0 0 0 0 0 0 0
CTG 1 0 0 1 0 0 0 0 0 0 0 0 0
CGT 1 0 0 1 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 1 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 3 CAA + 1 GTT + 2 TTG + 0 TGT = 7
1 ATG + 0 TGA + 1 GAT + 1 CAT + 1 ATC + 0 TCA = 4
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
2 AGC + 1 GCA + 2 CAG + 4 GCT + 1 CTG + 8 TGC = 18
0 ACG + 0 CGA + 0 GAC + 1 CGT + 0 GTC + 0 TCG = 1
0 ACC + 1 CCA + 2 CAC + 0 GGT + 0 GTG + 0 TGG = 3
0 GGC + 0 GCG + 0 CGG + 1 GCC + 1 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7294496|gb|AE003539.1|AE003539 Drosophila melanogaster genomic scaffold 142000013386050 section 26 of 54, complete sequence
Position Repeat Coverage Repeat
5664 GCT * 8 22/24 GCT GCT GCT GCT GCT GCT ACT GAT
11202 TCA * 7 19/21 TCA TCA TCT TCA TCA TCT TCA
15239 TGT * 8 22/24 TGT TGT TGT TGG TGT TGT TGT TTT
19068 CAG * 7 19/21 CAG CAC CAG CAG CAG GAG CAG
31743 TGG * 8 22/24 TGG TGG TGG TGG TGG TGG TGG CTG
47475 ACG * 7 19/21 ACG AAG ACG ACG ACG ACG TCG
54310 AGG * 7 19/21 AGG AGG ACG ATG AGG AGG AGG
61303 GAT * 7 19/21 GAT CAT GAT GAT AAT GAT GAT
69396 GAT * 8 23/24 GAT GAT GAT GAT GAT GAT GGT GAT
101109 TTG * 7 19/21 TTG TTG TTC TTG TTG TTC TTG
112842 AAC * 7 19/21 AAC AAA AAC AAC AAT AAC AAC
117058 TGC * 11 30/33 TGC TGT TGC TGC TGC TGC TGC TGT TGC CGC TGC
117100 TGC * 8 22/24 TGC TTT TGC TGC TGC TGC TGC TGC
216073 ATA * 7 19/21 ATA ATA ATA ATA ATA AGA ACA
-----------------------------------------------------------------------------------------
Total sequence length......................... 271729
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
ACG 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 1 1 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 0 CAA + 0 GTT + 1 TTG + 1 TGT = 3
0 ATG + 0 TGA + 2 GAT + 0 CAT + 0 ATC + 1 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 1
0 AGC + 0 GCA + 1 CAG + 1 GCT + 0 CTG + 2 TGC = 4
1 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 1 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7294470|gb|AE003538.1|AE003538 Drosophila melanogaster genomic scaffold 142000013386050 section 25 of 54, complete sequence
Position Repeat Coverage Repeat
772 TTG * 7 19/21 TTG TTG CTG TTG TTG TTG CTG
18471 CAG * 8 22/24 CAG CAG CAT CAG CAG CAG CAG CAC
26099 TGA * 9 25/27 TGA TTA TGA TGA TGA TGA TGA TGA TGC
26410 ACA * 7 19/21 ACA ACA CCA ACA ACA GCA ACA
27923 GCA * 7 21/21 GCA GCA GCA GCA GCA GCA GCA
48718 CAG * 8 22/24 CAG CAG CAG CAA CAA CAG CAG CAG
49194 AGC * 10 27/30 AGC AGC CGC AGC AGC AGC AGC AAC AGC ATC
49322 CAG * 7 19/21 CAG CCG CAG CAG CAG CAG CAA
52801 GAT * 11 31/33 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAA GGT
55506 CTG * 13 36/39 CTG CTG CTC CTA CTG CTG CTG CTG CTG CTG CTG CTG TTG
58763 AGC * 7 19/21 AGC AGC AGC AGC AGT AGC TGC
87878 TCA * 7 19/21 TCA TCA TCA TCA TCG TCG TCA
107544 ATG * 8 22/24 ATG ATG ACG ATG ATG ATG ATG CTG
120580 CAG * 7 19/21 CAG CAG CAG GAG CAG GAG CAG
129828 CAG * 7 20/21 CAG CAG CAG CAG CGG CAG CAG
182343 GCA * 9 25/27 GCA ACG GCA GCA GCA GCA GCA GCA GCA
182383 GCA * 7 19/21 GCA ACA GCA GCA GCA GCA ACA
185712 GTC * 7 19/21 GTC GTC GTC GTT GTC GTT GTC
206060 GCA * 8 22/24 GCA GCA GCA GAA GCA GCA GCA GGA
207870 GAT * 7 19/21 GAT GAT GAT GAT GAT GAT GTC
212571 CGT * 9 25/27 CGT CGT CAT CGC CGT CGT CGT CGT CGT
220702 ACA * 7 19/21 ACA ACA ACA ACA GCT ACA ACA
240710 TGA * 7 19/21 TGA TGA TGC CGA TGA TGA TGA
242197 GCT * 8 22/24 GCT GCT GCT GTT GCT GCT GCT GTT
242365 GCA * 8 22/24 GCA GCA ACA ACA GCA GCA GCA GCA
255779 TCA * 8 22/24 TCA TCA TCA GCA TCA GCA TCA TCA
-----------------------------------------------------------------------------------------
Total sequence length......................... 303715
Total number of repeats detected.............. 26
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 1 1 0 0 0 0 0 0 0 0 0 0
ACA 2 2 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 2 2 0 0 0 0 0 0 0 0 0 0 0
TCA 2 2 0 0 0 0 0 0 0 0 0 0 0
GAT 2 1 1 0 0 0 0 0 0 0 0 0 0
GTC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 5 5 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 5 5 0 0 0 0 0 0 0 0 0 0 0
CTG 1 0 0 1 0 0 0 0 0 0 0 0 0
CGT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 2 ACA + 0 CAA + 0 GTT + 1 TTG + 0 TGT = 3
1 ATG + 2 TGA + 2 GAT + 0 CAT + 0 ATC + 2 TCA = 7
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
2 AGC + 5 GCA + 5 CAG + 1 GCT + 1 CTG + 0 TGC = 14
0 ACG + 0 CGA + 0 GAC + 1 CGT + 1 GTC + 0 TCG = 2
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7294453|gb|AE003537.1|AE003537 Drosophila melanogaster genomic scaffold 142000013386050 section 24 of 54, complete sequence
Position Repeat Coverage Repeat
569 GCT * 7 19/21 GCT GCT TCT GCT CCT GCT GCT
11194 CGA * 7 19/21 CGA CGA CGA CGA CGG CGA CGT
23302 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAA CAA
29774 GTT * 7 19/21 GTT GTT GTT GCT GCT GTT GTT
30728 TGC * 8 23/24 TGC TGC TGC TGC TGC TGC TGC TAC
63041 TGT * 7 19/21 TGT TGT TGT TGT GGT TGT TAT
68107 TGT * 7 19/21 TGT TGT TGC TGT TGT TGA TGT
89127 AGC * 11 31/33 AGC AGC AGC AGC AGC AGC AGC AGC AGC AGC ACG
95879 TAA * 7 20/21 TAA TAA TAA TAA TAA TAA TAC
105035 TGC * 7 19/21 TGC TGT TGC TGC CGC TGC TGC
105128 GCA * 15 41/45 GCA GCA GAA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCT TCT
126991 TGT * 7 19/21 TGT TGA TGT CGT TGT TGT TGT
136233 TGC * 11 31/33 TGC TCC TCC TGC TGC TGC TGC TGC TGC TGC TGC
137614 ATC * 8 23/24 ATC ATC ATC ATC ATC ATC ATC GTC
138537 GCA * 10 28/30 GCA ACA GCA GCA GCA GCA GCA GCA GCA ACA
150530 TCA * 8 22/24 TCA TCG TCG TCA TCA TCA TCA TCA
150779 CCA * 7 19/21 CCA CCT CCA CCT CCA CCA CCA
166205 TCC * 8 22/24 TCC TCC TCA TAC TCC TCC TCC TCC
195657 ATT * 7 19/21 ATT ATA ATT ATT ATT ATT ATA
219634 CTG * 7 19/21 CTG TTG TTG CTG CTG CTG CTG
219734 TGC * 12 33/36 TGC TGC AGC TGC TGT TGC TGC TGC TGC TGC TGC TGG
221029 CTG * 7 19/21 CTG CTG ATG CTG CTG CTG GTG
221338 CTG * 7 19/21 CTG TTG CTG CTG CTG CTG TTG
221639 CCA * 7 19/21 CCA CCA CCG CCG CCA CCA CCA
222518 TGC * 7 19/21 TGC TGC TGA TGC TGC TGC TGG
222650 TTG * 8 22/24 TTG TTA TTA TTG TTG TTG TTG TTG
223094 TGC * 9 25/27 TGC TGC TGC TGC TGC TGC TGT TGT TGC
223419 GCT * 8 22/24 GCT GCT GCT GCT GTT GTT GCT GCT
226249 GCT * 8 22/24 GCT GCT GCT GCT GCT GCT GCT GTC
229616 GGA * 7 19/21 GGA GGA GCA GGA GCA GGA GGA
229935 GAT * 7 19/21 GAT GAT GAT GGG GAT GAT GAT
233251 CTG * 7 19/21 CTG CAA CTG CTG CTG CTG CTG
236530 CAG * 8 22/24 CAG CAG CAG CAA CAG CAA CAG CAG
247627 TGC * 7 19/21 TGC TGA TGC TGT TGC TGC TGC
251506 CTG * 15 41/45 CTG CTG CTG CTG TTG GTG CTG CTG CTG CTG CTG TTG CTG CTG CTT
-----------------------------------------------------------------------------------------
Total sequence length......................... 280570
Total number of repeats detected.............. 35
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 0 1 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 3 3 0 0 0 0 0 0 0 0 0 0 0
TGC 7 5 2 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 0 1 1 0 0 0 0 0 0 0 0 0
GCT 3 3 0 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CTG 5 4 0 1 0 0 0 0 0 0 0 0 0
CGA 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 1 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 1 GTT + 1 TTG + 3 TGT = 5
0 ATG + 0 TGA + 1 GAT + 0 CAT + 1 ATC + 1 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 0 GAG + 0 CCT + 0 CTC + 1 TCC = 2
1 AGC + 2 GCA + 2 CAG + 3 GCT + 5 CTG + 7 TGC = 20
0 ACG + 1 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 2 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7294412|gb|AE003536.1|AE003536 Drosophila melanogaster genomic scaffold 142000013386050 section 23 of 54, complete sequence
Position Repeat Coverage Repeat
36257 CCT * 11 30/33 CCT CCT CCT CCT CCT CCG CCG CCT CCT CCC CCT
36702 TGT * 7 19/21 TGT TGT TGC TGT TGT TGT TGC
59563 TAA * 7 19/21 TAA AAA TAA TAA TAA TAA TAT
62472 GCA * 12 33/36 GCA GCA ACA ACA GCA GCA GCA GCA GCA GCA GCA ACA
62508 ACA * 22 60/66 ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA GCA GCA GCA GCA GCA GCA
64232 GCA * 7 20/21 GCA ACA GCA GCA GCA GCA GCA
64415 ACA * 8 22/24 ACA GCA GCA ACA ACA ACA ACA ACA
64439 GCA * 7 19/21 GCA GCA GCA GCA GCA ACA ACA
64461 CAG * 7 19/21 CAG CAG CAG CAA CAA CAG CAG
64737 CAA * 7 19/21 CAA CAA CAA CAA CCG CAA CAA
65363 CAA * 8 22/24 CAA CAA CAG CAA CAA CAA CAA CAG
65891 CAG * 7 19/21 CAG CCG CAG CAG CAG CAA CAG
66942 CAG * 7 19/21 CAG CAA CAG CAG CAG CAG CAA
77002 TGC * 10 28/30 TGC TGC TGC TGC TGC TTC TGC TGT TGC TGC
79928 TTG * 8 22/24 TTG TTG TTG TTG TTG TTG TGG CTG
81490 TGT * 7 19/21 TGT TGT TGT TGC TGC TGT TGT
84842 ACA * 8 22/24 ACA ACA ACA ACA ACA ACA ACA TCC
92539 TCC * 7 20/21 TCC TCC TCC TCC TCC TCC TCG
96804 TCG * 7 19/21 TCG TCG TCG TTG TCG TCC TCG
104368 CAG * 11 30/33 CAG GAG CAG CAG CAG CAG CAG CAG CAG AAG CAC
107999 TGG * 16 45/48 TGG TGC TGG TGG TGG TGG TGG TGG TGG TGG TGC TGG TGG TGT TGG TGG
116864 ACA * 8 22/24 ACA ACG ACC ACA ACA ACA ACA ACA
124737 CAG * 10 27/30 CAG CAG CAG TAG CAG CAG CTG CAG CAG CAA
132515 CAC * 16 44/48 CAC CAC CAC CAC CAT CAC CAC CAC CAC CAT CAC CAC CAC CAC CAC AAA
149063 GCT * 7 19/21 GCT GCT GCT GCT GCT GCC GCC
149092 TGT * 7 19/21 TGT TGT TGT TGT TGT TTT TGG
164237 AAG * 7 19/21 AAG AAG AAG AAG AAG AAG AGC
165073 ACA * 7 19/21 ACA ACA ACA ACA ACA ACA GTA
175884 CAG * 11 30/33 CAG CAG CGG CAG CAG CAG CAG CAG CAG CAG GAT
202955 GCG * 7 19/21 GCG GCA GCA GCG GCG GCG GCG
206063 ACA * 7 19/21 ACA ACA ACA ACA ACA GCA GCA
211362 CTG * 7 20/21 CTG CTG CGG CTG CTG CTG CTG
217767 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CAA
243169 ACC * 7 19/21 ACC ACC ACC TCC ACC TCC ACC
278933 ACA * 7 19/21 ACA GCA GCA ACA ACA ACA ACA
279020 AAC * 7 19/21 AAC AAC AAC AAC AAC AGC GAC
284581 TCA * 7 19/21 TCA TCG TCA TCG TCA TCA TCA
294177 TTG * 8 22/24 TTG ATG TTG TTG TTG TTG ATG TTG
309977 GAT * 10 27/30 GAT GAT GAT GAT GAT GAT GAT GAT GCT GGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 341639
Total number of repeats detected.............. 39
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 7 6 0 0 0 0 1 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGT 3 3 0 0 0 0 0 0 0 0 0 0 0
TGG 1 0 0 0 1 0 0 0 0 0 0 0 0
TGC 1 0 1 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 3 2 1 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 7 4 3 0 0 0 0 0 0 0 0 0 0
CAC 1 0 0 0 1 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 0 ATT + 0 TTA + 0 TAT = 1
1 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 1
1 AAC + 7 ACA + 2 CAA + 0 GTT + 2 TTG + 3 TGT = 15
0 ATG + 0 TGA + 1 GAT + 0 CAT + 0 ATC + 1 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 1 CCT + 0 CTC + 1 TCC = 2
0 AGC + 3 GCA + 7 CAG + 1 GCT + 1 CTG + 1 TGC = 13
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 1 TCG = 1
1 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 1 TGG = 3
0 GGC + 1 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7294397|gb|AE003535.1|AE003535 Drosophila melanogaster genomic scaffold 142000013386050 section 22 of 54, complete sequence
Position Repeat Coverage Repeat
7652 ATA * 7 19/21 ATA ATA ATA TTA AGA ATA ATA
17508 TCA * 7 19/21 TCA TCA TCA TCA TCT TCA TCT
42602 TAA * 7 19/21 TAA TAA AAA TAA TAA TAA TAT
46872 TGC * 7 19/21 TGC TGT TGC TGT TGC TGC TGC
