Tri-Nucleotide Repeats in Genomic Sequences Tri-Nucleotide Repeats in
Drosophila melanogaster Chromosome-Arm-3L Genomic Scaffolds


Genomic sequence
gi|7316100|gb|AE002584.1|AE002584 Drosophila melanogaster genomic scaffold 142000013386045, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       0 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7292550|gb|AE003483.1|AE003483 Drosophila melanogaster genomic scaffold 142000013386045 section 17 of 17, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     1586  GTG *  7    19/21     GTG GTG GCG GTG GTG GTG GGG
     3478  GGT *  7    19/21     GGT GGA AGT GGT GGT GGT GGT
    31586  CAG *  7    19/21     CAG CAC CAG CAG CAG CGG CAG
    32182  CAT *  8    22/24     CAT CAT CAT CAT CAT CAG AAT CAT
    86743  TGC *  7    19/21     TGC TGC CGC TGC TGC AGC TGC
    88482  GGT *  8    22/24     GGT GGG GGT GGT GGT TGT GGT GGT
   124266  GAC *  8    22/24     GAC GAG GAC GAG GAC GAC GAC GAC
   138449  CAG *  9    25/27     CAG CAG CAG CAG CAG CAG GAG CAA CAG
   159057  AGC *  7    19/21     AGC AGC AGC AGC AGC CAC AGC
   159200  TGC *  7    19/21     TGC TGT TGC TGC TGC TCC TGC
   159494  GCC *  7    19/21     GCC GTT GCC GCC GCC GCC GCC
   167767  ACA *  7    19/21     ACA ACA ACA ACA ACA ACA GAA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       175489 
 Total number of repeats detected..............       12 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      2       2       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    1 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    1 
   0 ATG +    0 TGA +   0 GAT +   1 CAT +   0 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   1 AGC +    0 GCA +   2 CAG +   0 GCT +   0 CTG +    2 TGC      =    5 
   0 ACG +    0 CGA +   1 GAC +   0 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   2 GGT +   1 GTG +    0 TGG      =    3 
   0 GGC +    0 GCG +   0 CGG +   1 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7292521|gb|AE003482.1|AE003482 Drosophila melanogaster genomic scaffold 142000013386045 section 16 of 17, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     2614  CAA *  7    19/21     CAA CAA CAA CAG TAA CAA CAA
     3699  CTG * 12    33/36     CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTT TGG
    12222  TGC *  8    24/24     TGC TGC TGC TGC TGC TGC TGC TGC
    12429  AGC *  9    25/27     AGC AGA AGT AGC AGC AGC AGC AGC AGC
    16701  CCT *  8    22/24     CCT CAT CCT CCT CCT CTT CCT CCT
    42344  GCA *  8    23/24     GCA GCG GCA GCA GCA GCA GCA GCA
    45684  TGC *  8    22/24     TGC TGC CGC TGC TGC TGC TGT TGC
    46181  TGA *  8    22/24     TGA TGA TGA TGA TGA TGA TGC CGA
    46265  AGA *  7    19/21     AGA AGA AGA AGA AGA AGC AGC
    49932  CAT *  7    19/21     CAT CAT CGT CCT CAT CAT CAT
    52289  ACA * 11    30/33     ACA CCA AGA ACA ACA ACA ACA ACA ACA ACA ATA
    78977  GCA *  7    19/21     GCA GAA GCA GTA GCA GCA GCA
    93263  CCT *  8    22/24     CCT CCT CCT CCT CCT CCT CCT TTT
    93603  TCA * 10    27/30     TCA TCT TCA TCG TCA TCA TCA TCA TCA CCA
   101283  GCA *  7    19/21     GCA AGA GCA GCA GCA GCA GCA
   103514  GCA *  8    22/24     GCA GCA GCA GCA GCA GCA ACA TCA
   103748  CAG *  8    22/24     CAG CAG CAG CAG CAG CAG CAA CTG
   105267  AGC * 12    33/36     AGC TGC AGC AGC AGC AGC AGC AGC AGC AGC AAC AGG
   121641  GAT * 10    27/30     GAT GAT TAT AAT GAT GAT GAT GAT GAT GAG
   131610  ACA *  7    19/21     ACA ACA AGA GCA ACA ACA ACA
   138564  GCA *  7    19/21     GCA GCA GCA CCA GCA GCA GCT
   140278  GCA *  7    19/21     GCA ACA GCA ACA GCA GCA GCA
   140303  CAG *  8    22/24     CAG CAG CAT CAG CAG CAG CAG CAT
   142283  GAG * 10    27/30     GAG GAG GAG GAG GAG GAG GAG GAG CAA CAG
   162719  CAG *  7    19/21     CAG CAG CGG CAA CAG CAG CAG
   167415  ACA *  9    25/27     ACA ACT ACA ACA ACA ACA AAA ACA ACA
   176341  GAG *  7    19/21     GAG GAG GAG GAG GAG ACG GAG
   206292  TGC *  8    22/24     TGC TGC TGC TGA TGC TGC TGC GGC
   206448  TGT *  9    25/27     TGT TGT TGT TGC AGT TGT TGT TGT TGT
   231580  AGC *  7    19/21     AGC AGC AGC AGC AGG AGC TGC
   243607  ATT *  7    19/21     ATT ATT ATT ATT ATT ATT CAT
   247889  ACA *  8    22/24     ACA ACA ACA GCA ACA AGA ACA ACA
   291839  TTA *  7    19/21     TTA CTA TTA TTA TTA TTA TTT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       301682 
 Total number of repeats detected..............       33 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      3       2       1       0       0       0       0       0       0       0       0       0       0   
  ACA      4       3       1       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      3       3       0       0       0       0       0       0       0       0       0       0       0   
  TCA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GAT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GAG      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GCA      6       6       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      3       3       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   1 ATT +   1 TTA +    0 TAT      =    2 
   0 AAG +    1 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    1 
   0 AAC +    4 ACA +   1 CAA +   0 GTT +   0 TTG +    1 TGT      =    6 
   0 ATG +    1 TGA +   1 GAT +   1 CAT +   0 ATC +    1 TCA      =    4 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   2 GAG +   2 CCT +   0 CTC +    0 TCC      =    4 
   3 AGC +    6 GCA +   3 CAG +   0 GCT +   1 CTG +    3 TGC      =   16 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7292481|gb|AE003481.1|AE003481 Drosophila melanogaster genomic scaffold 142000013386045 section 15 of 17, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     6837  TTA *  8    22/24     TTA TTT TTA TTA TTA TTA TTT TTA
    34323  CAT * 12    33/36     CAT CAT CAA CAT CAA CAT CAT CAT CAT CAT CAC CAT
    36564  GCA *  8    22/24     GCA GCA GCA ACA GCA GCA GCG GCA
    39297  TAT *  9    25/27     TAT TAT TAT TAT TAT TAT TTA TAT TAT
    53811  AAT *  7    21/21     AAT AAT AAT AAT AAT AAT AAT
    94374  GCA *  8    22/24     GCA GCA GCA ACA TCA GCA GCA GCA
   113566  CCA *  7    19/21     CCA ACA CCA ACA CCA CCA CCA
   125524  AAC *  7    19/21     AAC AAC AGC AAC AAC ATC AAC
   130874  TCC *  8    22/24     TCC TCC TCC TCC TCC TCC ACC GCC
   131321  ACC *  7    19/21     ACC ACC ACC GCC ACC ACC TCC
   153175  TGG *  8    22/24     TGG TGG GGG TGG AGG TGG TGG TGG
   153566  TGA *  7    19/21     TGA TGA TGA TGA TGG TGG TGA
   154483  GTG *  7    19/21     GTG GTT GTA GTG GTG GTG GTG
   158957  GGT *  7    20/21     GGT GGT GGT GGT GGG GGT GGT
   159019  TGG *  7    19/21     TGG CGG TGG TGG TGG AGG TGG
   159242  GGT *  8    23/24     GGT GGT GGT GGT GGT GGG GGT GGT
   159325  TGG *  7    19/21     TGG TGG TGG TGG GGG TGG TGT
   162776  AAT *  7    19/21     AAT AAC AAT AAT AAT AAA AAT
   193977  GTC *  7    19/21     GTC GTC ATC GTC GTC GTC ATC
   196093  TGA *  7    19/21     TGA AGA TGA TGA TGC TGA TGA
   209158  ATC *  7    19/21     ATC ATC ATC GCC ATC ATC ATC
   235885  CTT *  7    19/21     CTT CTT CTT CTT CCT CTT CAT
   251907  GCT *  8    22/24     GCT GCT GCT GCT GCT GCT GCT TTT
   268929  CAG *  9    25/27     CAG CAG CAG CAG CAG CAG CAG CAG ATG
   268968  CAG *  8    22/24     CAG CAG CAG CAG CAG ATG CAG CAG
   269453  CAG *  7    19/21     CAG CAG CAG CAG CAG CAA CAC
   276804  CAC *  7    19/21     CAC CAC CAC CAC CAC CCC CCC
   283557  CAG *  8    23/24     CAG CCG CAG CAG CAG CAG CAG CAG
   283589  GCA * 10    27/30     GCA GCA GCA ACA ACA GCA GCA GCA GCA ACA
   303655  AGC *  7    19/21     AGC AGC AGC AGC AGC AGC TGT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       319765 
 Total number of repeats detected..............       30 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGG      3       3       0       0       0       0       0       0       0       0       0       0       0   
  TCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCA      3       2       1       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CAG      4       4       0       0       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   2 AAT +    0 ATA +   0 TAA +   0 ATT +   1 TTA +    1 TAT      =    4 
   0 AAG +    0 AGA +   0 GAA +   1 CTT +   0 TTC +    0 TCT      =    1 
   1 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    1 
   0 ATG +    2 TGA +   0 GAT +   1 CAT +   1 ATC +    0 TCA      =    4 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    1 TCC      =    1 
   1 AGC +    3 GCA +   4 CAG +   1 GCT +   0 CTG +    0 TGC      =    9 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   1 GTC +    0 TCG      =    1 
   1 ACC +    1 CCA +   1 CAC +   2 GGT +   1 GTG +    3 TGG      =    9 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7292415|gb|AE003480.1|AE003480 Drosophila melanogaster genomic scaffold 142000013386045 section 14 of 17, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    11879  TGC *  9    25/27     TGC TGC TGC TGC TGT TGT TGC TGC TGC
    12361  GCA *  7    19/21     GCA GCA ACA ACA GCA GCA GCA
    18240  GCA *  7    20/21     GCA GCA GCA GCA GCA ACA GCA
    44726  ACA *  7    19/21     ACA ACA ACA ACA ACC ACA ATA
    52715  ATG *  8    22/24     ATG ATG ATC ATA ATG ATG ATG ATG
    94331  AGG *  8    22/24     AGG AGG AGG AGA AGC AGG AGG AGG
    95887  ATA *  7    19/21     ATA ATA ATA ATA ATA ATG AGA
   101471  GCT * 12    34/36     GCT GCT GCT GCT GCT GCT GCT GTT GCT GCT GCT GAT
   104222  CAG * 10    27/30     CAG CAA AAG CAG CAG CAG CAG CAG CAG CAC
   105513  TGA *  7    19/21     TGA TGG TGA TGG TGA TGA TGA
   117141  CAG *  7    20/21     CAG CAG CAG CAG CAG CAG GAG
   143368  ATC *  7    20/21     ATC ATC ATC ATC ATC ATC ATT
   147229  CGC *  8    22/24     CGC CGC CCC CGC CGC CGC CGC CGT
   168262  CTC *  7    19/21     CTC CTG CTC CTC CTC TTC CTC
   169723  ATC *  7    19/21     ATC ATC AAC AGC ATC ATC ATC
   255152  TCC *  7    19/21     TCC TCC TCA TCG TCC TCC TCC
   256266  AAC *  8    22/24     AAC AAG AAC AAC AAT AAC AAC AAC
   257277  CTC *  7    19/21     CTC CTC CTC CTC CTC CTT CCC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       310450 
 Total number of repeats detected..............       18 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  AGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CAG      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CTC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    1 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    1 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    2 
   1 ATG +    1 TGA +   0 GAT +   0 CAT +   2 ATC +    0 TCA      =    4 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   1 AGG +    0 GGA +   0 GAG +   0 CCT +   2 CTC +    1 TCC      =    4 
   0 AGC +    2 GCA +   2 CAG +   1 GCT +   0 CTG +    1 TGC      =    6 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    1 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7292381|gb|AE003479.1|AE003479 Drosophila melanogaster genomic scaffold 142000013386045 section 13 of 17, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    25348  CTG *  7    19/21     CTG ATG CTG CTG CTG GTG CTG
    25416  GCA *  7    19/21     GCA ACT GCA GCA GCA GCA GCA
    25437  ACA *  7    19/21     ACA ACA ACA ACA ACA ACA ATC
    35554  TAG *  8    24/24     TAG TAG TAG TAG TAG TAG TAG TAG
    41012  AGC * 13    36/39     AGC AGC AGC AGC AGC AGC AGC AGC AGC AGA AAG AGC AGC
    47333  CAT *  7    19/21     CAT CAT CAT CAC CAT CAC CAT
    47364  ATC *  8    22/24     ATC ATC ATC ATC ATC ATC ATT AGC
    56582  TGC *  7    19/21     TGC TGA TGC TGC TGC TGT TGC
    56639  TGT *  7    19/21     TGT TGC TGT TGT TGT TGC TGT
    94049  CTG *  7    19/21     CTG CTG CTG CTG CTG CTG CGC
    94327  GCT *  8    22/24     GCT GCA GCT GCT GCT GTT GCT GCT
    94361  CTG *  7    19/21     CTG TTG CTG CTG CTG TTG CTG
    94643  CTG *  7    19/21     CTG CTG CTG CTG CAG CTG TTG
   101330  AAC *  7    19/21     AAC AAC AAA AAG AAC AAC AAC
   113630  GCT * 13    36/39     GCT GCT GTT GCT GCT GCT GCT GCT GCG GCT GCT GCT GCG
   113907  GCT * 10    28/30     GCT GCT GCT GCT GTT GCT GCT GCT GCT GCA
   113945  TGC *  8    24/24     TGC TGC TGC TGC TGC TGC TGC TGC
   114033  GCT *  7    19/21     GCT GGT GGT GCT GCT GCT GCT
   139181  GCA * 14    38/42     GCA GCA GCA AAA GCA GCA GCA GCA GCA GCA GCA GCA ACA TCA
   139224  GCA *  7    19/21     GCA GCA GCA GCA GCA GCA ACT
   139281  AGC *  7    20/21     AGC CGC AGC AGC AGC AGC AGC
   143336  CAG *  7    19/21     CAG CTG CAG CAG CAG CAG CAT
   145543  GCA * 12    33/36     GCA ACA GCA GCA GCA ACA GCA GCA GCA ACA GCA GCA
   147790  CAA *  7    20/21     CAA CAA CAA TAA CAA CAA CAA
   151277  CAG *  8    22/24     CAG CAG CAC CAT CAG CAG CAG CAG
   152798  GCC *  7    19/21     GCC GCC GCT GCC GCC GCC GCA
   168784  ACA *  7    19/21     ACA ACA ACA ACA ACA ACA ATT
   179090  GCA * 11    31/33     GCA GCA GCG GCA GCA GCA GCA GCA GCA TCA GCA
   179317  GCA * 14    38/42     GCA GCA GCA GCA GCA GCA GCA ACT GCA ACA GCA GCA GCA ACA
   180164  TGC *  7    19/21     TGC TGC TGC TGC TGC TGC TTG
   180409  TGC * 10    27/30     TGC TGC TGC CGC TGC TGC TGC TGC TGT TGT
   180454  CTG *  8    22/24     CTG CTG CTG CTT CTG CGG CTG CTG
   181027  GAT *  7    19/21     GAT GAT GAT GAT GAT GAT GGG
   190418  CAG *  7    19/21     CAG CAG CAG CAG CAG CAA CAA
   208079  AAT *  7    19/21     AAT AAA AAA AAT AAT AAT AAT
   257800  CAG * 10    28/30     CAG CAG CAG CAG CAG CAA CAG CAA CAG CAG
   261791  GGT *  8    22/24     GGT GGT AGT GGC GGT GGT GGT GGT
   271882  CAT * 11    30/33     CAT CAT CAT CAT CGT CAT CGT CAT CAT TAT CAT
   279514  TGG *  7    19/21     TGG TGG TGG TGG TGG TGC TGC
   286703  CTG *  8    22/24     CTG CTG CTG TTG CTG CTG CTG ATG
   286981  AGC * 10    27/30     AGC AGC AGC AAC ATC AGC AGC AGC AGC AAC
   290144  CAA *  7    19/21     CAA CAA CAA AAA CAA CAA CAG
   292547  GGT *  7    20/21     GGT GGT GGT GGT AGT GGT GGT
   292580  TGA * 10    27/30     TGA TGA TGA TGA TGG TGA TGA CGA TGA TGT
   297580  CAA *  8    22/24     CAA CAA CAA CAA CAA TAA TAA CAA
   298900  CAG *  7    19/21     CAG CAA CAG CAG CAG GAG CAG
   300739  GCA * 15    41/45     GCA GCA GCA GCA ACA GCA GCA GCA GCA GCA GCA TCA GCA TCA CCA
   300832  GCA *  7    20/21     GCA GCA GCA ACA GCA GCA GCA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       309883 
 Total number of repeats detected..............       48 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      3       1       1       1       0       0       0       0       0       0       0       0       0   
  ACA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      4       3       1       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCA      8       3       2       3       0       0       0       0       0       0       0       0       0   
  GCT      4       2       1       1       0       0       0       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      3       3       0       0       0       0       0       0       0       0       0       0       0   
  CAT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CAG      5       4       1       0       0       0       0       0       0       0       0       0       0   
  CTG      6       6       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    2 ACA +   3 CAA +   0 GTT +   0 TTG +    1 TGT      =    7 
   0 ATG +    1 TGA +   1 GAT +   2 CAT +   1 ATC +    0 TCA      =    5 
   0 AGT +    0 GTA +   1 TAG +   0 ACT +   0 CTA +    0 TAC      =    1 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   3 AGC +    8 GCA +   5 CAG +   4 GCT +   6 CTG +    4 TGC      =   30 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   2 GGT +   0 GTG +    1 TGG      =    3 
   0 GGC +    0 GCG +   0 CGG +   1 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7292360|gb|AE003478.1|AE003478 Drosophila melanogaster genomic scaffold 142000013386045 section 12 of 17, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    12853  TCC *  7    19/21     TCC TCC TCC TCC TCC CCC TCG
    13710  CAA * 11    30/33     CAA CAA CAA CAA CAA CAA CAA CAA CTA TAA GAA
    18099  GCC *  8    22/24     GCC GCC GCC GCC GCC GTT GCC GCC
    19027  AAC *  8    23/24     AAC AAC AAC AAC AAC AAC AAC AAT
    25392  TTG * 12    33/36     TTG CTG TTG TTG GTG TTG TTG TTG TTG ATG TTG TTG
    25605  CAA *  7    19/21     CAA TAA CAA CAA CGA CAA CAA
    25711  CAA *  7    19/21     CAA CAA CAA CAG AAA CAA CAA
    35179  TGC * 18    49/54     TGC TGC AGA TGC TGC TGC TGC TGC TGC TGT TGC TGC TGC TGC TGT TGC TGT TGC
    35490  GTT * 11    30/33     GTT GTT GTT GAT GCT GTT GTT GTT GTT GTT GCT
    36731  TTA * 10    27/30     TTA TGA TTA TTA TTA TTA TAA TTA TTA TTT
    37869  ATT *  7    19/21     ATT ATT ATT ATT ATT ATT GTG
    40218  GCA *  8    22/24     GCA GCC GCA GCA GCA GCA TCA GCA
    40243  CAG *  7    20/21     CAG CAG CAG CAG CAG CAT CAG
    44272  CAT *  7    19/21     CAT CAT CAT CAG CAT CAG CAT
    44602  CAA *  7    19/21     CAA CAG CAA CAG CAA CAA CAA
    59675  GCA *  9    25/27     GCA GCA GCA GCA GCA GCC GCA ACA GCA
    59742  CAG *  7    19/21     CAG CGG CAG CAG CAG CAG CAT
    64401  TGT *  7    19/21     TGT TGT TGT TGT TGT TGT GCT
    71083  GAG *  7    19/21     GAG GAG GAG GAG GAA GAC GAG
    76929  ATA * 14    38/42     ATA ATA ATA ATA ATA ATA ATA ATA ATA ACA ATA ACC ATA ATG
    87521  CAT * 10    27/30     CAT GAT CAT CAT CAT CCT CAT CAT CAT CGT
    89973  GCA *  7    19/21     GCA GCA GCT GCA GCG GCA GCA
   103441  AAT *  8    22/24     AAT AAT AAT AAT TAT AAT AAT TAT
   106850  GTT *  7    20/21     GTT GTT GTT GTT GTT GTT GCT
   131585  TTG *  9    25/27     TTG TTC TTG TTG TTG TTG TTG TTG CTG
   193231  ATT *  7    19/21     ATT ATT ATT TTT ATT TTT ATT
   209571  CAC *  7    19/21     CAC CAC CAT CAC CAC CAC CAT
   275851  AAC *  7    19/21     AAC AAC AAC AAC AAC ACC AGC
   275886  CAG *  7    19/21     CAG CAG CAA CAG CAG CAG CAA
   275985  CCA *  8    22/24     CCA CCA CCA CCT GCA CCA CCA CCA
   277132  GCA *  8    22/24     GCA GCA GCA ACA GCA GCA GCA ACA
   277302  CAG * 15    41/45     CAG CAG CAG CAA CAG CAG CAG CAG CAG CAG CAG CAA CAC CAG CAA
   277475  GCA *  8    22/24     GCA GCA GCA GCA TCA ACA GCA GCA
   277942  CAG *  8    22/24     CAG CAG CAA CAG CAA CAG CAG CAG
   300689  GCA * 10    27/30     GCA GCA GCA ACA GCA GCA GCA ACA GCA ACA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       317218 
 Total number of repeats detected..............       35 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AAC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  ATA      1       0       0       1       0       0       0       0       0       0       0       0       0   
  ATT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TTG      2       1       1       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       0       0       0       1       0       0       0       0       0       0       0       0   
  TCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GCA      6       5       1       0       0       0       0       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      4       3       1       0       0       0       0       0       0       0       0       0       0   
  CAT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CAG      5       4       0       1       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    1 ATA +   0 TAA +   2 ATT +   1 TTA +    0 TAT      =    5 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   2 AAC +    0 ACA +   4 CAA +   2 GTT +   2 TTG +    1 TGT      =   11 
   0 ATG +    0 TGA +   0 GAT +   2 CAT +   0 ATC +    0 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   1 GAG +   0 CCT +   0 CTC +    1 TCC      =    2 
   0 AGC +    6 GCA +   5 CAG +   0 GCT +   0 CTG +    1 TGC      =   12 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    1 CCA +   1 CAC +   0 GGT +   0 GTG +    0 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   1 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7292303|gb|AE003477.1|AE003477 Drosophila melanogaster genomic scaffold 142000013386045 section 11 of 17, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     6137  GCT *  7    19/21     GCT GCT GCC GCT GCT GCT GGT
    21186  CAG * 10    27/30     CAG CCG CCG CAG CAG CAG CAG CAG CAG CCG
    43300  GCA *  7    19/21     GCA GTA GCA GCA GCG GCA GCA
    86602  CAG *  7    20/21     CAG CAG CAG CAG CAA CAG CAG
    86659  CAG *  8    22/24     CAG CAG CAG CAG CAG TTG CAG CAG
    86697  GCA * 10    27/30     GCA GCA GCA GCA ACA ACA GCA GCA GCA CCA
    88673  CAG *  7    19/21     CAG CAG CAG CAT CTG CAG CAG
    88703  CAG *  8    22/24     CAG CAG CAG CAA CAG CAG GAG CAG
   163251  CAG *  7    19/21     CAG CAG CAG CAG CAG CAG ACG
   165743  TCG *  7    19/21     TCG TCC GCG TCG TCG TCG TCG
   166461  CAG *  8    22/24     CAG CAC CAA CAG CAG CAG CAG CAG
   167154  CAG *  8    22/24     CAG CAA CAG CAG CAG CAG CAG CTG
   171860  AAC *  7    20/21     AAC AAC AAC AAC AAC AAC AAA
   210267  GAC *  7    19/21     GAC GAC GAC GAC GAC GAG GAG
   223406  GAG *  7    19/21     GAG GAG GAT GAT GAG GAG GAG
   225024  AAG *  7    21/21     AAG AAG AAG AAG AAG AAG AAG
   302000  CAA *  8    22/24     CAA CAA CAA CAA CAG CAG CAA CAA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       304734 
 Total number of repeats detected..............       17 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      8       7       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   1 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    1 
   1 AAC +    0 ACA +   1 CAA +   0 GTT +   0 TTG +    0 TGT      =    2 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   1 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   0 AGC +    2 GCA +   8 CAG +   1 GCT +   0 CTG +    0 TGC      =   11 
   0 ACG +    0 CGA +   1 GAC +   0 CGT +   0 GTC +    1 TCG      =    2 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7292275|gb|AE003476.1|AE003476 Drosophila melanogaster genomic scaffold 142000013386045 section 10 of 17, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    31602  CTG *  8    22/24     CTG CTG CTG CTG CGG CAG CTG CTG
    32610  CTG * 15    41/45     CTG CTG CTG TTG CTG CTG CTG CTG CTG CTG TTG CTG TTG TTG CTG
    32656  TGC * 10    27/30     TGC TGC TGC TGC TGC TGT TGC TGC TGT AGC
    36896  CTG *  7    19/21     CTG CTG TTG CTG CTG CTG TTG
    36942  TGC *  7    19/21     TGC TGC TGC TGC TGC TGC AGG
    37079  CTG *  7    19/21     CTG CTG CGG CTG CTG CTG CAG
    37205  CTG *  8    22/24     CTG CTG CTG CTG TTG TTG CTG CTG
    37334  CTG *  8    22/24     CTG GTG TTG CTG CTG CTG CTG CTG
    37540  TGT *  7    19/21     TGT TGT TGT TGC TGT TGC TGT
    37692  TGC * 10    27/30     TGC TGC TGC TGC TGT TGC TGT TGC TGC TGT
    39438  TGC *  7    19/21     TGC TGC TGC TGC TGC TGT TGG
    39462  TGC *  8    22/24     TGC TGC TGT TGC TGC TGC GGC TGC
    39540  TGC * 14    39/42     TGC TGC TGG TAC TGC TGC TGC TGC TGC TGT TGC TGC TGC TGC
    46925  ACA *  8    22/24     ACA ACA ACG ACA ACA ACA ACA ACC
    63765  CTG *  7    19/21     CTG CCG CTG CTT CTG CTG CTG
    65694  TTA *  7    19/21     TTA TTA TTA TTA TTA TTA TAT
    66471  CTT *  8    22/24     CTT CTT CTG CTT CTT CTT CTT CTG
    78025  CAA *  7    19/21     CAA CAA CAA CAG CAG CAA CAA
    79691  CAG *  8    22/24     CAG CAG CAG CAG CAG CAG AAG AAG
    81675  GTT *  8    22/24     GTT GAT GTT GTT GTT GAT GTT GTT
    86453  AAT *  9    25/27     AAT AAT AAT AAT AAT AAT AAT AAC AAG
    90827  TGC *  7    19/21     TGC TGC TGC TGC TCT TGC TGC
   102639  TGT *  7    19/21     TGT TGC TGC TGT TGT TGT TGT
   108582  TCA *  8    22/24     TCA ACA TCA TCA TCA TCG TCA TCA
   114237  TGC *  8    22/24     TGC TGC TGC TGT TGT TGC TGC TGC
   114375  GCT *  8    22/24     GCT GTT GCT GTT GCT GCT GCT GCT
   114437  TGC * 18    50/54     TGC TGC TGC TGC TGC TGC TGC TGT TGC TGC TGC TGC TGC TGA TGT TGC TGC TGG
   114497  TGC *  8    22/24     TGC TGC TGC TGT TGC TGT TGC TGC
   116510  GAT *  7    19/21     GAT GAT GAT GAT GTT GAT GAG
   124999  TGT *  7    19/21     TGT TGC TGT TGT TCT TGT TGT
   150030  TTG *  7    19/21     TTG TTG TTG TTA TTG TTA TTG
   155386  AGT *  7    19/21     AGT AGT AGT GGT AGT AGT GGT
   163160  AGC *  7    19/21     AGC AGC AGC AGC AGC AGT AGA
   167299  AGC * 14    38/42     AGC AGC AGC AGC AAC AGC AGC AGC AGC AAC AGC AGC AAC TGC
   167347  AGC *  7    19/21     AGC AGC ATC AGC AGC AGC AAC
   190084  GTC *  7    19/21     GTC GCC GTC GTC ATC GTC GTC
   191331  GCA *  8    22/24     GCA GCA ACA GCA ACA GCA GCA GCA
   209527  ATA * 18    50/54     ATA ATA ACA ATA ATA ATA ACA ATA ATA ATA ATA ATA TTA ATA ATA ATT ATA ATA
   231194  GTG * 10    28/30     GTG GTG GTG CTG GTG GTG GTG GGG GTG GTG
   257624  CGA *  7    19/21     CGA CCA CGA TGA CGA CGA CGA
   278443  AAC *  8    22/24     AAC AAA AAC AAC ACC AAC AAC AAC
   278571  ACA *  7    19/21     ACA GCA ACA ACA ACC ACA ACA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       306945 
 Total number of repeats detected..............       42 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATA      1       0       0       0       1       0       0       0       0       0       0       0       0   
  AGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      3       2       0       1       0       0       0       0       0       0       0       0       0   
  ACA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      3       3       0       0       0       0       0       0       0       0       0       0       0   
  TGC     10       6       2       1       1       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      7       6       0       1       0       0       0       0       0       0       0       0       0   
  CGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    1 ATA +   0 TAA +   0 ATT +   1 TTA +    0 TAT      =    3 
   0 AAG +    0 AGA +   0 GAA +   1 CTT +   0 TTC +    0 TCT      =    1 
   1 AAC +    2 ACA +   1 CAA +   1 GTT +   1 TTG +    3 TGT      =    9 
   0 ATG +    0 TGA +   1 GAT +   0 CAT +   0 ATC +    1 TCA      =    2 
   1 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    1 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   3 AGC +    1 GCA +   1 CAG +   1 GCT +   7 CTG +   10 TGC      =   23 
   0 ACG +    1 CGA +   0 GAC +   0 CGT +   1 GTC +    0 TCG      =    2 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   1 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7292236|gb|AE003475.1|AE003475 Drosophila melanogaster genomic scaffold 142000013386045 section 9 of 17, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    12623  CAG *  7    19/21     CAG CAG CAG TCG CAG CAG CAG
    21934  GGT * 10    28/30     GGT GGT CGT GGT AGT GGT GGT GGT GGT GGT
    34886  TGC *  7    19/21     TGC AGT TGC TGC TGC TGC TGC
    55918  TGC *  7    19/21     TGC TGG TGG TGC TGC TGC TGC
    57156  CTG * 10    27/30     CTG CTG CTG TTG TTG CTG CTG CTG CTG ATG
    69537  TCA *  7    20/21     TCA TCA TCA TCA TCA TCA TCG
   103449  TGT * 11    30/33     TGT TGT TGT TGT TGT TGT TGT TGG TGT GTT TGT
   107428  CCG *  8    22/24     CCG CCT CCT CCG CCG CCG CCG CCG
   109108  CTG *  8    22/24     CTG CTG CTG CTG TTG CTG CTG CAG
   109133  TGC *  8    23/24     TGC TGC TGC TGC TGC TGC TGT TGC
   112865  GTA *  8    22/24     GTA GTA GTA GTA GTA GTA GTC GTG
   113754  GCC *  7    19/21     GCC GCC GCT GCT GCC GCC GCC
   123204  CCT *  8    22/24     CCT CCT CCT ACT CCT CCC CCT CCT
   123228  CCA *  8    22/24     CCA CCA CCA CCA CCA CCA CCT CCT
   125648  CAA *  9    25/27     CAA CTG CAA CAA CAA CAA CAA CAA CAA
   125704  AAC *  7    19/21     AAC AAC AAC AAC AAC AAC ATT
   125839  GCT *  7    20/21     GCT GCT GCT GCT GCT GCT GCA
   140111  AGC *  7    19/21     AGC AAC TGC AGC AGC AGC AGC
   161190  CAA *  7    20/21     CAA CAA CAA CAC CAA CAA CAA
   164940  CTC *  8    22/24     CTC CTC CTT CTC CTC CTC CTG CTC
   183381  ACA *  8    22/24     ACA ACA ACA ACA CCA GCA ACA ACA
   185261  GAT *  8    22/24     GAT GAT GAG GAT GAT GAT GAT GAC
   185963  GAC *  8    23/24     GAC GAC GAA GAC GAC GAC GAC GAC
   193546  CCA * 11    30/33     CCA CCC CCA CCA CCA CCA CCA CCA CCA CCA CGG
   259424  ATA *  7    19/21     ATA ATA ATA ATA ATA ATC GTA
   266349  CCT *  7    19/21     CCT CCT CCT CCT CCT TCT TCT
   268816  CTG *  7    19/21     CTG TTG CTG TTG CTG CTG CTG
   268858  CTG *  8    22/24     CTG CTG CTG CTG CTG CTG TTG TTG
   268889  TGC *  7    19/21     TGC TGC TGC TGC TGT TGC TGT
   269251  CTG * 10    27/30     CTG CTG CTG CTG ATG TTG CTG CTG CTG TTG
   276268  CTG * 11    30/33     CTG CTG CTG TTG CTA CTG CTG CTG CTG CAG CTG
   276542  CTC *  8    22/24     CTC CTC CTG CTC CTC CTC CTC CGC
   277104  CTG * 11    31/33     CTG CTG CTG CTG CTG CTG CTG CTG CTG ATG ATG
   282503  TGC * 11    30/33     TGC TGT TGC TGC TGC TGC TGC TGC TGC TGA TGA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       304231 
 Total number of repeats detected..............       34 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGC      5       4       1       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      7       3       4       0       0       0       0       0       0       0       0       0       0   
  CTC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CCA      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    1 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    1 ACA +   2 CAA +   0 GTT +   0 TTG +    1 TGT      =    5 
   0 ATG +    0 TGA +   1 GAT +   0 CAT +   0 ATC +    1 TCA      =    2 
   0 AGT +    1 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    1 
   0 AGG +    0 GGA +   0 GAG +   2 CCT +   2 CTC +    0 TCC      =    4 
   1 AGC +    0 GCA +   1 CAG +   1 GCT +   7 CTG +    5 TGC      =   15 
   0 ACG +    0 CGA +   1 GAC +   0 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    2 CCA +   0 CAC +   1 GGT +   0 GTG +    0 TGG      =    3 
   0 GGC +    0 GCG +   0 CGG +   1 GCC +   1 CCG +    0 CGC      =    2 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7292198|gb|AE003474.1|AE003474 Drosophila melanogaster genomic scaffold 142000013386045 section 8 of 17, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    93952  AGC *  7    19/21     AGC AGC AGC ACC AGC AGC AGT
   192686  ACA *  8    22/24     ACA ACA ACA ACA ACA ACA GCA GCA
   240194  TGC *  7    19/21     TGC TGC TGC TGC GGC TGC TGT
   240563  CTC *  7    19/21     CTC CTG CTC CTG CTC CTC CTC
   271961  TGT * 10    28/30     TGT TGT TGT TGT TGT TGC TGT TGT TGT TGC
   289320  CCA *  7    19/21     CCA CCA GCA CCA CCA CCA TCA
   289531  CAG * 10    27/30     CAG CAG CAG CAG CAG CAG CAG CAG CAA CGA
   289695  AGC * 11    31/33     AGC AGC AGC AGC AGC AGC AGC AGC AAC AAC AGC
   291451  CCT *  7    20/21     CCT CCT CCT CCT CAT CCT CCT
   293261  AAC *  7    20/21     AAC AAA AAC AAC AAC AAC AAC
   295564  ATG *  7    20/21     ATG ATG ATG ATG ATG ATG ATC
   296684  CAG *  8    22/24     CAG CAG CAA CAG CAG CAG CAG CAA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       306364 
 Total number of repeats detected..............       12 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      2       1       1       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    1 ACA +   0 CAA +   0 GTT +   0 TTG +    1 TGT      =    3 
   1 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   1 CCT +   1 CTC +    0 TCC      =    2 
   2 AGC +    0 GCA +   2 CAG +   0 GCT +   0 CTG +    1 TGC      =    5 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    1 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7292168|gb|AE003473.1|AE003473 Drosophila melanogaster genomic scaffold 142000013386045 section 7 of 17, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    28566  GAG * 12    33/36     GAG CAG GAG AAG GAG GAG GAG GAG GAG GAG GAG GGG
    40652  TGC * 15    41/45     TGC TGC GGC TGC TGC TGC TGC TCC TGC TGT TGC TGC TGC GGC TGC
    64757  TGC *  8    22/24     TGC TGC TGT TGC TGT TGC TGC TGC
    86606  CAT *  7    19/21     CAT CAC CAT CAT CAT CAC CAT
    86690  CAG *  7    19/21     CAG CAT CAC CAG CAG CAG CAG
    89089  TGC *  7    19/21     TGC TGC TGC TGC TGC TGA TGA
    89110  TGA *  7    19/21     TGA TGA TGA TGA TGA GGA GGA
    95471  CAG * 11    30/33     CAG CAG CAG CAG CAA CAG CAA CAG CAG CAG CAC
   103357  GCC *  7    19/21     GCC ACC GCC GCC GCC GCC GCT
   161912  CAG *  7    19/21     CAG CAG CAG CAG CTG CAG CAT
   241821  CTT *  7    19/21     CTT CTT CTT CTT CTC TTT CTT
   279485  GAG *  9    26/27     GAG GAG GAG GAG GAG GAG GAG GAG GAC
   280990  AAT *  7    20/21     AAT AAT AAT AAT AAT AAT AGT
   283664  CTG *  8    22/24     CTG CTG CTG CTG TTG CTG TTG CTG
   286617  TGG * 12    33/36     TGG TGG TGT TGG TGG TGG TGG TGT TGG TGA TGG TGG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       304106 
 Total number of repeats detected..............       15 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGC      3       2       0       1       0       0       0       0       0       0       0       0       0   
  GAG      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      3       2       1       0       0       0       0       0       0       0       0       0       0   
  CTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   1 CTT +   0 TTC +    0 TCT      =    1 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    0 
   0 ATG +    1 TGA +   0 GAT +   1 CAT +   0 ATC +    0 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   2 GAG +   0 CCT +   0 CTC +    0 TCC      =    2 
   0 AGC +    0 GCA +   3 CAG +   0 GCT +   1 CTG +    3 TGC      =    7 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    1 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   1 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7292093|gb|AE003472.1|AE003472 Drosophila melanogaster genomic scaffold 142000013386045 section 6 of 17, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    54890  TTA *  7    19/21     TTA TTA TTA TTA TTA TTT TTT
    59088  CAG *  7    20/21     CAG CAG CAG CAG CGG CAG CAG
    64724  AGC *  7    19/21     AGC TGC AGC AGC AGC AAC AGC
    79724  TGC *  9    25/27     TGC TGC TGC TGC TGC TGA TGC TGT TGC
    86123  AGC *  7    19/21     AGC CCC AGC AGC AGC AGC AGC
    92328  TCC *  8    22/24     TCC TCC TCT TCC TCC TCC TCC TGC
    98667  GTT *  8    22/24     GTT GTA GTT GTT GTT CTT GTT GTT
    98700  GTG *  7    20/21     GTG GTG GTG GTG GTG GTG CTG
   126425  CTT *  8    22/24     CTT CTT CGA CTT CTT CTT CTT CTT
   138921  GAC * 11    30/33     GAC GAC GAC GAC GAC GAC GAC GAT GAC GAT GAT
   141446  GAG *  7    19/21     GAG GAG GAG CAG GAG TAG GAG
   161087  CAG *  7    19/21     CAG AAG CAG CAG CAG AAG CAG
   211840  CAA *  7    19/21     CAA CAA CAA CGA CAA CAA CTA
   212549  CAG *  7    19/21     CAG CAG CAG CAG CAG CAA CAA
   269519  CAG *  8    22/24     CAG CAG CAA CAG CAC CAG CAG CAG
   270733  GCA *  8    23/24     GCA ACA GCA GCA GCA GCA GCA GCA
   270860  CAG *  8    22/24     CAG CAG CAG CAG CAA CAT CAG CAG
   270916  GCA * 11    31/33     GCA GCA GCA GCA GCA GCA GGA GCA ACA GCA GCA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       303191 
 Total number of repeats detected..............       18 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      5       5       0       0       0       0       0       0       0       0       0       0       0   
  CTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   1 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   1 CTT +   0 TTC +    0 TCT      =    1 
   0 AAC +    0 ACA +   1 CAA +   1 GTT +   0 TTG +    0 TGT      =    2 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   1 GAG +   0 CCT +   0 CTC +    1 TCC      =    2 
   2 AGC +    2 GCA +   5 CAG +   0 GCT +   0 CTG +    1 TGC      =   10 
   0 ACG +    0 CGA +   1 GAC +   0 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   1 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7292041|gb|AE003471.1|AE003471 Drosophila melanogaster genomic scaffold 142000013386045 section 5 of 17, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    28232  GGA *  8    22/24     GGA GGA ACA GGA GGA GGA GGA GGA
    49466  GTT *  7    19/21     GTT GTT GTT GTT GTT TTT GTG
    58652  CAG *  7    19/21     CAG CAG CAG CTT CAG CAG CAG
   125741  CTC *  9    26/27     CTC CTC CTC CTC CTC CTC CTC CTC CTG
   126886  TCC *  7    19/21     TCC CCC TCC TCC TCC CCC TCC
   128692  CTG * 11    32/33     CTG CTG CTG CTG CTG CTG CTG CTG CTG CTT CTG
   173912  CAT * 11    31/33     CAT CAT CAT CAT CAT CAT CAT CAC CAT CAT CAC
   174034  TTG *  7    19/21     TTG TTG TTG TTG ATA TTG TTG
   174299  ATC *  8    22/24     ATC ATC ATC ATC ATC ATC ATC AGA
   206518  AGG * 12    33/36     AGG AGT AGG AGG AGT AGG AGG AGG AGG AGG AGT AGG
   212439  GAT *  8    22/24     GAT GAT GAT GAT GAT GAT GAT GTA
   234426  AAC *  7    19/21     AAC AAC AAC AAC AGC AAC AGC
   250648  ACT *  7    19/21     ACT ACT ACT ACT ACT ACT TGT
   251201  CCA *  7    19/21     CCA CCA CCA CCA CCA CCA CTG
   263446  ATC *  7    19/21     ATC ATC ATA ATC ATC ATA ATC
   273530  AAT *  7    19/21     AAT AAT AAT AAT AAT AAA AAA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       301109 
 Total number of repeats detected..............       16 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  AGG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  ACT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    0 ACA +   0 CAA +   1 GTT +   1 TTG +    0 TGT      =    3 
   0 ATG +    0 TGA +   1 GAT +   1 CAT +   2 ATC +    0 TCA      =    4 
   0 AGT +    0 GTA +   0 TAG +   1 ACT +   0 CTA +    0 TAC      =    1 
   1 AGG +    1 GGA +   0 GAG +   0 CCT +   1 CTC +    1 TCC      =    4 
   0 AGC +    0 GCA +   1 CAG +   0 GCT +   1 CTG +    0 TGC      =    2 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    1 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7292017|gb|AE003470.1|AE003470 Drosophila melanogaster genomic scaffold 142000013386045 section 4 of 17, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     1191  TAA *  8    22/24     TAA TAA TAA TAA TTT TAA TAA TAA
     4584  GAC *  8    22/24     GAC GAC GAC GAC GAC GAC GAT GCC
    42399  CAA *  7    19/21     CAA CAA CTA CAA CAA CAA CTA
    44982  AAC * 11    32/33     AAC AAC AAC AAC AAC AAC AAT AAC AAC AAC AAC
    76629  TGT *  8    22/24     TGT TAT TGT TGT TGT TGT TGT TGC
   107698  CTG *  8    22/24     CTG ATG GTG CTG CTG CTG CTG CTG
   115621  TGT *  8    22/24     TGT TGC TGT TGC TGT TGT TGT TGT
   129132  ATC *  7    19/21     ATC ATC CTC ATC GTC ATC ATC
   135540  CAG *  8    22/24     CAG CAG CAG CAG CAG CAG CCG CTG
   151554  CGC *  7    20/21     CGC CGC CGC CGC CGC CGC CGA
   175915  GAT *  7    19/21     GAT GAT GTT GCT GAT GAT GAT
   178739  GCT *  7    19/21     GCT GGA GCT GCT GCT GCT GCT
   180655  CTG *  8    22/24     CTG CTG CTG CTG CTG TAG CTG CTG
   180981  TGC *  7    20/21     TGC TGC TGC GGC TGC TGC TGC
   192928  GCA *  7    19/21     GCA GGA GCA GCA GCA ACA GCA
   209391  TAA *  7    19/21     TAA TAA TAA TAA TCG TAA TAA
   211590  CTG *  7    19/21     CTG CTG CTG GTG GTG CTG CTG
   214568  GCT *  9    25/27     GCT GCT GCT GCT GCT GCT GCT TCT TCT
   214605  CTT * 10    28/30     CTT GTT CTT CTT CTT CCT CTT CTT CTT CTT
   220488  GCA *  7    19/21     GCA GCA GCA GCC GCA GTA GCA
   224228  AGC *  7    19/21     AGC AGC AAC AAC AGC AGC AGC
   224284  CAG *  7    19/21     CAG CAG CAA CAG CAG CAG CAA
   235936  CAG *  8    22/24     CAG CAG CAG CGG CAG CAG CAG CAA
   238534  TCA *  8    22/24     TCA TCA TCA TCA TCA TCA TCG ACA
   245286  TTA *  7    19/21     TTA TTA TTA TTG TTA TTA TAA
   246921  TGT *  7    20/21     TGT CGT TGT TGT TGT TGT TGT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       302423 
 Total number of repeats detected..............       26 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  ATC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      3       3       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      3       3       0       0       0       0       0       0       0       0       0       0       0   
  CTT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CTG      3       3       0       0       0       0       0       0       0       0       0       0       0   
  CGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   2 TAA +   0 ATT +   1 TTA +    0 TAT      =    3 
   0 AAG +    0 AGA +   0 GAA +   1 CTT +   0 TTC +    0 TCT      =    1 
   1 AAC +    0 ACA +   1 CAA +   0 GTT +   0 TTG +    3 TGT      =    5 
   0 ATG +    0 TGA +   1 GAT +   0 CAT +   1 ATC +    1 TCA      =    3 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   1 AGC +    2 GCA +   3 CAG +   2 GCT +   3 CTG +    1 TGC      =   12 
   0 ACG +    0 CGA +   1 GAC +   0 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    1 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7291982|gb|AE003469.1|AE003469 Drosophila melanogaster genomic scaffold 142000013386045 section 3 of 17, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     5977  GCA *  8    23/24     GCA GCA GCA GCA GCA GCA GCA ACA
    26214  CTG *  7    20/21     CTG CTG CTG CTG CTG TTG CTG
    33604  TGC * 10    27/30     TGC TGC TGC TGC TGA TGC TGC CGC TGC AGC
    34755  GCA *  7    19/21     GCA GCA GCA GCA ACA TCA GCA
    34781  AGC *  7    20/21     AGC AGC AGC AGC AGC AGC AAC
    36247  CAG *  8    22/24     CAG CAG CAG CAG CAA CAG CAG CAA
    41997  CAG * 11    30/33     CAG CAG CAG CAT CAG CAG CAG CAG CAG CAT CTG
    66603  TGC *  8    22/24     TGC TGC TGT TGC TGC TGC TGT TGC
    75299  AGT *  8    22/24     AGT AGT AGT AGT AGT AGA ATT AGT
    75755  CAT * 10    27/30     CAT CAT CAT CAT CAT CCT CAT CCT CAT CGT
   106052  ATC *  8    22/24     ATC TTC ATC ATC ATC GTC ATC ATC
   122626  GCA *  8    23/24     GCA GCA GCA TCA GCA GCA GCA GCA
   128541  TGT *  7    19/21     TGT TGT TGT TGT TGC TGT TGG
   129513  TGC *  7    19/21     TGC TGC TGC TGC TGC AGT TGC
   129779  GCA *  8    22/24     GCA GCA GCA GCA GCA GCA GCA ACC
   179731  CAG *  7    19/21     CAG CAA CTG CAG CAG CAG CAG
   197344  ATG *  8    22/24     ATG ATG ATG ATG ATG ATG TTG TTG
   209220  AAT *  8    23/24     AAT AAT AAT AAT AAT AAT AAT ACT
   240228  CAC *  9    25/27     CAC CAC CAC CAC CAC CAC CAC CAC AAA
   240327  GGA *  9    25/27     GGA GGC GGA GGA GGA GGT GGA GGA GGA
   252007  TCG *  7    19/21     TCG TCG TCG TCA TCC TCG TCG
   259671  CAG *  7    19/21     CAG CAG CAA CAG GAG CAG CAG
   259695  CAG * 11    30/33     CAG CAG CAG CAA CAG CAG CAG CAG CAG CAG CTT
   259868  GCA *  7    19/21     GCA GCA GCA TCA GCA ACA GCA
   259979  GCA *  9    25/27     GCA GCA GCA GCA ACC GCA GCA GCA GCA
   296532  ATA * 18    50/54     ATA ATA ACA ATA ATA ATA ACA ATA ATA ATA ATA ATA TTA ATA ATA ATT ATA ATA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       301868 
 Total number of repeats detected..............       26 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATA      1       0       0       0       1       0       0       0       0       0       0       0       0   
  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      3       2       1       0       0       0       0       0       0       0       0       0       0   
  TCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      6       6       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CAG      5       3       2       0       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    1 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    1 TGT      =    1 
   1 ATG +    0 TGA +   0 GAT +   1 CAT +   1 ATC +    0 TCA      =    3 
   1 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    1 
   0 AGG +    1 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   1 AGC +    6 GCA +   5 CAG +   0 GCT +   1 CTG +    3 TGC      =   16 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    1 TCG      =    1 
   0 ACC +    0 CCA +   1 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7291959|gb|AE003468.1|AE003468 Drosophila melanogaster genomic scaffold 142000013386045 section 2 of 17, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    49595  TGG * 10    28/30     TGG TGG TGG TGG TGG TGG TGG TGG TAC TGG
    69266  ATC *  7    20/21     ATC ATC ATC ATC ATC ATC AGC
   152524  CCT * 10    27/30     CCT CCT CCT CCT CCT CCT CCT CCT CTT TTT
   162344  ATT *  7    19/21     ATT TTT ATT ATT ACT ATT ATT
   198310  AGC *  7    20/21     AGC AAC AGC AGC AGC AGC AGC
   198576  GAC *  7    19/21     GAC GAC GAC GAC GAC AAC GTC
   230490  AAC *  7    19/21     AAC AAC AAC AAC AAC AAC TGC
   233665  ATT *  7    20/21     ATT ATT ATT ATT ATT ATT ATG
   248435  TGT * 11    30/33     TGT TGT TGT TGT TGT TGT TGT TGT TGC TGC TGG
   255057  CAG *  7    20/21     CAG CAG CAA CAG CAG CAG CAG
   257750  AGC *  8    22/24     AGC AGC AGC AGC AGC AAC AAC AGC
   258980  GTC *  7    20/21     GTC GTC GTC GTC GTC GTC GGC
   275533  TAA *  7    20/21     TAA TAA TAA TAA TAA TAA TAT
   290828  TTG * 15    41/45     TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG CTG TTC TTG CCG
   297675  TGC *  7    20/21     TGC TGC TGC TGC TGC TGC TTC
   298624  CTT *  8    22/24     CTT CTG CTT CTG CTT CTT CTT CTT
   299047  AAC *  8    23/24     AAC AAC AAC AAC AAA AAC AAC AAC
   299557  TTG * 10    28/30     TTG TTG TTG TTG TTG TTG TTG TTG TTT TAG
   301655  CAA *  9    25/27     CAA CAA CAA CAA CAA CAA CAC AAA CAA
   302304  CCA * 11    30/33     CCA CTA CCA CCA CCA CCA CCA CCA CCA CAA CCT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       310120 
 Total number of repeats detected..............       20 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  ATT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  ATC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      2       0       1       1       0       0       0       0       0       0       0       0       0   
  TGT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CCT      1       0       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   1 TAA +   2 ATT +   0 TTA +    0 TAT      =    3 
   0 AAG +    0 AGA +   0 GAA +   1 CTT +   0 TTC +    0 TCT      =    1 
   2 AAC +    0 ACA +   1 CAA +   0 GTT +   2 TTG +    1 TGT      =    6 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   1 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   1 CCT +   0 CTC +    0 TCC      =    1 
   2 AGC +    0 GCA +   1 CAG +   0 GCT +   0 CTG +    1 TGC      =    4 
   0 ACG +    0 CGA +   1 GAC +   0 CGT +   1 GTC +    0 TCG      =    2 
   0 ACC +    1 CCA +   0 CAC +   0 GGT +   0 GTG +    1 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7291904|gb|AE003467.1|AE003467 Drosophila melanogaster genomic scaffold 142000013386045 section 1 of 17, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    46117  TAA *  7    19/21     TAA TAA TAA TAA TAA TCA TAT
    98889  TGC *  7    19/21     TGC TGC TGC TGT TGC TGC TGT
    98927  CTG * 10    27/30     CTG CTG TTG CTG CTT CTG CTG CTG CTG TTG
   159304  CGT *  8    23/24     CGT CGT CGT CAT CGT CGT CGT CGT
   256336  GAG *  7    19/21     GAG GAG GAG GAG GAG CAG AAG
   267540  CAG * 10    28/30     CAG CAA CAG CAG CAG CAA CAG CAG CAG CAG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       298644 
