Tri-Nucleotide Repeats in Genomic Sequences
Tri-Nucleotide Repeats in
Drosophila melanogaster Chromosome-Arm-3L Genomic Scaffolds
Genomic sequence
gi|7316100|gb|AE002584.1|AE002584 Drosophila melanogaster genomic scaffold 142000013386045, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7292550|gb|AE003483.1|AE003483 Drosophila melanogaster genomic scaffold 142000013386045 section 17 of 17, complete sequence
Position Repeat Coverage Repeat
1586 GTG * 7 19/21 GTG GTG GCG GTG GTG GTG GGG
3478 GGT * 7 19/21 GGT GGA AGT GGT GGT GGT GGT
31586 CAG * 7 19/21 CAG CAC CAG CAG CAG CGG CAG
32182 CAT * 8 22/24 CAT CAT CAT CAT CAT CAG AAT CAT
86743 TGC * 7 19/21 TGC TGC CGC TGC TGC AGC TGC
88482 GGT * 8 22/24 GGT GGG GGT GGT GGT TGT GGT GGT
124266 GAC * 8 22/24 GAC GAG GAC GAG GAC GAC GAC GAC
138449 CAG * 9 25/27 CAG CAG CAG CAG CAG CAG GAG CAA CAG
159057 AGC * 7 19/21 AGC AGC AGC AGC AGC CAC AGC
159200 TGC * 7 19/21 TGC TGT TGC TGC TGC TCC TGC
159494 GCC * 7 19/21 GCC GTT GCC GCC GCC GCC GCC
167767 ACA * 7 19/21 ACA ACA ACA ACA ACA ACA GAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 175489
Total number of repeats detected.............. 12
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 0 GCA + 2 CAG + 0 GCT + 0 CTG + 2 TGC = 5
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 2 GGT + 1 GTG + 0 TGG = 3
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7292521|gb|AE003482.1|AE003482 Drosophila melanogaster genomic scaffold 142000013386045 section 16 of 17, complete sequence
Position Repeat Coverage Repeat
2614 CAA * 7 19/21 CAA CAA CAA CAG TAA CAA CAA
3699 CTG * 12 33/36 CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTT TGG
12222 TGC * 8 24/24 TGC TGC TGC TGC TGC TGC TGC TGC
12429 AGC * 9 25/27 AGC AGA AGT AGC AGC AGC AGC AGC AGC
16701 CCT * 8 22/24 CCT CAT CCT CCT CCT CTT CCT CCT
42344 GCA * 8 23/24 GCA GCG GCA GCA GCA GCA GCA GCA
45684 TGC * 8 22/24 TGC TGC CGC TGC TGC TGC TGT TGC
46181 TGA * 8 22/24 TGA TGA TGA TGA TGA TGA TGC CGA
46265 AGA * 7 19/21 AGA AGA AGA AGA AGA AGC AGC
49932 CAT * 7 19/21 CAT CAT CGT CCT CAT CAT CAT
52289 ACA * 11 30/33 ACA CCA AGA ACA ACA ACA ACA ACA ACA ACA ATA
78977 GCA * 7 19/21 GCA GAA GCA GTA GCA GCA GCA
93263 CCT * 8 22/24 CCT CCT CCT CCT CCT CCT CCT TTT
93603 TCA * 10 27/30 TCA TCT TCA TCG TCA TCA TCA TCA TCA CCA
101283 GCA * 7 19/21 GCA AGA GCA GCA GCA GCA GCA
103514 GCA * 8 22/24 GCA GCA GCA GCA GCA GCA ACA TCA
103748 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAA CTG
105267 AGC * 12 33/36 AGC TGC AGC AGC AGC AGC AGC AGC AGC AGC AAC AGG
121641 GAT * 10 27/30 GAT GAT TAT AAT GAT GAT GAT GAT GAT GAG
131610 ACA * 7 19/21 ACA ACA AGA GCA ACA ACA ACA
138564 GCA * 7 19/21 GCA GCA GCA CCA GCA GCA GCT
140278 GCA * 7 19/21 GCA ACA GCA ACA GCA GCA GCA
140303 CAG * 8 22/24 CAG CAG CAT CAG CAG CAG CAG CAT
142283 GAG * 10 27/30 GAG GAG GAG GAG GAG GAG GAG GAG CAA CAG
162719 CAG * 7 19/21 CAG CAG CGG CAA CAG CAG CAG
167415 ACA * 9 25/27 ACA ACT ACA ACA ACA ACA AAA ACA ACA
176341 GAG * 7 19/21 GAG GAG GAG GAG GAG ACG GAG
206292 TGC * 8 22/24 TGC TGC TGC TGA TGC TGC TGC GGC
206448 TGT * 9 25/27 TGT TGT TGT TGC AGT TGT TGT TGT TGT
231580 AGC * 7 19/21 AGC AGC AGC AGC AGG AGC TGC
243607 ATT * 7 19/21 ATT ATT ATT ATT ATT ATT CAT
247889 ACA * 8 22/24 ACA ACA ACA GCA ACA AGA ACA ACA
291839 TTA * 7 19/21 TTA CTA TTA TTA TTA TTA TTT
-----------------------------------------------------------------------------------------
Total sequence length......................... 301682
Total number of repeats detected.............. 33
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGA 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 3 2 1 0 0 0 0 0 0 0 0 0 0
ACA 4 3 1 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 3 3 0 0 0 0 0 0 0 0 0 0 0
TCA 1 0 1 0 0 0 0 0 0 0 0 0 0
GAT 1 0 1 0 0 0 0 0 0 0 0 0 0
GAG 2 1 1 0 0 0 0 0 0 0 0 0 0
GCA 6 6 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 3 3 0 0 0 0 0 0 0 0 0 0 0
CTG 1 0 1 0 0 0 0 0 0 0 0 0 0
CCT 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 1 ATT + 1 TTA + 0 TAT = 2
0 AAG + 1 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 1
0 AAC + 4 ACA + 1 CAA + 0 GTT + 0 TTG + 1 TGT = 6
0 ATG + 1 TGA + 1 GAT + 1 CAT + 0 ATC + 1 TCA = 4
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 2 GAG + 2 CCT + 0 CTC + 0 TCC = 4
3 AGC + 6 GCA + 3 CAG + 0 GCT + 1 CTG + 3 TGC = 16
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7292481|gb|AE003481.1|AE003481 Drosophila melanogaster genomic scaffold 142000013386045 section 15 of 17, complete sequence
Position Repeat Coverage Repeat
6837 TTA * 8 22/24 TTA TTT TTA TTA TTA TTA TTT TTA
34323 CAT * 12 33/36 CAT CAT CAA CAT CAA CAT CAT CAT CAT CAT CAC CAT
36564 GCA * 8 22/24 GCA GCA GCA ACA GCA GCA GCG GCA
39297 TAT * 9 25/27 TAT TAT TAT TAT TAT TAT TTA TAT TAT
53811 AAT * 7 21/21 AAT AAT AAT AAT AAT AAT AAT
94374 GCA * 8 22/24 GCA GCA GCA ACA TCA GCA GCA GCA
113566 CCA * 7 19/21 CCA ACA CCA ACA CCA CCA CCA
125524 AAC * 7 19/21 AAC AAC AGC AAC AAC ATC AAC
130874 TCC * 8 22/24 TCC TCC TCC TCC TCC TCC ACC GCC
131321 ACC * 7 19/21 ACC ACC ACC GCC ACC ACC TCC
153175 TGG * 8 22/24 TGG TGG GGG TGG AGG TGG TGG TGG
153566 TGA * 7 19/21 TGA TGA TGA TGA TGG TGG TGA
154483 GTG * 7 19/21 GTG GTT GTA GTG GTG GTG GTG
158957 GGT * 7 20/21 GGT GGT GGT GGT GGG GGT GGT
159019 TGG * 7 19/21 TGG CGG TGG TGG TGG AGG TGG
159242 GGT * 8 23/24 GGT GGT GGT GGT GGT GGG GGT GGT
159325 TGG * 7 19/21 TGG TGG TGG TGG GGG TGG TGT
162776 AAT * 7 19/21 AAT AAC AAT AAT AAT AAA AAT
193977 GTC * 7 19/21 GTC GTC ATC GTC GTC GTC ATC
196093 TGA * 7 19/21 TGA AGA TGA TGA TGC TGA TGA
209158 ATC * 7 19/21 ATC ATC ATC GCC ATC ATC ATC
235885 CTT * 7 19/21 CTT CTT CTT CTT CCT CTT CAT
251907 GCT * 8 22/24 GCT GCT GCT GCT GCT GCT GCT TTT
268929 CAG * 9 25/27 CAG CAG CAG CAG CAG CAG CAG CAG ATG
268968 CAG * 8 22/24 CAG CAG CAG CAG CAG ATG CAG CAG
269453 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CAC
276804 CAC * 7 19/21 CAC CAC CAC CAC CAC CCC CCC
283557 CAG * 8 23/24 CAG CCG CAG CAG CAG CAG CAG CAG
283589 GCA * 10 27/30 GCA GCA GCA ACA ACA GCA GCA GCA GCA ACA
303655 AGC * 7 19/21 AGC AGC AGC AGC AGC AGC TGT
-----------------------------------------------------------------------------------------
Total sequence length......................... 319765
Total number of repeats detected.............. 30
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 2 2 0 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 2 2 0 0 0 0 0 0 0 0 0 0 0
TGG 3 3 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTC 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCA 3 2 1 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 0 1 0 0 0 0 0 0 0 0 0 0
CAG 4 4 0 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
2 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 1 TAT = 4
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 1
1 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 2 TGA + 0 GAT + 1 CAT + 1 ATC + 0 TCA = 4
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 1 TCC = 1
1 AGC + 3 GCA + 4 CAG + 1 GCT + 0 CTG + 0 TGC = 9
0 ACG + 0 CGA + 0 GAC + 0 CGT + 1 GTC + 0 TCG = 1