47152 TGC * 7 19/21 TGC TGC TTT TGC TGC TGC TGC
143144 TTG * 8 22/24 TTG CTA TTG TTG TTG TTG TTG TTG
145012 CAA * 11 30/33 CAA CAA CAA CAA CAA TAA CAA CAA CAA CAA CTT
173812 GGA * 7 19/21 GGA GGA GGA GGA GGG GGC GGA
192501 GGC * 7 19/21 GGC AGC GGC GGC GGC GGC GGT
218506 GAA * 7 19/21 GAA GAA GAA GAA ACA GAA GAA
231645 TCA * 8 22/24 TCA TCA TCA TCA TCA TCA TCA AAA
243010 GCA * 8 22/24 GCA TCA GCA GCA ACA GCA GCA GCA
243125 CAG * 7 19/21 CAG CAT CAG CAG CAG CAT CAG
246539 CAA * 7 20/21 CAA CAA CAA CAA CAA CGA CAA
255574 CAG * 17 46/51 CAG CAG CAA CAG CAG CAG CAG CAG CAA CAG CAG CAG CAG CAG CAA CAG TTG
264158 GGT * 7 19/21 GGT GGT GGT GGT GGC GGC GGT
-----------------------------------------------------------------------------------------
Total sequence length......................... 278748
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TCA 2 2 0 0 0 0 0 0 0 0 0 0 0
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 2 1 1 0 0 0 0 0 0 0 0 0 0
CAG 2 1 0 0 1 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 1 TAA + 0 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 1 GAA + 0 CTT + 0 TTC + 0 TCT = 1
0 AAC + 0 ACA + 2 CAA + 0 GTT + 1 TTG + 0 TGT = 3
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 2 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 1
0 AGC + 1 GCA + 2 CAG + 0 GCT + 0 CTG + 2 TGC = 5
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 1 GGT + 0 GTG + 0 TGG = 1
1 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7294375|gb|AE003534.1|AE003534 Drosophila melanogaster genomic scaffold 142000013386050 section 21 of 54, complete sequence
Position Repeat Coverage Repeat
47025 ATA * 7 19/21 ATA ACC ATA ATA ATA ATA ATA
50778 AAT * 7 20/21 AAT AAT AAT AAT AAC AAT AAT
54083 GCT * 8 22/24 GCT ACT GCT GCT GCT GCT GCT GTT
64529 TGC * 8 23/24 TGC TGC TGC TGC TGC TGC CGC TGC
94519 ATA * 9 25/27 ATA ATA ATA ATA ATA ATA ATA ATA TAA
164840 TGC * 10 27/30 TGC TGC TGC TGC TGC TGC TGC TGC TAC CAC
174889 GAC * 7 19/21 GAC GAC AAC GTC GAC GAC GAC
226376 CAA * 7 19/21 CAA CAG CAA TAA CAA CAA CAA
262338 ATA * 7 19/21 ATA AGA ATA ATA ATA ATA ATT
-----------------------------------------------------------------------------------------
Total sequence length......................... 280061
Total number of repeats detected.............. 9
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 3 3 0 0 0 0 0 0 0 0 0 0 0
TGC 2 1 1 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 3 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 4
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 1 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 1 GCT + 0 CTG + 2 TGC = 3
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7294349|gb|AE003533.1|AE003533 Drosophila melanogaster genomic scaffold 142000013386050 section 20 of 54, complete sequence
Position Repeat Coverage Repeat
6862 CAA * 10 27/30 CAA CAA CGA CAA CAG CAA CAA CAA CAA GAA
29169 GCA * 8 22/24 GCA GCA GCA GTA GCA GCA GCA GTA
40215 TGT * 7 19/21 TGT TGC TGT TGT TGT TAT TGT
40424 TGC * 15 41/45 TGC TGC TGC TGT TGC TGC TGC TGT TGC TGC TGC TGC TGA TGT TGC
46159 TGC * 9 25/27 TGC TGC TGC TGC TGC TGC TTG TGC TGC
46189 TGC * 8 22/24 TGC TGC TGT TGC TGC TGC TGT TGC
49468 CAG * 10 27/30 CAG CAG CAG CAA CAG CAG CAG TAG CAG CAA
52386 GAT * 7 19/21 GAT GAT GAT GAT GAT GGT GCT
63167 AAT * 11 31/33 AAT AAT AAT AAT AAG AAT AAT AAT AAT AAC AAT
115326 ACT * 8 22/24 ACT GCT ACT ACT ACT ACT ACA ACT
118197 TCG * 7 20/21 TCG TCG TCG TCG TCG TCG GCG
125535 TGC * 12 33/36 TGC TGC TGC TGC TGT TGT TGC TGC TGC TGC TGC TGG
125764 GCT * 7 19/21 GCT GCT GCT GCT GTT GCT GTT
130836 CTG * 8 22/24 CTG CTG CTG TTG TTG CTG CTG CTG
170672 CAG * 7 19/21 CAG CAG CAG CAA CAG CAG CAA
170695 GCA * 7 19/21 GCA GCA GCA ACA CCA GCA GCA
172170 CAG * 11 30/33 CAG CAA CAG CAG CAG CAG CAG CAG CAG CAA CAA
172290 CAG * 8 22/24 CAG CAG CAA CAG CAG CAG CAG CAA
172568 GCA * 8 22/24 GCA GCA GCA ACA ACA GCA GCA GCA
172592 ACA * 8 22/24 ACA ACA GCA GCA ACA ACA ACA ACA
174158 GGA * 11 30/33 GGA GGA GGA GGA GGA GGA GGA GAA GGT GGA GGC
174281 AGC * 8 22/24 AGC AGC AGC AGC AAC AGC AGA AGC
174524 GCA * 7 19/21 GCA GCA GCA GCG GCG GCA GCA
174863 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAA CAT
184204 TGC * 8 22/24 TGC AGC TGC TGA TGC TGC TGC TGC
190109 TAA * 7 20/21 TAA TAA TAA TAA TAA TAA TAT
204644 GCT * 8 23/24 GCT GCC GCT GCT GCT GCT GCT GCT
230300 ATG * 8 22/24 ATG ATG ATG ATA ATG ATG ATG AGG
-----------------------------------------------------------------------------------------
Total sequence length......................... 275076
Total number of repeats detected.............. 28
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 0 1 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
ACT 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 5 3 1 1 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 4 4 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 1 0 1 0 0 0 0 0 0 0 0 0 0
CAG 5 3 2 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 1 TAA + 0 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 1 CAA + 0 GTT + 0 TTG + 1 TGT = 3
1 ATG + 0 TGA + 1 GAT + 0 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 1 ACT + 0 CTA + 0 TAC = 1
0 AGG + 1 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 1
1 AGC + 4 GCA + 5 CAG + 2 GCT + 1 CTG + 5 TGC = 18
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 1 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7294302|gb|AE003532.1|AE003532 Drosophila melanogaster genomic scaffold 142000013386050 section 19 of 54, complete sequence
Position Repeat Coverage Repeat
149 TGC * 8 22/24 TGC TGC TGC TGC TGG TGG TGC TGC
5609 TTG * 17 48/51 TTG GTG TTG TTG TTG TTG TTA TTG TTG TTG TTG TTA TTG TTG TTG TTG TTG
38700 AAT * 7 19/21 AAT AAT AAT AAT GAT ATT AAT
66079 TGC * 7 19/21 TGC TGG TGC TGC TGC TGC TGT
111772 GCT * 7 20/21 GCT GCT TCT GCT GCT GCT GCT
115688 CAG * 7 19/21 CAG CGG CAG CAG CAG CAA CAG
122192 TGG * 7 19/21 TGG TGG AGG TGG TGG TGG TGC
143447 TTA * 10 28/30 TTA TTA TTG TTA TTA TTA TTA TTA TTA TTT
173951 CAG * 12 33/36 CAG CAG CAG CAG CAA CAA CAG CAG CAG CAG CAA CAG
173999 GCA * 8 22/24 GCA GCA GCG GCC GCA GCA GCA GCA
201664 AAT * 7 21/21 AAT AAT AAT AAT AAT AAT AAT
234378 CTC * 7 19/21 CTC CTC CTC GTC CTC CTC TTC
-----------------------------------------------------------------------------------------
Total sequence length......................... 295377
Total number of repeats detected.............. 12
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 2 2 0 0 0 0 0 0 0 0 0 0 0
TTA 1 0 1 0 0 0 0 0 0 0 0 0 0
TTG 1 0 0 0 1 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 1 1 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
2 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 3
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 1 TTG + 0 TGT = 1
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 1
0 AGC + 1 GCA + 2 CAG + 1 GCT + 0 CTG + 2 TGC = 6
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 1 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7294291|gb|AE003531.1|AE003531 Drosophila melanogaster genomic scaffold 142000013386050 section 18 of 54, complete sequence
Position Repeat Coverage Repeat
5246 GCA * 7 19/21 GCA GCA GCA GTG GCA GCA GCA
9651 TGC * 7 19/21 TGC AGA TGC TGC TGC TGC TGC
49807 GCA * 8 22/24 GCA GCA GGA GCA GCA GCA GCA GGA
110851 GAT * 8 22/24 GAT GAT GAT GAT AAT GAT AAT GAT
121923 AAC * 7 19/21 AAC AGC AAC AAC AAT AAC AAC
128706 ATG * 8 22/24 ATG ACG ATA ATG ATG ATG ATG ATG
147575 GCT * 7 19/21 GCT GTT GTT GCT GCT GCT GCT
151927 GCT * 7 19/21 GCT GCT GCT GCT GGT GGT GCT
226666 ACG * 8 22/24 ACG ATG ATG ACG ACG ACG ACG ACG
233577 TGT * 14 38/42 TGT CGT TGT TGT TGT TGT TGT TGT TGT GGA TGT TGT TGT TGC
245605 GAT * 7 19/21 GAT GGT GAT GAT GAT GAT GAC
251815 CTG * 7 20/21 CTG CTG TTG CTG CTG CTG CTG
251861 TGC * 7 19/21 TGC TGC TGT TGC TGC TGC TGT
261814 CAG * 11 30/33 CAG CAA CAA CAG CAG CAG CAG CAG CAG CAG AAG
264852 TGC * 7 20/21 TGC TGT TGC TGC TGC TGC TGC
264990 GCA * 7 19/21 GCA GCA GCA GCA GCA ACA ACA
265012 CAG * 8 22/24 CAG CAG CAG CAG CAA CTG CAG CAG
265036 CAA * 7 19/21 CAA CAG CAA CAA CAA CAA CAT
266519 TGT * 8 22/24 TGT TGT TGT TGT TGT TGT TGC TGC
268174 AGG * 7 19/21 AGG AGA AGG AGA AGG AGG AGG
-----------------------------------------------------------------------------------------
Total sequence length......................... 274277
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
ACG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 2 1 0 1 0 0 0 0 0 0 0 0 0
TGC 3 3 0 0 0 0 0 0 0 0 0 0 0
GAT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCA 3 3 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 1 1 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 1 CAA + 0 GTT + 0 TTG + 2 TGT = 4
1 ATG + 0 TGA + 2 GAT + 0 CAT + 0 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 1
0 AGC + 3 GCA + 2 CAG + 2 GCT + 1 CTG + 3 TGC = 11
1 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7294232|gb|AE003530.1|AE003530 Drosophila melanogaster genomic scaffold 142000013386050 section 17 of 54, complete sequence
Position Repeat Coverage Repeat
12009 TGT * 7 19/21 TGT TTT TTT TGT TGT TGT TGT
14380 CTG * 7 19/21 CTG CTG CTT CTA CTG CTG CTG
57192 CAT * 8 23/24 CAT CAT CAT CAT CAT CAT CAG CAT
70234 CAG * 7 19/21 CAG CAA CAA CAG CAG CAG CAG
71642 ATT * 7 19/21 ATT ATT ATT ATT ATC GTT ATT
144080 GCA * 7 19/21 GCA GGA GCA GCA GCA GCA GCT
163113 TGC * 7 19/21 TGC TGC TGC TGC TGT TGA TGC
163182 TGC * 12 33/36 TGC TGT TGC TGC TCC TGC TGC TGC TGC TGC TGA TGC
163280 CTG * 9 25/27 CTG CTG TTG CTG TTG CTG CTG CTG CTG
166282 TCG * 7 19/21 TCG TCG TCG TCC TCG TCG TAG
166326 CTG * 8 22/24 CTG CTG CTG CTG CTG CTG TTG TTG
216325 ATT * 7 19/21 ATT ATT ATT ATT ATT TTT TTT
229844 GCA * 7 19/21 GCA GCA GCA GCA GCA GCA GGC
234092 TGC * 7 19/21 TGC TGC TGC TGC TGT CGC TGC
256118 GAA * 7 21/21 GAA GAA GAA GAA GAA GAA GAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 279136
Total number of repeats detected.............. 15
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATT 2 2 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 3 2 1 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 3 3 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 2 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 1 GAA + 0 CTT + 0 TTC + 0 TCT = 1
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 1 TGT = 1
0 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 2 GCA + 1 CAG + 0 GCT + 3 CTG + 3 TGC = 9
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 1 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7294198|gb|AE003529.1|AE003529 Drosophila melanogaster genomic scaffold 142000013386050 section 16 of 54, complete sequence
Position Repeat Coverage Repeat
566 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC TGC GGT
769 GCA * 12 33/36 GCA GCA GCA ACA TCA GCA GCA GCA GCA GCA GCG GCA
1552 TGC * 7 19/21 TGC TGC TGC CGC TGC TGC CGC
1584 TTG * 7 19/21 TTG TTG CAG TTG TTG TTG TTG
7411 CAC * 7 19/21 CAC CAA CAC CAC CAT CAC CAC
8912 GTG * 10 27/30 GTG GTG GTG GTG GTG GTG GTG GAG GAG GAG
70873 TAA * 7 19/21 TAA TAA CAA TAA TAA TAA AAA
73337 CAC * 8 22/24 CAC CGC CAC CAC CAC CAC CAC CAG
83247 AGC * 7 19/21 AGC AGC AAC AAC AGC AGC AGC
