Di-Nucleotide Repeats in Genomic Sequences
Di-Nucleotide Repeats in
Drosophila melanogaster Chromosome-Arm-3L Genomic Scaffolds
Genomic Sequence:..
gi|7316100|gb|AE002584.1|AE002584 Drosophila melanogaster genomic scaffold 142000013386045, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7292550|gb|AE003483.1|AE003483 Drosophila melanogaster genomic scaffold 142000013386045 section 17 of 17, complete sequence
Position Repeat Coverage Repeat
1029 CA * 11 20/22 CA CT CA CA CA CA CA CA CA CA CT
13235 AC * 10 18/20 AC AC AC AC AC AC AC AC GC GC
23038 TG * 10 18/20 TG TG TG CA TG TG TG TG TG TG
31837 AC * 10 18/20 AC AA AC AC AC AC AC AC AC TC
31867 AG * 18 34/36 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG CC AG
39144 CA * 18 33/36 CA CA CT CA CA CT CA CA CA CA CA CA CA CA CA CA CA CT
40547 AT * 10 18/20 AT AT AT AT AT TT AT AT GT AT
41786 CA * 10 18/20 CA CA CA CA CA CG CA CA CG CA
59709 AC * 10 18/20 AC AC AC AC AC AC AC AC TT AC
71010 AC * 11 21/22 AC AC AC AC AC AC AC AC AC AC AT
71851 AC * 11 20/22 AC GC AC AC AC AC TC AC AC AC AC
80908 AT * 10 18/20 AT AT AT AT AT AT AT AT AT CC
97448 CA * 11 20/22 CA CA CA CA CA AA CA CA CA CG CA
121342 CA * 12 22/24 CA CA CA CC CA CA CT CA CA CA CA CA
126044 TG * 11 20/22 TG AG AG TG TG TG TG TG TG TG TG
126889 AC * 10 18/20 AC GC AC AC GC AC AC AC AC AC
127080 CA * 16 29/32 CA GA CA CT CA CA CA CA CA CA CA CA CA CA GA CA
130052 CA * 16 29/32 CA CA CA CA AA CA CA CA CA CA CA CA CA TA CA GA
132835 CA * 11 21/22 CA AA CA CA CA CA CA CA CA CA CA
134108 TG * 11 20/22 TG TG TG TG TG TG TG TG AG TG GG
138068 TG * 11 20/22 TG TG TG TG TG CA TG TG TG TG TG
140331 AT * 15 27/30 AT AG AT AT AG AT AT AT AT AT AT AT AT AT AG
142933 AC * 10 19/20 AC AC AC AC AT AC AC AC AC AC
144818 GA * 10 18/20 GA GA GA GA GA GA GA CC GA GA
145714 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AT AT
156589 AC * 11 20/22 AC AC AC AC AC AC AC GC AC AG AC
160289 TG * 12 22/24 TG TG TG TA TG TG TG TG TG TG TA TG
164561 TG * 12 22/24 TG TG TG TG TG CG TG TG TG AG TG TG
168760 CA * 12 22/24 CA AA CG CA CA CA CA CA CA CA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 175489
Total number of repeats detected.............. 29
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 0 0 1 9 6 6 0 0 0 0 0
15 to 19 1 0 1 0 0 3 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 0 1 1 9 9 6 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 0 TA = 3
1 AG + 1 GA + 0 CT + 0 TC = 2
0 GT + 6 TG + 9 CA + 9 AC = 24
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7292521|gb|AE003482.1|AE003482 Drosophila melanogaster genomic scaffold 142000013386045 section 16 of 17, complete sequence
Position Repeat Coverage Repeat
1175 AT * 10 19/20 AT AG AT AT AT AT AT AT AT AT
7369 AC * 10 18/20 AC AC TC AC AC GC AC AC AC AC
16107 TG * 11 20/22 TG TG TT TG TG TG TG TG TA TG TG
20996 TG * 10 18/20 TG TT TG TG TG TG TG TG TG CG
35125 GT * 13 24/26 GT GA GT GT GT GT GT GT GT GT GT GT AT
47326 GT * 12 22/24 GT CT GT GT GT GT GT GT GT GT GT TT
50068 CA * 11 20/22 CA CA CA CC CA CA CA CA CA CA CT
52481 AT * 10 18/20 AT AT AT AT GT AT GT AT AT AT
53215 TG * 12 22/24 TG TG TG TA TG TG TG TG AG TG TG TG
64996 AT * 11 20/22 AT AT AT AT AT AT AG AC AT AT AT
66199 AG * 11 20/22 AG AG AG AG AG AG AG AG AG CG CG
85481 AC * 10 18/20 AC AC AG AT AC AC AC AC AC AC
85839 AT * 11 20/22 AT AT AT AT AT AT AT CT AT AT AG
100305 TG * 10 18/20 TG TG TG TG TA TG AG TG TG TG
108273 AT * 11 20/22 AT AT AT AT AC AT TT AT AT AT AT
124087 TG * 11 20/22 TG GT TG TG TG TG TG TG TG TG TG
147897 TG * 16 30/32 TG TG TG TG TG TG TG TG TG TG TG TG TG CG GG TG
150798 GT * 10 18/20 GT GT GT GT GT GT GT GG CT GT
158223 TA * 10 18/20 TA TA TA TA TA TA TA TA TC TT
173715 CA * 13 24/26 CA AC CA CA CA CA CA CA CA CA CA CA CA
207352 TA * 10 18/20 TA TA GA TA TA TA GA TA TA TA
216116 AC * 12 22/24 AC TC AC AA AC AC AC AC AC AC AC AC
216650 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TG CA
248950 TA * 10 18/20 TA TC TA TA TA CA TA TA TA TA
251848 GT * 13 24/26 GT GT GT GT GT GT GT GT GT AT GT GT GC
-----------------------------------------------------------------------------------------
Total sequence length......................... 301682
Total number of repeats detected.............. 25
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 3 1 0 3 2 6 4 0 0 0 0
15 to 19 0 0 0 0 0 0 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 3 1 0 3 2 7 4 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 3 TA = 8
1 AG + 0 GA + 0 CT + 0 TC = 1
4 GT + 7 TG + 2 CA + 3 AC = 16
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7292481|gb|AE003481.1|AE003481 Drosophila melanogaster genomic scaffold 142000013386045 section 15 of 17, complete sequence
Position Repeat Coverage Repeat
18324 AT * 10 18/20 AT AT AT AT AT AT AT AA AC AT
36667 AC * 11 20/22 AC AC AC AC AC AC AC AC AT GC AC
45027 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AC AA
53417 AC * 11 20/22 AC AC AC AC AC AC AA GC AC AC AC
53958 AT * 10 18/20 AT AA AT AT AC AT AT AT AT AT
57565 CA * 10 18/20 CA CA CA CA CA CA AG CA CA CA
64651 TG * 12 22/24 TG TG TG AG TG TG TG TG TG TG TC TG
64924 GT * 12 22/24 GT GT GT GT GT GT CT AT GT GT GT GT
67679 TA * 11 20/22 TA TA TA TA TA AA TA TA TA TA CA
68929 AG * 12 22/24 AG TT AG AG AG AG AG AG AG AG AG AG
73836 GT * 11 20/22 GT GT TG GT GT GT GT GT GT GT GT
74077 GA * 10 18/20 GA TA GA GA GG GA GA GA GA GA
108352 AT * 10 18/20 AT AT CC AT AT AT AT AT AT AT
110538 TG * 10 18/20 TG TG TG TG TG TG TG TG TG CC
124101 CT * 11 21/22 CT AT CT CT CT CT CT CT CT CT CT
124402 TC * 10 18/20 TC TC TC GC TC GC TC TC TC TC
125793 CT * 10 18/20 CT CT TC CT CT CT CT CT CT CT
217832 AC * 10 18/20 AC AC AC AC AT AC AC AC AC GC
227215 AT * 12 22/24 AT AT GC AT AT AT AT AT AT AT AT AT
251259 TG * 11 20/22 TG TG TG TG TG CG TG TG TG TG CG
257985 TA * 10 18/20 TA TA TA CA TA TG TA TA TA TA
261925 TG * 11 21/22 TG TT TG TG TG TG TG TG TG TG TG
264195 AT * 11 20/22 AT AT AT AT AT AT AT AT AT TT TT
267903 CT * 10 18/20 CT CT CT CT CT CT CT CT TC CT
270642 TG * 13 24/26 TG TC TG TG TG TG TG TG TG TC TG TG TG
274596 TA * 10 18/20 TA TA TA TA TA TA TA TA TT TT
285265 CA * 10 18/20 CA CA CA CA AA CA CA TA CA CA
295496 AC * 15 27/30 AC AC AC AC AC AC AC AC AC AC AC AG AC AA TC
313172 AG * 11 20/22 AG AG AG AG AA AG AG AG AG CG AG
313631 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CA GG
-----------------------------------------------------------------------------------------
Total sequence length......................... 319765
Total number of repeats detected.............. 30
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 6 3 2 1 3 3 5 2 1 3 0 0
15 to 19 0 0 0 0 1 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 6 3 2 1 4 3 5 2 1 3 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
6 AT + 3 TA = 9
2 AG + 1 GA + 3 CT + 1 TC = 7
2 GT + 5 TG + 3 CA + 4 AC = 14
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7292415|gb|AE003480.1|AE003480 Drosophila melanogaster genomic scaffold 142000013386045 section 14 of 17, complete sequence
Position Repeat Coverage Repeat
2476 TA * 10 18/20 TA TA TA TG TA TA TA TA TA AA
5044 TG * 11 21/22 TG TA TG TG TG TG TG TG TG TG TG
5160 GT * 10 18/20 GT GT GT GC GA GT GT GT GT GT
63170 CA * 10 18/20 CA CG CA CA CA CA CA CA CA AA
68654 TG * 10 18/20 TG TG AG TG TG TG TG TG TG AG
95634 AT * 17 31/34 AT AT AT AT AT AT AT AT GA AT AT AT AT AT AT AC AT
96349 AT * 16 29/32 AT AT AT AT AT AC AT AT AT AT AT AT AT TT AT AA
112624 AC * 12 22/24 AC AC AC AC AC AC AC AC AC GC AC GC
137879 AC * 11 20/22 AC AC AA AA AC AC AC AC AC AC AC
150941 AT * 10 18/20 AT AT AT AT AT AA AT AT AA AT
162544 GT * 10 18/20 GT GC AT GT GT GT GT GT GT GT
182676 TA * 11 21/22 TA TA TA TC TA TA TA TA TA TA TA
183284 AT * 11 20/22 AT TT AT AT AT AT AT GT AT AT AT
183343 TA * 10 19/20 TA TA TA TA TA TA TA TA TC TA
186226 TG * 13 24/26 TG TG TG TG TG CG TG TG TC TG TG TG TG
231235 CA * 11 20/22 CA CT CA CA CA CA CA CA CA GA CA
231257 AC * 11 20/22 AC AG AC AC AC AC AC AC AC AC TC
237733 TC * 10 18/20 TC TC TC TC TC TT TC TC AC TC
256136 CA * 10 18/20 CA CA AA CA GA CA CA CA CA CA
302498 TG * 13 24/26 TG GT TG TG TG TG TG TG TG TG TG TG TG
306313 AT * 13 24/26 AT AT AT AT AT AT AT GT AC AT AT AT AT
306726 GT * 10 18/20 GT GT GT GC GT GT GT GT GA GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 310450
Total number of repeats detected.............. 22
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 3 0 0 3 3 4 3 1 0 0 0
15 to 19 2 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 3 0 0 3 3 4 3 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 3 TA = 8