1 ACC + 1 CCA + 1 CAC + 2 GGT + 1 GTG + 3 TGG = 9
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7292415|gb|AE003480.1|AE003480 Drosophila melanogaster genomic scaffold 142000013386045 section 14 of 17, complete sequence
Position Repeat Coverage Repeat
11879 TGC * 9 25/27 TGC TGC TGC TGC TGT TGT TGC TGC TGC
12361 GCA * 7 19/21 GCA GCA ACA ACA GCA GCA GCA
18240 GCA * 7 20/21 GCA GCA GCA GCA GCA ACA GCA
44726 ACA * 7 19/21 ACA ACA ACA ACA ACC ACA ATA
52715 ATG * 8 22/24 ATG ATG ATC ATA ATG ATG ATG ATG
94331 AGG * 8 22/24 AGG AGG AGG AGA AGC AGG AGG AGG
95887 ATA * 7 19/21 ATA ATA ATA ATA ATA ATG AGA
101471 GCT * 12 34/36 GCT GCT GCT GCT GCT GCT GCT GTT GCT GCT GCT GAT
104222 CAG * 10 27/30 CAG CAA AAG CAG CAG CAG CAG CAG CAG CAC
105513 TGA * 7 19/21 TGA TGG TGA TGG TGA TGA TGA
117141 CAG * 7 20/21 CAG CAG CAG CAG CAG CAG GAG
143368 ATC * 7 20/21 ATC ATC ATC ATC ATC ATC ATT
147229 CGC * 8 22/24 CGC CGC CCC CGC CGC CGC CGC CGT
168262 CTC * 7 19/21 CTC CTG CTC CTC CTC TTC CTC
169723 ATC * 7 19/21 ATC ATC AAC AGC ATC ATC ATC
255152 TCC * 7 19/21 TCC TCC TCA TCG TCC TCC TCC
256266 AAC * 8 22/24 AAC AAG AAC AAC AAT AAC AAC AAC
257277 CTC * 7 19/21 CTC CTC CTC CTC CTC CTT CCC
-----------------------------------------------------------------------------------------
Total sequence length......................... 310450
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 2 2 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
GCT 1 0 1 0 0 0 0 0 0 0 0 0 0
CAG 2 1 1 0 0 0 0 0 0 0 0 0 0
CTC 2 2 0 0 0 0 0 0 0 0 0 0 0
CGC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 1 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 2
1 ATG + 1 TGA + 0 GAT + 0 CAT + 2 ATC + 0 TCA = 4
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 0 GAG + 0 CCT + 2 CTC + 1 TCC = 4
0 AGC + 2 GCA + 2 CAG + 1 GCT + 0 CTG + 1 TGC = 6
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 1 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7292381|gb|AE003479.1|AE003479 Drosophila melanogaster genomic scaffold 142000013386045 section 13 of 17, complete sequence
Position Repeat Coverage Repeat
25348 CTG * 7 19/21 CTG ATG CTG CTG CTG GTG CTG
25416 GCA * 7 19/21 GCA ACT GCA GCA GCA GCA GCA
25437 ACA * 7 19/21 ACA ACA ACA ACA ACA ACA ATC
35554 TAG * 8 24/24 TAG TAG TAG TAG TAG TAG TAG TAG
41012 AGC * 13 36/39 AGC AGC AGC AGC AGC AGC AGC AGC AGC AGA AAG AGC AGC
47333 CAT * 7 19/21 CAT CAT CAT CAC CAT CAC CAT
47364 ATC * 8 22/24 ATC ATC ATC ATC ATC ATC ATT AGC
56582 TGC * 7 19/21 TGC TGA TGC TGC TGC TGT TGC
56639 TGT * 7 19/21 TGT TGC TGT TGT TGT TGC TGT
94049 CTG * 7 19/21 CTG CTG CTG CTG CTG CTG CGC
94327 GCT * 8 22/24 GCT GCA GCT GCT GCT GTT GCT GCT
94361 CTG * 7 19/21 CTG TTG CTG CTG CTG TTG CTG
94643 CTG * 7 19/21 CTG CTG CTG CTG CAG CTG TTG
101330 AAC * 7 19/21 AAC AAC AAA AAG AAC AAC AAC
113630 GCT * 13 36/39 GCT GCT GTT GCT GCT GCT GCT GCT GCG GCT GCT GCT GCG
113907 GCT * 10 28/30 GCT GCT GCT GCT GTT GCT GCT GCT GCT GCA
113945 TGC * 8 24/24 TGC TGC TGC TGC TGC TGC TGC TGC
114033 GCT * 7 19/21 GCT GGT GGT GCT GCT GCT GCT
139181 GCA * 14 38/42 GCA GCA GCA AAA GCA GCA GCA GCA GCA GCA GCA GCA ACA TCA
139224 GCA * 7 19/21 GCA GCA GCA GCA GCA GCA ACT
139281 AGC * 7 20/21 AGC CGC AGC AGC AGC AGC AGC
143336 CAG * 7 19/21 CAG CTG CAG CAG CAG CAG CAT
145543 GCA * 12 33/36 GCA ACA GCA GCA GCA ACA GCA GCA GCA ACA GCA GCA
147790 CAA * 7 20/21 CAA CAA CAA TAA CAA CAA CAA
151277 CAG * 8 22/24 CAG CAG CAC CAT CAG CAG CAG CAG
152798 GCC * 7 19/21 GCC GCC GCT GCC GCC GCC GCA
168784 ACA * 7 19/21 ACA ACA ACA ACA ACA ACA ATT
179090 GCA * 11 31/33 GCA GCA GCG GCA GCA GCA GCA GCA GCA TCA GCA
179317 GCA * 14 38/42 GCA GCA GCA GCA GCA GCA GCA ACT GCA ACA GCA GCA GCA ACA
180164 TGC * 7 19/21 TGC TGC TGC TGC TGC TGC TTG
180409 TGC * 10 27/30 TGC TGC TGC CGC TGC TGC TGC TGC TGT TGT
180454 CTG * 8 22/24 CTG CTG CTG CTT CTG CGG CTG CTG
181027 GAT * 7 19/21 GAT GAT GAT GAT GAT GAT GGG
190418 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CAA
208079 AAT * 7 19/21 AAT AAA AAA AAT AAT AAT AAT
257800 CAG * 10 28/30 CAG CAG CAG CAG CAG CAA CAG CAA CAG CAG
261791 GGT * 8 22/24 GGT GGT AGT GGC GGT GGT GGT GGT
271882 CAT * 11 30/33 CAT CAT CAT CAT CGT CAT CGT CAT CAT TAT CAT
279514 TGG * 7 19/21 TGG TGG TGG TGG TGG TGC TGC
286703 CTG * 8 22/24 CTG CTG CTG TTG CTG CTG CTG ATG
286981 AGC * 10 27/30 AGC AGC AGC AAC ATC AGC AGC AGC AGC AAC
290144 CAA * 7 19/21 CAA CAA CAA AAA CAA CAA CAG
292547 GGT * 7 20/21 GGT GGT GGT GGT AGT GGT GGT
292580 TGA * 10 27/30 TGA TGA TGA TGA TGG TGA TGA CGA TGA TGT
297580 CAA * 8 22/24 CAA CAA CAA CAA CAA TAA TAA CAA
298900 CAG * 7 19/21 CAG CAA CAG CAG CAG GAG CAG
300739 GCA * 15 41/45 GCA GCA GCA GCA ACA GCA GCA GCA GCA GCA GCA TCA GCA TCA CCA
300832 GCA * 7 20/21 GCA GCA GCA ACA GCA GCA GCA
-----------------------------------------------------------------------------------------
Total sequence length......................... 309883
Total number of repeats detected.............. 48
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 3 1 1 1 0 0 0 0 0 0 0 0 0
ACA 2 2 0 0 0 0 0 0 0 0 0 0 0
TAG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 0 1 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 4 3 1 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCA 8 3 2 3 0 0 0 0 0 0 0 0 0
GCT 4 2 1 1 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 3 3 0 0 0 0 0 0 0 0 0 0 0
CAT 2 1 1 0 0 0 0 0 0 0 0 0 0
CAG 5 4 1 0 0 0 0 0 0 0 0 0 0
CTG 6 6 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 2 ACA + 3 CAA + 0 GTT + 0 TTG + 1 TGT = 7
0 ATG + 1 TGA + 1 GAT + 2 CAT + 1 ATC + 0 TCA = 5
0 AGT + 0 GTA + 1 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
3 AGC + 8 GCA + 5 CAG + 4 GCT + 6 CTG + 4 TGC = 30
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 2 GGT + 0 GTG + 1 TGG = 3
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7292360|gb|AE003478.1|AE003478 Drosophila melanogaster genomic scaffold 142000013386045 section 12 of 17, complete sequence
Position Repeat Coverage Repeat
12853 TCC * 7 19/21 TCC TCC TCC TCC TCC CCC TCG
13710 CAA * 11 30/33 CAA CAA CAA CAA CAA CAA CAA CAA CTA TAA GAA
18099 GCC * 8 22/24 GCC GCC GCC GCC GCC GTT GCC GCC
19027 AAC * 8 23/24 AAC AAC AAC AAC AAC AAC AAC AAT
25392 TTG * 12 33/36 TTG CTG TTG TTG GTG TTG TTG TTG TTG ATG TTG TTG
25605 CAA * 7 19/21 CAA TAA CAA CAA CGA CAA CAA
25711 CAA * 7 19/21 CAA CAA CAA CAG AAA CAA CAA
35179 TGC * 18 49/54 TGC TGC AGA TGC TGC TGC TGC TGC TGC TGT TGC TGC TGC TGC TGT TGC TGT TGC
35490 GTT * 11 30/33 GTT GTT GTT GAT GCT GTT GTT GTT GTT GTT GCT
36731 TTA * 10 27/30 TTA TGA TTA TTA TTA TTA TAA TTA TTA TTT
37869 ATT * 7 19/21 ATT ATT ATT ATT ATT ATT GTG
40218 GCA * 8 22/24 GCA GCC GCA GCA GCA GCA TCA GCA
40243 CAG * 7 20/21 CAG CAG CAG CAG CAG CAT CAG
44272 CAT * 7 19/21 CAT CAT CAT CAG CAT CAG CAT
44602 CAA * 7 19/21 CAA CAG CAA CAG CAA CAA CAA
59675 GCA * 9 25/27 GCA GCA GCA GCA GCA GCC GCA ACA GCA
59742 CAG * 7 19/21 CAG CGG CAG CAG CAG CAG CAT
64401 TGT * 7 19/21 TGT TGT TGT TGT TGT TGT GCT
71083 GAG * 7 19/21 GAG GAG GAG GAG GAA GAC GAG
76929 ATA * 14 38/42 ATA ATA ATA ATA ATA ATA ATA ATA ATA ACA ATA ACC ATA ATG
