Di-Nucleotide Repeats in Genomic Sequences
Di-Nucleotide Repeats in
Drosophila melanogaster Chromosome-Arm-3L Genomic Scaffolds
Genomic Sequence:..
gi|7316100|gb|AE002584.1|AE002584 Drosophila melanogaster genomic scaffold 142000013386045, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7292550|gb|AE003483.1|AE003483 Drosophila melanogaster genomic scaffold 142000013386045 section 17 of 17, complete sequence
Position Repeat Coverage Repeat
1029 CA * 11 20/22 CA CT CA CA CA CA CA CA CA CA CT
13235 AC * 10 18/20 AC AC AC AC AC AC AC AC GC GC
23038 TG * 10 18/20 TG TG TG CA TG TG TG TG TG TG
31837 AC * 10 18/20 AC AA AC AC AC AC AC AC AC TC
31867 AG * 18 34/36 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG CC AG
39144 CA * 18 33/36 CA CA CT CA CA CT CA CA CA CA CA CA CA CA CA CA CA CT
40547 AT * 10 18/20 AT AT AT AT AT TT AT AT GT AT
41786 CA * 10 18/20 CA CA CA CA CA CG CA CA CG CA
59709 AC * 10 18/20 AC AC AC AC AC AC AC AC TT AC
71010 AC * 11 21/22 AC AC AC AC AC AC AC AC AC AC AT
71851 AC * 11 20/22 AC GC AC AC AC AC TC AC AC AC AC
80908 AT * 10 18/20 AT AT AT AT AT AT AT AT AT CC
97448 CA * 11 20/22 CA CA CA CA CA AA CA CA CA CG CA
121342 CA * 12 22/24 CA CA CA CC CA CA CT CA CA CA CA CA
126044 TG * 11 20/22 TG AG AG TG TG TG TG TG TG TG TG
126889 AC * 10 18/20 AC GC AC AC GC AC AC AC AC AC
127080 CA * 16 29/32 CA GA CA CT CA CA CA CA CA CA CA CA CA CA GA CA
130052 CA * 16 29/32 CA CA CA CA AA CA CA CA CA CA CA CA CA TA CA GA
132835 CA * 11 21/22 CA AA CA CA CA CA CA CA CA CA CA
134108 TG * 11 20/22 TG TG TG TG TG TG TG TG AG TG GG
138068 TG * 11 20/22 TG TG TG TG TG CA TG TG TG TG TG
140331 AT * 15 27/30 AT AG AT AT AG AT AT AT AT AT AT AT AT AT AG
142933 AC * 10 19/20 AC AC AC AC AT AC AC AC AC AC
144818 GA * 10 18/20 GA GA GA GA GA GA GA CC GA GA
145714 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AT AT
156589 AC * 11 20/22 AC AC AC AC AC AC AC GC AC AG AC
160289 TG * 12 22/24 TG TG TG TA TG TG TG TG TG TG TA TG
164561 TG * 12 22/24 TG TG TG TG TG CG TG TG TG AG TG TG
168760 CA * 12 22/24 CA AA CG CA CA CA CA CA CA CA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 175489
Total number of repeats detected.............. 29
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 0 0 1 9 6 6 0 0 0 0 0
15 to 19 1 0 1 0 0 3 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 0 1 1 9 9 6 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 0 TA = 3
1 AG + 1 GA + 0 CT + 0 TC = 2
0 GT + 6 TG + 9 CA + 9 AC = 24
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7292521|gb|AE003482.1|AE003482 Drosophila melanogaster genomic scaffold 142000013386045 section 16 of 17, complete sequence
Position Repeat Coverage Repeat
1175 AT * 10 19/20 AT AG AT AT AT AT AT AT AT AT
7369 AC * 10 18/20 AC AC TC AC AC GC AC AC AC AC
16107 TG * 11 20/22 TG TG TT TG TG TG TG TG TA TG TG
20996 TG * 10 18/20 TG TT TG TG TG TG TG TG TG CG
35125 GT * 13 24/26 GT GA GT GT GT GT GT GT GT GT GT GT AT
47326 GT * 12 22/24 GT CT GT GT GT GT GT GT GT GT GT TT
50068 CA * 11 20/22 CA CA CA CC CA CA CA CA CA CA CT
52481 AT * 10 18/20 AT AT AT AT GT AT GT AT AT AT
53215 TG * 12 22/24 TG TG TG TA TG TG TG TG AG TG TG TG
64996 AT * 11 20/22 AT AT AT AT AT AT AG AC AT AT AT
66199 AG * 11 20/22 AG AG AG AG AG AG AG AG AG CG CG
85481 AC * 10 18/20 AC AC AG AT AC AC AC AC AC AC
85839 AT * 11 20/22 AT AT AT AT AT AT AT CT AT AT AG
100305 TG * 10 18/20 TG TG TG TG TA TG AG TG TG TG
108273 AT * 11 20/22 AT AT AT AT AC AT TT AT AT AT AT
124087 TG * 11 20/22 TG GT TG TG TG TG TG TG TG TG TG
147897 TG * 16 30/32 TG TG TG TG TG TG TG TG TG TG TG TG TG CG GG TG
150798 GT * 10 18/20 GT GT GT GT GT GT GT GG CT GT
158223 TA * 10 18/20 TA TA TA TA TA TA TA TA TC TT
173715 CA * 13 24/26 CA AC CA CA CA CA CA CA CA CA CA CA CA
207352 TA * 10 18/20 TA TA GA TA TA TA GA TA TA TA
216116 AC * 12 22/24 AC TC AC AA AC AC AC AC AC AC AC AC
216650 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TG CA
248950 TA * 10 18/20 TA TC TA TA TA CA TA TA TA TA
251848 GT * 13 24/26 GT GT GT GT GT GT GT GT GT AT GT GT GC
-----------------------------------------------------------------------------------------
Total sequence length......................... 301682
Total number of repeats detected.............. 25
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 3 1 0 3 2 6 4 0 0 0 0
15 to 19 0 0 0 0 0 0 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 3 1 0 3 2 7 4 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 3 TA = 8
1 AG + 0 GA + 0 CT + 0 TC = 1
4 GT + 7 TG + 2 CA + 3 AC = 16
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7292481|gb|AE003481.1|AE003481 Drosophila melanogaster genomic scaffold 142000013386045 section 15 of 17, complete sequence
Position Repeat Coverage Repeat
18324 AT * 10 18/20 AT AT AT AT AT AT AT AA AC AT
36667 AC * 11 20/22 AC AC AC AC AC AC AC AC AT GC AC
45027 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AC AA
53417 AC * 11 20/22 AC AC AC AC AC AC AA GC AC AC AC
53958 AT * 10 18/20 AT AA AT AT AC AT AT AT AT AT
57565 CA * 10 18/20 CA CA CA CA CA CA AG CA CA CA
64651 TG * 12 22/24 TG TG TG AG TG TG TG TG TG TG TC TG
64924 GT * 12 22/24 GT GT GT GT GT GT CT AT GT GT GT GT
67679 TA * 11 20/22 TA TA TA TA TA AA TA TA TA TA CA
68929 AG * 12 22/24 AG TT AG AG AG AG AG AG AG AG AG AG
73836 GT * 11 20/22 GT GT TG GT GT GT GT GT GT GT GT
74077 GA * 10 18/20 GA TA GA GA GG GA GA GA GA GA
108352 AT * 10 18/20 AT AT CC AT AT AT AT AT AT AT
110538 TG * 10 18/20 TG TG TG TG TG TG TG TG TG CC
124101 CT * 11 21/22 CT AT CT CT CT CT CT CT CT CT CT
124402 TC * 10 18/20 TC TC TC GC TC GC TC TC TC TC
125793 CT * 10 18/20 CT CT TC CT CT CT CT CT CT CT
217832 AC * 10 18/20 AC AC AC AC AT AC AC AC AC GC
227215 AT * 12 22/24 AT AT GC AT AT AT AT AT AT AT AT AT
251259 TG * 11 20/22 TG TG TG TG TG CG TG TG TG TG CG
257985 TA * 10 18/20 TA TA TA CA TA TG TA TA TA TA
261925 TG * 11 21/22 TG TT TG TG TG TG TG TG TG TG TG
264195 AT * 11 20/22 AT AT AT AT AT AT AT AT AT TT TT
267903 CT * 10 18/20 CT CT CT CT CT CT CT CT TC CT
270642 TG * 13 24/26 TG TC TG TG TG TG TG TG TG TC TG TG TG
274596 TA * 10 18/20 TA TA TA TA TA TA TA TA TT TT
285265 CA * 10 18/20 CA CA CA CA AA CA CA TA CA CA
295496 AC * 15 27/30 AC AC AC AC AC AC AC AC AC AC AC AG AC AA TC
313172 AG * 11 20/22 AG AG AG AG AA AG AG AG AG CG AG
313631 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CA GG
-----------------------------------------------------------------------------------------
Total sequence length......................... 319765
Total number of repeats detected.............. 30
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 6 3 2 1 3 3 5 2 1 3 0 0
15 to 19 0 0 0 0 1 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 6 3 2 1 4 3 5 2 1 3 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
6 AT + 3 TA = 9
2 AG + 1 GA + 3 CT + 1 TC = 7
2 GT + 5 TG + 3 CA + 4 AC = 14
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7292415|gb|AE003480.1|AE003480 Drosophila melanogaster genomic scaffold 142000013386045 section 14 of 17, complete sequence
Position Repeat Coverage Repeat
2476 TA * 10 18/20 TA TA TA TG TA TA TA TA TA AA
5044 TG * 11 21/22 TG TA TG TG TG TG TG TG TG TG TG
5160 GT * 10 18/20 GT GT GT GC GA GT GT GT GT GT
63170 CA * 10 18/20 CA CG CA CA CA CA CA CA CA AA
68654 TG * 10 18/20 TG TG AG TG TG TG TG TG TG AG
95634 AT * 17 31/34 AT AT AT AT AT AT AT AT GA AT AT AT AT AT AT AC AT
96349 AT * 16 29/32 AT AT AT AT AT AC AT AT AT AT AT AT AT TT AT AA
112624 AC * 12 22/24 AC AC AC AC AC AC AC AC AC GC AC GC
137879 AC * 11 20/22 AC AC AA AA AC AC AC AC AC AC AC
150941 AT * 10 18/20 AT AT AT AT AT AA AT AT AA AT
162544 GT * 10 18/20 GT GC AT GT GT GT GT GT GT GT
182676 TA * 11 21/22 TA TA TA TC TA TA TA TA TA TA TA
183284 AT * 11 20/22 AT TT AT AT AT AT AT GT AT AT AT
183343 TA * 10 19/20 TA TA TA TA TA TA TA TA TC TA
186226 TG * 13 24/26 TG TG TG TG TG CG TG TG TC TG TG TG TG
231235 CA * 11 20/22 CA CT CA CA CA CA CA CA CA GA CA
231257 AC * 11 20/22 AC AG AC AC AC AC AC AC AC AC TC
237733 TC * 10 18/20 TC TC TC TC TC TT TC TC AC TC
256136 CA * 10 18/20 CA CA AA CA GA CA CA CA CA CA
302498 TG * 13 24/26 TG GT TG TG TG TG TG TG TG TG TG TG TG
306313 AT * 13 24/26 AT AT AT AT AT AT AT GT AC AT AT AT AT
306726 GT * 10 18/20 GT GT GT GC GT GT GT GT GA GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 310450
Total number of repeats detected.............. 22
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 3 0 0 3 3 4 3 1 0 0 0