 Total number of repeats detected..............       6 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CTG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   1 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    0 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   1 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   0 AGC +    0 GCA +   1 CAG +   0 GCT +   1 CTG +    1 TGC      =    3 
   0 ACG +    0 CGA +   0 GAC +   1 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7316103|gb|AE002602.1|AE002602 Drosophila melanogaster genomic scaffold 142000013386050, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       0 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7295475|gb|AE003567.1|AE003567 Drosophila melanogaster genomic scaffold 142000013386050 section 54 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     2463  TGC *  7    20/21     TGC TGC TGC TGC TGC TGC TGT
    41561  AGA *  7    19/21     AGA ACT AGA AGA AGA AGA AGA
    69350  AAC *  7    19/21     AAC AAC AGC AAC AAC AAC AGC
    71079  ATA *  7    20/21     ATA ATA ATA ATA ATA ATA ATT
    75357  GTT *  8    23/24     GTT GTT GTT GTT GTT GTT GTT GTG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       104808 
 Total number of repeats detected..............       5 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    1 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    1 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    1 
   1 AAC +    0 ACA +   0 CAA +   1 GTT +   0 TTG +    0 TGT      =    2 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    0 GCA +   0 CAG +   0 GCT +   0 CTG +    1 TGC      =    1 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7295459|gb|AE003566.1|AE003566 Drosophila melanogaster genomic scaffold 142000013386050 section 53 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    16502  GAG *  7    19/21     GAG GAG GAA GAG GAG GAG CAG
    25302  CAG *  7    19/21     CAG CAG CAG CAG CAC CAG CAC
    27726  ATT *  8    22/24     ATT ATT ATT ATT ATT ATT ATT CTC
    32026  TAA *  7    19/21     TAA TAA AAA TGA TAA TAA TAA
    45258  TGT *  7    19/21     TGT CGT TGT TGT TGT TGT GGT
    64991  CAT *  7    20/21     CAT CAT CAT CAT CAT CAT CTT
    89149  CAG *  9    25/27     CAG CAA AAG CAG CAG CAG CAG CAG CAG
   101781  GCA *  7    19/21     GCA GCG GCA GCA GCA GGA GCA
   115025  GCT *  8    22/24     GCT GCT GCT ACT GCT GCT GCT GCC
   118448  CAG *  7    19/21     CAG GAG CAG CAG CAG CAG CAA
   121296  TAA *  7    19/21     TAA CAA TAA TAA CAA TAA TAA
   135660  CAG *  7    19/21     CAG CAG CAG CAA CAG CAG GAG
   180629  ATT *  7    20/21     ATT ATT ATT AGT ATT ATT ATT
   183452  GCT * 11    31/33     GCT GCT GCT GCT GCT GTT GCT GCT GCT GCT GCA
   184356  TGA * 11    30/33     TGA TGA TGA TGA TGA TGA TGA TAA TGT TGA TGG
   202219  GTT *  7    20/21     GTT GTT GTT GTT TTT GTT GTT
   202759  ATG * 11    30/33     ATG ATG ATG ATG ATG ATG ATG ATG ACG ACG TTG
   223594  GCA * 15    41/45     GCA GTG GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCT ACA
   229324  TGC *  8    22/24     TGC TGC TGG TGC TGC TGC TGT TGC
   243477  AGC *  8    22/24     AGC AGC AGC AGC AGC AGC GGC GGC
   243504  AGC *  8    22/24     AGC AGC AAC AGT AGC AGC AGC AGC
   243656  CAA *  7    19/21     CAA CAA CAA CAA CAA CAC CAC
   243778  AGC * 12    33/36     AGC AGC AGC AGC AGC AGC AGC AGC GAC AGC AGC AAC
   243836  GCA * 11    30/33     GCA ACA GCA GCA GCG GCA GCA GCA GCA GCA GTA
   243903  CAC *  7    19/21     CAC CAC CAG CAC CAC CAC GAC
   254981  GCA *  7    20/21     GCA GCA GCA GCA GCA GCA GCC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       286716 
 Total number of repeats detected..............       26 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  ATG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  AGC      3       2       1       0       0       0       0       0       0       0       0       0       0   
  TAA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      4       2       1       1       0       0       0       0       0       0       0       0       0   
  GCT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      4       4       0       0       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   2 TAA +   2 ATT +   0 TTA +    0 TAT      =    4 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   1 CAA +   1 GTT +   0 TTG +    1 TGT      =    3 
   1 ATG +    1 TGA +   0 GAT +   1 CAT +   0 ATC +    0 TCA      =    3 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   1 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   3 AGC +    4 GCA +   4 CAG +   2 GCT +   0 CTG +    1 TGC      =   14 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   1 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7295423|gb|AE003565.1|AE003565 Drosophila melanogaster genomic scaffold 142000013386050 section 52 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    10572  TGC *  7    19/21     TGC TGT TGC TGC TGC AGC TGC
    13741  GAG *  7    19/21     GAG GAG GAG GAG GAG GCT GAG
    43515  CTG *  7    19/21     CTG TTG TTG CTG CTG CTG CTG
    58277  TCA *  7    19/21     TCA TCA TCA TCA TCA TGA CCA
    70795  TGC *  9    25/27     TGC TGC TGC TGC TGC TGC TGC TTC AGC
    71883  TGC * 10    27/30     TGC TGT TGC TGC TGC TGC TGC TGT TGC TGT
    74291  TGC * 11    30/33     TGC TGT TGC TGT TGC TGC TGC TGC TGC TGC TGA
    76712  GTG *  7    19/21     GTG GTG GTA GTG GTG GTA GTG
    79412  TGT *  7    19/21     TGT GGT TGT TGT TGT AGT TGT
    90302  CGT *  7    19/21     CGT TGT CGT CGT CAT CGT CGT
    90636  GCT *  7    19/21     GCT GCT CCT GCT GCT CCT GCT
    90673  CTC *  9    25/27     CTC CAC CTC CTC CTG CTC CTC CTC CTC
    93527  CTG *  8    22/24     CTG CTG CTC CTG CTC CTG CTG CTG
   104292  ACA *  7    19/21     ACA GCA GCA ACA ACA ACA ACA
   105535  GGT *  7    19/21     GGT GGT GGT GGC GGT GTT GGT
   110925  CTC *  7    19/21     CTC CTT CTC CTC CTC CTA CTC
   117845  CAC *  7    19/21     CAC CGC CAC CTC CAC CAC CAC
   131196  GCA * 11    30/33     GCA GCA GCA GCA GCA GCA GCA GCA GCG GTT GCA
   138818  GCC *  7    19/21     GCC GCC GCC TCC GCC ACC GCC
   143810  ATT *  7    19/21     ATT ATT ATT ATC ATT ATC ATT
   164787  TGC *  8    22/24     TGC TGC TGT TGC TGC TGC TGT TGC
   164975  CTG * 11    30/33     CTG CTG CTG ATG CTG CTG TTG CTG CTG CTG ATG
   166701  CCT *  7    19/21     CCT GAT CCT CCT CCT CCT CCT
   167490  CCT *  7    19/21     CCT CCG CCT CTT CCT CCT CCT
   173428  CAT *  7    19/21     CAT CAT CAT CAT CAT CAT AAC
   175576  AAC *  8    22/24     AAC AAC AAC AAC AAC AAG TAC AAC
   180080  CTG *  9    25/27     CTG CTG CTG CGG CTG CTG CTG CTG CTA
   187964  CAA *  8    22/24     CAA CAA CAA CAG CAA CAG CAA CAA
   198530  TTG * 10    27/30     TTG TAC TTG TTG TTG TTG TTG TTG TTG TCG
   241174  TGC *  7    19/21     TGC TGC TGC GGC TGC TGT TGC
   241198  TGC * 16    44/48     TGC TGC TGC TGT TGT TGC TGC TGC TGC TGC TGC TGC TGC TGC TGG GGC
   245452  CAG *  7    20/21     CAG GAG CAG CAG CAG CAG CAG
   263135  TAA * 10    27/30     TAA TAA TAC TAA TAA TAA TAA TAG TAA TAG
   273629  ACC *  7    19/21     ACC ACA ACC ACC ACC ACC ACG
   285793  TTG *  7    20/21     TTG TTG TTG TTG TTG TTG TGG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       286782 
 Total number of repeats detected..............       35 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TTG      2       1       1       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      7       4       2       0       1       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      4       3       1       0       0       0       0       0       0       0       0       0       0   
  CTC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   1 TAA +   1 ATT +   0 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    1 ACA +   1 CAA +   0 GTT +   2 TTG +    1 TGT      =    6 
   0 ATG +    0 TGA +   0 GAT +   1 CAT +   0 ATC +    1 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   1 GAG +   2 CCT +   2 CTC +    0 TCC      =    5 
   0 AGC +    1 GCA +   1 CAG +   1 GCT +   4 CTG +    7 TGC      =   14 
   0 ACG +    0 CGA +   0 GAC +   1 CGT +   0 GTC +    0 TCG      =    1 
   1 ACC +    0 CCA +   1 CAC +   1 GGT +   1 GTG +    0 TGG      =    4 
   0 GGC +    0 GCG +   0 CGG +   1 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7295378|gb|AE003564.1|AE003564 Drosophila melanogaster genomic scaffold 142000013386050 section 51 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    30444  TGT *  7    19/21     TGT TGT TGC TGT TGT CGT TGT
    30484  ACA *  7    19/21     ACA ACA GCA GCA ACA ACA ACA
    34560  GTG *  7    19/21     GTG GTG GTT GTG GTG GTG GTC
    35223  TGC * 11    30/33     TGC TGC TGC TGT TGT TGC TGC TGC TGC TGC TGT
    35262  TGC *  7    19/21     TGC TGT TGT TGC TGC TGC TGC
    35291  ATG *  8    22/24     ATG ATG GTG ATG ATG ATG ATG GTG
    66777  GAC *  7    19/21     GAC GAC GAC GAC GAC GAC AAA
    87069  CAG * 10    27/30     CAG CTG CAG CAG CAG CAG CAC CAG CAG CCG
    93914  GAC *  7    19/21     GAC GAC GAC GTC GAC GAC GGC
    96236  TGC *  7    20/21     TGC TGC TGC TGC TGG TGC TGC
    97048  ATG *  8    22/24     ATG GTG ATG ATG ATG ATG GTG ATG
   139636  CTT *  8    22/24     CTT CTT CTT CTT CTT CTG CTT CTG
   147226  GCA *  8    22/24     GCA GTA GCA GCA CCA GCA GCA GCA
   160568  TGC *  8    22/24     TGC TGC TGC TGC TGC TGC TGC TTG
   160636  GCT *  8    23/24     GCT GCT GCT GCT GCT GCT GCT GGT
   161326  AGC * 10    27/30     AGC AGC AGC AAC ATC AGC AGC AGC AGC AAC
   161503  CAG *  9    25/27     CAG CAG CAG CAG CAG CAA CAG CAA CAG
   163044  AGC *  7    19/21     AGC AAC AGC AAC AGC AGC AGC
   215682  TCT *  7    19/21     TCT TCT TGT CCT TCT TCT TCT
   233006  CTG *  7    19/21     CTG CTG CTG CTG CTG TTG GTG
   239824  TGT *  7    19/21     TGT TGT TGT TGT CGT TGT TGC
   246581  GAT * 13    36/39     GAT GAT AAT GAT AAT GAT GAT GAT GAT GAT GAT GAT GTT
   249042  TGC * 13    36/39     TGC TGC TGT TGC TGC TTC TGC TGC TGC TGC TGC TGC TGG
   249795  GTC * 13    36/39     GTC GTC GTC GTC GTC GTC GTC GTC GTC GTC GTC GCA ATC
   253305  GCC *  7    19/21     GCC AAC GCC GCC GCC GCC GCC
   255061  TGC * 10    27/30     TGC TGC TAT TGC TGC TGC TGC TGC TGC TGA
   258416  GCT *  7    19/21     GCT GCT GCC GCT GTT GCT GCT
   263627  TTG *  8    22/24     TTG TTG TTG CTG TTG TTG TTG TGG
   264333  TGG * 10    28/30     TGG TGG TGG TGG TGG TGG TGA TGG TGG TGC
   271156  CAT *  8    22/24     CAT CAT CAT CAT CAT CAT CGC CAT
   271384  CAG *  7    19/21     CAG CAG CAG CAG GAG CGG CAG
   271713  AGC * 10    27/30     AGC AGC AAC AGC AAC AGC AGC AGC AGC AAC
   272019  CAG * 15    43/45     CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAT CAC
   272308  CAG *  7    20/21     CAG CAG CAG CAG CAG CAG CAT
   272431  AGC *  8    22/24     AGC AGC AGC AGT AGA AGC AGC AGC
   272609  AGC * 11    31/33     AGC AGC AGC AGC AGC AAC AGC AGC AGC AGC AGT
   273014  AGC *  8    22/24     AGC AGC GCC AGC AGC AGC AGC AGC
   273059  AGC *  8    23/24     AGC ACC AGC AGC AGC AGC AGC AGC
   273983  GTT *  7    19/21     GTT TTT GTT GTT GTT GTT TTT
   274345  TTG *  8    22/24     TTG TTC TTG CTG TTG TTG TTG TTG
   280953  TGC *  7    20/21     TGC TGC TGC TGT TGC TGC TGC
   280977  TGC *  8    22/24     TGC TGC TGC TGC TGC TGC TGC CTC
   283746  TTG *  7    19/21     TTG TTG TTG TTT TTG TTT TTG
   284680  TGC *  7    19/21     TGC AGC TGC TGC TGC TGC TGT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       301840 
 Total number of repeats detected..............       44 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  AGC      7       4       3       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      3       3       0       0       0       0       0       0       0       0       0       0       0   
  TGT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGC      9       6       2       1       0       0       0       0       0       0       0       0       0   
  TCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       0       0       1       0       0       0       0       0       0       0       0       0   
  GAC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTC      1       0       0       1       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      5       3       1       1       0       0       0       0       0       0       0       0       0   
  CTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   1 CTT +   0 TTC +    1 TCT      =    2 
   0 AAC +    1 ACA +   0 CAA +   1 GTT +   3 TTG +    2 TGT      =    7 
   2 ATG +    0 TGA +   1 GAT +   1 CAT +   0 ATC +    0 TCA      =    4 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   7 AGC +    1 GCA +   5 CAG +   2 GCT +   1 CTG +    9 TGC      =   25 
   0 ACG +    0 CGA +   2 GAC +   0 CGT +   1 GTC +    0 TCG      =    3 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   1 GTG +    1 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   1 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7295346|gb|AE003563.1|AE003563 Drosophila melanogaster genomic scaffold 142000013386050 section 50 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    33432  TCC *  7    20/21     TCC TTC TCC TCC TCC TCC TCC
    35333  CTG *  7    19/21     CTG CTG CTG CTG TTG CGG CTG
    70915  CAT *  7    19/21     CAT CAT CAT TAT CAT CAT CGT
    85377  TGC *  8    23/24     TGC TGC TGC TGC TGC TGC TGC GGC
    90175  CTG *  9    25/27     CTG TTG CTG CTG TTG CTG CTG CTG CTG
    97362  GCA *  7    20/21     GCA GCA GCA GCA GCA GCA ACA
   101546  ATG *  8    23/24     ATG ATG ATG ATG ATG ATG ATG GTG
   102351  CTG * 12    33/36     CTG CTG CTG CTG CTG CTG CTT CTC CTG CTG CTG TTG
   103706  GCA *  7    20/21     GCA ACA GCA GCA GCA GCA GCA
   107001  TGC *  7    19/21     TGC TGC TGC TGC TGC TGC TCG
   107416  CAA *  7    19/21     CAA CAG CAG CAA CAA CAA CAA
   108158  CAG *  7    19/21     CAG CAG CAG CAA CAT CAG CAG
   108182  CAG *  8    23/24     CAG CAG CAG CAG CAG CAG CAG CAA
   114934  AGC *  7    20/21     AGC AGC AGC AGC AAC AGC AGC
   118117  TGC *  7    19/21     TGC TGG TGT TGC TGC TGC TGC
   122639  CAG * 11    32/33     CAG CAG CAG CAG CAG CAG CAA CAG CAG CAG CAG
   128313  TGC *  7    19/21     TGC TGC TGC TGG TGC TGC TGG
   138060  CTG *  7    20/21     CTG CTA CTG CTG CTG CTG CTG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       277325 
 Total number of repeats detected..............       18 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      4       4       0       0       0       0       0       0       0       0       0       0       0   
  TCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      3       2       1       0       0       0       0       0       0       0       0       0       0   
  CTG      4       3       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   1 CAA +   0 GTT +   0 TTG +    0 TGT      =    1 
   1 ATG +    0 TGA +   0 GAT +   1 CAT +   0 ATC +    0 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    1 TCC      =    1 
   1 AGC +    2 GCA +   3 CAG +   0 GCT +   4 CTG +    4 TGC      =   14 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7295332|gb|AE003562.1|AE003562 Drosophila melanogaster genomic scaffold 142000013386050 section 49 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    22595  ACT *  9    25/27     ACT ACT ACT ATT ACA ACT ACT ACT ACT
    31676  TCC * 10    27/30     TCC TCC TCC TCC TCC TCC TCC TCC CCA TCG
    60147  TGC * 10    27/30     TGC CGC TGC TGC TGC TGC TGC TTC TGC TTC
    80823  CAG *  7    19/21     CAG CAG CAA CAA CAG CAG CAG
   124585  TGC * 11    30/33     TGC TGC TGC TGC TGC TGC TGC TGC TAC TGC CGG
   128186  AGC *  7    20/21     AGC AGC AGC AGC AGC AGC AGT
   128263  GCA *  7    19/21     GCA GCA GCA GCG GCA GCA GTA
   135696  TGT *  7    19/21     TGT TGT TGT TGT TGT AGT CGT
   175865  CAG *  8    22/24     CAG CAA CTG CAG CAG CAG CAG CAG
   198577  CAT * 14    39/42     CAT CAT CAT CAT CAT CAT CGC CAT CAT CAT CAA CAT CAT CAT
   206829  GTT * 11    30/33     GTT GTT GCT GTT GTT GTT GTT GTT GTT GTT TAT
   216457  GCT *  8    22/24     GCT GCT GAT GCT GCT GCT GCC GCT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       249584 
 Total number of repeats detected..............       12 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       0       2       0       0       0       0       0       0       0       0       0       0   
  TCC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GTT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       0       0       1       0       0       0       0       0       0       0       0       0   
  CAG      2       2       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   1 GTT +   0 TTG +    1 TGT      =    2 
   0 ATG +    0 TGA +   0 GAT +   1 CAT +   0 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   1 ACT +   0 CTA +    0 TAC      =    1 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    1 TCC      =    1 
   1 AGC +    1 GCA +   2 CAG +   1 GCT +   0 CTG +    2 TGC      =    7 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7295317|gb|AE003561.1|AE003561 Drosophila melanogaster genomic scaffold 142000013386050 section 48 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    20507  CTT *  7    19/21     CTT CTT CTT CTT CTT CAT CCT
    52611  TCA *  7    19/21     TCA TCA TCA TCA TCA GCA GCA
    55540  CAG * 11    30/33     CAG CAG CAG CAG CAG CAG CAA CAG CAA CAG CAA
    55972  TGT * 11    30/33     TGT TAT TGT TGT TGT TGT TGT TGT TAT TAT TGT
    68615  GCT *  8    22/24     GCT GCT GCT GCT GCT GCT GTT GCA
    71931  GCA *  7    19/21     GCA ACA GCA ACA GCA GCA GCA
    76095  GGA *  7    19/21     GGA GGA GGA GGA TGA GGA CGA
    88663  TCG *  7    20/21     TCG TCG TCG CCG TCG TCG TCG
    89513  TGT *  8    23/24     TGT TGT TGT TGT TGT TGT TGT TGC
    95231  TGC *  7    19/21     TGC TGC TGC TGC TGC CGC TGT
    95985  CAG *  7    19/21     CAG CAG CAG CAG CAG TGG CAG
   111116  AAT * 11    30/33     AAT AAT AAT AAT AAT AAT AAA AAT AAT GAT AAG
   111445  GTG *  7    19/21     GTG GTG GTG GGG GTG GTG GTC
   118368  GCT *  8    22/24     GCT GCT GCT GCT GCT GCT GTT GCA
   120826  GTC *  7    19/21     GTC GTC GTC GTC GTC GTC TGC
   125551  CAC *  7    19/21     CAC CAC CGC CAC CGC CAC CAC
   131103  GCT *  8    22/24     GCT GCT GCT GCT GCT GCT GGT GGT
   131576  TTA *  8    22/24     TTA TTA TTA TTA TTA TTG TTG TTA
   131705  TGC *  8    22/24     TGC TGC TGC TGC TGA TGT TGC TGC
   131732  TGC *  7    19/21     TGC TGG TGT TGC TGC TGC TGC
   131756  TGC *  8    22/24     TGC TGC TGC TGC TGT TGC TGC TGG
   132991  ATG *  7    19/21     ATG ATG ATG ATG ATG GTG CTG
   149588  TGC *  7    20/21     TGC TGC TAC TGC TGC TGC TGC
   157448  CCT *  8    22/24     CCT CCT CCT CCT CCT CCT CCT CGA
   163976  CAA *  7    19/21     CAA CAA CAA CAA CAA CAG CAG
   171209  TCT *  8    22/24     TCT TCT TCT TCT TCT TCT TCC TCA
   172818  CAG *  7    19/21     CAG CAC CAA CAG CAG CAG CAG
   173008  AGC *  8    23/24     AGC AAC AGC AGC AGC AGC AGC AGC
   173135  GCA *  8    22/24     GCA GCA GCA GAA GAA GCA GCA GCA
   173165  GCA * 10    27/30     GCA GCA ACA GCA GCA GCA GCA GCA ACA GTA
   173602  GCA *  7    19/21     GCA ACA GCA GCA GCA GCA ACA
   173797  GCA *  7    19/21     GCA GCC GCA GCA ACA GCA GCA
   174269  CAG *  7    19/21     CAG CAG CAG CAG CAG CAG GCG
   174292  GCA *  7    19/21     GCA ACA GCA GCC GCA GCA GCA
   174611  CAG *  7    19/21     CAG CAA CAG CAG CAG CAG CAA
   174638  CAG *  8    23/24     CAG CAG CAG CAG CAG CAG CAG CAA
   183220  GCA *  8    22/24     GCA GCA GCA GCA ACA ACA GCA GCA
   183245  CAG *  7    19/21     CAG CAG CAG CAA CAA CAG CAG
   184159  ACG * 10    28/30     ACG ACG AAG ACG ACG ACG ACG ACG ACG AGG
   184626  CAG *  8    22/24     CAG CAG CAG CAG CAT CAT CAG CAG
   185949  ACA *  7    19/21     ACA ACA ACA ACA ACA ACA GCC
   185990  ACA *  7    19/21     ACA ACA ACA GCA ACA ACG ACA
   186086  CAC *  8    22/24     CAC CAC CAC CAC CAT CAT CAC CAC
   186168  ACA *  7    20/21     ACA ACA ACA ACA ACA ACA ATA
   191100  CAG * 10    27/30     CAG CAG CAG CAA CAA CAG CAG CAG CAG CAA
   191250  CAG * 12    33/36     CAG CAG CAG CAG CAG CAA CAA CAG CAG CAG CAA CAG
   191618  GCA * 11    30/33     GCA GCA GCA ACA ACA GCA GCA GCA GCA GCA GCC
   191829  CAG *  7    19/21     CAG CTG CAG CAG CAG CAA CAG
   192470  ACA *  7    19/21     ACA ACA ACA ACA ACA GCA GCA
   192663  CAG *  7    19/21     CAG CAG CAG CAT CAG CAG CAA
   237087  CAT * 14    39/42     CAT CAT CAT CAT CAT CAT CAT TAT CAT CAT TAT CAT CAG CAT
   240330  AGT * 11    30/33     AGT AGT GGT AGT AGT TGT AGT AGT AGT AGT ACT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       274307 
 Total number of repeats detected..............       52 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      4       4       0       0       0       0       0       0       0       0       0       0       0   
  ACG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  TGC      5       5       0       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      8       6       2       0       0       0       0       0       0       0       0       0       0   
  GCT      3       3       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       0       0       1       0       0       0       0       0       0       0       0       0   
  CAG     12       9       3       0       0       0       0       0       0       0       0       0       0   
  CAC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   1 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   1 CTT +   0 TTC +    1 TCT      =    2 
   0 AAC +    4 ACA +   1 CAA +   0 GTT +   0 TTG +    2 TGT      =    7 
   1 ATG +    0 TGA +   0 GAT +   1 CAT +   0 ATC +    1 TCA      =    3 
   1 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    1 
   0 AGG +    1 GGA +   0 GAG +   1 CCT +   0 CTC +    0 TCC      =    2 
   1 AGC +    8 GCA +  12 CAG +   3 GCT +   0 CTG +    5 TGC      =   29 
   1 ACG +    0 CGA +   0 GAC +   0 CGT +   1 GTC +    1 TCG      =    3 
   0 ACC +    0 CCA +   2 CAC +   0 GGT +   1 GTG +    0 TGG      =    3 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7295278|gb|AE003560.1|AE003560 Drosophila melanogaster genomic scaffold 142000013386050 section 47 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    45051  CCA *  7    20/21     CCA TCA CCA CCA CCA CCA CCA
    46848  CAG *  9    25/27     CAG CAG CAG CAG CAG CAG CAG CAT CCG
    47777  GCA *  8    22/24     GCA GCA GGA GCA CCA GCA GCA GCA
    47812  AGC *  8    22/24     AGC ACC ACC AGC AGC AGC AGC AGC
    47847  CAG *  8    24/24     CAG CAG CAG CAG CAG CAG CAG CAG
    71601  GCA * 12    34/36     GCA GCA ACA GCA GCG GCA GCA GCA GCA GCA GCA GCA
    94564  AAT *  8    22/24     AAT AAT ACT AAA AAT AAT AAT AAT
   117964  CTC *  7    19/21     CTC CTC CTC CTC CTT CGC CTC
   195060  AGT *  8    22/24     AGT AGT AGT ATT GGT AGT AGT AGT
   258482  CAG *  8    22/24     CAG CAG CAG CAG CAG CAG CAG AAC
   258598  GCA *  7    19/21     GCA GCA CCA GCA GCA GCA ACA
   258821  CAG *  8    22/24     CAG CAG CAA CAG CAG CAG CAG CAA
   261610  TGC *  7    19/21     TGC AGC TGC TGT TGC TGC TGC
   261646  TGC *  8    22/24     TGC TGC TGT TGA TGC TGC TGC TGC
   261784  TGC *  9    25/27     TGC TGC TGC TGT TGT TGC TGC TGC TGC
   261880  GAG *  8    22/24     GAG GAG GAG GAG GAG GTG GAG GCG
   264722  GCT *  8    22/24     GCT GCT GCT GCC TCT GCT GCT GCT
   279571  ATG *  9    26/27     ATG ATG ATG ATG ATG ATG ACG ATG ATG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       285495 
 Total number of repeats detected..............       18 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      3       3       0       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      3       2       1       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      4       4       0       0       0       0       0       0       0       0       0       0       0   
  CTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    0 
   1 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    1 
   1 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    1 
   0 AGG +    0 GGA +   1 GAG +   0 CCT +   1 CTC +    0 TCC      =    2 
   1 AGC +    3 GCA +   4 CAG +   1 GCT +   0 CTG +    3 TGC      =   12 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    1 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7295229|gb|AE003559.1|AE003559 Drosophila melanogaster genomic scaffold 142000013386050 section 46 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    28753  TGC *  7    19/21     TGC TGC TGT TGC TGT TGC TGC
    28885  TGC *  7    19/21     TGC TGA TGC TGC TGC TGA TGC
    29250  CTG *  7    19/21     CTG CTG CTG GTG CTG TTG CTG
    29287  TGC *  7    20/21     TGC TGT TGC TGC TGC TGC TGC
    65583  ATA *  7    19/21     ATA ATC ATA ATA GTA ATA ATA
    96393  GGA *  7    19/21     GGA GTA GGA GGA GGA GGA GCA
   122446  GGA * 10    27/30     GGA GGA AGC GGA GGA GGA GGA GGA GGA CGA
   130092  GTT *  7    19/21     GTT GTT GTT GTT TTT CTT GTT
   137954  CGG *  8    22/24     CGG CGG CGG CGG TGG TGG CGG CGG
   138711  GCG *  9    25/27     GCG GCG GCG GCG GCG GCG GCT GCG TCG
   156946  CCT *  8    22/24     CCT CCT CCT CCT CCT CCT CCT CTG
   165700  AGC *  7    19/21     AGC AGC AGC AGG AGC AAC AGC
   193809  GCA *  7    20/21     GCA GCA GCA GCA GCA ACA GCA
   193879  CAA *  8    22/24     CAA CAG CAA CAA CAG CAA CAA CAA
   202541  AGC *  7    19/21     AGC AGC AGC AGC AGC AGC CTC
   230893  AAT *  7    19/21     AAT AAT AAT AAT AAC AAC AAT
   259738  CTG *  7    19/21     CTG CTG CTG CTG ATG TTG CTG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       269454 
 Total number of repeats detected..............       17 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGC      3       3       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGA      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    1 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   1 CAA +   1 GTT +   0 TTG +    0 TGT      =    2 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    2 GGA +   0 GAG +   1 CCT +   0 CTC +    0 TCC      =    3 
   2 AGC +    1 GCA +   0 CAG +   0 GCT +   2 CTG +    3 TGC      =    8 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    1 GCG +   1 CGG +   0 GCC +   0 CCG +    0 CGC      =    2 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7295193|gb|AE003558.1|AE003558 Drosophila melanogaster genomic scaffold 142000013386050 section 45 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    10587  TAT *  7    19/21     TAT TAT TAT TAA TAT TAT AAT
    16368  ATG *  9    25/27     ATG ATG ATG ATG ATG ATG ATG ATG GGG
    35059  ACA *  8    22/24     ACA ACA ACA ACA AGA GCA ACA ACA
    98954  TGT *  7    19/21     TGT TTT TGT TGT TGT TGT TGC
   120850  CAA *  7    19/21     CAA CAC CTA CAA CAA CAA CAA
   128584  CTG * 12    33/36     CTG CTG CTG CTG CTG CTG CAG CTT CTG TTG CTG CTG
   128794  CTG * 13    36/39     CTG CTG TTG CTG CTG CTG TTG CTG CTG CTG CTG CTG CTC
   131337  GAT *  8    22/24     GAT GCT GAT AAT GAT GAT GAT GAT
   150265  GTG *  7    19/21     GTG ATG GTG GTC GTG GTG GTG
   156416  ATT *  7    19/21     ATT ATT ATT ATT ATT ATT GCT
   161722  AAC *  7    19/21     AAC AAC AAC TAT AAC AAC AAC
   188899  GGT *  8    23/24     GGT GGT GGT GGT GGC GGT GGT GGT
   206442  GCT *  7    19/21     GCT GCT GCT GCT GCT GCA GTT
   234562  GCT * 10    29/30     GCT GCT GCT GCT GCT GCT GCT GCT GCT GCC
   235446  TCG *  8    22/24     TCG TCG TCG TCG TGG TCG TCG TCT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       273744 
 Total number of repeats detected..............       15 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      2       0       1       1       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   1 ATT +   0 TTA +    1 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    1 ACA +   1 CAA +   0 GTT +   0 TTG +    1 TGT      =    4 
   1 ATG +    0 TGA +   1 GAT +   0 CAT +   0 ATC +    0 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    0 GCA +   0 CAG +   2 GCT +   2 CTG +    0 TGC      =    4 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    1 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   1 GGT +   1 GTG +    0 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7295172|gb|AE003557.1|AE003557 Drosophila melanogaster genomic scaffold 142000013386050 section 44 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     4247  GTA *  9    25/27     GTA GTA GTG GTA GTG GTA GTA GTA GTA
    10734  TGT * 13    36/39     TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGC TGT CGC
    15794  GTC *  8    24/24     GTC GTC GTC GTC GTC GTC GTC GTC
    49403  GAC *  7    19/21     GAC GAC GAC GAC GAC GGC GAG
    83466  CAT *  7    19/21     CAT CAT CAT AAT CAT CAC CAT
    91138  TCA *  7    20/21     TCA TCA TCA TCA TCA TCA TCG
    95701  CAA *  7    19/21     CAA CAA CAA AAA CAA CAA CAT
   101512  CTG *  8    23/24     CTG TTG CTG CTG CTG CTG CTG CTG
   123289  AGG *  7    19/21     AGG AGG AGG AGG AGG CGA AGG
   140227  ACA *  7    19/21     ACA GCA AGA ACA ACA ACA ACA
   151068  CAT *  8    23/24     CAT CAT CAT CAT CAT CAT CGT CAT
   159026  CTG *  7    21/21     CTG CTG CTG CTG CTG CTG CTG
   161088  TGC * 10    27/30     TGC TGC TGC TGC TGC TGC TGC TGT TGT TGT
   161118  TGT *  7    19/21     TGT TGT TGT GGT TGT TGT TGC
   161145  TGG *  7    19/21     TGG TGG TGG TGA TGG TGG TGA
   173422  TGC *  8    22/24     TGC TGC TGC TGC TGC TGC CAC TGC
   179044  AGC * 12    33/36     AGC AGC AAC AGC AGC AGC AGC AAC AGC AGC AGC TGC
   180667  CAA *  9    25/27     CAA CAA CAA CAA TAA TAA CAA CAA CAA
   181493  TGT *  7    20/21     TGT TGT TGT TGT TGT TGT AGT
   181556  TTG * 16    45/48     TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG AGC
   202631  ACA *  9    25/27     ACA ACA ACA ACA ACA ACA ACA ACA TGA
   219806  GCA *  7    19/21     GCA ACA GCA GCA GCA GCA ACA
   220060  CAG *  8    22/24     CAG CAG CAG CAT CAA CAG CAG CAG
   220137  GCA * 10    29/30     GCA GCA GCA GCA GCA GCA GCA ACA GCA GCA
   220234  CAA *  7    19/21     CAA CAA CAA CAA CAA CAG CAG
   220279  CAG *  7    19/21     CAG CAG CAG CAA CAG CAG CAC
   220303  CAG *  8    22/24     CAG CAG CAG CAG CAG CAG CAT CAT
   220743  CAA *  7    19/21     CAA CAA TAA CAG CAA CAA CAA
   224778  GCA *  7    19/21     GCA ACA GCA GCA GCA ACA GCA
   224800  CAG * 11    30/33     CAG CAG CAG CAG CAG CAA CAC CAG CAG CAA CAG
   225259  AAT *  7    19/21     AAT AAT AAT AAC AAT AAC AAT
   225333  CAA * 10    27/30     CAA CAA CAA CAA CAA CAA CAG CAA TAA TAA
   225510  CAA * 15    41/45     CAA CAA CAG CAA CAA CAA CAA CAA CAA CAC CAA CAA CAA TAA TAA
   226842  CAA *  7    20/21     CAA CAA CAG CAA CAA CAA CAA
   229222  CAA *  7    20/21     CAA CAA CAA CAA CAA CAC CAA
   229362  AAC *  7    19/21     AAC AAC AAC AAC AAC AGC AGC
   240454  GCA * 10    28/30     GCA GCA GCA GCA GCA GCA GCA GCA GCA TGA
   259670  CAA * 11    30/33     CAA CAA CAA CAA CAA CAA TAA CCA CAA CAA CAG
   284358  GCA *  7    19/21     GCA GCA ACA GCA GCA GCA TCA
   284383  CAG *  7    19/21     CAG CAG CAG CAA CAT CAG CAG
   285097  CAG *  8    22/24     CAG CAG CAA CAT CAG CAG CAG CAG
   285136  CAG * 10    27/30     CAG CAG CAA CAG CAG CAG CAG CAA CAG CAA
   285169  CAG *  7    19/21     CAG CAG CAG CAA CAA CAG CAG
   285573  GCA * 10    27/30     GCA GCA GCA ACA GCA GCA GCA GCA ACA ACA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       286418 
 Total number of repeats detected..............       44 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  ACA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       0       0       0       1       0       0       0       0       0       0       0       0   
  TGT      3       2       0       1       0       0       0       0       0       0       0       0       0   
  TGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       1       1       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      6       3       3       0       0       0       0       0       0       0       0       0       0   
  CAA      9       6       2       1       0       0       0       0       0       0       0       0       0   
  CAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAG      8       6       2       0       0       0       0       0       0       0       0       0       0   
  CTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    2 ACA +   9 CAA +   0 GTT +   1 TTG +    3 TGT      =   16 
   0 ATG +    0 TGA +   0 GAT +   2 CAT +   0 ATC +    1 TCA      =    3 
   0 AGT +    1 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    1 
   1 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   1 AGC +    6 GCA +   8 CAG +   0 GCT +   2 CTG +    2 TGC      =   19 
   0 ACG +    0 CGA +   1 GAC +   0 CGT +   1 GTC +    0 TCG      =    2 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    1 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7295117|gb|AE003556.1|AE003556 Drosophila melanogaster genomic scaffold 142000013386050 section 43 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     5015  ATT *  7    19/21     ATT ATT ATA ATT ATT ATT TTT
     7727  TGG *  7    19/21     TGG TGG TGC TGG TGG TGC TGG
    11361  CCT *  7    19/21     CCT CCT CGT CCT CCT CCG CCT
    11456  TCC *  7    19/21     TCC TCC TCC TCA TCA TCC TCC
    58018  ATG * 10    27/30     ATG ATG ATG ATG ATG ATG ATG ATT ATA GTG
    61489  GCA *  7    19/21     GCA GCA GTA GCA GCA GCA GGA
    61510  GGA *  8    22/24     GGA GGG GGA GGA GGA GGA GGA GGT
    74396  TGT *  7    19/21     TGT CGT TGT TGC TGT TGT TGT
    77670  ACA *  7    19/21     ACA ACC ACA ACA ACA ACG ACA
    82492  GCT *  8    22/24     GCT GAT GTT GCT GCT GCT GCT GCT
    82867  AGG *  7    19/21     AGG AGC AGG AGA AGG AGG AGG
    83740  GCT *  7    19/21     GCT CCT GCT ACT GCT GCT GCT
    84756  TTG *  7    19/21     TTG TTA TTG TTG TTC TTG TTG
    90092  CTA *  8    22/24     CTA CTA CTA TTA CTA CAA CTA CTA
    91227  ATA *  8    22/24     ATA ATA TTA ATT ATA ATA ATA ATA
    92715  AAT *  7    19/21     AAT AAT ATT AAT AAT AAT ATT
   122081  AGC *  7    19/21     AGC AGC AGC AGC GGC AGC AGG
   172550  CAG *  7    19/21     CAG CAG CAA CAG CAG CAG CAA
   172724  AAC *  7    19/21     AAC AAC AGC AAC AAC AAC AGC
   179965  TGC *  7    19/21     TGC TGC TGC TAC TGC CGC TGC
   182854  CAA *  7    19/21     CAA CAA CAA CAA TAA CAA CCA
   212984  TCC *  7    19/21     TCC TCC TCC TCC TCA TCT TCC
   213545  ATT *  8    22/24     ATT ATA ATT ATT ATA ATT ATT ATT
   231014  GTT *  8    22/24     GTT GTT GTG GTA GTT GTT GTT GTT
   231041  GTG *  8    23/24     GTG GTG GTG GTG GTG GTG GTG GCG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       281146 
 Total number of repeats detected..............       25 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  ATG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  AGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    1 ATA +   0 TAA +   2 ATT +   0 TTA +    0 TAT      =    4 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    1 ACA +   1 CAA +   1 GTT +   1 TTG +    1 TGT      =    6 
   1 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   1 CTA +    0 TAC      =    1 
   1 AGG +    1 GGA +   0 GAG +   1 CCT +   0 CTC +    2 TCC      =    5 
   1 AGC +    1 GCA +   1 CAG +   2 GCT +   0 CTG +    1 TGC      =    6 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   1 GTG +    1 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7295064|gb|AE003555.1|AE003555 Drosophila melanogaster genomic scaffold 142000013386050 section 42 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    32894  CTC *  8    23/24     CTC CTC CTC CTA CTC CTC CTC CTC
    70570  CTT *  7    19/21     CTT CTT CTT CTT CTT CTT CAG
    86964  GCT *  8    23/24     GCT GCT GCT GCT GCT GCT GCA GCT
   100428  GGC *  7    19/21     GGC GGC GGC GGA GGG GGC GGC
   124763  TAT *  7    19/21     TAT TAT TAT TAT TAT TTT TTT
   138122  GAG *  8    22/24     GAG GAA GAG GAG GAG GAG GAG GAT
   148611  TGC *  7    19/21     TGC TGC TGC TGC TGT TGC TGA
   158833  CTC *  8    23/24     CTC CTC CTC CTC CTC CAC CTC CTC
   159070  CAT *  8    23/24     CAT CAT CAT CGT CAT CAT CAT CAT
   162964  TGA *  8    22/24     TGA GGA TGA TGA TGA TGA TGA CGA
   163094  TGT *  7    19/21     TGT TGT TAT TGG TGT TGT TGT
   163858  GAA *  7    20/21     GAA GAA GAA GAA GAA GAA GCA
   164040  AAC *  9    25/27     AAC AAC AAC AAC AAC AAC AAT AAC AAA
   164574  TTG *  7    19/21     TTG TTG TTG TTG CTG TTG CTG
   173685  AAC *  7    19/21     AAC AAC AAC AAA ACC AAC AAC
   177058  CAG *  7    19/21     CAG CAG CAG CAG CAT CAA CAG
   177088  CAG *  8    22/24     CAG CAG CAG CAG CAA CAT CAG CAG
   177147  GCA *  7    19/21     GCA GCA GCA GCA GCA ACA ACA
   177196  CAA *  7    19/21     CAA CAT CAA CAA CAA CAG CAA
   177220  CAG * 10    27/30     CAG CAG CAG CAG CAG CAG CAA CAA CAG CAT
   182512  ACA *  7    19/21     ACA ACA ACA ACA ACA ACA GAA
   185442  CTG *  7    20/21     CTG CTG CTG CTG GTG CTG CTG
   185691  GAG *  7    19/21     GAG GAG GAG GAG GAT GTG GAG
   189723  TTG *  7    19/21     TTG CTG CTG TTG TTG TTG TTG
   189751  TGT *  7    19/21     TGT TCT CGT TGT TGT TGT TGT
   201984  TGC * 10    27/30     TGC TGA TGC TGC TGC TGC TGC TGC TGC TTG
   220457  AAT *  7    20/21     AAT AAT AAT AAT AAT AAT AAC
   228961  CTG * 11    30/33     CTG CTG CTG ATG CTG CTG CTG CTG CTG CTC CTC
   229754  TCA *  7    19/21     TCA TCA TCA TCA TCA TGA ACA
   242660  ATT * 10    28/30     ATT ATT ATT ATT ATT ATC AGT ATT ATT ATT
   243005  GCA *  8    22/24     GCA GCA GCA GCA CCA GCA ACA GCA
   243030  CAG *  7    19/21     CAG CAG CAG CAA CAA CAG CAG
   243187  TGC *  8    23/24     TGC TGC TGC TGC TGC TGC TGC TGT
   245335  AGC * 18    50/54     AGC AGC AGC AAC AGC AGC CGC AGC AGC AGC AGC AGC AGC AGC AAC TGC AGC AGC
   248679  ATG * 10    28/30     ATG ATG ATG ATG ATG ATG ATG ATG ATC ATT
   252589  GCT *  7    20/21     GCT GCT GCT GCT GCT GCT GTT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       281936 
 Total number of repeats detected..............       36 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AAC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  ATT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  ATG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  AGC      1       0       0       0       1       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGC      3       2       1       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      4       3       1       0       0       0       0       0       0       0       0       0       0   
  CTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CTC      2       2       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   1 ATT +   0 TTA +    1 TAT      =    3 
   0 AAG +    0 AGA +   1 GAA +   1 CTT +   0 TTC +    0 TCT      =    2 
   2 AAC +    1 ACA +   1 CAA +   0 GTT +   2 TTG +    2 TGT      =    8 
   1 ATG +    1 TGA +   0 GAT +   1 CAT +   0 ATC +    1 TCA      =    4 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   2 GAG +   0 CCT +   2 CTC +    0 TCC      =    4 
   1 AGC +    2 GCA +   4 CAG +   2 GCT +   2 CTG +    3 TGC      =   14 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   1 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7295028|gb|AE003554.1|AE003554 Drosophila melanogaster genomic scaffold 142000013386050 section 41 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    12824  AAT *  8    22/24     AAT AAT AAT AAT AAT GAT AAT AGT
    22041  TGC *  8    22/24     TGC TGC TGC AGC TGC CGC TGC TGC
    22551  GAT * 10    27/30     GAT GAT GAT GAT GAT GAT TAT GAT GGT GGT
    24254  GCA * 20    55/60     GCA GCA ACA GCA GCA GCA GCA ACA GCA GCA GCA GCA GCA GCT GCA ACA GCA ACA GCA GCA
    60625  TTG *  8    22/24     TTG TTG TTG TTG TTG TTG TTC ATG
    73901  GGT *  7    19/21     GGT GGT GCT GGT GGT GGT GGA
    76313  TGA * 10    28/30     TGA TGA TGA TGA TGA TGA TGA TGG TGA TGG
    80570  CTG *  7    20/21     CTG TTG CTG CTG CTG CTG CTG
   105568  ATT *  7    19/21     ATT ATT ATT ATT ATT ATG ATA
   115038  GGT *  7    19/21     GGT GGT GGT GGT GGC GGC GGT
   125674  ATG *  7    21/21     ATG ATG ATG ATG ATG ATG ATG
   135196  TCT *  7    19/21     TCT GCT TCT TCT TCT GCT TCT
   158903  TCA *  7    19/21     TCA TCA TCA TCA CCA TCT TCA
   164074  ATG *  7    19/21     ATG ATG ATA ATA ATG ATG ATG
   186458  TGA * 12    33/36     TGA CGA TTA TGA TGA TGA TGA TGA TGA TGA TGG TGA
   205865  ATT *  8    22/24     ATT ATT AGT ACT ATT ATT ATT ATT
   224108  TGC * 10    28/30     TGC TGC TGC TGC GGC CGC TGC TGC TGC TGC
   224148  TGC *  8    22/24     TGC TGC TGC TGC TGT TGG TGC TGC
   237871  CAG *  7    19/21     CAG CAG CAG CAG CAG CAG TGG
   249355  TCG *  8    22/24     TCG TCG TCG TCG TCG TCG TCG TTT
   256285  GCA *  8    22/24     GCA GCA GCA ACA GCA GCC GCA GCA
   256381  GCA *  7    20/21     GCA GGA GCA GCA GCA GCA GCA
   258882  GCT *  8    22/24     GCT GCT GCT GTT GCT GCT GGT GCT
   261585  CTG *  8    22/24     CTG CTG TTG CTG CTG CTG TTG CTG
   265147  TTG *  8    22/24     TTG TTT TTG TTG TAG TTG TTG TTG
   276087  GCA *  7    19/21     GCA GCA ACA GCA GCG GCA GCA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       285729 
 Total number of repeats detected..............       26 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  ATG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGA      2       0       2       0       0       0       0       0       0       0       0       0       0   
  TGC      3       2       1       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GGT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCA      4       3       0       0       0       1       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   2 ATT +   0 TTA +    0 TAT      =    3 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    1 TCT      =    1 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   2 TTG +    0 TGT      =    2 
   2 ATG +    2 TGA +   1 GAT +   0 CAT +   0 ATC +    1 TCA      =    6 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    4 GCA +   1 CAG +   1 GCT +   2 CTG +    3 TGC      =   11 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    1 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   2 GGT +   0 GTG +    0 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7294982|gb|AE003553.1|AE003553 Drosophila melanogaster genomic scaffold 142000013386050 section 40 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     1548  CAA *  8    22/24     CAA CCA CAA CAA CAA CAA CAA CCA
     1800  AAC *  7    19/21     AAC AAC AAC AAC AAC AAC AGG
     3030  TGA *  7    19/21     TGA TGA CGA TGA TCA TGA TGA
     9276  GCT *  7    19/21     GCT GCT GCT GCT GCT CCT TCT
     9484  TAA *  7    20/21     TAA TAA TAA TAA TTA TAA TAA
    12481  AGC *  8    22/24     AGC AGC ACA AGC AGC AGC AGC AGC
    12887  CAA *  7    19/21     CAA CCA CAA GAA CAA CAA CAA
    21356  AAC * 10    27/30     AAC TAC AAC AAC AAC AAC AAC TAC AAC TAC
    23595  CAA *  8    23/24     CAA CAA CAA CAA CAA CAA CAA CAT
    24738  CTA *  8    22/24     CTA CTA CTA CTA CTA CAA CAA CTA
    29080  CAA *  7    19/21     CAA CAA CAA CAA CTA CTA CAA
    30627  CAA * 11    30/33     CAA CAA CAA CAA CAA CAA CAA CTA CAA CAA CTG
    30764  ACA * 13    36/39     ACA ACA ACA ACA ACA ACA ACC ACA ACT ACA ACA ACA ACC
    32185  CAA *  8    22/24     CAA CAA CAA CAA CAA CAA CAG CTA
    41185  ACA *  7    19/21     ACA ACA ACA ACA ACA ACA AAT
    64884  AAC *  8    23/24     AAC AAC AAC AAC AAC AAC AAA AAC
    70511  TGC * 10    27/30     TGC TGC TGC TGC TGC TGC TTC TGC TGC TTT
    70708  GAT * 11    30/33     GAT GAT GAT GAT GAT GAT GAA CAT GAT GAT GTT
    75229  TGC *  8    22/24     TGC TGC TGC GGC TGC TGC TGC TGT
    76809  TAC * 10    27/30     TAC CAC TAC TAC TAC TAC TAC TAC TAC CAA
    77685  TAA *  9    25/27     TAA TAA TAA TAA TAA TAA TAA TAA TCC
    81880  CAC *  7    20/21     CAC CAC CAC CAC CAC CAC CAA
    82052  AAC *  8    22/24     AAC TGC AAC AAC AAC AAC AAC AAC
    82109  ACA *  8    22/24     ACA ACA ACA ACA ACT ACA ACA ATA
    82663  CTA *  7    20/21     CTA CTA CTA CTA CTA CTA CCA
    82685  AAC *  8    22/24     AAC AAG AAC AAC AAC AAC AAC AAA
    99639  GGT *  7    19/21     GGT GAC GGT GGT GGT GGT GGT
   119944  ACA *  8    22/24     ACA ACA TCA ACA GCA ACA ACA ACA
   127727  ATG * 11    31/33     ATG ATG ATG GCG ATG ATG ATG ATG ATG ATG ATG
   159602  CGG *  7    19/21     CGG CGG CGG CGG CGG CGT CTG
   160847  GGA *  8    22/24     GGA GGA GGA GGA GGA GGT GGA TGA
   165192  AGG * 10    27/30     AGG AGG AGG AGG AGG ATG AGG AGG CGG TGG
   185213  TAT *  9    26/27     TAT TAT TAT TAT TAT TAT TAT TAT TTT
   196834  CAG *  9    25/27     CAG CAG TCG CAG CAG CAG CAG CAG CAG
   243535  GCA *  8    22/24     GCA GCA GCA GCA GCA GCA ACA ACA
   244140  CCA *  7    21/21     CCA CCA CCA CCA CCA CCA CCA
   262927  ATG * 10    27/30     ATG ATG ATT ATG ATG ATG ATG ACG ATG TTG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       287145 
 Total number of repeats detected..............       37 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      5       4       1       0       0       0       0       0       0       0       0       0       0   
  ATG      2       0       2       0       0       0       0       0       0       0       0       0       0   
  AGG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      4       3       0       1       0       0       0       0       0       0       0       0       0   
  TAA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GAT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      6       5       1       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   2 TAA +   0 ATT +   0 TTA +    1 TAT      =    3 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   5 AAC +    4 ACA +   6 CAA +   0 GTT +   0 TTG +    0 TGT      =   15 
   2 ATG +    1 TGA +   1 GAT +   0 CAT +   0 ATC +    0 TCA      =    4 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   2 CTA +    1 TAC      =    3 
   1 AGG +    1 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    2 
   1 AGC +    1 GCA +   1 CAG +   1 GCT +   0 CTG +    2 TGC      =    6 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    1 CCA +   1 CAC +   1 GGT +   0 GTG +    0 TGG      =    3 
   0 GGC +    0 GCG +   1 CGG +   0 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7294927|gb|AE003552.1|AE003552 Drosophila melanogaster genomic scaffold 142000013386050 section 39 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     3816  TGC *  8    22/24     TGC TGT TGT TGC TGC TGC TGC TGC
     5508  TGT *  7    19/21     TGT TGT TGT TGC TGT TGT TGC
     5706  GCT *  7    19/21     GCT GCT GAT GCG GCT GCT GCT
     5863  TGT *  7    19/21     TGT TGT TGG TGA TGT TGT TGT
     6560  GAT *  9    25/27     GAT GGT GAT GAC GAT GAT GAT GAT GAT
    13414  TGT *  7    19/21     TGT TGT TGT TGC TGC TGT TGT
    14071  TTA *  7    19/21     TTA TTA TTA TTA TTA TTA CTT
    22273  GGA *  8    22/24     GGA GGA TGA GGA CGA GGA GGA GGA
    35223  GCC *  8    22/24     GCC GCC AGC GCC GCC GCC GCC GCC
    35249  CAA *  7    19/21     CAA CAA CAA TAA CAA CAG CAA
