Tri-Nucleotide Repeats in Genomic Sequences Tri-Nucleotide Repeats in
Drosophila melanogaster Chromosome-Arm-3L Genomic Scaffolds


Genomic sequence
gi|7316100|gb|AE002584.1|AE002584 Drosophila melanogaster genomic scaffold 142000013386045, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       0 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7292550|gb|AE003483.1|AE003483 Drosophila melanogaster genomic scaffold 142000013386045 section 17 of 17, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     1586  GTG *  7    19/21     GTG GTG GCG GTG GTG GTG GGG
     3478  GGT *  7    19/21     GGT GGA AGT GGT GGT GGT GGT
    31586  CAG *  7    19/21     CAG CAC CAG CAG CAG CGG CAG
    32182  CAT *  8    22/24     CAT CAT CAT CAT CAT CAG AAT CAT
    86743  TGC *  7    19/21     TGC TGC CGC TGC TGC AGC TGC
    88482  GGT *  8    22/24     GGT GGG GGT GGT GGT TGT GGT GGT
   124266  GAC *  8    22/24     GAC GAG GAC GAG GAC GAC GAC GAC
   138449  CAG *  9    25/27     CAG CAG CAG CAG CAG CAG GAG CAA CAG
   159057  AGC *  7    19/21     AGC AGC AGC AGC AGC CAC AGC
   159200  TGC *  7    19/21     TGC TGT TGC TGC TGC TCC TGC
   159494  GCC *  7    19/21     GCC GTT GCC GCC GCC GCC GCC
   167767  ACA *  7    19/21     ACA ACA ACA ACA ACA ACA GAA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       175489 
 Total number of repeats detected..............       12 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      2       2       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    1 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    1 
   0 ATG +    0 TGA +   0 GAT +   1 CAT +   0 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   1 AGC +    0 GCA +   2 CAG +   0 GCT +   0 CTG +    2 TGC      =    5 
   0 ACG +    0 CGA +   1 GAC +   0 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   2 GGT +   1 GTG +    0 TGG      =    3 
   0 GGC +    0 GCG +   0 CGG +   1 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7292521|gb|AE003482.1|AE003482 Drosophila melanogaster genomic scaffold 142000013386045 section 16 of 17, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     2614  CAA *  7    19/21     CAA CAA CAA CAG TAA CAA CAA
     3699  CTG * 12    33/36     CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTT TGG
    12222  TGC *  8    24/24     TGC TGC TGC TGC TGC TGC TGC TGC
    12429  AGC *  9    25/27     AGC AGA AGT AGC AGC AGC AGC AGC AGC
    16701  CCT *  8    22/24     CCT CAT CCT CCT CCT CTT CCT CCT
    42344  GCA *  8    23/24     GCA GCG GCA GCA GCA GCA GCA GCA
    45684  TGC *  8    22/24     TGC TGC CGC TGC TGC TGC TGT TGC
    46181  TGA *  8    22/24     TGA TGA TGA TGA TGA TGA TGC CGA
    46265  AGA *  7    19/21     AGA AGA AGA AGA AGA AGC AGC
    49932  CAT *  7    19/21     CAT CAT CGT CCT CAT CAT CAT
    52289  ACA * 11    30/33     ACA CCA AGA ACA ACA ACA ACA ACA ACA ACA ATA
    78977  GCA *  7    19/21     GCA GAA GCA GTA GCA GCA GCA
    93263  CCT *  8    22/24     CCT CCT CCT CCT CCT CCT CCT TTT
    93603  TCA * 10    27/30     TCA TCT TCA TCG TCA TCA TCA TCA TCA CCA
   101283  GCA *  7    19/21     GCA AGA GCA GCA GCA GCA GCA
   103514  GCA *  8    22/24     GCA GCA GCA GCA GCA GCA ACA TCA
   103748  CAG *  8    22/24     CAG CAG CAG CAG CAG CAG CAA CTG
   105267  AGC * 12    33/36     AGC TGC AGC AGC AGC AGC AGC AGC AGC AGC AAC AGG
   121641  GAT * 10    27/30     GAT GAT TAT AAT GAT GAT GAT GAT GAT GAG
   131610  ACA *  7    19/21     ACA ACA AGA GCA ACA ACA ACA
   138564  GCA *  7    19/21     GCA GCA GCA CCA GCA GCA GCT
   140278  GCA *  7    19/21     GCA ACA GCA ACA GCA GCA GCA
   140303  CAG *  8    22/24     CAG CAG CAT CAG CAG CAG CAG CAT
   142283  GAG * 10    27/30     GAG GAG GAG GAG GAG GAG GAG GAG CAA CAG
   162719  CAG *  7    19/21     CAG CAG CGG CAA CAG CAG CAG
   167415  ACA *  9    25/27     ACA ACT ACA ACA ACA ACA AAA ACA ACA
   176341  GAG *  7    19/21     GAG GAG GAG GAG GAG ACG GAG
   206292  TGC *  8    22/24     TGC TGC TGC TGA TGC TGC TGC GGC
   206448  TGT *  9    25/27     TGT TGT TGT TGC AGT TGT TGT TGT TGT
   231580  AGC *  7    19/21     AGC AGC AGC AGC AGG AGC TGC
   243607  ATT *  7    19/21     ATT ATT ATT ATT ATT ATT CAT
   247889  ACA *  8    22/24     ACA ACA ACA GCA ACA AGA ACA ACA
   291839  TTA *  7    19/21     TTA CTA TTA TTA TTA TTA TTT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       301682 
 Total number of repeats detected..............       33 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      3       2       1       0       0       0       0       0       0       0       0       0       0   
  ACA      4       3       1       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      3       3       0       0       0       0       0       0       0       0       0       0       0   
  TCA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GAT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GAG      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GCA      6       6       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      3       3       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   1 ATT +   1 TTA +    0 TAT      =    2 
   0 AAG +    1 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    1 
   0 AAC +    4 ACA +   1 CAA +   0 GTT +   0 TTG +    1 TGT      =    6 
   0 ATG +    1 TGA +   1 GAT +   1 CAT +   0 ATC +    1 TCA      =    4 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   2 GAG +   2 CCT +   0 CTC +    0 TCC      =    4 
   3 AGC +    6 GCA +   3 CAG +   0 GCT +   1 CTG +    3 TGC      =   16 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7292481|gb|AE003481.1|AE003481 Drosophila melanogaster genomic scaffold 142000013386045 section 15 of 17, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     6837  TTA *  8    22/24     TTA TTT TTA TTA TTA TTA TTT TTA
    34323  CAT * 12    33/36     CAT CAT CAA CAT CAA CAT CAT CAT CAT CAT CAC CAT
    36564  GCA *  8    22/24     GCA GCA GCA ACA GCA GCA GCG GCA
    39297  TAT *  9    25/27     TAT TAT TAT TAT TAT TAT TTA TAT TAT
    53811  AAT *  7    21/21     AAT AAT AAT AAT AAT AAT AAT
    94374  GCA *  8    22/24     GCA GCA GCA ACA TCA GCA GCA GCA
   113566  CCA *  7    19/21     CCA ACA CCA ACA CCA CCA CCA
   125524  AAC *  7    19/21     AAC AAC AGC AAC AAC ATC AAC
   130874  TCC *  8    22/24     TCC TCC TCC TCC TCC TCC ACC GCC
   131321  ACC *  7    19/21     ACC ACC ACC GCC ACC ACC TCC
   153175  TGG *  8    22/24     TGG TGG GGG TGG AGG TGG TGG TGG
   153566  TGA *  7    19/21     TGA TGA TGA TGA TGG TGG TGA
   154483  GTG *  7    19/21     GTG GTT GTA GTG GTG GTG GTG
   158957  GGT *  7    20/21     GGT GGT GGT GGT GGG GGT GGT
   159019  TGG *  7    19/21     TGG CGG TGG TGG TGG AGG TGG
   159242  GGT *  8    23/24     GGT GGT GGT GGT GGT GGG GGT GGT
   159325  TGG *  7    19/21     TGG TGG TGG TGG GGG TGG TGT
   162776  AAT *  7    19/21     AAT AAC AAT AAT AAT AAA AAT
   193977  GTC *  7    19/21     GTC GTC ATC GTC GTC GTC ATC
   196093  TGA *  7    19/21     TGA AGA TGA TGA TGC TGA TGA
   209158  ATC *  7    19/21     ATC ATC ATC GCC ATC ATC ATC
   235885  CTT *  7    19/21     CTT CTT CTT CTT CCT CTT CAT
   251907  GCT *  8    22/24     GCT GCT GCT GCT GCT GCT GCT TTT
   268929  CAG *  9    25/27     CAG CAG CAG CAG CAG CAG CAG CAG ATG
   268968  CAG *  8    22/24     CAG CAG CAG CAG CAG ATG CAG CAG
   269453  CAG *  7    19/21     CAG CAG CAG CAG CAG CAA CAC
   276804  CAC *  7    19/21     CAC CAC CAC CAC CAC CCC CCC
   283557  CAG *  8    23/24     CAG CCG CAG CAG CAG CAG CAG CAG
   283589  GCA * 10    27/30     GCA GCA GCA ACA ACA GCA GCA GCA GCA ACA
   303655  AGC *  7    19/21     AGC AGC AGC AGC AGC AGC TGT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       319765 
 Total number of repeats detected..............       30 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGG      3       3       0       0       0       0       0       0       0       0       0       0       0   
  TCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCA      3       2       1       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CAG      4       4       0       0       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   2 AAT +    0 ATA +   0 TAA +   0 ATT +   1 TTA +    1 TAT      =    4 
   0 AAG +    0 AGA +   0 GAA +   1 CTT +   0 TTC +    0 TCT      =    1 
   1 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    1 
   0 ATG +    2 TGA +   0 GAT +   1 CAT +   1 ATC +    0 TCA      =    4 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    1 TCC      =    1 
   1 AGC +    3 GCA +   4 CAG +   1 GCT +   0 CTG +    0 TGC      =    9 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   1 GTC +    0 TCG      =    1 