15 to 19 2 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 3 0 0 3 3 4 3 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 3 TA = 8
0 AG + 0 GA + 0 CT + 1 TC = 1
3 GT + 4 TG + 3 CA + 3 AC = 13
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7292381|gb|AE003479.1|AE003479 Drosophila melanogaster genomic scaffold 142000013386045 section 13 of 17, complete sequence
Position Repeat Coverage Repeat
45857 TA * 10 19/20 TA CA TA TA TA TA TA TA TA TA
51712 AC * 11 20/22 AC AC AC GC TC AC AC AC AC AC AC
65276 TG * 12 22/24 TG TG TG TG TG TG CA TG TG TG TG TG
70402 CA * 10 18/20 CA CA CA CA CA CA CA CA CA TC
70647 AG * 15 28/30 AG AG AC AG AG AG AG AG AG AG AG AG AG AG CG
92810 AT * 11 20/22 AT AT AA AT AT AT AT AC AT AT AT
139823 CA * 11 20/22 CA CA CA CA CA CA CA CA CT CA TA
141893 CT * 12 22/24 CT CT CT CT CT CT CT CT CT CT CG CG
153844 CA * 12 23/24 CA CA CA CA CA CA CA CA CA AA CA CA
155996 TA * 10 18/20 TA CA AA TA TA TA TA TA TA TA
157757 CA * 10 18/20 CA CA CA CA CA CA GG CA CA CA
175052 TA * 12 22/24 TA AA TA TA TA AA TA TA TA TA TA TA
183824 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TT CG
190572 CA * 11 20/22 CA CA CA CA CA CA CA CA AA CG CA
190728 GT * 16 29/32 GT GT GC AT GT GT GT GT GT GT GT GT GT GT GT GC
193150 AC * 11 20/22 AC AC AC AC AT AC GC AC AC AC AC
201385 AC * 11 20/22 AC GC AC AC AC AC AC AC AG AC AC
225235 TG * 10 18/20 TG GG TG TG TA TG TG TG TG TG
226221 AC * 11 20/22 AC AC AC AA GC AC AC AC AC AC AC
231121 AC * 11 20/22 AC AC GT AC AC AC AC AC AC AC AC
232487 AT * 12 22/24 AT AT AT AT AT AT AT AT AT AT AT TG
240020 TC * 10 19/20 TC TT TC TC TC TC TC TC TC TC
263505 GT * 11 21/22 GT GT GT GT GT GT GT GT GT GC GT
267014 GT * 14 26/28 GT GT GT GT GT GT GT GT GT GT GT GT TT GC
267236 TG * 12 22/24 TG TG TG TG TG TG TG GG AG TG TG TG
277193 GA * 10 18/20 GA GA GA GT GA GA GA GA AA GA
277604 AG * 11 20/22 AG AG AG AG AG AG AG AG AG AG TT
277807 TC * 13 24/26 TC CC TC TC TC TG TC TC TC TC TC TC TC
280504 AT * 12 22/24 AT AC AT AT AT AT AT AT AT AT TT AT
282315 AC * 12 22/24 AC AC AC AC AC AC TC AC AC AT AC AC
284403 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC AC AG AT
293899 GA * 10 18/20 GA GA GA GA CA GA GA TA GA GA
298287 CA * 10 18/20 CA CA CA CA CA GA CA GA CA CA
305234 AC * 10 19/20 AC CC AC AC AC AC AC AC AC AC
306181 TA * 10 18/20 TA TA TA TA TA TA TA TA TA GC
306891 AC * 10 18/20 AC AC AC AT AC AC AC AC AC GC
-----------------------------------------------------------------------------------------
Total sequence length......................... 309883
Total number of repeats detected.............. 36
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 4 1 2 9 6 4 2 2 1 0 0
15 to 19 0 0 1 0 0 0 0 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 4 2 2 9 6 4 3 2 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 4 TA = 7
2 AG + 2 GA + 1 CT + 2 TC = 7
3 GT + 4 TG + 6 CA + 9 AC = 22
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7292360|gb|AE003478.1|AE003478 Drosophila melanogaster genomic scaffold 142000013386045 section 12 of 17, complete sequence
Position Repeat Coverage Repeat
22133 GT * 11 20/22 GT GT GT GT GT GT GT GT AT GT GC
32850 TA * 11 20/22 TA TA TA TA TA TA GT TA TA TA TA
37253 AT * 11 20/22 AT AT GT AT AT AT AT AT AT AT AG
40334 GT * 10 18/20 GT GT GT GT GT GT GT GT GT TA
40499 GT * 11 20/22 GT GT GA GT GT GT GT GT GT GT GC
48667 TA * 10 18/20 TA TA TA TG TA CA TA TA TA TA
58641 TG * 11 20/22 TG TG CG TG TG TG TG TG TG TG CG
65363 TG * 12 22/24 TG GC TG TG TG TG TG TG TG TG TG TG
81582 TG * 10 18/20 TG CT TG TG TG TG TG TG TG TG
84259 AG * 15 27/30 AG AG AG AG AG AG AG AG AG AG AG AC AG TG CG
86717 TG * 12 22/24 TG TG TG TG TG TG TG TG TG CG TT TG
86925 GT * 11 21/22 GT GT GT GT GT GT GT GT GT GT GG
104138 GT * 10 18/20 GT GT GG GT GT GT GT GT GC GT
107707 AC * 10 19/20 AC AA AC AC AC AC AC AC AC AC
109117 TG * 16 29/32 TG TG TG TG TG TG TG TG TG TG TG TG CG TG TG GT
131891 TG * 16 30/32 TG TG TG TG TG TG TG TG TG TG TG TG TC TG TG GG
147259 CA * 12 22/24 CA CG CA CA CA CA CA CA CA CA CA CG
158102 AT * 10 19/20 AT AT AT AT AT AT AT AT AT TT
172207 AC * 11 20/22 AC AC AC AC AC AC AC AC TC AT AC
178035 AT * 13 24/26 AT AT AT AC AT AT AT AT AT AT GT AT AT
192206 TA * 10 18/20 TA TA TA TA TA TG TA TA TA CA
200940 AC * 11 20/22 AC CC AC AC AC AC AC AC AC AC TC
203284 TA * 16 29/32 TA TA TA AA TA TA TA TA TA TA TA TA TA TG TA TG
214173 TG * 11 20/22 TG TC TC TG TG TG TG TG TG TG TG
272719 GT * 10 18/20 GT TC GT GT GT GT GT GT GT GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 317218
Total number of repeats detected.............. 25
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 3 0 0 3 1 5 6 0 0 0 0
15 to 19 0 1 1 0 0 0 2 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 4 1 0 3 1 7 6 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 4 TA = 7
1 AG + 0 GA + 0 CT + 0 TC = 1
6 GT + 7 TG + 1 CA + 3 AC = 17
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7292303|gb|AE003477.1|AE003477 Drosophila melanogaster genomic scaffold 142000013386045 section 11 of 17, complete sequence
Position Repeat Coverage Repeat
7263 TG * 10 19/20 TG TG TT TG TG TG TG TG TG TG
9850 GA * 10 18/20 GA GA GT GA GA GA GA GA GG GA
17922 TA * 10 18/20 TA CA TA TA TA TG TA TA TA TA
64554 TA * 12 22/24 TA TT TA TA TA TA TA AA TA TA TA TA
88455 TC * 10 18/20 TC GC TG TC TC TC TC TC TC TC
90145 AT * 15 27/30 AT AT AC AT AC AT AT AT AT AT AT AT AT AT AG
90814 AT * 12 22/24 AT AT AT AT GT AT AT AT AT TT AT AT
159640 AC * 11 20/22 AC AC AC AC AC AC CC AT AC AC AC
168522 AC * 10 18/20 AC AC AC AC AC AC AC AC GC AG
171973 AT * 13 24/26 AT AC AT AT AT AA AT AT AT AT AT AT AT
180871 TG * 10 18/20 TG TG CG TG TG TG TG TG TG TT
182358 AC * 11 20/22 AC AC AC AC GC AC GC AC AC AC AC
182732 CT * 10 18/20 CT CT CT CT CT CG CT CG CT CT
190350 GT * 12 23/24 GT GT GT GT GT GT GT GT GT GT GT GC
194324 TA * 23 42/46 TA TA TT TA TA TA TA CA TA TA TA TA TA TA TA AA TA TA TA CA TA TA TA
203337 TC * 12 22/24 TC TC TC TC TC TC TC TC TC TC TC AG
206111 AG * 13 24/26 AG AA AG AG AG AG AG AG GG AG AG AG AG
244135 TA * 15 27/30 TA TA TA TA CA TA TA AA TA TA TA TA TA TA TT
-----------------------------------------------------------------------------------------
Total sequence length......................... 304734
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 2 1 1 3 0 2 1 2 1 0 0
15 to 19 1 1 0 0 0 0 0 0 0 0 0 0
20 to 24 0 1 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 4 1 1 3 0 2 1 2 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 4 TA = 7
1 AG + 1 GA + 1 CT + 2 TC = 5
1 GT + 2 TG + 0 CA + 3 AC = 6
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7292275|gb|AE003476.1|AE003476 Drosophila melanogaster genomic scaffold 142000013386045 section 10 of 17, complete sequence
Position Repeat Coverage Repeat
2961 AT * 10 18/20 AT AA AA AT AT AT AT AT AT AT
9332 GT * 13 24/26 GT GG TT GT GT GT GT GT GT GT GT GT GT
23706 AT * 10 18/20 AT AA AT AT AT AT AT AT AT AA
30188 GT * 11 21/22 GT GT GT GT GT GT GT GT GT GT TT
39059 TA * 11 21/22 TA TA TA TA TA TA TA TA TA TA CA
43844 TG * 15 27/30 TG AG TG TG TG TG TG TG TG TG TG GG TG TG TT
51389 GA * 10 18/20 GA GA GA GA GA GA GA GA GG GG
71494 AC * 10 18/20 AC AC AC AC GC AC AC AC AC AT
71880 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC AC AT TC
75450 TG * 11 20/22 TG AG TG TG TG TG TG TG TG TG AG
76367 TG * 11 20/22 TG TG TG TG TG TG TG TG AG TG TT
85710 AC * 10 18/20 AC AT TC AC AC AC AC AC AC AC
87519 AG * 16 29/32 AG AG AA AG AG AA AG AG AG AG AG AG AG AG AG CG
88141 AC * 10 18/20 AC AC AC AG AT AC AC AC AC AC
108952 TG * 10 19/20 TG TG TG GG TG TG TG TG TG TG
116194 CA * 10 19/20 CA CA CA CA CA GA CA CA CA CA
118405 AC * 12 22/24 AC AC AC AC AC AC AC AT AC AC AT AC
122618 CA * 10 19/20 CA CA CA CA CA CA AA CA CA CA
122687 AC * 15 27/30 AC AC AC AA GC AC AC AC AC AC AC AC AC AC AG
139622 AG * 10 18/20 AG AG CG AG AG AG AG TG AG AG
146155 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AC AC TA
152443 TA * 11 20/22 TA TA TT TA TA TA TA TA TA TA TT
156906 AC * 11 20/22 AC GC AC AC AC AC AC AC AC AC AT
157253 AG * 10 18/20 AG AG AG AG AG AG AG AG AG TT
170184 AT * 12 22/24 AT AT AT AT AT AT AT AA AT AT AT AC
179230 AC * 12 22/24 AC AC TT AC AC AC AC AC AC AC AC AC
185521 AC * 11 20/22 AC AC AG AC AC AC AC AC AC AC GC
200352 AC * 14 26/28 AC AC AC AC AC AC AC AC AC AC AC AC AA AG
217445 GT * 13 24/26 GT GT GT GT GT GT GT AT GT GT GT GC GT
303167 GT * 10 18/20 GT GC GT GT GT GT GC GT GT GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 306945