    35865  CAG *  8    23/24     CAG CAG CAG CAG CAA CAG CAG CAG
    39731  GTT *  8    22/24     GTT GTT GTC GTT GTT GTT GTT GTG
    46475  TGT *  8    22/24     TGT TGT TGT TGT TGC TGG TGT TGT
    59894  GGT *  7    20/21     GGT GGT GGT GGT GGT GGT GGC
    60411  CAG *  9    25/27     CAG CAG CAG CAG CAG CAG TAT CAG CAG
    60720  CAG *  7    20/21     CAG CAG CAG CAG CAG CAT CAG
    63562  TGC *  8    22/24     TGC TGC TGC TGC TGC TGT TGA TGC
    67948  GCA *  7    19/21     GCA GCA GCG CCA GCA GCA GCA
    70474  CAA *  8    23/24     CAA CAA CAA CAA CAA CAA CAA AAA
    89137  CAG *  7    19/21     CAG CAG CAG CAA GAG CAG CAG
    95435  TGT *  8    22/24     TGT TGT TGG TGT TGT TGT TGT TTT
    97299  GCT *  7    19/21     GCT GCT GCT GCC GCT GCT GTT
   147997  GTT * 12    34/36     GTT GTT GTT GTT GTT GTT CTT GTT GTT GCT GTT GTT
   164168  GCA *  8    22/24     GCA GCA GCA GCA GCA GCA ACA TCA
   184441  AGT *  8    23/24     AGT AGT AGT AGT AGT AGT TGT AGT
   198521  AGC *  7    19/21     AGC AGC AAC AAC AGC AGC AGC
   198577  CAG *  7    19/21     CAG CAG CAA CAG CAG CAG CAA
   218312  GAG *  7    19/21     GAG CAG GAG GAG GAG GAT GAG
   219701  GCA *  9    25/27     GCA GCA GCA GCA GCA GCA ACA GCA ACA
   225405  AAC *  7    19/21     AAC AAC AAC AGC AAC AAT AAC
   234038  GAT *  9    25/27     GAT GAT GAT GAT GAT GAT GTT GAT GGT
   250476  TGC * 11    30/33     TGC TGC TAC TGC TGC TGC TGC TGC TGC TTC TGG
   253299  CTG *  9    25/27     CTG CTG CTG GCG CTG CTG CTG CTG CTG
   253468  TTG *  7    19/21     TTG TTG TTG TTG TTT TTG TTT
   280795  AGC *  7    19/21     AGC AGC AGG AGC AGC AGG AGC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       286784 
 Total number of repeats detected..............       35 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      5       5       0       0       0       0       0       0       0       0       0       0       0   
  TGC      3       2       1       0       0       0       0       0       0       0       0       0       0   
  GAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      3       3       0       0       0       0       0       0       0       0       0       0       0   
  GCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAG      5       5       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   1 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    0 ACA +   2 CAA +   2 GTT +   1 TTG +    5 TGT      =   11 
   0 ATG +    0 TGA +   2 GAT +   0 CAT +   0 ATC +    0 TCA      =    2 
   1 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    1 
   0 AGG +    1 GGA +   1 GAG +   0 CCT +   0 CTC +    0 TCC      =    2 
   2 AGC +    3 GCA +   5 CAG +   2 GCT +   1 CTG +    3 TGC      =   16 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   1 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   1 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7294877|gb|AE003551.1|AE003551 Drosophila melanogaster genomic scaffold 142000013386050 section 38 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    13264  AAC *  8    22/24     AAC AAC ATC AAC AAC AAC AAT AAC
    23779  GGT *  7    19/21     GGT GGT GGA GGT GGA GGT GGT
    33713  TCT *  7    19/21     TCT TCT TCT CCT TCT CCT TCT
    35319  TGC *  7    19/21     TGC TGC TGC TGC TGA TGG TGC
    52983  TAA *  7    20/21     TAA TAA TAA TAA TAA TAA TAT
    53576  CCG *  7    19/21     CCG CTG CAG CCG CCG CCG CCG
    53749  TGC * 10    27/30     TGC TGC TGC TGC TGC TGC TGG AGC TGC TTC
    53818  TGC *  8    22/24     TGC TGC TGC TGC TGA TGT TGC TGC
    53872  TGC *  8    22/24     TGC TGC TGC TGC TGC TGC TGT TGG
    54457  TGC *  7    19/21     TGC TGG TGC TGT TGC TGC TGC
    56990  CCT *  7    19/21     CCT CTT CCT CCT CCT CCT GCT
    57975  GTT *  7    19/21     GTT ATT GTT GTT GTT GTT GCT
    91627  CAG *  7    19/21     CAG CAA CAG CAG CAG CAG CAA
    91669  CAG *  7    19/21     CAG CAG CAG CAG CAG CAA CAA
   112537  TTA *  7    19/21     TTA TTA TTT TTA TTA TTA TCA
   118885  GCA *  8    22/24     GCA GGA ACA GCA GCA GCA GCA GCA
   169758  CTG * 11    30/33     CTG CTG CTG TTG TTG CTG CTG CTG CTG CAG CTG
   169888  TGC * 14    38/42     TGC TGC TGC TGC TGC TGC TGT TGT TGC TGC TGC TGC TGC AGA
   179125  TTA *  7    19/21     TTA TTA TTA TTA TCA TTT TTA
   208315  AAT *  7    19/21     AAT AAT AAC AAT AAT AAC AAT
   212124  TTA *  7    20/21     TTA TTA TTA TTA TTA TTA TTT
   243047  CAT *  7    19/21     CAT CAT CAT CAT CAT CAG CAG
   253783  TTG *  8    23/24     TTG TTG TAG TTG TTG TTG TTG TTG
   279978  GCT *  7    20/21     GCT GCT GCT GCG GCT GCT GCT
   285517  ATT *  7    19/21     ATT ATT ATT ATT CGT ATT ATT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       285978 
 Total number of repeats detected..............       25 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTA      3       3       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      6       4       1       1       0       0       0       0       0       0       0       0       0   
  TCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   1 TAA +   1 ATT +   3 TTA +    0 TAT      =    6 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    1 TCT      =    1 
   1 AAC +    0 ACA +   0 CAA +   1 GTT +   1 TTG +    0 TGT      =    3 
   0 ATG +    0 TGA +   0 GAT +   1 CAT +   0 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   1 CCT +   0 CTC +    0 TCC      =    1 
   0 AGC +    1 GCA +   2 CAG +   1 GCT +   1 CTG +    6 TGC      =   11 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   1 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   1 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7294844|gb|AE003550.1|AE003550 Drosophila melanogaster genomic scaffold 142000013386050 section 37 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    33186  TGT *  7    19/21     TGT TGT TGT TGC TGT TAT TGT
    45333  AGC * 11    30/33     AGC AGC ATC AGC AGC AAC AGC AGC AGC AGC ATC
    63702  TCA * 10    27/30     TCA TCA CCA TCA TCA CCA TCA TCA TCA TCG
   102069  AAT * 10    27/30     AAT AAT AAT ATT AAT AAT AAT AAT AAT ATC
   103437  TAG *  8    22/24     TAG TAG TAG TAG TAG CAG TAG TAT
   112345  CTG *  8    22/24     CTG CTG CTG CTG CTG CTT CTA CTG
   161924  CAA *  7    19/21     CAA CAA CAA CAA CAA CAA ATA
   176606  AAG * 10    28/30     AAG AAG AAA AAG AAG AAG GAG AAG AAG AAG
   178598  TGC *  7    19/21     TGC TGT TGC TGC TGC TGC TGT
   178625  TGC * 14    39/42     TGC TGC TGC TGC TGC TGC TGC TGT TGA TGC TGC TGC TGC TGA
   178811  CTG *  9    25/27     CTG CTG ATG TTG CTG CTG CTG CTG CTG
   180179  TAT *  7    19/21     TAT CAT TAT TAT TAT GAT TAT
   185176  TGA *  8    23/24     TGA CGA TGA TGA TGA TGA TGA TGA
   192889  TCA *  8    22/24     TCA TCA TCA TCA TCG TCG TCA TCA
   205089  GTT *  8    22/24     GTT GTT GTT CTT GTT GTT GTT GTG
   211269  TTG *  7    19/21     TTG TAG TTG TTA TTG TTG TTG
   220455  CAG *  7    19/21     CAG CAG CAT CAC CAG CAG CAG
   220482  CAG * 11    30/33     CAG CAG CAA CAG CAA CAG CAG CAG CAG CAG CAA
   224000  CAG *  7    19/21     CAG CAG CAA CAG CAG CAG CAA
   224024  CAG * 11    30/33     CAG CAG CAA CAG CAG CAG CAA CAG CAG CAG CAA
   224063  CAG *  7    20/21     CAG CAG CAG CAG CAG CAG CAA
   224153  CAG * 18    50/54     CAG CAG CAG CAG CAA CAG CAG CAG CAG CAA CAA CAG CAG CAG CAG CAG CAA CAG
   226234  GAC *  8    22/24     GAC GAC GAC GAT GAC GAC GAG GAC
   228403  TGT *  8    22/24     TGT TGT TGT TGT TGT TGT TCT TGG
   228925  CTG * 11    30/33     CTG CTG CTG CTG CTG TTG TTG CTG CTG CTG CAG
   229104  GCT *  9    25/27     GCT GCT GCT GCT GCT GCT GCG GCT GGT
   229195  CTG *  8    22/24     CTG CTG CTG CTG CTG TTG CTG TTG
   230312  GCT * 11    30/33     GCT GCT GTT GCT GCT GTT GCT GCT GCT GCT CCT
   231256  TGC * 10    28/30     TGC TGC TGC TGC TGT TGC TGC TGC GGC TGC
   269408  CAG * 11    31/33     CAG GAG CAG AAG CAG CAG CAG CAG CAG CAG CAG
   284936  AAT *  7    19/21     AAT AAT AGT CAT AAT AAT AAT
   297696  TTG *  7    19/21     TTG TTG TTG TTG CTA TTG TTG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       298675 
 Total number of repeats detected..............       32 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  AAG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  AGC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGC      3       1       1       1       0       0       0       0       0       0       0       0       0   
  TCA      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      7       3       3       0       1       0       0       0       0       0       0       0       0   
  CTG      4       3       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   2 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    1 TAT      =    3 
   1 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    1 
   0 AAC +    0 ACA +   1 CAA +   1 GTT +   2 TTG +    2 TGT      =    6 
   0 ATG +    1 TGA +   0 GAT +   0 CAT +   0 ATC +    2 TCA      =    3 
   0 AGT +    0 GTA +   1 TAG +   0 ACT +   0 CTA +    0 TAC      =    1 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   1 AGC +    0 GCA +   7 CAG +   2 GCT +   4 CTG +    3 TGC      =   17 
   0 ACG +    0 CGA +   1 GAC +   0 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7294827|gb|AE003549.1|AE003549 Drosophila melanogaster genomic scaffold 142000013386050 section 36 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     8011  AGC *  8    24/24     AGC AGC AGC AGC AGC AGC AGC AGC
    16606  GAT *  9    25/27     GAT GAT GAT GAT GAT GGT GAT GAT GAA
    21592  CAT *  7    19/21     CAT CAT CAT TAT CAA CAT CAT
    34994  TAA *  8    22/24     TAA AAA AAA TAA TAA TAA TAA TAA
    47122  CCT *  7    19/21     CCT GCT CCT CCT CCT CCT CCA
    47291  GCT *  7    19/21     GCT GCT GCT GCT GCT GCT GGA
    58158  TGC * 10    28/30     TGC TGC TGC TGC TGC TGC TGC TTC TGC TGT
    71395  TGC *  8    22/24     TGC TGC TGC TCC TGA TGC TGC TGC
    83431  AAC *  7    20/21     AAC AAC AAG AAC AAC AAC AAC
   120917  TCA * 11    31/33     TCA TCA CCA TCA TCA TCA TCG TCA TCA TCA TCA
   128673  GCT *  7    19/21     GCT GCT GCT GTT GTT GCT GCT
   164320  AAG * 10    28/30     AAG AAG AAG AAG AAG AAG AAG ACG AAG AAT
   165585  CAG * 10    27/30     CAG CAG CAG CAG CGG CAG CGG CAG CAG CAA
   165648  CAG *  8    22/24     CAG CAG CAG CAG CAG CAG CAA CAA
   165996  TGC *  7    19/21     TGC TGC TGT TGC TGT TGC TGC
   167122  GAT *  8    22/24     GAT GAT GAA GAT GAG GAT GAT GAT
   167779  GAT * 10    28/30     GAT GAT GAT GAT GAT GAT GAT ATT GAT GAT
   168053  AAC *  7    19/21     AAC AAC AAC AAC CGC AAC AAC
   168581  GAT *  8    22/24     GAT GAT GAT GAT GAT GAA GAA GAT
   241107  ATG *  7    20/21     ATG ATG ATG ATG ATG ATG TTG
   278747  TTC *  7    19/21     TTC TTC TTC TTC GTC TTC TTG
   290831  GTT *  8    22/24     GTT GCT GTT GTC GTT GTT GTT GTT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       300477 
 Total number of repeats detected..............       22 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  AAC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      3       2       1       0       0       0       0       0       0       0       0       0       0   
  TCA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GAT      4       3       1       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   1 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   1 AAG +    0 AGA +   0 GAA +   0 CTT +   1 TTC +    0 TCT      =    2 
   2 AAC +    0 ACA +   0 CAA +   1 GTT +   0 TTG +    0 TGT      =    3 
   1 ATG +    0 TGA +   4 GAT +   1 CAT +   0 ATC +    1 TCA      =    7 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   1 CCT +   0 CTC +    0 TCC      =    1 
   1 AGC +    0 GCA +   2 CAG +   2 GCT +   0 CTG +    3 TGC      =    8 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7294819|gb|AE003548.1|AE003548 Drosophila melanogaster genomic scaffold 142000013386050 section 35 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    21442  AGC *  8    22/24     AGC AGC AGC CGC AGC AGC AGC GGC
    21517  GGC *  7    19/21     GGC GGC GGC GGC GGC AGC AGC
    21737  TGC *  7    19/21     TGC TGT TGT TGC TGC TGC TGC
    21811  CTG * 10    27/30     CTG TTG TTG CTG CTG CTG CTG CTG CTG GTG
    21892  CTG *  8    23/24     CTG CTG CTG CTG CTG CTG CTG TTG
    29668  ATC *  9    25/27     ATC ATT ATC ATT ATC ATC ATC ATC ATC
    30526  GTT *  7    19/21     GTT GTA GTT GTT GTT GTT GGT
    33334  GCC * 10    28/30     GCC GCC GCC TCC TCC GCC GCC GCC GCC GCC
    38705  CTG *  7    19/21     CTG CTG CTG CTG CTG TTG TTG
    38727  TGC *  8    22/24     TGC TGC TGC TGC TGC TGC TGT TGT
    44311  GAT *  7    19/21     GAT GAT CAT GAC GAT GAT GAT
    49445  ATG *  8    22/24     ATG ATG ATG ATG ATG ATG GTA ATG
    54957  CAA *  7    19/21     CAA TAA CAA GAA CAA CAA CAA
    70901  ATC *  8    22/24     ATC CTA ATC ATC ATC ATC ATC ATC
    71187  GCT *  7    19/21     GCT GGT ACT GCT GCT GCT GCT
    75738  TTG * 10    27/30     TTG TTG CTG TTG TTG TTG TTG TTG ATG ATG
    80350  CTG *  7    19/21     CTG CCA CTG CTG CTG CTG CTG
    92105  CAG *  9    25/27     CAG CAG CAG CAG CAG CAG CAG CAG GCG
    97895  TGT *  8    23/24     TGT TGT TGT TAT TGT TGT TGT TGT
    97922  TGT * 10    27/30     TGT TGT TGT TGT TGT TGT TGT TGG TGG TGG
   121464  AGC *  8    22/24     AGC AGC AGC ATA AGC AGC AGC AGC
   146535  GAG *  9    25/27     GAG GAG GAG GAG GAG GAG GAG AAG GAT
   150518  CAG *  7    19/21     CAG CAG CAG CAG CAA CTG CAG
   152832  TTG *  7    20/21     TTG TTG TTG TTG TTG TTG TAG
   162576  TGT *  8    22/24     TGT TGT TGT TGT TGC TGT TGC TGT
   177667  TGT *  7    19/21     TGT TGT TGT TTC TGT TGT TGT
   177721  TGT *  8    22/24     TGT TGT TGC TGC TGT TGT TGT TGT
   200690  CAT * 10    28/30     CAT CAT CAT CAT CAT CAT CAA CAT CGT CAT
   202501  TGA * 10    27/30     TGA TGA TGA TGA TCA TAA TGA TGA TGA GGA
   203056  ACA *  7    19/21     ACA GCA TCA ACA ACA ACA ACA
   208320  ACA *  7    19/21     ACA ACA AGA ACA ACA ACA GCA
   218204  GCA *  7    20/21     GCA GCA ACA GCA GCA GCA GCA
   218592  TGC *  8    22/24     TGC TGC TGC TGC TGC TGG TGC GGC
   220833  TGT * 10    27/30     TGT TGT TGT TGT TGT TTT TGT TGT TGC TGG
   221211  CAA * 11    30/33     CAA CAA CCA CAA CAG CAA CAA CAA CAA AAA CAA
   242044  TGA *  7    19/21     TGA TGA TGA TGA TGA CGA CGA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       244249 
 Total number of repeats detected..............       36 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  AGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  ACA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TTG      2       1       1       0       0       0       0       0       0       0       0       0       0   
  TGA      2       1       1       0       0       0       0       0       0       0       0       0       0   
  TGT      6       4       2       0       0       0       0       0       0       0       0       0       0   
  TGC      3       3       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CAA      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CAT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CAG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CTG      4       3       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    2 ACA +   2 CAA +   1 GTT +   2 TTG +    6 TGT      =   13 
   1 ATG +    2 TGA +   1 GAT +   1 CAT +   2 ATC +    0 TCA      =    7 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   1 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   2 AGC +    1 GCA +   2 CAG +   1 GCT +   4 CTG +    3 TGC      =   13 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   1 GGC +    0 GCG +   0 CGG +   1 GCC +   0 CCG +    0 CGC      =    2 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7294792|gb|AE003547.1|AE003547 Drosophila melanogaster genomic scaffold 142000013386050 section 34 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     1609  ATA *  8    22/24     ATA ATA GTA ATA ATA AGA ATA ATA
    14059  GCT *  7    19/21     GCT GCT CCT GCT GCT GCT GTT
    15191  CTG *  7    19/21     CTG CTG CTG CTG CTG CTG GGG
    16655  GCT *  8    22/24     GCT GCT GCT GTT GCT GCT GTT GCT
    17645  TGC * 12    33/36     TGC TGC TGC TGC TGC TGC TGC TGC TGC TGT TGG TGG
    17913  GCT * 14    38/42     GCT GCT GCT GTT GCT GCT GCT GCT GTT GCT GCT GTT GCT GGT
    17992  CTG *  9    25/27     CTG TTG CTG CTG CTG CTG TTG CTG CTG
    29225  GTT *  7    19/21     GTT GTA GTT GCT GTT GTT GTT
    29620  TGT *  7    19/21     TGT TGT TGC TGC TGT TGT TGT
    32439  TGC * 10    27/30     TGC TGA TGT TGC TGC TGC TGC TGC TGC TGT
    32497  TGC *  7    19/21     TGC TGC CGC TGC TGC TGC GGC
    33498  CAG *  7    19/21     CAG CAG CAG CAG CAG CAA CAC
    33640  CAG *  8    23/24     CAG CAG CAG CAG CAA CAG CAG CAG
    33729  GCA * 10    27/30     GCA GCA GCA GCA GCA GCA GCA ACA TCA GCG
    34098  CTG *  7    19/21     CTG CTG CTG CTG CTG TTG TTG
    34122  TTG *  7    19/21     TTG CTG TTG TTG TTG TTG CTG
    38002  CAA *  7    20/21     CAA CAC CAA CAA CAA CAA CAA
    38290  ACA *  8    23/24     ACA GCA ACA ACA ACA ACA ACA ACA
    63724  TTG *  8    22/24     TTG TTG TTG GTG TTG TTG TTG TTC
    66784  TTG *  7    21/21     TTG TTG TTG TTG TTG TTG TTG
    82515  CAT *  7    20/21     CAT CAT CAT CAC CAT CAT CAT
    86812  GCC *  7    19/21     GCC ACC GCC ACC GCC GCC GCC
    86888  CCA *  7    19/21     CCA CCA CCA CCA CCA CCT CCT
    93924  TGT *  8    22/24     TGT TGT TGT TGT TGT TGT TTT CGT
    94337  GTT *  7    20/21     GTT GTT GTT GTT GTT GTT GTC
   100046  TTG *  8    22/24     TTG TTG TTG TTG TTG TTG TTG TCT
   102381  ACA *  9    25/27     ACA ACA ACA ACA ACA ACA ACG TCA ACA
   102593  TTA *  7    19/21     TTA TTA TTA TTA TTA TTG TTG
   108684  TGC *  7    21/21     TGC TGC TGC TGC TGC TGC TGC
   110192  CTG *  8    22/24     CTG CTG CTG CTG CTT CTG CTA CTG
   115986  TTA *  8    22/24     TTA TTA TTA TTA TTA TTA TTT TTC
   118917  TCA *  7    19/21     TCA TCA TTA TCA TCA TCA TCC
   120127  GAA * 10    28/30     GAA GAA GAA GAA GAA GAA GAA GAG GGA GAA
   121764  ACA * 10    27/30     ACA GCA ACA ACA ACA ACA ACA ACA AGA AAA
   122275  TGT *  7    19/21     TGT TGT CGT TGT TGT TGT TGG
   133291  AAC * 12    34/36     AAC AAC AAC AAC AAC AAT AAC AGC AAC AAC AAC AAC
   147760  CAA *  7    19/21     CAA CAG CGA CAA CAA CAA CAA
   149149  TTG *  8    23/24     TTG TTG TTG TTG TTG TTT TTG TTG
   150725  AAC *  7    19/21     AAC AAT AAC ACC AAC AAC AAC
   150823  AAC *  8    22/24     AAC AAC AAC AAC AAC TAC AGC AAC
   151894  TGT *  8    22/24     TGT TGT TGT TGT TAT TGT TGC TGT
   161010  CTC *  7    19/21     CTC CTG TTC CTC CTC CTC CTC
   165688  ACA *  7    19/21     ACA GCA ACA ACA ACA ACA ATA
   166603  AGC *  7    19/21     AGC ATC ACC AGC AGC AGC AGC
   183174  AAC *  7    19/21     AAC AGC AAC AAC AGC AAC AAC
   188616  TGC *  7    19/21     TGC TCC TGC TCC TGC TGC TGC
   188650  CTG *  7    19/21     CTG CTG CTG CTC CAG CTG CTG
   188697  ATG * 21    57/63     ATG ATG TTG ATG ATG ATG ATG ATG ATG ATG CTG ATG ATG CTG ATG ATG CTG ATG ATG CTG GTG
   196962  CTG *  8    23/24     CTG CTA CTG CTG CTG CTG CTG CTG
   202840  TGT *  7    20/21     TGT TGT TGT TGT TAT TGT TGT
   202891  TGT *  7    19/21     TGT TGT TGT TGT TGT TGG TGG
   204332  AAC *  7    19/21     AAC CAC AAC AAA AAC AAC AAC
   206121  CAA *  7    19/21     CAA CAG CAA CAG CAA CAA CAA
   209052  TGT *  7    19/21     TGT TGT TGT TGC TTT TGT TGT
   217852  CAG *  8    22/24     CAG CAG CAA CAG CAG CAG GAG CAG
   218382  TTG * 10    27/30     TTG TTG TTG TTG TTC TTG TTG TTG TTC CTG
   219335  TTG *  7    19/21     TTG TTG TTG CTG TTG CTG TTG
   243142  ATG *  8    22/24     ATG GCG ATG ATG ATG ATG ATG ATG
   255955  CCT *  7    19/21     CCT CAT CCT CGT CCT CCT CCT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       281396 
 Total number of repeats detected..............       59 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      5       4       1       0       0       0       0       0       0       0       0       0       0   
  ATA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATG      2       1       0       0       0       1       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      4       3       1       0       0       0       0       0       0       0       0       0       0   
  TTA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TTG      7       6       1       0       0       0       0       0       0       0       0       0       0   
  TGT      7       7       0       0       0       0       0       0       0       0       0       0       0   
  TGC      5       3       2       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GTT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GCT      3       2       0       1       0       0       0       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      3       3       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      3       3       0       0       0       0       0       0       0       0       0       0       0   
  CTG      6       6       0       0       0       0       0       0       0       0       0       0       0   
  CTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    1 ATA +   0 TAA +   0 ATT +   2 TTA +    0 TAT      =    3 
   0 AAG +    0 AGA +   1 GAA +   0 CTT +   0 TTC +    0 TCT      =    1 
   5 AAC +    4 ACA +   3 CAA +   2 GTT +   7 TTG +    7 TGT      =   28 
   2 ATG +    0 TGA +   0 GAT +   1 CAT +   0 ATC +    1 TCA      =    4 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   1 CCT +   1 CTC +    0 TCC      =    2 
   1 AGC +    1 GCA +   3 CAG +   3 GCT +   6 CTG +    5 TGC      =   19 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    1 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   1 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7294749|gb|AE003546.1|AE003546 Drosophila melanogaster genomic scaffold 142000013386050 section 33 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     7457  CTG *  9    25/27     CTG CTG CTG CTG CTG CTG CTG CTG GTT
     7731  TGC *  7    19/21     TGC TGC TGC GTC TGC TGC TGC
    10199  TGC *  8    22/24     TGC CGC TGC TGC TGC TGC TGC TGA
    36767  TGC *  9    25/27     TGC TGC TGC TGC TGT TGT TGC TGC TGC
    50951  TTA *  7    19/21     TTA TTA TTA TTA TTA TTT TTG
    51956  GCA *  7    19/21     GCA GCA GCA GCA GCA ACA GCG
    52825  GCA *  8    23/24     GCA GCA GCA GCA GCA GCA GCA ACA
    54185  CAG * 11    31/33     CAG CAG CAA CAA CAG CAG CAG CAG CAG CAG CAG
    54392  GCG *  8    22/24     GCG GCG GCG GCG GAG GCG GCG GGG
    62586  ACC *  8    22/24     ACC ACC ACT ACC ACA ACC ACC ACC
    66084  CCA *  7    19/21     CCA CCA CCA CTT CCA CCA CCA
    78671  GCG *  7    19/21     GCG GCG GCG GCG GCG GCT GCA
    91588  TCA * 10    27/30     TCA TCG TCA TCA TCA TCA TCA TCA TCG TCG
   118223  TTA *  7    19/21     TTA TTA TTA TTA TTA TTA TAT
   124395  TTG *  7    20/21     TTG TTG TTG TTG TTG TTG TTC
   139388  ATC *  8    22/24     ATC ATC ATC ATC ATC ATC ATC CTG
   147446  AGC * 11    30/33     AGC AAC AGC AGC AGC AGC CGC AGC AGC AAC AGC
   148722  GCA * 11    31/33     GCA GCA GCA GCA GCA GCC GCA GCA GCA GCA TCA
   148945  CAA *  8    22/24     CAA CAC CAA CAG CAA CAA CAA CAA
   161680  CAT * 14    38/42     CAT CAT CCA CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CCC
   165620  GGT *  7    20/21     GGT GAT GGT GGT GGT GGT GGT
   166478  TCT *  7    19/21     TCT TCT TCC TCT TCT TCT TGT
   170710  CAG *  8    22/24     CAG CAG CAG CGG CAG CAG CAG CAA
   171420  CAG * 10    27/30     CAG CAG CAA CAT CAG CAG CAG CAG CAG CAA
   173532  GCT *  7    19/21     GCT GCT GCT GCT GCT GCA GTT
   178606  CAG *  8    22/24     CAG CCC CAG CAG CAG CAG CAG CAG
   178755  TGC * 10    27/30     TGC TGC TGC TGC TGC TGG TGC TGC TGC AGT
   183217  GTT *  8    22/24     GTT GTT GTT GTT GTT GCT GCT GTT
   185313  AAT * 10    28/30     AAT AAT AAT AAT AAT AAT AAC AAC AAT AAT
   190631  AAC * 12    33/36     AAC AAC AAC AAC AAC AAC AAC AAC AAC AAA CAA AAC
   194002  TGC *  7    19/21     TGC TGC TGC TGT TGC AGC TGC
   218219  GCA *  7    19/21     GCA GCG GCA GCG GCA GCA GCA
   219826  TCA *  7    19/21     TCA TCA TCA TCA TCA TTA GCA
   219883  TGC *  7    19/21     TGC TGC TGT TGC TGC TGC TGT
   220103  CTG *  8    22/24     CTG CTG TTG CTG CTG CTG CTG TTG
   220150  TGC *  7    20/21     TGC TGC TGC TGC TGC TGC AGC
   224734  TGC * 10    27/30     TGC TGC TGT TGC TGC TGC TGC TGC TGT TGA
   225229  TGG * 14    38/42     TGG TAG TGG TTG TGG TGG TGG TGG TGG TGG TGG TGG TGC TGC
   225934  CAG *  7    20/21     CAG CAG CAG CAG CAG CAA CAG
   229493  GCA * 10    27/30     GCA GCA GCA GCA GCA GCA GCA CCA CCA CCA
   231279  TGC *  8    22/24     TGC TGC CGC TGC TGC TGC TGC TGT
   233116  GCA *  7    19/21     GCA GCA ACA GCA GCA GCA ACA
   235172  GCA * 11    31/33     GCA ACC GCA GCA GCA GCA GCA GCA GCA GCA GCA
   235369  TGC *  8    22/24     TGC TGC TGC TGC TGT TGC TGC TGT
   235472  GCA *  8    23/24     GCA GCA GCA GCA GCA ACA GCA GCA
   235618  TGC *  7    19/21     TGC TGC TGC TGT TGC TGC TGT
   236005  TGC *  7    19/21     TGC CGC TGC TGC TGC TGC TGG
   237788  CAA * 10    27/30     CAA CAC CAA CAA CAG CAA CAA CAA CAA CAC
   237827  CAA *  7    19/21     CAA CAA CAA CGG CAA CAA CAA
   265756  TCA *  7    20/21     TCA TCA TCA TCA TCA TCA TTA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       281602 
 Total number of repeats detected..............       50 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  AAC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  ATC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  ACC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       0       0       1       0       0       0       0       0       0       0       0       0   
  TGC     12      10       2       0       0       0       0       0       0       0       0       0       0   
  TCA      3       2       1       0       0       0       0       0       0       0       0       0       0   
  TCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      8       5       3       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAA      3       2       1       0       0       0       0       0       0       0       0       0       0   
  CAT      1       0       0       1       0       0       0       0       0       0       0       0       0   
  CAG      5       3       2       0       0       0       0       0       0       0       0       0       0   
  CTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   2 TTA +    0 TAT      =    3 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    1 TCT      =    1 
   1 AAC +    0 ACA +   3 CAA +   1 GTT +   1 TTG +    0 TGT      =    6 
   0 ATG +    0 TGA +   0 GAT +   1 CAT +   1 ATC +    3 TCA      =    5 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   1 AGC +    8 GCA +   5 CAG +   1 GCT +   2 CTG +   12 TGC      =   29 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   1 ACC +    1 CCA +   0 CAC +   1 GGT +   0 GTG +    1 TGG      =    4 
   0 GGC +    2 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    2 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7294729|gb|AE003545.1|AE003545 Drosophila melanogaster genomic scaffold 142000013386050 section 32 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    45876  CAT *  7    19/21     CAT CAT CAT CAT CAA CAA CAT
    46279  GCT * 11    30/33     GCT GCT GCT GCT GTT GTT GCT GCT GCT GCT GTT
    62579  TGT *  7    19/21     TGT TGT TGT TAT TGC TGT TGT
    64786  GCT * 12    33/36     GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCC GGG
    98297  TGT *  7    19/21     TGT TGG TGT TGT TGT TGC TGT
   133147  ATG *  7    20/21     ATG ATG ATG ATG ATG ATG ATA
   150424  TCA * 12    33/36     TCA TCA TCA TCA TCA TCA GCA TCA GCA TCA GCA TCA
   156019  AGC *  9    25/27     AGC AGC AGC AGC AGC AGC AAC AGC AGT
   156937  CGC *  7    19/21     CGC CGC CGC CGC TGC TGC CGC
   162302  CAG * 10    27/30     CAG CAG CAG CAG CAT CAG CAG CAG CAG ATG
   162412  GCA * 10    27/30     GCA ACC GCA GCA GCA GCA GCA GCA GCA CCA
   162458  CAG *  7    19/21     CAG CAG CAG CAG CAG CAA CAA
   167764  TAA *  9    25/27     TAA TAA CAA CAA TAA TAA TAA TAA TAA
   171040  AAT *  7    19/21     AAT AAT AAT AAT AAC AAT AAA
   177144  CAG *  7    19/21     CAG CAG CAG CAG CAG CAA CAA
   181414  AAT *  7    19/21     AAT AAT AAT AAT AAT AAA AAA
   190339  TGT *  8    22/24     TGT TGT TGT TGT TGT TGT TGT TTG
   198892  TTG *  7    19/21     TTG TTG TTG TTG TTG TTG GTT
   199512  CAA *  8    23/24     CAA CAA CAA CAA CAA CAA CTA CAA
   205005  TGT *  7    19/21     TGT TAT TGT TGT TGT TGC TGT
   205060  GTT *  9    25/27     GTT GTT GTT GTT GTT GTT GTT GCT TTT
   206534  TCA *  7    20/21     TCA TCA TCA TCA TCA TCA TCC
   223682  CTG *  7    19/21     CTG CTG CTG CCG CTG CTG CTT
   229012  TTA *  8    22/24     TTA ATA TTA TTA TTT TTA TTA TTA
   250158  CTG *  8    22/24     CTG CTG CTG CTG CTG CTG CTG GCG
   254737  AAC *  8    22/24     AAC AAC AAC AGC AGC AAC AAC AAC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       281893 
 Total number of repeats detected..............       26 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      4       4       0       0       0       0       0       0       0       0       0       0       0   
  TCA      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GCT      2       0       2       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      3       2       1       0       0       0       0       0       0       0       0       0       0   
  CTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   2 AAT +    0 ATA +   1 TAA +   0 ATT +   1 TTA +    0 TAT      =    4 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    0 ACA +   1 CAA +   1 GTT +   1 TTG +    4 TGT      =    8 
   1 ATG +    0 TGA +   0 GAT +   1 CAT +   0 ATC +    2 TCA      =    4 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   1 AGC +    1 GCA +   3 CAG +   2 GCT +   2 CTG +    0 TGC      =    9 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    1 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7294680|gb|AE003544.1|AE003544 Drosophila melanogaster genomic scaffold 142000013386050 section 31 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    45481  ATA *  8    23/24     ATA ATA ATA ATA ATT ATA ATA ATA
    97976  GAT *  9    25/27     GAT CAC GAT GAT GAT GAT GAT GAT GAT
   115940  ACA *  7    19/21     ACA ACA ACA ACA ACT ACA ACG
   116660  ACA *  7    19/21     ACA ACA ACA ACA ACT ACA ACG
   124322  ATA * 10    27/30     ATA ATA ATA ATA ATA ATA ATA TTT ATA AAA
   129692  TGC *  8    23/24     TGC TGC TGT TGC TGC TGC TGC TGC
   129773  TGC * 11    30/33     TGC TGT TGC TGC TGC TGC TGC TGC TGT TGC TGT
   129812  TGC *  8    22/24     TGC TGC TGC TGC TGC TGC AAC TGC
   130956  TGC * 11    30/33     TGC TGC TGC ATC TGC TGC TGC TGC TGC TGC TGG
   131270  CTG *  7    19/21     CTG CTG CTG TTG CTG CTG CGG
   132307  ATA *  7    19/21     ATA ATC ATA ATA GTA ATA ATA
   134983  CAT *  7    19/21     CAT CAC CAT CAC CAT CAT CAT
   138121  AAT *  7    19/21     AAT AAT AAT AAT AAT ATT ATT
   143808  TAT *  7    20/21     TAT TAT TAT TAA TAT TAT TAT
   177309  AAC * 10    28/30     AAC AAC AAC AAC AAC AAC AAC AAT AAT AAC
   180435  CAA *  7    19/21     CAA CAA TAA CAA CAA CAG CAA
   181157  GCA * 11    30/33     GCA GCA ACA GCA GCA GCA GCA GAA GCA ACA GCA
   186301  CAG * 10    27/30     CAG CAA CAG CAG CAG CAG CAG CAG CAG TTG
   187862  TCA *  7    19/21     TCA TCA TCA TAA TCA TCA GCA
   191009  CAG *  7    19/21     CAG TCG CAG CAG CAG CAG CAG
   191147  ACA *  8    22/24     ACA ACA ACA ACA ACA ACA GCA GCA
   191190  CAG *  7    19/21     CAG CAG CAG CAG CAA CAC CAG
   191328  AGC *  7    19/21     AGC AGC AGC AGC AGC AGC AAA
   191797  CAA *  8    22/24     CAA CAC CAA CAA CAC CAA CAA CAA
   196386  ATT *  7    20/21     ATT ATT ATT ATT ATT GTT ATT
   206114  AAC * 10    28/30     AAC AAG CAC AAC AAC AAC AAC AAC AAC AAC
   209082  AAT *  7    19/21     AAT AAT AAC AAT AAT CAT AAT
   209115  CAC *  7    19/21     CAC CAC CAT CAT CAC CAC CAC
   209304  AGC * 11    30/33     AGC AGC AGC AGC AGC AGC AGC AAC AGC AAC AAC
   211940  CCA *  9    25/27     CCA ACA CCA CCA CCA TCA CCA CCA CCA
   217435  TAT *  7    20/21     TAT TAT TAT TAT TAT TAT TAC
   224993  GTT *  7    19/21     GTT GTT GTT GTT GTG GTT GAT
   226624  AGC *  7    19/21     AGC AGC AAC ACC AGC AGC AGC
   226656  CAG *  7    19/21     CAG CAG TAG CAA CAG CAG CAG
   235414  GTA *  8    22/24     GTA GTA GTA GTA GTA GTC GTA ATA
   249495  GTG *  7    19/21     GTG GTG GTG GTA GTG GTA GTG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       281869 
 Total number of repeats detected..............       36 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  AAC      2       0       2       0       0       0       0       0       0       0       0       0       0   
  ATA      3       2       1       0       0       0       0       0       0       0       0       0       0   
  ATT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      3       2       1       0       0       0       0       0       0       0       0       0       0   
  ACA      3       3       0       0       0       0       0       0       0       0       0       0       0   
  TAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGC      4       2       2       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CAA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      4       3       1       0       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   2 AAT +    3 ATA +   0 TAA +   1 ATT +   0 TTA +    2 TAT      =    8 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   2 AAC +    3 ACA +   2 CAA +   1 GTT +   0 TTG +    0 TGT      =    8 
   0 ATG +    0 TGA +   1 GAT +   1 CAT +   0 ATC +    1 TCA      =    3 
   0 AGT +    1 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    1 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   3 AGC +    1 GCA +   4 CAG +   0 GCT +   1 CTG +    4 TGC      =   13 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    1 CCA +   1 CAC +   0 GGT +   1 GTG +    0 TGG      =    3 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7294631|gb|AE003543.1|AE003543 Drosophila melanogaster genomic scaffold 142000013386050 section 30 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    90724  ATA *  7    19/21     ATA ATA ATT ATA ATA ATA TTA
   152622  GCA *  7    19/21     GCA GCA ACA GCA ACA GCA GCA
   153658  CCA *  8    23/24     CCA GCA CCA CCA CCA CCA CCA CCA
   209575  TAT *  8    22/24     TAT TAA TAA TAT TAT TAT TAT TAT
   247461  CAA *  7    19/21     CAA CAA CAA CAC CAA CAG CAA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       284386 
 Total number of repeats detected..............       5 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    1 ATA +   0 TAA +   0 ATT +   0 TTA +    1 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   1 CAA +   0 GTT +   0 TTG +    0 TGT      =    1 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    1 GCA +   0 CAG +   0 GCT +   0 CTG +    0 TGC      =    1 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    1 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7294592|gb|AE003542.1|AE003542 Drosophila melanogaster genomic scaffold 142000013386050 section 29 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    14626  AAC *  8    22/24     AAC AAC AAC AAC AAC AAC AAA ACC
    18415  CAG * 10    27/30     CAG CAG CAA CAG CAG CAG CAG TAG CAG CAC
    21378  CCA *  8    22/24     CCA CCA CCA CCA CCA CTA TCA CCA
    27950  GCA *  7    19/21     GCA GCA GTA GCA GCA GCA GAA
    29557  AAT *  7    19/21     AAT AAT AAT AGT AAT AAT AAA
    29578  TAA * 10    28/30     TAA TAA TAA TAA TAA TAA TAA TAA TAA ACA
    49959  GAT *  8    22/24     GAT GAT GAC GAT GAT GAT GGT GAT
    57629  TAT *  7    21/21     TAT TAT TAT TAT TAT TAT TAT
    68167  GCA * 10    28/30     GCA AAA GCA GCA GCA GCA GCA GCA GCA GCA
    71718  ACA *  7    19/21     ACA ACA ACA ACA AAA ACA ACT
    75473  AGC *  7    19/21     AGC AAA AGC AGC AGC AGC AGC
    91769  GCT *  8    22/24     GCT GCT GCT GCT GCT GCT GCT ACC
   145685  AAT *  7    19/21     AAT GAA AAT AAT AAT AAT AAT
   177426  CAT *  8    22/24     CAT CAT CAT CAT CAT CAT CGT CCT
   186294  CAG *  7    19/21     CAG CAG CAG GCG CAG CAG CAG
   188340  TAT *  7    19/21     TAT TAT TAT TAA TAT TAT TCT
   193506  TCC * 12    33/36     TCC TCC TCC TCC TCC TCC TCC TCC TCG TCT TCT TCC
   199677  CAA * 10    27/30     CAA CAA TAA CAA CAA CAA CAA CAA CAG GAA
   207852  GTT *  8    22/24     GTT GTT GTT GTT GTT GTT GTT CCT
   220741  CAA *  9    25/27     CAA CAA CTA CAA CAA CAG CAA CAA CAA
   225609  TAT *  8    22/24     TAT TAA TAT TAT TAT TAT TAA TAT
   251999  TGA *  8    23/24     TGA TGA TGA TGA TGA TGA TGA TGG
   263651  CAA * 10    27/30     CAA CAA CAA CAA CAA CAA CAG CAA CAG CCA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       289887 
 Total number of repeats detected..............       23 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TAT      3       3       0       0       0       0       0       0       0       0       0       0       0   
  TGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      3       1       2       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   2 AAT +    0 ATA +   1 TAA +   0 ATT +   0 TTA +    3 TAT      =    6 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    1 ACA +   3 CAA +   1 GTT +   0 TTG +    0 TGT      =    6 
   0 ATG +    1 TGA +   1 GAT +   1 CAT +   0 ATC +    0 TCA      =    3 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    1 TCC      =    1 
   1 AGC +    2 GCA +   2 CAG +   1 GCT +   0 CTG +    0 TGC      =    6 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    1 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7294556|gb|AE003541.1|AE003541 Drosophila melanogaster genomic scaffold 142000013386050 section 28 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    23834  AGG *  7    19/21     AGG AGT AGG AGG AGC AGG AGG
    36123  TTA *  7    19/21     TTA CTA CTA TTA TTA TTA TTA
    50252  GAA *  8    22/24     GAA AAA GAA GAA GAA GAA GAA GAC
    50403  AAG *  8    23/24     AAG AAG AAG AAA AAG AAG AAG AAG
    50547  AAG *  8    22/24     AAG AAG AAG AAG AGC AAG AAG AAG
    58781  CCG *  7    20/21     CCG CCG CCG CCG CTG CCG CCG
    59096  TGC *  7    19/21     TGC TGG TGC AGC TGC TGC TGC
   108319  TTC *  8    22/24     TTC GTC TGC TTC TTC TTC TTC TTC
   110470  GCA * 14    38/42     GCA GCA GCA GCA GCA GCA GCA GCG GCA GCG GCA GCA GCG GCG
   112884  CAG * 11    30/33     CAG CAG CAG CAT CAG CAG CAG CAG CAG CAA CAT
   119887  CAT *  7    20/21     CAT CAT CAT CAT CAT CAT CAC
   131080  GCC *  8    23/24     GCC GCC GCC GCC GCC GCC GCC GCA
   137694  AGT *  7    19/21     AGT AGT AGT AGT AGT ATT GGT
   144014  AGC * 10    28/30     AGC AGC AGC AGC AGC AGC AGC AGC AAC AAC
   145532  GCA *  7    20/21     GCA GCA GCA GCA GCA GCA ACA
   153572  GCA *  8    22/24     GCA ACA CCA GCA GCA GCA GCA GCA
   153943  GAG *  8    22/24     GAG GAT GAG CAG GAG GAG GAG GAG
   155792  TCG *  7    19/21     TCG GAG TCG TCG TCG TCG TCG
   214628  TGA * 10    27/30     TGA TAA TGA TGA TGG TGA TGA TGA TGA TGT
   236571  GCG *  7    19/21     GCG GCG GCG GCG GTG GCG GTG
   236612  AGC *  8    22/24     AGC AGC AGC AGC AAC AGC ATC AGC
   246563  GCA *  8    22/24     GCA GCC GCC GCA GCA GCA GCA GCA
   246739  GTT * 12    33/36     GTT GTT GTT GTT GTT GTT ATT GTT GTG GTT GCT GTT
   246893  TGC * 12    33/36     TGC TGC TGC TGC TGA TGT TGC TGC TGC TGG TGC TGC
   247942  TGC *  8    22/24     TGC TGC CGC TGC TGC TGC TGC TGA
   249422  AGC *  9    25/27     AGC AGC AGC AGC AGC AGC AGC AGC AAT
   250642  ACA *  7    19/21     ACA AGA ACA ACA GCA ACA ACA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       265547 
 Total number of repeats detected..............       27 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  AGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      3       2       1       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGC      3       2       1       0       0       0       0       0       0       0       0       0       0   
  TCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GCA      4       3       0       1       0       0       0       0       0       0       0       0       0   
  GCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   1 TTA +    0 TAT      =    1 
   2 AAG +    0 AGA +   1 GAA +   0 CTT +   1 TTC +    0 TCT      =    4 
   0 AAC +    1 ACA +   0 CAA +   1 GTT +   0 TTG +    0 TGT      =    2 
   0 ATG +    1 TGA +   0 GAT +   1 CAT +   0 ATC +    0 TCA      =    2 
   1 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    1 
   1 AGG +    0 GGA +   1 GAG +   0 CCT +   0 CTC +    0 TCC      =    2 
   3 AGC +    4 GCA +   1 CAG +   0 GCT +   0 CTG +    3 TGC      =   11 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    1 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    1 GCG +   0 CGG +   1 GCC +   1 CCG +    0 CGC      =    3 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7294528|gb|AE003540.1|AE003540 Drosophila melanogaster genomic scaffold 142000013386050 section 27 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     8656  TTA *  8    23/24     TTA TTA TTA TTA TTA TTA TTA ATA
     9226  TTG * 11    31/33     TTG TTG TTG TTG TTG TTG CTG TTG TTG TTG CTG
     9262  GTT *  8    22/24     GTT GTT GTT GCT GTT GTT GTT GTC
    10495  TTG *  9    26/27     TTG TTG ATG TTG TTG TTG TTG TTG TTG
    37299  ATG * 10    27/30     ATG ATG GTG GTG ATG ATG ATG ATG ATG ATT
    66967  GAT *  7    19/21     GAT GAT GAT GAT GAT GAT GGA
    94740  CAG *  7    19/21     CAG CAG CAG CAA CAA CAG CAG
   156666  ATC *  7    19/21     ATC ATC GTC ATC ATC ATC ATT
   170991  GCA *  8    22/24     GCA ACA GCA GCA GCA GCA GCA ACA
   178145  CAA *  7    19/21     CAA CAG CAA CAA CAA CGA CAA
   181021  AGC *  8    23/24     AGC AGC AGC AGC AGC AGC AGC GGC
   181052  AGC *  8    22/24     AGC AGC AGC AGC AGC AGC AAC ACC
   181201  TGC *  7    19/21     TGC TGC TGT TGT TGC TGC TGC
   181264  TGC *  8    23/24     TGC TGT TGC TGC TGC TGC TGC TGC
   181327  CAA *  8    22/24     CAA CAA CAA CAA CAA CAA CAA GAC
   182827  ACA *  7    19/21     ACA GCA ACA ACA ACA ACA GCA
   185112  CAG * 12    33/36     CAG CAG CAG CAG CAG CAG CGG CAG GAG CAG GAG CAG
   192835  TAT *  7    19/21     TAT TAT TAG TAT TAT TAT TTT
   206445  CAC *  7    20/21     CAC CAC CAC CAC CAC CAC TAC
   208640  TGC *  7    19/21     TGC TGC TGC TGC TGC TGC TTT
   212472  GCT * 14    38/42     GCT GCT GCT GCT GCT GCT GCT GCT CCT GCT GTT GCT GTT GTT
   212963  TGC *  7    19/21     TGC TGC TGA TGC TTC TGC TGC
   235950  CAT *  7    19/21     CAT CAT CAT CAT CAC CAC CAT
   241033  CGT * 15    41/45     CGT CGT CGT CGT CGT CGT CGT CGT CGT CGA CGT TCT CGT TGT CGT
   248419  GCC *  7    19/21     GCC GCT GCC GCT GCC GCC GCC
   252913  CAC *  7    20/21     CAC CAC CAC CAT CAC CAC CAC
   253462  GCT *  8    22/24     GCT GCT CCC GCT GCT GCT GCT GCT
   253778  TGC *  7    19/21     TGC TGC TGC TGC AAC TGC TGC
   253800  GCT *  7    19/21     GCT GCT GTT GCT GAT GCT GCT
   254073  GCT * 12    33/36     GCT GCT GCT GAT TCT GCT GCT GCT GCT GCT GCT GTT
   278615  TGC *  9    25/27     TGC TGC TGC AGT TGC TGC TGC TGC TGC
   278713  CTG * 15    41/45     CTG CTG CAA CTG CTG CTG CTG CTG CTG CGG CTG CTG CTG CTG CGG
   278918  TGC *  7    19/21     TGC TGC GCC TGC TGC TGC TGC
   278942  TGC *  8    22/24     TGC TGC TGC TGC TGC TGC TGC AGA
   281691  CAA *  8    22/24     CAA CCA CAA CAA CAA CAA CAA CGA
   284991  CCG *  8    23/24     CCG CCG CCG CCG CCG CCG CCA CCG
   287862  CCA *  8    22/24     CCA CCA CCA CCA GCA CCA CCA GCA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       297385 
 Total number of repeats detected..............       37 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  ATC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      2       1       1       0       0       0       0       0       0       0       0       0       0   
  TGC      8       8       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      4       2       1       1       0       0       0       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      3       3       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CAC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       0       0       1       0       0       0       0       0       0       0       0       0   
  CGT      1       0       0       1       0       0       0       0       0       0       0       0       0   
  CCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   1 TTA +    1 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    1 ACA +   3 CAA +   1 GTT +   2 TTG +    0 TGT      =    7 
   1 ATG +    0 TGA +   1 GAT +   1 CAT +   1 ATC +    0 TCA      =    4 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   2 AGC +    1 GCA +   2 CAG +   4 GCT +   1 CTG +    8 TGC      =   18 
   0 ACG +    0 CGA +   0 GAC +   1 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    1 CCA +   2 CAC +   0 GGT +   0 GTG +    0 TGG      =    3 
   0 GGC +    0 GCG +   0 CGG +   1 GCC +   1 CCG +    0 CGC      =    2 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7294496|gb|AE003539.1|AE003539 Drosophila melanogaster genomic scaffold 142000013386050 section 26 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     5664  GCT *  8    22/24     GCT GCT GCT GCT GCT GCT ACT GAT
    11202  TCA *  7    19/21     TCA TCA TCT TCA TCA TCT TCA
    15239  TGT *  8    22/24     TGT TGT TGT TGG TGT TGT TGT TTT
    19068  CAG *  7    19/21     CAG CAC CAG CAG CAG GAG CAG
    31743  TGG *  8    22/24     TGG TGG TGG TGG TGG TGG TGG CTG
    47475  ACG *  7    19/21     ACG AAG ACG ACG ACG ACG TCG
    54310  AGG *  7    19/21     AGG AGG ACG ATG AGG AGG AGG
    61303  GAT *  7    19/21     GAT CAT GAT GAT AAT GAT GAT
    69396  GAT *  8    23/24     GAT GAT GAT GAT GAT GAT GGT GAT
   101109  TTG *  7    19/21     TTG TTG TTC TTG TTG TTC TTG
   112842  AAC *  7    19/21     AAC AAA AAC AAC AAT AAC AAC
   117058  TGC * 11    30/33     TGC TGT TGC TGC TGC TGC TGC TGT TGC CGC TGC
   117100  TGC *  8    22/24     TGC TTT TGC TGC TGC TGC TGC TGC
   216073  ATA *  7    19/21     ATA ATA ATA ATA ATA AGA ACA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       271729 
 Total number of repeats detected..............       14 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       1       1       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    1 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    0 ACA +   0 CAA +   0 GTT +   1 TTG +    1 TGT      =    3 
   0 ATG +    0 TGA +   2 GAT +   0 CAT +   0 ATC +    1 TCA      =    3 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   1 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   0 AGC +    0 GCA +   1 CAG +   1 GCT +   0 CTG +    2 TGC      =    4 
   1 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    1 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7294470|gb|AE003538.1|AE003538 Drosophila melanogaster genomic scaffold 142000013386050 section 25 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