0 AG + 0 GA + 0 CT + 1 TC = 1
3 GT + 4 TG + 3 CA + 3 AC = 13
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7292381|gb|AE003479.1|AE003479 Drosophila melanogaster genomic scaffold 142000013386045 section 13 of 17, complete sequence
Position Repeat Coverage Repeat
45857 TA * 10 19/20 TA CA TA TA TA TA TA TA TA TA
51712 AC * 11 20/22 AC AC AC GC TC AC AC AC AC AC AC
65276 TG * 12 22/24 TG TG TG TG TG TG CA TG TG TG TG TG
70402 CA * 10 18/20 CA CA CA CA CA CA CA CA CA TC
70647 AG * 15 28/30 AG AG AC AG AG AG AG AG AG AG AG AG AG AG CG
92810 AT * 11 20/22 AT AT AA AT AT AT AT AC AT AT AT
139823 CA * 11 20/22 CA CA CA CA CA CA CA CA CT CA TA
141893 CT * 12 22/24 CT CT CT CT CT CT CT CT CT CT CG CG
153844 CA * 12 23/24 CA CA CA CA CA CA CA CA CA AA CA CA
155996 TA * 10 18/20 TA CA AA TA TA TA TA TA TA TA
157757 CA * 10 18/20 CA CA CA CA CA CA GG CA CA CA
175052 TA * 12 22/24 TA AA TA TA TA AA TA TA TA TA TA TA
183824 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TT CG
190572 CA * 11 20/22 CA CA CA CA CA CA CA CA AA CG CA
190728 GT * 16 29/32 GT GT GC AT GT GT GT GT GT GT GT GT GT GT GT GC
193150 AC * 11 20/22 AC AC AC AC AT AC GC AC AC AC AC
201385 AC * 11 20/22 AC GC AC AC AC AC AC AC AG AC AC
225235 TG * 10 18/20 TG GG TG TG TA TG TG TG TG TG
226221 AC * 11 20/22 AC AC AC AA GC AC AC AC AC AC AC
231121 AC * 11 20/22 AC AC GT AC AC AC AC AC AC AC AC
232487 AT * 12 22/24 AT AT AT AT AT AT AT AT AT AT AT TG
240020 TC * 10 19/20 TC TT TC TC TC TC TC TC TC TC
263505 GT * 11 21/22 GT GT GT GT GT GT GT GT GT GC GT
267014 GT * 14 26/28 GT GT GT GT GT GT GT GT GT GT GT GT TT GC
267236 TG * 12 22/24 TG TG TG TG TG TG TG GG AG TG TG TG
277193 GA * 10 18/20 GA GA GA GT GA GA GA GA AA GA
277604 AG * 11 20/22 AG AG AG AG AG AG AG AG AG AG TT
277807 TC * 13 24/26 TC CC TC TC TC TG TC TC TC TC TC TC TC
280504 AT * 12 22/24 AT AC AT AT AT AT AT AT AT AT TT AT
282315 AC * 12 22/24 AC AC AC AC AC AC TC AC AC AT AC AC
284403 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC AC AG AT
293899 GA * 10 18/20 GA GA GA GA CA GA GA TA GA GA
298287 CA * 10 18/20 CA CA CA CA CA GA CA GA CA CA
305234 AC * 10 19/20 AC CC AC AC AC AC AC AC AC AC
306181 TA * 10 18/20 TA TA TA TA TA TA TA TA TA GC
306891 AC * 10 18/20 AC AC AC AT AC AC AC AC AC GC
-----------------------------------------------------------------------------------------
Total sequence length......................... 309883
Total number of repeats detected.............. 36
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 4 1 2 9 6 4 2 2 1 0 0
15 to 19 0 0 1 0 0 0 0 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 4 2 2 9 6 4 3 2 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 4 TA = 7
2 AG + 2 GA + 1 CT + 2 TC = 7
3 GT + 4 TG + 6 CA + 9 AC = 22
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7292360|gb|AE003478.1|AE003478 Drosophila melanogaster genomic scaffold 142000013386045 section 12 of 17, complete sequence
Position Repeat Coverage Repeat
22133 GT * 11 20/22 GT GT GT GT GT GT GT GT AT GT GC
32850 TA * 11 20/22 TA TA TA TA TA TA GT TA TA TA TA
37253 AT * 11 20/22 AT AT GT AT AT AT AT AT AT AT AG
40334 GT * 10 18/20 GT GT GT GT GT GT GT GT GT TA
40499 GT * 11 20/22 GT GT GA GT GT GT GT GT GT GT GC
48667 TA * 10 18/20 TA TA TA TG TA CA TA TA TA TA
58641 TG * 11 20/22 TG TG CG TG TG TG TG TG TG TG CG
65363 TG * 12 22/24 TG GC TG TG TG TG TG TG TG TG TG TG
81582 TG * 10 18/20 TG CT TG TG TG TG TG TG TG TG
84259 AG * 15 27/30 AG AG AG AG AG AG AG AG AG AG AG AC AG TG CG
86717 TG * 12 22/24 TG TG TG TG TG TG TG TG TG CG TT TG
86925 GT * 11 21/22 GT GT GT GT GT GT GT GT GT GT GG
104138 GT * 10 18/20 GT GT GG GT GT GT GT GT GC GT
107707 AC * 10 19/20 AC AA AC AC AC AC AC AC AC AC
109117 TG * 16 29/32 TG TG TG TG TG TG TG TG TG TG TG TG CG TG TG GT
131891 TG * 16 30/32 TG TG TG TG TG TG TG TG TG TG TG TG TC TG TG GG
147259 CA * 12 22/24 CA CG CA CA CA CA CA CA CA CA CA CG
158102 AT * 10 19/20 AT AT AT AT AT AT AT AT AT TT
172207 AC * 11 20/22 AC AC AC AC AC AC AC AC TC AT AC
178035 AT * 13 24/26 AT AT AT AC AT AT AT AT AT AT GT AT AT
192206 TA * 10 18/20 TA TA TA TA TA TG TA TA TA CA
200940 AC * 11 20/22 AC CC AC AC AC AC AC AC AC AC TC
203284 TA * 16 29/32 TA TA TA AA TA TA TA TA TA TA TA TA TA TG TA TG
214173 TG * 11 20/22 TG TC TC TG TG TG TG TG TG TG TG
272719 GT * 10 18/20 GT TC GT GT GT GT GT GT GT GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 317218
Total number of repeats detected.............. 25
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 3 0 0 3 1 5 6 0 0 0 0
15 to 19 0 1 1 0 0 0 2 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 4 1 0 3 1 7 6 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 4 TA = 7
1 AG + 0 GA + 0 CT + 0 TC = 1
6 GT + 7 TG + 1 CA + 3 AC = 17
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7292303|gb|AE003477.1|AE003477 Drosophila melanogaster genomic scaffold 142000013386045 section 11 of 17, complete sequence
Position Repeat Coverage Repeat
7263 TG * 10 19/20 TG TG TT TG TG TG TG TG TG TG
9850 GA * 10 18/20 GA GA GT GA GA GA GA GA GG GA
17922 TA * 10 18/20 TA CA TA TA TA TG TA TA TA TA
64554 TA * 12 22/24 TA TT TA TA TA TA TA AA TA TA TA TA
88455 TC * 10 18/20 TC GC TG TC TC TC TC TC TC TC
90145 AT * 15 27/30 AT AT AC AT AC AT AT AT AT AT AT AT AT AT AG
90814 AT * 12 22/24 AT AT AT AT GT AT AT AT AT TT AT AT
159640 AC * 11 20/22 AC AC AC AC AC AC CC AT AC AC AC
168522 AC * 10 18/20 AC AC AC AC AC AC AC AC GC AG
171973 AT * 13 24/26 AT AC AT AT AT AA AT AT AT AT AT AT AT
180871 TG * 10 18/20 TG TG CG TG TG TG TG TG TG TT
182358 AC * 11 20/22 AC AC AC AC GC AC GC AC AC AC AC
182732 CT * 10 18/20 CT CT CT CT CT CG CT CG CT CT
190350 GT * 12 23/24 GT GT GT GT GT GT GT GT GT GT GT GC
194324 TA * 23 42/46 TA TA TT TA TA TA TA CA TA TA TA TA TA TA TA AA TA TA TA CA TA TA TA
203337 TC * 12 22/24 TC TC TC TC TC TC TC TC TC TC TC AG
206111 AG * 13 24/26 AG AA AG AG AG AG AG AG GG AG AG AG AG
244135 TA * 15 27/30 TA TA TA TA CA TA TA AA TA TA TA TA TA TA TT
-----------------------------------------------------------------------------------------
Total sequence length......................... 304734
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 2 1 1 3 0 2 1 2 1 0 0
15 to 19 1 1 0 0 0 0 0 0 0 0 0 0
20 to 24 0 1 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 4 1 1 3 0 2 1 2 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 4 TA = 7
1 AG + 1 GA + 1 CT + 2 TC = 5
1 GT + 2 TG + 0 CA + 3 AC = 6
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7292275|gb|AE003476.1|AE003476 Drosophila melanogaster genomic scaffold 142000013386045 section 10 of 17, complete sequence
Position Repeat Coverage Repeat
2961 AT * 10 18/20 AT AA AA AT AT AT AT AT AT AT
9332 GT * 13 24/26 GT GG TT GT GT GT GT GT GT GT GT GT GT
23706 AT * 10 18/20 AT AA AT AT AT AT AT AT AT AA
30188 GT * 11 21/22 GT GT GT GT GT GT GT GT GT GT TT
39059 TA * 11 21/22 TA TA TA TA TA TA TA TA TA TA CA
43844 TG * 15 27/30 TG AG TG TG TG TG TG TG TG TG TG GG TG TG TT
51389 GA * 10 18/20 GA GA GA GA GA GA GA GA GG GG
71494 AC * 10 18/20 AC AC AC AC GC AC AC AC AC AT
71880 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC AC AT TC
75450 TG * 11 20/22 TG AG TG TG TG TG TG TG TG TG AG
76367 TG * 11 20/22 TG TG TG TG TG TG TG TG AG TG TT
85710 AC * 10 18/20 AC AT TC AC AC AC AC AC AC AC
87519 AG * 16 29/32 AG AG AA AG AG AA AG AG AG AG AG AG AG AG AG CG
88141 AC * 10 18/20 AC AC AC AG AT AC AC AC AC AC
108952 TG * 10 19/20 TG TG TG GG TG TG TG TG TG TG
116194 CA * 10 19/20 CA CA CA CA CA GA CA CA CA CA
118405 AC * 12 22/24 AC AC AC AC AC AC AC AT AC AC AT AC
122618 CA * 10 19/20 CA CA CA CA CA CA AA CA CA CA
122687 AC * 15 27/30 AC AC AC AA GC AC AC AC AC AC AC AC AC AC AG
139622 AG * 10 18/20 AG AG CG AG AG AG AG TG AG AG
146155 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AC AC TA
152443 TA * 11 20/22 TA TA TT TA TA TA TA TA TA TA TT
156906 AC * 11 20/22 AC GC AC AC AC AC AC AC AC AC AT
157253 AG * 10 18/20 AG AG AG AG AG AG AG AG AG TT
170184 AT * 12 22/24 AT AT AT AT AT AT AT AA AT AT AT AC
179230 AC * 12 22/24 AC AC TT AC AC AC AC AC AC AC AC AC
185521 AC * 11 20/22 AC AC AG AC AC AC AC AC AC AC GC
200352 AC * 14 26/28 AC AC AC AC AC AC AC AC AC AC AC AC AA AG
217445 GT * 13 24/26 GT GT GT GT GT GT GT AT GT GT GT GC GT
303167 GT * 10 18/20 GT GC GT GT GT GT GC GT GT GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 306945
Total number of repeats detected.............. 30
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 2 2 1 10 2 3 4 0 0 0 0