87521 CAT * 10 27/30 CAT GAT CAT CAT CAT CCT CAT CAT CAT CGT
89973 GCA * 7 19/21 GCA GCA GCT GCA GCG GCA GCA
103441 AAT * 8 22/24 AAT AAT AAT AAT TAT AAT AAT TAT
106850 GTT * 7 20/21 GTT GTT GTT GTT GTT GTT GCT
131585 TTG * 9 25/27 TTG TTC TTG TTG TTG TTG TTG TTG CTG
193231 ATT * 7 19/21 ATT ATT ATT TTT ATT TTT ATT
209571 CAC * 7 19/21 CAC CAC CAT CAC CAC CAC CAT
275851 AAC * 7 19/21 AAC AAC AAC AAC AAC ACC AGC
275886 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CAA
275985 CCA * 8 22/24 CCA CCA CCA CCT GCA CCA CCA CCA
277132 GCA * 8 22/24 GCA GCA GCA ACA GCA GCA GCA ACA
277302 CAG * 15 41/45 CAG CAG CAG CAA CAG CAG CAG CAG CAG CAG CAG CAA CAC CAG CAA
277475 GCA * 8 22/24 GCA GCA GCA GCA TCA ACA GCA GCA
277942 CAG * 8 22/24 CAG CAG CAA CAG CAA CAG CAG CAG
300689 GCA * 10 27/30 GCA GCA GCA ACA GCA GCA GCA ACA GCA ACA
-----------------------------------------------------------------------------------------
Total sequence length......................... 317218
Total number of repeats detected.............. 35
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 2 2 0 0 0 0 0 0 0 0 0 0 0
ATA 1 0 0 1 0 0 0 0 0 0 0 0 0
ATT 2 2 0 0 0 0 0 0 0 0 0 0 0
TTA 1 0 1 0 0 0 0 0 0 0 0 0 0
TTG 2 1 1 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 0 0 0 1 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 2 1 1 0 0 0 0 0 0 0 0 0 0
GCA 6 5 1 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 4 3 1 0 0 0 0 0 0 0 0 0 0
CAT 2 1 1 0 0 0 0 0 0 0 0 0 0
CAG 5 4 0 1 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 1 ATA + 0 TAA + 2 ATT + 1 TTA + 0 TAT = 5
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
2 AAC + 0 ACA + 4 CAA + 2 GTT + 2 TTG + 1 TGT = 11
0 ATG + 0 TGA + 0 GAT + 2 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 1 TCC = 2
0 AGC + 6 GCA + 5 CAG + 0 GCT + 0 CTG + 1 TGC = 12
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 1 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7292303|gb|AE003477.1|AE003477 Drosophila melanogaster genomic scaffold 142000013386045 section 11 of 17, complete sequence
Position Repeat Coverage Repeat
6137 GCT * 7 19/21 GCT GCT GCC GCT GCT GCT GGT
21186 CAG * 10 27/30 CAG CCG CCG CAG CAG CAG CAG CAG CAG CCG
43300 GCA * 7 19/21 GCA GTA GCA GCA GCG GCA GCA
86602 CAG * 7 20/21 CAG CAG CAG CAG CAA CAG CAG
86659 CAG * 8 22/24 CAG CAG CAG CAG CAG TTG CAG CAG
86697 GCA * 10 27/30 GCA GCA GCA GCA ACA ACA GCA GCA GCA CCA
88673 CAG * 7 19/21 CAG CAG CAG CAT CTG CAG CAG
88703 CAG * 8 22/24 CAG CAG CAG CAA CAG CAG GAG CAG
163251 CAG * 7 19/21 CAG CAG CAG CAG CAG CAG ACG
165743 TCG * 7 19/21 TCG TCC GCG TCG TCG TCG TCG
166461 CAG * 8 22/24 CAG CAC CAA CAG CAG CAG CAG CAG
167154 CAG * 8 22/24 CAG CAA CAG CAG CAG CAG CAG CTG
171860 AAC * 7 20/21 AAC AAC AAC AAC AAC AAC AAA
210267 GAC * 7 19/21 GAC GAC GAC GAC GAC GAG GAG
223406 GAG * 7 19/21 GAG GAG GAT GAT GAG GAG GAG
225024 AAG * 7 21/21 AAG AAG AAG AAG AAG AAG AAG
302000 CAA * 8 22/24 CAA CAA CAA CAA CAG CAG CAA CAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 304734
Total number of repeats detected.............. 17
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 1 1 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 8 7 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
1 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 1
1 AAC + 0 ACA + 1 CAA + 0 GTT + 0 TTG + 0 TGT = 2
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 1
0 AGC + 2 GCA + 8 CAG + 1 GCT + 0 CTG + 0 TGC = 11
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 1 TCG = 2
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7292275|gb|AE003476.1|AE003476 Drosophila melanogaster genomic scaffold 142000013386045 section 10 of 17, complete sequence
Position Repeat Coverage Repeat
31602 CTG * 8 22/24 CTG CTG CTG CTG CGG CAG CTG CTG
32610 CTG * 15 41/45 CTG CTG CTG TTG CTG CTG CTG CTG CTG CTG TTG CTG TTG TTG CTG
32656 TGC * 10 27/30 TGC TGC TGC TGC TGC TGT TGC TGC TGT AGC
36896 CTG * 7 19/21 CTG CTG TTG CTG CTG CTG TTG
36942 TGC * 7 19/21 TGC TGC TGC TGC TGC TGC AGG
37079 CTG * 7 19/21 CTG CTG CGG CTG CTG CTG CAG
37205 CTG * 8 22/24 CTG CTG CTG CTG TTG TTG CTG CTG
37334 CTG * 8 22/24 CTG GTG TTG CTG CTG CTG CTG CTG
37540 TGT * 7 19/21 TGT TGT TGT TGC TGT TGC TGT
37692 TGC * 10 27/30 TGC TGC TGC TGC TGT TGC TGT TGC TGC TGT
39438 TGC * 7 19/21 TGC TGC TGC TGC TGC TGT TGG
39462 TGC * 8 22/24 TGC TGC TGT TGC TGC TGC GGC TGC
39540 TGC * 14 39/42 TGC TGC TGG TAC TGC TGC TGC TGC TGC TGT TGC TGC TGC TGC
46925 ACA * 8 22/24 ACA ACA ACG ACA ACA ACA ACA ACC
63765 CTG * 7 19/21 CTG CCG CTG CTT CTG CTG CTG
65694 TTA * 7 19/21 TTA TTA TTA TTA TTA TTA TAT
66471 CTT * 8 22/24 CTT CTT CTG CTT CTT CTT CTT CTG
78025 CAA * 7 19/21 CAA CAA CAA CAG CAG CAA CAA
79691 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG AAG AAG
81675 GTT * 8 22/24 GTT GAT GTT GTT GTT GAT GTT GTT
86453 AAT * 9 25/27 AAT AAT AAT AAT AAT AAT AAT AAC AAG
90827 TGC * 7 19/21 TGC TGC TGC TGC TCT TGC TGC
102639 TGT * 7 19/21 TGT TGC TGC TGT TGT TGT TGT
108582 TCA * 8 22/24 TCA ACA TCA TCA TCA TCG TCA TCA
114237 TGC * 8 22/24 TGC TGC TGC TGT TGT TGC TGC TGC
114375 GCT * 8 22/24 GCT GTT GCT GTT GCT GCT GCT GCT
114437 TGC * 18 50/54 TGC TGC TGC TGC TGC TGC TGC TGT TGC TGC TGC TGC TGC TGA TGT TGC TGC TGG
114497 TGC * 8 22/24 TGC TGC TGC TGT TGC TGT TGC TGC
116510 GAT * 7 19/21 GAT GAT GAT GAT GTT GAT GAG
124999 TGT * 7 19/21 TGT TGC TGT TGT TCT TGT TGT
150030 TTG * 7 19/21 TTG TTG TTG TTA TTG TTA TTG
155386 AGT * 7 19/21 AGT AGT AGT GGT AGT AGT GGT
163160 AGC * 7 19/21 AGC AGC AGC AGC AGC AGT AGA
167299 AGC * 14 38/42 AGC AGC AGC AGC AAC AGC AGC AGC AGC AAC AGC AGC AAC TGC
167347 AGC * 7 19/21 AGC AGC ATC AGC AGC AGC AAC
190084 GTC * 7 19/21 GTC GCC GTC GTC ATC GTC GTC
191331 GCA * 8 22/24 GCA GCA ACA GCA ACA GCA GCA GCA
209527 ATA * 18 50/54 ATA ATA ACA ATA ATA ATA ACA ATA ATA ATA ATA ATA TTA ATA ATA ATT ATA ATA
231194 GTG * 10 28/30 GTG GTG GTG CTG GTG GTG GTG GGG GTG GTG
257624 CGA * 7 19/21 CGA CCA CGA TGA CGA CGA CGA
278443 AAC * 8 22/24 AAC AAA AAC AAC ACC AAC AAC AAC
278571 ACA * 7 19/21 ACA GCA ACA ACA ACC ACA ACA
-----------------------------------------------------------------------------------------
Total sequence length......................... 306945
Total number of repeats detected.............. 42
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 0 0 0 1 0 0 0 0 0 0 0 0
AGT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 3 2 0 1 0 0 0 0 0 0 0 0 0
ACA 2 2 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 3 3 0 0 0 0 0 0 0 0 0 0 0
TGC 10 6 2 1 1 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 0 1 0 0 0 0 0 0 0 0 0 0
GTC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 7 6 0 1 0 0 0 0 0 0 0 0 0
CGA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 1 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 3
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 1
1 AAC + 2 ACA + 1 CAA + 1 GTT + 1 TTG + 3 TGT = 9
0 ATG + 0 TGA + 1 GAT + 0 CAT + 0 ATC + 1 TCA = 2
1 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
3 AGC + 1 GCA + 1 CAG + 1 GCT + 7 CTG + 10 TGC = 23