   1 ACC +    1 CCA +   1 CAC +   2 GGT +   1 GTG +    3 TGG      =    9 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7292415|gb|AE003480.1|AE003480 Drosophila melanogaster genomic scaffold 142000013386045 section 14 of 17, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    11879  TGC *  9    25/27     TGC TGC TGC TGC TGT TGT TGC TGC TGC
    12361  GCA *  7    19/21     GCA GCA ACA ACA GCA GCA GCA
    18240  GCA *  7    20/21     GCA GCA GCA GCA GCA ACA GCA
    44726  ACA *  7    19/21     ACA ACA ACA ACA ACC ACA ATA
    52715  ATG *  8    22/24     ATG ATG ATC ATA ATG ATG ATG ATG
    94331  AGG *  8    22/24     AGG AGG AGG AGA AGC AGG AGG AGG
    95887  ATA *  7    19/21     ATA ATA ATA ATA ATA ATG AGA
   101471  GCT * 12    34/36     GCT GCT GCT GCT GCT GCT GCT GTT GCT GCT GCT GAT
   104222  CAG * 10    27/30     CAG CAA AAG CAG CAG CAG CAG CAG CAG CAC
   105513  TGA *  7    19/21     TGA TGG TGA TGG TGA TGA TGA
   117141  CAG *  7    20/21     CAG CAG CAG CAG CAG CAG GAG
   143368  ATC *  7    20/21     ATC ATC ATC ATC ATC ATC ATT
   147229  CGC *  8    22/24     CGC CGC CCC CGC CGC CGC CGC CGT
   168262  CTC *  7    19/21     CTC CTG CTC CTC CTC TTC CTC
   169723  ATC *  7    19/21     ATC ATC AAC AGC ATC ATC ATC
   255152  TCC *  7    19/21     TCC TCC TCA TCG TCC TCC TCC
   256266  AAC *  8    22/24     AAC AAG AAC AAC AAT AAC AAC AAC
   257277  CTC *  7    19/21     CTC CTC CTC CTC CTC CTT CCC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       310450 
 Total number of repeats detected..............       18 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  AGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CAG      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CTC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    1 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    1 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    2 
   1 ATG +    1 TGA +   0 GAT +   0 CAT +   2 ATC +    0 TCA      =    4 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   1 AGG +    0 GGA +   0 GAG +   0 CCT +   2 CTC +    1 TCC      =    4 
   0 AGC +    2 GCA +   2 CAG +   1 GCT +   0 CTG +    1 TGC      =    6 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    1 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7292381|gb|AE003479.1|AE003479 Drosophila melanogaster genomic scaffold 142000013386045 section 13 of 17, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    25348  CTG *  7    19/21     CTG ATG CTG CTG CTG GTG CTG
    25416  GCA *  7    19/21     GCA ACT GCA GCA GCA GCA GCA
    25437  ACA *  7    19/21     ACA ACA ACA ACA ACA ACA ATC
    35554  TAG *  8    24/24     TAG TAG TAG TAG TAG TAG TAG TAG
    41012  AGC * 13    36/39     AGC AGC AGC AGC AGC AGC AGC AGC AGC AGA AAG AGC AGC
    47333  CAT *  7    19/21     CAT CAT CAT CAC CAT CAC CAT
    47364  ATC *  8    22/24     ATC ATC ATC ATC ATC ATC ATT AGC
    56582  TGC *  7    19/21     TGC TGA TGC TGC TGC TGT TGC
    56639  TGT *  7    19/21     TGT TGC TGT TGT TGT TGC TGT
    94049  CTG *  7    19/21     CTG CTG CTG CTG CTG CTG CGC
    94327  GCT *  8    22/24     GCT GCA GCT GCT GCT GTT GCT GCT
    94361  CTG *  7    19/21     CTG TTG CTG CTG CTG TTG CTG
    94643  CTG *  7    19/21     CTG CTG CTG CTG CAG CTG TTG
   101330  AAC *  7    19/21     AAC AAC AAA AAG AAC AAC AAC
   113630  GCT * 13    36/39     GCT GCT GTT GCT GCT GCT GCT GCT GCG GCT GCT GCT GCG
   113907  GCT * 10    28/30     GCT GCT GCT GCT GTT GCT GCT GCT GCT GCA
   113945  TGC *  8    24/24     TGC TGC TGC TGC TGC TGC TGC TGC
   114033  GCT *  7    19/21     GCT GGT GGT GCT GCT GCT GCT
   139181  GCA * 14    38/42     GCA GCA GCA AAA GCA GCA GCA GCA GCA GCA GCA GCA ACA TCA
   139224  GCA *  7    19/21     GCA GCA GCA GCA GCA GCA ACT
   139281  AGC *  7    20/21     AGC CGC AGC AGC AGC AGC AGC
   143336  CAG *  7    19/21     CAG CTG CAG CAG CAG CAG CAT
   145543  GCA * 12    33/36     GCA ACA GCA GCA GCA ACA GCA GCA GCA ACA GCA GCA
   147790  CAA *  7    20/21     CAA CAA CAA TAA CAA CAA CAA
   151277  CAG *  8    22/24     CAG CAG CAC CAT CAG CAG CAG CAG
   152798  GCC *  7    19/21     GCC GCC GCT GCC GCC GCC GCA
   168784  ACA *  7    19/21     ACA ACA ACA ACA ACA ACA ATT
   179090  GCA * 11    31/33     GCA GCA GCG GCA GCA GCA GCA GCA GCA TCA GCA
   179317  GCA * 14    38/42     GCA GCA GCA GCA GCA GCA GCA ACT GCA ACA GCA GCA GCA ACA
   180164  TGC *  7    19/21     TGC TGC TGC TGC TGC TGC TTG
   180409  TGC * 10    27/30     TGC TGC TGC CGC TGC TGC TGC TGC TGT TGT
   180454  CTG *  8    22/24     CTG CTG CTG CTT CTG CGG CTG CTG
   181027  GAT *  7    19/21     GAT GAT GAT GAT GAT GAT GGG
   190418  CAG *  7    19/21     CAG CAG CAG CAG CAG CAA CAA
   208079  AAT *  7    19/21     AAT AAA AAA AAT AAT AAT AAT
   257800  CAG * 10    28/30     CAG CAG CAG CAG CAG CAA CAG CAA CAG CAG
   261791  GGT *  8    22/24     GGT GGT AGT GGC GGT GGT GGT GGT
   271882  CAT * 11    30/33     CAT CAT CAT CAT CGT CAT CGT CAT CAT TAT CAT
   279514  TGG *  7    19/21     TGG TGG TGG TGG TGG TGC TGC
   286703  CTG *  8    22/24     CTG CTG CTG TTG CTG CTG CTG ATG
   286981  AGC * 10    27/30     AGC AGC AGC AAC ATC AGC AGC AGC AGC AAC
   290144  CAA *  7    19/21     CAA CAA CAA AAA CAA CAA CAG
   292547  GGT *  7    20/21     GGT GGT GGT GGT AGT GGT GGT
   292580  TGA * 10    27/30     TGA TGA TGA TGA TGG TGA TGA CGA TGA TGT
   297580  CAA *  8    22/24     CAA CAA CAA CAA CAA TAA TAA CAA
   298900  CAG *  7    19/21     CAG CAA CAG CAG CAG GAG CAG
   300739  GCA * 15    41/45     GCA GCA GCA GCA ACA GCA GCA GCA GCA GCA GCA TCA GCA TCA CCA
   300832  GCA *  7    20/21     GCA GCA GCA ACA GCA GCA GCA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       309883 
 Total number of repeats detected..............       48 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      3       1       1       1       0       0       0       0       0       0       0       0       0   
  ACA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      4       3       1       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCA      8       3       2       3       0       0       0       0       0       0       0       0       0   
  GCT      4       2       1       1       0       0       0       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      3       3       0       0       0       0       0       0       0       0       0       0       0   
  CAT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CAG      5       4       1       0       0       0       0       0       0       0       0       0       0   
  CTG      6       6       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    2 ACA +   3 CAA +   0 GTT +   0 TTG +    1 TGT      =    7 
   0 ATG +    1 TGA +   1 GAT +   2 CAT +   1 ATC +    0 TCA      =    5 
   0 AGT +    0 GTA +   1 TAG +   0 ACT +   0 CTA +    0 TAC      =    1 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   3 AGC +    8 GCA +   5 CAG +   4 GCT +   6 CTG +    4 TGC      =   30 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   2 GGT +   0 GTG +    1 TGG      =    3 
   0 GGC +    0 GCG +   0 CGG +   1 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7292360|gb|AE003478.1|AE003478 Drosophila melanogaster genomic scaffold 142000013386045 section 12 of 17, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    12853  TCC *  7    19/21     TCC TCC TCC TCC TCC CCC TCG
    13710  CAA * 11    30/33     CAA CAA CAA CAA CAA CAA CAA CAA CTA TAA GAA
    18099  GCC *  8    22/24     GCC GCC GCC GCC GCC GTT GCC GCC
    19027  AAC *  8    23/24     AAC AAC AAC AAC AAC AAC AAC AAT
    25392  TTG * 12    33/36     TTG CTG TTG TTG GTG TTG TTG TTG TTG ATG TTG TTG
    25605  CAA *  7    19/21     CAA TAA CAA CAA CGA CAA CAA
    25711  CAA *  7    19/21     CAA CAA CAA CAG AAA CAA CAA
    35179  TGC * 18    49/54     TGC TGC AGA TGC TGC TGC TGC TGC TGC TGT TGC TGC TGC TGC TGT TGC TGT TGC
    35490  GTT * 11    30/33     GTT GTT GTT GAT GCT GTT GTT GTT GTT GTT GCT
    36731  TTA * 10    27/30     TTA TGA TTA TTA TTA TTA TAA TTA TTA TTT
    37869  ATT *  7    19/21     ATT ATT ATT ATT ATT ATT GTG
    40218  GCA *  8    22/24     GCA GCC GCA GCA GCA GCA TCA GCA
    40243  CAG *  7    20/21     CAG CAG CAG CAG CAG CAT CAG
    44272  CAT *  7    19/21     CAT CAT CAT CAG CAT CAG CAT
    44602  CAA *  7    19/21     CAA CAG CAA CAG CAA CAA CAA
    59675  GCA *  9    25/27     GCA GCA GCA GCA GCA GCC GCA ACA GCA
    59742  CAG *  7    19/21     CAG CGG CAG CAG CAG CAG CAT
    64401  TGT *  7    19/21     TGT TGT TGT TGT TGT TGT GCT
    71083  GAG *  7    19/21     GAG GAG GAG GAG GAA GAC GAG
    76929  ATA * 14    38/42     ATA ATA ATA ATA ATA ATA ATA ATA ATA ACA ATA ACC ATA ATG