15 to 19 0 0 1 0 1 0 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 2 3 1 11 2 4 4 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 2 TA = 5
3 AG + 1 GA + 0 CT + 0 TC = 4
4 GT + 4 TG + 2 CA + 11 AC = 21
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7292236|gb|AE003475.1|AE003475 Drosophila melanogaster genomic scaffold 142000013386045 section 9 of 17, complete sequence
Position Repeat Coverage Repeat
9645 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG GT
16168 TA * 10 18/20 TA TA TA TA AA TA TA TA TA AA
39601 CA * 11 21/22 CA CA CA CA CA CA CA CA CA CA CC
110634 AT * 10 18/20 AT AT AT AT AT AT AT AT AT GA
113088 TA * 17 31/34 TA TA TA GA TA TA TA TA TA TA TA TA CA TA TA TT TA
126805 CA * 11 20/22 CA CA CA CA CA CA CA CA CT CA CT
133178 TC * 10 18/20 TC TC GC TC TC TG TC TC TC TC
137226 TC * 13 24/26 TC CC TC TC TC TC TC TC TG TC TC TC TC
161247 GT * 11 20/22 GT GT GA GT GT GT GT GA GT GT GT
163771 CA * 14 26/28 CA CA CA CA CA CA CA CA CA CA CA CG CG CA
165731 TG * 11 20/22 TG TG TG TG TG TG TG TG TG GG TT
167402 CA * 13 24/26 CA CA CA CA CA CA CA CA CT CA CA CA GA
172261 TA * 15 27/30 TA TA TA TG TA TA TA TA TA TA TG TA TA TA TG
182615 CA * 10 18/20 CA CA CA CA CA CA CA TG CA CA
219616 TA * 12 22/24 TA TT TA TA TA TA TA TA TA TA TA TT
225116 TG * 11 20/22 TG TG TA TA TG TG TG TG TG TG TG
233322 GT * 10 18/20 GT CT TT GT GT GT GT GT GT GT
238937 TG * 13 24/26 TG CG TG TG AG TG TG TG TG TG TG TG TG
247930 GT * 17 31/34 GT GG AT GT GT GT GT GT GT GT GT GT GT GT GT GT GG
251602 CA * 14 26/28 CA CT CG CA CA CA CA CA CA CA CA CA CA CA
266806 TG * 11 20/22 TG TT TG TG TG TG TG TG TG TT TG
272398 AT * 13 24/26 AT AT AT AC AT AT AT AT AT AT AT AT AC
279567 GT * 11 20/22 GT GT AA GT GT GT GT GT GT GT GT
291988 AT * 16 29/32 AT AT AT AT AT AT CT AT AT AT AT AT AT AT CT AG
294287 AC * 10 19/20 AC AC AC AC AC AC AC AC AC AG
-----------------------------------------------------------------------------------------
Total sequence length......................... 304231
Total number of repeats detected.............. 25
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 2 0 0 1 6 5 3 2 0 0 0
15 to 19 1 2 0 0 0 0 0 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 4 0 0 1 6 5 4 2 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 4 TA = 7
0 AG + 0 GA + 0 CT + 2 TC = 2
4 GT + 5 TG + 6 CA + 1 AC = 16
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7292198|gb|AE003474.1|AE003474 Drosophila melanogaster genomic scaffold 142000013386045 section 8 of 17, complete sequence
Position Repeat Coverage Repeat
34403 TG * 13 24/26 TG TG TG TG TG TG TG TG TG CG TG TG TA
36422 TC * 16 29/32 TC CC TC TC TC TC TC TC TC TC TC TC TC TC TG GC
45469 TA * 11 20/22 TA AA TA CA TA TA TA TA TA TA TA
63927 CT * 11 20/22 CT CT CT CT CT CT CT CT CT CG CA
73932 CA * 11 20/22 CA CC CA CA CA CA CA CA CA CA TA
74350 TA * 10 18/20 TA TA TA TA TA TA TA CA TA CA
106868 AT * 15 27/30 AT AG AT AT AT AT AT AT AT AT AT AT TT AT TT
136651 CT * 11 20/22 CT CT CT CT CT CT CT CT CT GT TT
179571 GT * 13 24/26 GT GC GT TT GT GT GT GT GT GT GT GT GT
192623 AT * 10 19/20 AT AT AT AT AT AT AT AT AT TT
212924 AC * 14 26/28 AC AC AC AC AC AC AC AC AC AC AC TC AC AT
281502 AG * 10 18/20 AG AG AG CG AG AG CG AG AG AG
281623 AC * 10 19/20 AC AC AC AC AC AC AC AC AA AC
-----------------------------------------------------------------------------------------
Total sequence length......................... 306364
Total number of repeats detected.............. 13
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 2 1 0 2 1 1 1 0 2 0 0
15 to 19 1 0 0 0 0 0 0 0 1 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 2 1 0 2 1 1 1 1 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 2 TA = 4
1 AG + 0 GA + 2 CT + 1 TC = 4
1 GT + 1 TG + 1 CA + 2 AC = 5
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7292168|gb|AE003473.1|AE003473 Drosophila melanogaster genomic scaffold 142000013386045 section 7 of 17, complete sequence
Position Repeat Coverage Repeat
2736 TG * 11 20/22 TG TG TG TG TG TG TG TG TG AG GG
8422 AT * 11 20/22 AT AG TT AT AT AT AT AT AT AT AT
21974 GT * 10 18/20 GT GT GT TT GT GT GT GT GA GT
22006 TG * 10 19/20 TG TG TG TG TG TG TG TG TG GG
22511 AT * 10 18/20 AT AT GT AG AT AT AT AT AT AT
23688 GT * 11 20/22 GT GT GT GT GT GT TA GT GT GT GT
42374 TG * 13 25/26 TG TG TG TG TG TG TG TG TG TG AG TG TG
47711 CT * 11 20/22 CT CC AT CT CT CT CT CT CT CT CT
55974 CA * 10 18/20 CA GA CA CA CA CA CA CA CA CT
81921 GA * 13 24/26 GA GA GA GA GA GA GA GA GA GA GA GC GG
83228 CA * 10 18/20 CA CG CA CG CA CA CA CA CA CA
83285 AG * 12 22/24 AG AG AG AG GA AG AG AG AG AG AG AG
85479 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA CA TT
86068 GT * 12 22/24 GT GT GT GT GA GT GT GT GT GT GT GG
88768 TA * 19 35/38 TA TG TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA CT
91232 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG TG GA
92283 TA * 11 20/22 TA TA TA TA TA TA TA TG TA TA TG
142451 AC * 12 22/24 AC AC AC AC AC AC AC AC CC AT AC AC
191324 CA * 18 33/36 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CT TA CA AA
195506 TA * 11 20/22 TA TG TA TA AA TA TA TA TA TA TA
195967 TA * 11 20/22 TA TA TA TA TA TA TA TA TG TA TT
266554 AT * 11 20/22 AT AT AT AT AT AT AT AT AT GC AT
272972 AC * 12 22/24 AC GC AC TC AC AC AC AC AC AC AC AC
302604 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GT GT GA GC
-----------------------------------------------------------------------------------------
Total sequence length......................... 304106
Total number of repeats detected.............. 24
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 3 1 1 2 3 4 4 0 1 0 0
15 to 19 0 1 0 0 0 1 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 4 1 1 2 4 4 4 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 4 TA = 7
1 AG + 1 GA + 1 CT + 0 TC = 3
4 GT + 4 TG + 4 CA + 2 AC = 14
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7292093|gb|AE003472.1|AE003472 Drosophila melanogaster genomic scaffold 142000013386045 section 6 of 17, complete sequence
Position Repeat Coverage Repeat
18196 TG * 10 19/20 TG TG TG TG TG TG TG TG TG GG
35049 TG * 11 20/22 TG TG TG TG TT TG TG TG TG CG TG
42555 GT * 10 19/20 GT GT GT GT GC GT GT GT GT GT
91858 GT * 20 36/40 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GA GT GT CT CT TT
93544 GT * 11 20/22 GT CC GT GT GT GT GT GT GT GT GT
97966 TA * 12 22/24 TA TG GA TA TA TA TA TA TA TA TA TA
102384 TC * 18 33/36 TC TC TC TC TC TC TC TC TG TT TC TC TC TC TC TC TG TC
154430 TG * 10 18/20 TG TG TG TG CG CG TG TG TG TG
195988 AT * 11 20/22 AT AT AT AT AT AG CT AT AT AT AT
296183 AT * 13 24/26 AT AT AT AT AC AA AT AT AT AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 303191
Total number of repeats detected.............. 10
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 1 0 0 0 0 3 2 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 1 0 0 0
20 to 24 0 0 0 0 0 0 0 1 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 1 0 0 0 0 3 3 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 1 TA = 3
0 AG + 0 GA + 0 CT + 1 TC = 1
3 GT + 3 TG + 0 CA + 0 AC = 6
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7292041|gb|AE003471.1|AE003471 Drosophila melanogaster genomic scaffold 142000013386045 section 5 of 17, complete sequence
Position Repeat Coverage Repeat
13087 GT * 10 18/20 GT AT GC GT GT GT GT GT GT GT
24402 TA * 11 20/22 TA AA TA TA TA TG TA TA TA TA TA
32042 AG * 16 29/32 AG AG AG AC AG AG AG AG AG AG AG AG AG AG AT AT
44305 AT * 10 18/20 AT AC AT AT AC AT AT AT AT AT
49526 CA * 10 19/20 CA CA CA CA CA CA CA CA CC CA
96897 CA * 10 18/20 CA CA CA CA CA CA CA TA CA CC
101936 AG * 10 18/20 AG AG AG GG TG AG AG AG AG AG
132576 GA * 11 20/22 GA GA GA GC GA GA GC GA GA GA GA
136843 CA * 12 22/24 CA CA CA CA CA CA AA CA CA CG CA CA
139580 GT * 10 18/20 GT GT GT GT GT GT GT GT GT TG
142990 AT * 10 18/20 AT AT AT AT AT GT AC AT AT AT
169934 GT * 16 30/32 GT GT GT AT GT GT GT GT GT GT GT TT GT GT GT GT
191175 CA * 15 28/30 CA CA TA GA CA CA CA CA CA CA CA CA CA CA CA
197989 TG * 11 21/22 TG TG TG TG TG TG TG TG TG TG TC
234583 AC * 13 25/26 AC AC AC AC AC AC AC AC AC AC AC AC TC
235023 AT * 16 29/32 AT AT AT AT AT AC AT AT AT AT AT AT AT AT AT CG
239175 CA * 15 28/30 CA CA CA CA CA CA CA CA CA TA CA CA CA CA CT
251976 GA * 17 31/34 GA GA GA GA GA GA GA GA GA GA GA GA CA TA GA GG GA
253279 CA * 12 22/24 CA CA CA CT TA CA CA CA CA CA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 301109
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 1 1 1 1 4 1 2 0 0 0 0