83303 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CAA
122068 CAA * 8 23/24 CAA CAA TAA CAA CAA CAA CAA CAA
126800 ACA * 8 22/24 ACA ACA ACA ACA ACA ACC ATA ACA
175551 TTG * 7 19/21 TTG TTG TTG CTG CTG TTG TTG
179462 AAT * 7 20/21 AAT AAT AAT AAT AAT AAT AAG
198531 AGC * 7 19/21 AGC AGC AGC AAC AAC AGC AGC
198880 GCA * 7 19/21 GCA GCA GCC GCA GCA GCA CCA
198923 CAG * 8 22/24 CAG CAA CAA CAG CAG CAG CAG CAG
210778 CAT * 8 22/24 CAT CGT CAT CAT CAT CAT CAT CCT
-----------------------------------------------------------------------------------------
Total sequence length......................... 252224
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 2 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
GTG 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 2 1 1 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CAC 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 1 TAA + 0 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 1 CAA + 0 GTT + 2 TTG + 0 TGT = 4
0 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
2 AGC + 2 GCA + 2 CAG + 0 GCT + 0 CTG + 2 TGC = 8
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 2 CAC + 0 GGT + 1 GTG + 0 TGG = 3
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7294145|gb|AE003528.1|AE003528 Drosophila melanogaster genomic scaffold 142000013386050 section 15 of 54, complete sequence
Position Repeat Coverage Repeat
13203 CTC * 7 19/21 CTC CTC CTC CAC CTA CTC CTC
43833 TAA * 7 20/21 TAA TAA TAA TAA TAA TAA TAC
47983 CAG * 7 19/21 CAG CAG CAG CAG CAG CTC CAG
81680 TGT * 8 22/24 TGT TGT TGT TGT TGT TGG TTT TGT
82412 GTT * 8 22/24 GTT GTT GCT GTT GCT GTT GTT GTT
88917 CGA * 7 19/21 CGA CTA CGA CGA CGA AGA CGA
90853 GCA * 7 19/21 GCA GCA GCA GCA AGA GCA GCA
91845 TTG * 7 19/21 TTG TTG TTG TTG TTC TTG TTC
92457 GTT * 7 19/21 GTT GTT GTT ATT GTT GTC GTT
93283 TCA * 7 19/21 TCA TCA TCA TCA TCA TCA TTG
96955 TGA * 14 38/42 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGC TGA TGG TGA TAC
99179 TGC * 8 22/24 TGC AGC TGC TGC TGC TGC CGC TGC
99417 CGC * 7 20/21 CGC CGC CGC CGC CGC CGT CGC
100055 CGT * 8 22/24 CGT TGT CGT CGT CAT CGT CGT CGT
112180 GTT * 7 20/21 GTT GTT GTT GTT GTT GTT GTA
115058 GGA * 11 30/33 GGA GGA GGA GGA GGA GAA GGA GCA GGA GGA GCA
124433 CAT * 7 19/21 CAT CAT CAT CAA CTT CAT CAT
125347 CAA * 7 19/21 CAA CGA CAA CAA CAA CAG CAA
128777 CAG * 7 19/21 CAG CAA CTG CAG CAG CAG CAG
130083 CGT * 9 25/27 CGT CGT CGT CGT AGT CGT CGT CGC CGT
130132 GCA * 7 19/21 GCA AGA GCA GCA GCA GCA GCA
151171 GCT * 13 36/39 GCT GAT GAT GCT GCT GCT GCT GCT GCT GCT GCT GCT GAT
155427 AGC * 7 19/21 AGC GGC AGC ATC AGC AGC AGC
155466 AGC * 7 19/21 AGC TGG AGC AGC AGC AGC AGC
155774 CAG * 7 19/21 CAG CAG CAG CAG CCG CAA CAG
162633 GCA * 7 19/21 GCA ACA GCA GCA GCA GCA ACA
187658 GCT * 7 19/21 GCT TCT GCT GCT GCT GTT GCT
187706 TGG * 11 31/33 TGG TAG TGG TGG TGG TGG TGG TGT TGG TGG TGG
187888 TGT * 7 19/21 TGT TGT TGT TGT TGT TGG TAT
223558 CAA * 7 19/21 CAA CAA CAA CAG AAA CAA CAA
228308 TGA * 8 22/24 TGA TGC TGA TGA AGA TGA TGA TGA
236581 AAT * 7 19/21 AAT AAT AAT AAT AAT AAT CAA
237368 TTG * 7 20/21 TTG TTG TTA TTG TTG TTG TTG
238782 TGC * 10 27/30 TGC TGC CGA TGC TGC TGC TGC TGC TGC TGG
238872 TGT * 8 22/24 TGT TGT TGT TGT TGT TGT TGT GGG
238948 TTG * 7 19/21 TTG TTG TTG TTA TTG TTG TTA
240522 CAT * 8 22/24 CAT CAT CAT GAC CAT CAT CAT CAT
245945 ATA * 7 19/21 ATA ATA ATT ATA ATA ATT ATA
251119 CTG * 7 19/21 CTG CTG CTG CTG CTG CTT CTT
275790 AAC * 7 19/21 AAC AAC AAC AGC AAC AGC AAC
277905 TTG * 7 19/21 TTG TTA TTA TTG TTG TTG TTG
282025 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG TTG CAG
283007 GAT * 22 60/66 GAT GAT GAC GGT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAG GAT GAT GAC GAT GAC GAT GAC
-----------------------------------------------------------------------------------------
Total sequence length......................... 283712
Total number of repeats detected.............. 43
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 4 4 0 0 0 0 0 0 0 0 0 0 0
TGA 2 1 0 1 0 0 0 0 0 0 0 0 0
TGT 3 3 0 0 0 0 0 0 0 0 0 0 0
TGG 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 2 1 1 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 0 0 0 0 0 1 0 0 0 0 0 0
GTT 3 3 0 0 0 0 0 0 0 0 0 0 0
GGA 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 3 3 0 0 0 0 0 0 0 0 0 0 0
GCT 2 1 0 1 0 0 0 0 0 0 0 0 0
CAA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 4 4 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CGA 1 1 0 0 0 0 0 0 0 0 0 0 0
CGT 2 2 0 0 0 0 0 0 0 0 0 0 0
CGC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 1 ATA + 1 TAA + 0 ATT + 0 TTA + 0 TAT = 3
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 2 CAA + 3 GTT + 4 TTG + 3 TGT = 13
0 ATG + 2 TGA + 1 GAT + 2 CAT + 0 ATC + 1 TCA = 6
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 2
2 AGC + 3 GCA + 4 CAG + 2 GCT + 1 CTG + 2 TGC = 14
0 ACG + 1 CGA + 0 GAC + 2 CGT + 0 GTC + 0 TCG = 3
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 1 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 1 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7294090|gb|AE003527.1|AE003527 Drosophila melanogaster genomic scaffold 142000013386050 section 14 of 54, complete sequence
Position Repeat Coverage Repeat
38227 ATA * 7 20/21 ATA ATA ATA ATA ATA ATA ATC
58558 TGT * 7 19/21 TGT TGG TGT TGT TGT TGT TGG
65496 TGA * 7 19/21 TGA TGA TGA TGA TGA CGT TGA
95409 AAC * 10 27/30 AAC AAC AAC AAC AAC AAC CAC AAC AAT AAA
97643 TGC * 11 30/33 TGC TGC TGC TGA TGT TGC TGC TGC TGC TGT TGC
103654 CAA * 7 19/21 CAA CAA CAA TAA CAA CAA GAA
106642 GCA * 7 19/21 GCA GCA ACA GCA ACA GCA GCA
128274 GCA * 8 22/24 GCA TCA GCA GCA GCA GCA GCA ACA
128931 GCA * 10 27/30 GCA GCA GCA GCA GCA GCA GCA GCG GTA TCA
129200 AGC * 11 30/33 AGC AGC AGC AAC AGC AAC AGC AGC AGC AAC AGC
129832 GCA * 11 30/33 GCA ACA GCA GCA GCA GCA GCA GCA GCA GCA CCC
133608 GCA * 8 22/24 GCA GCA GCA GCA GCA GCA GCA ACC
140810 AGG * 7 19/21 AGG AGG AGG AGG TGG AGG AGA
143894 CAG * 7 19/21 CAG CAG CAG CGG CAG CGG CAG
145940 ATC * 7 21/21 ATC ATC ATC ATC ATC ATC ATC
146548 ATG * 8 22/24 ATG ATG ATG ATG ATG ATG ACG ACG
148316 AGA * 12 33/36 AGA AGA AGA AGA AGA AGA AGA ATA AGA AGA TCA AGA
173735 AGC * 7 20/21 AGC AGG AGC AGC AGC AGC AGC
174679 ACA * 7 19/21 ACA GCA GCA ACA ACA ACA ACA
248117 TGC * 9 25/27 TGC TTT TGC TGC TGC TGC TGC TGC TGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 279679
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 0 1 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGA 1 0 1 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 1 1 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 1 1 0 0 0 0 0 0 0 0 0 0
GCA 5 3 2 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 1 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 1
1 AAC + 1 ACA + 1 CAA + 0 GTT + 0 TTG + 1 TGT = 4
1 ATG + 1 TGA + 0 GAT + 0 CAT + 1 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 1
2 AGC + 5 GCA + 1 CAG + 0 GCT + 0 CTG + 2 TGC = 10
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7294043|gb|AE003526.1|AE003526 Drosophila melanogaster genomic scaffold 142000013386050 section 13 of 54, complete sequence
Position Repeat Coverage Repeat
13289 TGC * 7 19/21 TGC TGC TGA TGC TGC TGC TGT
13430 TGC * 7 19/21 TGC TGT TGC TGT TGC TGC TGC
32576 TGC * 7 19/21 TGC TGC TGC TGC TAC TAC TGC
55208 ATT * 7 19/21 ATT ATT ATT AAT TTT ATT ATT
76979 ATG * 10 28/30 ATG ATG ATG ATG ATG ATG ATG ATG ATG CGG
95720 CTC * 7 19/21 CTC CTC CTC CTC CTT CTC CTG
155044 TTG * 7 19/21 TTG TTG TTG TTG TAG TTC TTG
156202 TTC * 8 22/24 TTC TTC TTC TTC ATC TTC TTC TCC
163523 AAC * 7 19/21 AAC AAC AAC AAC AAC AAC ATT
170710 CAC * 7 19/21 CAC CAA CAC CAC CAC CCC CAC
172301 CTG * 13 36/39 CTG CGA CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTC
180734 TTG * 7 19/21 TTG TTG TTG TTG CTG TTG TGG
180906 CAG * 7 19/21 CAG CAA CAG TAG CAG CAG CAG
180940 AGC * 8 22/24 AGC AGC AGC AGC AGC AGC AGC AAT
184756 CAG * 7 19/21 CAG CAG CAA CTG CAG CAG CAG
184984 CAA * 7 19/21 CAA CAG CAA CAA CAA CAA CAG
185974 CAG * 7 19/21 CAG CAG CAG AAG CAC CAG CAG
237122 GAC * 8 22/24 GAC TAC GAC GGC GAC GAC GAC GAC
238115 ACA * 7 20/21 ACA ACA ACA ACA ACA GCA ACA
239432 GGA * 7 19/21 GGA GGA GGA GGA GGA GGA ATA
-----------------------------------------------------------------------------------------
Total sequence length......................... 280887
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 0 1 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TTC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 3 3 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 3 3 0 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 0 0 1 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 1 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 1 TTC + 0 TCT = 1
1 AAC + 1 ACA + 1 CAA + 0 GTT + 2 TTG + 0 TGT = 5
1 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 2
1 AGC + 0 GCA + 3 CAG + 0 GCT + 1 CTG + 3 TGC = 8
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7294009|gb|AE003525.1|AE003525 Drosophila melanogaster genomic scaffold 142000013386050 section 12 of 54, complete sequence
Position Repeat Coverage Repeat
11296 CGC * 7 19/21 CGC CGC CGC CGC CGC CGC AGT
18512 CAG * 7 19/21 CAG CAA CAG TAG CAG CAG CAG
19760 CAG * 10 27/30 CAG CAG CAG CAG CAG CAG AAA CAG CAG AAG
32588 CTG * 9 25/27 CTG ATG CAG CTG CTG CTG CTG CTG CTG
35216 CAG * 9 25/27 CAG CAG CTG CAG CAG CAG CAA CAG CAG
47777 CTG * 13 36/39 CTG CTG CTT CTG CTG CTG CTG CTG CTG CTG CTG TTG CTC
53076 GCT * 7 20/21 GCT GCT GCT GCT GCT GCT GAT
55494 TCT * 7 19/21 TCT TGT TCT TCT TCT GCT TCT
80890 GCA * 12 33/36 GCA ACA GCA GCA GCA GCA ACA GCA GCA GCA GCA ACA
80930 CAG * 7 19/21 CAG CAG CAG CAG CAA CAG CAC
81122 CAG * 12 33/36 CAG CAG CAG CAG CAG CAA CAG CAG CAG CAG CAA CAA
81176 CAG * 8 22/24 CAG CAG CAG CAT CAG CAA CAG CAG
92763 ACA * 8 22/24 ACA ACA GCA ACA ACA ACA GCA ACA
92787 GCA * 8 22/24 GCA GCA ACA GCA GCA GCA GCA ACA
93212 ACA * 7 20/21 ACA ACA ACA AAA ACA ACA ACA
93667 ATT * 7 19/21 ATT ATT ATT ACC ATT ATT ATT
120097 GCA * 7 20/21 GCA GCA GCA GCA GCA GCA ACA
146612 CAA * 7 19/21 CAA CAA CAA CAG CAA CAA CCA
155573 TTA * 8 22/24 TTA TTA TTA TTA TTA TTA TTT TTT
177594 TGC * 7 20/21 TGC TGC TGC GGC TGC TGC TGC
182137 TGC * 11 30/33 TGC TGC TGC CGC TGC TGC TGC TGC TGC TAT TGC
196939 GTG * 8 22/24 GTG GTG GTG GTG TTG GTG GTG GTA
203163 TAT * 8 23/24 TAT TAT TAT TAT TAT TAT TAT TTT
235138 TCA * 8 23/24 TCA TCA TCA TTA TCA TCA TCA TCA
247852 AAC * 10 27/30 AAC AAC AAC AAC AAC AAC AAC AAC TGC AAT
250858 CTT * 8 22/24 CTT CTT CTT GCT CTT CTT CTT CTT
265406 TAA * 7 21/21 TAA TAA TAA TAA TAA TAA TAA
277975 TGG * 9 25/27 TGG TGG TGG CGT TGG TGG TGG TGG TGG
278263 GCT * 8 22/24 GCT GGT GCT GGT GCT GCT GCT GCT
290993 TGT * 7 19/21 TGT GGT TGT TGT TGT TGT TGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 291880
Total number of repeats detected.............. 30
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 0 1 0 0 0 0 0 0 0 0 0 0
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 2 2 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 1 1 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