    87521  CAT * 10    27/30     CAT GAT CAT CAT CAT CCT CAT CAT CAT CGT
    89973  GCA *  7    19/21     GCA GCA GCT GCA GCG GCA GCA
   103441  AAT *  8    22/24     AAT AAT AAT AAT TAT AAT AAT TAT
   106850  GTT *  7    20/21     GTT GTT GTT GTT GTT GTT GCT
   131585  TTG *  9    25/27     TTG TTC TTG TTG TTG TTG TTG TTG CTG
   193231  ATT *  7    19/21     ATT ATT ATT TTT ATT TTT ATT
   209571  CAC *  7    19/21     CAC CAC CAT CAC CAC CAC CAT
   275851  AAC *  7    19/21     AAC AAC AAC AAC AAC ACC AGC
   275886  CAG *  7    19/21     CAG CAG CAA CAG CAG CAG CAA
   275985  CCA *  8    22/24     CCA CCA CCA CCT GCA CCA CCA CCA
   277132  GCA *  8    22/24     GCA GCA GCA ACA GCA GCA GCA ACA
   277302  CAG * 15    41/45     CAG CAG CAG CAA CAG CAG CAG CAG CAG CAG CAG CAA CAC CAG CAA
   277475  GCA *  8    22/24     GCA GCA GCA GCA TCA ACA GCA GCA
   277942  CAG *  8    22/24     CAG CAG CAA CAG CAA CAG CAG CAG
   300689  GCA * 10    27/30     GCA GCA GCA ACA GCA GCA GCA ACA GCA ACA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       317218 
 Total number of repeats detected..............       35 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AAC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  ATA      1       0       0       1       0       0       0       0       0       0       0       0       0   
  ATT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TTG      2       1       1       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       0       0       0       1       0       0       0       0       0       0       0       0   
  TCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GCA      6       5       1       0       0       0       0       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      4       3       1       0       0       0       0       0       0       0       0       0       0   
  CAT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CAG      5       4       0       1       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    1 ATA +   0 TAA +   2 ATT +   1 TTA +    0 TAT      =    5 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   2 AAC +    0 ACA +   4 CAA +   2 GTT +   2 TTG +    1 TGT      =   11 
   0 ATG +    0 TGA +   0 GAT +   2 CAT +   0 ATC +    0 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   1 GAG +   0 CCT +   0 CTC +    1 TCC      =    2 
   0 AGC +    6 GCA +   5 CAG +   0 GCT +   0 CTG +    1 TGC      =   12 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    1 CCA +   1 CAC +   0 GGT +   0 GTG +    0 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   1 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7292303|gb|AE003477.1|AE003477 Drosophila melanogaster genomic scaffold 142000013386045 section 11 of 17, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     6137  GCT *  7    19/21     GCT GCT GCC GCT GCT GCT GGT
    21186  CAG * 10    27/30     CAG CCG CCG CAG CAG CAG CAG CAG CAG CCG
    43300  GCA *  7    19/21     GCA GTA GCA GCA GCG GCA GCA
    86602  CAG *  7    20/21     CAG CAG CAG CAG CAA CAG CAG
    86659  CAG *  8    22/24     CAG CAG CAG CAG CAG TTG CAG CAG
    86697  GCA * 10    27/30     GCA GCA GCA GCA ACA ACA GCA GCA GCA CCA
    88673  CAG *  7    19/21     CAG CAG CAG CAT CTG CAG CAG
    88703  CAG *  8    22/24     CAG CAG CAG CAA CAG CAG GAG CAG
   163251  CAG *  7    19/21     CAG CAG CAG CAG CAG CAG ACG
   165743  TCG *  7    19/21     TCG TCC GCG TCG TCG TCG TCG
   166461  CAG *  8    22/24     CAG CAC CAA CAG CAG CAG CAG CAG
   167154  CAG *  8    22/24     CAG CAA CAG CAG CAG CAG CAG CTG
   171860  AAC *  7    20/21     AAC AAC AAC AAC AAC AAC AAA
   210267  GAC *  7    19/21     GAC GAC GAC GAC GAC GAG GAG
   223406  GAG *  7    19/21     GAG GAG GAT GAT GAG GAG GAG
   225024  AAG *  7    21/21     AAG AAG AAG AAG AAG AAG AAG
   302000  CAA *  8    22/24     CAA CAA CAA CAA CAG CAG CAA CAA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       304734 
 Total number of repeats detected..............       17 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      8       7       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   1 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    1 
   1 AAC +    0 ACA +   1 CAA +   0 GTT +   0 TTG +    0 TGT      =    2 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   1 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   0 AGC +    2 GCA +   8 CAG +   1 GCT +   0 CTG +    0 TGC      =   11 
   0 ACG +    0 CGA +   1 GAC +   0 CGT +   0 GTC +    1 TCG      =    2 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7292275|gb|AE003476.1|AE003476 Drosophila melanogaster genomic scaffold 142000013386045 section 10 of 17, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    31602  CTG *  8    22/24     CTG CTG CTG CTG CGG CAG CTG CTG
    32610  CTG * 15    41/45     CTG CTG CTG TTG CTG CTG CTG CTG CTG CTG TTG CTG TTG TTG CTG
    32656  TGC * 10    27/30     TGC TGC TGC TGC TGC TGT TGC TGC TGT AGC
    36896  CTG *  7    19/21     CTG CTG TTG CTG CTG CTG TTG
    36942  TGC *  7    19/21     TGC TGC TGC TGC TGC TGC AGG
    37079  CTG *  7    19/21     CTG CTG CGG CTG CTG CTG CAG
    37205  CTG *  8    22/24     CTG CTG CTG CTG TTG TTG CTG CTG
    37334  CTG *  8    22/24     CTG GTG TTG CTG CTG CTG CTG CTG
    37540  TGT *  7    19/21     TGT TGT TGT TGC TGT TGC TGT
    37692  TGC * 10    27/30     TGC TGC TGC TGC TGT TGC TGT TGC TGC TGT
    39438  TGC *  7    19/21     TGC TGC TGC TGC TGC TGT TGG
    39462  TGC *  8    22/24     TGC TGC TGT TGC TGC TGC GGC TGC
    39540  TGC * 14    39/42     TGC TGC TGG TAC TGC TGC TGC TGC TGC TGT TGC TGC TGC TGC
    46925  ACA *  8    22/24     ACA ACA ACG ACA ACA ACA ACA ACC
    63765  CTG *  7    19/21     CTG CCG CTG CTT CTG CTG CTG
    65694  TTA *  7    19/21     TTA TTA TTA TTA TTA TTA TAT
    66471  CTT *  8    22/24     CTT CTT CTG CTT CTT CTT CTT CTG
    78025  CAA *  7    19/21     CAA CAA CAA CAG CAG CAA CAA
    79691  CAG *  8    22/24     CAG CAG CAG CAG CAG CAG AAG AAG
    81675  GTT *  8    22/24     GTT GAT GTT GTT GTT GAT GTT GTT
    86453  AAT *  9    25/27     AAT AAT AAT AAT AAT AAT AAT AAC AAG
    90827  TGC *  7    19/21     TGC TGC TGC TGC TCT TGC TGC
   102639  TGT *  7    19/21     TGT TGC TGC TGT TGT TGT TGT
   108582  TCA *  8    22/24     TCA ACA TCA TCA TCA TCG TCA TCA
   114237  TGC *  8    22/24     TGC TGC TGC TGT TGT TGC TGC TGC
   114375  GCT *  8    22/24     GCT GTT GCT GTT GCT GCT GCT GCT
   114437  TGC * 18    50/54     TGC TGC TGC TGC TGC TGC TGC TGT TGC TGC TGC TGC TGC TGA TGT TGC TGC TGG
   114497  TGC *  8    22/24     TGC TGC TGC TGT TGC TGT TGC TGC
   116510  GAT *  7    19/21     GAT GAT GAT GAT GTT GAT GAG
   124999  TGT *  7    19/21     TGT TGC TGT TGT TCT TGT TGT
   150030  TTG *  7    19/21     TTG TTG TTG TTA TTG TTA TTG
   155386  AGT *  7    19/21     AGT AGT AGT GGT AGT AGT GGT
   163160  AGC *  7    19/21     AGC AGC AGC AGC AGC AGT AGA
   167299  AGC * 14    38/42     AGC AGC AGC AGC AAC AGC AGC AGC AGC AAC AGC AGC AAC TGC
   167347  AGC *  7    19/21     AGC AGC ATC AGC AGC AGC AAC
   190084  GTC *  7    19/21     GTC GCC GTC GTC ATC GTC GTC
   191331  GCA *  8    22/24     GCA GCA ACA GCA ACA GCA GCA GCA
   209527  ATA * 18    50/54     ATA ATA ACA ATA ATA ATA ACA ATA ATA ATA ATA ATA TTA ATA ATA ATT ATA ATA
   231194  GTG * 10    28/30     GTG GTG GTG CTG GTG GTG GTG GGG GTG GTG
   257624  CGA *  7    19/21     CGA CCA CGA TGA CGA CGA CGA
   278443  AAC *  8    22/24     AAC AAA AAC AAC ACC AAC AAC AAC
   278571  ACA *  7    19/21     ACA GCA ACA ACA ACC ACA ACA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       306945 
 Total number of repeats detected..............       42 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATA      1       0       0       0       1       0       0       0       0       0       0       0       0   
  AGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      3       2       0       1       0       0       0       0       0       0       0       0       0   
  ACA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      3       3       0       0       0       0       0       0       0       0       0       0       0   
  TGC     10       6       2       1       1       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      7       6       0       1       0       0       0       0       0       0       0       0       0   
  CGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    1 ATA +   0 TAA +   0 ATT +   1 TTA +    0 TAT      =    3 
   0 AAG +    0 AGA +   0 GAA +   1 CTT +   0 TTC +    0 TCT      =    1 
   1 AAC +    2 ACA +   1 CAA +   1 GTT +   1 TTG +    3 TGT      =    9 