Total number of repeats detected.............. 30
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 2 2 1 10 2 3 4 0 0 0 0
15 to 19 0 0 1 0 1 0 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 2 3 1 11 2 4 4 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 2 TA = 5
3 AG + 1 GA + 0 CT + 0 TC = 4
4 GT + 4 TG + 2 CA + 11 AC = 21
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7292236|gb|AE003475.1|AE003475 Drosophila melanogaster genomic scaffold 142000013386045 section 9 of 17, complete sequence
Position Repeat Coverage Repeat
9645 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG GT
16168 TA * 10 18/20 TA TA TA TA AA TA TA TA TA AA
39601 CA * 11 21/22 CA CA CA CA CA CA CA CA CA CA CC
110634 AT * 10 18/20 AT AT AT AT AT AT AT AT AT GA
113088 TA * 17 31/34 TA TA TA GA TA TA TA TA TA TA TA TA CA TA TA TT TA
126805 CA * 11 20/22 CA CA CA CA CA CA CA CA CT CA CT
133178 TC * 10 18/20 TC TC GC TC TC TG TC TC TC TC
137226 TC * 13 24/26 TC CC TC TC TC TC TC TC TG TC TC TC TC
161247 GT * 11 20/22 GT GT GA GT GT GT GT GA GT GT GT
163771 CA * 14 26/28 CA CA CA CA CA CA CA CA CA CA CA CG CG CA
165731 TG * 11 20/22 TG TG TG TG TG TG TG TG TG GG TT
167402 CA * 13 24/26 CA CA CA CA CA CA CA CA CT CA CA CA GA
172261 TA * 15 27/30 TA TA TA TG TA TA TA TA TA TA TG TA TA TA TG
182615 CA * 10 18/20 CA CA CA CA CA CA CA TG CA CA
219616 TA * 12 22/24 TA TT TA TA TA TA TA TA TA TA TA TT
225116 TG * 11 20/22 TG TG TA TA TG TG TG TG TG TG TG
233322 GT * 10 18/20 GT CT TT GT GT GT GT GT GT GT
238937 TG * 13 24/26 TG CG TG TG AG TG TG TG TG TG TG TG TG
247930 GT * 17 31/34 GT GG AT GT GT GT GT GT GT GT GT GT GT GT GT GT GG
251602 CA * 14 26/28 CA CT CG CA CA CA CA CA CA CA CA CA CA CA
266806 TG * 11 20/22 TG TT TG TG TG TG TG TG TG TT TG
272398 AT * 13 24/26 AT AT AT AC AT AT AT AT AT AT AT AT AC
279567 GT * 11 20/22 GT GT AA GT GT GT GT GT GT GT GT
291988 AT * 16 29/32 AT AT AT AT AT AT CT AT AT AT AT AT AT AT CT AG
294287 AC * 10 19/20 AC AC AC AC AC AC AC AC AC AG
-----------------------------------------------------------------------------------------
Total sequence length......................... 304231
Total number of repeats detected.............. 25
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 2 0 0 1 6 5 3 2 0 0 0
15 to 19 1 2 0 0 0 0 0 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 4 0 0 1 6 5 4 2 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 4 TA = 7
0 AG + 0 GA + 0 CT + 2 TC = 2
4 GT + 5 TG + 6 CA + 1 AC = 16
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7292198|gb|AE003474.1|AE003474 Drosophila melanogaster genomic scaffold 142000013386045 section 8 of 17, complete sequence
Position Repeat Coverage Repeat
34403 TG * 13 24/26 TG TG TG TG TG TG TG TG TG CG TG TG TA
36422 TC * 16 29/32 TC CC TC TC TC TC TC TC TC TC TC TC TC TC TG GC
45469 TA * 11 20/22 TA AA TA CA TA TA TA TA TA TA TA
63927 CT * 11 20/22 CT CT CT CT CT CT CT CT CT CG CA
73932 CA * 11 20/22 CA CC CA CA CA CA CA CA CA CA TA
74350 TA * 10 18/20 TA TA TA TA TA TA TA CA TA CA
106868 AT * 15 27/30 AT AG AT AT AT AT AT AT AT AT AT AT TT AT TT
136651 CT * 11 20/22 CT CT CT CT CT CT CT CT CT GT TT
179571 GT * 13 24/26 GT GC GT TT GT GT GT GT GT GT GT GT GT
192623 AT * 10 19/20 AT AT AT AT AT AT AT AT AT TT
212924 AC * 14 26/28 AC AC AC AC AC AC AC AC AC AC AC TC AC AT
281502 AG * 10 18/20 AG AG AG CG AG AG CG AG AG AG
281623 AC * 10 19/20 AC AC AC AC AC AC AC AC AA AC
-----------------------------------------------------------------------------------------
Total sequence length......................... 306364
Total number of repeats detected.............. 13
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 2 1 0 2 1 1 1 0 2 0 0
15 to 19 1 0 0 0 0 0 0 0 1 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 2 1 0 2 1 1 1 1 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 2 TA = 4
1 AG + 0 GA + 2 CT + 1 TC = 4
1 GT + 1 TG + 1 CA + 2 AC = 5
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7292168|gb|AE003473.1|AE003473 Drosophila melanogaster genomic scaffold 142000013386045 section 7 of 17, complete sequence
Position Repeat Coverage Repeat
2736 TG * 11 20/22 TG TG TG TG TG TG TG TG TG AG GG
8422 AT * 11 20/22 AT AG TT AT AT AT AT AT AT AT AT
21974 GT * 10 18/20 GT GT GT TT GT GT GT GT GA GT
22006 TG * 10 19/20 TG TG TG TG TG TG TG TG TG GG
22511 AT * 10 18/20 AT AT GT AG AT AT AT AT AT AT
23688 GT * 11 20/22 GT GT GT GT GT GT TA GT GT GT GT
42374 TG * 13 25/26 TG TG TG TG TG TG TG TG TG TG AG TG TG
47711 CT * 11 20/22 CT CC AT CT CT CT CT CT CT CT CT
55974 CA * 10 18/20 CA GA CA CA CA CA CA CA CA CT
81921 GA * 13 24/26 GA GA GA GA GA GA GA GA GA GA GA GC GG
83228 CA * 10 18/20 CA CG CA CG CA CA CA CA CA CA
83285 AG * 12 22/24 AG AG AG AG GA AG AG AG AG AG AG AG
85479 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA CA TT
86068 GT * 12 22/24 GT GT GT GT GA GT GT GT GT GT GT GG
88768 TA * 19 35/38 TA TG TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA CT
91232 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG TG GA
92283 TA * 11 20/22 TA TA TA TA TA TA TA TG TA TA TG
142451 AC * 12 22/24 AC AC AC AC AC AC AC AC CC AT AC AC
191324 CA * 18 33/36 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CT TA CA AA
195506 TA * 11 20/22 TA TG TA TA AA TA TA TA TA TA TA
195967 TA * 11 20/22 TA TA TA TA TA TA TA TA TG TA TT
266554 AT * 11 20/22 AT AT AT AT AT AT AT AT AT GC AT
272972 AC * 12 22/24 AC GC AC TC AC AC AC AC AC AC AC AC
302604 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GT GT GA GC
-----------------------------------------------------------------------------------------
Total sequence length......................... 304106
Total number of repeats detected.............. 24
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 3 1 1 2 3 4 4 0 1 0 0
15 to 19 0 1 0 0 0 1 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 4 1 1 2 4 4 4 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 4 TA = 7
1 AG + 1 GA + 1 CT + 0 TC = 3
4 GT + 4 TG + 4 CA + 2 AC = 14
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7292093|gb|AE003472.1|AE003472 Drosophila melanogaster genomic scaffold 142000013386045 section 6 of 17, complete sequence
Position Repeat Coverage Repeat
18196 TG * 10 19/20 TG TG TG TG TG TG TG TG TG GG
35049 TG * 11 20/22 TG TG TG TG TT TG TG TG TG CG TG
42555 GT * 10 19/20 GT GT GT GT GC GT GT GT GT GT
91858 GT * 20 36/40 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GA GT GT CT CT TT
93544 GT * 11 20/22 GT CC GT GT GT GT GT GT GT GT GT
97966 TA * 12 22/24 TA TG GA TA TA TA TA TA TA TA TA TA
102384 TC * 18 33/36 TC TC TC TC TC TC TC TC TG TT TC TC TC TC TC TC TG TC
154430 TG * 10 18/20 TG TG TG TG CG CG TG TG TG TG
195988 AT * 11 20/22 AT AT AT AT AT AG CT AT AT AT AT
296183 AT * 13 24/26 AT AT AT AT AC AA AT AT AT AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 303191
Total number of repeats detected.............. 10
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 1 0 0 0 0 3 2 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 1 0 0 0
20 to 24 0 0 0 0 0 0 0 1 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 1 0 0 0 0 3 3 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 1 TA = 3
0 AG + 0 GA + 0 CT + 1 TC = 1
3 GT + 3 TG + 0 CA + 0 AC = 6
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7292041|gb|AE003471.1|AE003471 Drosophila melanogaster genomic scaffold 142000013386045 section 5 of 17, complete sequence
Position Repeat Coverage Repeat
13087 GT * 10 18/20 GT AT GC GT GT GT GT GT GT GT
24402 TA * 11 20/22 TA AA TA TA TA TG TA TA TA TA TA
32042 AG * 16 29/32 AG AG AG AC AG AG AG AG AG AG AG AG AG AG AT AT
44305 AT * 10 18/20 AT AC AT AT AC AT AT AT AT AT
49526 CA * 10 19/20 CA CA CA CA CA CA CA CA CC CA
96897 CA * 10 18/20 CA CA CA CA CA CA CA TA CA CC
101936 AG * 10 18/20 AG AG AG GG TG AG AG AG AG AG
132576 GA * 11 20/22 GA GA GA GC GA GA GC GA GA GA GA
136843 CA * 12 22/24 CA CA CA CA CA CA AA CA CA CG CA CA
139580 GT * 10 18/20 GT GT GT GT GT GT GT GT GT TG
142990 AT * 10 18/20 AT AT AT AT AT GT AC AT AT AT
169934 GT * 16 30/32 GT GT GT AT GT GT GT GT GT GT GT TT GT GT GT GT
191175 CA * 15 28/30 CA CA TA GA CA CA CA CA CA CA CA CA CA CA CA
197989 TG * 11 21/22 TG TG TG TG TG TG TG TG TG TG TC
234583 AC * 13 25/26 AC AC AC AC AC AC AC AC AC AC AC AC TC
235023 AT * 16 29/32 AT AT AT AT AT AC AT AT AT AT AT AT AT AT AT CG
239175 CA * 15 28/30 CA CA CA CA CA CA CA CA CA TA CA CA CA CA CT