0 ACG + 1 CGA + 0 GAC + 0 CGT + 1 GTC + 0 TCG = 2
0 ACC + 0 CCA + 0 CAC + 0 GGT + 1 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7292236|gb|AE003475.1|AE003475 Drosophila melanogaster genomic scaffold 142000013386045 section 9 of 17, complete sequence
Position Repeat Coverage Repeat
12623 CAG * 7 19/21 CAG CAG CAG TCG CAG CAG CAG
21934 GGT * 10 28/30 GGT GGT CGT GGT AGT GGT GGT GGT GGT GGT
34886 TGC * 7 19/21 TGC AGT TGC TGC TGC TGC TGC
55918 TGC * 7 19/21 TGC TGG TGG TGC TGC TGC TGC
57156 CTG * 10 27/30 CTG CTG CTG TTG TTG CTG CTG CTG CTG ATG
69537 TCA * 7 20/21 TCA TCA TCA TCA TCA TCA TCG
103449 TGT * 11 30/33 TGT TGT TGT TGT TGT TGT TGT TGG TGT GTT TGT
107428 CCG * 8 22/24 CCG CCT CCT CCG CCG CCG CCG CCG
109108 CTG * 8 22/24 CTG CTG CTG CTG TTG CTG CTG CAG
109133 TGC * 8 23/24 TGC TGC TGC TGC TGC TGC TGT TGC
112865 GTA * 8 22/24 GTA GTA GTA GTA GTA GTA GTC GTG
113754 GCC * 7 19/21 GCC GCC GCT GCT GCC GCC GCC
123204 CCT * 8 22/24 CCT CCT CCT ACT CCT CCC CCT CCT
123228 CCA * 8 22/24 CCA CCA CCA CCA CCA CCA CCT CCT
125648 CAA * 9 25/27 CAA CTG CAA CAA CAA CAA CAA CAA CAA
125704 AAC * 7 19/21 AAC AAC AAC AAC AAC AAC ATT
125839 GCT * 7 20/21 GCT GCT GCT GCT GCT GCT GCA
140111 AGC * 7 19/21 AGC AAC TGC AGC AGC AGC AGC
161190 CAA * 7 20/21 CAA CAA CAA CAC CAA CAA CAA
164940 CTC * 8 22/24 CTC CTC CTT CTC CTC CTC CTG CTC
183381 ACA * 8 22/24 ACA ACA ACA ACA CCA GCA ACA ACA
185261 GAT * 8 22/24 GAT GAT GAG GAT GAT GAT GAT GAC
185963 GAC * 8 23/24 GAC GAC GAA GAC GAC GAC GAC GAC
193546 CCA * 11 30/33 CCA CCC CCA CCA CCA CCA CCA CCA CCA CCA CGG
259424 ATA * 7 19/21 ATA ATA ATA ATA ATA ATC GTA
266349 CCT * 7 19/21 CCT CCT CCT CCT CCT TCT TCT
268816 CTG * 7 19/21 CTG TTG CTG TTG CTG CTG CTG
268858 CTG * 8 22/24 CTG CTG CTG CTG CTG CTG TTG TTG
268889 TGC * 7 19/21 TGC TGC TGC TGC TGT TGC TGT
269251 CTG * 10 27/30 CTG CTG CTG CTG ATG TTG CTG CTG CTG TTG
276268 CTG * 11 30/33 CTG CTG CTG TTG CTA CTG CTG CTG CTG CAG CTG
276542 CTC * 8 22/24 CTC CTC CTG CTC CTC CTC CTC CGC
277104 CTG * 11 31/33 CTG CTG CTG CTG CTG CTG CTG CTG CTG ATG ATG
282503 TGC * 11 30/33 TGC TGT TGC TGC TGC TGC TGC TGC TGC TGA TGA
-----------------------------------------------------------------------------------------
Total sequence length......................... 304231
Total number of repeats detected.............. 34
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 5 4 1 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTA 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 0 1 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 7 3 4 0 0 0 0 0 0 0 0 0 0
CTC 2 2 0 0 0 0 0 0 0 0 0 0 0
CCA 2 1 1 0 0 0 0 0 0 0 0 0 0
CCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 1 ACA + 2 CAA + 0 GTT + 0 TTG + 1 TGT = 5
0 ATG + 0 TGA + 1 GAT + 0 CAT + 0 ATC + 1 TCA = 2
0 AGT + 1 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 2 CCT + 2 CTC + 0 TCC = 4
1 AGC + 0 GCA + 1 CAG + 1 GCT + 7 CTG + 5 TGC = 15
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 2 CCA + 0 CAC + 1 GGT + 0 GTG + 0 TGG = 3
0 GGC + 0 GCG + 0 CGG + 1 GCC + 1 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7292198|gb|AE003474.1|AE003474 Drosophila melanogaster genomic scaffold 142000013386045 section 8 of 17, complete sequence
Position Repeat Coverage Repeat
93952 AGC * 7 19/21 AGC AGC AGC ACC AGC AGC AGT
192686 ACA * 8 22/24 ACA ACA ACA ACA ACA ACA GCA GCA
240194 TGC * 7 19/21 TGC TGC TGC TGC GGC TGC TGT
240563 CTC * 7 19/21 CTC CTG CTC CTG CTC CTC CTC
271961 TGT * 10 28/30 TGT TGT TGT TGT TGT TGC TGT TGT TGT TGC
289320 CCA * 7 19/21 CCA CCA GCA CCA CCA CCA TCA
289531 CAG * 10 27/30 CAG CAG CAG CAG CAG CAG CAG CAG CAA CGA
289695 AGC * 11 31/33 AGC AGC AGC AGC AGC AGC AGC AGC AAC AAC AGC
291451 CCT * 7 20/21 CCT CCT CCT CCT CAT CCT CCT
293261 AAC * 7 20/21 AAC AAA AAC AAC AAC AAC AAC
295564 ATG * 7 20/21 ATG ATG ATG ATG ATG ATG ATC
296684 CAG * 8 22/24 CAG CAG CAA CAG CAG CAG CAG CAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 306364
Total number of repeats detected.............. 12
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 1 1 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 1 1 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 1 ACA + 0 CAA + 0 GTT + 0 TTG + 1 TGT = 3
1 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 1 CCT + 1 CTC + 0 TCC = 2
2 AGC + 0 GCA + 2 CAG + 0 GCT + 0 CTG + 1 TGC = 5
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 1 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7292168|gb|AE003473.1|AE003473 Drosophila melanogaster genomic scaffold 142000013386045 section 7 of 17, complete sequence
Position Repeat Coverage Repeat
28566 GAG * 12 33/36 GAG CAG GAG AAG GAG GAG GAG GAG GAG GAG GAG GGG
40652 TGC * 15 41/45 TGC TGC GGC TGC TGC TGC TGC TCC TGC TGT TGC TGC TGC GGC TGC
64757 TGC * 8 22/24 TGC TGC TGT TGC TGT TGC TGC TGC
86606 CAT * 7 19/21 CAT CAC CAT CAT CAT CAC CAT
86690 CAG * 7 19/21 CAG CAT CAC CAG CAG CAG CAG
89089 TGC * 7 19/21 TGC TGC TGC TGC TGC TGA TGA
89110 TGA * 7 19/21 TGA TGA TGA TGA TGA GGA GGA
95471 CAG * 11 30/33 CAG CAG CAG CAG CAA CAG CAA CAG CAG CAG CAC
103357 GCC * 7 19/21 GCC ACC GCC GCC GCC GCC GCT
161912 CAG * 7 19/21 CAG CAG CAG CAG CTG CAG CAT
241821 CTT * 7 19/21 CTT CTT CTT CTT CTC TTT CTT
279485 GAG * 9 26/27 GAG GAG GAG GAG GAG GAG GAG GAG GAC
280990 AAT * 7 20/21 AAT AAT AAT AAT AAT AAT AGT
283664 CTG * 8 22/24 CTG CTG CTG CTG TTG CTG TTG CTG
286617 TGG * 12 33/36 TGG TGG TGT TGG TGG TGG TGG TGT TGG TGA TGG TGG
-----------------------------------------------------------------------------------------
Total sequence length......................... 304106
Total number of repeats detected.............. 15
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 3 2 0 1 0 0 0 0 0 0 0 0 0
GAG 2 1 1 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 3 2 1 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 1
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 1 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 2 GAG + 0 CCT + 0 CTC + 0 TCC = 2
0 AGC + 0 GCA + 3 CAG + 0 GCT + 1 CTG + 3 TGC = 7
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 1 TGG = 1
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7292093|gb|AE003472.1|AE003472 Drosophila melanogaster genomic scaffold 142000013386045 section 6 of 17, complete sequence
Position Repeat Coverage Repeat
54890 TTA * 7 19/21 TTA TTA TTA TTA TTA TTT TTT
59088 CAG * 7 20/21 CAG CAG CAG CAG CGG CAG CAG
64724 AGC * 7 19/21 AGC TGC AGC AGC AGC AAC AGC
79724 TGC * 9 25/27 TGC TGC TGC TGC TGC TGA TGC TGT TGC
86123 AGC * 7 19/21 AGC CCC AGC AGC AGC AGC AGC
92328 TCC * 8 22/24 TCC TCC TCT TCC TCC TCC TCC TGC
98667 GTT * 8 22/24 GTT GTA GTT GTT GTT CTT GTT GTT
98700 GTG * 7 20/21 GTG GTG GTG GTG GTG GTG CTG
126425 CTT * 8 22/24 CTT CTT CGA CTT CTT CTT CTT CTT
138921 GAC * 11 30/33 GAC GAC GAC GAC GAC GAC GAC GAT GAC GAT GAT
141446 GAG * 7 19/21 GAG GAG GAG CAG GAG TAG GAG
161087 CAG * 7 19/21 CAG AAG CAG CAG CAG AAG CAG
211840 CAA * 7 19/21 CAA CAA CAA CGA CAA CAA CTA
212549 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CAA
269519 CAG * 8 22/24 CAG CAG CAA CAG CAC CAG CAG CAG