   0 ATG +    0 TGA +   1 GAT +   0 CAT +   0 ATC +    1 TCA      =    2 
   1 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    1 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   3 AGC +    1 GCA +   1 CAG +   1 GCT +   7 CTG +   10 TGC      =   23 
   0 ACG +    1 CGA +   0 GAC +   0 CGT +   1 GTC +    0 TCG      =    2 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   1 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7292236|gb|AE003475.1|AE003475 Drosophila melanogaster genomic scaffold 142000013386045 section 9 of 17, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    12623  CAG *  7    19/21     CAG CAG CAG TCG CAG CAG CAG
    21934  GGT * 10    28/30     GGT GGT CGT GGT AGT GGT GGT GGT GGT GGT
    34886  TGC *  7    19/21     TGC AGT TGC TGC TGC TGC TGC
    55918  TGC *  7    19/21     TGC TGG TGG TGC TGC TGC TGC
    57156  CTG * 10    27/30     CTG CTG CTG TTG TTG CTG CTG CTG CTG ATG
    69537  TCA *  7    20/21     TCA TCA TCA TCA TCA TCA TCG
   103449  TGT * 11    30/33     TGT TGT TGT TGT TGT TGT TGT TGG TGT GTT TGT
   107428  CCG *  8    22/24     CCG CCT CCT CCG CCG CCG CCG CCG
   109108  CTG *  8    22/24     CTG CTG CTG CTG TTG CTG CTG CAG
   109133  TGC *  8    23/24     TGC TGC TGC TGC TGC TGC TGT TGC
   112865  GTA *  8    22/24     GTA GTA GTA GTA GTA GTA GTC GTG
   113754  GCC *  7    19/21     GCC GCC GCT GCT GCC GCC GCC
   123204  CCT *  8    22/24     CCT CCT CCT ACT CCT CCC CCT CCT
   123228  CCA *  8    22/24     CCA CCA CCA CCA CCA CCA CCT CCT
   125648  CAA *  9    25/27     CAA CTG CAA CAA CAA CAA CAA CAA CAA
   125704  AAC *  7    19/21     AAC AAC AAC AAC AAC AAC ATT
   125839  GCT *  7    20/21     GCT GCT GCT GCT GCT GCT GCA
   140111  AGC *  7    19/21     AGC AAC TGC AGC AGC AGC AGC
   161190  CAA *  7    20/21     CAA CAA CAA CAC CAA CAA CAA
   164940  CTC *  8    22/24     CTC CTC CTT CTC CTC CTC CTG CTC
   183381  ACA *  8    22/24     ACA ACA ACA ACA CCA GCA ACA ACA
   185261  GAT *  8    22/24     GAT GAT GAG GAT GAT GAT GAT GAC
   185963  GAC *  8    23/24     GAC GAC GAA GAC GAC GAC GAC GAC
   193546  CCA * 11    30/33     CCA CCC CCA CCA CCA CCA CCA CCA CCA CCA CGG
   259424  ATA *  7    19/21     ATA ATA ATA ATA ATA ATC GTA
   266349  CCT *  7    19/21     CCT CCT CCT CCT CCT TCT TCT
   268816  CTG *  7    19/21     CTG TTG CTG TTG CTG CTG CTG
   268858  CTG *  8    22/24     CTG CTG CTG CTG CTG CTG TTG TTG
   268889  TGC *  7    19/21     TGC TGC TGC TGC TGT TGC TGT
   269251  CTG * 10    27/30     CTG CTG CTG CTG ATG TTG CTG CTG CTG TTG
   276268  CTG * 11    30/33     CTG CTG CTG TTG CTA CTG CTG CTG CTG CAG CTG
   276542  CTC *  8    22/24     CTC CTC CTG CTC CTC CTC CTC CGC
   277104  CTG * 11    31/33     CTG CTG CTG CTG CTG CTG CTG CTG CTG ATG ATG
   282503  TGC * 11    30/33     TGC TGT TGC TGC TGC TGC TGC TGC TGC TGA TGA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       304231 
 Total number of repeats detected..............       34 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGC      5       4       1       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      7       3       4       0       0       0       0       0       0       0       0       0       0   
  CTC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CCA      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    1 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    1 ACA +   2 CAA +   0 GTT +   0 TTG +    1 TGT      =    5 
   0 ATG +    0 TGA +   1 GAT +   0 CAT +   0 ATC +    1 TCA      =    2 
   0 AGT +    1 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    1 
   0 AGG +    0 GGA +   0 GAG +   2 CCT +   2 CTC +    0 TCC      =    4 
   1 AGC +    0 GCA +   1 CAG +   1 GCT +   7 CTG +    5 TGC      =   15 
   0 ACG +    0 CGA +   1 GAC +   0 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    2 CCA +   0 CAC +   1 GGT +   0 GTG +    0 TGG      =    3 
   0 GGC +    0 GCG +   0 CGG +   1 GCC +   1 CCG +    0 CGC      =    2 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7292198|gb|AE003474.1|AE003474 Drosophila melanogaster genomic scaffold 142000013386045 section 8 of 17, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    93952  AGC *  7    19/21     AGC AGC AGC ACC AGC AGC AGT
   192686  ACA *  8    22/24     ACA ACA ACA ACA ACA ACA GCA GCA
   240194  TGC *  7    19/21     TGC TGC TGC TGC GGC TGC TGT
   240563  CTC *  7    19/21     CTC CTG CTC CTG CTC CTC CTC
   271961  TGT * 10    28/30     TGT TGT TGT TGT TGT TGC TGT TGT TGT TGC
   289320  CCA *  7    19/21     CCA CCA GCA CCA CCA CCA TCA
   289531  CAG * 10    27/30     CAG CAG CAG CAG CAG CAG CAG CAG CAA CGA
   289695  AGC * 11    31/33     AGC AGC AGC AGC AGC AGC AGC AGC AAC AAC AGC
   291451  CCT *  7    20/21     CCT CCT CCT CCT CAT CCT CCT
   293261  AAC *  7    20/21     AAC AAA AAC AAC AAC AAC AAC
   295564  ATG *  7    20/21     ATG ATG ATG ATG ATG ATG ATC
   296684  CAG *  8    22/24     CAG CAG CAA CAG CAG CAG CAG CAA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       306364 
 Total number of repeats detected..............       12 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      2       1       1       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    1 ACA +   0 CAA +   0 GTT +   0 TTG +    1 TGT      =    3 
   1 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   1 CCT +   1 CTC +    0 TCC      =    2 
   2 AGC +    0 GCA +   2 CAG +   0 GCT +   0 CTG +    1 TGC      =    5 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    1 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7292168|gb|AE003473.1|AE003473 Drosophila melanogaster genomic scaffold 142000013386045 section 7 of 17, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    28566  GAG * 12    33/36     GAG CAG GAG AAG GAG GAG GAG GAG GAG GAG GAG GGG
    40652  TGC * 15    41/45     TGC TGC GGC TGC TGC TGC TGC TCC TGC TGT TGC TGC TGC GGC TGC
    64757  TGC *  8    22/24     TGC TGC TGT TGC TGT TGC TGC TGC
    86606  CAT *  7    19/21     CAT CAC CAT CAT CAT CAC CAT
    86690  CAG *  7    19/21     CAG CAT CAC CAG CAG CAG CAG
    89089  TGC *  7    19/21     TGC TGC TGC TGC TGC TGA TGA
    89110  TGA *  7    19/21     TGA TGA TGA TGA TGA GGA GGA
    95471  CAG * 11    30/33     CAG CAG CAG CAG CAA CAG CAA CAG CAG CAG CAC
   103357  GCC *  7    19/21     GCC ACC GCC GCC GCC GCC GCT
   161912  CAG *  7    19/21     CAG CAG CAG CAG CTG CAG CAT
   241821  CTT *  7    19/21     CTT CTT CTT CTT CTC TTT CTT
   279485  GAG *  9    26/27     GAG GAG GAG GAG GAG GAG GAG GAG GAC
   280990  AAT *  7    20/21     AAT AAT AAT AAT AAT AAT AGT
   283664  CTG *  8    22/24     CTG CTG CTG CTG TTG CTG TTG CTG
   286617  TGG * 12    33/36     TGG TGG TGT TGG TGG TGG TGG TGT TGG TGA TGG TGG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       304106 
 Total number of repeats detected..............       15 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGC      3       2       0       1       0       0       0       0       0       0       0       0       0   
  GAG      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      3       2       1       0       0       0       0       0       0       0       0       0       0   
  CTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   1 CTT +   0 TTC +    0 TCT      =    1 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    0 
   0 ATG +    1 TGA +   0 GAT +   1 CAT +   0 ATC +    0 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   2 GAG +   0 CCT +   0 CTC +    0 TCC      =    2 
   0 AGC +    0 GCA +   3 CAG +   0 GCT +   1 CTG +    3 TGC      =    7 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    1 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   1 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7292093|gb|AE003472.1|AE003472 Drosophila melanogaster genomic scaffold 142000013386045 section 6 of 17, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    54890  TTA *  7    19/21     TTA TTA TTA TTA TTA TTT TTT
    59088  CAG *  7    20/21     CAG CAG CAG CAG CGG CAG CAG
    64724  AGC *  7    19/21     AGC TGC AGC AGC AGC AAC AGC
    79724  TGC *  9    25/27     TGC TGC TGC TGC TGC TGA TGC TGT TGC
    86123  AGC *  7    19/21     AGC CCC AGC AGC AGC AGC AGC
    92328  TCC *  8    22/24     TCC TCC TCT TCC TCC TCC TCC TGC
    98667  GTT *  8    22/24     GTT GTA GTT GTT GTT CTT GTT GTT
    98700  GTG *  7    20/21     GTG GTG GTG GTG GTG GTG CTG
   126425  CTT *  8    22/24     CTT CTT CGA CTT CTT CTT CTT CTT
   138921  GAC * 11    30/33     GAC GAC GAC GAC GAC GAC GAC GAT GAC GAT GAT
   141446  GAG *  7    19/21     GAG GAG GAG CAG GAG TAG GAG
   161087  CAG *  7    19/21     CAG AAG CAG CAG CAG AAG CAG
   211840  CAA *  7    19/21     CAA CAA CAA CGA CAA CAA CTA