TCT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 3 2 1 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 6 4 2 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 2 1 0 1 0 0 0 0 0 0 0 0 0
CGC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 1 ATT + 1 TTA + 1 TAT = 4
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 1 TCT = 2
1 AAC + 2 ACA + 1 CAA + 0 GTT + 0 TTG + 1 TGT = 5
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 1 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 3 GCA + 6 CAG + 2 GCT + 2 CTG + 2 TGC = 15
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 1 GTG + 1 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 1 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7293975|gb|AE003524.1|AE003524 Drosophila melanogaster genomic scaffold 142000013386050 section 11 of 54, complete sequence
Position Repeat Coverage Repeat
7111 TTG * 8 23/24 TTG TTG TTG GTG TTG TTG TTG TTG
46729 GTT * 7 19/21 GTT GTA GTT GTA GTT GTT GTT
63977 GAT * 7 19/21 GAT GAT GAT GAT GAT AAT AAT
69824 GAG * 7 19/21 GAG GAG GAC GAA GAG GAG GAG
112032 CAG * 7 19/21 CAG CAG CAC CAG CAG CAG CAA
113750 GCA * 7 19/21 GCA ACA ACA GCA GCA GCA GCA
134445 CGT * 7 19/21 CGT CGT CGT CGT CCT CGT CGA
148614 CAG * 7 19/21 CAG CAG CAG CAG CAA CAG CCG
170642 CTT * 7 19/21 CTT CTT CTT CTT CTT CTT TTC
170666 CTT * 8 22/24 CTT GTA CTT CTT CTT CTT CTT CTT
195773 GAT * 7 19/21 GAT GCC GAT GAT GAT GAT GAT
241361 CAG * 7 19/21 CAG CAG CAG AAA CAG CAG CAG
258872 AGC * 7 20/21 AGC AGC AGC AGC AGC AAC AGC
276238 TTA * 10 27/30 TTA TTA TTA TTA TTA TTA TTA TTT TTG TTT
279431 TAT * 10 29/30 TAT AAT TAT TAT TAT TAT TAT TAT TAT TAT
307456 TTA * 8 22/24 TTA TTA TTA TTA TTA TTA TTA TCG
318801 GGT * 8 22/24 GGT GGT GCT GGT GGT GGT GGT GTT
-----------------------------------------------------------------------------------------
Total sequence length......................... 335868
Total number of repeats detected.............. 17
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 0 1 0 0 0 0 0 0 0 0 0 0
TTA 2 1 1 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 2 2 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 3 3 0 0 0 0 0 0 0 0 0 0 0
CTT 2 2 0 0 0 0 0 0 0 0 0 0 0
CGT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 2 TTA + 1 TAT = 3
0 AAG + 0 AGA + 0 GAA + 2 CTT + 0 TTC + 0 TCT = 2
0 AAC + 0 ACA + 0 CAA + 1 GTT + 1 TTG + 0 TGT = 2
0 ATG + 0 TGA + 2 GAT + 0 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 1
1 AGC + 1 GCA + 3 CAG + 0 GCT + 0 CTG + 0 TGC = 5
0 ACG + 0 CGA + 0 GAC + 1 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 1 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7293946|gb|AE003523.1|AE003523 Drosophila melanogaster genomic scaffold 142000013386050 section 10 of 54, complete sequence
Position Repeat Coverage Repeat
38909 ATC * 13 36/39 ATC ATC CCC ATC ATC ATC ATC ATC ATC ATC TTC ATC ATC
39517 ATA * 18 50/54 ATA ATA ACA ATA ATA ATA ACA ATA ATA ATA ATA ATA TTA ATA ATA ATT ATA ATA
46366 ATA * 18 50/54 ATA ATA ACA ATA ATA ATA ACA ATA ATA ATA ATA ATA TTA ATA ATA ATT ATA ATA
113844 CAG * 8 22/24 CAG CAG CAA CAC CAG CAG CAG CAG
114200 GCA * 8 22/24 GCA ACA GCA GCA GCA GCA GCA CCA
114456 CAG * 8 22/24 CAG CAG CAA CAG CAG CAG CAA CAG
135457 TTG * 7 19/21 TTG CTG TTG TTG TTG TTG CTG
135488 TGT * 7 19/21 TGT CGT TGT GGT TGT TGT TGT
161810 TGG * 8 22/24 TGG GGG TGG TGG TGG TGG TGA TGG
163728 CAA * 8 22/24 CAA CAA CAA CAA CAA CAA CAA CTT
165776 GAT * 8 22/24 GAT GAT GAT GAT GAT GAC GAT GGT
165846 TGC * 7 19/21 TGC TGC TGC TGC TTC AGC TGC
175231 ATT * 7 19/21 ATT ATA ATT GTT ATT ATT ATT
176083 CAA * 7 19/21 CAA AAG CAA CAA CAA CAA CAA
177146 TGT * 7 20/21 TGT TGT TGT TGT TGT TGT TGG
177315 GTT * 7 20/21 GTT GCT GTT GTT GTT GTT GTT
179983 CAA * 14 39/42 CAA CAA CAA CAA CAA CAA CAG CAA CAG CAA CAA CAA CAG CAA
181260 TCG * 7 19/21 TCG TCG TTG TCG ACG TCG TCG
184176 CAA * 12 33/36 CAA CAA CAA CGA CAA CAA CAA CAA CAA CAG CAA CGA
184620 TAT * 7 19/21 TAT TAT TAT TAC TAT TAC TAT
186591 AGC * 8 22/24 AGC AGC GGC AGC AGC AGC AGC AAC
202557 GCA * 7 19/21 GCA GCC GCA GCA GCA CCA GCA
204064 GCT * 7 19/21 GCT GCT GCT GCT GTT GCT GCC
208726 TGC * 10 27/30 TGC TGC TGC TGC TGC TGC TGA TGG TGC TGG
212017 GCA * 8 22/24 GCA GCA GCA ACT GCA GCA GCA GCA
212047 GCA * 7 19/21 GCA ACA GCA GCA ACA GCA GCA
212155 GCA * 8 22/24 GCA GCA GCA GCA ACA ACA GCA GCA
212973 GCG * 7 19/21 GCG GCA GCA GCG GCG GCG GCG
213794 CAG * 7 20/21 CAG CAA CAG CAG CAG CAG CAG
215113 GCA * 9 25/27 GCA CCA GCA GCA GCA GCA GCA ACA GCA
215224 GCA * 7 19/21 GCA CCA ACA GCA GCA GCA GCA
216347 TTA * 18 49/54 TTA TTA TTA TTA TTA TTA TTA CTA TTA CTA TTA TTA ATA TTA TAA TTA TTA TTG
223069 CAG * 7 19/21 CAG CAG CCG CAG CAG CAG CCG
248562 CAG * 7 19/21 CAG CAG CAG CAG CAG CAG CTA
273391 CAG * 10 27/30 CAG CAG CAG CAG CAG CAG CAG CGG CAG TTG
276854 ACA * 8 22/24 ACA ACA ACA ACA ACA GCA ACA GCA
281246 GCA * 7 19/21 GCA GCA GCA GCG GCG GCA GCA
-----------------------------------------------------------------------------------------
Total sequence length......................... 283337
Total number of repeats detected.............. 37
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 2 0 0 0 2 0 0 0 0 0 0 0 0
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 0 0 1 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 0 0 0 1 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 2 2 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 1 1 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 8 8 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 4 2 1 1 0 0 0 0 0 0 0 0 0
CAG 6 5 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 2 ATA + 0 TAA + 1 ATT + 1 TTA + 1 TAT = 5
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 4 CAA + 1 GTT + 1 TTG + 2 TGT = 9
0 ATG + 0 TGA + 1 GAT + 0 CAT + 1 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 8 GCA + 6 CAG + 1 GCT + 0 CTG + 2 TGC = 18
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 1 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 1 TGG = 1
0 GGC + 1 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7293918|gb|AE003522.1|AE003522 Drosophila melanogaster genomic scaffold 142000013386050 section 9 of 54, complete sequence
Position Repeat Coverage Repeat
20683 CAG * 7 20/21 CAG CAG CAG CAG CAG CAG CAT
20914 CCA * 7 19/21 CCA CCA CCG CCG CCA CCA CCA
21088 CAG * 11 30/33 CAG CAG CAT CAG CAG CAG CAT CAG CAG CAT CAG
21256 CAG * 7 19/21 CAG CAG CAA CAG CAA CAG CAG
21390 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CGG
30888 TGC * 7 19/21 TGC TGC TGC TGT TGC TGC TGT
30926 CTG * 10 27/30 CTG CTG TTG CTG CTT CTG CTG CTG CTG TTG
43822 AAC * 7 19/21 AAC AAA AAC AAA AAC AAC AAC
68371 GTT * 9 25/27 GTT GTT GTT GTT GCT GTT GTT GTT GTG
78056 TTA * 8 23/24 TTA TTA TTA TTA TTA TTA TTA TTT
82581 GCA * 8 22/24 GCA ACA GCA GCA GCC GCA GCA GCA
93600 GCA * 7 19/21 GCA ACT GCA GCA GCA GCA GCA
93996 GCT * 12 33/36 GCT GCT GCT GCT GCT GCT GCT TCT ACT GTT GCT GCT
103306 CTG * 12 34/36 CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG TTG CAG
105326 CTT * 8 22/24 CTT CTT CTT CTT CTT CTT CTT CGC
109794 GCA * 8 22/24 GCA GCA GCA GCA GCA GCA GCG ACA
110422 GCA * 8 22/24 GCA GCA TCA GCA GCA GCA ACA GCA
110459 CAG * 8 23/24 CAG CAG CAA CAG CAG CAG CAG CAG
110609 CAG * 7 19/21 CAG CAT CAG CAC CAG CAG CAG
110734 GCA * 8 22/24 GCA GCA GCA GCA GCA GCA ACC GCA
110885 CAG * 7 19/21 CAG CAG CAA CAG CAG CAT CAG
111316 GCA * 15 41/45 GCA GCA GCA GCA GCA ACA GCA GCA GCA GCA CCA GCA CCA GCA ACA
116091 TGC * 9 25/27 TGC AGT TGC TGC TGC TGC TGC TGC TGC
116131 GCT * 8 22/24 GCT GTC GCT GCT GCT GCT GCT GCT
117334 TTA * 7 19/21 TTA TTA TTA TTA ATT TTA TTA
126054 CAG * 9 25/27 CAG CAG CAG CAA CAA CAG CAG CAG CAG
129749 GAT * 7 19/21 GAT GAT GAT GAT AAT GGT GAT
156665 AAC * 7 19/21 AAC AAC AAC TAC TAC AAC AAC
208124 CCA * 7 19/21 CCA CCA CCG CCA TCA CCA CCA
208155 CAC * 11 30/33 CAC CAC CAT CAT CAC CAC CAC CAC CAC CAC CTC
208191 CAC * 7 20/21 CAC CGC CAC CAC CAC CAC CAC
-----------------------------------------------------------------------------------------
Total sequence length......................... 290837
Total number of repeats detected.............. 31
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 2 2 0 0 0 0 0 0 0 0 0 0 0
TTA 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 6 5 0 1 0 0 0 0 0 0 0 0 0
GCT 2 1 1 0 0 0 0 0 0 0 0 0 0
CAG 8 7 1 0 0 0 0 0 0 0 0 0 0
CAC 2 1 1 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 2 0 2 0 0 0 0 0 0 0 0 0 0
CCA 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 2 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 1
2 AAC + 0 ACA + 0 CAA + 1 GTT + 0 TTG + 0 TGT = 3
0 ATG + 0 TGA + 1 GAT + 0 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 6 GCA + 8 CAG + 2 GCT + 2 CTG + 2 TGC = 20
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 2 CCA + 2 CAC + 0 GGT + 0 GTG + 0 TGG = 4
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7293901|gb|AE003521.1|AE003521 Drosophila melanogaster genomic scaffold 142000013386050 section 8 of 54, complete sequence
Position Repeat Coverage Repeat
45794 AAT * 7 19/21 AAT AAT AAT TAT ACT AAT AAT
46892 GCA * 7 19/21 GCA ACA ACA GCA GCA GCA GCA
122220 CAC * 8 23/24 CAC CAC TAC CAC CAC CAC CAC CAC
161888 TTG * 7 19/21 TTG TTG TTG TTG TTG CTG CTG
194439 GAG * 7 19/21 GAG GAG GAG AAG GCG GAG GAG
265019 CAA * 8 22/24 CAA AAT CAA CAA CAA CAA CAA CAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 271237
Total number of repeats detected.............. 6
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 1 CAA + 0 GTT + 1 TTG + 0 TGT = 2
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 1
0 AGC + 1 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 1
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7293883|gb|AE003520.1|AE003520 Drosophila melanogaster genomic scaffold 142000013386050 section 7 of 54, complete sequence
Position Repeat Coverage Repeat
12312 TGT * 7 19/21 TGT TGT TGT TCT TGC TGT TGT
21349 AGC * 8 22/24 AGC AGT AGC AGC AGC AGC AGC AGT
21453 AGC * 7 20/21 AGC AGT AGC AGC AGC AGC AGC
93314 TAA * 10 28/30 TAA TAA TAA TAA TAA TAA TAA TAA TAA CTA
106506 AGC * 7 19/21 AGC AGC AAC AAC AGC AGC AGC
106562 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CAA
154234 GAG * 7 20/21 GAG GAG GAG GAG GAG GAG GAC
229430 CAC * 10 28/30 CAC CAC CAA CAC CAC CAC CGC CAC CAC CAC
245831 AAT * 14 38/42 AAT AAT AAT AAT AAT AAT AAT TAT AAT AAT AAT AAT AAT TTA
-----------------------------------------------------------------------------------------
Total sequence length......................... 292222
Total number of repeats detected.............. 9
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 0 0 1 0 0 0 0 0 0 0 0 0
AGC 3 3 0 0 0 0 0 0 0 0 0 0 0
TAA 1 0 1 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAC 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 1 TAA + 0 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 1 TGT = 1
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 1
3 AGC + 0 GCA + 1 CAG + 0 GCT + 0 CTG + 0 TGC = 4
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7293842|gb|AE003519.1|AE003519 Drosophila melanogaster genomic scaffold 142000013386050 section 6 of 54, complete sequence
Position Repeat Coverage Repeat
64724 GGT * 7 20/21 GGT GGT GGT GGC GGT GGT GGT
81780 TAA * 7 19/21 TAA TAA TAA TTA TAA TAA TTA