15 to 19 1 0 1 1 0 2 0 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 1 2 2 1 6 1 3 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 1 TA = 4
2 AG + 2 GA + 0 CT + 0 TC = 4
3 GT + 1 TG + 6 CA + 1 AC = 11
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7292017|gb|AE003470.1|AE003470 Drosophila melanogaster genomic scaffold 142000013386045 section 4 of 17, complete sequence
Position Repeat Coverage Repeat
4119 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG GT
4397 TG * 10 18/20 TG CG TA TG TG TG TG TG TG TG
7444 AT * 10 18/20 AT AT AC AT AT AT AT AT AC AT
8268 CA * 11 21/22 CA CA CA CA CA CA CA CA CA CA TA
8309 AC * 10 19/20 AC AC AC AC AC AC AC AC AC AG
26338 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GC GA GT GT
27114 CA * 13 24/26 CA CA CA CA CT GA CA CA CA CA CA CA CA
33253 CA * 10 18/20 CA CG CA CA CC CA CA CA CA CA
39939 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT GA GG
41982 CT * 12 22/24 CT TT CT CT CT CT CT CT CT CT CT CC
45772 CA * 17 31/34 CA CA CA CA CA CA CA CA CA CA CA CA GG CA TA CA CA
55627 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GT GT AT CT
68811 TA * 10 18/20 TA TA TA TA TA TA TA TA TT GA
70406 AT * 17 31/34 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GA AC
80230 CA * 23 42/46 CA CG CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CG GG
88299 GT * 18 33/36 GT GA GT GT GT GT GT GT GT GT GT GT GT GT GT GT GA GA
103095 GT * 12 22/24 GT GT GT GC GT GT GT GT GT GT GG GT
110648 TG * 12 22/24 TG CG CG TG TG TG TG TG TG TG TG TG
115444 TG * 16 30/32 TG TG TC TG TG TG TG TG TG TG TG TG TG TG TG CG
137022 AT * 11 20/22 AT AT AT AT AT AT AA AT AT TT AT
139708 GT * 10 18/20 GT GT GT AT GT AT GT GT GT GT
139772 TG * 10 18/20 TG TC TG TG TG TG TG TG TT TG
139803 GT * 12 23/24 GT GT GT AT GT GT GT GT GT GT GT GT
144103 CA * 13 24/26 CA CT CA CA CA CA CA CA GA CA CA CA CA
145882 CA * 13 25/26 CA CA CT CA CA CA CA CA CA CA CA CA CA
149251 TG * 15 28/30 TG TG CG TG TG TG TG TG GG TG TG TG TG TG TG
149429 AC * 10 19/20 AC AC AC AC AC AC AC AC AC AA
152385 AT * 12 22/24 AT AT GT AT AT AT AT AT AT AT AT CT
153651 CT * 11 20/22 CT CA CT CT CT CT CT CT CG CT CT
157430 TG * 15 28/30 TG AG TG TG TG TG TG TG TG TG TG TG AG TG TG
159075 CA * 12 22/24 CA CA CA CA CT CA CA CA CA CA CA CG
167751 TC * 13 24/26 TC TC TC TC TC TC TC TC TC TG CC TC TC
169687 TG * 22 40/44 TG TG TG TG TG TG TG TG TG TG TG TG TG TC TG GG CG TG TG TG TA TG
177592 CA * 12 22/24 CA CT CA CA CA CA CG CA CA CA CA CA
186512 AG * 10 18/20 AG AG AG AG AG AG AG AC AA AG
192733 TG * 12 22/24 TG TG TG TG CG TG TG CG TG TG TG TG
196278 CT * 10 18/20 CT CT AT CT CT CT CT CT CT CG
206726 GT * 10 18/20 GT GT GT GT GT GT GT GA GT GG
206850 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CG CA TA
207039 CA * 10 18/20 CA AA TA CA CA CA CA CA CA CA
207081 CA * 10 18/20 CA CC AA CA CA CA CA CA CA CA
208949 GT * 17 31/34 GT GT GT GT GC AT GT GT GT GT GT GT GT GT GT GT GA
209850 TA * 11 20/22 TA TA TA TA TA TA TG TA TG TA TA
210121 GT * 10 18/20 GT AT GT GT GT GG GT GT GT GT
216418 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG CC
217251 TG * 13 24/26 TG GC TG TG TG TG TG TG TG TG TG TG TG
218772 TG * 22 40/44 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG GG TG TG TG GG GC
219667 GT * 11 21/22 GT GT GT GT GT GT GT GT GT GT GC
224360 AT * 10 18/20 AT AT AT AT AT AA AT AC AT AT
244941 TA * 10 18/20 TA TA TA CA TA CA TA TA TA TA
244973 AT * 11 20/22 AT AT AC AT AT AT AT TT AT AT AT
248575 AT * 16 29/32 AT AT AT CT AT AT AT AT AT AT AT AA AT AT AT AC
253007 TA * 15 27/30 TA AA TA TA TA TA TA TA TA TA TA TA TA GA AA
257789 GT * 10 19/20 GT GT GT AT GT GT GT GT GT GT
265973 AG * 10 18/20 AG CG AG AG AG AG AG AG AG AA
-----------------------------------------------------------------------------------------
Total sequence length......................... 302423
Total number of repeats detected.............. 55
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 3 2 0 2 10 7 10 1 3 0 0
15 to 19 2 1 0 0 0 1 3 2 0 0 0 0
20 to 24 0 0 0 0 0 1 2 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 7 4 2 0 2 12 12 12 1 3 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
7 AT + 4 TA = 11
2 AG + 0 GA + 3 CT + 1 TC = 6
12 GT + 12 TG + 12 CA + 2 AC = 38
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7291982|gb|AE003469.1|AE003469 Drosophila melanogaster genomic scaffold 142000013386045 section 3 of 17, complete sequence
Position Repeat Coverage Repeat
535 GT * 10 19/20 GT GT GC GT GT GT GT GT GT GT
5073 AT * 10 18/20 AT AT AT GT AT GT AT AT AT AT
11543 GT * 13 25/26 GT GT GT GT GT GT GT GT GT GT GT GC GT
12015 AC * 11 20/22 AC AC AC AC AC AC AC AC GC AC GC
19629 TA * 13 24/26 TA TA CA TA TA TA TA TA TA TA TA TT TA
55069 TG * 10 19/20 TG TG TG TG TG TG TG TG GG TG
75971 AT * 10 18/20 AT AT AT AT AT AT AT AT AG CT
96242 CT * 13 24/26 CT CT CT CT TT CT CT CT CT CT CT CT GT
105080 AC * 12 22/24 AC GA AC AC AC AC AC AC AC AC AC AC
123458 CA * 11 20/22 CA CA CA CA CT CG CA CA CA CA CA
124076 AC * 11 20/22 AC AC GC AC AC AC AC AC AC AC AG
189477 CA * 10 19/20 CA CA CA CA CA CA CA CA CA CG
243708 TG * 10 18/20 TG TG TG CG TG TG TG TG AG TG
249527 TA * 13 24/26 TA TA TA TA TA TA TA TA TG TA TA TA TG
265238 AT * 10 18/20 AT CT AC AT AT AT AT AT AT AT
280176 GT * 10 18/20 GT GT GT AT GT GT GT GT GT GG
286290 TG * 11 20/22 TG TA TA TG TG TG TG TG TG TG TG
286325 TG * 14 26/28 TG TG TG TG TG TG CG TG TG TA TG TG TG TG
288186 GT * 14 26/28 GT GT GT GT GT GT GT GT GT CT GT GT GC GT
290336 GT * 10 18/20 GT AT GT GT GT GT GT GT GT TT
292263 AC * 11 20/22 AC AC AT AC TC AC AC AC AC AC AC
292307 TG * 13 24/26 TG TT TG TG TG TG TG TG TG TG TT TG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 301868
Total number of repeats detected.............. 22
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 2 0 0 4 2 5 5 0 1 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 2 0 0 4 2 5 5 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 2 TA = 5
0 AG + 0 GA + 1 CT + 0 TC = 1
5 GT + 5 TG + 2 CA + 4 AC = 16
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7291959|gb|AE003468.1|AE003468 Drosophila melanogaster genomic scaffold 142000013386045 section 2 of 17, complete sequence
Position Repeat Coverage Repeat
1708 CA * 10 18/20 CA GA CA CA CA CA CA CA CA CG
60310 AG * 16 29/32 AG AG AG AG TG GG AG AG AG AG AG AG AG AG AG CG
70210 GT * 13 24/26 GT GT GT GT GT GT AT AT GT GT GT GT GT
90736 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
90760 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
90784 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
90808 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
90832 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
90856 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
90880 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
90904 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
90928 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
91480 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
91504 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
91528 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
91552 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
91576 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
91600 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
91624 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
91648 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
91672 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
91696 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
91720 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
91744 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
91768 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
91792 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
91816 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
175230 CT * 15 27/30 CT CT CT CT CT CT CT CT CG GT CT CT CT CT TT
202241 TG * 14 26/28 TG TG TG TG TG TG TG TG TG TG TG TG CG GG
226765 CT * 11 20/22 CT CT CT CT CT CT CT CT CT CT TC
228807 TG * 12 22/24 TG TG TG TG TG TG AG TG TG TG TG CG
242499 AT * 11 20/22 AT AT AT AT AT AT AT AC AT AT GT
250720 GA * 11 20/22 GA GA GA GA GA GA GA GA GA GC AA
304652 GT * 11 20/22 GT GT GT GT GT GT GT GT GT GC GG
309351 CA * 10 19/20 CA CA CA CG CA CA CA CA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 310120
Total number of repeats detected.............. 35
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 10 15 0 1 0 2 2 2 0 1 0 0
15 to 19 0 0 1 0 0 0 0 0 0 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 10 15 1 1 0 2 2 2 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