      772  TTG *  7    19/21     TTG TTG CTG TTG TTG TTG CTG
    18471  CAG *  8    22/24     CAG CAG CAT CAG CAG CAG CAG CAC
    26099  TGA *  9    25/27     TGA TTA TGA TGA TGA TGA TGA TGA TGC
    26410  ACA *  7    19/21     ACA ACA CCA ACA ACA GCA ACA
    27923  GCA *  7    21/21     GCA GCA GCA GCA GCA GCA GCA
    48718  CAG *  8    22/24     CAG CAG CAG CAA CAA CAG CAG CAG
    49194  AGC * 10    27/30     AGC AGC CGC AGC AGC AGC AGC AAC AGC ATC
    49322  CAG *  7    19/21     CAG CCG CAG CAG CAG CAG CAA
    52801  GAT * 11    31/33     GAT GAT GAT GAT GAT GAT GAT GAT GAT GAA GGT
    55506  CTG * 13    36/39     CTG CTG CTC CTA CTG CTG CTG CTG CTG CTG CTG CTG TTG
    58763  AGC *  7    19/21     AGC AGC AGC AGC AGT AGC TGC
    87878  TCA *  7    19/21     TCA TCA TCA TCA TCG TCG TCA
   107544  ATG *  8    22/24     ATG ATG ACG ATG ATG ATG ATG CTG
   120580  CAG *  7    19/21     CAG CAG CAG GAG CAG GAG CAG
   129828  CAG *  7    20/21     CAG CAG CAG CAG CGG CAG CAG
   182343  GCA *  9    25/27     GCA ACG GCA GCA GCA GCA GCA GCA GCA
   182383  GCA *  7    19/21     GCA ACA GCA GCA GCA GCA ACA
   185712  GTC *  7    19/21     GTC GTC GTC GTT GTC GTT GTC
   206060  GCA *  8    22/24     GCA GCA GCA GAA GCA GCA GCA GGA
   207870  GAT *  7    19/21     GAT GAT GAT GAT GAT GAT GTC
   212571  CGT *  9    25/27     CGT CGT CAT CGC CGT CGT CGT CGT CGT
   220702  ACA *  7    19/21     ACA ACA ACA ACA GCT ACA ACA
   240710  TGA *  7    19/21     TGA TGA TGC CGA TGA TGA TGA
   242197  GCT *  8    22/24     GCT GCT GCT GTT GCT GCT GCT GTT
   242365  GCA *  8    22/24     GCA GCA ACA ACA GCA GCA GCA GCA
   255779  TCA *  8    22/24     TCA TCA TCA GCA TCA GCA TCA TCA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       303715 
 Total number of repeats detected..............       26 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      2       1       1       0       0       0       0       0       0       0       0       0       0   
  ACA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GAT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      5       5       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      5       5       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       0       0       1       0       0       0       0       0       0       0       0       0   
  CGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    2 ACA +   0 CAA +   0 GTT +   1 TTG +    0 TGT      =    3 
   1 ATG +    2 TGA +   2 GAT +   0 CAT +   0 ATC +    2 TCA      =    7 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   2 AGC +    5 GCA +   5 CAG +   1 GCT +   1 CTG +    0 TGC      =   14 
   0 ACG +    0 CGA +   0 GAC +   1 CGT +   1 GTC +    0 TCG      =    2 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7294453|gb|AE003537.1|AE003537 Drosophila melanogaster genomic scaffold 142000013386050 section 24 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