251976 GA * 17 31/34 GA GA GA GA GA GA GA GA GA GA GA GA CA TA GA GG GA
253279 CA * 12 22/24 CA CA CA CT TA CA CA CA CA CA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 301109
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 1 1 1 1 4 1 2 0 0 0 0
15 to 19 1 0 1 1 0 2 0 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 1 2 2 1 6 1 3 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 1 TA = 4
2 AG + 2 GA + 0 CT + 0 TC = 4
3 GT + 1 TG + 6 CA + 1 AC = 11
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7292017|gb|AE003470.1|AE003470 Drosophila melanogaster genomic scaffold 142000013386045 section 4 of 17, complete sequence
Position Repeat Coverage Repeat
4119 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG GT
4397 TG * 10 18/20 TG CG TA TG TG TG TG TG TG TG
7444 AT * 10 18/20 AT AT AC AT AT AT AT AT AC AT
8268 CA * 11 21/22 CA CA CA CA CA CA CA CA CA CA TA
8309 AC * 10 19/20 AC AC AC AC AC AC AC AC AC AG
26338 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GC GA GT GT
27114 CA * 13 24/26 CA CA CA CA CT GA CA CA CA CA CA CA CA
33253 CA * 10 18/20 CA CG CA CA CC CA CA CA CA CA
39939 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT GA GG
41982 CT * 12 22/24 CT TT CT CT CT CT CT CT CT CT CT CC
45772 CA * 17 31/34 CA CA CA CA CA CA CA CA CA CA CA CA GG CA TA CA CA
55627 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GT GT AT CT
68811 TA * 10 18/20 TA TA TA TA TA TA TA TA TT GA
70406 AT * 17 31/34 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GA AC
80230 CA * 23 42/46 CA CG CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CG GG
88299 GT * 18 33/36 GT GA GT GT GT GT GT GT GT GT GT GT GT GT GT GT GA GA
103095 GT * 12 22/24 GT GT GT GC GT GT GT GT GT GT GG GT
110648 TG * 12 22/24 TG CG CG TG TG TG TG TG TG TG TG TG
115444 TG * 16 30/32 TG TG TC TG TG TG TG TG TG TG TG TG TG TG TG CG
137022 AT * 11 20/22 AT AT AT AT AT AT AA AT AT TT AT
139708 GT * 10 18/20 GT GT GT AT GT AT GT GT GT GT
139772 TG * 10 18/20 TG TC TG TG TG TG TG TG TT TG
139803 GT * 12 23/24 GT GT GT AT GT GT GT GT GT GT GT GT
144103 CA * 13 24/26 CA CT CA CA CA CA CA CA GA CA CA CA CA
145882 CA * 13 25/26 CA CA CT CA CA CA CA CA CA CA CA CA CA
149251 TG * 15 28/30 TG TG CG TG TG TG TG TG GG TG TG TG TG TG TG
149429 AC * 10 19/20 AC AC AC AC AC AC AC AC AC AA
152385 AT * 12 22/24 AT AT GT AT AT AT AT AT AT AT AT CT
153651 CT * 11 20/22 CT CA CT CT CT CT CT CT CG CT CT
157430 TG * 15 28/30 TG AG TG TG TG TG TG TG TG TG TG TG AG TG TG
159075 CA * 12 22/24 CA CA CA CA CT CA CA CA CA CA CA CG
167751 TC * 13 24/26 TC TC TC TC TC TC TC TC TC TG CC TC TC
169687 TG * 22 40/44 TG TG TG TG TG TG TG TG TG TG TG TG TG TC TG GG CG TG TG TG TA TG
177592 CA * 12 22/24 CA CT CA CA CA CA CG CA CA CA CA CA
186512 AG * 10 18/20 AG AG AG AG AG AG AG AC AA AG
192733 TG * 12 22/24 TG TG TG TG CG TG TG CG TG TG TG TG
196278 CT * 10 18/20 CT CT AT CT CT CT CT CT CT CG
206726 GT * 10 18/20 GT GT GT GT GT GT GT GA GT GG
206850 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CG CA TA
207039 CA * 10 18/20 CA AA TA CA CA CA CA CA CA CA
207081 CA * 10 18/20 CA CC AA CA CA CA CA CA CA CA
208949 GT * 17 31/34 GT GT GT GT GC AT GT GT GT GT GT GT GT GT GT GT GA
209850 TA * 11 20/22 TA TA TA TA TA TA TG TA TG TA TA
210121 GT * 10 18/20 GT AT GT GT GT GG GT GT GT GT
216418 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG CC
217251 TG * 13 24/26 TG GC TG TG TG TG TG TG TG TG TG TG TG
218772 TG * 22 40/44 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG GG TG TG TG GG GC
219667 GT * 11 21/22 GT GT GT GT GT GT GT GT GT GT GC
224360 AT * 10 18/20 AT AT AT AT AT AA AT AC AT AT
244941 TA * 10 18/20 TA TA TA CA TA CA TA TA TA TA
244973 AT * 11 20/22 AT AT AC AT AT AT AT TT AT AT AT
248575 AT * 16 29/32 AT AT AT CT AT AT AT AT AT AT AT AA AT AT AT AC
253007 TA * 15 27/30 TA AA TA TA TA TA TA TA TA TA TA TA TA GA AA
257789 GT * 10 19/20 GT GT GT AT GT GT GT GT GT GT
265973 AG * 10 18/20 AG CG AG AG AG AG AG AG AG AA
-----------------------------------------------------------------------------------------
Total sequence length......................... 302423
Total number of repeats detected.............. 55
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 3 2 0 2 10 7 10 1 3 0 0
15 to 19 2 1 0 0 0 1 3 2 0 0 0 0
20 to 24 0 0 0 0 0 1 2 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 7 4 2 0 2 12 12 12 1 3 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
7 AT + 4 TA = 11
2 AG + 0 GA + 3 CT + 1 TC = 6
12 GT + 12 TG + 12 CA + 2 AC = 38
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7291982|gb|AE003469.1|AE003469 Drosophila melanogaster genomic scaffold 142000013386045 section 3 of 17, complete sequence
Position Repeat Coverage Repeat
535 GT * 10 19/20 GT GT GC GT GT GT GT GT GT GT
5073 AT * 10 18/20 AT AT AT GT AT GT AT AT AT AT
11543 GT * 13 25/26 GT GT GT GT GT GT GT GT GT GT GT GC GT
12015 AC * 11 20/22 AC AC AC AC AC AC AC AC GC AC GC
19629 TA * 13 24/26 TA TA CA TA TA TA TA TA TA TA TA TT TA
55069 TG * 10 19/20 TG TG TG TG TG TG TG TG GG TG
75971 AT * 10 18/20 AT AT AT AT AT AT AT AT AG CT
96242 CT * 13 24/26 CT CT CT CT TT CT CT CT CT CT CT CT GT
105080 AC * 12 22/24 AC GA AC AC AC AC AC AC AC AC AC AC
123458 CA * 11 20/22 CA CA CA CA CT CG CA CA CA CA CA
124076 AC * 11 20/22 AC AC GC AC AC AC AC AC AC AC AG
189477 CA * 10 19/20 CA CA CA CA CA CA CA CA CA CG
243708 TG * 10 18/20 TG TG TG CG TG TG TG TG AG TG
249527 TA * 13 24/26 TA TA TA TA TA TA TA TA TG TA TA TA TG
265238 AT * 10 18/20 AT CT AC AT AT AT AT AT AT AT
280176 GT * 10 18/20 GT GT GT AT GT GT GT GT GT GG
286290 TG * 11 20/22 TG TA TA TG TG TG TG TG TG TG TG
286325 TG * 14 26/28 TG TG TG TG TG TG CG TG TG TA TG TG TG TG
288186 GT * 14 26/28 GT GT GT GT GT GT GT GT GT CT GT GT GC GT
290336 GT * 10 18/20 GT AT GT GT GT GT GT GT GT TT
292263 AC * 11 20/22 AC AC AT AC TC AC AC AC AC AC AC
292307 TG * 13 24/26 TG TT TG TG TG TG TG TG TG TG TT TG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 301868
Total number of repeats detected.............. 22
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 2 0 0 4 2 5 5 0 1 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 2 0 0 4 2 5 5 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 2 TA = 5
0 AG + 0 GA + 1 CT + 0 TC = 1
5 GT + 5 TG + 2 CA + 4 AC = 16
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7291959|gb|AE003468.1|AE003468 Drosophila melanogaster genomic scaffold 142000013386045 section 2 of 17, complete sequence
Position Repeat Coverage Repeat
1708 CA * 10 18/20 CA GA CA CA CA CA CA CA CA CG
60310 AG * 16 29/32 AG AG AG AG TG GG AG AG AG AG AG AG AG AG AG CG
70210 GT * 13 24/26 GT GT GT GT GT GT AT AT GT GT GT GT GT
90736 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
90760 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
90784 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
90808 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
90832 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
90856 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
90880 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
90904 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
90928 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
91480 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
91504 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
91528 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
91552 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
91576 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
91600 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
91624 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
91648 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
91672 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
91696 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
91720 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
91744 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
91768 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
91792 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
91816 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
175230 CT * 15 27/30 CT CT CT CT CT CT CT CT CG GT CT CT CT CT TT
202241 TG * 14 26/28 TG TG TG TG TG TG TG TG TG TG TG TG CG GG
226765 CT * 11 20/22 CT CT CT CT CT CT CT CT CT CT TC
228807 TG * 12 22/24 TG TG TG TG TG TG AG TG TG TG TG CG
242499 AT * 11 20/22 AT AT AT AT AT AT AT AC AT AT GT
250720 GA * 11 20/22 GA GA GA GA GA GA GA GA GA GC AA
304652 GT * 11 20/22 GT GT GT GT GT GT GT GT GT GC GG