270733 GCA * 8 23/24 GCA ACA GCA GCA GCA GCA GCA GCA
270860 CAG * 8 22/24 CAG CAG CAG CAG CAA CAT CAG CAG
270916 GCA * 11 31/33 GCA GCA GCA GCA GCA GCA GGA GCA ACA GCA GCA
-----------------------------------------------------------------------------------------
Total sequence length......................... 303191
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 0 1 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 1 1 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 5 5 0 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 1
0 AAC + 0 ACA + 1 CAA + 1 GTT + 0 TTG + 0 TGT = 2
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 1 TCC = 2
2 AGC + 2 GCA + 5 CAG + 0 GCT + 0 CTG + 1 TGC = 10
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 1 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7292041|gb|AE003471.1|AE003471 Drosophila melanogaster genomic scaffold 142000013386045 section 5 of 17, complete sequence
Position Repeat Coverage Repeat
28232 GGA * 8 22/24 GGA GGA ACA GGA GGA GGA GGA GGA
49466 GTT * 7 19/21 GTT GTT GTT GTT GTT TTT GTG
58652 CAG * 7 19/21 CAG CAG CAG CTT CAG CAG CAG
125741 CTC * 9 26/27 CTC CTC CTC CTC CTC CTC CTC CTC CTG
126886 TCC * 7 19/21 TCC CCC TCC TCC TCC CCC TCC
128692 CTG * 11 32/33 CTG CTG CTG CTG CTG CTG CTG CTG CTG CTT CTG
173912 CAT * 11 31/33 CAT CAT CAT CAT CAT CAT CAT CAC CAT CAT CAC
174034 TTG * 7 19/21 TTG TTG TTG TTG ATA TTG TTG
174299 ATC * 8 22/24 ATC ATC ATC ATC ATC ATC ATC AGA
206518 AGG * 12 33/36 AGG AGT AGG AGG AGT AGG AGG AGG AGG AGG AGT AGG
212439 GAT * 8 22/24 GAT GAT GAT GAT GAT GAT GAT GTA
234426 AAC * 7 19/21 AAC AAC AAC AAC AGC AAC AGC
250648 ACT * 7 19/21 ACT ACT ACT ACT ACT ACT TGT
251201 CCA * 7 19/21 CCA CCA CCA CCA CCA CCA CTG
263446 ATC * 7 19/21 ATC ATC ATA ATC ATC ATA ATC
273530 AAT * 7 19/21 AAT AAT AAT AAT AAT AAA AAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 301109
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 2 2 0 0 0 0 0 0 0 0 0 0 0
AGG 1 0 1 0 0 0 0 0 0 0 0 0 0
ACT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 0 1 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 0 1 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 0 CAA + 1 GTT + 1 TTG + 0 TGT = 3
0 ATG + 0 TGA + 1 GAT + 1 CAT + 2 ATC + 0 TCA = 4
0 AGT + 0 GTA + 0 TAG + 1 ACT + 0 CTA + 0 TAC = 1
1 AGG + 1 GGA + 0 GAG + 0 CCT + 1 CTC + 1 TCC = 4
0 AGC + 0 GCA + 1 CAG + 0 GCT + 1 CTG + 0 TGC = 2
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 1 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7292017|gb|AE003470.1|AE003470 Drosophila melanogaster genomic scaffold 142000013386045 section 4 of 17, complete sequence
Position Repeat Coverage Repeat
1191 TAA * 8 22/24 TAA TAA TAA TAA TTT TAA TAA TAA
4584 GAC * 8 22/24 GAC GAC GAC GAC GAC GAC GAT GCC
42399 CAA * 7 19/21 CAA CAA CTA CAA CAA CAA CTA
44982 AAC * 11 32/33 AAC AAC AAC AAC AAC AAC AAT AAC AAC AAC AAC
76629 TGT * 8 22/24 TGT TAT TGT TGT TGT TGT TGT TGC
107698 CTG * 8 22/24 CTG ATG GTG CTG CTG CTG CTG CTG
115621 TGT * 8 22/24 TGT TGC TGT TGC TGT TGT TGT TGT
129132 ATC * 7 19/21 ATC ATC CTC ATC GTC ATC ATC
135540 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CCG CTG
151554 CGC * 7 20/21 CGC CGC CGC CGC CGC CGC CGA
175915 GAT * 7 19/21 GAT GAT GTT GCT GAT GAT GAT
178739 GCT * 7 19/21 GCT GGA GCT GCT GCT GCT GCT
180655 CTG * 8 22/24 CTG CTG CTG CTG CTG TAG CTG CTG
180981 TGC * 7 20/21 TGC TGC TGC GGC TGC TGC TGC
192928 GCA * 7 19/21 GCA GGA GCA GCA GCA ACA GCA
209391 TAA * 7 19/21 TAA TAA TAA TAA TCG TAA TAA
211590 CTG * 7 19/21 CTG CTG CTG GTG GTG CTG CTG
214568 GCT * 9 25/27 GCT GCT GCT GCT GCT GCT GCT TCT TCT
214605 CTT * 10 28/30 CTT GTT CTT CTT CTT CCT CTT CTT CTT CTT
220488 GCA * 7 19/21 GCA GCA GCA GCC GCA GTA GCA
224228 AGC * 7 19/21 AGC AGC AAC AAC AGC AGC AGC
224284 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CAA
235936 CAG * 8 22/24 CAG CAG CAG CGG CAG CAG CAG CAA
238534 TCA * 8 22/24 TCA TCA TCA TCA TCA TCA TCG ACA
245286 TTA * 7 19/21 TTA TTA TTA TTG TTA TTA TAA
246921 TGT * 7 20/21 TGT CGT TGT TGT TGT TGT TGT
-----------------------------------------------------------------------------------------
Total sequence length......................... 302423
Total number of repeats detected.............. 26
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 0 1 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 2 2 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 3 3 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 3 3 0 0 0 0 0 0 0 0 0 0 0
CTT 1 0 1 0 0 0 0 0 0 0 0 0 0
CTG 3 3 0 0 0 0 0 0 0 0 0 0 0
CGC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 2 TAA + 0 ATT + 1 TTA + 0 TAT = 3
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 1
1 AAC + 0 ACA + 1 CAA + 0 GTT + 0 TTG + 3 TGT = 5
0 ATG + 0 TGA + 1 GAT + 0 CAT + 1 ATC + 1 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 2 GCA + 3 CAG + 2 GCT + 3 CTG + 1 TGC = 12
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 1 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7291982|gb|AE003469.1|AE003469 Drosophila melanogaster genomic scaffold 142000013386045 section 3 of 17, complete sequence
Position Repeat Coverage Repeat
5977 GCA * 8 23/24 GCA GCA GCA GCA GCA GCA GCA ACA
26214 CTG * 7 20/21 CTG CTG CTG CTG CTG TTG CTG
33604 TGC * 10 27/30 TGC TGC TGC TGC TGA TGC TGC CGC TGC AGC
34755 GCA * 7 19/21 GCA GCA GCA GCA ACA TCA GCA
34781 AGC * 7 20/21 AGC AGC AGC AGC AGC AGC AAC
36247 CAG * 8 22/24 CAG CAG CAG CAG CAA CAG CAG CAA
41997 CAG * 11 30/33 CAG CAG CAG CAT CAG CAG CAG CAG CAG CAT CTG
66603 TGC * 8 22/24 TGC TGC TGT TGC TGC TGC TGT TGC
75299 AGT * 8 22/24 AGT AGT AGT AGT AGT AGA ATT AGT
75755 CAT * 10 27/30 CAT CAT CAT CAT CAT CCT CAT CCT CAT CGT
106052 ATC * 8 22/24 ATC TTC ATC ATC ATC GTC ATC ATC
122626 GCA * 8 23/24 GCA GCA GCA TCA GCA GCA GCA GCA
128541 TGT * 7 19/21 TGT TGT TGT TGT TGC TGT TGG
129513 TGC * 7 19/21 TGC TGC TGC TGC TGC AGT TGC
129779 GCA * 8 22/24 GCA GCA GCA GCA GCA GCA GCA ACC
179731 CAG * 7 19/21 CAG CAA CTG CAG CAG CAG CAG
197344 ATG * 8 22/24 ATG ATG ATG ATG ATG ATG TTG TTG
209220 AAT * 8 23/24 AAT AAT AAT AAT AAT AAT AAT ACT
240228 CAC * 9 25/27 CAC CAC CAC CAC CAC CAC CAC CAC AAA
240327 GGA * 9 25/27 GGA GGC GGA GGA GGA GGT GGA GGA GGA
252007 TCG * 7 19/21 TCG TCG TCG TCA TCC TCG TCG
259671 CAG * 7 19/21 CAG CAG CAA CAG GAG CAG CAG
259695 CAG * 11 30/33 CAG CAG CAG CAA CAG CAG CAG CAG CAG CAG CTT
259868 GCA * 7 19/21 GCA GCA GCA TCA GCA ACA GCA
259979 GCA * 9 25/27 GCA GCA GCA GCA ACC GCA GCA GCA GCA
296532 ATA * 18 50/54 ATA ATA ACA ATA ATA ATA ACA ATA ATA ATA ATA ATA TTA ATA ATA ATT ATA ATA
-----------------------------------------------------------------------------------------
Total sequence length......................... 301868
Total number of repeats detected.............. 26
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 0 0 0 1 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 3 2 1 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 6 6 0 0 0 0 0 0 0 0 0 0 0
CAT 1 0 1 0 0 0 0 0 0 0 0 0 0
CAG 5 3 2 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 1 TGT = 1