      569  GCT *  7    19/21     GCT GCT TCT GCT CCT GCT GCT
    11194  CGA *  7    19/21     CGA CGA CGA CGA CGG CGA CGT
    23302  CAG *  8    22/24     CAG CAG CAG CAG CAG CAG CAA CAA
    29774  GTT *  7    19/21     GTT GTT GTT GCT GCT GTT GTT
    30728  TGC *  8    23/24     TGC TGC TGC TGC TGC TGC TGC TAC
    63041  TGT *  7    19/21     TGT TGT TGT TGT GGT TGT TAT
    68107  TGT *  7    19/21     TGT TGT TGC TGT TGT TGA TGT
    89127  AGC * 11    31/33     AGC AGC AGC AGC AGC AGC AGC AGC AGC AGC ACG
    95879  TAA *  7    20/21     TAA TAA TAA TAA TAA TAA TAC
   105035  TGC *  7    19/21     TGC TGT TGC TGC CGC TGC TGC
   105128  GCA * 15    41/45     GCA GCA GAA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCT TCT
   126991  TGT *  7    19/21     TGT TGA TGT CGT TGT TGT TGT
   136233  TGC * 11    31/33     TGC TCC TCC TGC TGC TGC TGC TGC TGC TGC TGC
   137614  ATC *  8    23/24     ATC ATC ATC ATC ATC ATC ATC GTC
   138537  GCA * 10    28/30     GCA ACA GCA GCA GCA GCA GCA GCA GCA ACA
   150530  TCA *  8    22/24     TCA TCG TCG TCA TCA TCA TCA TCA
   150779  CCA *  7    19/21     CCA CCT CCA CCT CCA CCA CCA
   166205  TCC *  8    22/24     TCC TCC TCA TAC TCC TCC TCC TCC
   195657  ATT *  7    19/21     ATT ATA ATT ATT ATT ATT ATA
   219634  CTG *  7    19/21     CTG TTG TTG CTG CTG CTG CTG
   219734  TGC * 12    33/36     TGC TGC AGC TGC TGT TGC TGC TGC TGC TGC TGC TGG
   221029  CTG *  7    19/21     CTG CTG ATG CTG CTG CTG GTG
   221338  CTG *  7    19/21     CTG TTG CTG CTG CTG CTG TTG
   221639  CCA *  7    19/21     CCA CCA CCG CCG CCA CCA CCA
   222518  TGC *  7    19/21     TGC TGC TGA TGC TGC TGC TGG
   222650  TTG *  8    22/24     TTG TTA TTA TTG TTG TTG TTG TTG
   223094  TGC *  9    25/27     TGC TGC TGC TGC TGC TGC TGT TGT TGC
   223419  GCT *  8    22/24     GCT GCT GCT GCT GTT GTT GCT GCT
   226249  GCT *  8    22/24     GCT GCT GCT GCT GCT GCT GCT GTC
   229616  GGA *  7    19/21     GGA GGA GCA GGA GCA GGA GGA
   229935  GAT *  7    19/21     GAT GAT GAT GGG GAT GAT GAT
   233251  CTG *  7    19/21     CTG CAA CTG CTG CTG CTG CTG
   236530  CAG *  8    22/24     CAG CAG CAG CAA CAG CAA CAG CAG
   247627  TGC *  7    19/21     TGC TGA TGC TGT TGC TGC TGC
   251506  CTG * 15    41/45     CTG CTG CTG CTG TTG GTG CTG CTG CTG CTG CTG TTG CTG CTG CTT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       280570 
 Total number of repeats detected..............       35 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      3       3       0       0       0       0       0       0       0       0       0       0       0   
  TGC      7       5       2       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      2       0       1       1       0       0       0       0       0       0       0       0       0   
  GCT      3       3       0       0       0       0       0       0       0       0       0       0       0   
  CAG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CTG      5       4       0       1       0       0       0       0       0       0       0       0       0   
  CGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   1 TAA +   1 ATT +   0 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   1 GTT +   1 TTG +    3 TGT      =    5 
   0 ATG +    0 TGA +   1 GAT +   0 CAT +   1 ATC +    1 TCA      =    3 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    1 GGA +   0 GAG +   0 CCT +   0 CTC +    1 TCC      =    2 
   1 AGC +    2 GCA +   2 CAG +   3 GCT +   5 CTG +    7 TGC      =   20 
   0 ACG +    1 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    2 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7294412|gb|AE003536.1|AE003536 Drosophila melanogaster genomic scaffold 142000013386050 section 23 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    36257  CCT * 11    30/33     CCT CCT CCT CCT CCT CCG CCG CCT CCT CCC CCT
    36702  TGT *  7    19/21     TGT TGT TGC TGT TGT TGT TGC
    59563  TAA *  7    19/21     TAA AAA TAA TAA TAA TAA TAT
    62472  GCA * 12    33/36     GCA GCA ACA ACA GCA GCA GCA GCA GCA GCA GCA ACA
    62508  ACA * 22    60/66     ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA GCA GCA GCA GCA GCA GCA
    64232  GCA *  7    20/21     GCA ACA GCA GCA GCA GCA GCA
    64415  ACA *  8    22/24     ACA GCA GCA ACA ACA ACA ACA ACA
    64439  GCA *  7    19/21     GCA GCA GCA GCA GCA ACA ACA
    64461  CAG *  7    19/21     CAG CAG CAG CAA CAA CAG CAG
    64737  CAA *  7    19/21     CAA CAA CAA CAA CCG CAA CAA
    65363  CAA *  8    22/24     CAA CAA CAG CAA CAA CAA CAA CAG
    65891  CAG *  7    19/21     CAG CCG CAG CAG CAG CAA CAG
    66942  CAG *  7    19/21     CAG CAA CAG CAG CAG CAG CAA
    77002  TGC * 10    28/30     TGC TGC TGC TGC TGC TTC TGC TGT TGC TGC
    79928  TTG *  8    22/24     TTG TTG TTG TTG TTG TTG TGG CTG
    81490  TGT *  7    19/21     TGT TGT TGT TGC TGC TGT TGT
    84842  ACA *  8    22/24     ACA ACA ACA ACA ACA ACA ACA TCC
    92539  TCC *  7    20/21     TCC TCC TCC TCC TCC TCC TCG
    96804  TCG *  7    19/21     TCG TCG TCG TTG TCG TCC TCG
   104368  CAG * 11    30/33     CAG GAG CAG CAG CAG CAG CAG CAG CAG AAG CAC
   107999  TGG * 16    45/48     TGG TGC TGG TGG TGG TGG TGG TGG TGG TGG TGC TGG TGG TGT TGG TGG
   116864  ACA *  8    22/24     ACA ACG ACC ACA ACA ACA ACA ACA
   124737  CAG * 10    27/30     CAG CAG CAG TAG CAG CAG CTG CAG CAG CAA
   132515  CAC * 16    44/48     CAC CAC CAC CAC CAT CAC CAC CAC CAC CAT CAC CAC CAC CAC CAC AAA
   149063  GCT *  7    19/21     GCT GCT GCT GCT GCT GCC GCC
   149092  TGT *  7    19/21     TGT TGT TGT TGT TGT TTT TGG
   164237  AAG *  7    19/21     AAG AAG AAG AAG AAG AAG AGC
   165073  ACA *  7    19/21     ACA ACA ACA ACA ACA ACA GTA
   175884  CAG * 11    30/33     CAG CAG CGG CAG CAG CAG CAG CAG CAG CAG GAT
   202955  GCG *  7    19/21     GCG GCA GCA GCG GCG GCG GCG
   206063  ACA *  7    19/21     ACA ACA ACA ACA ACA GCA GCA
   211362  CTG *  7    20/21     CTG CTG CGG CTG CTG CTG CTG
   217767  CAG *  7    19/21     CAG CAG CAG CAG CAG CAA CAA
   243169  ACC *  7    19/21     ACC ACC ACC TCC ACC TCC ACC
   278933  ACA *  7    19/21     ACA GCA GCA ACA ACA ACA ACA
   279020  AAC *  7    19/21     AAC AAC AAC AAC AAC AGC GAC
   284581  TCA *  7    19/21     TCA TCG TCA TCG TCA TCA TCA
   294177  TTG *  8    22/24     TTG ATG TTG TTG TTG TTG ATG TTG
   309977  GAT * 10    27/30     GAT GAT GAT GAT GAT GAT GAT GAT GCT GGC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       341639 
 Total number of repeats detected..............       39 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      7       6       0       0       0       0       1       0       0       0       0       0       0   
  ACC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGT      3       3       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       0       0       0       1       0       0       0       0       0       0       0       0   
  TGC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GCA      3       2       1       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAG      7       4       3       0       0       0       0       0       0       0       0       0       0   
  CAC      1       0       0       0       1       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCT      1       0       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   1 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   1 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    1 
   1 AAC +    7 ACA +   2 CAA +   0 GTT +   2 TTG +    3 TGT      =   15 
   0 ATG +    0 TGA +   1 GAT +   0 CAT +   0 ATC +    1 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   1 CCT +   0 CTC +    1 TCC      =    2 
   0 AGC +    3 GCA +   7 CAG +   1 GCT +   1 CTG +    1 TGC      =   13 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    1 TCG      =    1 
   1 ACC +    0 CCA +   1 CAC +   0 GGT +   0 GTG +    1 TGG      =    3 
   0 GGC +    1 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7294397|gb|AE003535.1|AE003535 Drosophila melanogaster genomic scaffold 142000013386050 section 22 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     7652  ATA *  7    19/21     ATA ATA ATA TTA AGA ATA ATA
    17508  TCA *  7    19/21     TCA TCA TCA TCA TCT TCA TCT
    42602  TAA *  7    19/21     TAA TAA AAA TAA TAA TAA TAT
    46872  TGC *  7    19/21     TGC TGT TGC TGT TGC TGC TGC
    47152  TGC *  7    19/21     TGC TGC TTT TGC TGC TGC TGC
   143144  TTG *  8    22/24     TTG CTA TTG TTG TTG TTG TTG TTG
   145012  CAA * 11    30/33     CAA CAA CAA CAA CAA TAA CAA CAA CAA CAA CTT
   173812  GGA *  7    19/21     GGA GGA GGA GGA GGG GGC GGA
   192501  GGC *  7    19/21     GGC AGC GGC GGC GGC GGC GGT
   218506  GAA *  7    19/21     GAA GAA GAA GAA ACA GAA GAA
   231645  TCA *  8    22/24     TCA TCA TCA TCA TCA TCA TCA AAA
   243010  GCA *  8    22/24     GCA TCA GCA GCA ACA GCA GCA GCA
   243125  CAG *  7    19/21     CAG CAT CAG CAG CAG CAT CAG
   246539  CAA *  7    20/21     CAA CAA CAA CAA CAA CGA CAA
   255574  CAG * 17    46/51     CAG CAG CAA CAG CAG CAG CAG CAG CAA CAG CAG CAG CAG CAG CAA CAG TTG
   264158  GGT *  7    19/21     GGT GGT GGT GGT GGC GGC GGT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       278748 
 Total number of repeats detected..............       16 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CAG      2       1       0       0       1       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    1 ATA +   1 TAA +   0 ATT +   0 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   1 GAA +   0 CTT +   0 TTC +    0 TCT      =    1 
   0 AAC +    0 ACA +   2 CAA +   0 GTT +   1 TTG +    0 TGT      =    3 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    2 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    1 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   0 AGC +    1 GCA +   2 CAG +   0 GCT +   0 CTG +    2 TGC      =    5 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   1 GGT +   0 GTG +    0 TGG      =    1 
   1 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7294375|gb|AE003534.1|AE003534 Drosophila melanogaster genomic scaffold 142000013386050 section 21 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    47025  ATA *  7    19/21     ATA ACC ATA ATA ATA ATA ATA
    50778  AAT *  7    20/21     AAT AAT AAT AAT AAC AAT AAT
    54083  GCT *  8    22/24     GCT ACT GCT GCT GCT GCT GCT GTT
    64529  TGC *  8    23/24     TGC TGC TGC TGC TGC TGC CGC TGC
    94519  ATA *  9    25/27     ATA ATA ATA ATA ATA ATA ATA ATA TAA
   164840  TGC * 10    27/30     TGC TGC TGC TGC TGC TGC TGC TGC TAC CAC
   174889  GAC *  7    19/21     GAC GAC AAC GTC GAC GAC GAC
   226376  CAA *  7    19/21     CAA CAG CAA TAA CAA CAA CAA
   262338  ATA *  7    19/21     ATA AGA ATA ATA ATA ATA ATT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       280061 
 Total number of repeats detected..............       9 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATA      3       3       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    3 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    4 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   1 CAA +   0 GTT +   0 TTG +    0 TGT      =    1 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    0 GCA +   0 CAG +   1 GCT +   0 CTG +    2 TGC      =    3 
   0 ACG +    0 CGA +   1 GAC +   0 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7294349|gb|AE003533.1|AE003533 Drosophila melanogaster genomic scaffold 142000013386050 section 20 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     6862  CAA * 10    27/30     CAA CAA CGA CAA CAG CAA CAA CAA CAA GAA
    29169  GCA *  8    22/24     GCA GCA GCA GTA GCA GCA GCA GTA
    40215  TGT *  7    19/21     TGT TGC TGT TGT TGT TAT TGT
    40424  TGC * 15    41/45     TGC TGC TGC TGT TGC TGC TGC TGT TGC TGC TGC TGC TGA TGT TGC
    46159  TGC *  9    25/27     TGC TGC TGC TGC TGC TGC TTG TGC TGC
    46189  TGC *  8    22/24     TGC TGC TGT TGC TGC TGC TGT TGC
    49468  CAG * 10    27/30     CAG CAG CAG CAA CAG CAG CAG TAG CAG CAA
    52386  GAT *  7    19/21     GAT GAT GAT GAT GAT GGT GCT
    63167  AAT * 11    31/33     AAT AAT AAT AAT AAG AAT AAT AAT AAT AAC AAT
   115326  ACT *  8    22/24     ACT GCT ACT ACT ACT ACT ACA ACT
   118197  TCG *  7    20/21     TCG TCG TCG TCG TCG TCG GCG
   125535  TGC * 12    33/36     TGC TGC TGC TGC TGT TGT TGC TGC TGC TGC TGC TGG
   125764  GCT *  7    19/21     GCT GCT GCT GCT GTT GCT GTT
   130836  CTG *  8    22/24     CTG CTG CTG TTG TTG CTG CTG CTG
   170672  CAG *  7    19/21     CAG CAG CAG CAA CAG CAG CAA
   170695  GCA *  7    19/21     GCA GCA GCA ACA CCA GCA GCA
   172170  CAG * 11    30/33     CAG CAA CAG CAG CAG CAG CAG CAG CAG CAA CAA
   172290  CAG *  8    22/24     CAG CAG CAA CAG CAG CAG CAG CAA
   172568  GCA *  8    22/24     GCA GCA GCA ACA ACA GCA GCA GCA
   172592  ACA *  8    22/24     ACA ACA GCA GCA ACA ACA ACA ACA
   174158  GGA * 11    30/33     GGA GGA GGA GGA GGA GGA GGA GAA GGT GGA GGC
   174281  AGC *  8    22/24     AGC AGC AGC AGC AAC AGC AGA AGC
   174524  GCA *  7    19/21     GCA GCA GCA GCG GCG GCA GCA
   174863  CAG *  8    22/24     CAG CAG CAG CAG CAG CAG CAA CAT
   184204  TGC *  8    22/24     TGC AGC TGC TGA TGC TGC TGC TGC
   190109  TAA *  7    20/21     TAA TAA TAA TAA TAA TAA TAT
   204644  GCT *  8    23/24     GCT GCC GCT GCT GCT GCT GCT GCT
   230300  ATG *  8    22/24     ATG ATG ATG ATA ATG ATG ATG AGG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       275076 
 Total number of repeats detected..............       28 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      5       3       1       1       0       0       0       0       0       0       0       0       0   
  TCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GCA      4       4       0       0       0       0       0       0       0       0       0       0       0   
  GCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CAG      5       3       2       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   1 TAA +   0 ATT +   0 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    1 ACA +   1 CAA +   0 GTT +   0 TTG +    1 TGT      =    3 
   1 ATG +    0 TGA +   1 GAT +   0 CAT +   0 ATC +    0 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   1 ACT +   0 CTA +    0 TAC      =    1 
   0 AGG +    1 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   1 AGC +    4 GCA +   5 CAG +   2 GCT +   1 CTG +    5 TGC      =   18 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    1 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7294302|gb|AE003532.1|AE003532 Drosophila melanogaster genomic scaffold 142000013386050 section 19 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