91322 GGT * 10 27/30 GGT GGT GTT GGT GGT GGT GGT GTT GGT GTT
93773 GGT * 7 19/21 GGT GGT GGT GGT GGT GGT GTG
98968 CAA * 7 19/21 CAA CAA CCA CAG CAA CAA CAA
99672 AAC * 9 25/27 AAC AAC AAC GAC AAC AAC AAC AAC ATC
110074 CAG * 7 19/21 CAG CCG CAG CAG CAG CAT CAG
110113 CAG * 7 19/21 CAG CAG CAG CAG CAG CAT CCG
113620 GAG * 7 19/21 GAG GAG GAG GAT CAG GAG GAG
118822 CAA * 7 19/21 CAA CAA CAA CAA CAA CGG CAA
120710 CAG * 7 20/21 CAG CAG CAG CAG CAG CAG CAA
120848 GCA * 7 19/21 GCA GCA GCA GCA GCA GCA GTT
121057 CAA * 7 19/21 CAA CAA CAA CAA TAA TAA CAA
121082 AAC * 7 19/21 AAC AAT AAC AAT AAC AAC AAC
121669 GCA * 9 26/27 GCA GCA GCA GCA GCA GCA GCA GCA TCA
123963 GCC * 8 22/24 GCC GAC GAC GCC GCC GCC GCC GCC
125961 TTG * 7 19/21 TTG TTA TTG TTA TTG TTG TTG
134852 ATT * 17 48/51 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT TAA
135672 GAC * 7 19/21 GAC GAC GAC GAC GAC GGC GGC
137555 TTG * 7 19/21 TTG TTG TTG TTG CTA TTG TTG
139318 AGC * 7 19/21 AGC AGC AAC AAC AGC AGC AGC
139374 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CAA
155366 GCA * 7 19/21 GCA GCT GGA GCA GCA GCA GCA
155489 CAA * 10 28/30 CAA CAA CAA CAA CAA CAA TAA CAA CGA CAA
155649 CAG * 7 19/21 CAG CAG CAG CAG CAA CAA CAG
155673 CAG * 10 27/30 CAG CAG CAG CAA CAT CAG CAG CAG CAG CAA
155859 GGC * 7 19/21 GGC GGT GGC GGC GGC GGT GGC
160499 TCG * 7 20/21 TCG TTG TCG TCG TCG TCG TCG
161337 TAT * 12 34/36 TAT TAT TAT TAT TAT AGT TAT TAT TAT TAT TAT TAT
246288 CAG * 7 19/21 CAG CAG CAG CAG CAG CAG TCG
253318 GTT * 7 19/21 GTT GTT GTT GTT GTT GCT GGT
253345 GTT * 7 19/21 GTT GTT GTT GTT GTT GCT GCT
253547 TGC * 12 33/36 TGC TGC TGC TGC TGC TGC TGT TGC TGT TGC TGC TGA
253640 TGC * 11 30/33 TGC TGC TGC TGC TGC TGC TGC TGT TGA TGT TGC
257820 TGC * 8 22/24 TGC TAT TGC TGC TGC TGC TGC TGC
268775 ATG * 10 27/30 ATG ATA ATG ATG ATG ATG ATG ATG ATG AGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 276243
Total number of repeats detected.............. 36
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 2 2 0 0 0 0 0 0 0 0 0 0 0
ATT 1 0 0 0 1 0 0 0 0 0 0 0 0
ATG 1 0 1 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 0 1 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 3 1 2 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 2 2 0 0 0 0 0 0 0 0 0 0 0
GGT 3 2 1 0 0 0 0 0 0 0 0 0 0
GGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 3 3 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 4 3 1 0 0 0 0 0 0 0 0 0 0
CAG 7 6 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 1 ATT + 0 TTA + 1 TAT = 3
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
2 AAC + 0 ACA + 4 CAA + 2 GTT + 2 TTG + 0 TGT = 10
1 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 1
1 AGC + 3 GCA + 7 CAG + 0 GCT + 0 CTG + 3 TGC = 14
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 1 TCG = 2
0 ACC + 0 CCA + 0 CAC + 3 GGT + 0 GTG + 0 TGG = 3
1 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7293817|gb|AE003518.1|AE003518 Drosophila melanogaster genomic scaffold 142000013386050 section 5 of 54, complete sequence
Position Repeat Coverage Repeat
34050 ACG * 7 20/21 ACG ACG ACG ACC ACG ACG ACG
40876 GGA * 7 19/21 GGA GGA GGA GGA GGT GGT GGA
41409 CAG * 7 19/21 CAG CAG AAG CAG CAG CAG TAG
55175 CCA * 7 19/21 CCA CCA CCA CCT GCA CCA CCA
74960 ATA * 18 50/54 ATA ATA ACA ATA ATA ATA ACA ATA ATA ATA ATA ATA TTA ATA ATA ATT ATA ATA
81937 ATA * 18 50/54 ATA ATA ACA ATA ATA ATA ACA ATA ATA ATA ATA ATA TTA ATA ATA ATT ATA ATA
88008 GAT * 7 19/21 GAT GAT GAT GGT CAT GAT GAT
89966 ACC * 8 22/24 ACC ACC ACT ACC ATC ACC ACC ACC
123595 TTA * 7 19/21 TTA TTA GTA TTA ATA TTA TTA
144378 AGG * 7 19/21 AGG AGG AGG AGG AGG AGA AAG
179879 GGA * 14 38/42 GGA GGA GGT GGA GGA GGA GGA GGA GGA GGA GGA GGA CGT GGC
182521 CAA * 10 28/30 CAA CAG CAA CAA CAA CAA CAA CAA CAG CAA
189985 AGC * 7 19/21 AGC AGC AGC AGC AGC AGC AAA
192880 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAG CGA
193601 ACA * 8 22/24 ACA ACA ACA ACC ACA ACA ACA GCA
194086 AGC * 7 19/21 AGC AGT CGC AGC AGC AGC AGC
236816 GTT * 7 19/21 GTT GTT GTT ATT GTT GTT GTG
266933 AGT * 9 25/27 AGT AGT AGT AGT GGT AGT AGT AGT AGC
275318 ACG * 7 19/21 ACG ACG ACG ACG ACG ATG AGG
-----------------------------------------------------------------------------------------
Total sequence length......................... 280289
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 2 0 0 0 2 0 0 0 0 0 0 0 0
AGT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 2 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
ACG 2 2 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 2 1 0 1 0 0 0 0 0 0 0 0 0
CAA 1 0 1 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 2 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 3
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 1 CAA + 1 GTT + 0 TTG + 0 TGT = 3
0 ATG + 0 TGA + 1 GAT + 0 CAT + 0 ATC + 0 TCA = 1
1 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 1
1 AGG + 2 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 3
2 AGC + 0 GCA + 2 CAG + 0 GCT + 0 CTG + 0 TGC = 4
2 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 2
1 ACC + 1 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7293794|gb|AE003517.1|AE003517 Drosophila melanogaster genomic scaffold 142000013386050 section 4 of 54, complete sequence
Position Repeat Coverage Repeat
16689 ATG * 9 25/27 ATG ATG ATG ATG ATG ATG ATG CTG TTG
24406 TGC * 7 19/21 TGC TGC TGC TGC TGC TTT TGC
35231 CAG * 8 22/24 CAG CAG AAG CAG CAG CAG TAG CAG
89195 CAG * 7 19/21 CAG CTG CAG CAG CAG CAC CAG
94821 CAA * 14 38/42 CAA CAC AAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAT CAT
140485 TGA * 8 23/24 TGA TGA TGA TGA TGA TGA TGA TGT
176736 TCC * 7 20/21 TCC TCC ACC TCC TCC TCC TCC
249655 TGC * 7 19/21 TGC TGC TGA TGC TGC TGC TGA
256587 AAG * 7 19/21 AAG AAA AAG AAA AAG AAG AAG
-----------------------------------------------------------------------------------------
Total sequence length......................... 257672
Total number of repeats detected.............. 9
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 0 0 1 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
1 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 1
0 AAC + 0 ACA + 1 CAA + 0 GTT + 0 TTG + 0 TGT = 1
1 ATG + 1 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 1 TCC = 1
0 AGC + 0 GCA + 2 CAG + 0 GCT + 0 CTG + 2 TGC = 4
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7293747|gb|AE003516.1|AE003516 Drosophila melanogaster genomic scaffold 142000013386050 section 3 of 54, complete sequence
Position Repeat Coverage Repeat
9227 TAA * 8 22/24 TAA TAA AAA TAA TAA TAA TAA TAC
11483 TCA * 9 25/27 TCA TCA TCA TCA TCA TCA TCA TCA GCG
13774 ATT * 9 25/27 ATT AGG ATT ATT ATT ATT ATT ATT ATT
25500 AGG * 11 30/33 AGG AGG AGG AGG AGG AGG AAG AGA AGG AGG TGG
52062 CAA * 8 23/24 CAA CAT CAA CAA CAA CAA CAA CAA
59264 AGC * 8 22/24 AGC ACC AGC AGC CGC AGC AGC AGC
60062 GCA * 12 33/36 GCA GCA GCA GCA GCA GCA ACA GCA GCA TCA GCA ACA
60968 CAA * 7 19/21 CAA CAA CAA CAA CAG CAA CAG
65393 TGC * 8 22/24 TGC TGC TGT TGC TGC TGC TGC TGT
66914 GTG * 7 19/21 GTG GAG GTG GTG ATG GTG GTG
69317 GCA * 7 19/21 GCA GCA GCA TCA GCA TCA GCA
89106 GCG * 8 23/24 GCG GCG GCG GCA GCG GCG GCG GCG
92494 CTC * 7 19/21 CTC CTC GTC CTC CTC CTG CTC
94729 ACA * 15 42/45 ACA ACA ACA ACA ATA ACA ACA ACA ACA ACA ACA ACA ATA GCA ACA
103937 CTG * 7 19/21 CTG CTG CTG CTG CTG CGG CGG
162506 TGT * 13 36/39 TGT TGC TGT TGT TGT TGT TGT TGT TTT TGT TGT TGC TGT
185787 AGC * 7 19/21 AGC AGC AGC AGC AGC AGC GAC
-----------------------------------------------------------------------------------------
Total sequence length......................... 287649
Total number of repeats detected.............. 17
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 1 0 1 0 0 0 0 0 0 0 0 0 0
AGC 2 2 0 0 0 0 0 0 0 0 0 0 0
ACA 1 0 0 1 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 0 0 1 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 1 1 0 0 0 0 0 0 0 0 0 0
GCG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 2 2 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 1 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 2 CAA + 0 GTT + 0 TTG + 1 TGT = 4
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 1 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 2
2 AGC + 2 GCA + 0 CAG + 0 GCT + 1 CTG + 1 TGC = 6
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 1 GTG + 0 TGG = 1
0 GGC + 1 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7293706|gb|AE003515.1|AE003515 Drosophila melanogaster genomic scaffold 142000013386050 section 2 of 54, complete sequence
Position Repeat Coverage Repeat
25611 AAG * 10 28/30 AAG AAG AAG AAG GAG AAG AGG AAG AAG AAG
67857 TGC * 8 22/24 TGC TGT TGC TGC TGC TGC TGC GGC
131156 GCA * 9 25/27 GCA GCA ACA GCA GCA GCA GCA ACA GCA
132338 CAG * 7 19/21 CAG TAG CAG CAG CAG CAA CAG
132496 GCT * 7 19/21 GCT GCT GCT GCT GCT GCT CCA
132528 TCC * 11 30/33 TCC TCA TCG TCC TCC TCC TCC TCC TCC TCC TCA
146487 GTT * 7 19/21 GTT GTA GTT GTT GTT GTT GTG
146572 GTT * 9 25/27 GTT GTT GTT GTT GTT GTT GTT ATT GCT
155626 CAA * 7 19/21 CAA CAA CAA AAA TAA CAA CAA
157463 CAG * 7 19/21 CAG GAG CAG CAG CAG CAG CAA
159128 GCA * 10 27/30 GCA GCA GCA GCA GCA GCA GCA ACA GCA ATA
159888 GAC * 8 22/24 GAC GAC GAC GAC GAC GAT GAG GAC
162986 ACG * 7 19/21 ACG ACG AAG ACG ACG ACT ACG
163712 GAG * 11 30/33 GAG GAG GAG GAA GAA GAG GAG GAG GAG GAG AAG
194822 AGC * 7 19/21 AGC AGC AAC AAC AGC AGC AGC
194878 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CAA
206850 TGT * 7 19/21 TGT TGC TGT TGT TGT TGT TGC
207089 CTG * 7 19/21 CTG CTG CTG CGG CTG TTG CTG
207994 TGC * 8 22/24 TGC TGC ATC TGC TGC TGC TGC TGC
208360 TGC * 7 19/21 TGC TGC TGT TGT TGC TGC TGC
231609 CCG * 7 19/21 CCG CCG CCG CCA CCG CCG ACG
232631 TGA * 7 19/21 TGA TGA TGA TGA TGG TGA TGG
232899 TGT * 8 22/24 TGT TGT TGT TGT TGT TGT TGC TGC
255093 TGC * 7 19/21 TGC TGC TGC TGC TGC CAC TGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 273521
Total number of repeats detected.............. 24
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAG 1 0 1 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 4 4 0 0 0 0 0 0 0 0 0 0 0
TCC 1 0 1 0 0 0 0 0 0 0 0 0 0
GAG 1 0 1 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCA 2 1 1 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 3 3 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
1 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 1
0 AAC + 0 ACA + 1 CAA + 2 GTT + 0 TTG + 2 TGT = 5
0 ATG + 1 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 1 TCC = 2
1 AGC + 2 GCA + 3 CAG + 1 GCT + 1 CTG + 4 TGC = 12
1 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 2
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 1 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7293659|gb|AE003514.1|AE003514 Drosophila melanogaster genomic scaffold 142000013386050 section 1 of 54, complete sequence
Position Repeat Coverage Repeat
2172 TTG * 7 19/21 TTG TTG TTG TTG TGG TTG TTC
2214 TTG * 7 20/21 TTG TTG ATG TTG TTG TTG TTG
88315 GCA * 7 19/21 GCA ACA GCA GCA GCA GCA ACA
88348 GCA * 7 19/21 GCA GCA GCA ACA GCA GCA GCT
88762 GCA * 8 22/24 GCA GCA ACA GCA GCA GCA GCA GAA
90256 CAG * 8 22/24 CAG CAG CAG CAC CAG CAG CAG CAA
90282 GCA * 7 21/21 GCA GCA GCA GCA GCA GCA GCA