   212549  CAG *  7    19/21     CAG CAG CAG CAG CAG CAA CAA
   269519  CAG *  8    22/24     CAG CAG CAA CAG CAC CAG CAG CAG
   270733  GCA *  8    23/24     GCA ACA GCA GCA GCA GCA GCA GCA
   270860  CAG *  8    22/24     CAG CAG CAG CAG CAA CAT CAG CAG
   270916  GCA * 11    31/33     GCA GCA GCA GCA GCA GCA GGA GCA ACA GCA GCA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       303191 
 Total number of repeats detected..............       18 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      5       5       0       0       0       0       0       0       0       0       0       0       0   
  CTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   1 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   1 CTT +   0 TTC +    0 TCT      =    1 
   0 AAC +    0 ACA +   1 CAA +   1 GTT +   0 TTG +    0 TGT      =    2 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   1 GAG +   0 CCT +   0 CTC +    1 TCC      =    2 
   2 AGC +    2 GCA +   5 CAG +   0 GCT +   0 CTG +    1 TGC      =   10 
   0 ACG +    0 CGA +   1 GAC +   0 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   1 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7292041|gb|AE003471.1|AE003471 Drosophila melanogaster genomic scaffold 142000013386045 section 5 of 17, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    28232  GGA *  8    22/24     GGA GGA ACA GGA GGA GGA GGA GGA
    49466  GTT *  7    19/21     GTT GTT GTT GTT GTT TTT GTG
    58652  CAG *  7    19/21     CAG CAG CAG CTT CAG CAG CAG
   125741  CTC *  9    26/27     CTC CTC CTC CTC CTC CTC CTC CTC CTG
   126886  TCC *  7    19/21     TCC CCC TCC TCC TCC CCC TCC
   128692  CTG * 11    32/33     CTG CTG CTG CTG CTG CTG CTG CTG CTG CTT CTG
   173912  CAT * 11    31/33     CAT CAT CAT CAT CAT CAT CAT CAC CAT CAT CAC
   174034  TTG *  7    19/21     TTG TTG TTG TTG ATA TTG TTG
   174299  ATC *  8    22/24     ATC ATC ATC ATC ATC ATC ATC AGA
   206518  AGG * 12    33/36     AGG AGT AGG AGG AGT AGG AGG AGG AGG AGG AGT AGG
   212439  GAT *  8    22/24     GAT GAT GAT GAT GAT GAT GAT GTA
   234426  AAC *  7    19/21     AAC AAC AAC AAC AGC AAC AGC
   250648  ACT *  7    19/21     ACT ACT ACT ACT ACT ACT TGT
   251201  CCA *  7    19/21     CCA CCA CCA CCA CCA CCA CTG
   263446  ATC *  7    19/21     ATC ATC ATA ATC ATC ATA ATC
   273530  AAT *  7    19/21     AAT AAT AAT AAT AAT AAA AAA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       301109 
 Total number of repeats detected..............       16 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  AGG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  ACT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    0 ACA +   0 CAA +   1 GTT +   1 TTG +    0 TGT      =    3 
   0 ATG +    0 TGA +   1 GAT +   1 CAT +   2 ATC +    0 TCA      =    4 
   0 AGT +    0 GTA +   0 TAG +   1 ACT +   0 CTA +    0 TAC      =    1 
   1 AGG +    1 GGA +   0 GAG +   0 CCT +   1 CTC +    1 TCC      =    4 
   0 AGC +    0 GCA +   1 CAG +   0 GCT +   1 CTG +    0 TGC      =    2 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    1 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7292017|gb|AE003470.1|AE003470 Drosophila melanogaster genomic scaffold 142000013386045 section 4 of 17, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     1191  TAA *  8    22/24     TAA TAA TAA TAA TTT TAA TAA TAA
     4584  GAC *  8    22/24     GAC GAC GAC GAC GAC GAC GAT GCC
    42399  CAA *  7    19/21     CAA CAA CTA CAA CAA CAA CTA
    44982  AAC * 11    32/33     AAC AAC AAC AAC AAC AAC AAT AAC AAC AAC AAC
    76629  TGT *  8    22/24     TGT TAT TGT TGT TGT TGT TGT TGC
   107698  CTG *  8    22/24     CTG ATG GTG CTG CTG CTG CTG CTG
   115621  TGT *  8    22/24     TGT TGC TGT TGC TGT TGT TGT TGT
   129132  ATC *  7    19/21     ATC ATC CTC ATC GTC ATC ATC
   135540  CAG *  8    22/24     CAG CAG CAG CAG CAG CAG CCG CTG
   151554  CGC *  7    20/21     CGC CGC CGC CGC CGC CGC CGA
   175915  GAT *  7    19/21     GAT GAT GTT GCT GAT GAT GAT
   178739  GCT *  7    19/21     GCT GGA GCT GCT GCT GCT GCT
   180655  CTG *  8    22/24     CTG CTG CTG CTG CTG TAG CTG CTG
   180981  TGC *  7    20/21     TGC TGC TGC GGC TGC TGC TGC
   192928  GCA *  7    19/21     GCA GGA GCA GCA GCA ACA GCA
   209391  TAA *  7    19/21     TAA TAA TAA TAA TCG TAA TAA
   211590  CTG *  7    19/21     CTG CTG CTG GTG GTG CTG CTG
   214568  GCT *  9    25/27     GCT GCT GCT GCT GCT GCT GCT TCT TCT
   214605  CTT * 10    28/30     CTT GTT CTT CTT CTT CCT CTT CTT CTT CTT
   220488  GCA *  7    19/21     GCA GCA GCA GCC GCA GTA GCA
   224228  AGC *  7    19/21     AGC AGC AAC AAC AGC AGC AGC
   224284  CAG *  7    19/21     CAG CAG CAA CAG CAG CAG CAA
   235936  CAG *  8    22/24     CAG CAG CAG CGG CAG CAG CAG CAA
   238534  TCA *  8    22/24     TCA TCA TCA TCA TCA TCA TCG ACA
   245286  TTA *  7    19/21     TTA TTA TTA TTG TTA TTA TAA
   246921  TGT *  7    20/21     TGT CGT TGT TGT TGT TGT TGT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       302423 
 Total number of repeats detected..............       26 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  ATC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      3       3       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      3       3       0       0       0       0       0       0       0       0       0       0       0   
  CTT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CTG      3       3       0       0       0       0       0       0       0       0       0       0       0   
  CGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   2 TAA +   0 ATT +   1 TTA +    0 TAT      =    3 
   0 AAG +    0 AGA +   0 GAA +   1 CTT +   0 TTC +    0 TCT      =    1 
   1 AAC +    0 ACA +   1 CAA +   0 GTT +   0 TTG +    3 TGT      =    5 
   0 ATG +    0 TGA +   1 GAT +   0 CAT +   1 ATC +    1 TCA      =    3 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   1 AGC +    2 GCA +   3 CAG +   2 GCT +   3 CTG +    1 TGC      =   12 
   0 ACG +    0 CGA +   1 GAC +   0 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    1 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7291982|gb|AE003469.1|AE003469 Drosophila melanogaster genomic scaffold 142000013386045 section 3 of 17, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     5977  GCA *  8    23/24     GCA GCA GCA GCA GCA GCA GCA ACA
    26214  CTG *  7    20/21     CTG CTG CTG CTG CTG TTG CTG
    33604  TGC * 10    27/30     TGC TGC TGC TGC TGA TGC TGC CGC TGC AGC
    34755  GCA *  7    19/21     GCA GCA GCA GCA ACA TCA GCA
    34781  AGC *  7    20/21     AGC AGC AGC AGC AGC AGC AAC
    36247  CAG *  8    22/24     CAG CAG CAG CAG CAA CAG CAG CAA
    41997  CAG * 11    30/33     CAG CAG CAG CAT CAG CAG CAG CAG CAG CAT CTG
    66603  TGC *  8    22/24     TGC TGC TGT TGC TGC TGC TGT TGC
    75299  AGT *  8    22/24     AGT AGT AGT AGT AGT AGA ATT AGT
    75755  CAT * 10    27/30     CAT CAT CAT CAT CAT CCT CAT CCT CAT CGT
   106052  ATC *  8    22/24     ATC TTC ATC ATC ATC GTC ATC ATC
   122626  GCA *  8    23/24     GCA GCA GCA TCA GCA GCA GCA GCA
   128541  TGT *  7    19/21     TGT TGT TGT TGT TGC TGT TGG
   129513  TGC *  7    19/21     TGC TGC TGC TGC TGC AGT TGC
   129779  GCA *  8    22/24     GCA GCA GCA GCA GCA GCA GCA ACC
   179731  CAG *  7    19/21     CAG CAA CTG CAG CAG CAG CAG
   197344  ATG *  8    22/24     ATG ATG ATG ATG ATG ATG TTG TTG
   209220  AAT *  8    23/24     AAT AAT AAT AAT AAT AAT AAT ACT
   240228  CAC *  9    25/27     CAC CAC CAC CAC CAC CAC CAC CAC AAA
   240327  GGA *  9    25/27     GGA GGC GGA GGA GGA GGT GGA GGA GGA
   252007  TCG *  7    19/21     TCG TCG TCG TCA TCC TCG TCG
   259671  CAG *  7    19/21     CAG CAG CAA CAG GAG CAG CAG
   259695  CAG * 11    30/33     CAG CAG CAG CAA CAG CAG CAG CAG CAG CAG CTT
   259868  GCA *  7    19/21     GCA GCA GCA TCA GCA ACA GCA
   259979  GCA *  9    25/27     GCA GCA GCA GCA ACC GCA GCA GCA GCA
   296532  ATA * 18    50/54     ATA ATA ACA ATA ATA ATA ACA ATA ATA ATA ATA ATA TTA ATA ATA ATT ATA ATA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       301868 
 Total number of repeats detected..............       26 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATA      1       0       0       0       1       0       0       0       0       0       0       0       0   
  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      3       2       1       0       0       0       0       0       0       0       0       0       0   
  TCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      6       6       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CAG      5       3       2       0       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    1 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    1 TGT      =    1 