      149  TGC *  8    22/24     TGC TGC TGC TGC TGG TGG TGC TGC
     5609  TTG * 17    48/51     TTG GTG TTG TTG TTG TTG TTA TTG TTG TTG TTG TTA TTG TTG TTG TTG TTG
    38700  AAT *  7    19/21     AAT AAT AAT AAT GAT ATT AAT
    66079  TGC *  7    19/21     TGC TGG TGC TGC TGC TGC TGT
   111772  GCT *  7    20/21     GCT GCT TCT GCT GCT GCT GCT
   115688  CAG *  7    19/21     CAG CGG CAG CAG CAG CAA CAG
   122192  TGG *  7    19/21     TGG TGG AGG TGG TGG TGG TGC
   143447  TTA * 10    28/30     TTA TTA TTG TTA TTA TTA TTA TTA TTA TTT
   173951  CAG * 12    33/36     CAG CAG CAG CAG CAA CAA CAG CAG CAG CAG CAA CAG
   173999  GCA *  8    22/24     GCA GCA GCG GCC GCA GCA GCA GCA
   201664  AAT *  7    21/21     AAT AAT AAT AAT AAT AAT AAT
   234378  CTC *  7    19/21     CTC CTC CTC GTC CTC CTC TTC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       295377 
 Total number of repeats detected..............       12 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TTG      1       0       0       0       1       0       0       0       0       0       0       0       0   
  TGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   2 AAT +    0 ATA +   0 TAA +   0 ATT +   1 TTA +    0 TAT      =    3 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   1 TTG +    0 TGT      =    1 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   1 CTC +    0 TCC      =    1 
   0 AGC +    1 GCA +   2 CAG +   1 GCT +   0 CTG +    2 TGC      =    6 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    1 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7294291|gb|AE003531.1|AE003531 Drosophila melanogaster genomic scaffold 142000013386050 section 18 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     5246  GCA *  7    19/21     GCA GCA GCA GTG GCA GCA GCA
     9651  TGC *  7    19/21     TGC AGA TGC TGC TGC TGC TGC
    49807  GCA *  8    22/24     GCA GCA GGA GCA GCA GCA GCA GGA
   110851  GAT *  8    22/24     GAT GAT GAT GAT AAT GAT AAT GAT
   121923  AAC *  7    19/21     AAC AGC AAC AAC AAT AAC AAC
   128706  ATG *  8    22/24     ATG ACG ATA ATG ATG ATG ATG ATG
   147575  GCT *  7    19/21     GCT GTT GTT GCT GCT GCT GCT
   151927  GCT *  7    19/21     GCT GCT GCT GCT GGT GGT GCT
   226666  ACG *  8    22/24     ACG ATG ATG ACG ACG ACG ACG ACG
   233577  TGT * 14    38/42     TGT CGT TGT TGT TGT TGT TGT TGT TGT GGA TGT TGT TGT TGC
   245605  GAT *  7    19/21     GAT GGT GAT GAT GAT GAT GAC
   251815  CTG *  7    20/21     CTG CTG TTG CTG CTG CTG CTG
   251861  TGC *  7    19/21     TGC TGC TGT TGC TGC TGC TGT
   261814  CAG * 11    30/33     CAG CAA CAA CAG CAG CAG CAG CAG CAG CAG AAG
   264852  TGC *  7    20/21     TGC TGT TGC TGC TGC TGC TGC
   264990  GCA *  7    19/21     GCA GCA GCA GCA GCA ACA ACA
   265012  CAG *  8    22/24     CAG CAG CAG CAG CAA CTG CAG CAG
   265036  CAA *  7    19/21     CAA CAG CAA CAA CAA CAA CAT
   266519  TGT *  8    22/24     TGT TGT TGT TGT TGT TGT TGC TGC
   268174  AGG *  7    19/21     AGG AGA AGG AGA AGG AGG AGG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       274277 
 Total number of repeats detected..............       20 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      2       1       0       1       0       0       0       0       0       0       0       0       0   
  TGC      3       3       0       0       0       0       0       0       0       0       0       0       0   
  GAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCA      3       3       0       0       0       0       0       0       0       0       0       0       0   
  GCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    0 ACA +   1 CAA +   0 GTT +   0 TTG +    2 TGT      =    4 
   1 ATG +    0 TGA +   2 GAT +   0 CAT +   0 ATC +    0 TCA      =    3 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   1 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   0 AGC +    3 GCA +   2 CAG +   2 GCT +   1 CTG +    3 TGC      =   11 
   1 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7294232|gb|AE003530.1|AE003530 Drosophila melanogaster genomic scaffold 142000013386050 section 17 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    12009  TGT *  7    19/21     TGT TTT TTT TGT TGT TGT TGT
    14380  CTG *  7    19/21     CTG CTG CTT CTA CTG CTG CTG
    57192  CAT *  8    23/24     CAT CAT CAT CAT CAT CAT CAG CAT
    70234  CAG *  7    19/21     CAG CAA CAA CAG CAG CAG CAG
    71642  ATT *  7    19/21     ATT ATT ATT ATT ATC GTT ATT
   144080  GCA *  7    19/21     GCA GGA GCA GCA GCA GCA GCT
   163113  TGC *  7    19/21     TGC TGC TGC TGC TGT TGA TGC
   163182  TGC * 12    33/36     TGC TGT TGC TGC TCC TGC TGC TGC TGC TGC TGA TGC
   163280  CTG *  9    25/27     CTG CTG TTG CTG TTG CTG CTG CTG CTG
   166282  TCG *  7    19/21     TCG TCG TCG TCC TCG TCG TAG
   166326  CTG *  8    22/24     CTG CTG CTG CTG CTG CTG TTG TTG
   216325  ATT *  7    19/21     ATT ATT ATT ATT ATT TTT TTT
   229844  GCA *  7    19/21     GCA GCA GCA GCA GCA GCA GGC
   234092  TGC *  7    19/21     TGC TGC TGC TGC TGT CGC TGC
   256118  GAA *  7    21/21     GAA GAA GAA GAA GAA GAA GAA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       279136 
 Total number of repeats detected..............       15 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      3       2       1       0       0       0       0       0       0       0       0       0       0   
  TCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      3       3       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   2 ATT +   0 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   1 GAA +   0 CTT +   0 TTC +    0 TCT      =    1 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    1 TGT      =    1 
   0 ATG +    0 TGA +   0 GAT +   1 CAT +   0 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    2 GCA +   1 CAG +   0 GCT +   3 CTG +    3 TGC      =    9 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    1 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7294198|gb|AE003529.1|AE003529 Drosophila melanogaster genomic scaffold 142000013386050 section 16 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