90442 CAA * 7 19/21 CAA CAA CAA CAA CAG CAG CAA
90514 CAG * 8 22/24 CAG CAG CAG CAG GCG CAG CAG CAG
90592 GCA * 7 19/21 GCA GCG GCG GCA GCA GCA GCA
91500 CAA * 8 23/24 CAA CAA CTA CAA CAA CAA CAA CAA
118758 TGG * 8 22/24 TGG TGC TGC TGG TGG TGG TGG TGG
135587 AAC * 27 73/81 AAC AAT AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAT AAT AGC AGT ATA
136963 GCA * 7 19/21 GCA GCA GCA GCA GCA GCG GGA
174537 CAC * 8 22/24 CAC GAC CAA CAC CAC CAC CAC CAC
223130 AGG * 7 19/21 AGG AGG AGG GGG AGG AGG AGT
243283 AGT * 8 23/24 AGT TGT AGT AGT AGT AGT AGT AGT
253484 CCT * 7 19/21 CCT CTT CCT CCT CCT CCC CCT
253901 AGT * 7 19/21 AGT AGT AGT AGT AGT AGT GGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 274668
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 0 0 0 0 0 0 1 0 0 0 0 0
AGT 2 2 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 6 6 0 0 0 0 0 0 0 0 0 0 0
CAA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 2 CAA + 0 GTT + 2 TTG + 0 TGT = 5
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
2 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 2
1 AGG + 0 GGA + 0 GAG + 1 CCT + 0 CTC + 0 TCC = 2
0 AGC + 6 GCA + 2 CAG + 0 GCT + 0 CTG + 0 TGC = 8
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 1 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7289390|gb|AE003204.1|AE003204 Drosophila melanogaster genomic scaffold 142000013385626, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 14074
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289766|gb|AE003242.1|AE003242 Drosophila melanogaster genomic scaffold 142000013385958, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 20950
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7288950|gb|AE002969.1|AE002969 Drosophila melanogaster genomic scaffold 142000013385262, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 19560
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289605|gb|AE002867.1|AE002867 Drosophila melanogaster genomic scaffold 142000013385810, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1179
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289134|gb|AE003115.1|AE003115 Drosophila melanogaster genomic scaffold 142000013385416, complete sequence
Position Repeat Coverage Repeat
1807 TGG * 7 19/21 TGG TGG TGG TGG TGA TGA TGG
-----------------------------------------------------------------------------------------
Total sequence length......................... 3101
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 0
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 1 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7316094|gb|AE002647.1|AE002647 Drosophila melanogaster genomic scaffold 142000013386036, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7296579|gb|AE003599.1|AE003599 Drosophila melanogaster genomic scaffold 142000013386036 section 9 of 9, complete sequence
Position Repeat Coverage Repeat
5767 CTG * 17 46/51 CTG CTG CTG TTG CTG CTG CTG CTG CTG CTG CTG TTG CTG TTG CTG TTG TTG
8534 CTG * 9 26/27 CTG CTG CTG CTG CTG TTG CTG CTG CTG
31368 TGC * 7 20/21 TGC TGT TGC TGC TGC TGC TGC
33640 TTG * 12 34/36 TTG TTG CTG TTA TTG TTG TTG TTG TTG TTG TTG TTG
47928 ATT * 11 30/33 ATT ATT ATT ATT CTT ATT ATT ATT ATT ATA TTT
55035 ATT * 10 28/30 ATT ATT ATT ATT ACT ATA ATT ATT ATT ATT
133657 TAA * 8 22/24 TAA TAG GAA TAA TAA TAA TAA TAA
133706 ATA * 84 227/252 ATA ATA ATA ATA ATA ATA AAA AAA ATA GTA ATA ATA ATA ATT ATA ATA ATA ATA ATA ATA ATA ATA ATT ATA ATA ATA ATA ATT ATA ATT ATT ATA TTA ATT ATA ATA ATA ATA ATT ATA ATA ATA ATA ATT ATA ATA ATA ATA ATT ATA ATA ATA ATA ATT ATA ATA ATA ATA ATT ATA ATA ATA ATA ATT ATA ATA ATA ATA ATT ATA ATA ATA ATA ATT ATA ATA ATA ATA ATA ATG TTA GTA ATT GGT
150904 AAC * 11 30/33 AAC AAT AAC AAC AAC AAC AAC AAC AAC AGT AAC
228279 TCT * 8 22/24 TCT TCT TCT ACT TCT TCC TCT TCT
-----------------------------------------------------------------------------------------
Total sequence length......................... 242396
Total number of repeats detected.............. 10
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 0 1 0 0 0 0 0 0 0 0 0 0
ATA 1 0 0 0 0 0 0 0 0 0 0 0 1
ATT 2 0 2 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 2 1 0 0 1 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 1 TAA + 2 ATT + 0 TTA + 0 TAT = 4
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 1 TCT = 1
1 AAC + 0 ACA + 0 CAA + 0 GTT + 1 TTG + 0 TGT = 2
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 2 CTG + 1 TGC = 3
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7296549|gb|AE003598.1|AE003598 Drosophila melanogaster genomic scaffold 142000013386036 section 8 of 9, complete sequence
Position Repeat Coverage Repeat
27918 ATT * 8 22/24 ATT ATT ATA AGT ATT ATT ATT ATT
49739 CAT * 8 22/24 CAT CAT CAT CAT CAT TGT CAT CAT
93838 CTG * 8 22/24 CTG CTG CTG CAG CTG TTG CTG CTG
93863 TGC * 10 28/30 TGC TGC TGT TGC TGC TGC TGC TGC TGC GGC
94597 GTT * 7 19/21 GTT GTT GTT GTA GTG GTT GTT
203027 GTG * 7 19/21 GTG GTG GTA GTG GTG GTG GCG
204256 GAG * 7 19/21 GAG GAA GAG GAT GAG GAG GAG
204993 TCG * 7 19/21 TCG TCC TCG TCC TCG TCG TCG
206826 CCT * 7 19/21 CCT CCT CCT CAT CCT CTT CCT
211871 AGG * 9 25/27 AGG AGA AGG AAG AGG AGG AGG AGG AGG
259328 ACA * 7 19/21 ACA ACA ACA GCT ACA ACA ACA
260310 GAC * 7 19/21 GAC GAG GAC GAC GAC GAC GAG
278745 TTA * 11 31/33 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TAT
-----------------------------------------------------------------------------------------
Total sequence length......................... 303162
Total number of repeats detected.............. 13
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 1 0 1 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 1 ATT + 1 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 0 CAA + 1 GTT + 0 TTG + 0 TGT = 2
0 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 1 GAG + 1 CCT + 0 CTC + 0 TCC = 3
0 AGC + 0 GCA + 0 CAG + 0 GCT + 1 CTG + 1 TGC = 2
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 1 TCG = 2
0 ACC + 0 CCA + 0 CAC + 0 GGT + 1 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7296525|gb|AE003597.1|AE003597 Drosophila melanogaster genomic scaffold 142000013386036 section 7 of 9, complete sequence
Position Repeat Coverage Repeat
17718 ATT * 9 26/27 ATT ATT ATT ATT ATT GTT ATT ATT ATT
26406 CTG * 12 34/36 CTG CTG CTG CTG CTT CTG CTG CTC CTG CTG CTG CTG
72450 CTC * 15 41/45 CTC CTC CTC CTC CGC CTC CTC CTC CTC CTC CTC GTC CTC CTC GTT
76185 TGC * 11 30/33 TGC TGT TGT TGC TGC TGC TGC TGC TGC TGT TGC
112787 CTC * 8 23/24 CTC ATC CTC CTC CTC CTC CTC CTC
132846 TAA * 7 19/21 TAA TAA TAA TAA TCA CAA TAA
137603 CAA * 27 73/81 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAG CAA CAA CAA CAA CAA CAA CAG CAG CAG CAG CAA CAA GAA CAA ACA
143579 AGC * 7 19/21 AGC AGC AGC AGC AGT AGC GGC
175148 TCA * 7 20/21 TCA TCA TCA TCT TCA TCA TCA
200765 GAC * 8 22/24 GAC GTC GAC GAC GAC GAC GAC GGC
255206 CAG * 7 19/21 CAG AAG CAG CAG CAG GAG CAG
-----------------------------------------------------------------------------------------
Total sequence length......................... 295566
Total number of repeats detected.............. 11
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 0 1 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 0 0 0 0 0 0 1 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 0 1 0 0 0 0 0 0 0 0 0 0
CTC 2 1 0 1 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 1 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 1 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 1 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 2 CTC + 0 TCC = 2
1 AGC + 0 GCA + 1 CAG + 0 GCT + 1 CTG + 1 TGC = 4
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7296506|gb|AE003596.1|AE003596 Drosophila melanogaster genomic scaffold 142000013386036 section 6 of 9, complete sequence
Position Repeat Coverage Repeat
20043 CAG * 12 33/36 CAG CAG CGG CAG CAG CAG CAG CAG CCG CAG AAG CAG
105021 AGG * 7 20/21 AGG AGG AGG AGG AGG AGG AAG
121408 GGA * 10 27/30 GGA GGA GGA GGA GCA GGT GGA GGA GGA GCA
140813 AGC * 10 28/30 AGC AGT GGC AGC AGC AGC AGC AGC AGC AGC
194146 TCC * 7 19/21 TCC TCC TCC TCC TCC TGC TCT
196476 TTG * 8 22/24 TTG TTG TTG TTG TTG TTG TTA TTA
196500 TTA * 11 30/33 TTA TTA TTA TTA TTC TTA TTA TTA TTA TTG TTG
208009 GCA * 12 33/36 GCA GCA GCA GCA CCA CCA GCA GCA GCA GCA GCA CCA
208046 CAG * 8 22/24 CAG CAG CAG CAG CAG CAC CAC CAG
211724 CAA * 7 20/21 CAA CAA CAA CAC CAA CAA CAA
234704 CAC * 8 22/24 CAC CAC CAC CAC CAC CAT CGC CAC
249787 CAT * 8 22/24 CAT CAT CAT CAT CCT CAT CCT CAT
266955 TCA * 10 27/30 TCA TCA TCA TCA TCA TCA TCA CCA CCA TCC
274235 TTG * 8 22/24 TTG TGG TTG TTT TTG TTG TTG TTG
277074 AGG * 7 20/21 AGG AGT AGG AGG AGG AGG AGG
306982 GAT * 7 19/21 GAT GAT GAT GAT GAT GAC GAC
-----------------------------------------------------------------------------------------
Total sequence length......................... 318817
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGG 2 2 0 0 0 0 0 0 0 0 0 0 0
AGC 1 0 1 0 0 0 0 0 0 0 0 0 0
TTA 1 0 1 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TCA 1 0 1 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 1 0 1 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 1 1 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 1 CAA + 0 GTT + 2 TTG + 0 TGT = 3
0 ATG + 0 TGA + 1 GAT + 1 CAT + 0 ATC + 1 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
2 AGG + 1 GGA + 0 GAG + 0 CCT + 0 CTC + 1 TCC = 4
1 AGC + 1 GCA + 2 CAG + 0 GCT + 0 CTG + 0 TGC = 4
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7296463|gb|AE003595.1|AE003595 Drosophila melanogaster genomic scaffold 142000013386036 section 5 of 9, complete sequence
Position Repeat Coverage Repeat
18223 GCA * 8 22/24 GCA GCA GCC GCG GCA GCA GCA GCA
18250 GCA * 8 22/24 GCA GCA GCA GCA GCA GCA GCC GCC
22364 AGG * 8 22/24 AGG AGG AGG AGG AGG ACG AGC AGG
60653 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAG GAT
88584 TGA * 10 27/30 TGA TCA TGA TGA TGA TGA TGA TGT TGA TGG
90623 GGA * 7 19/21 GGA GGA GGA GGA GGA GGT CGA
111833 GTG * 7 19/21 GTG GTG GTG GTA GTG GTA GTG
113929 GGT * 7 19/21 GGT GGC AGT GGT GGT GGT GGT
114474 TGA * 7 20/21 TGA TGA TGA TGA TGA TGA TGG
114551 TGA * 7 19/21 TGA TGA TGA TGA TGA GGA TGT
125600 CAG * 7 19/21 CAG CAG CAG GAT CAG CAG CAG
140018 AAC * 7 19/21 AAC AAC AAC AAC AAC AGG AAC
181862 CTG * 8 22/24 CTG CTG CTG CTG CTG CTG CTT CTC
215403 TTA * 7 21/21 TTA TTA TTA TTA TTA TTA TTA
225516 TGT * 7 19/21 TGT TGT TGT TGT CGA TGT TGT
228283 GCT * 7 19/21 GCT GCA GAT GCT GCT GCT GCT
231684 TAA * 40 108/120 TAA TAA AAA TAA TGA TAA TAA TAA TAA TAT TAA TAA TAA CAA TAA TAA TTA TAA TAA TAA TAA TAA TAA TAA TAA GAA CAA TAA TAA TAA TAA TAA TAA TAT TTA TAA TAT TAA TAT TAT
231835 TAA * 70 190/210 TAA TAA TAA TAT TAA TGA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TTA TAA TAA TAA CCA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA CAG TAC CAA TAC TAA AAA GAA TAA TCA GAT TTA ATC AAA
244466 ACA * 8 22/24 ACA ACA AAA ACA ACA GCA ACA ACA
269167 TAT * 7 19/21 TAT GAT TAT TAT TAT AAT TAT
-----------------------------------------------------------------------------------------
Total sequence length......................... 294257
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 2 0 0 0 0 0 0 0 0 0 0 0 2