10 AT + 15 TA = 25
1 AG + 1 GA + 2 CT + 0 TC = 4
2 GT + 2 TG + 2 CA + 0 AC = 6
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7291904|gb|AE003467.1|AE003467 Drosophila melanogaster genomic scaffold 142000013386045 section 1 of 17, complete sequence
Position Repeat Coverage Repeat
7305 AG * 12 22/24 AG AC AG AG AG AG AG AG AG AG AA AG
98813 TA * 10 18/20 TA TA TG TA TT TA TA TA TA TA
112095 CT * 21 39/42 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CA CT CT CT CT CT TC
188436 AT * 12 22/24 AT AT GT AT AC AT AT AT AT AT AT AT
248719 GT * 10 19/20 GT GT GT GT GT GT GT GT AT GT
285931 AT * 10 18/20 AT AA AT AT AT AT AT AT TT AT
291673 CA * 10 18/20 CA CA CA CA CA CA CA CA CG CT
298422 TA * 12 22/24 TA TT TA TA TA TA TA TA AA TA TA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 298644
Total number of repeats detected.............. 8
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 2 1 0 0 1 0 1 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 1 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 2 1 0 0 1 0 1 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 2 TA = 4
1 AG + 0 GA + 1 CT + 0 TC = 2
1 GT + 0 TG + 1 CA + 0 AC = 2
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7316103|gb|AE002602.1|AE002602 Drosophila melanogaster genomic scaffold 142000013386050, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295475|gb|AE003567.1|AE003567 Drosophila melanogaster genomic scaffold 142000013386050 section 54 of 54, complete sequence
Position Repeat Coverage Repeat
1181 CA * 15 27/30 CA CA CA CA CA CA CA CA CA CA GG CA CA CA CG
5686 TG * 12 22/24 TG TT TG TG TG TT TG TG TG TG TG TG
18112 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG CG GG
20613 TG * 10 18/20 TG TA TG CG TG TG TG TG TG TG
23236 GT * 12 22/24 GT GT GT GC GT AT GT GT GT GT GT GT
24114 TA * 10 18/20 TA TA CA TA TA TG TA TA TA TA
27318 GT * 16 29/32 GT TT GT GT GT GT GT GT GT GT GT GA GT GT GT GC
29978 GT * 10 18/20 GT GT GT GT GT GT GT GT GT CG
35011 CT * 12 22/24 CT CT CC CT CT CT CT CT CT CT CT TT
35811 AC * 10 18/20 AC AC AC AC AC AC AC AC CC CC
38446 AC * 12 22/24 AC GC AC AC AC AC AC AC AC AC AC GC
43837 TC * 13 24/26 TC TT TC TC TC TC TC TC TC TC TC TC TA
51777 AT * 10 18/20 AT AT AT AT AT GT AC AT AT AT
61752 AT * 11 20/22 AT AT AT TT AT AT AT AT AT TT AT
69633 AC * 12 22/24 AC AC AC AC AC AC AC AC TG AC AC AC
69999 TA * 16 29/32 TA TA TA TA TA TA CA TA TA TA TA TA TA TA AA AA
73938 AT * 10 18/20 AT AT AT AC AT AT TT AT AT AT
78524 CA * 11 20/22 CA CA AA CA CA CA AA CA CA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 104808
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 1 0 0 3 1 3 2 1 1 0 0
15 to 19 0 1 0 0 0 1 0 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 2 0 0 3 2 3 3 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 2 TA = 5
0 AG + 0 GA + 1 CT + 1 TC = 2
3 GT + 3 TG + 2 CA + 3 AC = 11
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295459|gb|AE003566.1|AE003566 Drosophila melanogaster genomic scaffold 142000013386050 section 53 of 54, complete sequence
Position Repeat Coverage Repeat
15389 AC * 13 24/26 AC AC GC AC AC AC AC GC AC AC AC AC AC
17570 AT * 10 18/20 AT AT GT AT AT CT AT AT AT AT
21968 CA * 10 18/20 CA CA CA AA CA CA CC CA CA CA
65175 CA * 28 51/56 CA TA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CT CA AA GT CA CA
67650 CA * 12 22/24 CA CA CA CA CA CA CA CA CA TA CG CA
72191 AT * 14 26/28 AT AT AT AT AT AT AT AT AC GT AT AT AT AT
79080 GT * 11 20/22 GT GT GT GT AA GT GT GT GT GT GT
81025 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AC AC GG
110614 AT * 11 20/22 AT AT AT AT TT AT AT AT AT AT TT
112695 TG * 11 20/22 TG TG TG TA TG TG TG TG TG AG TG
115727 AC * 11 20/22 AC TC AC TC AC AC AC AC AC AC AC
118809 CT * 13 24/26 CT CT CT CT CT CT CT CT CT CT CT CT TC
120165 AC * 10 18/20 AC AC AC AC AC AC AC TC AC CC
145504 AT * 12 22/24 AT AT AA AT AT AT AT GT AT AT AT AT
152785 TA * 13 24/26 TA TA GA TA TA TA TA TA TA TA TA TA GA
160870 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GT GT TT GG
177124 GT * 12 22/24 GT GT GT CT GT GT GT GT GT GT GG GT
178336 CA * 12 22/24 CA AA CA CA CA CA CA CA CA CA AA CA
178513 GT * 11 20/22 GT GC GT GT GT GT GT GA GT GT GT
180243 TG * 11 20/22 TG TG AG TG TG TG TG TG TG TG TA
187769 CA * 10 18/20 CA CA TA AA CA CA CA CA CA CA
192335 CA * 10 18/20 CA CA CA CA CA CA CA CA GA GA
209294 AC * 10 18/20 AC AC AC AC AC AC AC AT AC AT
219788 AC * 12 22/24 AC AC AC AC TC AC AC AC AC AC AC TC
225868 TG * 17 31/34 TG TG TG TA TG GG TG TG TG TG TG TG TG TG TG TG CG
228391 AT * 10 18/20 AT AT AT AT AT AT AT AT AT GC
229104 CA * 11 21/22 CA CA CA CA CG CA CA CA CA CA CA
231366 TA * 15 27/30 TA AA TA TA TA TA CA TA TA TA TA TA TA TA CA
233923 CA * 15 28/30 CA CA CA CA CA CA CA CA CA CA CA CA CA CC CG
238012 GA * 10 18/20 GA GA GA AA GA GA GA GA GA GC
247560 GT * 16 29/32 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GC AG
248334 TA * 17 32/34 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA NA TG
248924 GT * 10 18/20 GT GT GT GT AT GT GT AT GT GT
250655 AT * 13 24/26 AT AT AT AC AT AT AT AT AT GT AT AT AT
254920 TG * 14 26/28 TG TG TT TG TG TG TG TG TG TG TG TG AG TG
256056 TG * 10 19/20 TG TG TG TG TG TG TG TG TG TA
262316 TG * 11 21/22 TG TG TG CG TG TG TG TG TG TG TG
264308 AT * 11 20/22 AT AT AT AT AT AT AA AT AT AT AA
267654 TG * 10 18/20 TG TG TG TG TG TG TG TG CA TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 286716
Total number of repeats detected.............. 39
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 7 1 0 1 6 6 6 5 0 1 0 0
15 to 19 0 2 0 0 0 1 1 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 1 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 7 3 0 1 6 8 7 6 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
7 AT + 3 TA = 10
0 AG + 1 GA + 1 CT + 0 TC = 2
6 GT + 7 TG + 8 CA + 6 AC = 27
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295423|gb|AE003565.1|AE003565 Drosophila melanogaster genomic scaffold 142000013386050 section 52 of 54, complete sequence
Position Repeat Coverage Repeat
27519 TG * 10 19/20 TG TG TG TG TG TG TG TT TG TG
28099 GA * 11 20/22 GA GA GT GA GA GA GA GA GA GA CA
58089 TA * 17 31/34 TA TA CA TA TA TA TA TA TA TA TA TA GA TA GA TA TA
63370 CA * 12 22/24 CA GC CA CA CA CA CA CA CA CA CA CA
63564 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AC AT AA
66271 GT * 11 20/22 GT TT GT GT GT GT GT GT GT GT GG
69615 TA * 11 20/22 TA TA TA TA TA TA TG TA TG TA TA
69937 AT * 12 22/24 AT AT AT AT AT GT AT GT AT AT AT AT
74732 TA * 10 18/20 TA TA TA TA TA AA CA TA TA TA
82461 TA * 13 24/26 TA TA TA TT TG TA TA TA TA TA TA TA TA
83432 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CC CT
84400 GT * 16 30/32 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GA GC
87146 AG * 21 38/42 AG AG AG AG AG AG AG AG AG AG AG GG AG AG AG GG AG AG AG AG CC
92966 AC * 10 18/20 AC AC AC GC AC AC AC AC AC TC
95605 CA * 12 22/24 CA CA CA CA CA CA CG CA CA CA TA CA
98428 GT * 16 30/32 GT GT GT GT GT GT GT GT GT GT GT GT GC GT GT GC
103952 TG * 10 18/20 TG TG TA TC TG TG TG TG TG TG
112815 AT * 11 20/22 AT AT AT AT AT AT GT AC AT AT AT
113818 AC * 10 19/20 AC AC AC AC AC AC AC AC AC AG
121195 AT * 10 18/20 AT AT AT AT CT AC AT AT AT AT
121383 TG * 10 18/20 TG CG TG CG TG TG TG TG TG TG
122446 CT * 10 19/20 CT CT CT CT CT CT CT CT CT TT
122987 GA * 11 20/22 GA GA GA GA GA GA AA GA GA GC GA
123977 CA * 12 22/24 CA GA AA CA CA CA CA CA CA CA CA CA
124329 AT * 10 18/20 AT AT AT GT AT AT AA AT AT AT
129610 GT * 11 20/22 GT GG GT GT GC GT GT GT GT GT GT
134824 CA * 13 25/26 CA CT CA CA CA CA CA CA CA CA CA CA CA
140111 CT * 16 29/32 CT CT CT CT CT CT CT CT CT CT CT CT CT CT TG CA
142080 GT * 12 22/24 GT GT GT GT GT GT GT GT GG GT GT AT
143948 TG * 10 18/20 TG TG TG TG TG TG AG TG AG TG
147869 GA * 11 21/22 GA GA GA GA GA GA GA GA GA GG GA
148007 GT * 10 18/20 GT GC GT GC GT GT GT GT GT GT
148892 TG * 17 31/34 TG CG AG TG TG TG TG TG TG TG TG TG TG TG TG TG TT
149413 CA * 10 18/20 CA CA CA CA CA CA CA CA TA CT
154960 GT * 15 27/30 GT GT GT GT GT GT GT GT GT GT TT GT GT GC CT
155729 AG * 10 18/20 AG AG AG AG AG AA AA AG AG AG
162042 TG * 21 38/42 TG TG TG TG TG TG TG TC TG TG TG TT TG TG TG TG TG TG TG AG CG
163821 AT * 12 22/24 AT AC AT AT AA AT AT AT AT AT AT AT
173093 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT GC GA
173298 TC * 13 24/26 TC TC TC GC TC TC TC TC TC TC TC TC TG
177321 AT * 12 22/24 AT AT AT AT AT AT AT AT AT AA CT AT
179122 TG * 10 18/20 TG CA TG TG TG TG TG TG TG TG