309351 CA * 10 19/20 CA CA CA CG CA CA CA CA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 310120
Total number of repeats detected.............. 35
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 10 15 0 1 0 2 2 2 0 1 0 0
15 to 19 0 0 1 0 0 0 0 0 0 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 10 15 1 1 0 2 2 2 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
10 AT + 15 TA = 25
1 AG + 1 GA + 2 CT + 0 TC = 4
2 GT + 2 TG + 2 CA + 0 AC = 6
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7291904|gb|AE003467.1|AE003467 Drosophila melanogaster genomic scaffold 142000013386045 section 1 of 17, complete sequence
Position Repeat Coverage Repeat
7305 AG * 12 22/24 AG AC AG AG AG AG AG AG AG AG AA AG
98813 TA * 10 18/20 TA TA TG TA TT TA TA TA TA TA
112095 CT * 21 39/42 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CA CT CT CT CT CT TC
188436 AT * 12 22/24 AT AT GT AT AC AT AT AT AT AT AT AT
248719 GT * 10 19/20 GT GT GT GT GT GT GT GT AT GT
285931 AT * 10 18/20 AT AA AT AT AT AT AT AT TT AT
291673 CA * 10 18/20 CA CA CA CA CA CA CA CA CG CT
298422 TA * 12 22/24 TA TT TA TA TA TA TA TA AA TA TA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 298644
Total number of repeats detected.............. 8
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 2 1 0 0 1 0 1 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 1 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 2 1 0 0 1 0 1 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 2 TA = 4
1 AG + 0 GA + 1 CT + 0 TC = 2
1 GT + 0 TG + 1 CA + 0 AC = 2
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7316103|gb|AE002602.1|AE002602 Drosophila melanogaster genomic scaffold 142000013386050, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295475|gb|AE003567.1|AE003567 Drosophila melanogaster genomic scaffold 142000013386050 section 54 of 54, complete sequence
Position Repeat Coverage Repeat
1181 CA * 15 27/30 CA CA CA CA CA CA CA CA CA CA GG CA CA CA CG
5686 TG * 12 22/24 TG TT TG TG TG TT TG TG TG TG TG TG
18112 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG CG GG
20613 TG * 10 18/20 TG TA TG CG TG TG TG TG TG TG
23236 GT * 12 22/24 GT GT GT GC GT AT GT GT GT GT GT GT
24114 TA * 10 18/20 TA TA CA TA TA TG TA TA TA TA
27318 GT * 16 29/32 GT TT GT GT GT GT GT GT GT GT GT GA GT GT GT GC
29978 GT * 10 18/20 GT GT GT GT GT GT GT GT GT CG
35011 CT * 12 22/24 CT CT CC CT CT CT CT CT CT CT CT TT
35811 AC * 10 18/20 AC AC AC AC AC AC AC AC CC CC
38446 AC * 12 22/24 AC GC AC AC AC AC AC AC AC AC AC GC
43837 TC * 13 24/26 TC TT TC TC TC TC TC TC TC TC TC TC TA
51777 AT * 10 18/20 AT AT AT AT AT GT AC AT AT AT
61752 AT * 11 20/22 AT AT AT TT AT AT AT AT AT TT AT
69633 AC * 12 22/24 AC AC AC AC AC AC AC AC TG AC AC AC
69999 TA * 16 29/32 TA TA TA TA TA TA CA TA TA TA TA TA TA TA AA AA
73938 AT * 10 18/20 AT AT AT AC AT AT TT AT AT AT
78524 CA * 11 20/22 CA CA AA CA CA CA AA CA CA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 104808
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 1 0 0 3 1 3 2 1 1 0 0
15 to 19 0 1 0 0 0 1 0 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 2 0 0 3 2 3 3 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 2 TA = 5
0 AG + 0 GA + 1 CT + 1 TC = 2
3 GT + 3 TG + 2 CA + 3 AC = 11
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295459|gb|AE003566.1|AE003566 Drosophila melanogaster genomic scaffold 142000013386050 section 53 of 54, complete sequence
Position Repeat Coverage Repeat
15389 AC * 13 24/26 AC AC GC AC AC AC AC GC AC AC AC AC AC
17570 AT * 10 18/20 AT AT GT AT AT CT AT AT AT AT
21968 CA * 10 18/20 CA CA CA AA CA CA CC CA CA CA
65175 CA * 28 51/56 CA TA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CT CA AA GT CA CA
67650 CA * 12 22/24 CA CA CA CA CA CA CA CA CA TA CG CA
72191 AT * 14 26/28 AT AT AT AT AT AT AT AT AC GT AT AT AT AT
79080 GT * 11 20/22 GT GT GT GT AA GT GT GT GT GT GT
81025 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AC AC GG
110614 AT * 11 20/22 AT AT AT AT TT AT AT AT AT AT TT
112695 TG * 11 20/22 TG TG TG TA TG TG TG TG TG AG TG
115727 AC * 11 20/22 AC TC AC TC AC AC AC AC AC AC AC
118809 CT * 13 24/26 CT CT CT CT CT CT CT CT CT CT CT CT TC
120165 AC * 10 18/20 AC AC AC AC AC AC AC TC AC CC
145504 AT * 12 22/24 AT AT AA AT AT AT AT GT AT AT AT AT
152785 TA * 13 24/26 TA TA GA TA TA TA TA TA TA TA TA TA GA
160870 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GT GT TT GG
177124 GT * 12 22/24 GT GT GT CT GT GT GT GT GT GT GG GT
178336 CA * 12 22/24 CA AA CA CA CA CA CA CA CA CA AA CA
178513 GT * 11 20/22 GT GC GT GT GT GT GT GA GT GT GT
180243 TG * 11 20/22 TG TG AG TG TG TG TG TG TG TG TA
187769 CA * 10 18/20 CA CA TA AA CA CA CA CA CA CA
192335 CA * 10 18/20 CA CA CA CA CA CA CA CA GA GA
209294 AC * 10 18/20 AC AC AC AC AC AC AC AT AC AT
219788 AC * 12 22/24 AC AC AC AC TC AC AC AC AC AC AC TC
225868 TG * 17 31/34 TG TG TG TA TG GG TG TG TG TG TG TG TG TG TG TG CG
228391 AT * 10 18/20 AT AT AT AT AT AT AT AT AT GC
229104 CA * 11 21/22 CA CA CA CA CG CA CA CA CA CA CA
231366 TA * 15 27/30 TA AA TA TA TA TA CA TA TA TA TA TA TA TA CA
233923 CA * 15 28/30 CA CA CA CA CA CA CA CA CA CA CA CA CA CC CG
238012 GA * 10 18/20 GA GA GA AA GA GA GA GA GA GC
247560 GT * 16 29/32 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GC AG
248334 TA * 17 32/34 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA NA TG
248924 GT * 10 18/20 GT GT GT GT AT GT GT AT GT GT
250655 AT * 13 24/26 AT AT AT AC AT AT AT AT AT GT AT AT AT
254920 TG * 14 26/28 TG TG TT TG TG TG TG TG TG TG TG TG AG TG
256056 TG * 10 19/20 TG TG TG TG TG TG TG TG TG TA
262316 TG * 11 21/22 TG TG TG CG TG TG TG TG TG TG TG
264308 AT * 11 20/22 AT AT AT AT AT AT AA AT AT AT AA
267654 TG * 10 18/20 TG TG TG TG TG TG TG TG CA TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 286716
Total number of repeats detected.............. 39
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 7 1 0 1 6 6 6 5 0 1 0 0
15 to 19 0 2 0 0 0 1 1 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 1 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 7 3 0 1 6 8 7 6 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
7 AT + 3 TA = 10
0 AG + 1 GA + 1 CT + 0 TC = 2
6 GT + 7 TG + 8 CA + 6 AC = 27
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295423|gb|AE003565.1|AE003565 Drosophila melanogaster genomic scaffold 142000013386050 section 52 of 54, complete sequence
Position Repeat Coverage Repeat
27519 TG * 10 19/20 TG TG TG TG TG TG TG TT TG TG
28099 GA * 11 20/22 GA GA GT GA GA GA GA GA GA GA CA
58089 TA * 17 31/34 TA TA CA TA TA TA TA TA TA TA TA TA GA TA GA TA TA
63370 CA * 12 22/24 CA GC CA CA CA CA CA CA CA CA CA CA
63564 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AC AT AA
66271 GT * 11 20/22 GT TT GT GT GT GT GT GT GT GT GG
69615 TA * 11 20/22 TA TA TA TA TA TA TG TA TG TA TA
69937 AT * 12 22/24 AT AT AT AT AT GT AT GT AT AT AT AT
74732 TA * 10 18/20 TA TA TA TA TA AA CA TA TA TA
82461 TA * 13 24/26 TA TA TA TT TG TA TA TA TA TA TA TA TA
83432 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CC CT
84400 GT * 16 30/32 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GA GC
87146 AG * 21 38/42 AG AG AG AG AG AG AG AG AG AG AG GG AG AG AG GG AG AG AG AG CC
92966 AC * 10 18/20 AC AC AC GC AC AC AC AC AC TC
95605 CA * 12 22/24 CA CA CA CA CA CA CG CA CA CA TA CA
98428 GT * 16 30/32 GT GT GT GT GT GT GT GT GT GT GT GT GC GT GT GC
103952 TG * 10 18/20 TG TG TA TC TG TG TG TG TG TG
112815 AT * 11 20/22 AT AT AT AT AT AT GT AC AT AT AT
113818 AC * 10 19/20 AC AC AC AC AC AC AC AC AC AG
121195 AT * 10 18/20 AT AT AT AT CT AC AT AT AT AT
121383 TG * 10 18/20 TG CG TG CG TG TG TG TG TG TG
122446 CT * 10 19/20 CT CT CT CT CT CT CT CT CT TT
122987 GA * 11 20/22 GA GA GA GA GA GA AA GA GA GC GA
123977 CA * 12 22/24 CA GA AA CA CA CA CA CA CA CA CA CA
124329 AT * 10 18/20 AT AT AT GT AT AT AA AT AT AT
129610 GT * 11 20/22 GT GG GT GT GC GT GT GT GT GT GT
134824 CA * 13 25/26 CA CT CA CA CA CA CA CA CA CA CA CA CA
140111 CT * 16 29/32 CT CT CT CT CT CT CT CT CT CT CT CT CT CT TG CA
142080 GT * 12 22/24 GT GT GT GT GT GT GT GT GG GT GT AT
143948 TG * 10 18/20 TG TG TG TG TG TG AG TG AG TG
147869 GA * 11 21/22 GA GA GA GA GA GA GA GA GA GG GA
148007 GT * 10 18/20 GT GC GT GC GT GT GT GT GT GT
148892 TG * 17 31/34 TG CG AG TG TG TG TG TG TG TG TG TG TG TG TG TG TT
149413 CA * 10 18/20 CA CA CA CA CA CA CA CA TA CT
154960 GT * 15 27/30 GT GT GT GT GT GT GT GT GT GT TT GT GT GC CT