1 ATG + 0 TGA + 0 GAT + 1 CAT + 1 ATC + 0 TCA = 3
1 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 1 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 1
1 AGC + 6 GCA + 5 CAG + 0 GCT + 1 CTG + 3 TGC = 16
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 1 TCG = 1
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7291959|gb|AE003468.1|AE003468 Drosophila melanogaster genomic scaffold 142000013386045 section 2 of 17, complete sequence
Position Repeat Coverage Repeat
49595 TGG * 10 28/30 TGG TGG TGG TGG TGG TGG TGG TGG TAC TGG
69266 ATC * 7 20/21 ATC ATC ATC ATC ATC ATC AGC
152524 CCT * 10 27/30 CCT CCT CCT CCT CCT CCT CCT CCT CTT TTT
162344 ATT * 7 19/21 ATT TTT ATT ATT ACT ATT ATT
198310 AGC * 7 20/21 AGC AAC AGC AGC AGC AGC AGC
198576 GAC * 7 19/21 GAC GAC GAC GAC GAC AAC GTC
230490 AAC * 7 19/21 AAC AAC AAC AAC AAC AAC TGC
233665 ATT * 7 20/21 ATT ATT ATT ATT ATT ATT ATG
248435 TGT * 11 30/33 TGT TGT TGT TGT TGT TGT TGT TGT TGC TGC TGG
255057 CAG * 7 20/21 CAG CAG CAA CAG CAG CAG CAG
257750 AGC * 8 22/24 AGC AGC AGC AGC AGC AAC AAC AGC
258980 GTC * 7 20/21 GTC GTC GTC GTC GTC GTC GGC
275533 TAA * 7 20/21 TAA TAA TAA TAA TAA TAA TAT
290828 TTG * 15 41/45 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG CTG TTC TTG CCG
297675 TGC * 7 20/21 TGC TGC TGC TGC TGC TGC TTC
298624 CTT * 8 22/24 CTT CTG CTT CTG CTT CTT CTT CTT
299047 AAC * 8 23/24 AAC AAC AAC AAC AAA AAC AAC AAC
299557 TTG * 10 28/30 TTG TTG TTG TTG TTG TTG TTG TTG TTT TAG
301655 CAA * 9 25/27 CAA CAA CAA CAA CAA CAA CAC AAA CAA
302304 CCA * 11 30/33 CCA CTA CCA CCA CCA CCA CCA CCA CCA CAA CCT
-----------------------------------------------------------------------------------------
Total sequence length......................... 310120
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 2 2 0 0 0 0 0 0 0 0 0 0 0
ATT 2 2 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 2 0 1 1 0 0 0 0 0 0 0 0 0
TGT 1 0 1 0 0 0 0 0 0 0 0 0 0
TGG 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 0 1 0 0 0 0 0 0 0 0 0 0
CCT 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 2 ATT + 0 TTA + 0 TAT = 3
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 1
2 AAC + 0 ACA + 1 CAA + 0 GTT + 2 TTG + 1 TGT = 6
0 ATG + 0 TGA + 0 GAT + 0 CAT + 1 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 1 CCT + 0 CTC + 0 TCC = 1
2 AGC + 0 GCA + 1 CAG + 0 GCT + 0 CTG + 1 TGC = 4
0 ACG + 0 CGA + 1 GAC + 0 CGT + 1 GTC + 0 TCG = 2
0 ACC + 1 CCA + 0 CAC + 0 GGT + 0 GTG + 1 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7291904|gb|AE003467.1|AE003467 Drosophila melanogaster genomic scaffold 142000013386045 section 1 of 17, complete sequence
Position Repeat Coverage Repeat
46117 TAA * 7 19/21 TAA TAA TAA TAA TAA TCA TAT
98889 TGC * 7 19/21 TGC TGC TGC TGT TGC TGC TGT
98927 CTG * 10 27/30 CTG CTG TTG CTG CTT CTG CTG CTG CTG TTG
159304 CGT * 8 23/24 CGT CGT CGT CAT CGT CGT CGT CGT
256336 GAG * 7 19/21 GAG GAG GAG GAG GAG CAG AAG
267540 CAG * 10 28/30 CAG CAA CAG CAG CAG CAA CAG CAG CAG CAG
-----------------------------------------------------------------------------------------
Total sequence length......................... 298644
Total number of repeats detected.............. 6
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 0 1 0 0 0 0 0 0 0 0 0 0
CTG 1 0 1 0 0 0 0 0 0 0 0 0 0
CGT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 1
0 AGC + 0 GCA + 1 CAG + 0 GCT + 1 CTG + 1 TGC = 3
0 ACG + 0 CGA + 0 GAC + 1 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7316103|gb|AE002602.1|AE002602 Drosophila melanogaster genomic scaffold 142000013386050, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7295475|gb|AE003567.1|AE003567 Drosophila melanogaster genomic scaffold 142000013386050 section 54 of 54, complete sequence
Position Repeat Coverage Repeat
2463 TGC * 7 20/21 TGC TGC TGC TGC TGC TGC TGT
41561 AGA * 7 19/21 AGA ACT AGA AGA AGA AGA AGA
69350 AAC * 7 19/21 AAC AAC AGC AAC AAC AAC AGC
71079 ATA * 7 20/21 ATA ATA ATA ATA ATA ATA ATT
75357 GTT * 8 23/24 GTT GTT GTT GTT GTT GTT GTT GTG
-----------------------------------------------------------------------------------------
Total sequence length......................... 104808
Total number of repeats detected.............. 5
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
AGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 1 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 1
1 AAC + 0 ACA + 0 CAA + 1 GTT + 0 TTG + 0 TGT = 2
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 1 TGC = 1
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295459|gb|AE003566.1|AE003566 Drosophila melanogaster genomic scaffold 142000013386050 section 53 of 54, complete sequence
Position Repeat Coverage Repeat
16502 GAG * 7 19/21 GAG GAG GAA GAG GAG GAG CAG
25302 CAG * 7 19/21 CAG CAG CAG CAG CAC CAG CAC
27726 ATT * 8 22/24 ATT ATT ATT ATT ATT ATT ATT CTC
32026 TAA * 7 19/21 TAA TAA AAA TGA TAA TAA TAA
45258 TGT * 7 19/21 TGT CGT TGT TGT TGT TGT GGT
64991 CAT * 7 20/21 CAT CAT CAT CAT CAT CAT CTT
89149 CAG * 9 25/27 CAG CAA AAG CAG CAG CAG CAG CAG CAG
101781 GCA * 7 19/21 GCA GCG GCA GCA GCA GGA GCA
115025 GCT * 8 22/24 GCT GCT GCT ACT GCT GCT GCT GCC
118448 CAG * 7 19/21 CAG GAG CAG CAG CAG CAG CAA
121296 TAA * 7 19/21 TAA CAA TAA TAA CAA TAA TAA
135660 CAG * 7 19/21 CAG CAG CAG CAA CAG CAG GAG
180629 ATT * 7 20/21 ATT ATT ATT AGT ATT ATT ATT
183452 GCT * 11 31/33 GCT GCT GCT GCT GCT GTT GCT GCT GCT GCT GCA
184356 TGA * 11 30/33 TGA TGA TGA TGA TGA TGA TGA TAA TGT TGA TGG
202219 GTT * 7 20/21 GTT GTT GTT GTT TTT GTT GTT
202759 ATG * 11 30/33 ATG ATG ATG ATG ATG ATG ATG ATG ACG ACG TTG
223594 GCA * 15 41/45 GCA GTG GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCT ACA
229324 TGC * 8 22/24 TGC TGC TGG TGC TGC TGC TGT TGC
243477 AGC * 8 22/24 AGC AGC AGC AGC AGC AGC GGC GGC
243504 AGC * 8 22/24 AGC AGC AAC AGT AGC AGC AGC AGC
243656 CAA * 7 19/21 CAA CAA CAA CAA CAA CAC CAC
243778 AGC * 12 33/36 AGC AGC AGC AGC AGC AGC AGC AGC GAC AGC AGC AAC
243836 GCA * 11 30/33 GCA ACA GCA GCA GCG GCA GCA GCA GCA GCA GTA
243903 CAC * 7 19/21 CAC CAC CAG CAC CAC CAC GAC
254981 GCA * 7 20/21 GCA GCA GCA GCA GCA GCA GCC
-----------------------------------------------------------------------------------------
Total sequence length......................... 286716
Total number of repeats detected.............. 26
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATT 2 2 0 0 0 0 0 0 0 0 0 0 0
ATG 1 0 1 0 0 0 0 0 0 0 0 0 0
AGC 3 2 1 0 0 0 0 0 0 0 0 0 0
TAA 2 2 0 0 0 0 0 0 0 0 0 0 0
TGA 1 0 1 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 4 2 1 1 0 0 0 0 0 0 0 0 0
GCT 2 1 1 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 4 4 0 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 2 TAA + 2 ATT + 0 TTA + 0 TAT = 4
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 1 CAA + 1 GTT + 0 TTG + 1 TGT = 3
1 ATG + 1 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 1
3 AGC + 4 GCA + 4 CAG + 2 GCT + 0 CTG + 1 TGC = 14
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295423|gb|AE003565.1|AE003565 Drosophila melanogaster genomic scaffold 142000013386050 section 52 of 54, complete sequence