194652 CA * 10 18/20 CA CA CA CA CA CA CA TA CC CA
199569 CA * 10 18/20 CA CA CA GA CA CA AA CA CA CA
200345 TG * 10 18/20 TG TG TG TG TT TG TG TG TG TT
235976 TG * 10 18/20 TG CG AG TG TG TG TG TG TG TG
238250 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG TG CA
260178 AT * 10 18/20 AT AT AT AT AT GT AT AT AT TT
262094 CA * 13 24/26 CA CA CT CA GA CA CA CA CA CA CA CA CA
268841 AT * 11 20/22 AT AT AT AT AA AT TT AT AT AT AT
280419 AT * 10 18/20 AT AT AT AT AT AT AT AT AT TA
284028 TG * 10 18/20 TG TG TG TG TG TG TG CG AG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 286782
Total number of repeats detected.............. 52
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 9 3 1 3 3 9 9 5 1 1 0 0
15 to 19 0 1 0 0 0 0 1 3 0 1 0 0
20 to 24 0 0 1 0 0 0 1 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 9 4 2 3 3 9 11 8 1 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
9 AT + 4 TA = 13
2 AG + 3 GA + 2 CT + 1 TC = 8
8 GT + 11 TG + 9 CA + 3 AC = 31
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295378|gb|AE003564.1|AE003564 Drosophila melanogaster genomic scaffold 142000013386050 section 51 of 54, complete sequence
Position Repeat Coverage Repeat
3444 AC * 11 20/22 AC GC AC AC AC AC AC AC AC AC AG
5212 AC * 11 20/22 AC TC AC AC AC CC AC AC AC AC AC
9053 AT * 18 33/36 AT AT TT AT AT AT AT AT AT AT AT AG AT AT AT AT AT TT
29072 AC * 10 18/20 AC AC AC AG AC AC AC AC AT AC
31114 GT * 11 21/22 GT GT GT GT GT GT GT GT GG GT GT
70878 GT * 15 28/30 GT GT GT GT GT GT GT GT GT GT GT GT GT CT CT
85531 GT * 11 20/22 GT AT AT GT GT GT GT GT GT GT GT
94824 TA * 20 36/40 TA CA TA TA TA TA AA TA TA TA TA TA TA TA TA CA TA TA TA GA
100683 CA * 10 18/20 CA CA CC CA CA CA CA CA CA CG
104166 AT * 12 22/24 AT AT AT AT AT AT AT GT AT AT GT AT
114291 TG * 10 18/20 TG TG TG TG AG TG TG TG TG TT
115894 GT * 11 20/22 GT GT GT GC GG GT GT GT GT GT GT
139376 TG * 10 18/20 TG TG TG TG TT TG TG TG TA TG
153565 GT * 10 18/20 GT GA CT GT GT GT GT GT GT GT
158393 CA * 11 20/22 CA CA CA CA CA AA CG CA CA CA CA
158841 CA * 10 18/20 CA CA CG CA CA CA CA CA CA CT
158889 AC * 10 18/20 AC AC AC AC AC AC AC AT AC TC
162862 AC * 15 27/30 AC AC AC AC AC AC AC AC AC AC AC AC AC CT AG
183373 AC * 10 18/20 AC AC AC AC AC AC AA AC GC AC
188633 AC * 10 18/20 AC AC AC TC AC AC AC AC AT AC
189013 GA * 12 22/24 GA GA GA AA GA GA GA GT GA GA GA GA
234444 AC * 14 26/28 AC AC AC AC AC AC AC AC AC AC AC AC GC TC
234959 GT * 10 18/20 GT GT GC GT GT GT GT GT GT AT
244863 AC * 10 18/20 AC AC AC AC AC AC AC AC CC CC
256705 TA * 13 24/26 TA TA TA AA TA TA TA TA TA TA TA TA CA
259596 TG * 16 30/32 TG TG TG TG TG TG TG TG TG TG TG TG TG CG TG TC
262213 TG * 10 18/20 TG CG TG TG TG TG TG TC TG TG
273925 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AC AT GC
275165 CT * 13 25/26 CT CC CT CT CT CT CT CT CT CT CT CT CT
280143 AC * 10 18/20 AC AC TC AC TC AC AC AC AC AC
280164 CA * 11 20/22 CA CA CA CA CA CA GG CA CA CA CA
286642 GT * 11 20/22 GT GT GT AT GT GT GT GT GT GT AT
301616 CA * 16 29/32 CA CA CA CA CA CA CA CA CA CA CA CA CG AA CA CC
-----------------------------------------------------------------------------------------
Total sequence length......................... 301840
Total number of repeats detected.............. 33
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 1 0 1 10 4 3 6 0 1 0 0
15 to 19 1 0 0 0 1 1 1 1 0 0 0 0
20 to 24 0 1 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 2 0 1 11 5 4 7 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 2 TA = 4
0 AG + 1 GA + 1 CT + 0 TC = 2
7 GT + 4 TG + 5 CA + 11 AC = 27
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295346|gb|AE003563.1|AE003563 Drosophila melanogaster genomic scaffold 142000013386050 section 50 of 54, complete sequence
Position Repeat Coverage Repeat
5500 TA * 10 18/20 TA TA TA TA TA TA TA TG TA TC
10551 TG * 12 22/24 TG TG TG TG TC TG TG TG TG TG TG TA
29616 CA * 12 22/24 CA CA CA CA CT CT CA CA CA CA CA CA
60328 TA * 10 18/20 TA TA TA TA TA TA TA TA TT TT
99842 TG * 11 20/22 TG TG TG TG TT TT TG TG TG TG TG
114877 TG * 11 21/22 TG TG TG TG TG TG TG TG TT TG TG
127607 CA * 12 22/24 CA AA CA CA CA CA CA CA AA CA CA CA
145145 GT * 12 22/24 GT AT AT GT GT GT GT GT GT GT GT GT
223580 TA * 21 39/42 TA TG TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA CA
227577 AC * 17 31/34 AC GC AC AC AC AA AC AC AC AC AC AC AC AC AC AA AC
272478 TG * 11 20/22 TG TG GG TA TG TG TG TG TG TG TG
275546 GA * 12 23/24 GA AA GA GA GA GA GA GA GA GA GA GA
276420 CA * 10 18/20 CA CA CA CT CA CA CA CA CA CT
-----------------------------------------------------------------------------------------
Total sequence length......................... 277325
Total number of repeats detected.............. 13
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 2 0 1 0 3 4 1 0 0 0 0
15 to 19 0 0 0 0 1 0 0 0 0 0 0 0
20 to 24 0 1 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 3 0 1 1 3 4 1 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 3 TA = 3
0 AG + 1 GA + 0 CT + 0 TC = 1
1 GT + 4 TG + 3 CA + 1 AC = 9
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295332|gb|AE003562.1|AE003562 Drosophila melanogaster genomic scaffold 142000013386050 section 49 of 54, complete sequence
Position Repeat Coverage Repeat
3895 AC * 10 18/20 AC CA AC AC AC AC AC AC AC AC
4033 GT * 11 20/22 GT GT GT GT GT GT GT AT GC GT GT
4181 CA * 11 21/22 CA CT CA CA CA CA CA CA CA CA CA
9346 TA * 17 31/34 TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA CA TG
12216 TA * 16 30/32 TA TA TA TA TA TA AA TA TA TA TA TA TG TA TA TA
19675 AC * 11 20/22 AC AC AC AA AC AC AC AC AC AG AC
19950 AC * 10 18/20 AC AC AC AC AC AC AC AT GC AC
23745 AT * 16 29/32 AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT GG
28475 TG * 13 24/26 TG TG TG CA TG TG TG TG TG TG TG TG TG
28663 AC * 10 18/20 AC AT GC AC AC AC AC AC AC AC
36915 CA * 10 18/20 CA CA TA CA CA CA CA CA CA CG
107936 TG * 12 22/24 TG CG TG TG TG TT TG TG TG TG TG TG
108201 TG * 11 20/22 TG TG TG TG TG TG TC TG TG GG TG
114827 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG TG CA
133421 CA * 12 23/24 CA AA CA CA CA CA CA CA CA CA CA CA
137578 TA * 10 18/20 TA TA TA TA TA TA TA AA TA TT
163813 TG * 11 21/22 TG TG TG TG TG TG TG TG TG TG TT
170038 AT * 11 20/22 AT AG AT AT AC AT AT AT AT AT AT
172313 TA * 10 18/20 TA TA TA TA TA TA TA TA TT TT
183864 GT * 10 18/20 GT TT AT GT GT GT GT GT GT GT
191808 CA * 10 19/20 CA CA CA CT CA CA CA CA CA CA
194068 AT * 10 19/20 AT AT AT AT AT AT AT AT AA AT
238563 AC * 10 18/20 AC AC AC AC AC AC AC AC AC TT
-----------------------------------------------------------------------------------------
Total sequence length......................... 249584
Total number of repeats detected.............. 23
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 2 0 0 5 4 5 2 0 0 0 0
15 to 19 1 2 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 4 0 0 5 4 5 2 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 4 TA = 7
0 AG + 0 GA + 0 CT + 0 TC = 0
2 GT + 5 TG + 4 CA + 5 AC = 16
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295317|gb|AE003561.1|AE003561 Drosophila melanogaster genomic scaffold 142000013386050 section 48 of 54, complete sequence
Position Repeat Coverage Repeat
2827 TG * 12 22/24 TG TA TG TG TG TG TG TG TG TG TG GG
5450 TA * 11 20/22 TA AA TA TA TA TA TA TA TA TA AA
15652 GT * 11 20/22 GT GT GT GT CT GT GT GT GT GT GA
23347 TG * 12 22/24 TG TC AG TG TG TG TG TG TG TG TG TG
24417 TG * 10 18/20 TG TG TG TT TG TG TG TG TG TA
25595 TC * 11 20/22 TC TA TC TC TC TT TC TC TC TC TC
27412 TG * 12 22/24 TG TG TG TG TT CG TG TG TG TG TG TG
28517 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC AC TC AT
42566 AT * 10 18/20 AT GT AT AT AT AT AT AT AT AC
43905 TG * 11 21/22 TG TG TG TG TG TG TG TG AG TG TG
69582 GT * 11 20/22 GT GT GT GA GT GT GT GT GT GT TT
70629 AC * 11 20/22 AC CC AC AC AC AC AA AC AC AC AC
74812 GT * 13 24/26 GT AT GT GT GT GT GT GT GT GT GT GC GT
78089 TG * 13 24/26 TG TG CG AG TG TG TG TG TG TG TG TG TG
86548 AC * 11 20/22 AC AC GC AC AC AC AT AC AC AC AC
87662 TG * 10 19/20 TG TG TG TG TG TG TG TG TG CG
90530 TC * 11 20/22 TC TC TC TC TC TC TC TA TC TC TT
90884 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT TT GG
99030 TA * 13 24/26 TA TA TA TA TA TA TA TA TA TA TT TA TT
104643 AT * 10 18/20 AT AT AT AT AT AT AT AT AT TG
117270 AT * 10 18/20 AT AT AT AT AT AT TT AT AT CT
126943 TA * 10 18/20 TA TA TA TA TA TA TA TA CT TA
127537 GT * 14 26/28 GT GG GT GT GT GC GT GT GT GT GT GT GT GT
129094 GT * 11 20/22 GT GT GT GG GT GT GT GT AT GT GT