155729 AG * 10 18/20 AG AG AG AG AG AA AA AG AG AG
162042 TG * 21 38/42 TG TG TG TG TG TG TG TC TG TG TG TT TG TG TG TG TG TG TG AG CG
163821 AT * 12 22/24 AT AC AT AT AA AT AT AT AT AT AT AT
173093 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT GC GA
173298 TC * 13 24/26 TC TC TC GC TC TC TC TC TC TC TC TC TG
177321 AT * 12 22/24 AT AT AT AT AT AT AT AT AT AA CT AT
179122 TG * 10 18/20 TG CA TG TG TG TG TG TG TG TG
194652 CA * 10 18/20 CA CA CA CA CA CA CA TA CC CA
199569 CA * 10 18/20 CA CA CA GA CA CA AA CA CA CA
200345 TG * 10 18/20 TG TG TG TG TT TG TG TG TG TT
235976 TG * 10 18/20 TG CG AG TG TG TG TG TG TG TG
238250 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG TG CA
260178 AT * 10 18/20 AT AT AT AT AT GT AT AT AT TT
262094 CA * 13 24/26 CA CA CT CA GA CA CA CA CA CA CA CA CA
268841 AT * 11 20/22 AT AT AT AT AA AT TT AT AT AT AT
280419 AT * 10 18/20 AT AT AT AT AT AT AT AT AT TA
284028 TG * 10 18/20 TG TG TG TG TG TG TG CG AG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 286782
Total number of repeats detected.............. 52
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 9 3 1 3 3 9 9 5 1 1 0 0
15 to 19 0 1 0 0 0 0 1 3 0 1 0 0
20 to 24 0 0 1 0 0 0 1 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 9 4 2 3 3 9 11 8 1 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
9 AT + 4 TA = 13
2 AG + 3 GA + 2 CT + 1 TC = 8
8 GT + 11 TG + 9 CA + 3 AC = 31
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295378|gb|AE003564.1|AE003564 Drosophila melanogaster genomic scaffold 142000013386050 section 51 of 54, complete sequence
Position Repeat Coverage Repeat
3444 AC * 11 20/22 AC GC AC AC AC AC AC AC AC AC AG
5212 AC * 11 20/22 AC TC AC AC AC CC AC AC AC AC AC
9053 AT * 18 33/36 AT AT TT AT AT AT AT AT AT AT AT AG AT AT AT AT AT TT
29072 AC * 10 18/20 AC AC AC AG AC AC AC AC AT AC
31114 GT * 11 21/22 GT GT GT GT GT GT GT GT GG GT GT
70878 GT * 15 28/30 GT GT GT GT GT GT GT GT GT GT GT GT GT CT CT
85531 GT * 11 20/22 GT AT AT GT GT GT GT GT GT GT GT
94824 TA * 20 36/40 TA CA TA TA TA TA AA TA TA TA TA TA TA TA TA CA TA TA TA GA
100683 CA * 10 18/20 CA CA CC CA CA CA CA CA CA CG
104166 AT * 12 22/24 AT AT AT AT AT AT AT GT AT AT GT AT
114291 TG * 10 18/20 TG TG TG TG AG TG TG TG TG TT
115894 GT * 11 20/22 GT GT GT GC GG GT GT GT GT GT GT
139376 TG * 10 18/20 TG TG TG TG TT TG TG TG TA TG
153565 GT * 10 18/20 GT GA CT GT GT GT GT GT GT GT
158393 CA * 11 20/22 CA CA CA CA CA AA CG CA CA CA CA
158841 CA * 10 18/20 CA CA CG CA CA CA CA CA CA CT
158889 AC * 10 18/20 AC AC AC AC AC AC AC AT AC TC
162862 AC * 15 27/30 AC AC AC AC AC AC AC AC AC AC AC AC AC CT AG
183373 AC * 10 18/20 AC AC AC AC AC AC AA AC GC AC
188633 AC * 10 18/20 AC AC AC TC AC AC AC AC AT AC
189013 GA * 12 22/24 GA GA GA AA GA GA GA GT GA GA GA GA
234444 AC * 14 26/28 AC AC AC AC AC AC AC AC AC AC AC AC GC TC
234959 GT * 10 18/20 GT GT GC GT GT GT GT GT GT AT
244863 AC * 10 18/20 AC AC AC AC AC AC AC AC CC CC
256705 TA * 13 24/26 TA TA TA AA TA TA TA TA TA TA TA TA CA
259596 TG * 16 30/32 TG TG TG TG TG TG TG TG TG TG TG TG TG CG TG TC
262213 TG * 10 18/20 TG CG TG TG TG TG TG TC TG TG
273925 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AC AT GC
275165 CT * 13 25/26 CT CC CT CT CT CT CT CT CT CT CT CT CT
280143 AC * 10 18/20 AC AC TC AC TC AC AC AC AC AC
280164 CA * 11 20/22 CA CA CA CA CA CA GG CA CA CA CA
286642 GT * 11 20/22 GT GT GT AT GT GT GT GT GT GT AT
301616 CA * 16 29/32 CA CA CA CA CA CA CA CA CA CA CA CA CG AA CA CC
-----------------------------------------------------------------------------------------
Total sequence length......................... 301840
Total number of repeats detected.............. 33
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 1 0 1 10 4 3 6 0 1 0 0
15 to 19 1 0 0 0 1 1 1 1 0 0 0 0
20 to 24 0 1 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 2 0 1 11 5 4 7 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 2 TA = 4
0 AG + 1 GA + 1 CT + 0 TC = 2
7 GT + 4 TG + 5 CA + 11 AC = 27
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295346|gb|AE003563.1|AE003563 Drosophila melanogaster genomic scaffold 142000013386050 section 50 of 54, complete sequence
Position Repeat Coverage Repeat
5500 TA * 10 18/20 TA TA TA TA TA TA TA TG TA TC
10551 TG * 12 22/24 TG TG TG TG TC TG TG TG TG TG TG TA
29616 CA * 12 22/24 CA CA CA CA CT CT CA CA CA CA CA CA
60328 TA * 10 18/20 TA TA TA TA TA TA TA TA TT TT
99842 TG * 11 20/22 TG TG TG TG TT TT TG TG TG TG TG
114877 TG * 11 21/22 TG TG TG TG TG TG TG TG TT TG TG
127607 CA * 12 22/24 CA AA CA CA CA CA CA CA AA CA CA CA
145145 GT * 12 22/24 GT AT AT GT GT GT GT GT GT GT GT GT
223580 TA * 21 39/42 TA TG TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA CA
227577 AC * 17 31/34 AC GC AC AC AC AA AC AC AC AC AC AC AC AC AC AA AC
272478 TG * 11 20/22 TG TG GG TA TG TG TG TG TG TG TG
275546 GA * 12 23/24 GA AA GA GA GA GA GA GA GA GA GA GA
276420 CA * 10 18/20 CA CA CA CT CA CA CA CA CA CT
-----------------------------------------------------------------------------------------
Total sequence length......................... 277325
Total number of repeats detected.............. 13
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 2 0 1 0 3 4 1 0 0 0 0
15 to 19 0 0 0 0 1 0 0 0 0 0 0 0
20 to 24 0 1 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 3 0 1 1 3 4 1 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 3 TA = 3
0 AG + 1 GA + 0 CT + 0 TC = 1
1 GT + 4 TG + 3 CA + 1 AC = 9
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295332|gb|AE003562.1|AE003562 Drosophila melanogaster genomic scaffold 142000013386050 section 49 of 54, complete sequence
Position Repeat Coverage Repeat
3895 AC * 10 18/20 AC CA AC AC AC AC AC AC AC AC
4033 GT * 11 20/22 GT GT GT GT GT GT GT AT GC GT GT
4181 CA * 11 21/22 CA CT CA CA CA CA CA CA CA CA CA
9346 TA * 17 31/34 TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA CA TG
12216 TA * 16 30/32 TA TA TA TA TA TA AA TA TA TA TA TA TG TA TA TA
19675 AC * 11 20/22 AC AC AC AA AC AC AC AC AC AG AC
19950 AC * 10 18/20 AC AC AC AC AC AC AC AT GC AC
23745 AT * 16 29/32 AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT GG
28475 TG * 13 24/26 TG TG TG CA TG TG TG TG TG TG TG TG TG
28663 AC * 10 18/20 AC AT GC AC AC AC AC AC AC AC
36915 CA * 10 18/20 CA CA TA CA CA CA CA CA CA CG
107936 TG * 12 22/24 TG CG TG TG TG TT TG TG TG TG TG TG
108201 TG * 11 20/22 TG TG TG TG TG TG TC TG TG GG TG
114827 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG TG CA
133421 CA * 12 23/24 CA AA CA CA CA CA CA CA CA CA CA CA
137578 TA * 10 18/20 TA TA TA TA TA TA TA AA TA TT
163813 TG * 11 21/22 TG TG TG TG TG TG TG TG TG TG TT
170038 AT * 11 20/22 AT AG AT AT AC AT AT AT AT AT AT
172313 TA * 10 18/20 TA TA TA TA TA TA TA TA TT TT
183864 GT * 10 18/20 GT TT AT GT GT GT GT GT GT GT
191808 CA * 10 19/20 CA CA CA CT CA CA CA CA CA CA
194068 AT * 10 19/20 AT AT AT AT AT AT AT AT AA AT
238563 AC * 10 18/20 AC AC AC AC AC AC AC AC AC TT
-----------------------------------------------------------------------------------------
Total sequence length......................... 249584
Total number of repeats detected.............. 23
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 2 0 0 5 4 5 2 0 0 0 0
15 to 19 1 2 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 4 0 0 5 4 5 2 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 4 TA = 7
0 AG + 0 GA + 0 CT + 0 TC = 0
2 GT + 5 TG + 4 CA + 5 AC = 16
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295317|gb|AE003561.1|AE003561 Drosophila melanogaster genomic scaffold 142000013386050 section 48 of 54, complete sequence
Position Repeat Coverage Repeat
2827 TG * 12 22/24 TG TA TG TG TG TG TG TG TG TG TG GG
5450 TA * 11 20/22 TA AA TA TA TA TA TA TA TA TA AA
15652 GT * 11 20/22 GT GT GT GT CT GT GT GT GT GT GA
23347 TG * 12 22/24 TG TC AG TG TG TG TG TG TG TG TG TG
24417 TG * 10 18/20 TG TG TG TT TG TG TG TG TG TA
25595 TC * 11 20/22 TC TA TC TC TC TT TC TC TC TC TC
27412 TG * 12 22/24 TG TG TG TG TT CG TG TG TG TG TG TG
28517 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC AC TC AT
42566 AT * 10 18/20 AT GT AT AT AT AT AT AT AT AC
43905 TG * 11 21/22 TG TG TG TG TG TG TG TG AG TG TG
69582 GT * 11 20/22 GT GT GT GA GT GT GT GT GT GT TT
70629 AC * 11 20/22 AC CC AC AC AC AC AA AC AC AC AC
74812 GT * 13 24/26 GT AT GT GT GT GT GT GT GT GT GT GC GT
78089 TG * 13 24/26 TG TG CG AG TG TG TG TG TG TG TG TG TG
86548 AC * 11 20/22 AC AC GC AC AC AC AT AC AC AC AC