Position Repeat Coverage Repeat
10572 TGC * 7 19/21 TGC TGT TGC TGC TGC AGC TGC
13741 GAG * 7 19/21 GAG GAG GAG GAG GAG GCT GAG
43515 CTG * 7 19/21 CTG TTG TTG CTG CTG CTG CTG
58277 TCA * 7 19/21 TCA TCA TCA TCA TCA TGA CCA
70795 TGC * 9 25/27 TGC TGC TGC TGC TGC TGC TGC TTC AGC
71883 TGC * 10 27/30 TGC TGT TGC TGC TGC TGC TGC TGT TGC TGT
74291 TGC * 11 30/33 TGC TGT TGC TGT TGC TGC TGC TGC TGC TGC TGA
76712 GTG * 7 19/21 GTG GTG GTA GTG GTG GTA GTG
79412 TGT * 7 19/21 TGT GGT TGT TGT TGT AGT TGT
90302 CGT * 7 19/21 CGT TGT CGT CGT CAT CGT CGT
90636 GCT * 7 19/21 GCT GCT CCT GCT GCT CCT GCT
90673 CTC * 9 25/27 CTC CAC CTC CTC CTG CTC CTC CTC CTC
93527 CTG * 8 22/24 CTG CTG CTC CTG CTC CTG CTG CTG
104292 ACA * 7 19/21 ACA GCA GCA ACA ACA ACA ACA
105535 GGT * 7 19/21 GGT GGT GGT GGC GGT GTT GGT
110925 CTC * 7 19/21 CTC CTT CTC CTC CTC CTA CTC
117845 CAC * 7 19/21 CAC CGC CAC CTC CAC CAC CAC
131196 GCA * 11 30/33 GCA GCA GCA GCA GCA GCA GCA GCA GCG GTT GCA
138818 GCC * 7 19/21 GCC GCC GCC TCC GCC ACC GCC
143810 ATT * 7 19/21 ATT ATT ATT ATC ATT ATC ATT
164787 TGC * 8 22/24 TGC TGC TGT TGC TGC TGC TGT TGC
164975 CTG * 11 30/33 CTG CTG CTG ATG CTG CTG TTG CTG CTG CTG ATG
166701 CCT * 7 19/21 CCT GAT CCT CCT CCT CCT CCT
167490 CCT * 7 19/21 CCT CCG CCT CTT CCT CCT CCT
173428 CAT * 7 19/21 CAT CAT CAT CAT CAT CAT AAC
175576 AAC * 8 22/24 AAC AAC AAC AAC AAC AAG TAC AAC
180080 CTG * 9 25/27 CTG CTG CTG CGG CTG CTG CTG CTG CTA
187964 CAA * 8 22/24 CAA CAA CAA CAG CAA CAG CAA CAA
198530 TTG * 10 27/30 TTG TAC TTG TTG TTG TTG TTG TTG TTG TCG
241174 TGC * 7 19/21 TGC TGC TGC GGC TGC TGT TGC
241198 TGC * 16 44/48 TGC TGC TGC TGT TGT TGC TGC TGC TGC TGC TGC TGC TGC TGC TGG GGC
245452 CAG * 7 20/21 CAG GAG CAG CAG CAG CAG CAG
263135 TAA * 10 27/30 TAA TAA TAC TAA TAA TAA TAA TAG TAA TAG
273629 ACC * 7 19/21 ACC ACA ACC ACC ACC ACC ACG
285793 TTG * 7 20/21 TTG TTG TTG TTG TTG TTG TGG
-----------------------------------------------------------------------------------------
Total sequence length......................... 286782
Total number of repeats detected.............. 35
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 0 1 0 0 0 0 0 0 0 0 0 0
TTG 2 1 1 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 7 4 2 0 1 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 0 1 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 4 3 1 0 0 0 0 0 0 0 0 0 0
CTC 2 2 0 0 0 0 0 0 0 0 0 0 0
CGT 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 1 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 1 ACA + 1 CAA + 0 GTT + 2 TTG + 1 TGT = 6
0 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 1 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 2 CCT + 2 CTC + 0 TCC = 5
0 AGC + 1 GCA + 1 CAG + 1 GCT + 4 CTG + 7 TGC = 14
0 ACG + 0 CGA + 0 GAC + 1 CGT + 0 GTC + 0 TCG = 1
1 ACC + 0 CCA + 1 CAC + 1 GGT + 1 GTG + 0 TGG = 4
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295378|gb|AE003564.1|AE003564 Drosophila melanogaster genomic scaffold 142000013386050 section 51 of 54, complete sequence
Position Repeat Coverage Repeat
30444 TGT * 7 19/21 TGT TGT TGC TGT TGT CGT TGT
30484 ACA * 7 19/21 ACA ACA GCA GCA ACA ACA ACA
34560 GTG * 7 19/21 GTG GTG GTT GTG GTG GTG GTC
35223 TGC * 11 30/33 TGC TGC TGC TGT TGT TGC TGC TGC TGC TGC TGT
35262 TGC * 7 19/21 TGC TGT TGT TGC TGC TGC TGC
35291 ATG * 8 22/24 ATG ATG GTG ATG ATG ATG ATG GTG
66777 GAC * 7 19/21 GAC GAC GAC GAC GAC GAC AAA
87069 CAG * 10 27/30 CAG CTG CAG CAG CAG CAG CAC CAG CAG CCG
93914 GAC * 7 19/21 GAC GAC GAC GTC GAC GAC GGC
96236 TGC * 7 20/21 TGC TGC TGC TGC TGG TGC TGC
97048 ATG * 8 22/24 ATG GTG ATG ATG ATG ATG GTG ATG
139636 CTT * 8 22/24 CTT CTT CTT CTT CTT CTG CTT CTG
147226 GCA * 8 22/24 GCA GTA GCA GCA CCA GCA GCA GCA
160568 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC TGC TTG
160636 GCT * 8 23/24 GCT GCT GCT GCT GCT GCT GCT GGT
161326 AGC * 10 27/30 AGC AGC AGC AAC ATC AGC AGC AGC AGC AAC
161503 CAG * 9 25/27 CAG CAG CAG CAG CAG CAA CAG CAA CAG
163044 AGC * 7 19/21 AGC AAC AGC AAC AGC AGC AGC
215682 TCT * 7 19/21 TCT TCT TGT CCT TCT TCT TCT
233006 CTG * 7 19/21 CTG CTG CTG CTG CTG TTG GTG
239824 TGT * 7 19/21 TGT TGT TGT TGT CGT TGT TGC
246581 GAT * 13 36/39 GAT GAT AAT GAT AAT GAT GAT GAT GAT GAT GAT GAT GTT
249042 TGC * 13 36/39 TGC TGC TGT TGC TGC TTC TGC TGC TGC TGC TGC TGC TGG
249795 GTC * 13 36/39 GTC GTC GTC GTC GTC GTC GTC GTC GTC GTC GTC GCA ATC
253305 GCC * 7 19/21 GCC AAC GCC GCC GCC GCC GCC
255061 TGC * 10 27/30 TGC TGC TAT TGC TGC TGC TGC TGC TGC TGA
258416 GCT * 7 19/21 GCT GCT GCC GCT GTT GCT GCT
263627 TTG * 8 22/24 TTG TTG TTG CTG TTG TTG TTG TGG
264333 TGG * 10 28/30 TGG TGG TGG TGG TGG TGG TGA TGG TGG TGC
271156 CAT * 8 22/24 CAT CAT CAT CAT CAT CAT CGC CAT
271384 CAG * 7 19/21 CAG CAG CAG CAG GAG CGG CAG
271713 AGC * 10 27/30 AGC AGC AAC AGC AAC AGC AGC AGC AGC AAC
272019 CAG * 15 43/45 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAT CAC
272308 CAG * 7 20/21 CAG CAG CAG CAG CAG CAG CAT
272431 AGC * 8 22/24 AGC AGC AGC AGT AGA AGC AGC AGC
272609 AGC * 11 31/33 AGC AGC AGC AGC AGC AAC AGC AGC AGC AGC AGT
273014 AGC * 8 22/24 AGC AGC GCC AGC AGC AGC AGC AGC
273059 AGC * 8 23/24 AGC ACC AGC AGC AGC AGC AGC AGC
273983 GTT * 7 19/21 GTT TTT GTT GTT GTT GTT TTT
274345 TTG * 8 22/24 TTG TTC TTG CTG TTG TTG TTG TTG
280953 TGC * 7 20/21 TGC TGC TGC TGT TGC TGC TGC
280977 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC TGC CTC
283746 TTG * 7 19/21 TTG TTG TTG TTT TTG TTT TTG
284680 TGC * 7 19/21 TGC AGC TGC TGC TGC TGC TGT
-----------------------------------------------------------------------------------------
Total sequence length......................... 301840
Total number of repeats detected.............. 44
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATG 2 2 0 0 0 0 0 0 0 0 0 0 0
AGC 7 4 3 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 3 3 0 0 0 0 0 0 0 0 0 0 0
TGT 2 2 0 0 0 0 0 0 0 0 0 0 0
TGG 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 9 6 2 1 0 0 0 0 0 0 0 0 0
TCT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 0 0 1 0 0 0 0 0 0 0 0 0
GAC 2 2 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTC 1 0 0 1 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 5 3 1 1 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 1 TCT = 2
0 AAC + 1 ACA + 0 CAA + 1 GTT + 3 TTG + 2 TGT = 7
2 ATG + 0 TGA + 1 GAT + 1 CAT + 0 ATC + 0 TCA = 4
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
7 AGC + 1 GCA + 5 CAG + 2 GCT + 1 CTG + 9 TGC = 25
0 ACG + 0 CGA + 2 GAC + 0 CGT + 1 GTC + 0 TCG = 3
0 ACC + 0 CCA + 0 CAC + 0 GGT + 1 GTG + 1 TGG = 2
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295346|gb|AE003563.1|AE003563 Drosophila melanogaster genomic scaffold 142000013386050 section 50 of 54, complete sequence
Position Repeat Coverage Repeat
33432 TCC * 7 20/21 TCC TTC TCC TCC TCC TCC TCC
35333 CTG * 7 19/21 CTG CTG CTG CTG TTG CGG CTG
70915 CAT * 7 19/21 CAT CAT CAT TAT CAT CAT CGT
85377 TGC * 8 23/24 TGC TGC TGC TGC TGC TGC TGC GGC
90175 CTG * 9 25/27 CTG TTG CTG CTG TTG CTG CTG CTG CTG