   1 ATG +    0 TGA +   0 GAT +   1 CAT +   1 ATC +    0 TCA      =    3 
   1 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    1 
   0 AGG +    1 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   1 AGC +    6 GCA +   5 CAG +   0 GCT +   1 CTG +    3 TGC      =   16 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    1 TCG      =    1 
   0 ACC +    0 CCA +   1 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7291959|gb|AE003468.1|AE003468 Drosophila melanogaster genomic scaffold 142000013386045 section 2 of 17, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    49595  TGG * 10    28/30     TGG TGG TGG TGG TGG TGG TGG TGG TAC TGG
    69266  ATC *  7    20/21     ATC ATC ATC ATC ATC ATC AGC
   152524  CCT * 10    27/30     CCT CCT CCT CCT CCT CCT CCT CCT CTT TTT
   162344  ATT *  7    19/21     ATT TTT ATT ATT ACT ATT ATT
   198310  AGC *  7    20/21     AGC AAC AGC AGC AGC AGC AGC
   198576  GAC *  7    19/21     GAC GAC GAC GAC GAC AAC GTC
   230490  AAC *  7    19/21     AAC AAC AAC AAC AAC AAC TGC
   233665  ATT *  7    20/21     ATT ATT ATT ATT ATT ATT ATG
   248435  TGT * 11    30/33     TGT TGT TGT TGT TGT TGT TGT TGT TGC TGC TGG
   255057  CAG *  7    20/21     CAG CAG CAA CAG CAG CAG CAG
   257750  AGC *  8    22/24     AGC AGC AGC AGC AGC AAC AAC AGC
   258980  GTC *  7    20/21     GTC GTC GTC GTC GTC GTC GGC
   275533  TAA *  7    20/21     TAA TAA TAA TAA TAA TAA TAT
   290828  TTG * 15    41/45     TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG CTG TTC TTG CCG
   297675  TGC *  7    20/21     TGC TGC TGC TGC TGC TGC TTC
   298624  CTT *  8    22/24     CTT CTG CTT CTG CTT CTT CTT CTT
   299047  AAC *  8    23/24     AAC AAC AAC AAC AAA AAC AAC AAC
   299557  TTG * 10    28/30     TTG TTG TTG TTG TTG TTG TTG TTG TTT TAG
   301655  CAA *  9    25/27     CAA CAA CAA CAA CAA CAA CAC AAA CAA
   302304  CCA * 11    30/33     CCA CTA CCA CCA CCA CCA CCA CCA CCA CAA CCT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       310120 
 Total number of repeats detected..............       20 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  ATT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  ATC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      2       0       1       1       0       0       0       0       0       0       0       0       0   
  TGT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CCT      1       0       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   1 TAA +   2 ATT +   0 TTA +    0 TAT      =    3 
   0 AAG +    0 AGA +   0 GAA +   1 CTT +   0 TTC +    0 TCT      =    1 
   2 AAC +    0 ACA +   1 CAA +   0 GTT +   2 TTG +    1 TGT      =    6 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   1 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   1 CCT +   0 CTC +    0 TCC      =    1 
   2 AGC +    0 GCA +   1 CAG +   0 GCT +   0 CTG +    1 TGC      =    4 
   0 ACG +    0 CGA +   1 GAC +   0 CGT +   1 GTC +    0 TCG      =    2 
   0 ACC +    1 CCA +   0 CAC +   0 GGT +   0 GTG +    1 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7291904|gb|AE003467.1|AE003467 Drosophila melanogaster genomic scaffold 142000013386045 section 1 of 17, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    46117  TAA *  7    19/21     TAA TAA TAA TAA TAA TCA TAT
    98889  TGC *  7    19/21     TGC TGC TGC TGT TGC TGC TGT
    98927  CTG * 10    27/30     CTG CTG TTG CTG CTT CTG CTG CTG CTG TTG
   159304  CGT *  8    23/24     CGT CGT CGT CAT CGT CGT CGT CGT
   256336  GAG *  7    19/21     GAG GAG GAG GAG GAG CAG AAG
   267540  CAG * 10    28/30     CAG CAA CAG CAG CAG CAA CAG CAG CAG CAG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       298644 
 Total number of repeats detected..............       6 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CTG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   1 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    0 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   1 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   0 AGC +    0 GCA +   1 CAG +   0 GCT +   1 CTG +    1 TGC      =    3 
   0 ACG +    0 CGA +   0 GAC +   1 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7316103|gb|AE002602.1|AE002602 Drosophila melanogaster genomic scaffold 142000013386050, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       0 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7295475|gb|AE003567.1|AE003567 Drosophila melanogaster genomic scaffold 142000013386050 section 54 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     2463  TGC *  7    20/21     TGC TGC TGC TGC TGC TGC TGT
    41561  AGA *  7    19/21     AGA ACT AGA AGA AGA AGA AGA
    69350  AAC *  7    19/21     AAC AAC AGC AAC AAC AAC AGC
    71079  ATA *  7    20/21     ATA ATA ATA ATA ATA ATA ATT
    75357  GTT *  8    23/24     GTT GTT GTT GTT GTT GTT GTT GTG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       104808 
 Total number of repeats detected..............       5 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    1 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    1 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    1 
   1 AAC +    0 ACA +   0 CAA +   1 GTT +   0 TTG +    0 TGT      =    2 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    0 GCA +   0 CAG +   0 GCT +   0 CTG +    1 TGC      =    1 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7295459|gb|AE003566.1|AE003566 Drosophila melanogaster genomic scaffold 142000013386050 section 53 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    16502  GAG *  7    19/21     GAG GAG GAA GAG GAG GAG CAG
    25302  CAG *  7    19/21     CAG CAG CAG CAG CAC CAG CAC
    27726  ATT *  8    22/24     ATT ATT ATT ATT ATT ATT ATT CTC
    32026  TAA *  7    19/21     TAA TAA AAA TGA TAA TAA TAA
    45258  TGT *  7    19/21     TGT CGT TGT TGT TGT TGT GGT
    64991  CAT *  7    20/21     CAT CAT CAT CAT CAT CAT CTT
    89149  CAG *  9    25/27     CAG CAA AAG CAG CAG CAG CAG CAG CAG
   101781  GCA *  7    19/21     GCA GCG GCA GCA GCA GGA GCA
   115025  GCT *  8    22/24     GCT GCT GCT ACT GCT GCT GCT GCC
   118448  CAG *  7    19/21     CAG GAG CAG CAG CAG CAG CAA
   121296  TAA *  7    19/21     TAA CAA TAA TAA CAA TAA TAA
   135660  CAG *  7    19/21     CAG CAG CAG CAA CAG CAG GAG
   180629  ATT *  7    20/21     ATT ATT ATT AGT ATT ATT ATT
   183452  GCT * 11    31/33     GCT GCT GCT GCT GCT GTT GCT GCT GCT GCT GCA
   184356  TGA * 11    30/33     TGA TGA TGA TGA TGA TGA TGA TAA TGT TGA TGG
   202219  GTT *  7    20/21     GTT GTT GTT GTT TTT GTT GTT
   202759  ATG * 11    30/33     ATG ATG ATG ATG ATG ATG ATG ATG ACG ACG TTG
   223594  GCA * 15    41/45     GCA GTG GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCT ACA
   229324  TGC *  8    22/24     TGC TGC TGG TGC TGC TGC TGT TGC
   243477  AGC *  8    22/24     AGC AGC AGC AGC AGC AGC GGC GGC
   243504  AGC *  8    22/24     AGC AGC AAC AGT AGC AGC AGC AGC
   243656  CAA *  7    19/21     CAA CAA CAA CAA CAA CAC CAC
   243778  AGC * 12    33/36     AGC AGC AGC AGC AGC AGC AGC AGC GAC AGC AGC AAC
   243836  GCA * 11    30/33     GCA ACA GCA GCA GCG GCA GCA GCA GCA GCA GTA
   243903  CAC *  7    19/21     CAC CAC CAG CAC CAC CAC GAC
   254981  GCA *  7    20/21     GCA GCA GCA GCA GCA GCA GCC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       286716 
 Total number of repeats detected..............       26 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  ATG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  AGC      3       2       1       0       0       0       0       0       0       0       0       0       0   
  TAA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      4       2       1       1       0       0       0       0       0       0       0       0       0   
  GCT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      4       4       0       0       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   2 TAA +   2 ATT +   0 TTA +    0 TAT      =    4 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   1 CAA +   1 GTT +   0 TTG +    1 TGT      =    3 
   1 ATG +    1 TGA +   0 GAT +   1 CAT +   0 ATC +    0 TCA      =    3 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   1 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   3 AGC +    4 GCA +   4 CAG +   2 GCT +   0 CTG +    1 TGC      =   14 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   1 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7295423|gb|AE003565.1|AE003565 Drosophila melanogaster genomic scaffold 142000013386050 section 52 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    10572  TGC *  7    19/21     TGC TGT TGC TGC TGC AGC TGC