87662 TG * 10 19/20 TG TG TG TG TG TG TG TG TG CG
90530 TC * 11 20/22 TC TC TC TC TC TC TC TA TC TC TT
90884 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT TT GG
99030 TA * 13 24/26 TA TA TA TA TA TA TA TA TA TA TT TA TT
104643 AT * 10 18/20 AT AT AT AT AT AT AT AT AT TG
117270 AT * 10 18/20 AT AT AT AT AT AT TT AT AT CT
126943 TA * 10 18/20 TA TA TA TA TA TA TA TA CT TA
127537 GT * 14 26/28 GT GG GT GT GT GC GT GT GT GT GT GT GT GT
129094 GT * 11 20/22 GT GT GT GG GT GT GT GT AT GT GT
144044 AT * 10 18/20 AT AT AT AA AT AT AT AA AT AT
150375 TA * 10 18/20 TA TA TA TA TG TA TG TA TA TA
156723 AG * 10 18/20 AG AG AG AG AG AG AG TG AA AG
181071 GT * 10 18/20 GT GT GT GC GT GC GT GT GT GT
195220 TA * 17 31/34 TA TA TA TA TA TA TA TA TA TA TA TA TA TA CA CA AA
202488 AT * 12 23/24 AT AT AA AT AT AT AT AT AT AT AT AT
206787 CT * 18 33/36 CT CG CT CG CT CT CT CT CT CT CT CT CT CT CT CT CT GT
210509 TA * 15 27/30 TA AA TA TA TA TA TA AA TA TA TA TA TA TA CA
212873 TA * 10 18/20 TA TA TA TA TA TA TA TA TA CC
223188 AT * 11 20/22 AT AT GT AT AT GT AT AT AT AT AT
223989 TA * 10 18/20 TA AA GA TA TA TA TA TA TA TA
235690 AC * 11 20/22 AC AC AC AT AC AC AC AC AC AC AT
240526 GA * 12 22/24 GA GA CA GC GA GA GA GA GA GA GA GA
243811 TG * 13 24/26 TG TG AG TG TG TA TG TG TG TG TG TG TG
246936 TA * 16 30/32 TA TA TA TT TA TA TA TA TA TA TA TA TA TA TA TG
265782 TG * 11 20/22 TG TG CT TG TG TG TG TG TG TG TG
270086 AT * 12 23/24 AT AT AT AT AT AT AT AT AT AT AT AC
273855 CA * 13 24/26 CA CA CA CA CA CA AA CG CA CA CA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 274307
Total number of repeats detected.............. 42
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 7 6 1 1 4 1 9 7 2 0 0 0
15 to 19 0 3 0 0 0 0 0 0 0 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 7 9 1 1 4 1 9 7 2 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
7 AT + 9 TA = 16
1 AG + 1 GA + 1 CT + 2 TC = 5
7 GT + 9 TG + 1 CA + 4 AC = 21
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295278|gb|AE003560.1|AE003560 Drosophila melanogaster genomic scaffold 142000013386050 section 47 of 54, complete sequence
Position Repeat Coverage Repeat
1374 CA * 10 18/20 CA CA CA CA CA CA CA CA CA GG
5092 GT * 13 24/26 GT GA GT GT AT GT GT GT GT GT GT GT GT
5303 AG * 10 18/20 AG AG AA AG AG AG AG AC AG AG
7939 AC * 11 20/22 AC AC AC AT AC AC AC AC AC AC AA
9517 TG * 10 18/20 TG TA TG TG TG TG TG TG TG TT
9553 TG * 10 18/20 TG TG TG TG TG TG TG TG CG CG
13026 GT * 11 21/22 GT GT GT GT GT GT GT GT GT GT GG
16290 AT * 10 18/20 AT AT AC AT AT AT AT AC AT AT
18251 CA * 15 27/30 CA CA CA CA CA CA CA CA CA CA CT CT CA CA GA
19585 GT * 11 20/22 GT GC GT GT GT GT GT GT GT GT GA
22801 AT * 11 20/22 AT AT AT AT AC AT AT AT AT AT TT
24740 AT * 14 26/28 AT AT AT AG AT AT AT AT AT AT AT AT AT AC
31526 AC * 12 22/24 AC GC AA AC AC AC AC AC AC AC AC AC
32467 CA * 10 18/20 CA CA CA CA CT CA AA CA CA CA
33581 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GC GT GA
37160 TA * 10 19/20 TA TA TA TT TA TA TA TA TA TA
52885 AG * 10 19/20 AG AG AG AG AA AG AG AG AG AG
59784 TG * 18 33/36 TG TA TG TG TG TG TG TG TG TG TG TG TG TG TG TG TT TA
84060 AC * 11 20/22 AC AC AT GC AC AC AC AC AC AC AC
121449 AC * 20 36/40 AC AC AC CC AC TC AC AC AC AC AC AC AC AC AC AC AC AC AC TG
133177 TA * 12 22/24 TA TA TA AA TA AA TA TA TA TA TA TA
137217 TG * 10 18/20 TG TG TG TG TG TG TG AG TG TT
138818 AG * 10 18/20 AG AG GG AT AG AG AG AG AG AG
154430 TG * 11 20/22 TG TT TG TG TG TG TG TG TG TG TT
157226 TG * 11 20/22 TG TG TC TG TG TG TG GG TG TG TG
166545 AC * 10 19/20 AC AC AC AC AC AT AC AC AC AC
168132 CA * 10 18/20 CA AA CA CA CA CG CA CA CA CA
172454 AC * 13 24/26 AC CC GC AC AC AC AC AC AC AC AC AC AC
172816 CA * 10 18/20 CA CA CA CA CA CA CA CA CA TG
182446 AT * 10 18/20 AT AT AT GT AT AT AT GT AT AT
191035 AC * 10 18/20 AC AC AC AC AC AC AC AT AC TC
192224 TA * 12 22/24 TA TA TA TA TA TT TA TA TA TA TC TA
199931 TA * 10 18/20 TA TC TG TA TA TA TA TA TA TA
211690 AG * 15 27/30 AG AG AG AA AG AG AG AG AG AG AG AG AG CG CG
218871 TC * 10 18/20 TC TC TC TC TA TT TC TC TC TC
223067 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG AA
223340 AG * 10 18/20 AG AC AA AG AG AG AG AG AG AG
223361 GA * 13 25/26 GA GA GA GA GA GA GA GA GA GA GA AA GA
229513 GT * 15 27/30 GT GT GT GT GC GT GT GT TT GT GT GT GT GT GC
245052 AG * 14 26/28 AG AG AG AG AG AG AG AG AG AG CG AG AG GG
247218 TA * 12 22/24 TA TA TA TA TA TA TA TA TA TC CA TA
259965 TA * 13 24/26 TA AA TA TA TA TG TA TA TA TA TA TA TA
260799 GT * 11 20/22 GT GG TT GT GT GT GT GT GT GT GT
263683 CA * 11 20/22 CA CA GA GA CA CA CA CA CA CA CA
263933 GT * 10 18/20 GT GT GC GT GT GT GT GT GT TT
265775 AG * 13 24/26 AG AG AG AG AG AG AA AG AG AG AG TG AG
274947 AT * 17 31/34 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA TA AT
283396 TG * 12 22/24 TG TG TG TG TG TG CG CG TG TG TG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 285495
Total number of repeats detected.............. 48
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 6 6 1 6 5 7 6 1 0 0 0
15 to 19 1 0 1 0 0 1 1 1 0 0 0 0
20 to 24 0 0 0 0 1 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 6 7 1 7 6 8 7 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 6 TA = 11
7 AG + 1 GA + 0 CT + 1 TC = 9
7 GT + 8 TG + 6 CA + 7 AC = 28
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295229|gb|AE003559.1|AE003559 Drosophila melanogaster genomic scaffold 142000013386050 section 46 of 54, complete sequence
Position Repeat Coverage Repeat
24522 TA * 13 24/26 TA TA TA TT TG TA TA TA TA TA TA TA TA
40872 TA * 10 18/20 TA TA TA TA TA TA TA TA TG TG
44015 TG * 10 18/20 TG AA TG TG TG TG TG TG TG TG
46059 GT * 11 20/22 GT GT GA AT GT GT GT GT GT GT GT
55508 TG * 10 18/20 TG TC GG TG TG TG TG TG TG TG
63933 CA * 12 22/24 CA CG CA GA CA CA CA CA CA CA CA CA
70889 CA * 16 30/32 CA CA CA CA CA CA CA CA CA CA CA CA TA CA CA TA
110352 GT * 11 20/22 GT GT GC AT GT GT GT GT GT GT GT
113661 AC * 10 18/20 AC GC AC AC AT AC AC AC AC AC
125360 AT * 10 18/20 AT AT AT AT AT TT TT AT AT AT
134022 TG * 10 18/20 TG TG TG TG TG TG TG TT TG GG
159958 TG * 10 18/20 TG AG TG TG TG TG TG TG TG TA
163942 AC * 10 18/20 AC AC AC AC AC AC AC AC AC TG
164842 TG * 12 22/24 TG TT TG TG TG CG TG TG TG TG TG TG
167647 CA * 13 24/26 CA CA CA CA CA CA CA TA CA CA CA CG CA
171955 GT * 10 18/20 GT GT GT GC AT GT GT GT GT GT
178443 CA * 13 24/26 CA CG CA CT CA CA CA CA CA CA CA CA CA
178920 GT * 12 22/24 GT GT GA GT GT AT GT GT GT GT GT GT
179721 GT * 13 24/26 GT GT GT GT GT GC GT GT GT GT GT GT AT
185571 TG * 10 18/20 TG TG TG TG TT TG TG TG TG TT
191485 TA * 11 20/22 TA TA TC TA TG TA TA TA TA TA TA
194103 AT * 10 18/20 AT AT AT AT AT AT AT AT TT TT
196771 AC * 10 18/20 AC AC AC AC AT AC AT AC AC AC
198438 TA * 13 24/26 TA TA TA TA TA TA TA TT TA TT TA TA TA
201940 TG * 10 18/20 TG TG CG AG TG TG TG TG TG TG
203941 CT * 10 18/20 CT TT CT CT CT CT AT CT CT CT
215446 CA * 12 22/24 CA CA CA CA CA CA CA CA CG CG CA CA
215812 TA * 10 18/20 TA TA TA TG TA TA TA TG TA TA
218169 AT * 10 18/20 AT AT AT AT AT AT AT AT AA TT
222551 AT * 15 27/30 AT AT GT AT AT AT AT AT AT AT GT AT AT AT AG
224124 TA * 10 18/20 TA CA TA TA TA AA TA TA TA TA
247576 TA * 15 28/30 TA TA TA TA TA TA TA TG TA TA TA TA TA TA TG
253332 AG * 13 24/26 AG AG AC AG AG AG AG AG AG AG GG AG AG
259371 AC * 11 20/22 AC AA TC AC AC AC AC AC AC AC AC
260730 TG * 10 18/20 TG CG TG TG TG TG TG TG TG TT
264608 TG * 16 29/32 TG TG TA TG TG TG TG TG TG TG TG TT TG TG TT TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 269454
Total number of repeats detected.............. 36
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 6 1 0 4 4 8 5 0 1 0 0
15 to 19 1 1 0 0 0 1 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 7 1 0 4 5 9 5 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 7 TA = 11
1 AG + 0 GA + 1 CT + 0 TC = 2
5 GT + 9 TG + 5 CA + 4 AC = 23
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295193|gb|AE003558.1|AE003558 Drosophila melanogaster genomic scaffold 142000013386050 section 45 of 54, complete sequence
Position Repeat Coverage Repeat
7268 TA * 16 30/32 TA TA TA TA TA TA TA TA TA CA TA TA TA TA TA TG
16848 GT * 10 18/20 GT GT GT GT GT GT GT AT CT GT
50101 CA * 10 18/20 CA GA CA CA TA CA CA CA CA CA
60029 CT * 12 22/24 CT AT CT CT CT CT CT CT CT CT AT CT
106639 CA * 11 20/22 CA CA CA CA CT TA CA CA CA CA CA
145953 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AG AC