144044 AT * 10 18/20 AT AT AT AA AT AT AT AA AT AT
150375 TA * 10 18/20 TA TA TA TA TG TA TG TA TA TA
156723 AG * 10 18/20 AG AG AG AG AG AG AG TG AA AG
181071 GT * 10 18/20 GT GT GT GC GT GC GT GT GT GT
195220 TA * 17 31/34 TA TA TA TA TA TA TA TA TA TA TA TA TA TA CA CA AA
202488 AT * 12 23/24 AT AT AA AT AT AT AT AT AT AT AT AT
206787 CT * 18 33/36 CT CG CT CG CT CT CT CT CT CT CT CT CT CT CT CT CT GT
210509 TA * 15 27/30 TA AA TA TA TA TA TA AA TA TA TA TA TA TA CA
212873 TA * 10 18/20 TA TA TA TA TA TA TA TA TA CC
223188 AT * 11 20/22 AT AT GT AT AT GT AT AT AT AT AT
223989 TA * 10 18/20 TA AA GA TA TA TA TA TA TA TA
235690 AC * 11 20/22 AC AC AC AT AC AC AC AC AC AC AT
240526 GA * 12 22/24 GA GA CA GC GA GA GA GA GA GA GA GA
243811 TG * 13 24/26 TG TG AG TG TG TA TG TG TG TG TG TG TG
246936 TA * 16 30/32 TA TA TA TT TA TA TA TA TA TA TA TA TA TA TA TG
265782 TG * 11 20/22 TG TG CT TG TG TG TG TG TG TG TG
270086 AT * 12 23/24 AT AT AT AT AT AT AT AT AT AT AT AC
273855 CA * 13 24/26 CA CA CA CA CA CA AA CG CA CA CA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 274307
Total number of repeats detected.............. 42
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 7 6 1 1 4 1 9 7 2 0 0 0
15 to 19 0 3 0 0 0 0 0 0 0 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 7 9 1 1 4 1 9 7 2 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
7 AT + 9 TA = 16
1 AG + 1 GA + 1 CT + 2 TC = 5
7 GT + 9 TG + 1 CA + 4 AC = 21
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295278|gb|AE003560.1|AE003560 Drosophila melanogaster genomic scaffold 142000013386050 section 47 of 54, complete sequence
Position Repeat Coverage Repeat
1374 CA * 10 18/20 CA CA CA CA CA CA CA CA CA GG
5092 GT * 13 24/26 GT GA GT GT AT GT GT GT GT GT GT GT GT
5303 AG * 10 18/20 AG AG AA AG AG AG AG AC AG AG
7939 AC * 11 20/22 AC AC AC AT AC AC AC AC AC AC AA
9517 TG * 10 18/20 TG TA TG TG TG TG TG TG TG TT
9553 TG * 10 18/20 TG TG TG TG TG TG TG TG CG CG
13026 GT * 11 21/22 GT GT GT GT GT GT GT GT GT GT GG
16290 AT * 10 18/20 AT AT AC AT AT AT AT AC AT AT
18251 CA * 15 27/30 CA CA CA CA CA CA CA CA CA CA CT CT CA CA GA
19585 GT * 11 20/22 GT GC GT GT GT GT GT GT GT GT GA
22801 AT * 11 20/22 AT AT AT AT AC AT AT AT AT AT TT
24740 AT * 14 26/28 AT AT AT AG AT AT AT AT AT AT AT AT AT AC
31526 AC * 12 22/24 AC GC AA AC AC AC AC AC AC AC AC AC
32467 CA * 10 18/20 CA CA CA CA CT CA AA CA CA CA
33581 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GC GT GA
37160 TA * 10 19/20 TA TA TA TT TA TA TA TA TA TA
52885 AG * 10 19/20 AG AG AG AG AA AG AG AG AG AG
59784 TG * 18 33/36 TG TA TG TG TG TG TG TG TG TG TG TG TG TG TG TG TT TA
84060 AC * 11 20/22 AC AC AT GC AC AC AC AC AC AC AC
121449 AC * 20 36/40 AC AC AC CC AC TC AC AC AC AC AC AC AC AC AC AC AC AC AC TG
133177 TA * 12 22/24 TA TA TA AA TA AA TA TA TA TA TA TA
137217 TG * 10 18/20 TG TG TG TG TG TG TG AG TG TT
138818 AG * 10 18/20 AG AG GG AT AG AG AG AG AG AG
154430 TG * 11 20/22 TG TT TG TG TG TG TG TG TG TG TT
157226 TG * 11 20/22 TG TG TC TG TG TG TG GG TG TG TG
166545 AC * 10 19/20 AC AC AC AC AC AT AC AC AC AC
168132 CA * 10 18/20 CA AA CA CA CA CG CA CA CA CA
172454 AC * 13 24/26 AC CC GC AC AC AC AC AC AC AC AC AC AC
172816 CA * 10 18/20 CA CA CA CA CA CA CA CA CA TG
182446 AT * 10 18/20 AT AT AT GT AT AT AT GT AT AT
191035 AC * 10 18/20 AC AC AC AC AC AC AC AT AC TC
192224 TA * 12 22/24 TA TA TA TA TA TT TA TA TA TA TC TA
199931 TA * 10 18/20 TA TC TG TA TA TA TA TA TA TA
211690 AG * 15 27/30 AG AG AG AA AG AG AG AG AG AG AG AG AG CG CG
218871 TC * 10 18/20 TC TC TC TC TA TT TC TC TC TC
223067 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG AA
223340 AG * 10 18/20 AG AC AA AG AG AG AG AG AG AG
223361 GA * 13 25/26 GA GA GA GA GA GA GA GA GA GA GA AA GA
229513 GT * 15 27/30 GT GT GT GT GC GT GT GT TT GT GT GT GT GT GC
245052 AG * 14 26/28 AG AG AG AG AG AG AG AG AG AG CG AG AG GG
247218 TA * 12 22/24 TA TA TA TA TA TA TA TA TA TC CA TA
259965 TA * 13 24/26 TA AA TA TA TA TG TA TA TA TA TA TA TA
260799 GT * 11 20/22 GT GG TT GT GT GT GT GT GT GT GT
263683 CA * 11 20/22 CA CA GA GA CA CA CA CA CA CA CA
263933 GT * 10 18/20 GT GT GC GT GT GT GT GT GT TT
265775 AG * 13 24/26 AG AG AG AG AG AG AA AG AG AG AG TG AG
274947 AT * 17 31/34 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA TA AT
283396 TG * 12 22/24 TG TG TG TG TG TG CG CG TG TG TG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 285495
Total number of repeats detected.............. 48
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 6 6 1 6 5 7 6 1 0 0 0
15 to 19 1 0 1 0 0 1 1 1 0 0 0 0
20 to 24 0 0 0 0 1 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 6 7 1 7 6 8 7 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 6 TA = 11
7 AG + 1 GA + 0 CT + 1 TC = 9
7 GT + 8 TG + 6 CA + 7 AC = 28
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295229|gb|AE003559.1|AE003559 Drosophila melanogaster genomic scaffold 142000013386050 section 46 of 54, complete sequence
Position Repeat Coverage Repeat
24522 TA * 13 24/26 TA TA TA TT TG TA TA TA TA TA TA TA TA
40872 TA * 10 18/20 TA TA TA TA TA TA TA TA TG TG
44015 TG * 10 18/20 TG AA TG TG TG TG TG TG TG TG
46059 GT * 11 20/22 GT GT GA AT GT GT GT GT GT GT GT
55508 TG * 10 18/20 TG TC GG TG TG TG TG TG TG TG
63933 CA * 12 22/24 CA CG CA GA CA CA CA CA CA CA CA CA
70889 CA * 16 30/32 CA CA CA CA CA CA CA CA CA CA CA CA TA CA CA TA
110352 GT * 11 20/22 GT GT GC AT GT GT GT GT GT GT GT
113661 AC * 10 18/20 AC GC AC AC AT AC AC AC AC AC
125360 AT * 10 18/20 AT AT AT AT AT TT TT AT AT AT
134022 TG * 10 18/20 TG TG TG TG TG TG TG TT TG GG
159958 TG * 10 18/20 TG AG TG TG TG TG TG TG TG TA
163942 AC * 10 18/20 AC AC AC AC AC AC AC AC AC TG
164842 TG * 12 22/24 TG TT TG TG TG CG TG TG TG TG TG TG
167647 CA * 13 24/26 CA CA CA CA CA CA CA TA CA CA CA CG CA
171955 GT * 10 18/20 GT GT GT GC AT GT GT GT GT GT
178443 CA * 13 24/26 CA CG CA CT CA CA CA CA CA CA CA CA CA
178920 GT * 12 22/24 GT GT GA GT GT AT GT GT GT GT GT GT
179721 GT * 13 24/26 GT GT GT GT GT GC GT GT GT GT GT GT AT
185571 TG * 10 18/20 TG TG TG TG TT TG TG TG TG TT
191485 TA * 11 20/22 TA TA TC TA TG TA TA TA TA TA TA
194103 AT * 10 18/20 AT AT AT AT AT AT AT AT TT TT
196771 AC * 10 18/20 AC AC AC AC AT AC AT AC AC AC
198438 TA * 13 24/26 TA TA TA TA TA TA TA TT TA TT TA TA TA
201940 TG * 10 18/20 TG TG CG AG TG TG TG TG TG TG
203941 CT * 10 18/20 CT TT CT CT CT CT AT CT CT CT
215446 CA * 12 22/24 CA CA CA CA CA CA CA CA CG CG CA CA
215812 TA * 10 18/20 TA TA TA TG TA TA TA TG TA TA
218169 AT * 10 18/20 AT AT AT AT AT AT AT AT AA TT
222551 AT * 15 27/30 AT AT GT AT AT AT AT AT AT AT GT AT AT AT AG
224124 TA * 10 18/20 TA CA TA TA TA AA TA TA TA TA
247576 TA * 15 28/30 TA TA TA TA TA TA TA TG TA TA TA TA TA TA TG
253332 AG * 13 24/26 AG AG AC AG AG AG AG AG AG AG GG AG AG
259371 AC * 11 20/22 AC AA TC AC AC AC AC AC AC AC AC
260730 TG * 10 18/20 TG CG TG TG TG TG TG TG TG TT
264608 TG * 16 29/32 TG TG TA TG TG TG TG TG TG TG TG TT TG TG TT TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 269454
Total number of repeats detected.............. 36
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 6 1 0 4 4 8 5 0 1 0 0
15 to 19 1 1 0 0 0 1 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 7 1 0 4 5 9 5 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 7 TA = 11
1 AG + 0 GA + 1 CT + 0 TC = 2
5 GT + 9 TG + 5 CA + 4 AC = 23
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295193|gb|AE003558.1|AE003558 Drosophila melanogaster genomic scaffold 142000013386050 section 45 of 54, complete sequence
Position Repeat Coverage Repeat
7268 TA * 16 30/32 TA TA TA TA TA TA TA TA TA CA TA TA TA TA TA TG
16848 GT * 10 18/20 GT GT GT GT GT GT GT AT CT GT
50101 CA * 10 18/20 CA GA CA CA TA CA CA CA CA CA
60029 CT * 12 22/24 CT AT CT CT CT CT CT CT CT CT AT CT
106639 CA * 11 20/22 CA CA CA CA CT TA CA CA CA CA CA
145953 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AG AC
160788 CA * 10 18/20 CA CA CA TA CA CA CA CA CC CA
190970 AT * 10 18/20 AT AT AT AT AT AT AT AT AA GT
192764 CA * 39 71/78 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA GA TT TT CG TA
193812 GT * 20 36/40 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT TA CC
200533 GT * 10 19/20 GT GT GT GT GT GT GT GT AT GT
208215 CA * 16 30/32 CA AA TA CA CA CA CA CA CA CA CA CA CA CA CA CA
215421 TA * 12 22/24 TA TA TA TA TA TA TA TA TG TA TA TT
224383 TG * 10 18/20 TG TG TG TG TG TG CG TG TG GG
224416 TG * 12 22/24 TG TG TA TG TG TG TG TC TG TG TG TG