    13741  GAG *  7    19/21     GAG GAG GAG GAG GAG GCT GAG
    43515  CTG *  7    19/21     CTG TTG TTG CTG CTG CTG CTG
    58277  TCA *  7    19/21     TCA TCA TCA TCA TCA TGA CCA
    70795  TGC *  9    25/27     TGC TGC TGC TGC TGC TGC TGC TTC AGC
    71883  TGC * 10    27/30     TGC TGT TGC TGC TGC TGC TGC TGT TGC TGT
    74291  TGC * 11    30/33     TGC TGT TGC TGT TGC TGC TGC TGC TGC TGC TGA
    76712  GTG *  7    19/21     GTG GTG GTA GTG GTG GTA GTG
    79412  TGT *  7    19/21     TGT GGT TGT TGT TGT AGT TGT
    90302  CGT *  7    19/21     CGT TGT CGT CGT CAT CGT CGT
    90636  GCT *  7    19/21     GCT GCT CCT GCT GCT CCT GCT
    90673  CTC *  9    25/27     CTC CAC CTC CTC CTG CTC CTC CTC CTC
    93527  CTG *  8    22/24     CTG CTG CTC CTG CTC CTG CTG CTG
   104292  ACA *  7    19/21     ACA GCA GCA ACA ACA ACA ACA
   105535  GGT *  7    19/21     GGT GGT GGT GGC GGT GTT GGT
   110925  CTC *  7    19/21     CTC CTT CTC CTC CTC CTA CTC
   117845  CAC *  7    19/21     CAC CGC CAC CTC CAC CAC CAC
   131196  GCA * 11    30/33     GCA GCA GCA GCA GCA GCA GCA GCA GCG GTT GCA
   138818  GCC *  7    19/21     GCC GCC GCC TCC GCC ACC GCC
   143810  ATT *  7    19/21     ATT ATT ATT ATC ATT ATC ATT
   164787  TGC *  8    22/24     TGC TGC TGT TGC TGC TGC TGT TGC
   164975  CTG * 11    30/33     CTG CTG CTG ATG CTG CTG TTG CTG CTG CTG ATG
   166701  CCT *  7    19/21     CCT GAT CCT CCT CCT CCT CCT
   167490  CCT *  7    19/21     CCT CCG CCT CTT CCT CCT CCT
   173428  CAT *  7    19/21     CAT CAT CAT CAT CAT CAT AAC
   175576  AAC *  8    22/24     AAC AAC AAC AAC AAC AAG TAC AAC
   180080  CTG *  9    25/27     CTG CTG CTG CGG CTG CTG CTG CTG CTA
   187964  CAA *  8    22/24     CAA CAA CAA CAG CAA CAG CAA CAA
   198530  TTG * 10    27/30     TTG TAC TTG TTG TTG TTG TTG TTG TTG TCG
   241174  TGC *  7    19/21     TGC TGC TGC GGC TGC TGT TGC
   241198  TGC * 16    44/48     TGC TGC TGC TGT TGT TGC TGC TGC TGC TGC TGC TGC TGC TGC TGG GGC
   245452  CAG *  7    20/21     CAG GAG CAG CAG CAG CAG CAG
   263135  TAA * 10    27/30     TAA TAA TAC TAA TAA TAA TAA TAG TAA TAG
   273629  ACC *  7    19/21     ACC ACA ACC ACC ACC ACC ACG
   285793  TTG *  7    20/21     TTG TTG TTG TTG TTG TTG TGG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       286782 
 Total number of repeats detected..............       35 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TTG      2       1       1       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      7       4       2       0       1       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      4       3       1       0       0       0       0       0       0       0       0       0       0   
  CTC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   1 TAA +   1 ATT +   0 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    1 ACA +   1 CAA +   0 GTT +   2 TTG +    1 TGT      =    6 
   0 ATG +    0 TGA +   0 GAT +   1 CAT +   0 ATC +    1 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   1 GAG +   2 CCT +   2 CTC +    0 TCC      =    5 
   0 AGC +    1 GCA +   1 CAG +   1 GCT +   4 CTG +    7 TGC      =   14 
   0 ACG +    0 CGA +   0 GAC +   1 CGT +   0 GTC +    0 TCG      =    1 
   1 ACC +    0 CCA +   1 CAC +   1 GGT +   1 GTG +    0 TGG      =    4 
   0 GGC +    0 GCG +   0 CGG +   1 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7295378|gb|AE003564.1|AE003564 Drosophila melanogaster genomic scaffold 142000013386050 section 51 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    30444  TGT *  7    19/21     TGT TGT TGC TGT TGT CGT TGT
    30484  ACA *  7    19/21     ACA ACA GCA GCA ACA ACA ACA
    34560  GTG *  7    19/21     GTG GTG GTT GTG GTG GTG GTC
    35223  TGC * 11    30/33     TGC TGC TGC TGT TGT TGC TGC TGC TGC TGC TGT
    35262  TGC *  7    19/21     TGC TGT TGT TGC TGC TGC TGC
    35291  ATG *  8    22/24     ATG ATG GTG ATG ATG ATG ATG GTG
    66777  GAC *  7    19/21     GAC GAC GAC GAC GAC GAC AAA
    87069  CAG * 10    27/30     CAG CTG CAG CAG CAG CAG CAC CAG CAG CCG
    93914  GAC *  7    19/21     GAC GAC GAC GTC GAC GAC GGC
    96236  TGC *  7    20/21     TGC TGC TGC TGC TGG TGC TGC
    97048  ATG *  8    22/24     ATG GTG ATG ATG ATG ATG GTG ATG
   139636  CTT *  8    22/24     CTT CTT CTT CTT CTT CTG CTT CTG
   147226  GCA *  8    22/24     GCA GTA GCA GCA CCA GCA GCA GCA
   160568  TGC *  8    22/24     TGC TGC TGC TGC TGC TGC TGC TTG
   160636  GCT *  8    23/24     GCT GCT GCT GCT GCT GCT GCT GGT
   161326  AGC * 10    27/30     AGC AGC AGC AAC ATC AGC AGC AGC AGC AAC
   161503  CAG *  9    25/27     CAG CAG CAG CAG CAG CAA CAG CAA CAG
   163044  AGC *  7    19/21     AGC AAC AGC AAC AGC AGC AGC
   215682  TCT *  7    19/21     TCT TCT TGT CCT TCT TCT TCT
   233006  CTG *  7    19/21     CTG CTG CTG CTG CTG TTG GTG
   239824  TGT *  7    19/21     TGT TGT TGT TGT CGT TGT TGC
   246581  GAT * 13    36/39     GAT GAT AAT GAT AAT GAT GAT GAT GAT GAT GAT GAT GTT
   249042  TGC * 13    36/39     TGC TGC TGT TGC TGC TTC TGC TGC TGC TGC TGC TGC TGG
   249795  GTC * 13    36/39     GTC GTC GTC GTC GTC GTC GTC GTC GTC GTC GTC GCA ATC
   253305  GCC *  7    19/21     GCC AAC GCC GCC GCC GCC GCC
   255061  TGC * 10    27/30     TGC TGC TAT TGC TGC TGC TGC TGC TGC TGA
   258416  GCT *  7    19/21     GCT GCT GCC GCT GTT GCT GCT
   263627  TTG *  8    22/24     TTG TTG TTG CTG TTG TTG TTG TGG
   264333  TGG * 10    28/30     TGG TGG TGG TGG TGG TGG TGA TGG TGG TGC
   271156  CAT *  8    22/24     CAT CAT CAT CAT CAT CAT CGC CAT
   271384  CAG *  7    19/21     CAG CAG CAG CAG GAG CGG CAG
   271713  AGC * 10    27/30     AGC AGC AAC AGC AAC AGC AGC AGC AGC AAC
   272019  CAG * 15    43/45     CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAT CAC
   272308  CAG *  7    20/21     CAG CAG CAG CAG CAG CAG CAT
   272431  AGC *  8    22/24     AGC AGC AGC AGT AGA AGC AGC AGC
   272609  AGC * 11    31/33     AGC AGC AGC AGC AGC AAC AGC AGC AGC AGC AGT
   273014  AGC *  8    22/24     AGC AGC GCC AGC AGC AGC AGC AGC
   273059  AGC *  8    23/24     AGC ACC AGC AGC AGC AGC AGC AGC
   273983  GTT *  7    19/21     GTT TTT GTT GTT GTT GTT TTT
   274345  TTG *  8    22/24     TTG TTC TTG CTG TTG TTG TTG TTG
   280953  TGC *  7    20/21     TGC TGC TGC TGT TGC TGC TGC
   280977  TGC *  8    22/24     TGC TGC TGC TGC TGC TGC TGC CTC
   283746  TTG *  7    19/21     TTG TTG TTG TTT TTG TTT TTG
   284680  TGC *  7    19/21     TGC AGC TGC TGC TGC TGC TGT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       301840 
 Total number of repeats detected..............       44 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  AGC      7       4       3       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      3       3       0       0       0       0       0       0       0       0       0       0       0   
  TGT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGC      9       6       2       1       0       0       0       0       0       0       0       0       0   
  TCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       0       0       1       0       0       0       0       0       0       0       0       0   
  GAC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTC      1       0       0       1       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      5       3       1       1       0       0       0       0       0       0       0       0       0   
  CTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   1 CTT +   0 TTC +    1 TCT      =    2 
   0 AAC +    1 ACA +   0 CAA +   1 GTT +   3 TTG +    2 TGT      =    7 
   2 ATG +    0 TGA +   1 GAT +   1 CAT +   0 ATC +    0 TCA      =    4 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   7 AGC +    1 GCA +   5 CAG +   2 GCT +   1 CTG +    9 TGC      =   25 
   0 ACG +    0 CGA +   2 GAC +   0 CGT +   1 GTC +    0 TCG      =    3 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   1 GTG +    1 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   1 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7295346|gb|AE003563.1|AE003563 Drosophila melanogaster genomic scaffold 142000013386050 section 50 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    33432  TCC *  7    20/21     TCC TTC TCC TCC TCC TCC TCC
    35333  CTG *  7    19/21     CTG CTG CTG CTG TTG CGG CTG
    70915  CAT *  7    19/21     CAT CAT CAT TAT CAT CAT CGT
    85377  TGC *  8    23/24     TGC TGC TGC TGC TGC TGC TGC GGC
    90175  CTG *  9    25/27     CTG TTG CTG CTG TTG CTG CTG CTG CTG
    97362  GCA *  7    20/21     GCA GCA GCA GCA GCA GCA ACA
   101546  ATG *  8    23/24     ATG ATG ATG ATG ATG ATG ATG GTG