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 3 2 1 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 2 TAA + 0 ATT + 1 TTA + 1 TAT = 4
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 1 ACA + 0 CAA + 0 GTT + 0 TTG + 1 TGT = 3
0 ATG + 3 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 1 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 2
0 AGC + 2 GCA + 2 CAG + 1 GCT + 1 CTG + 0 TGC = 6
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 1 GGT + 1 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7296405|gb|AE003594.1|AE003594 Drosophila melanogaster genomic scaffold 142000013386036 section 4 of 9, complete sequence
Position Repeat Coverage Repeat
21824 GCT * 7 19/21 GCT GCT GCT GCA GCT GCC GCT
42378 GTG * 8 22/24 GTG GTG ATG ATG GTG GTG GTG GTG
45454 CCA * 8 23/24 CCA CCA CCA TCA CCA CCA CCA CCA
71932 TTG * 7 20/21 TTG GTG TTG TTG TTG TTG TTG
81892 TTA * 7 20/21 TTA TTA TTA TTA TAA TTA TTA
91126 ATT * 8 22/24 ATT ATT ATT ATT ATT ATT ATG ATA
95264 GTG * 7 20/21 GTG GTG GTG GTG GTG TTG GTG
132290 AAC * 12 35/36 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAA
188280 TGC * 11 30/33 TGC TGC TGC GGC TGC TGC TGC TGC TGC GGT TGC
199764 TGG * 8 22/24 TGG TGA TGA TGG TGG TGG TGG TGG
199980 CCG * 7 19/21 CCG CCA CCG CCG CCG CCT CCG
205533 ATG * 7 20/21 ATG ATG ATG ATG ATG ATG ATT
208375 AAT * 11 31/33 AAT AAT AAT AAT AAT TAT AAT AAT AAT AAT AAA
222002 ATA * 8 22/24 ATA ATA ATA ATA ATA ATA ATA AAT
274901 GCT * 7 19/21 GCT GCT GCT GCT GCA GCT GTT
275307 TTG * 7 19/21 TTG TGG TTG TTG CTG TTG TTG
275769 CTC * 7 19/21 CTC CTC CTC CTC TTC CTC GTC
281742 TGC * 8 22/24 TGC TGC TGC GGC TGC TGG TGC TGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 305516
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 0 1 0 0 0 0 0 0 0 0 0 0
AAC 1 0 1 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 1 1 0 0 0 0 0 0 0 0 0 0
GTG 2 2 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 1 ATA + 0 TAA + 1 ATT + 1 TTA + 0 TAT = 4
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 0 CAA + 0 GTT + 2 TTG + 0 TGT = 3
1 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 1
0 AGC + 0 GCA + 0 CAG + 2 GCT + 0 CTG + 2 TGC = 4
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 1 CCA + 0 CAC + 0 GGT + 2 GTG + 1 TGG = 4
0 GGC + 0 GCG + 0 CGG + 0 GCC + 1 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7296371|gb|AE003593.1|AE003593 Drosophila melanogaster genomic scaffold 142000013386036 section 3 of 9, complete sequence
Position Repeat Coverage Repeat
38421 GTT * 7 20/21 GTT GTT GTT GTT GTT GAT GTT
47406 GCT * 7 19/21 GCT GCT GCT GCG GCT GCC GCT
51361 GCT * 7 19/21 GCT GCT GCT GCT GTT GCT GCA
51414 GAC * 11 30/33 GAC GAC GAC GAC GAC GAC GAC GAC GAT GAT GAA
93092 TCA * 7 19/21 TCA TCA TCG TCA TCA TCA TCT
96851 AAC * 9 25/27 AAC AAC AAC AAC AAC AAC AAC AAG AAA
111861 CAC * 10 27/30 CAC CAC CAC CAC CAC CAC CAC CAG CTC CAT
116353 CAG * 7 19/21 CAG CAG CAG CAA CAG CAG CAC
116571 GCA * 7 19/21 GCA GCA CCA GCA ACA GCA GCA
120078 AGC * 7 19/21 AGC AGC ATG AGC AGC AGC AGC
123680 GCC * 7 19/21 GCC ACC GCT GCC GCC GCC GCC
138548 TGC * 14 40/42 TGC TGC TGT TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGT
154678 GAT * 8 22/24 GAT GAT GAT GAT GCG GAT GAT GAT
155730 CTG * 7 19/21 CTG CTG CTG CTG CTG CTG CAA
157325 CAA * 10 28/30 CAA TAG CAA CAA CAA CAA CAA CAA CAA CAA
190916 AAT * 7 19/21 AAT AAT AAT AAA AAA AAT AAT
223933 AAG * 7 19/21 AAG AGG AAG AAG AAG AAG CAG
232791 CTG * 8 22/24 CTG CTG CTG TTG TTG CTG CTG CTG
232825 TGC * 8 22/24 TGC TGC TGT TGC TGC TGC TGC AGC
239172 TGA * 10 27/30 TGA TGA TGG TGA TGA TGA TGA CGA TGA TGT
239694 CAG * 8 22/24 CAG CAG GAG CAG CAG TAG CAG CAG
250111 GTT * 7 19/21 GTT GCT GTT GTT GTT GTT GCT
250698 AAC * 7 19/21 AAC AAC AGC AAC AAC AGC AAC
268602 TGC * 10 27/30 TGC TGC TGC CGC TGC TGC TTC TGC TGC TGT
275120 GAA * 7 19/21 GAA GAA GAA GGC GAA GAA GAA
275303 CAG * 8 22/24 CAG CAG CAT CAG CAG CAG AAG CAG
275450 CAG * 7 19/21 CAG CAG CAG CAG CAA CGG CAG
275489 CAG * 8 22/24 CAG CAA CAG CAG CAG CAG CAG CAA
278355 CAG * 7 19/21 CAG CTG CAA CAG CAG CAG CAG
278429 CAG * 8 22/24 CAG CAG CAG CAG CAA CGG CAG CAG
281841 CAA * 10 28/30 CAA CAA CAA CAA CAA CAG CAA CAA CAT CAA
284867 CAG * 8 22/24 CAG CAG AAA CAG CAG CAG CAG CAG
287405 CAG * 7 19/21 CAG CAG CAG CAG CAA CAT CAG
304221 ATG * 7 20/21 ATG ACG ATG ATG ATG ATG ATG
310501 CAG * 7 19/21 CAG CAG CAG CAG CAA CAG CAT
310528 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 313115
Total number of repeats detected.............. 36
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 2 2 0 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 3 1 1 1 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 0 1 0 0 0 0 0 0 0 0 0 0
GTT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 2 0 2 0 0 0 0 0 0 0 0 0 0
CAG 11 11 0 0 0 0 0 0 0 0 0 0 0
CAC 1 0 1 0 0 0 0 0 0 0 0 0 0
CTG 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
1 AAG + 0 AGA + 1 GAA + 0 CTT + 0 TTC + 0 TCT = 2
2 AAC + 0 ACA + 2 CAA + 2 GTT + 0 TTG + 0 TGT = 6
1 ATG + 1 TGA + 1 GAT + 0 CAT + 0 ATC + 1 TCA = 4
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 1 GCA + 11 CAG + 2 GCT + 2 CTG + 3 TGC = 20
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7296338|gb|AE003592.1|AE003592 Drosophila melanogaster genomic scaffold 142000013386036 section 2 of 9, complete sequence
Position Repeat Coverage Repeat
35722 CAA * 7 19/21 CAA TAA CAA CAA CAA CAA CAC
59198 TGA * 7 19/21 TGA TGA TGA TGA TGA TGC TGC
64830 CTG * 10 27/30 CTG CTG CTG CTG CTG CTG CTG ATG ATG GTG
94025 ATC * 9 25/27 ATC ATC ATC GTC ATC ATC ATC ATC GTC
100845 TTA * 7 19/21 TTA TTA TTA TTA TTA TTT TTT
105318 TGC * 7 19/21 TGC TGC TGC TGT TGC TGC TGG
179356 CTG * 7 19/21 CTG CTG CTG CTG CTG CCA CTG
224902 TGC * 8 22/24 TGC TGC TGC TGC TGT TGC TGT TGC
228781 CAG * 7 19/21 CAG CAG CAG GAG CAG GAG CAG
230177 CTG * 7 19/21 CTG GTG CTG CTG TTG CTG CTG
266793 TCC * 7 19/21 TCC TCC TCA TCC TCC TTC TCC
276007 GGA * 8 22/24 GGA GGA GGA GGA GGA GGA GGT GGT
303752 AGC * 12 33/36 AGC AGC AGC AGC AGC AGC AGC AGC GGC AAC AGC AAC
305757 GCC * 11 31/33 GCC GCC GCC GCC GCC GCC GCC GCC GCC GCC ACA
316249 ACA * 10 28/30 ACA ACA ACA ACA ACA ACA ACA ACA GCA GCA
316580 CAT * 8 23/24 CAT CAT CAT CAT CAT CAT CAT CGT
-----------------------------------------------------------------------------------------
Total sequence length......................... 322667
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 0 1 0 0 0 0 0 0 0 0 0 0
ACA 1 0 1 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCC 1 0 1 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 3 2 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 1 CAA + 0 GTT + 0 TTG + 0 TGT = 2
0 ATG + 1 TGA + 0 GAT + 1 CAT + 1 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 0 GAG + 0 CCT + 0 CTC + 1 TCC = 2
1 AGC + 0 GCA + 1 CAG + 0 GCT + 3 CTG + 2 TGC = 7
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7296281|gb|AE003591.1|AE003591 Drosophila melanogaster genomic scaffold 142000013386036 section 1 of 9, complete sequence
Position Repeat Coverage Repeat
67354 GCC * 8 23/24 GCC GCC GCC GCC GCC GCC TCC GCC
69589 AGC * 8 22/24 AGC AAC AAC AGC AGC AGC AGC AGC
77872 TCG * 8 22/24 TCG TCA TCA TCG TCG TCG TCG TCG
142222 TTG * 8 22/24 TTG TTG TTG TTG TTG TTG TTG GCG
162259 TTA * 10 28/30 TTA TTG TTA TTA TTA TTA TTA TTA TTA TTC
179628 AGC * 9 25/27 AGC AGC CGC AGC AAC AGC AGC AGC AGC
238402 AAC * 7 19/21 AAC AAC AAC TAA AAC AAC AAC
243997 GAT * 7 20/21 GAT GAT GAT GAT GAT GGT GAT
252750 CGT * 7 19/21 CGT CGT CGT CGT CGT CAT CAT
252873 GAT * 7 19/21 GAT GGT GAT GAT GAT GGT GAT
267262 TAT * 11 30/33 TAT TAT TAT TAT TAT TAT TAT TGT TAT TGT TGT
268279 CTC * 10 28/30 CTC CTC CTC CTC CTC CTC CTC CTC CTC CCG
268736 CTG * 7 19/21 CTG CTG CTG CTG CTC CTG CAG
269576 TGC * 7 20/21 TGC TGT TGC TGC TGC TGC TGC
277659 TGT * 8 22/24 TGT TGT TGT TGT TGT GGC TGT TGT
292792 AAT * 7 19/21 AAT AAT ACA AAT AAT AAT AAT
-----------------------------------------------------------------------------------------
Total sequence length......................... 297877
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TAT 1 0 1 0 0 0 0 0 0 0 0 0 0
TTA 1 0 1 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 0 1 0 0 0 0 0 0 0 0 0 0
CGT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 1 TAT = 3
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 0 CAA + 0 GTT + 1 TTG + 1 TGT = 3
0 ATG + 0 TGA + 2 GAT + 0 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 1
2 AGC + 0 GCA + 0 CAG + 0 GCT + 1 CTG + 1 TGC = 4
0 ACG + 0 CGA + 0 GAC + 1 CGT + 0 GTC + 1 TCG = 2
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7289763|gb|AE002698.1|AE002698 Drosophila melanogaster genomic scaffold 142000013385955, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 3074
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289744|gb|AE002786.1|AE002786 Drosophila melanogaster genomic scaffold 142000013385942, complete sequence
Position Repeat Coverage Repeat
31163 AAT * 7 19/21 AAT AAT AAT AAT AAT AAT CGT
-----------------------------------------------------------------------------------------
Total sequence length......................... 46468
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 0
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7289859|gb|AE002656.1|AE002656 Drosophila melanogaster genomic scaffold 142000013386032, complete sequence
Position Repeat Coverage Repeat
157609 GTT * 7 19/21 GTT GTT GTT GGT GTT GCT GTT
191672 TTA * 7 19/21 TTA TTG TTA TTA TTA TTA TTT
-----------------------------------------------------------------------------------------
Total sequence length......................... 192318
Total number of repeats detected.............. 2
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 1 GTT + 0 TTG + 0 TGT = 1
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 0
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7289180|gb|AE002893.1|AE002893 Drosophila melanogaster genomic scaffold 142000013385459, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 12718
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289879|gb|AE002612.1|AE002612 Drosophila melanogaster genomic scaffold 142000013386048, complete sequence
Position Repeat Coverage Repeat
41269 GAA * 7 19/21 GAA GAA GAG GAA GAA GAT GAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 62039
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 1 GAA + 0 CTT + 0 TTC + 0 TCT = 1
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 0
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7288924|gb|AE002622.1|AE002622 Drosophila melanogaster genomic scaffold 142000013385237, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 19569
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7288927|gb|AE002700.1|AE002700 Drosophila melanogaster genomic scaffold 142000013385240, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 27887
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289063|gb|AE002771.1|AE002771 Drosophila melanogaster genomic scaffold 142000013385352, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 12661
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289072|gb|AE002945.1|AE002945 Drosophila melanogaster genomic scaffold 142000013385361, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 24781