271916 TG * 10 18/20 TG TG CG TG TG TG TG TG AG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 273744
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 1 0 0 0 3 3 2 0 1 0 0
15 to 19 0 1 0 0 0 1 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 1 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 1 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 2 0 0 0 5 3 3 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 2 TA = 4
0 AG + 0 GA + 1 CT + 0 TC = 1
3 GT + 3 TG + 5 CA + 0 AC = 11
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295172|gb|AE003557.1|AE003557 Drosophila melanogaster genomic scaffold 142000013386050 section 44 of 54, complete sequence
Position Repeat Coverage Repeat
3351 AT * 11 20/22 AT AT AT AT AT AT AT AT AA AT AG
11380 AT * 10 18/20 AT AT AT GT AT AT AT AT AT AG
11449 AT * 10 18/20 AT AT AT AC AT AT AT AT AT TT
12986 CA * 10 19/20 CA CA CA AA CA CA CA CA CA CA
13721 TG * 11 20/22 TG TG TG TG TG TG TG TG TA TG TA
17146 TC * 20 36/40 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC GA TC TC CA
20672 GT * 17 31/34 GT GT GT GT GA CT GT GT GT GT GT GT GT GT GT GC GT
24904 GT * 15 27/30 GT GT GT GT GT GT GT GT GT GT GT GT GG GG GG
39268 AC * 10 18/20 AC AC AC AC TC AC AC AC AC AT
43590 TA * 10 18/20 TA GA TA TA TA TA CA TA TA TA
48073 GA * 10 18/20 GA GA GA GA AA GA GA GA GA GT
50895 AC * 16 29/32 AC GC AC AC AC AC AA AC AC AC AC AC AC AC AC GC
55025 AT * 12 22/24 AT AT AT AT AT AT AT AT AT AC AA AT
56054 AT * 10 18/20 AT AC AT AT AT AT AT AT AT AG
67141 AT * 14 26/28 AT AT AT AT GT AT AT AT AT AT AT AT GT AT
99990 TA * 12 22/24 TA AA CA TA TA TA TA TA TA TA TA TA
166474 TG * 10 19/20 TG TG TG TG TG TG TG GG TG TG
173782 CT * 11 20/22 CT CT CT CA CT CT CT CT CT CA CT
191094 AC * 12 22/24 AC AC TC CC AC AC AC AC AC AC AC AC
196199 TC * 12 22/24 TC CC TC CC TC TC TC TC TC TC TC TC
197024 AT * 10 18/20 AT AT AT AT AT AT AT AT GT AA
217366 TC * 10 18/20 TC TC TC TG TC GC TC TC TC TC
222974 GA * 10 18/20 GA GA AA GA GA GT GA GA GA GA
227822 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TT GG
229493 AG * 11 20/22 AG AG AG TG AG AG AG AG AG AG AT
232724 TG * 12 22/24 TG TG TC TG TG TG TG TG CG TG TG TG
235127 AC * 10 18/20 AC AC AC AC CC AC AC AA AC AC
238342 TA * 10 18/20 TA TA TA CA TA TA TA TA CA TA
242156 GT * 10 18/20 GT GT GT GT GT CT GT GT GT GA
246285 TG * 15 28/30 TG TG TG TG TC TG TG TG TG TG TG TG TG TG GG
258621 AT * 11 20/22 AT AT AT AT AT AT AT AT AT TA AT
265859 GT * 13 24/26 GT GT GT GC GT GT GT GT GT GT GT GT CT
268754 AT * 10 18/20 AT TT AT CT AT AT AT AT AT AT
277508 AG * 12 22/24 AG AG AC AG AG AG AG AA AG AG AG AG
-----------------------------------------------------------------------------------------
Total sequence length......................... 286418
Total number of repeats detected.............. 34
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 9 3 2 2 3 1 4 2 2 1 0 0
15 to 19 0 0 0 0 1 0 1 2 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 1 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 9 3 2 2 4 1 5 4 3 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
9 AT + 3 TA = 12
2 AG + 2 GA + 1 CT + 3 TC = 8
4 GT + 5 TG + 1 CA + 4 AC = 14
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295117|gb|AE003556.1|AE003556 Drosophila melanogaster genomic scaffold 142000013386050 section 43 of 54, complete sequence
Position Repeat Coverage Repeat
1168 GT * 12 23/24 GT GT GT GT GT GT GT GT GT GT GT GC
1315 CT * 13 24/26 CT CC CT CC CT CT CT CT CT CT CT CT CT
5510 AG * 10 18/20 AG AG AG AG AG AA AG AG AT AG
59319 GT * 11 20/22 GT GT GT GT GT GT GT GT GT GT TG
64633 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TT TT
66271 TG * 16 29/32 TG TT TG TG TG TG TG TG TG TG TG TG TG CG TG GG
66526 AT * 10 19/20 AT AT AT AT AT AT AT GT AT AT
68775 TG * 11 20/22 TG TA TG TG TG TG TG TG GG TG TG
71298 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CT TA
72869 AC * 12 22/24 AC AC AC AC AC AC GC AC AC AC AT AC
88548 AT * 10 19/20 AT AT AC AT AT AT AT AT AT AT
90018 GA * 13 24/26 GA GA AA GC GA GA GA GA GA GA GA GA GA
90121 GT * 10 18/20 GT GT GT GT GT GT GT GA GT GC
94594 AC * 12 22/24 AC AC AC AC AC AC AC AC GC AC AC AA
103654 AT * 11 20/22 AT AT AT AT AT AT AT AT AT GA AT
109112 AC * 11 20/22 AC AA AC GC AC AC AC AC AC AC AC
119400 TA * 10 18/20 TA TA TA TG TG TA TA TA TA TA
128327 AT * 10 18/20 AT AT AT GT AT AT AT AT AC AT
146187 AC * 10 18/20 AC AC AC AC AC AC AC CC AA AC
217208 CA * 10 18/20 CA CA CA CG CA CA CA CA CA CC
219574 TA * 11 20/22 TA TA TA TA TA TA TA TA TA CA TT
236455 CA * 10 18/20 CA GA CA CA GA CA CA CA CA CA
269318 AC * 10 18/20 AC AC AC AC AC AC AA AT AC AC
-----------------------------------------------------------------------------------------
Total sequence length......................... 281146
Total number of repeats detected.............. 23
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 2 1 1 5 3 2 3 0 1 0 0
15 to 19 0 0 0 0 0 0 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 2 1 1 5 3 3 3 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 2 TA = 6
1 AG + 1 GA + 1 CT + 0 TC = 3
3 GT + 3 TG + 3 CA + 5 AC = 14
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295064|gb|AE003555.1|AE003555 Drosophila melanogaster genomic scaffold 142000013386050 section 42 of 54, complete sequence
Position Repeat Coverage Repeat
10006 GT * 14 26/28 GT GT GT GT CC GT GT GT GT GT GT GT GT GT
33819 TA * 10 18/20 TA TA TA TA CA TA TA TA CA TA
34361 AT * 11 20/22 AT GT AC AT AT AT AT AT AT AT AT
37439 AT * 13 25/26 AT AT AT AT AT AT AT AT AT AT AT AT AA
58524 GT * 10 18/20 GT GT GT GT GT GT GT GT GT TA
59156 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG CG GG
60432 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GT AG GT GT
69518 TA * 12 22/24 TA GA TA TA TG TA TA TA TA TA TA TA
82616 AT * 11 20/22 AT AT AT AT GT AT AT TT AT AT AT
103560 GA * 13 25/26 GA GA GA GA GA GA GA GA GA GA GA GC GA
103618 GA * 11 20/22 GA CA GT GA GA GA GA GA GA GA GA
109670 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG AG TG CG
110689 CT * 10 18/20 CT CT CT CT CT CT CT CT CT TA
117712 CT * 10 18/20 CT CT CT CT CT CT CT CT CT TA
119163 TA * 10 18/20 TA TA TA TA TA TA TA TT TA TG
142484 TA * 10 18/20 TA TA TA TA TA TA AA TA TG TA
156016 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GT GT GT TA
158243 TA * 10 18/20 TA TA TA TG TA TA TA TC TA TA
158397 AC * 36 65/72 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AT AC AT AC AT AT AT GG
159858 CT * 15 27/30 CT TT TT CT CT CT CT CT CT CT CT CT CT CT GT
159888 GT * 11 21/22 GT GT GT GT GT AT GT GT GT GT GT
164774 AC * 10 18/20 AC AC AC AC AC AC AC AG GC AC
172827 TG * 11 20/22 TG TG TG TG TG TG TG TG CG TT TG
183091 TA * 12 22/24 TA TT TA TA AA TA TA TA TA TA TA TA
216668 AT * 10 18/20 AT AT AT AT AT GT AT AT AT AG
232742 TA * 13 24/26 TA TG TA TA TA TA CA TA TA TA TA TA TA
233273 AT * 11 20/22 AT AT AT GT AT AT AT GT AT AT AT
233519 CT * 11 21/22 CT CT CT AT CT CT CT CT CT CT CT
235086 AT * 12 22/24 AT AT AT AC AT AC AT AT AT AT AT AT
235903 AC * 12 22/24 AC AC AT AA AC AC AC AC AC AC AC AC
248276 AT * 10 18/20 AT AT AT CC AT AT AT AT AT AT
272705 AT * 12 22/24 AT GT AT AT AT AT AT AT CT AT AT AT
279629 TG * 11 20/22 TG TG TG TG TG TG TG TG CT TG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 281936
Total number of repeats detected.............. 33
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 8 7 0 2 2 0 4 5 0 3 0 0
15 to 19 0 0 0 0 0 0 0 0 0 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 1 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 8 7 0 2 3 0 4 5 0 4 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
8 AT + 7 TA = 15
0 AG + 2 GA + 4 CT + 0 TC = 6
5 GT + 4 TG + 0 CA + 3 AC = 12
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295028|gb|AE003554.1|AE003554 Drosophila melanogaster genomic scaffold 142000013386050 section 41 of 54, complete sequence
Position Repeat Coverage Repeat
2337 GT * 11 20/22 GT GT GT CT GT GT GC GT GT GT GT
11678 TA * 11 20/22 TA TG TA TT TA TA TA TA TA TA TA
16911 CA * 20 36/40 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA TA CT GA CC
24072 TA * 12 22/24 TA TT TA TG TA TA TA TA TA TA TA TA
32573 TA * 15 27/30 TA TA TA TG CA TA TA TA TA TA TA TA TA TA CA
46318 AT * 11 20/22 AT AT GC AT AT AT AT AT AT AT AT
68679 GT * 10 18/20 GT GT TT GT GT GT GT GT CT GT
74194 AC * 10 18/20 AC AA AC AC AC AC AC TC AC AC
128568 TA * 13 25/26 TA TA TA GA TA TA TA TA TA TA TA TA TA
135944 AG * 11 20/22 AG AC AG AG AG AG AG AG AG AG AC
199399 TA * 10 18/20 TA AA TA TA CA TA TA TA TA TA
223543 TG * 11 20/22 TG CG TG TG TG TG TT TG TG TG TG
22