      566  TGC *  8    22/24     TGC TGC TGC TGC TGC TGC TGC GGT
      769  GCA * 12    33/36     GCA GCA GCA ACA TCA GCA GCA GCA GCA GCA GCG GCA
     1552  TGC *  7    19/21     TGC TGC TGC CGC TGC TGC CGC
     1584  TTG *  7    19/21     TTG TTG CAG TTG TTG TTG TTG
     7411  CAC *  7    19/21     CAC CAA CAC CAC CAT CAC CAC
     8912  GTG * 10    27/30     GTG GTG GTG GTG GTG GTG GTG GAG GAG GAG
    70873  TAA *  7    19/21     TAA TAA CAA TAA TAA TAA AAA
    73337  CAC *  8    22/24     CAC CGC CAC CAC CAC CAC CAC CAG
    83247  AGC *  7    19/21     AGC AGC AAC AAC AGC AGC AGC
    83303  CAG *  7    19/21     CAG CAG CAA CAG CAG CAG CAA
   122068  CAA *  8    23/24     CAA CAA TAA CAA CAA CAA CAA CAA
   126800  ACA *  8    22/24     ACA ACA ACA ACA ACA ACC ATA ACA
   175551  TTG *  7    19/21     TTG TTG TTG CTG CTG TTG TTG
   179462  AAT *  7    20/21     AAT AAT AAT AAT AAT AAT AAG
   198531  AGC *  7    19/21     AGC AGC AGC AAC AAC AGC AGC
   198880  GCA *  7    19/21     GCA GCA GCC GCA GCA GCA CCA
   198923  CAG *  8    22/24     CAG CAA CAA CAG CAG CAG CAG CAG
   210778  CAT *  8    22/24     CAT CGT CAT CAT CAT CAT CAT CCT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       252224 
 Total number of repeats detected..............       18 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GTG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GCA      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAC      2       2       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   1 TAA +   0 ATT +   0 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    1 ACA +   1 CAA +   0 GTT +   2 TTG +    0 TGT      =    4 
   0 ATG +    0 TGA +   0 GAT +   1 CAT +   0 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   2 AGC +    2 GCA +   2 CAG +   0 GCT +   0 CTG +    2 TGC      =    8 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   2 CAC +   0 GGT +   1 GTG +    0 TGG      =    3 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7294145|gb|AE003528.1|AE003528 Drosophila melanogaster genomic scaffold 142000013386050 section 15 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    13203  CTC *  7    19/21     CTC CTC CTC CAC CTA CTC CTC
    43833  TAA *  7    20/21     TAA TAA TAA TAA TAA TAA TAC
    47983  CAG *  7    19/21     CAG CAG CAG CAG CAG CTC CAG
    81680  TGT *  8    22/24     TGT TGT TGT TGT TGT TGG TTT TGT
    82412  GTT *  8    22/24     GTT GTT GCT GTT GCT GTT GTT GTT
    88917  CGA *  7    19/21     CGA CTA CGA CGA CGA AGA CGA
    90853  GCA *  7    19/21     GCA GCA GCA GCA AGA GCA GCA
    91845  TTG *  7    19/21     TTG TTG TTG TTG TTC TTG TTC
    92457  GTT *  7    19/21     GTT GTT GTT ATT GTT GTC GTT
    93283  TCA *  7    19/21     TCA TCA TCA TCA TCA TCA TTG
    96955  TGA * 14    38/42     TGA TGA TGA TGA TGA TGA TGA TGA TGA TGC TGA TGG TGA TAC
    99179  TGC *  8    22/24     TGC AGC TGC TGC TGC TGC CGC TGC
    99417  CGC *  7    20/21     CGC CGC CGC CGC CGC CGT CGC
   100055  CGT *  8    22/24     CGT TGT CGT CGT CAT CGT CGT CGT
   112180  GTT *  7    20/21     GTT GTT GTT GTT GTT GTT GTA
   115058  GGA * 11    30/33     GGA GGA GGA GGA GGA GAA GGA GCA GGA GGA GCA
   124433  CAT *  7    19/21     CAT CAT CAT CAA CTT CAT CAT
   125347  CAA *  7    19/21     CAA CGA CAA CAA CAA CAG CAA
   128777  CAG *  7    19/21     CAG CAA CTG CAG CAG CAG CAG
   130083  CGT *  9    25/27     CGT CGT CGT CGT AGT CGT CGT CGC CGT
   130132  GCA *  7    19/21     GCA AGA GCA GCA GCA GCA GCA
   151171  GCT * 13    36/39     GCT GAT GAT GCT GCT GCT GCT GCT GCT GCT GCT GCT GAT
   155427  AGC *  7    19/21     AGC GGC AGC ATC AGC AGC AGC
   155466  AGC *  7    19/21     AGC TGG AGC AGC AGC AGC AGC
   155774  CAG *  7    19/21     CAG CAG CAG CAG CCG CAA CAG
   162633  GCA *  7    19/21     GCA ACA GCA GCA GCA GCA ACA
   187658  GCT *  7    19/21     GCT TCT GCT GCT GCT GTT GCT
   187706  TGG * 11    31/33     TGG TAG TGG TGG TGG TGG TGG TGT TGG TGG TGG
   187888  TGT *  7    19/21     TGT TGT TGT TGT TGT TGG TAT
   223558  CAA *  7    19/21     CAA CAA CAA CAG AAA CAA CAA
   228308  TGA *  8    22/24     TGA TGC TGA TGA AGA TGA TGA TGA
   236581  AAT *  7    19/21     AAT AAT AAT AAT AAT AAT CAA
   237368  TTG *  7    20/21     TTG TTG TTA TTG TTG TTG TTG
   238782  TGC * 10    27/30     TGC TGC CGA TGC TGC TGC TGC TGC TGC TGG
   238872  TGT *  8    22/24     TGT TGT TGT TGT TGT TGT TGT GGG
   238948  TTG *  7    19/21     TTG TTG TTG TTA TTG TTG TTA
   240522  CAT *  8    22/24     CAT CAT CAT GAC CAT CAT CAT CAT
   245945  ATA *  7    19/21     ATA ATA ATT ATA ATA ATT ATA
   251119  CTG *  7    19/21     CTG CTG CTG CTG CTG CTT CTT
   275790  AAC *  7    19/21     AAC AAC AAC AGC AAC AGC AAC
   277905  TTG *  7    19/21     TTG TTA TTA TTG TTG TTG TTG
   282025  CAG *  8    22/24     CAG CAG CAG CAG CAG CAG TTG CAG
   283007  GAT * 22    60/66     GAT GAT GAC GGT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAG GAT GAT GAC GAT GAC GAT GAC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       283712 
 Total number of repeats detected..............       43 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      4       4       0       0       0       0       0       0       0       0       0       0       0   
  TGA      2       1       0       1       0       0       0       0       0       0       0       0       0   
  TGT      3       3       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGC      2       1       1       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       0       0       0       0       0       1       0       0       0       0       0       0   
  GTT      3       3       0       0       0       0       0       0       0       0       0       0       0   
  GGA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GCA      3       3       0       0       0       0       0       0       0       0       0       0       0   
  GCT      2       1       0       1       0       0       0       0       0       0       0       0       0   
  CAA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAG      4       4       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CGT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    1 ATA +   1 TAA +   0 ATT +   0 TTA +    0 TAT      =    3 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    0 ACA +   2 CAA +   3 GTT +   4 TTG +    3 TGT      =   13 
   0 ATG +    2 TGA +   1 GAT +   2 CAT +   0 ATC +    1 TCA      =    6 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    1 GGA +   0 GAG +   0 CCT +   1 CTC +    0 TCC      =    2 
   2 AGC +    3 GCA +   4 CAG +   2 GCT +   1 CTG +    2 TGC      =   14 
   0 ACG +    1 CGA +   0 GAC +   2 CGT +   0 GTC +    0 TCG      =    3 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    1 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    1 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7294090|gb|AE003527.1|AE003527 Drosophila melanogaster genomic scaffold 142000013386050 section 14 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    38227  ATA *  7    20/21     ATA ATA ATA ATA ATA ATA ATC
    58558  TGT *  7    19/21     TGT TGG TGT TGT TGT TGT TGG
    65496  TGA *  7    19/21     TGA TGA TGA TGA TGA CGT TGA
    95409  AAC * 10    27/30     AAC AAC AAC AAC AAC AAC CAC AAC AAT AAA
    97643  TGC * 11    30/33     TGC TGC TGC TGA TGT TGC TGC TGC TGC TGT TGC
   103654  CAA *  7    19/21     CAA CAA CAA TAA CAA CAA GAA
   106642  GCA *  7    19/21     GCA GCA ACA GCA ACA GCA GCA
   128274  GCA *  8    22/24     GCA TCA GCA GCA GCA GCA GCA ACA
   128931  GCA * 10    27/30     GCA GCA GCA GCA GCA GCA GCA GCG GTA TCA
   129200  AGC * 11    30/33     AGC AGC AGC AAC AGC AAC AGC AGC AGC AAC AGC
   129832  GCA * 11    30/33     GCA ACA GCA GCA GCA GCA GCA GCA GCA GCA CCC
   133608  GCA *  8    22/24     GCA GCA GCA GCA GCA GCA GCA ACC
   140810  AGG *  7    19/21     AGG AGG AGG AGG TGG AGG AGA
   143894  CAG *  7    19/21     CAG CAG CAG CGG CAG CGG CAG
   145940  ATC *  7    21/21     ATC ATC ATC ATC ATC ATC ATC
   146548  ATG *  8    22/24     ATG ATG ATG ATG ATG ATG ACG ACG
   148316  AGA * 12    33/36     AGA AGA AGA AGA AGA AGA AGA ATA AGA AGA TCA AGA
   173735  AGC *  7    20/21     AGC AGG AGC AGC AGC AGC AGC
   174679  ACA *  7    19/21     ACA GCA GCA ACA ACA ACA ACA
   248117  TGC *  9    25/27     TGC TTT TGC TGC TGC TGC TGC TGC TGC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       279679 
 Total number of repeats detected..............       20 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  ATA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  AGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      2       1       1       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GCA      5       3       2       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    1 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    1 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    1 
   1 AAC +    1 ACA +   1 CAA +   0 GTT +   0 TTG +    1 TGT      =    4 
   1 ATG +    1 TGA +   0 GAT +   0 CAT +   1 ATC +    0 TCA      =    3 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   1 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   2 AGC +    5 GCA +   1 CAG +   0 GCT +   0 CTG +    2 TGC      =   10 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7294043|gb|AE003526.1|AE003526 Drosophila melanogaster genomic scaffold 142000013386050 section 13 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    13289  TGC *  7    19/21     TGC TGC TGA TGC TGC TGC TGT
    13430  TGC *  7    19/21     TGC TGT TGC TGT TGC TGC TGC
    32576  TGC *  7    19/21     TGC TGC TGC TGC TAC TAC TGC
    55208  ATT *  7    19/21     ATT ATT ATT AAT TTT ATT ATT
    76979  ATG * 10    28/30     ATG ATG ATG ATG ATG ATG ATG ATG ATG CGG
    95720  CTC *  7    19/21     CTC CTC CTC CTC CTT CTC CTG
   155044  TTG *  7    19/21     TTG TTG TTG TTG TAG TTC TTG
   156202  TTC *  8    22/24     TTC TTC TTC TTC ATC TTC TTC TCC
   163523  AAC *  7    19/21     AAC AAC AAC AAC AAC AAC ATT
   170710  CAC *  7    19/21     CAC CAA CAC CAC CAC CCC CAC
   172301  CTG * 13    36/39     CTG CGA CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTC
   180734  TTG *  7    19/21     TTG TTG TTG TTG CTG TTG TGG
   180906  CAG *  7    19/21     CAG CAA CAG TAG CAG CAG CAG
   180940  AGC *  8    22/24     AGC AGC AGC AGC AGC AGC AGC AAT
   184756  CAG *  7    19/21     CAG CAG CAA CTG CAG CAG CAG
   184984  CAA *  7    19/21     CAA CAG CAA CAA CAA CAA CAG
   185974  CAG *  7    19/21     CAG CAG CAG AAG CAC CAG CAG
   237122  GAC *  8    22/24     GAC TAC GAC GGC GAC GAC GAC GAC
   238115  ACA *  7    20/21     ACA ACA ACA ACA ACA GCA ACA
   239432  GGA *  7    19/21     GGA GGA GGA GGA GGA GGA ATA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       280887 
 Total number of repeats detected..............       20 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      3       3       0       0       0       0       0       0       0       0       0       0       0   
  GAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      3       3       0       0       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       0       0       1       0       0       0       0       0       0       0       0       0   
  CTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   1 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   1 TTC +    0 TCT      =    1 
   1 AAC +    1 ACA +   1 CAA +   0 GTT +   2 TTG +    0 TGT      =    5 
   1 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    1 GGA +   0 GAG +   0 CCT +   1 CTC +    0 TCC      =    2 
   1 AGC +    0 GCA +   3 CAG +   0 GCT +   1 CTG +    3 TGC      =    8 
   0 ACG +    0 CGA +   1 GAC +   0 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   1 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7294009|gb|AE003525.1|AE003525 Drosophila melanogaster genomic scaffold 142000013386050 section 12 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    11296  CGC *  7    19/21     CGC CGC CGC CGC CGC CGC AGT
    18512  CAG *  7    19/21     CAG CAA CAG TAG CAG CAG CAG
    19760  CAG * 10    27/30     CAG CAG CAG CAG CAG CAG AAA CAG CAG AAG
    32588  CTG *  9    25/27     CTG ATG CAG CTG CTG CTG CTG CTG CTG
    35216  CAG *  9    25/27     CAG CAG CTG CAG CAG CAG CAA CAG CAG
    47777  CTG * 13    36/39     CTG CTG CTT CTG CTG CTG CTG CTG CTG CTG CTG TTG CTC
    53076  GCT *  7    20/21     GCT GCT GCT GCT GCT GCT GAT
    55494  TCT *  7    19/21     TCT TGT TCT TCT TCT GCT TCT
    80890  GCA * 12    33/36     GCA ACA GCA GCA GCA GCA ACA GCA GCA GCA GCA ACA
    80930  CAG *  7    19/21     CAG CAG CAG CAG CAA CAG CAC
    81122  CAG * 12    33/36     CAG CAG CAG CAG CAG CAA CAG CAG CAG CAG CAA CAA
    81176  CAG *  8    22/24     CAG CAG CAG CAT CAG CAA CAG CAG
    92763  ACA *  8    22/24     ACA ACA GCA ACA ACA ACA GCA ACA
    92787  GCA *  8    22/24     GCA GCA ACA GCA GCA GCA GCA ACA
    93212  ACA *  7    20/21     ACA ACA ACA AAA ACA ACA ACA
    93667  ATT *  7    19/21     ATT ATT ATT ACC ATT ATT ATT
   120097  GCA *  7    20/21     GCA GCA GCA GCA GCA GCA ACA
   146612  CAA *  7    19/21     CAA CAA CAA CAG CAA CAA CCA
   155573  TTA *  8    22/24     TTA TTA TTA TTA TTA TTA TTT TTT
   177594  TGC *  7    20/21     TGC TGC TGC GGC TGC TGC TGC
   182137  TGC * 11    30/33     TGC TGC TGC CGC TGC TGC TGC TGC TGC TAT TGC
   196939  GTG *  8    22/24     GTG GTG GTG GTG TTG GTG GTG GTA
   203163  TAT *  8    23/24     TAT TAT TAT TAT TAT TAT TAT TTT
   235138  TCA *  8    23/24     TCA TCA TCA TTA TCA TCA TCA TCA
   247852  AAC * 10    27/30     AAC AAC AAC AAC AAC AAC AAC AAC TGC AAT
   250858  CTT *  8    22/24     CTT CTT CTT GCT CTT CTT CTT CTT
   265406  TAA *  7    21/21     TAA TAA TAA TAA TAA TAA TAA
   277975  TGG *  9    25/27     TGG TGG TGG CGT TGG TGG TGG TGG TGG
   278263  GCT *  8    22/24     GCT GGT GCT GGT GCT GCT GCT GCT
   290993  TGT *  7    19/21     TGT GGT TGT TGT TGT TGT TGC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       291880 
 Total number of repeats detected..............       30 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  ATT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       1       1       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      3       2       1       0       0       0       0       0       0       0       0       0       0   
  GCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      6       4       2       0       0       0       0       0       0       0       0       0       0   
  CTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      2       1       0       1       0       0       0       0       0       0       0       0       0   
  CGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   1 TAA +   1 ATT +   1 TTA +    1 TAT      =    4 
   0 AAG +    0 AGA +   0 GAA +   1 CTT +   0 TTC +    1 TCT      =    2 
   1 AAC +    2 ACA +   1 CAA +   0 GTT +   0 TTG +    1 TGT      =    5 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    1 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    3 GCA +   6 CAG +   2 GCT +   2 CTG +    2 TGC      =   15 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   1 GTG +    1 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    1 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7293975|gb|AE003524.1|AE003524 Drosophila melanogaster genomic scaffold 142000013386050 section 11 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     7111  TTG *  8    23/24     TTG TTG TTG GTG TTG TTG TTG TTG
    46729  GTT *  7    19/21     GTT GTA GTT GTA GTT GTT GTT
    63977  GAT *  7    19/21     GAT GAT GAT GAT GAT AAT AAT
    69824  GAG *  7    19/21     GAG GAG GAC GAA GAG GAG GAG
   112032  CAG *  7    19/21     CAG CAG CAC CAG CAG CAG CAA
   113750  GCA *  7    19/21     GCA ACA ACA GCA GCA GCA GCA
   134445  CGT *  7    19/21     CGT CGT CGT CGT CCT CGT CGA
   148614  CAG *  7    19/21     CAG CAG CAG CAG CAA CAG CCG
   170642  CTT *  7    19/21     CTT CTT CTT CTT CTT CTT TTC
   170666  CTT *  8    22/24     CTT GTA CTT CTT CTT CTT CTT CTT
   195773  GAT *  7    19/21     GAT GCC GAT GAT GAT GAT GAT
   241361  CAG *  7    19/21     CAG CAG CAG AAA CAG CAG CAG
   258872  AGC *  7    20/21     AGC AGC AGC AGC AGC AAC AGC
   276238  TTA * 10    27/30     TTA TTA TTA TTA TTA TTA TTA TTT TTG TTT
   279431  TAT * 10    29/30     TAT AAT TAT TAT TAT TAT TAT TAT TAT TAT
   307456  TTA *  8    22/24     TTA TTA TTA TTA TTA TTA TTA TCG
   318801  GGT *  8    22/24     GGT GGT GCT GGT GGT GGT GGT GTT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       335868 
 Total number of repeats detected..............       17 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TTA      2       1       1       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      3       3       0       0       0       0       0       0       0       0       0       0       0   
  CTT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   2 TTA +    1 TAT      =    3 
   0 AAG +    0 AGA +   0 GAA +   2 CTT +   0 TTC +    0 TCT      =    2 
   0 AAC +    0 ACA +   0 CAA +   1 GTT +   1 TTG +    0 TGT      =    2 
   0 ATG +    0 TGA +   2 GAT +   0 CAT +   0 ATC +    0 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   1 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   1 AGC +    1 GCA +   3 CAG +   0 GCT +   0 CTG +    0 TGC      =    5 
   0 ACG +    0 CGA +   0 GAC +   1 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   1 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7293946|gb|AE003523.1|AE003523 Drosophila melanogaster genomic scaffold 142000013386050 section 10 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    38909  ATC * 13    36/39     ATC ATC CCC ATC ATC ATC ATC ATC ATC ATC TTC ATC ATC
    39517  ATA * 18    50/54     ATA ATA ACA ATA ATA ATA ACA ATA ATA ATA ATA ATA TTA ATA ATA ATT ATA ATA
    46366  ATA * 18    50/54     ATA ATA ACA ATA ATA ATA ACA ATA ATA ATA ATA ATA TTA ATA ATA ATT ATA ATA
   113844  CAG *  8    22/24     CAG CAG CAA CAC CAG CAG CAG CAG
   114200  GCA *  8    22/24     GCA ACA GCA GCA GCA GCA GCA CCA
   114456  CAG *  8    22/24     CAG CAG CAA CAG CAG CAG CAA CAG
   135457  TTG *  7    19/21     TTG CTG TTG TTG TTG TTG CTG
   135488  TGT *  7    19/21     TGT CGT TGT GGT TGT TGT TGT
   161810  TGG *  8    22/24     TGG GGG TGG TGG TGG TGG TGA TGG
   163728  CAA *  8    22/24     CAA CAA CAA CAA CAA CAA CAA CTT
   165776  GAT *  8    22/24     GAT GAT GAT GAT GAT GAC GAT GGT
   165846  TGC *  7    19/21     TGC TGC TGC TGC TTC AGC TGC
   175231  ATT *  7    19/21     ATT ATA ATT GTT ATT ATT ATT
   176083  CAA *  7    19/21     CAA AAG CAA CAA CAA CAA CAA
   177146  TGT *  7    20/21     TGT TGT TGT TGT TGT TGT TGG
   177315  GTT *  7    20/21     GTT GCT GTT GTT GTT GTT GTT
   179983  CAA * 14    39/42     CAA CAA CAA CAA CAA CAA CAG CAA CAG CAA CAA CAA CAG CAA
   181260  TCG *  7    19/21     TCG TCG TTG TCG ACG TCG TCG
   184176  CAA * 12    33/36     CAA CAA CAA CGA CAA CAA CAA CAA CAA CAG CAA CGA
   184620  TAT *  7    19/21     TAT TAT TAT TAC TAT TAC TAT
   186591  AGC *  8    22/24     AGC AGC GGC AGC AGC AGC AGC AAC
   202557  GCA *  7    19/21     GCA GCC GCA GCA GCA CCA GCA
   204064  GCT *  7    19/21     GCT GCT GCT GCT GTT GCT GCC
   208726  TGC * 10    27/30     TGC TGC TGC TGC TGC TGC TGA TGG TGC TGG
   212017  GCA *  8    22/24     GCA GCA GCA ACT GCA GCA GCA GCA
   212047  GCA *  7    19/21     GCA ACA GCA GCA ACA GCA GCA
   212155  GCA *  8    22/24     GCA GCA GCA GCA ACA ACA GCA GCA
   212973  GCG *  7    19/21     GCG GCA GCA GCG GCG GCG GCG
   213794  CAG *  7    20/21     CAG CAA CAG CAG CAG CAG CAG
   215113  GCA *  9    25/27     GCA CCA GCA GCA GCA GCA GCA ACA GCA
   215224  GCA *  7    19/21     GCA CCA ACA GCA GCA GCA GCA
   216347  TTA * 18    49/54     TTA TTA TTA TTA TTA TTA TTA CTA TTA CTA TTA TTA ATA TTA TAA TTA TTA TTG
   223069  CAG *  7    19/21     CAG CAG CCG CAG CAG CAG CCG
   248562  CAG *  7    19/21     CAG CAG CAG CAG CAG CAG CTA
   273391  CAG * 10    27/30     CAG CAG CAG CAG CAG CAG CAG CGG CAG TTG
   276854  ACA *  8    22/24     ACA ACA ACA ACA ACA GCA ACA GCA
   281246  GCA *  7    19/21     GCA GCA GCA GCG GCG GCA GCA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       283337 
 Total number of repeats detected..............       37 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATA      2       0       0       0       2       0       0       0       0       0       0       0       0   
  ATT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATC      1       0       0       1       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       0       0       0       1       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       1       1       0       0       0       0       0       0       0       0       0       0   
  TCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      8       8       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      4       2       1       1       0       0       0       0       0       0       0       0       0   
  CAG      6       5       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    2 ATA +   0 TAA +   1 ATT +   1 TTA +    1 TAT      =    5 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    1 ACA +   4 CAA +   1 GTT +   1 TTG +    2 TGT      =    9 
   0 ATG +    0 TGA +   1 GAT +   0 CAT +   1 ATC +    0 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   1 AGC +    8 GCA +   6 CAG +   1 GCT +   0 CTG +    2 TGC      =   18 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    1 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    1 TGG      =    1 
   0 GGC +    1 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7293918|gb|AE003522.1|AE003522 Drosophila melanogaster genomic scaffold 142000013386050 section 9 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    20683  CAG *  7    20/21     CAG CAG CAG CAG CAG CAG CAT
    20914  CCA *  7    19/21     CCA CCA CCG CCG CCA CCA CCA
    21088  CAG * 11    30/33     CAG CAG CAT CAG CAG CAG CAT CAG CAG CAT CAG
    21256  CAG *  7    19/21     CAG CAG CAA CAG CAA CAG CAG
    21390  CAG *  7    19/21     CAG CAG CAG CAG CAG CAA CGG
    30888  TGC *  7    19/21     TGC TGC TGC TGT TGC TGC TGT
    30926  CTG * 10    27/30     CTG CTG TTG CTG CTT CTG CTG CTG CTG TTG
    43822  AAC *  7    19/21     AAC AAA AAC AAA AAC AAC AAC
    68371  GTT *  9    25/27     GTT GTT GTT GTT GCT GTT GTT GTT GTG
    78056  TTA *  8    23/24     TTA TTA TTA TTA TTA TTA TTA TTT
    82581  GCA *  8    22/24     GCA ACA GCA GCA GCC GCA GCA GCA
    93600  GCA *  7    19/21     GCA ACT GCA GCA GCA GCA GCA
    93996  GCT * 12    33/36     GCT GCT GCT GCT GCT GCT GCT TCT ACT GTT GCT GCT
   103306  CTG * 12    34/36     CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG TTG CAG
   105326  CTT *  8    22/24     CTT CTT CTT CTT CTT CTT CTT CGC
   109794  GCA *  8    22/24     GCA GCA GCA GCA GCA GCA GCG ACA
   110422  GCA *  8    22/24     GCA GCA TCA GCA GCA GCA ACA GCA
   110459  CAG *  8    23/24     CAG CAG CAA CAG CAG CAG CAG CAG
   110609  CAG *  7    19/21     CAG CAT CAG CAC CAG CAG CAG
   110734  GCA *  8    22/24     GCA GCA GCA GCA GCA GCA ACC GCA
   110885  CAG *  7    19/21     CAG CAG CAA CAG CAG CAT CAG
   111316  GCA * 15    41/45     GCA GCA GCA GCA GCA ACA GCA GCA GCA GCA CCA GCA CCA GCA ACA
   116091  TGC *  9    25/27     TGC AGT TGC TGC TGC TGC TGC TGC TGC
   116131  GCT *  8    22/24     GCT GTC GCT GCT GCT GCT GCT GCT
   117334  TTA *  7    19/21     TTA TTA TTA TTA ATT TTA TTA
   126054  CAG *  9    25/27     CAG CAG CAG CAA CAA CAG CAG CAG CAG
   129749  GAT *  7    19/21     GAT GAT GAT GAT AAT GGT GAT
   156665  AAC *  7    19/21     AAC AAC AAC TAC TAC AAC AAC
   208124  CCA *  7    19/21     CCA CCA CCG CCA TCA CCA CCA
   208155  CAC * 11    30/33     CAC CAC CAT CAT CAC CAC CAC CAC CAC CAC CTC
   208191  CAC *  7    20/21     CAC CGC CAC CAC CAC CAC CAC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       290837 
 Total number of repeats detected..............       31 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TTA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      6       5       0       1       0       0       0       0       0       0       0       0       0   
  GCT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CAG      8       7       1       0       0       0       0       0       0       0       0       0       0   
  CAC      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      2       0       2       0       0       0       0       0       0       0       0       0       0   
  CCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   2 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   1 CTT +   0 TTC +    0 TCT      =    1 
   2 AAC +    0 ACA +   0 CAA +   1 GTT +   0 TTG +    0 TGT      =    3 
   0 ATG +    0 TGA +   1 GAT +   0 CAT +   0 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    6 GCA +   8 CAG +   2 GCT +   2 CTG +    2 TGC      =   20 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    2 CCA +   2 CAC +   0 GGT +   0 GTG +    0 TGG      =    4 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7293901|gb|AE003521.1|AE003521 Drosophila melanogaster genomic scaffold 142000013386050 section 8 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    45794  AAT *  7    19/21     AAT AAT AAT TAT ACT AAT AAT
    46892  GCA *  7    19/21     GCA ACA ACA GCA GCA GCA GCA
   122220  CAC *  8    23/24     CAC CAC TAC CAC CAC CAC CAC CAC
   161888  TTG *  7    19/21     TTG TTG TTG TTG TTG CTG CTG
   194439  GAG *  7    19/21     GAG GAG GAG AAG GCG GAG GAG
   265019  CAA *  8    22/24     CAA AAT CAA CAA CAA CAA CAA CAA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       271237 
 Total number of repeats detected..............       6 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   1 CAA +   0 GTT +   1 TTG +    0 TGT      =    2 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   1 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   0 AGC +    1 GCA +   0 CAG +   0 GCT +   0 CTG +    0 TGC      =    1 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   1 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7293883|gb|AE003520.1|AE003520 Drosophila melanogaster genomic scaffold 142000013386050 section 7 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    12312  TGT *  7    19/21     TGT TGT TGT TCT TGC TGT TGT
    21349  AGC *  8    22/24     AGC AGT AGC AGC AGC AGC AGC AGT
    21453  AGC *  7    20/21     AGC AGT AGC AGC AGC AGC AGC
    93314  TAA * 10    28/30     TAA TAA TAA TAA TAA TAA TAA TAA TAA CTA
   106506  AGC *  7    19/21     AGC AGC AAC AAC AGC AGC AGC
   106562  CAG *  7    19/21     CAG CAG CAA CAG CAG CAG CAA
   154234  GAG *  7    20/21     GAG GAG GAG GAG GAG GAG GAC
   229430  CAC * 10    28/30     CAC CAC CAA CAC CAC CAC CGC CAC CAC CAC
   245831  AAT * 14    38/42     AAT AAT AAT AAT AAT AAT AAT TAT AAT AAT AAT AAT AAT TTA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       292222 
 Total number of repeats detected..............       9 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       0       0       1       0       0       0       0       0       0       0       0       0   
  AGC      3       3       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAC      1       0       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   1 TAA +   0 ATT +   0 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    1 TGT      =    1 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   1 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   3 AGC +    0 GCA +   1 CAG +   0 GCT +   0 CTG +    0 TGC      =    4 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   1 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7293842|gb|AE003519.1|AE003519 Drosophila melanogaster genomic scaffold 142000013386050 section 6 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    64724  GGT *  7    20/21     GGT GGT GGT GGC GGT GGT GGT
    81780  TAA *  7    19/21     TAA TAA TAA TTA TAA TAA TTA
    91322  GGT * 10    27/30     GGT GGT GTT GGT GGT GGT GGT GTT GGT GTT
    93773  GGT *  7    19/21     GGT GGT GGT GGT GGT GGT GTG
    98968  CAA *  7    19/21     CAA CAA CCA CAG CAA CAA CAA
    99672  AAC *  9    25/27     AAC AAC AAC GAC AAC AAC AAC AAC ATC
   110074  CAG *  7    19/21     CAG CCG CAG CAG CAG CAT CAG
   110113  CAG *  7    19/21     CAG CAG CAG CAG CAG CAT CCG
   113620  GAG *  7    19/21     GAG GAG GAG GAT CAG GAG GAG
   118822  CAA *  7    19/21     CAA CAA CAA CAA CAA CGG CAA
   120710  CAG *  7    20/21     CAG CAG CAG CAG CAG CAG CAA
   120848  GCA *  7    19/21     GCA GCA GCA GCA GCA GCA GTT
   121057  CAA *  7    19/21     CAA CAA CAA CAA TAA TAA CAA
   121082  AAC *  7    19/21     AAC AAT AAC AAT AAC AAC AAC
   121669  GCA *  9    26/27     GCA GCA GCA GCA GCA GCA GCA GCA TCA
   123963  GCC *  8    22/24     GCC GAC GAC GCC GCC GCC GCC GCC
   125961  TTG *  7    19/21     TTG TTA TTG TTA TTG TTG TTG
   134852  ATT * 17    48/51     ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT TAA
   135672  GAC *  7    19/21     GAC GAC GAC GAC GAC GGC GGC
   137555  TTG *  7    19/21     TTG TTG TTG TTG CTA TTG TTG
   139318  AGC *  7    19/21     AGC AGC AAC AAC AGC AGC AGC
   139374  CAG *  7    19/21     CAG CAG CAA CAG CAG CAG CAA
   155366  GCA *  7    19/21     GCA GCT GGA GCA GCA GCA GCA
   155489  CAA * 10    28/30     CAA CAA CAA CAA CAA CAA TAA CAA CGA CAA
   155649  CAG *  7    19/21     CAG CAG CAG CAG CAA CAA CAG
   155673  CAG * 10    27/30     CAG CAG CAG CAA CAT CAG CAG CAG CAG CAA
   155859  GGC *  7    19/21     GGC GGT GGC GGC GGC GGT GGC
   160499  TCG *  7    20/21     TCG TTG TCG TCG TCG TCG TCG
   161337  TAT * 12    34/36     TAT TAT TAT TAT TAT AGT TAT TAT TAT TAT TAT TAT
   246288  CAG *  7    19/21     CAG CAG CAG CAG CAG CAG TCG
   253318  GTT *  7    19/21     GTT GTT GTT GTT GTT GCT GGT
   253345  GTT *  7    19/21     GTT GTT GTT GTT GTT GCT GCT
   253547  TGC * 12    33/36     TGC TGC TGC TGC TGC TGC TGT TGC TGT TGC TGC TGA
   253640  TGC * 11    30/33     TGC TGC TGC TGC TGC TGC TGC TGT TGA TGT TGC
   257820  TGC *  8    22/24     TGC TAT TGC TGC TGC TGC TGC TGC
   268775  ATG * 10    27/30     ATG ATA ATG ATG ATG ATG ATG ATG ATG AGC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       276243 
 Total number of repeats detected..............       36 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  ATT      1       0       0       0       1       0       0       0       0       0       0       0       0   
  ATG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGC      3       1       2       0       0       0       0       0       0       0       0       0       0   
  TCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GGT      3       2       1       0       0       0       0       0       0       0       0       0       0   
  GGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      3       3       0       0       0       0       0       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      4       3       1       0       0       0       0       0       0       0       0       0       0   
  CAG      7       6       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   1 TAA +   1 ATT +   0 TTA +    1 TAT      =    3 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   2 AAC +    0 ACA +   4 CAA +   2 GTT +   2 TTG +    0 TGT      =   10 
   1 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   1 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   1 AGC +    3 GCA +   7 CAG +   0 GCT +   0 CTG +    3 TGC      =   14 
   0 ACG +    0 CGA +   1 GAC +   0 CGT +   0 GTC +    1 TCG      =    2 
   0 ACC +    0 CCA +   0 CAC +   3 GGT +   0 GTG +    0 TGG      =    3 
   1 GGC +    0 GCG +   0 CGG +   1 GCC +   0 CCG +    0 CGC      =    2 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7293817|gb|AE003518.1|AE003518 Drosophila melanogaster genomic scaffold 142000013386050 section 5 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    34050  ACG *  7    20/21     ACG ACG ACG ACC ACG ACG ACG
    40876  GGA *  7    19/21     GGA GGA GGA GGA GGT GGT GGA
    41409  CAG *  7    19/21     CAG CAG AAG CAG CAG CAG TAG
    55175  CCA *  7    19/21     CCA CCA CCA CCT GCA CCA CCA
    74960  ATA * 18    50/54     ATA ATA ACA ATA ATA ATA ACA ATA ATA ATA ATA ATA TTA ATA ATA ATT ATA ATA
    81937  ATA * 18    50/54     ATA ATA ACA ATA ATA ATA ACA ATA ATA ATA ATA ATA TTA ATA ATA ATT ATA ATA
    88008  GAT *  7    19/21     GAT GAT GAT GGT CAT GAT GAT
    89966  ACC *  8    22/24     ACC ACC ACT ACC ATC ACC ACC ACC
   123595  TTA *  7    19/21     TTA TTA GTA TTA ATA TTA TTA
   144378  AGG *  7    19/21     AGG AGG AGG AGG AGG AGA AAG
   179879  GGA * 14    38/42     GGA GGA GGT GGA GGA GGA GGA GGA GGA GGA GGA GGA CGT GGC
   182521  CAA * 10    28/30     CAA CAG CAA CAA CAA CAA CAA CAA CAG CAA
   189985  AGC *  7    19/21     AGC AGC AGC AGC AGC AGC AAA
   192880  CAG *  8    22/24     CAG CAG CAG CAG CAG CAG CAG CGA
   193601  ACA *  8    22/24     ACA ACA ACA ACC ACA ACA ACA GCA
   194086  AGC *  7    19/21     AGC AGT CGC AGC AGC AGC AGC
   236816  GTT *  7    19/21     GTT GTT GTT ATT GTT GTT GTG
   266933  AGT *  9    25/27     AGT AGT AGT AGT GGT AGT AGT AGT AGC
   275318  ACG *  7    19/21     ACG ACG ACG ACG ACG ATG AGG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       280289 
 Total number of repeats detected..............       19 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATA      2       0       0       0       2       0       0       0       0       0       0       0       0   
  AGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  ACC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGA      2       1       0       1       0       0       0       0       0       0       0       0       0   
  CAA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CAG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    2 ATA +   0 TAA +   0 ATT +   1 TTA +    0 TAT      =    3 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    1 ACA +   1 CAA +   1 GTT +   0 TTG +    0 TGT      =    3 
   0 ATG +    0 TGA +   1 GAT +   0 CAT +   0 ATC +    0 TCA      =    1 
   1 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    1 
   1 AGG +    2 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    3 
   2 AGC +    0 GCA +   2 CAG +   0 GCT +   0 CTG +    0 TGC      =    4 
   2 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    2 
   1 ACC +    1 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7293794|gb|AE003517.1|AE003517 Drosophila melanogaster genomic scaffold 142000013386050 section 4 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    16689  ATG *  9    25/27     ATG ATG ATG ATG ATG ATG ATG CTG TTG
    24406  TGC *  7    19/21     TGC TGC TGC TGC TGC TTT TGC
    35231  CAG *  8    22/24     CAG CAG AAG CAG CAG CAG TAG CAG
    89195  CAG *  7    19/21     CAG CTG CAG CAG CAG CAC CAG
    94821  CAA * 14    38/42     CAA CAC AAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAT CAT
   140485  TGA *  8    23/24     TGA TGA TGA TGA TGA TGA TGA TGT
   176736  TCC *  7    20/21     TCC TCC ACC TCC TCC TCC TCC
   249655  TGC *  7    19/21     TGC TGC TGA TGC TGC TGC TGA
   256587  AAG *  7    19/21     AAG AAA AAG AAA AAG AAG AAG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       257672 
 Total number of repeats detected..............       9 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       0       0       1       0       0       0       0       0       0       0       0       0   
  CAG      2       2       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   1 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    1 
   0 AAC +    0 ACA +   1 CAA +   0 GTT +   0 TTG +    0 TGT      =    1 
   1 ATG +    1 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    1 TCC      =    1 
   0 AGC +    0 GCA +   2 CAG +   0 GCT +   0 CTG +    2 TGC      =    4 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7293747|gb|AE003516.1|AE003516 Drosophila melanogaster genomic scaffold 142000013386050 section 3 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     9227  TAA *  8    22/24     TAA TAA AAA TAA TAA TAA TAA TAC
    11483  TCA *  9    25/27     TCA TCA TCA TCA TCA TCA TCA TCA GCG
    13774  ATT *  9    25/27     ATT AGG ATT ATT ATT ATT ATT ATT ATT
    25500  AGG * 11    30/33     AGG AGG AGG AGG AGG AGG AAG AGA AGG AGG TGG
    52062  CAA *  8    23/24     CAA CAT CAA CAA CAA CAA CAA CAA
    59264  AGC *  8    22/24     AGC ACC AGC AGC CGC AGC AGC AGC
    60062  GCA * 12    33/36     GCA GCA GCA GCA GCA GCA ACA GCA GCA TCA GCA ACA
    60968  CAA *  7    19/21     CAA CAA CAA CAA CAG CAA CAG
    65393  TGC *  8    22/24     TGC TGC TGT TGC TGC TGC TGC TGT
    66914  GTG *  7    19/21     GTG GAG GTG GTG ATG GTG GTG
    69317  GCA *  7    19/21     GCA GCA GCA TCA GCA TCA GCA
    89106  GCG *  8    23/24     GCG GCG GCG GCA GCG GCG GCG GCG
    92494  CTC *  7    19/21     CTC CTC GTC CTC CTC CTG CTC
    94729  ACA * 15    42/45     ACA ACA ACA ACA ATA ACA ACA ACA ACA ACA ACA ACA ATA GCA ACA
   103937  CTG *  7    19/21     CTG CTG CTG CTG CTG CGG CGG
   162506  TGT * 13    36/39     TGT TGC TGT TGT TGT TGT TGT TGT TTT TGT TGT TGC TGT
   185787  AGC *  7    19/21     AGC AGC AGC AGC AGC AGC GAC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       287649 
 Total number of repeats detected..............       17 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  AGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       0       0       1       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       0       0       1       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   1 TAA +   1 ATT +   0 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    1 ACA +   2 CAA +   0 GTT +   0 TTG +    1 TGT      =    4 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    1 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   1 AGG +    0 GGA +   0 GAG +   0 CCT +   1 CTC +    0 TCC      =    2 
   2 AGC +    2 GCA +   0 CAG +   0 GCT +   1 CTG +    1 TGC      =    6 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   1 GTG +    0 TGG      =    1 
   0 GGC +    1 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7293706|gb|AE003515.1|AE003515 Drosophila melanogaster genomic scaffold 142000013386050 section 2 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    25611  AAG * 10    28/30     AAG AAG AAG AAG GAG AAG AGG AAG AAG AAG
    67857  TGC *  8    22/24     TGC TGT TGC TGC TGC TGC TGC GGC
   131156  GCA *  9    25/27     GCA GCA ACA GCA GCA GCA GCA ACA GCA
   132338  CAG *  7    19/21     CAG TAG CAG CAG CAG CAA CAG
   132496  GCT *  7    19/21     GCT GCT GCT GCT GCT GCT CCA
   132528  TCC * 11    30/33     TCC TCA TCG TCC TCC TCC TCC TCC TCC TCC TCA
   146487  GTT *  7    19/21     GTT GTA GTT GTT GTT GTT GTG
   146572  GTT *  9    25/27     GTT GTT GTT GTT GTT GTT GTT ATT GCT
   155626  CAA *  7    19/21     CAA CAA CAA AAA TAA CAA CAA
   157463  CAG *  7    19/21     CAG GAG CAG CAG CAG CAG CAA
   159128  GCA * 10    27/30     GCA GCA GCA GCA GCA GCA GCA ACA GCA ATA
   159888  GAC *  8    22/24     GAC GAC GAC GAC GAC GAT GAG GAC
   162986  ACG *  7    19/21     ACG ACG AAG ACG ACG ACT ACG
   163712  GAG * 11    30/33     GAG GAG GAG GAA GAA GAG GAG GAG GAG GAG AAG
   194822  AGC *  7    19/21     AGC AGC AAC AAC AGC AGC AGC
   194878  CAG *  7    19/21     CAG CAG CAA CAG CAG CAG CAA
   206850  TGT *  7    19/21     TGT TGC TGT TGT TGT TGT TGC
   207089  CTG *  7    19/21     CTG CTG CTG CGG CTG TTG CTG
   207994  TGC *  8    22/24     TGC TGC ATC TGC TGC TGC TGC TGC
   208360  TGC *  7    19/21     TGC TGC TGT TGT TGC TGC TGC
   231609  CCG *  7    19/21     CCG CCG CCG CCA CCG CCG ACG
   232631  TGA *  7    19/21     TGA TGA TGA TGA TGG TGA TGG
   232899  TGT *  8    22/24     TGT TGT TGT TGT TGT TGT TGC TGC
   255093  TGC *  7    19/21     TGC TGC TGC TGC TGC CAC TGC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       273521 
 Total number of repeats detected..............       24 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGC      4       4       0       0       0       0       0       0       0       0       0       0       0   
  TCC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GAG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCA      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      3       3       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   1 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    1 
   0 AAC +    0 ACA +   1 CAA +   2 GTT +   0 TTG +    2 TGT      =    5 
   0 ATG +    1 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   1 GAG +   0 CCT +   0 CTC +    1 TCC      =    2 
   1 AGC +    2 GCA +   3 CAG +   1 GCT +   1 CTG +    4 TGC      =   12 
   1 ACG +    0 CGA +   1 GAC +   0 CGT +   0 GTC +    0 TCG      =    2 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   1 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7293659|gb|AE003514.1|AE003514 Drosophila melanogaster genomic scaffold 142000013386050 section 1 of 54, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     2172  TTG *  7    19/21     TTG TTG TTG TTG TGG TTG TTC
     2214  TTG *  7    20/21     TTG TTG ATG TTG TTG TTG TTG
    88315  GCA *  7    19/21     GCA ACA GCA GCA GCA GCA ACA
    88348  GCA *  7    19/21     GCA GCA GCA ACA GCA GCA GCT
    88762  GCA *  8    22/24     GCA GCA ACA GCA GCA GCA GCA GAA
    90256  CAG *  8    22/24     CAG CAG CAG CAC CAG CAG CAG CAA
    90282  GCA *  7    21/21     GCA GCA GCA GCA GCA GCA GCA
    90442  CAA *  7    19/21     CAA CAA CAA CAA CAG CAG CAA
    90514  CAG *  8    22/24     CAG CAG CAG CAG GCG CAG CAG CAG
    90592  GCA *  7    19/21     GCA GCG GCG GCA GCA GCA GCA
    91500  CAA *  8    23/24     CAA CAA CTA CAA CAA CAA CAA CAA
   118758  TGG *  8    22/24     TGG TGC TGC TGG TGG TGG TGG TGG
   135587  AAC * 27    73/81     AAC AAT AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAT AAT AGC AGT ATA
   136963  GCA *  7    19/21     GCA GCA GCA GCA GCA GCG GGA
   174537  CAC *  8    22/24     CAC GAC CAA CAC CAC CAC CAC CAC
   223130  AGG *  7    19/21     AGG AGG AGG GGG AGG AGG AGT
   243283  AGT *  8    23/24     AGT TGT AGT AGT AGT AGT AGT AGT
   253484  CCT *  7    19/21     CCT CTT CCT CCT CCT CCC CCT
   253901  AGT *  7    19/21     AGT AGT AGT AGT AGT AGT GGC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       274668 
 Total number of repeats detected..............       19 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      1       0       0       0       0       0       0       1       0       0       0       0       0   
  AGT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  AGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      6       6       0       0       0       0       0       0       0       0       0       0       0   
  CAA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    0 ACA +   2 CAA +   0 GTT +   2 TTG +    0 TGT      =    5 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   2 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    2 
   1 AGG +    0 GGA +   0 GAG +   1 CCT +   0 CTC +    0 TCC      =    2 
   0 AGC +    6 GCA +   2 CAG +   0 GCT +   0 CTG +    0 TGC      =    8 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   1 CAC +   0 GGT +   0 GTG +    1 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7289390|gb|AE003204.1|AE003204 Drosophila melanogaster genomic scaffold 142000013385626, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       14074 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7289766|gb|AE003242.1|AE003242 Drosophila melanogaster genomic scaffold 142000013385958, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       20950 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7288950|gb|AE002969.1|AE002969 Drosophila melanogaster genomic scaffold 142000013385262, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       19560 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7289605|gb|AE002867.1|AE002867 Drosophila melanogaster genomic scaffold 142000013385810, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       1179 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7289134|gb|AE003115.1|AE003115 Drosophila melanogaster genomic scaffold 142000013385416, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     1807  TGG *  7    19/21     TGG TGG TGG TGG TGA TGA TGG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       3101 
 Total number of repeats detected..............       1 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  TGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    0 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    0 GCA +   0 CAG +   0 GCT +   0 CTG +    0 TGC      =    0 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    1 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7316094|gb|AE002647.1|AE002647 Drosophila melanogaster genomic scaffold 142000013386036, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       0 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7296579|gb|AE003599.1|AE003599 Drosophila melanogaster genomic scaffold 142000013386036 section 9 of 9, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     5767  CTG * 17    46/51     CTG CTG CTG TTG CTG CTG CTG CTG CTG CTG CTG TTG CTG TTG CTG TTG TTG
     8534  CTG *  9    26/27     CTG CTG CTG CTG CTG TTG CTG CTG CTG
    31368  TGC *  7    20/21     TGC TGT TGC TGC TGC TGC TGC
    33640  TTG * 12    34/36     TTG TTG CTG TTA TTG TTG TTG TTG TTG TTG TTG TTG
    47928  ATT * 11    30/33     ATT ATT ATT ATT CTT ATT ATT ATT ATT ATA TTT
    55035  ATT * 10    28/30     ATT ATT ATT ATT ACT ATA ATT ATT ATT ATT
   133657  TAA *  8    22/24     TAA TAG GAA TAA TAA TAA TAA TAA
   133706  ATA * 84   227/252    ATA ATA ATA ATA ATA ATA AAA AAA ATA GTA ATA ATA ATA ATT ATA ATA ATA ATA ATA ATA ATA ATA ATT ATA ATA ATA ATA ATT ATA ATT ATT ATA TTA ATT ATA ATA ATA ATA ATT ATA ATA ATA ATA ATT ATA ATA ATA ATA ATT ATA ATA ATA ATA ATT ATA ATA ATA ATA ATT ATA ATA ATA ATA ATT ATA ATA ATA ATA ATT ATA ATA ATA ATA ATT ATA ATA ATA ATA ATA ATG TTA GTA ATT GGT
   150904  AAC * 11    30/33     AAC AAT AAC AAC AAC AAC AAC AAC AAC AGT AAC
   228279  TCT *  8    22/24     TCT TCT TCT ACT TCT TCC TCT TCT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       242396 
 Total number of repeats detected..............       10 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  ATA      1       0       0       0       0       0       0       0       0       0       0       0       1   
  ATT      2       0       2       0       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      2       1       0       0       1       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    1 ATA +   1 TAA +   2 ATT +   0 TTA +    0 TAT      =    4 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    1 TCT      =    1 
   1 AAC +    0 ACA +   0 CAA +   0 GTT +   1 TTG +    0 TGT      =    2 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    0 GCA +   0 CAG +   0 GCT +   2 CTG +    1 TGC      =    3 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7296549|gb|AE003598.1|AE003598 Drosophila melanogaster genomic scaffold 142000013386036 section 8 of 9, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    27918  ATT *  8    22/24     ATT ATT ATA AGT ATT ATT ATT ATT
    49739  CAT *  8    22/24     CAT CAT CAT CAT CAT TGT CAT CAT
    93838  CTG *  8    22/24     CTG CTG CTG CAG CTG TTG CTG CTG
    93863  TGC * 10    28/30     TGC TGC TGT TGC TGC TGC TGC TGC TGC GGC
    94597  GTT *  7    19/21     GTT GTT GTT GTA GTG GTT GTT
   203027  GTG *  7    19/21     GTG GTG GTA GTG GTG GTG GCG
   204256  GAG *  7    19/21     GAG GAA GAG GAT GAG GAG GAG
   204993  TCG *  7    19/21     TCG TCC TCG TCC TCG TCG TCG
   206826  CCT *  7    19/21     CCT CCT CCT CAT CCT CTT CCT
   211871  AGG *  9    25/27     AGG AGA AGG AAG AGG AGG AGG AGG AGG
   259328  ACA *  7    19/21     ACA ACA ACA GCT ACA ACA ACA
   260310  GAC *  7    19/21     GAC GAG GAC GAC GAC GAC GAG
   278745  TTA * 11    31/33     TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TAT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       303162 
 Total number of repeats detected..............       13 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   1 ATT +   1 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    1 ACA +   0 CAA +   1 GTT +   0 TTG +    0 TGT      =    2 
   0 ATG +    0 TGA +   0 GAT +   1 CAT +   0 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   1 AGG +    0 GGA +   1 GAG +   1 CCT +   0 CTC +    0 TCC      =    3 
   0 AGC +    0 GCA +   0 CAG +   0 GCT +   1 CTG +    1 TGC      =    2 
   0 ACG +    0 CGA +   1 GAC +   0 CGT +   0 GTC +    1 TCG      =    2 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   1 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7296525|gb|AE003597.1|AE003597 Drosophila melanogaster genomic scaffold 142000013386036 section 7 of 9, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    17718  ATT *  9    26/27     ATT ATT ATT ATT ATT GTT ATT ATT ATT
    26406  CTG * 12    34/36     CTG CTG CTG CTG CTT CTG CTG CTC CTG CTG CTG CTG
    72450  CTC * 15    41/45     CTC CTC CTC CTC CGC CTC CTC CTC CTC CTC CTC GTC CTC CTC GTT
    76185  TGC * 11    30/33     TGC TGT TGT TGC TGC TGC TGC TGC TGC TGT TGC
   112787  CTC *  8    23/24     CTC ATC CTC CTC CTC CTC CTC CTC
   132846  TAA *  7    19/21     TAA TAA TAA TAA TCA CAA TAA
   137603  CAA * 27    73/81     CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAG CAA CAA CAA CAA CAA CAA CAG CAG CAG CAG CAA CAA GAA CAA ACA
   143579  AGC *  7    19/21     AGC AGC AGC AGC AGT AGC GGC
   175148  TCA *  7    20/21     TCA TCA TCA TCT TCA TCA TCA
   200765  GAC *  8    22/24     GAC GTC GAC GAC GAC GAC GAC GGC
   255206  CAG *  7    19/21     CAG AAG CAG CAG CAG GAG CAG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       295566 
 Total number of repeats detected..............       11 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       0       0       0       0       0       0       1       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CTC      2       1       0       1       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   1 TAA +   1 ATT +   0 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   1 CAA +   0 GTT +   0 TTG +    0 TGT      =    1 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    1 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   2 CTC +    0 TCC      =    2 
   1 AGC +    0 GCA +   1 CAG +   0 GCT +   1 CTG +    1 TGC      =    4 
   0 ACG +    0 CGA +   1 GAC +   0 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7296506|gb|AE003596.1|AE003596 Drosophila melanogaster genomic scaffold 142000013386036 section 6 of 9, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    20043  CAG * 12    33/36     CAG CAG CGG CAG CAG CAG CAG CAG CCG CAG AAG CAG
   105021  AGG *  7    20/21     AGG AGG AGG AGG AGG AGG AAG
   121408  GGA * 10    27/30     GGA GGA GGA GGA GCA GGT GGA GGA GGA GCA
   140813  AGC * 10    28/30     AGC AGT GGC AGC AGC AGC AGC AGC AGC AGC
   194146  TCC *  7    19/21     TCC TCC TCC TCC TCC TGC TCT
   196476  TTG *  8    22/24     TTG TTG TTG TTG TTG TTG TTA TTA
   196500  TTA * 11    30/33     TTA TTA TTA TTA TTC TTA TTA TTA TTA TTG TTG
   208009  GCA * 12    33/36     GCA GCA GCA GCA CCA CCA GCA GCA GCA GCA GCA CCA
   208046  CAG *  8    22/24     CAG CAG CAG CAG CAG CAC CAC CAG
   211724  CAA *  7    20/21     CAA CAA CAA CAC CAA CAA CAA
   234704  CAC *  8    22/24     CAC CAC CAC CAC CAC CAT CGC CAC
   249787  CAT *  8    22/24     CAT CAT CAT CAT CCT CAT CCT CAT
   266955  TCA * 10    27/30     TCA TCA TCA TCA TCA TCA TCA CCA CCA TCC
   274235  TTG *  8    22/24     TTG TGG TTG TTT TTG TTG TTG TTG
   277074  AGG *  7    20/21     AGG AGT AGG AGG AGG AGG AGG
   306982  GAT *  7    19/21     GAT GAT GAT GAT GAT GAC GAC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       318817 
 Total number of repeats detected..............       16 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AGG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TTA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TCA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GCA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   1 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   1 CAA +   0 GTT +   2 TTG +    0 TGT      =    3 
   0 ATG +    0 TGA +   1 GAT +   1 CAT +   0 ATC +    1 TCA      =    3 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   2 AGG +    1 GGA +   0 GAG +   0 CCT +   0 CTC +    1 TCC      =    4 
   1 AGC +    1 GCA +   2 CAG +   0 GCT +   0 CTG +    0 TGC      =    4 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   1 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7296463|gb|AE003595.1|AE003595 Drosophila melanogaster genomic scaffold 142000013386036 section 5 of 9, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    18223  GCA *  8    22/24     GCA GCA GCC GCG GCA GCA GCA GCA
    18250  GCA *  8    22/24     GCA GCA GCA GCA GCA GCA GCC GCC
    22364  AGG *  8    22/24     AGG AGG AGG AGG AGG ACG AGC AGG
    60653  CAG *  8    22/24     CAG CAG CAG CAG CAG CAG CAG GAT
    88584  TGA * 10    27/30     TGA TCA TGA TGA TGA TGA TGA TGT TGA TGG
    90623  GGA *  7    19/21     GGA GGA GGA GGA GGA GGT CGA
   111833  GTG *  7    19/21     GTG GTG GTG GTA GTG GTA GTG
   113929  GGT *  7    19/21     GGT GGC AGT GGT GGT GGT GGT
   114474  TGA *  7    20/21     TGA TGA TGA TGA TGA TGA TGG
   114551  TGA *  7    19/21     TGA TGA TGA TGA TGA GGA TGT
   125600  CAG *  7    19/21     CAG CAG CAG GAT CAG CAG CAG
   140018  AAC *  7    19/21     AAC AAC AAC AAC AAC AGG AAC
   181862  CTG *  8    22/24     CTG CTG CTG CTG CTG CTG CTT CTC
   215403  TTA *  7    21/21     TTA TTA TTA TTA TTA TTA TTA
   225516  TGT *  7    19/21     TGT TGT TGT TGT CGA TGT TGT
   228283  GCT *  7    19/21     GCT GCA GAT GCT GCT GCT GCT
   231684  TAA * 40   108/120    TAA TAA AAA TAA TGA TAA TAA TAA TAA TAT TAA TAA TAA CAA TAA TAA TTA TAA TAA TAA TAA TAA TAA TAA TAA GAA CAA TAA TAA TAA TAA TAA TAA TAT TTA TAA TAT TAA TAT TAT
   231835  TAA * 70   190/210    TAA TAA TAA TAT TAA TGA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TTA TAA TAA TAA CCA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA CAG TAC CAA TAC TAA AAA GAA TAA TCA GAT TTA ATC AAA
   244466  ACA *  8    22/24     ACA ACA AAA ACA ACA GCA ACA ACA
   269167  TAT *  7    19/21     TAT GAT TAT TAT TAT AAT TAT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       294257 
 Total number of repeats detected..............       20 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAA      2       0       0       0       0       0       0       0       0       0       0       0       2   
  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGA      3       2       1       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   2 TAA +   0 ATT +   1 TTA +    1 TAT      =    4 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    1 ACA +   0 CAA +   0 GTT +   0 TTG +    1 TGT      =    3 
   0 ATG +    3 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    3 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   1 AGG +    1 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    2 
   0 AGC +    2 GCA +   2 CAG +   1 GCT +   1 CTG +    0 TGC      =    6 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   1 GGT +   1 GTG +    0 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7296405|gb|AE003594.1|AE003594 Drosophila melanogaster genomic scaffold 142000013386036 section 4 of 9, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    21824  GCT *  7    19/21     GCT GCT GCT GCA GCT GCC GCT
    42378  GTG *  8    22/24     GTG GTG ATG ATG GTG GTG GTG GTG
    45454  CCA *  8    23/24     CCA CCA CCA TCA CCA CCA CCA CCA
    71932  TTG *  7    20/21     TTG GTG TTG TTG TTG TTG TTG
    81892  TTA *  7    20/21     TTA TTA TTA TTA TAA TTA TTA
    91126  ATT *  8    22/24     ATT ATT ATT ATT ATT ATT ATG ATA
    95264  GTG *  7    20/21     GTG GTG GTG GTG GTG TTG GTG
   132290  AAC * 12    35/36     AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAA
   188280  TGC * 11    30/33     TGC TGC TGC GGC TGC TGC TGC TGC TGC GGT TGC
   199764  TGG *  8    22/24     TGG TGA TGA TGG TGG TGG TGG TGG
   199980  CCG *  7    19/21     CCG CCA CCG CCG CCG CCT CCG
   205533  ATG *  7    20/21     ATG ATG ATG ATG ATG ATG ATT
   208375  AAT * 11    31/33     AAT AAT AAT AAT AAT TAT AAT AAT AAT AAT AAA
   222002  ATA *  8    22/24     ATA ATA ATA ATA ATA ATA ATA AAT
   274901  GCT *  7    19/21     GCT GCT GCT GCT GCA GCT GTT
   275307  TTG *  7    19/21     TTG TGG TTG TTG CTG TTG TTG
   275769  CTC *  7    19/21     CTC CTC CTC CTC TTC CTC GTC
   281742  TGC *  8    22/24     TGC TGC TGC GGC TGC TGG TGC TGC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       305516 
 Total number of repeats detected..............       18 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  AAC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  ATA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    1 ATA +   0 TAA +   1 ATT +   1 TTA +    0 TAT      =    4 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    0 ACA +   0 CAA +   0 GTT +   2 TTG +    0 TGT      =    3 
   1 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   1 CTC +    0 TCC      =    1 
   0 AGC +    0 GCA +   0 CAG +   2 GCT +   0 CTG +    2 TGC      =    4 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    1 CCA +   0 CAC +   0 GGT +   2 GTG +    1 TGG      =    4 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   1 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7296371|gb|AE003593.1|AE003593 Drosophila melanogaster genomic scaffold 142000013386036 section 3 of 9, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    38421  GTT *  7    20/21     GTT GTT GTT GTT GTT GAT GTT
    47406  GCT *  7    19/21     GCT GCT GCT GCG GCT GCC GCT
    51361  GCT *  7    19/21     GCT GCT GCT GCT GTT GCT GCA
    51414  GAC * 11    30/33     GAC GAC GAC GAC GAC GAC GAC GAC GAT GAT GAA
    93092  TCA *  7    19/21     TCA TCA TCG TCA TCA TCA TCT
    96851  AAC *  9    25/27     AAC AAC AAC AAC AAC AAC AAC AAG AAA
   111861  CAC * 10    27/30     CAC CAC CAC CAC CAC CAC CAC CAG CTC CAT
   116353  CAG *  7    19/21     CAG CAG CAG CAA CAG CAG CAC
   116571  GCA *  7    19/21     GCA GCA CCA GCA ACA GCA GCA
   120078  AGC *  7    19/21     AGC AGC ATG AGC AGC AGC AGC
   123680  GCC *  7    19/21     GCC ACC GCT GCC GCC GCC GCC
   138548  TGC * 14    40/42     TGC TGC TGT TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGT
   154678  GAT *  8    22/24     GAT GAT GAT GAT GCG GAT GAT GAT
   155730  CTG *  7    19/21     CTG CTG CTG CTG CTG CTG CAA
   157325  CAA * 10    28/30     CAA TAG CAA CAA CAA CAA CAA CAA CAA CAA
   190916  AAT *  7    19/21     AAT AAT AAT AAA AAA AAT AAT
   223933  AAG *  7    19/21     AAG AGG AAG AAG AAG AAG CAG
   232791  CTG *  8    22/24     CTG CTG CTG TTG TTG CTG CTG CTG
   232825  TGC *  8    22/24     TGC TGC TGT TGC TGC TGC TGC AGC
   239172  TGA * 10    27/30     TGA TGA TGG TGA TGA TGA TGA CGA TGA TGT
   239694  CAG *  8    22/24     CAG CAG GAG CAG CAG TAG CAG CAG
   250111  GTT *  7    19/21     GTT GCT GTT GTT GTT GTT GCT
   250698  AAC *  7    19/21     AAC AAC AGC AAC AAC AGC AAC
   268602  TGC * 10    27/30     TGC TGC TGC CGC TGC TGC TTC TGC TGC TGT
   275120  GAA *  7    19/21     GAA GAA GAA GGC GAA GAA GAA
   275303  CAG *  8    22/24     CAG CAG CAT CAG CAG CAG AAG CAG
   275450  CAG *  7    19/21     CAG CAG CAG CAG CAA CGG CAG
   275489  CAG *  8    22/24     CAG CAA CAG CAG CAG CAG CAG CAA
   278355  CAG *  7    19/21     CAG CTG CAA CAG CAG CAG CAG
   278429  CAG *  8    22/24     CAG CAG CAG CAG CAA CGG CAG CAG
   281841  CAA * 10    28/30     CAA CAA CAA CAA CAA CAG CAA CAA CAT CAA
   284867  CAG *  8    22/24     CAG CAG AAA CAG CAG CAG CAG CAG
   287405  CAG *  7    19/21     CAG CAG CAG CAG CAA CAT CAG
   304221  ATG *  7    20/21     ATG ACG ATG ATG ATG ATG ATG
   310501  CAG *  7    19/21     CAG CAG CAG CAG CAA CAG CAT
   310528  CAG *  7    19/21     CAG CAG CAA CAG CAG CAG CAA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       313115 
 Total number of repeats detected..............       36 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AAC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGC      3       1       1       1       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GTT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      2       0       2       0       0       0       0       0       0       0       0       0       0   
  CAG     11      11       0       0       0       0       0       0       0       0       0       0       0   
  CAC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   1 AAG +    0 AGA +   1 GAA +   0 CTT +   0 TTC +    0 TCT      =    2 
   2 AAC +    0 ACA +   2 CAA +   2 GTT +   0 TTG +    0 TGT      =    6 
   1 ATG +    1 TGA +   1 GAT +   0 CAT +   0 ATC +    1 TCA      =    4 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   1 AGC +    1 GCA +  11 CAG +   2 GCT +   2 CTG +    3 TGC      =   20 
   0 ACG +    0 CGA +   1 GAC +   0 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   1 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   1 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7296338|gb|AE003592.1|AE003592 Drosophila melanogaster genomic scaffold 142000013386036 section 2 of 9, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    35722  CAA *  7    19/21     CAA TAA CAA CAA CAA CAA CAC
    59198  TGA *  7    19/21     TGA TGA TGA TGA TGA TGC TGC
    64830  CTG * 10    27/30     CTG CTG CTG CTG CTG CTG CTG ATG ATG GTG
    94025  ATC *  9    25/27     ATC ATC ATC GTC ATC ATC ATC ATC GTC
   100845  TTA *  7    19/21     TTA TTA TTA TTA TTA TTT TTT
   105318  TGC *  7    19/21     TGC TGC TGC TGT TGC TGC TGG
   179356  CTG *  7    19/21     CTG CTG CTG CTG CTG CCA CTG
   224902  TGC *  8    22/24     TGC TGC TGC TGC TGT TGC TGT TGC
   228781  CAG *  7    19/21     CAG CAG CAG GAG CAG GAG CAG
   230177  CTG *  7    19/21     CTG GTG CTG CTG TTG CTG CTG
   266793  TCC *  7    19/21     TCC TCC TCA TCC TCC TTC TCC
   276007  GGA *  8    22/24     GGA GGA GGA GGA GGA GGA GGT GGT
   303752  AGC * 12    33/36     AGC AGC AGC AGC AGC AGC AGC AGC GGC AAC AGC AAC
   305757  GCC * 11    31/33     GCC GCC GCC GCC GCC GCC GCC GCC GCC GCC ACA
   316249  ACA * 10    28/30     ACA ACA ACA ACA ACA ACA ACA ACA GCA GCA
   316580  CAT *  8    23/24     CAT CAT CAT CAT CAT CAT CAT CGT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       322667 
 Total number of repeats detected..............       16 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  ACA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      3       2       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   1 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    1 ACA +   1 CAA +   0 GTT +   0 TTG +    0 TGT      =    2 
   0 ATG +    1 TGA +   0 GAT +   1 CAT +   1 ATC +    0 TCA      =    3 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    1 GGA +   0 GAG +   0 CCT +   0 CTC +    1 TCC      =    2 
   1 AGC +    0 GCA +   1 CAG +   0 GCT +   3 CTG +    2 TGC      =    7 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   1 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7296281|gb|AE003591.1|AE003591 Drosophila melanogaster genomic scaffold 142000013386036 section 1 of 9, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    67354  GCC *  8    23/24     GCC GCC GCC GCC GCC GCC TCC GCC
    69589  AGC *  8    22/24     AGC AAC AAC AGC AGC AGC AGC AGC
    77872  TCG *  8    22/24     TCG TCA TCA TCG TCG TCG TCG TCG
   142222  TTG *  8    22/24     TTG TTG TTG TTG TTG TTG TTG GCG
   162259  TTA * 10    28/30     TTA TTG TTA TTA TTA TTA TTA TTA TTA TTC
   179628  AGC *  9    25/27     AGC AGC CGC AGC AAC AGC AGC AGC AGC
   238402  AAC *  7    19/21     AAC AAC AAC TAA AAC AAC AAC
   243997  GAT *  7    20/21     GAT GAT GAT GAT GAT GGT GAT
   252750  CGT *  7    19/21     CGT CGT CGT CGT CGT CAT CAT
   252873  GAT *  7    19/21     GAT GGT GAT GAT GAT GGT GAT
   267262  TAT * 11    30/33     TAT TAT TAT TAT TAT TAT TAT TGT TAT TGT TGT
   268279  CTC * 10    28/30     CTC CTC CTC CTC CTC CTC CTC CTC CTC CCG
   268736  CTG *  7    19/21     CTG CTG CTG CTG CTC CTG CAG
   269576  TGC *  7    20/21     TGC TGT TGC TGC TGC TGC TGC
   277659  TGT *  8    22/24     TGT TGT TGT TGT TGT GGC TGT TGT
   292792  AAT *  7    19/21     AAT AAT ACA AAT AAT AAT AAT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       297877 
 Total number of repeats detected..............       16 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TAT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TTA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   1 TTA +    1 TAT      =    3 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    0 ACA +   0 CAA +   0 GTT +   1 TTG +    1 TGT      =    3 
   0 ATG +    0 TGA +   2 GAT +   0 CAT +   0 ATC +    0 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   1 CTC +    0 TCC      =    1 
   2 AGC +    0 GCA +   0 CAG +   0 GCT +   1 CTG +    1 TGC      =    4 
   0 ACG +    0 CGA +   0 GAC +   1 CGT +   0 GTC +    1 TCG      =    2 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   1 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7289763|gb|AE002698.1|AE002698 Drosophila melanogaster genomic scaffold 142000013385955, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       3074 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7289744|gb|AE002786.1|AE002786 Drosophila melanogaster genomic scaffold 142000013385942, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    31163  AAT *  7    19/21     AAT AAT AAT AAT AAT AAT CGT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       46468 
 Total number of repeats detected..............       1 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    0 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    0 GCA +   0 CAG +   0 GCT +   0 CTG +    0 TGC      =    0 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7289859|gb|AE002656.1|AE002656 Drosophila melanogaster genomic scaffold 142000013386032, complete sequence
 