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289452|gb|AE002985.1|AE002985 Drosophila melanogaster genomic scaffold 142000013385679, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 14450
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289817|gb|AE003107.1|AE003107 Drosophila melanogaster genomic scaffold 142000013386005, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 3855
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289498|gb|AE003116.1|AE003116 Drosophila melanogaster genomic scaffold 142000013385716, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 47681
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289428|gb|AE003123.1|AE003123 Drosophila melanogaster genomic scaffold 142000013385660, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1928
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289557|gb|AE003131.1|AE003131 Drosophila melanogaster genomic scaffold 142000013385771, complete sequence
Position Repeat Coverage Repeat
5236 CTT * 7 19/21 CTT CAT CTT CTT CCT CTT CTT
-----------------------------------------------------------------------------------------
Total sequence length......................... 18252
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 1
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 0
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7289011|gb|AE003041.1|AE003041 Drosophila melanogaster genomic scaffold 142000013385314, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 20379
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289447|gb|AE002665.1|AE002665 Drosophila melanogaster genomic scaffold 142000013385677, complete sequence
Position Repeat Coverage Repeat
80824 TTA * 7 19/21 TTA TTA TTT TTA TTA TTA TTT
-----------------------------------------------------------------------------------------
Total sequence length......................... 111329
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 0
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7289124|gb|AE002673.1|AE002673 Drosophila melanogaster genomic scaffold 142000013385408, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 11578
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7288933|gb|AE002585.1|AE002585 Drosophila melanogaster genomic scaffold 142000013385245, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 3866
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7288940|gb|AE002772.1|AE002772 Drosophila melanogaster genomic scaffold 142000013385252, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 17099
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289795|gb|AE003009.1|AE003009 Drosophila melanogaster genomic scaffold 142000013385983, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 5331
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289101|gb|AE003147.1|AE003147 Drosophila melanogaster genomic scaffold 142000013385388, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 12069
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7288946|gb|AE003235.1|AE003235 Drosophila melanogaster genomic scaffold 142000013385258, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 15690
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289104|gb|AE003139.1|AE003139 Drosophila melanogaster genomic scaffold 142000013385390, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 53962
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
-----------------------------------------------------------------------------------------
Tri-nucleotide repeats in Drosophila melanogaster Chromosome-Arm-3L Genomic Scaffolds
Minimum tri-nucleotide repeating units = 7 (allowing maximum of 10% mismatch)
Total 111 sequences searched with a total of 23674253 bp length
Total 1963 repeats covering 44976 / 49026 base pairs
Length distribution of all tri-nucleotide repeats
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
no. of repeat-units 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 >=40
total repeats 994 499 92 152 99 48 14 21 16 4 4 11 0 1 1 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 3
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Length distribution of all tri-nucleotide repeats
No. of repeat units> 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
total repeats--> 1585 299 51 19 2 2 2 0 0 0 0 3
AAT 31 5 1 0 0 0 0 0 0 0 0 0
AAG 6 3 0 0 0 0 0 0 0 0 0 0
AAC 46 10 0 0 0 0 1 0 0 0 0 0
ATA 17 1 1 6 0 0 0 0 0 0 0 1
ATT 25 3 0 1 0 0 0 0 0 0 0 0
ATG 22 8 0 0 1 0 0 0 0 0 0 0
ATC 16 0 1 0 0 0 0 0 0 0 0 0
AGA 2 1 0 0 0 0 0 0 0 0 0 0
AGT 8 1 0 0 0 0 0 0 0 0 0 0
AGG 13 3 0 0 0 0 0 0 0 0 0 0
AGC 66 17 2 1 0 0 0 0 0 0 0 0
ACA 54 3 2 0 0 1 0 0 0 0 0 0
ACT 3 0 0 0 0 0 0 0 0 0 0 0
ACG 5 1 0 0 0 0 0 0 0 0 0 0
ACC 5 0 0 0 0 0 0 0 0 0 0 0
TAA 22 3 0 0 0 0 0 0 0 0 0 2
TAT 15 3 0 0 0 0 0 0 0 0 0 0
TAG 2 0 0 0 0 0 0 0 0 0 0 0
TAC 0 1 0 0 0 0 0 0 0 0 0 0
TTA 27 6 0 1 0 0 0 0 0 0 0 0
TTG 52 7 1 2 0 0 0 0 0 0 0 0
TTC 3 0 0 0 0 0 0 0 0 0 0 0
TGA 19 8 1 0 0 0 0 0 0 0 0 0
TGT 66 6 3 0 0 0 0 0 0 0 0 0
TGG 13 4 1 1 0 0 0 0 0 0 0 0
TGC 143 43 7 3 0 0 0 0 0 0 0 0
TCA 26 6 0 0 0 0 0 0 0 0 0 0
TCT 7 0 0 0 0 0 0 0 0 0 0 0
TCG 13 0 0 0 0 0 0 0 0 0 0 0
TCC 13 3 0 0 0 0 0 0 0 0 0 0
GAA 6 1 0 0 0 0 0 0 0 0 0 0
GAT 31 6 1 0 0 1 0 0 0 0 0 0
GAG 19 3 0 0 0 0 0 0 0 0 0 0
GAC 15 2 0 0 0 0 0 0 0 0 0 0
GTA 3 0 0 0 0 0 0 0 0 0 0 0
GTT 37 4 0 0 0 0 0 0 0 0 0 0
GTG 15 2 0 0 0 0 0 0 0 0 0 0
GTC 6 0 1 0 0 0 0 0 0 0 0 0
GGA 13 4 1 0 0 0 0 0 0 0 0 0
GGT 19 2 0 0 0 0 0 0 0 0 0 0
GGC 4 0 0 0 0 0 0 0 0 0 0 0
GCA 126 30 7 0 1 0 0 0 0 0 0 0
GCT 60 9 4 0 0 0 0 0 0 0 0 0
GCG 7 0 0 0 0 0 0 0 0 0 0 0
GCC 14 2 0 0 0 0 0 0 0 0 0 0
CAA 74 15 3 0 0 0 1 0 0 0 0 0
CAT 27 6 3 0 0 0 0 0 0 0 0 0
CAG 186 40 2 2 0 0 0 0 0 0 0 0
CAC 18 3 0 1 0 0 0 0 0 0 0 0
CTA 3 0 0 0 0 0 0 0 0 0 0 0
CTT 13 1 0 0 0 0 0 0 0 0 0 0
CTG 74 18 7 1 0 0 0 0 0 0 0 0
CTC 18 1 1 0 0 0 0 0 0 0 0 0
CGA 3 0 0 0 0 0 0 0 0 0 0 0
CGT 7 0 1 0 0 0 0 0 0 0 0 0
CGG 2 0 0 0 0 0 0 0 0 0 0 0
CGC 5 0 0 0 0 0 0 0 0 0 0 0
CCA 19 2 0 0 0 0 0 0 0 0 0 0
CCT 15 2 0 0 0 0 0 0 0 0 0 0
CCG 6 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------------------------------------
-----------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes in all sequences
37 AAT + 26 ATA + 27 TAA + 29 ATT + 34 TTA + 18 TAT = 171
9 AAG + 3 AGA + 7 GAA + 14 CTT + 3 TTC + 7 TCT = 43
57 AAC + 60 ACA + 93 CAA + 41 GTT + 62 TTG + 75 TGT = 388
31 ATG + 28 TGA + 39 GAT + 36 CAT + 17 ATC + 32 TCA = 183
9 AGT + 3 GTA + 2 TAG + 3 ACT + 3 CTA + 1 TAC = 21
16 AGG + 18 GGA + 22 GAG + 17 CCT + 20 CTC + 16 TCC = 109
86 AGC + 164 GCA + 230 CAG + 73 GCT + 100 CTG + 196 TGC = 849
6 ACG + 3 CGA + 17 GAC + 8 CGT + 7 GTC + 13 TCG = 54
5 ACC + 21 CCA + 22 CAC + 21 GGT + 17 GTG + 19 TGG = 105
4 GGC + 7 GCG + 2 CGG + 16 GCC + 6 CCG + 5 CGC = 40
-----------------------------------------------------------------------------------------
Frequency distribution of repeats longer than 40 bp
1 AAT + 8 ATA + 2 TAA + 1 ATT + 1 TTA + 0 TAT = 13
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 2 ACA + 4 CAA + 0 GTT + 3 TTG + 1 TGT = 11
1 ATG + 1 TGA + 1 GAT + 3 CAT + 0 ATC + 0 TCA = 6
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 2
2 AGC + 8 GCA + 4 CAG + 2 GCT + 4 CTG + 9 TGC = 29
0 ACG + 0 CGA + 0 GAC + 1 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 2 TGG = 3
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Total repeats longer than 40 bp = 65
-----------------------------------------------------------------------------------------
Sequence-wise distribution of tri-nucleotide repeats
-----------------------------------------------------------------------------------------
Sequence Sequence-length Total-repeats
gi|7316100|gb|AE0025 0 0
gi|7292550|gb|AE0034 175489 12
gi|7292521|gb|AE0034 301682 33
gi|7292481|gb|AE0034 319765 30
gi|7292415|gb|AE0034 310450 18
gi|7292381|gb|AE0034 309883 48
gi|7292360|gb|AE0034 317218 35
gi|7292303|gb|AE0034 304734 17
gi|7292275|gb|AE0034 306945 42
gi|7292236|gb|AE0034 304231 34
gi|7292198|gb|AE0034 306364 12
gi|7292168|gb|AE0034 304106 15
gi|7292093|gb|AE0034 303191 18
gi|7292041|gb|AE0034 301109 16
gi|7292017|gb|AE0034 302423 26
gi|7291982|gb|AE0034 301868 26
gi|7291959|gb|AE0034 310120 20
gi|7291904|gb|AE0034 298644 6
gi|7316103|gb|AE0026 0 0
gi|7295475|gb|AE0035 104808 5
gi|7295459|gb|AE0035 286716 26
gi|7295423|gb|AE0035 286782 35
gi|7295378|gb|AE0035 301840 44
gi|7295346|gb|AE0035 277325 18
gi|7295332|gb|AE0035 249584 12
gi|7295317|gb|AE0035 274307 52
gi|7295278|gb|AE0035 285495 18
gi|7295229|gb|AE0035 269454 17
gi|7295193|gb|AE0035 273744 15
gi|7295172|gb|AE0035 286418 44
gi|7295117|gb|AE0035 281146 25
gi|7295064|gb|AE0035 281936 36
gi|7295028|gb|AE0035 285729 26
gi|7294982|gb|AE0035 287145 37
gi|7294927|gb|AE0035 286784 35
gi|7294877|gb|AE0035 285978 25
gi|7294844|gb|AE0035 298675 32
gi|7294827|gb|AE0035 300477 22
gi|7294819|gb|AE0035 244249 36
gi|7294792|gb|AE0035 281396 59
gi|7294749|gb|AE0035 281602 50
gi|7294729|gb|AE0035 281893 26
gi|7294680|gb|AE0035 281869 36
gi|7294631|gb|AE0035 284386 5
gi|7294592|gb|AE0035 289887 23
gi|7294556|gb|AE0035 265547 27
gi|7294528|gb|AE0035 297385 37
gi|7294496|gb|AE0035 271729 14
gi|7294470|gb|AE0035 303715 26
gi|7294453|gb|AE0035 280570 35
gi|7294412|gb|AE0035 341639 39
gi|7294397|gb|AE0035 278748 16
gi|7294375|gb|AE0035 280061 9
gi|7294349|gb|AE0035 275076 28
gi|7294302|gb|AE0035 295377 12
gi|7294291|gb|AE0035 274277 20
gi|7294232|gb|AE0035 279136 15
gi|7294198|gb|AE0035 252224 18
gi|7294145|gb|AE0035 283712 43
gi|7294090|gb|AE0035 279679 20
gi|7294043|gb|AE0035 280887 20
gi|7294009|gb|AE0035 291880 30
gi|7293975|gb|AE0035 335868 17
gi|7293946|gb|AE0035 283337 37
gi|7293918|gb|AE0035 290837 31
gi|7293901|gb|AE0035 271237 6
gi|7293883|gb|AE0035 292222 9
gi|7293842|gb|AE0035 276243 36
gi|7293817|gb|AE0035 280289 19
gi|7293794|gb|AE0035 257672 9
gi|7293747|gb|AE0035 287649 17
gi|7293706|gb|AE0035 273521 24
gi|7293659|gb|AE0035 274668 19
gi|7289390|gb|AE0032 14074 0
gi|7289766|gb|AE0032 20950 0
gi|7288950|gb|AE0029 19560 0
gi|7289605|gb|AE0028 1179 0
gi|7289134|gb|AE0031 3101 1
gi|7316094|gb|AE0026 0 0
gi|7296579|gb|AE0035 242396 10
gi|7296549|gb|AE0035 303162 13
gi|7296525|gb|AE0035 295566 11
gi|7296506|gb|AE0035 318817 16
gi|7296463|gb|AE0035 294257 20
gi|7296405|gb|AE0035 305516 18
gi|7296371|gb|AE0035 313115 36
gi|7296338|gb|AE0035 322667 16
gi|7296281|gb|AE0035 297877 16
gi|7289763|gb|AE0026 3074 0
gi|7289744|gb|AE0027 46468 1
gi|7289859|gb|AE0026 192318 2
gi|7289180|gb|AE0028 12718 0
gi|7289879|gb|AE0026 62039 1
gi|7288924|gb|AE0026 19569 0
gi|7288927|gb|AE0027 27887 0
gi|7289063|gb|AE0027 12661 0
gi|7289072|gb|AE0029 24781 0
gi|7289452|gb|AE0029 14450 0
gi|7289817|gb|AE0031 3855 0
gi|7289498|gb|AE0031 47681 0
gi|7289428|gb|AE0031 1928 0
gi|7289557|gb|AE0031 18252 1
gi|7289011|gb|AE0030 20379 0
gi|7289447|gb|AE0026 111329 1
gi|7289124|gb|AE0026 11578 0
gi|7288933|gb|AE0025 3866 0
gi|7288940|gb|AE0027 17099 0
gi|7289795|gb|AE0030 5331 0
gi|7289101|gb|AE0031 12069 0
gi|7288946|gb|AE0032 15690 0
gi|7289104|gb|AE0031 53962 0
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© Division of Biochemical Sciences, National Chemical Laboratory, Pune 411008, INDIA