   102351  CTG * 12    33/36     CTG CTG CTG CTG CTG CTG CTT CTC CTG CTG CTG TTG
   103706  GCA *  7    20/21     GCA ACA GCA GCA GCA GCA GCA
   107001  TGC *  7    19/21     TGC TGC TGC TGC TGC TGC TCG
   107416  CAA *  7    19/21     CAA CAG CAG CAA CAA CAA CAA
   108158  CAG *  7    19/21     CAG CAG CAG CAA CAT CAG CAG
   108182  CAG *  8    23/24     CAG CAG CAG CAG CAG CAG CAG CAA
   114934  AGC *  7    20/21     AGC AGC AGC AGC AAC AGC AGC
   118117  TGC *  7    19/21     TGC TGG TGT TGC TGC TGC TGC
   122639  CAG * 11    32/33     CAG CAG CAG CAG CAG CAG CAA CAG CAG CAG CAG
   128313  TGC *  7    19/21     TGC TGC TGC TGG TGC TGC TGG
   138060  CTG *  7    20/21     CTG CTA CTG CTG CTG CTG CTG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       277325 
 Total number of repeats detected..............       18 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      4       4       0       0       0       0       0       0       0       0       0       0       0   
  TCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      3       2       1       0       0       0       0       0       0       0       0       0       0   
  CTG      4       3       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   1 CAA +   0 GTT +   0 TTG +    0 TGT      =    1 
   1 ATG +    0 TGA +   0 GAT +   1 CAT +   0 ATC +    0 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    1 TCC      =    1 
   1 AGC +    2 GCA +   3 CAG +   0 GCT +   4 CTG +    4 TGC      =   14 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7295332|gb|AE003562.1|AE003562 Drosophila melanogaster genomic scaffold 142000013386050 section 49 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    22595  ACT *  9    25/27     ACT ACT ACT ATT ACA ACT ACT ACT ACT
    31676  TCC * 10    27/30     TCC TCC TCC TCC TCC TCC TCC TCC CCA TCG
    60147  TGC * 10    27/30     TGC CGC TGC TGC TGC TGC TGC TTC TGC TTC
    80823  CAG *  7    19/21     CAG CAG CAA CAA CAG CAG CAG
   124585  TGC * 11    30/33     TGC TGC TGC TGC TGC TGC TGC TGC TAC TGC CGG
   128186  AGC *  7    20/21     AGC AGC AGC AGC AGC AGC AGT
   128263  GCA *  7    19/21     GCA GCA GCA GCG GCA GCA GTA
   135696  TGT *  7    19/21     TGT TGT TGT TGT TGT AGT CGT
   175865  CAG *  8    22/24     CAG CAA CTG CAG CAG CAG CAG CAG
   198577  CAT * 14    39/42     CAT CAT CAT CAT CAT CAT CGC CAT CAT CAT CAA CAT CAT CAT
   206829  GTT * 11    30/33     GTT GTT GCT GTT GTT GTT GTT GTT GTT GTT TAT
   216457  GCT *  8    22/24     GCT GCT GAT GCT GCT GCT GCC GCT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       249584 
 Total number of repeats detected..............       12 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       0       2       0       0       0       0       0       0       0       0       0       0   
  TCC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GTT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       0       0       1       0       0       0       0       0       0       0       0       0   
  CAG      2       2       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   1 GTT +   0 TTG +    1 TGT      =    2 
   0 ATG +    0 TGA +   0 GAT +   1 CAT +   0 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   1 ACT +   0 CTA +    0 TAC      =    1 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    1 TCC      =    1 
   1 AGC +    1 GCA +   2 CAG +   1 GCT +   0 CTG +    2 TGC      =    7 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7295317|gb|AE003561.1|AE003561 Drosophila melanogaster genomic scaffold 142000013386050 section 48 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    20507  CTT *  7    19/21     CTT CTT CTT CTT CTT CAT CCT
    52611  TCA *  7    19/21     TCA TCA TCA TCA TCA GCA GCA
    55540  CAG * 11    30/33     CAG CAG CAG CAG CAG CAG CAA CAG CAA CAG CAA
    55972  TGT * 11    30/33     TGT TAT TGT TGT TGT TGT TGT TGT TAT TAT TGT
    68615  GCT *  8    22/24     GCT GCT GCT GCT GCT GCT GTT GCA
    71931  GCA *  7    19/21     GCA ACA GCA ACA GCA GCA GCA
    76095  GGA *  7    19/21     GGA GGA GGA GGA TGA GGA CGA
    88663  TCG *  7    20/21     TCG TCG TCG CCG TCG TCG TCG
    89513  TGT *  8    23/24     TGT TGT TGT TGT TGT TGT TGT TGC
    95231  TGC *  7    19/21     TGC TGC TGC TGC TGC CGC TGT
    95985  CAG *  7    19/21     CAG CAG CAG CAG CAG TGG CAG
   111116  AAT * 11    30/33     AAT AAT AAT AAT AAT AAT AAA AAT AAT GAT AAG
   111445  GTG *  7    19/21     GTG GTG GTG GGG GTG GTG GTC
   118368  GCT *  8    22/24     GCT GCT GCT GCT GCT GCT GTT GCA
   120826  GTC *  7    19/21     GTC GTC GTC GTC GTC GTC TGC
   125551  CAC *  7    19/21     CAC CAC CGC CAC CGC CAC CAC
   131103  GCT *  8    22/24     GCT GCT GCT GCT GCT GCT GGT GGT
   131576  TTA *  8    22/24     TTA TTA TTA TTA TTA TTG TTG TTA
   131705  TGC *  8    22/24     TGC TGC TGC TGC TGA TGT TGC TGC
   131732  TGC *  7    19/21     TGC TGG TGT TGC TGC TGC TGC
   131756  TGC *  8    22/24     TGC TGC TGC TGC TGT TGC TGC TGG
   132991  ATG *  7    19/21     ATG ATG ATG ATG ATG GTG CTG
   149588  TGC *  7    20/21     TGC TGC TAC TGC TGC TGC TGC
   157448  CCT *  8    22/24     CCT CCT CCT CCT CCT CCT CCT CGA
   163976  CAA *  7    19/21     CAA CAA CAA CAA CAA CAG CAG
   171209  TCT *  8    22/24     TCT TCT TCT TCT TCT TCT TCC TCA
   172818  CAG *  7    19/21     CAG CAC CAA CAG CAG CAG CAG
   173008  AGC *  8    23/24     AGC AAC AGC AGC AGC AGC AGC AGC
   173135  GCA *  8    22/24     GCA GCA GCA GAA GAA GCA GCA GCA
   173165  GCA * 10    27/30     GCA GCA ACA GCA GCA GCA GCA GCA ACA GTA
   173602  GCA *  7    19/21     GCA ACA GCA GCA GCA GCA ACA
   173797  GCA *  7    19/21     GCA GCC GCA GCA ACA GCA GCA
   174269  CAG *  7    19/21     CAG CAG CAG CAG CAG CAG GCG
   174292  GCA *  7    19/21     GCA ACA GCA GCC GCA GCA GCA
   174611  CAG *  7    19/21     CAG CAA CAG CAG CAG CAG CAA
   174638  CAG *  8    23/24     CAG CAG CAG CAG CAG CAG CAG CAA
   183220  GCA *  8    22/24     GCA GCA GCA GCA ACA ACA GCA GCA
   183245  CAG *  7    19/21     CAG CAG CAG CAA CAA CAG CAG
   184159  ACG * 10    28/30     ACG ACG AAG ACG ACG ACG ACG ACG ACG AGG
   184626  CAG *  8    22/24     CAG CAG CAG CAG CAT CAT CAG CAG
   185949  ACA *  7    19/21     ACA ACA ACA ACA ACA ACA GCC
   185990  ACA *  7    19/21     ACA ACA ACA GCA ACA ACG ACA
   186086  CAC *  8    22/24     CAC CAC CAC CAC CAT CAT CAC CAC
   186168  ACA *  7    20/21     ACA ACA ACA ACA ACA ACA ATA
   191100  CAG * 10    27/30     CAG CAG CAG CAA CAA CAG CAG CAG CAG CAA
   191250  CAG * 12    33/36     CAG CAG CAG CAG CAG CAA CAA CAG CAG CAG CAA CAG
   191618  GCA * 11    30/33     GCA GCA GCA ACA ACA GCA GCA GCA GCA GCA GCC
   191829  CAG *  7    19/21     CAG CTG CAG CAG CAG CAA CAG
   192470  ACA *  7    19/21     ACA ACA ACA ACA ACA GCA GCA
   192663  CAG *  7    19/21     CAG CAG CAG CAT CAG CAG CAA
   237087  CAT * 14    39/42     CAT CAT CAT CAT CAT CAT CAT TAT CAT CAT TAT CAT CAG CAT
   240330  AGT * 11    30/33     AGT AGT GGT AGT AGT TGT AGT AGT AGT AGT ACT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       274307 
 Total number of repeats detected..............       52 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      4       4       0       0       0       0       0       0       0       0       0       0       0   
  ACG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  TGC      5       5       0       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      8       6       2       0       0       0       0       0       0       0       0       0       0   
  GCT      3       3       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       0       0       1       0       0       0       0       0       0       0       0       0   
  CAG     12       9       3       0       0       0       0       0       0       0       0       0       0   
  CAC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   1 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   1 CTT +   0 TTC +    1 TCT      =    2 
   0 AAC +    4 ACA +   1 CAA +   0 GTT +   0 TTG +    2 TGT      =    7 
   1 ATG +    0 TGA +   0 GAT +   1 CAT +   0 ATC +    1 TCA      =    3 
   1 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    1 
   0 AGG +    1 GGA +   0 GAG +   1 CCT +   0 CTC +    0 TCC      =    2 
   1 AGC +    8 GCA +  12 CAG +   3 GCT +   0 CTG +    5 TGC      =   29 
   1 ACG +    0 CGA +   0 GAC +   0 CGT +   1 GTC +    1 TCG      =    3 
   0 ACC +    0 CCA +   2 CAC +   0 GGT +   1 GTG +    0 TGG      =    3 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7295278|gb|AE003560.1|AE003560 Drosophila melanogaster genomic scaffold 142000013386050 section 47 of 54, complete sequence
<