 Position  Repeat     Coverage   Repeat 

   157609  GTT *  7    19/21     GTT GTT GTT GGT GTT GCT GTT
   191672  TTA *  7    19/21     TTA TTG TTA TTA TTA TTA TTT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       192318 
 Total number of repeats detected..............       2 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   1 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   1 GTT +   0 TTG +    0 TGT      =    1 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    0 GCA +   0 CAG +   0 GCT +   0 CTG +    0 TGC      =    0 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7289180|gb|AE002893.1|AE002893 Drosophila melanogaster genomic scaffold 142000013385459, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       12718 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7289879|gb|AE002612.1|AE002612 Drosophila melanogaster genomic scaffold 142000013386048, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    41269  GAA *  7    19/21     GAA GAA GAG GAA GAA GAT GAA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       62039 
 Total number of repeats detected..............       1 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  GAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   1 GAA +   0 CTT +   0 TTC +    0 TCT      =    1 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    0 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    0 GCA +   0 CAG +   0 GCT +   0 CTG +    0 TGC      =    0 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7288924|gb|AE002622.1|AE002622 Drosophila melanogaster genomic scaffold 142000013385237, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       19569 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7288927|gb|AE002700.1|AE002700 Drosophila melanogaster genomic scaffold 142000013385240, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       27887 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7289063|gb|AE002771.1|AE002771 Drosophila melanogaster genomic scaffold 142000013385352, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       12661 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7289072|gb|AE002945.1|AE002945 Drosophila melanogaster genomic scaffold 142000013385361, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       24781 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7289452|gb|AE002985.1|AE002985 Drosophila melanogaster genomic scaffold 142000013385679, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       14450 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7289817|gb|AE003107.1|AE003107 Drosophila melanogaster genomic scaffold 142000013386005, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       3855 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7289498|gb|AE003116.1|AE003116 Drosophila melanogaster genomic scaffold 142000013385716, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       47681 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7289428|gb|AE003123.1|AE003123 Drosophila melanogaster genomic scaffold 142000013385660, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       1928 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7289557|gb|AE003131.1|AE003131 Drosophila melanogaster genomic scaffold 142000013385771, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     5236  CTT *  7    19/21     CTT CAT CTT CTT CCT CTT CTT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       18252 
 Total number of repeats detected..............       1 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  CTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   1 CTT +   0 TTC +    0 TCT      =    1 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    0 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    0 GCA +   0 CAG +   0 GCT +   0 CTG +    0 TGC      =    0 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7289011|gb|AE003041.1|AE003041 Drosophila melanogaster genomic scaffold 142000013385314, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       20379 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7289447|gb|AE002665.1|AE002665 Drosophila melanogaster genomic scaffold 142000013385677, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    80824  TTA *  7    19/21     TTA TTA TTT TTA TTA TTA TTT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       111329 
 Total number of repeats detected..............       1 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   1 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    0 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    0 GCA +   0 CAG +   0 GCT +   0 CTG +    0 TGC      =    0 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7289124|gb|AE002673.1|AE002673 Drosophila melanogaster genomic scaffold 142000013385408, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       11578 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7288933|gb|AE002585.1|AE002585 Drosophila melanogaster genomic scaffold 142000013385245, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       3866 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7288940|gb|AE002772.1|AE002772 Drosophila melanogaster genomic scaffold 142000013385252, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       17099 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7289795|gb|AE003009.1|AE003009 Drosophila melanogaster genomic scaffold 142000013385983, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       5331 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7289101|gb|AE003147.1|AE003147 Drosophila melanogaster genomic scaffold 142000013385388, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       12069 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7288946|gb|AE003235.1|AE003235 Drosophila melanogaster genomic scaffold 142000013385258, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       15690 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7289104|gb|AE003139.1|AE003139 Drosophila melanogaster genomic scaffold 142000013385390, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       53962 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
-----------------------------------------------------------------------------------------
 

Tri-nucleotide repeats in Drosophila melanogaster Chromosome-Arm-3L Genomic Scaffolds
Minimum tri-nucleotide repeating units = 7 (allowing maximum of 10% mismatch)
Total 111 sequences searched with a total of 23674253 bp length
Total 1963 repeats covering 44976 / 49026 base pairs
Length distribution of all tri-nucleotide repeats 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
no. of repeat-units    7    8    9   10   11   12   13   14   15   16   17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   33   34   35   36   37   38   39  >=40 

total repeats        994  499   92  152   99   48   14   21   16    4    4   11    0    1    1    2    0    0    0    0    2    0    0    0    0    0    0    0    0    0    0    0    0    3 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
 Length distribution of all tri-nucleotide repeats 

 No. of repeat units>   7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39   >=40 

 total repeats-->     1585     299      51      19       2       2       2       0       0       0       0       3   

       AAT              31       5       1       0       0       0       0       0       0       0       0       0   
       AAG               6       3       0       0       0       0       0       0       0       0       0       0   
       AAC              46      10       0       0       0       0       1       0       0       0       0       0   
       ATA              17       1       1       6       0       0       0       0       0       0       0       1   
       ATT              25       3       0       1       0       0       0       0       0       0       0       0   
       ATG              22       8       0       0       1       0       0       0       0       0       0       0   
       ATC              16       0       1       0       0       0       0       0       0       0       0       0   
       AGA               2       1       0       0       0       0       0       0       0       0       0       0   
       AGT               8       1       0       0       0       0       0       0       0       0       0       0   
       AGG              13       3       0       0       0       0       0       0       0       0       0       0   
       AGC              66      17       2       1       0       0       0       0       0       0       0       0   
       ACA              54       3       2       0       0       1       0       0       0       0       0       0   
       ACT               3       0       0       0       0       0       0       0       0       0       0       0   
       ACG               5       1       0       0       0       0       0       0       0       0       0       0   
       ACC               5       0       0       0       0       0       0       0       0       0       0       0   
       TAA              22       3       0       0       0       0       0       0       0       0       0       2   
       TAT              15       3       0       0       0       0       0       0       0       0       0       0   
       TAG               2       0       0       0       0       0       0       0       0       0       0       0   
       TAC               0       1       0       0       0       0       0       0       0       0       0       0   
       TTA              27       6       0       1       0       0       0       0       0       0       0       0   
       TTG              52       7       1       2       0       0       0       0       0       0       0       0   
       TTC               3       0       0       0       0       0       0       0       0       0       0       0   
       TGA              19       8       1       0       0       0       0       0       0       0       0       0   
       TGT              66       6       3       0       0       0       0       0       0       0       0       0   
       TGG              13       4       1       1       0       0       0       0       0       0       0       0   
       TGC             143      43       7       3       0       0       0       0       0       0       0       0   
       TCA              26       6       0       0       0       0       0       0       0       0       0       0   
       TCT               7       0       0       0       0       0       0       0       0       0       0       0   
       TCG              13       0       0       0       0       0       0       0       0       0       0       0   
       TCC              13       3       0       0       0       0       0       0       0       0       0       0   
       GAA               6       1       0       0       0       0       0       0       0       0       0       0   
       GAT              31       6       1       0       0       1       0       0       0       0       0       0   
       GAG              19       3       0       0       0       0       0       0       0       0       0       0   
       GAC              15       2       0       0       0       0       0       0       0       0       0       0   
       GTA               3       0       0       0       0       0       0       0       0       0       0       0   
       GTT              37       4       0       0       0       0       0       0       0       0       0       0   
       GTG              15       2       0       0       0       0       0       0       0       0       0       0   
       GTC               6       0       1       0       0       0       0       0       0       0       0       0   
       GGA              13       4       1       0       0       0       0       0       0       0       0       0   
       GGT              19       2       0       0       0       0       0       0       0       0       0       0   
       GGC               4       0       0       0       0       0       0       0       0       0       0       0   
       GCA             126      30       7       0       1       0       0       0       0       0       0       0   
       GCT              60       9       4       0       0       0       0       0       0       0       0       0   
       GCG               7       0       0       0       0       0       0       0       0       0       0       0   
       GCC              14       2       0       0       0       0       0       0       0       0       0       0   
       CAA              74      15       3       0       0       0       1       0       0       0       0       0   
       CAT              27       6       3       0       0       0       0       0       0       0       0       0   
       CAG             186      40       2       2       0       0       0       0       0       0       0       0   
       CAC              18       3       0       1       0       0       0       0       0       0       0       0   
       CTA               3       0       0       0       0       0       0       0       0       0       0       0   
       CTT              13       1       0       0       0       0       0       0       0       0       0       0   
       CTG              74      18       7       1       0       0       0       0       0       0       0       0   
       CTC              18       1       1       0       0       0       0       0       0       0       0       0   
       CGA               3       0       0       0       0       0       0       0       0       0       0       0   
       CGT               7       0       1       0       0       0       0       0       0       0       0       0   
       CGG               2       0       0       0       0       0       0       0       0       0       0       0   
       CGC               5       0       0       0       0       0       0       0       0       0       0       0   
       CCA              19       2       0       0       0       0       0       0       0       0       0       0   
       CCT              15       2       0       0       0       0       0       0       0       0       0       0   
       CCG               6       0       0       0       0       0       0       0       0       0       0       0   
-----------------------------------------------------------------------------------------------------------------------
-----------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes in all sequences 
 
  37 AAT +   26 ATA +  27 TAA +  29 ATT +  34 TTA +   18 TAT      =  171 
   9 AAG +    3 AGA +   7 GAA +  14 CTT +   3 TTC +    7 TCT      =   43 
  57 AAC +   60 ACA +  93 CAA +  41 GTT +  62 TTG +   75 TGT      =  388 
  31 ATG +   28 TGA +  39 GAT +  36 CAT +  17 ATC +   32 TCA      =  183 
   9 AGT +    3 GTA +   2 TAG +   3 ACT +   3 CTA +    1 TAC      =   21 
  16 AGG +   18 GGA +  22 GAG +  17 CCT +  20 CTC +   16 TCC      =  109 
  86 AGC +  164 GCA + 230 CAG +  73 GCT + 100 CTG +  196 TGC      =  849 
   6 ACG +    3 CGA +  17 GAC +   8 CGT +   7 GTC +   13 TCG      =   54 
   5 ACC +   21 CCA +  22 CAC +  21 GGT +  17 GTG +   19 TGG      =  105 
   4 GGC +    7 GCG +   2 CGG +  16 GCC +   6 CCG +    5 CGC      =   40 
-----------------------------------------------------------------------------------------

 Frequency distribution of repeats longer than 40 bp 
 
   1 AAT +    8 ATA +   2 TAA +   1 ATT +   1 TTA +    0 TAT      =   13 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    2 ACA +   4 CAA +   0 GTT +   3 TTG +    1 TGT      =   11 
   1 ATG +    1 TGA +   1 GAT +   3 CAT +   0 ATC +    0 TCA      =    6 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    1 GGA +   0 GAG +   0 CCT +   1 CTC +    0 TCC      =    2 
   2 AGC +    8 GCA +   4 CAG +   2 GCT +   4 CTG +    9 TGC      =   29 
   0 ACG +    0 CGA +   0 GAC +   1 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   1 CAC +   0 GGT +   0 GTG +    2 TGG      =    3 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 Total repeats longer than 40 bp = 65 
-----------------------------------------------------------------------------------------

 
Sequence-wise distribution of tri-nucleotide repeats ----------------------------------------------------------------------------------------- Sequence Sequence-length Total-repeats gi|7316100|gb|AE0025 0 0 gi|7292550|gb|AE0034 175489 12 gi|7292521|gb|AE0034 301682 33 gi|7292481|gb|AE0034 319765 30 gi|7292415|gb|AE0034 310450 18 gi|7292381|gb|AE0034 309883 48 gi|7292360|gb|AE0034 317218 35 gi|7292303|gb|AE0034 304734 17 gi|7292275|gb|AE0034 306945 42 gi|7292236|gb|AE0034 304231 34 gi|7292198|gb|AE0034 306364 12 gi|7292168|gb|AE0034 304106 15 gi|7292093|gb|AE0034 303191 18 gi|7292041|gb|AE0034 301109 16 gi|7292017|gb|AE0034 302423 26 gi|7291982|gb|AE0034 301868 26 gi|7291959|gb|AE0034 310120 20 gi|7291904|gb|AE0034 298644 6 gi|7316103|gb|AE0026 0 0 gi|7295475|gb|AE0035 104808 5 gi|7295459|gb|AE0035 286716 26 gi|7295423|gb|AE0035 286782 35 gi|7295378|gb|AE0035 301840 44 gi|7295346|gb|AE0035 277325 18 gi|7295332|gb|AE0035 249584 12 gi|7295317|gb|AE0035 274307 52 gi|7295278|gb|AE0035 285495 18 gi|7295229|gb|AE0035 269454 17 gi|7295193|gb|AE0035 273744 15 gi|7295172|gb|AE0035 286418 44 gi|7295117|gb|AE0035 281146 25 gi|7295064|gb|AE0035 281936 36 gi|7295028|gb|AE0035 285729 26 gi|7294982|gb|AE0035 287145 37 gi|7294927|gb|AE0035 286784 35 gi|7294877|gb|AE0035 285978 25 gi|7294844|gb|AE0035 298675 32 gi|7294827|gb|AE0035 300477 22 gi|7294819|gb|AE0035 244249 36 gi|7294792|gb|AE0035 281396 59 gi|7294749|gb|AE0035 281602 50 gi|7294729|gb|AE0035 281893 26 gi|7294680|gb|AE0035 281869 36 gi|7294631|gb|AE0035 284386 5 gi|7294592|gb|AE0035 289887 23 gi|7294556|gb|AE0035 265547 27 gi|7294528|gb|AE0035 297385 37 gi|7294496|gb|AE0035 271729 14 gi|7294470|gb|AE0035 303715 26 gi|7294453|gb|AE0035 280570 35 gi|7294412|gb|AE0035 341639 39 gi|7294397|gb|AE0035 278748 16 gi|7294375|gb|AE0035 280061 9 gi|7294349|gb|AE0035 275076 28 gi|7294302|gb|AE0035 295377 12 gi|7294291|gb|AE0035 274277 20 gi|7294232|gb|AE0035 279136 15 gi|7294198|gb|AE0035 252224 18 gi|7294145|gb|AE0035 283712 43 gi|7294090|gb|AE0035 279679 20 gi|7294043|gb|AE0035 280887 20 gi|7294009|gb|AE0035 291880 30 gi|7293975|gb|AE0035 335868 17 gi|7293946|gb|AE0035 283337 37 gi|7293918|gb|AE0035 290837 31 gi|7293901|gb|AE0035 271237 6 gi|7293883|gb|AE0035 292222 9 gi|7293842|gb|AE0035 276243 36 gi|7293817|gb|AE0035 280289 19 gi|7293794|gb|AE0035 257672 9 gi|7293747|gb|AE0035 287649 17 gi|7293706|gb|AE0035 273521 24 gi|7293659|gb|AE0035 274668 19 gi|7289390|gb|AE0032 14074 0 gi|7289766|gb|AE0032 20950 0 gi|7288950|gb|AE0029 19560 0 gi|7289605|gb|AE0028 1179 0 gi|7289134|gb|AE0031 3101 1 gi|7316094|gb|AE0026 0 0 gi|7296579|gb|AE0035 242396 10 gi|7296549|gb|AE0035 303162 13 gi|7296525|gb|AE0035 295566 11 gi|7296506|gb|AE0035 318817 16 gi|7296463|gb|AE0035 294257 20 gi|7296405|gb|AE0035 305516 18 gi|7296371|gb|AE0035 313115 36 gi|7296338|gb|AE0035 322667 16 gi|7296281|gb|AE0035 297877 16 gi|7289763|gb|AE0026 3074 0 gi|7289744|gb|AE0027 46468 1 gi|7289859|gb|AE0026 192318 2 gi|7289180|gb|AE0028 12718 0 gi|7289879|gb|AE0026 62039 1 gi|7288924|gb|AE0026 19569 0 gi|7288927|gb|AE0027 27887 0 gi|7289063|gb|AE0027 12661 0 gi|7289072|gb|AE0029 24781 0 gi|7289452|gb|AE0029 14450 0 gi|7289817|gb|AE0031 3855 0 gi|7289498|gb|AE0031 47681 0 gi|7289428|gb|AE0031 1928 0 gi|7289557|gb|AE0031 18252 1 gi|7289011|gb|AE0030 20379 0 gi|7289447|gb|AE0026 111329 1 gi|7289124|gb|AE0026 11578 0 gi|7288933|gb|AE0025 3866 0 gi|7288940|gb|AE0027 17099 0 gi|7289795|gb|AE0030 5331 0 gi|7289101|gb|AE0031 12069 0 gi|7288946|gb|AE0032 15690 0 gi|7289104|gb|AE0031 53962 0 -----------------------------------------------------------------------------------------

© Division of Biochemical Sciences, National Chemical Laboratory, Pune 411008, INDIA