97362 GCA * 7 20/21 GCA GCA GCA GCA GCA GCA ACA
101546 ATG * 8 23/24 ATG ATG ATG ATG ATG ATG ATG GTG
102351 CTG * 12 33/36 CTG CTG CTG CTG CTG CTG CTT CTC CTG CTG CTG TTG
103706 GCA * 7 20/21 GCA ACA GCA GCA GCA GCA GCA
107001 TGC * 7 19/21 TGC TGC TGC TGC TGC TGC TCG
107416 CAA * 7 19/21 CAA CAG CAG CAA CAA CAA CAA
108158 CAG * 7 19/21 CAG CAG CAG CAA CAT CAG CAG
108182 CAG * 8 23/24 CAG CAG CAG CAG CAG CAG CAG CAA
114934 AGC * 7 20/21 AGC AGC AGC AGC AAC AGC AGC
118117 TGC * 7 19/21 TGC TGG TGT TGC TGC TGC TGC
122639 CAG * 11 32/33 CAG CAG CAG CAG CAG CAG CAA CAG CAG CAG CAG
128313 TGC * 7 19/21 TGC TGC TGC TGG TGC TGC TGG
138060 CTG * 7 20/21 CTG CTA CTG CTG CTG CTG CTG
-----------------------------------------------------------------------------------------
Total sequence length......................... 277325
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 4 4 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 3 2 1 0 0 0 0 0 0 0 0 0 0
CTG 4 3 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 1 CAA + 0 GTT + 0 TTG + 0 TGT = 1
1 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 1 TCC = 1
1 AGC + 2 GCA + 3 CAG + 0 GCT + 4 CTG + 4 TGC = 14
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295332|gb|AE003562.1|AE003562 Drosophila melanogaster genomic scaffold 142000013386050 section 49 of 54, complete sequence
Position Repeat Coverage Repeat
22595 ACT * 9 25/27 ACT ACT ACT ATT ACA ACT ACT ACT ACT
31676 TCC * 10 27/30 TCC TCC TCC TCC TCC TCC TCC TCC CCA TCG
60147 TGC * 10 27/30 TGC CGC TGC TGC TGC TGC TGC TTC TGC TTC
80823 CAG * 7 19/21 CAG CAG CAA CAA CAG CAG CAG
124585 TGC * 11 30/33 TGC TGC TGC TGC TGC TGC TGC TGC TAC TGC CGG
128186 AGC * 7 20/21 AGC AGC AGC AGC AGC AGC AGT
128263 GCA * 7 19/21 GCA GCA GCA GCG GCA GCA GTA
135696 TGT * 7 19/21 TGT TGT TGT TGT TGT AGT CGT
175865 CAG * 8 22/24 CAG CAA CTG CAG CAG CAG CAG CAG
198577 CAT * 14 39/42 CAT CAT CAT CAT CAT CAT CGC CAT CAT CAT CAA CAT CAT CAT
206829 GTT * 11 30/33 GTT GTT GCT GTT GTT GTT GTT GTT GTT GTT TAT
216457 GCT * 8 22/24 GCT GCT GAT GCT GCT GCT GCC GCT
-----------------------------------------------------------------------------------------
Total sequence length......................... 249584
Total number of repeats detected.............. 12
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 0 2 0 0 0 0 0 0 0 0 0 0
TCC 1 0 1 0 0 0 0 0 0 0 0 0 0
GTT 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 0 0 1 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 1 GTT + 0 TTG + 1 TGT = 2
0 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 1 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 1 TCC = 1
1 AGC + 1 GCA + 2 CAG + 1 GCT + 0 CTG + 2 TGC = 7
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295317|gb|AE003561.1|AE003561 Drosophila melanogaster genomic scaffold 142000013386050 section 48 of 54, complete sequence
Position Repeat Coverage Repeat
20507 CTT * 7 19/21 CTT CTT CTT CTT CTT CAT CCT
52611 TCA * 7 19/21 TCA TCA TCA TCA TCA GCA GCA
55540 CAG * 11 30/33 CAG CAG CAG CAG CAG CAG CAA CAG CAA CAG CAA
55972 TGT * 11 30/33 TGT TAT TGT TGT TGT TGT TGT TGT TAT TAT TGT
68615 GCT * 8 22/24 GCT GCT GCT GCT GCT GCT GTT GCA
71931 GCA * 7 19/21 GCA ACA GCA ACA GCA GCA GCA
76095 GGA * 7 19/21 GGA GGA GGA GGA TGA GGA CGA
88663 TCG * 7 20/21 TCG TCG TCG CCG TCG TCG TCG
89513 TGT * 8 23/24 TGT TGT TGT TGT TGT TGT TGT TGC
95231 TGC * 7 19/21 TGC TGC TGC TGC TGC CGC TGT
95985 CAG * 7 19/21 CAG CAG CAG CAG CAG TGG CAG
111116 AAT * 11 30/33 AAT AAT AAT AAT AAT AAT AAA AAT AAT GAT AAG
111445 GTG * 7 19/21 GTG GTG GTG GGG GTG GTG GTC
118368 GCT * 8 22/24 GCT GCT GCT GCT GCT GCT GTT GCA
120826 GTC * 7 19/21 GTC GTC GTC GTC GTC GTC TGC
125551 CAC * 7 19/21 CAC CAC CGC CAC CGC CAC CAC
131103 GCT * 8 22/24 GCT GCT GCT GCT GCT GCT GGT GGT
131576 TTA * 8 22/24 TTA TTA TTA TTA TTA TTG TTG TTA
131705 TGC * 8 22/24 TGC TGC TGC TGC TGA TGT TGC TGC
131732 TGC * 7 19/21 TGC TGG TGT TGC TGC TGC TGC
131756 TGC * 8 22/24 TGC TGC TGC TGC TGT TGC TGC TGG
132991 ATG * 7 19/21 ATG ATG ATG ATG ATG GTG CTG
149588 TGC * 7 20/21 TGC TGC TAC TGC TGC TGC TGC
157448 CCT * 8 22/24 CCT CCT CCT CCT CCT CCT CCT CGA
163976 CAA * 7 19/21 CAA CAA CAA CAA CAA CAG CAG
171209 TCT * 8 22/24 TCT TCT TCT TCT TCT TCT TCC TCA
172818 CAG * 7 19/21 CAG CAC CAA CAG CAG CAG CAG
173008 AGC * 8 23/24 AGC AAC AGC AGC AGC AGC AGC AGC
173135 GCA * 8 22/24 GCA GCA GCA GAA GAA GCA GCA GCA
173165 GCA * 10 27/30 GCA GCA ACA GCA GCA GCA GCA GCA ACA GTA
173602 GCA * 7 19/21 GCA ACA GCA GCA GCA GCA ACA
173797 GCA * 7 19/21 GCA GCC GCA GCA ACA GCA GCA
174269 CAG * 7 19/21 CAG CAG CAG CAG CAG CAG GCG
174292 GCA * 7 19/21 GCA ACA GCA GCC GCA GCA GCA
174611 CAG * 7 19/21 CAG CAA CAG CAG CAG CAG CAA
174638 CAG * 8 23/24 CAG CAG CAG CAG CAG CAG CAG CAA
183220 GCA * 8 22/24 GCA GCA GCA GCA ACA ACA GCA GCA
183245 CAG * 7 19/21 CAG CAG CAG CAA CAA CAG CAG
184159 ACG * 10 28/30 ACG ACG AAG ACG ACG ACG ACG ACG ACG AGG
184626 CAG * 8 22/24 CAG CAG CAG CAG CAT CAT CAG CAG
185949 ACA * 7 19/21 ACA ACA ACA ACA ACA ACA GCC
185990 ACA * 7 19/21 ACA ACA ACA GCA ACA ACG ACA
186086 CAC * 8 22/24 CAC CAC CAC CAC CAT CAT CAC CAC
186168 ACA * 7 20/21 ACA ACA ACA ACA ACA ACA ATA
191100 CAG * 10 27/30 CAG CAG CAG CAA CAA CAG CAG CAG CAG CAA
191250 CAG * 12 33/36 CAG CAG CAG CAG CAG CAA CAA CAG CAG CAG CAA CAG
191618 GCA * 11 30/33 GCA GCA GCA ACA ACA GCA GCA GCA GCA GCA GCC
191829 CAG * 7 19/21 CAG CTG CAG CAG CAG CAA CAG
192470 ACA * 7 19/21 ACA ACA ACA ACA ACA GCA GCA
192663 CAG * 7 19/21 CAG CAG CAG CAT CAG CAG CAA
237087 CAT * 14 39/42 CAT CAT CAT CAT CAT CAT CAT TAT CAT CAT TAT CAT CAG CAT
240330 AGT * 11 30/33 AGT AGT GGT AGT AGT TGT AGT AGT AGT AGT ACT
-----------------------------------------------------------------------------------------
Total sequence length......................... 274307
Total number of repeats detected.............. 52
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 0 1 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGT 1 0 1 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 4 4 0 0 0 0 0 0 0 0 0 0 0
ACG 1 0 1 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 2 1 1 0 0 0 0 0 0 0 0 0 0
TGC 5 5 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
TCT 1 1 0 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTC 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 8 6 2 0 0 0 0 0 0 0 0 0 0
GCT 3 3 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 0 0 1 0 0 0 0 0 0 0 0 0
CAG 12 9 3 0 0 0 0 0 0 0 0 0 0
CAC 2 2 0 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 1 TCT = 2
0 AAC + 4 ACA + 1 CAA + 0 GTT + 0 TTG + 2 TGT = 7
1 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 1 TCA = 3
1 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 1 GGA + 0 GAG + 1 CCT + 0 CTC + 0 TCC = 2
1 AGC + 8 GCA + 12 CAG + 3 GCT + 0 CTG + 5 TGC = 29
1 ACG + 0 CGA + 0 GAC + 0 CGT + 1 GTC + 1 TCG = 3
0 ACC + 0 CCA + 2 CAC + 0 GGT + 1 GTG + 0 TGG = 3
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295278|gb|AE003560.1|AE003560 Drosophila melanogaster genomic scaffold 142000013386050 section 47 of 54, complete sequence <