160788 CA * 10 18/20 CA CA CA TA CA CA CA CA CC CA
190970 AT * 10 18/20 AT AT AT AT AT AT AT AT AA GT
192764 CA * 39 71/78 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA GA TT TT CG TA
193812 GT * 20 36/40 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT TA CC
200533 GT * 10 19/20 GT GT GT GT GT GT GT GT AT GT
208215 CA * 16 30/32 CA AA TA CA CA CA CA CA CA CA CA CA CA CA CA CA
215421 TA * 12 22/24 TA TA TA TA TA TA TA TA TG TA TA TT
224383 TG * 10 18/20 TG TG TG TG TG TG CG TG TG GG
224416 TG * 12 22/24 TG TG TA TG TG TG TG TC TG TG TG TG
271916 TG * 10 18/20 TG TG CG TG TG TG TG TG AG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 273744
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 1 0 0 0 3 3 2 0 1 0 0
15 to 19 0 1 0 0 0 1 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 1 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 1 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 2 0 0 0 5 3 3 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 2 TA = 4
0 AG + 0 GA + 1 CT + 0 TC = 1
3 GT + 3 TG + 5 CA + 0 AC = 11
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295172|gb|AE003557.1|AE003557 Drosophila melanogaster genomic scaffold 142000013386050 section 44 of 54, complete sequence
Position Repeat Coverage Repeat
3351 AT * 11 20/22 AT AT AT AT AT AT AT AT AA AT AG
11380 AT * 10 18/20 AT AT AT GT AT AT AT AT AT AG
11449 AT * 10 18/20 AT AT AT AC AT AT AT AT AT TT
12986 CA * 10 19/20 CA CA CA AA CA CA CA CA CA CA
13721 TG * 11 20/22 TG TG TG TG TG TG TG TG TA TG TA
17146 TC * 20 36/40 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC GA TC TC CA
20672 GT * 17 31/34 GT GT GT GT GA CT GT GT GT GT GT GT GT GT GT GC GT
24904 GT * 15 27/30 GT GT GT GT GT GT GT GT GT GT GT GT GG GG GG
39268 AC * 10 18/20 AC AC AC AC TC AC AC AC AC AT
43590 TA * 10 18/20 TA GA TA TA TA TA CA TA TA TA
48073 GA * 10 18/20 GA GA GA GA AA GA GA GA GA GT
50895 AC * 16 29/32 AC GC AC AC AC AC AA AC AC AC AC AC AC AC AC GC
55025 AT * 12 22/24 AT AT AT AT AT AT AT AT AT AC AA AT
56054 AT * 10 18/20 AT AC AT AT AT AT AT AT AT AG
67141 AT * 14 26/28 AT AT AT AT GT AT AT AT AT AT AT AT GT AT
99990 TA * 12 22/24 TA AA CA TA TA TA TA TA TA TA TA TA
166474 TG * 10 19/20 TG TG TG TG TG TG TG GG TG TG
173782 CT * 11 20/22 CT CT CT CA CT CT CT CT CT CA CT
191094 AC * 12 22/24 AC AC TC CC AC AC AC AC AC AC AC AC
196199 TC * 12 22/24 TC CC TC CC TC TC TC TC TC TC TC TC
197024 AT * 10 18/20 AT AT AT AT AT AT AT AT GT AA
217366 TC * 10 18/20 TC TC TC TG TC GC TC TC TC TC
222974 GA * 10 18/20 GA GA AA GA GA GT GA GA GA GA
227822 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TT GG
229493 AG * 11 20/22 AG AG AG TG AG AG AG AG AG AG AT
232724 TG * 12 22/24 TG TG TC TG TG TG TG TG CG TG TG TG
235127 AC * 10 18/20 AC AC AC AC CC AC AC AA AC AC
238342 TA * 10 18/20 TA TA TA CA TA TA TA TA CA TA
242156 GT * 10 18/20 GT GT GT GT GT CT GT GT GT GA
246285 TG * 15 28/30 TG TG TG TG TC TG TG TG TG TG TG TG TG TG GG
258621 AT * 11 20/22 AT AT AT AT AT AT AT AT AT TA AT
265859 GT * 13 24/26 GT GT GT GC GT GT GT GT GT GT GT GT CT
268754 AT * 10 18/20 AT TT AT CT AT AT AT AT AT AT
277508 AG * 12 22/24 AG AG AC AG AG AG AG AA AG AG AG AG
-----------------------------------------------------------------------------------------
Total sequence length......................... 286418
Total number of repeats detected.............. 34
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 9 3 2 2 3 1 4 2 2 1 0 0
15 to 19 0 0 0 0 1 0 1 2 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 1 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 9 3 2 2 4 1 5 4 3 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
9 AT + 3 TA = 12
2 AG + 2 GA + 1 CT + 3 TC = 8
4 GT + 5 TG + 1 CA + 4 AC = 14
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295117|gb|AE003556.1|AE003556 Drosophila melanogaster genomic scaffold 142000013386050 section 43 of 54, complete sequence
Position Repeat Coverage Repeat
1168 GT * 12 23/24 GT GT GT GT GT GT GT GT GT GT GT GC
1315 CT * 13 24/26 CT CC CT CC CT CT CT CT CT CT CT CT CT
5510 AG * 10 18/20 AG AG AG AG AG AA AG AG AT AG
59319 GT * 11 20/22 GT GT GT GT GT GT GT GT GT GT TG
64633 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TT TT
66271 TG * 16 29/32 TG TT TG TG TG TG TG TG TG TG TG TG TG CG TG GG
66526 AT * 10 19/20 AT AT AT AT AT AT AT GT AT AT
68775 TG * 11 20/22 TG TA TG TG TG TG TG TG GG TG TG
71298 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CT TA
72869 AC * 12 22/24 AC AC AC AC AC AC GC AC AC AC AT AC
88548 AT * 10 19/20 AT AT AC AT AT AT AT AT AT AT
90018 GA * 13 24/26 GA GA AA GC GA GA GA GA GA GA GA GA GA
90121 GT * 10 18/20 GT GT GT GT GT GT GT GA GT GC
94594 AC * 12 22/24 AC AC AC AC AC AC AC AC GC AC AC AA
103654 AT * 11 20/22 AT AT AT AT AT AT AT AT AT GA AT
109112 AC * 11 20/22 AC AA AC GC AC AC AC AC AC AC AC
119400 TA * 10 18/20 TA TA TA TG TG TA TA TA TA TA
128327 AT * 10 18/20 AT AT AT GT AT AT AT AT AC AT
146187 AC * 10 18/20 AC AC AC AC AC AC AC CC AA AC
217208 CA * 10 18/20 CA CA CA CG CA CA CA CA CA CC
219574 TA * 11 20/22 TA TA TA TA TA TA TA TA TA CA TT
236455 CA * 10 18/20 CA GA CA CA GA CA CA CA CA CA
269318 AC * 10 18/20 AC AC AC AC AC AC AA AT AC AC
-----------------------------------------------------------------------------------------
Total sequence length......................... 281146
Total number of repeats detected.............. 23
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 2 1 1 5 3 2 3 0 1 0 0
15 to 19 0 0 0 0 0 0 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 2 1 1 5 3 3 3 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 2 TA = 6
1 AG + 1 GA + 1 CT + 0 TC = 3
3 GT + 3 TG + 3 CA + 5 AC = 14
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295064|gb|AE003555.1|AE003555 Drosophila melanogaster genomic scaffold 142000013386050 section 42 of 54, complete sequence
Position Repeat Coverage Repeat
10006 GT * 14 26/28 GT GT GT GT CC GT GT GT GT GT GT GT GT GT
33819 TA * 10 18/20 TA TA TA TA CA TA TA TA CA TA
34361 AT * 11 20/22 AT GT AC AT AT AT AT AT AT AT AT
37439 AT * 13 25/26 AT AT AT AT AT AT AT AT AT AT AT AT AA
58524 GT * 10 18/20 GT GT GT GT GT GT GT GT GT TA
59156 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG CG GG
60432 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GT AG GT GT
69518 TA * 12 22/24 TA GA TA TA TG TA TA TA TA TA TA TA
82616 AT * 11 20/22 AT AT AT AT GT AT AT TT AT AT AT
103560 GA * 13 25/26 GA GA GA GA GA GA GA GA GA GA GA GC GA
103618 GA * 11 20/22 GA CA GT GA GA GA GA GA GA GA GA
109670 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG AG TG CG
110689 CT * 10 18/20 CT CT CT CT CT CT CT CT CT TA
117712 CT * 10 18/20 CT CT CT CT CT CT CT CT CT TA
119163 TA * 10 18/20 TA TA TA TA TA TA TA TT TA TG
142484 TA * 10 18/20 TA TA TA TA TA TA AA TA TG TA
156016 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GT GT GT TA
158243 TA * 10 18/20 TA TA TA TG TA TA TA TC TA TA
158397 AC * 36 65/72 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AT AC AT AC AT AT AT GG
159858 CT * 15 27/30 CT TT TT CT CT CT CT CT CT CT CT CT CT CT GT
159888 GT * 11 21/22 GT GT GT GT GT AT GT GT GT GT GT
164774 AC * 10 18/20 AC AC AC AC AC AC AC AG GC AC
172827 TG * 11 20/22 TG TG TG TG TG TG TG TG CG TT TG
183091 TA * 12 22/24 TA TT TA TA AA TA TA TA TA TA TA TA
216668 AT * 10 18/20 AT AT AT AT AT GT AT AT AT AG
232742 TA * 13 24/26 TA TG TA TA TA TA CA TA TA TA TA TA TA
233273 AT * 11 20/22 AT AT AT GT AT AT AT GT AT AT AT
233519 CT * 11 21/22 CT CT CT AT CT CT CT CT CT CT CT
235086 AT * 12 22/24 AT AT AT AC AT AC AT AT AT AT AT AT
235903 AC * 12 22/24 AC AC AT AA AC AC AC AC AC AC AC AC
248276 AT * 10 18/20 AT AT AT CC AT AT AT AT AT AT
272705 AT * 12 22/24 AT GT AT AT AT AT AT AT CT AT AT AT
279629 TG * 11 20/22 TG TG TG TG TG TG TG TG CT TG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 281936
Total number of repeats detected.............. 33
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 8 7 0 2 2 0 4 5 0 3 0 0
15 to 19 0 0 0 0 0 0 0 0 0 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 1 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 8 7 0 2 3 0 4 5 0 4 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
8 AT + 7 TA = 15
0 AG + 2 GA + 4 CT + 0 TC = 6
5 GT + 4 TG + 0 CA + 3 AC = 12
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295028|gb|AE003554.1|AE003554 Drosophila melanogaster genomic scaffold 142000013386050 section 41 of 54, complete sequence
Position Repeat Coverage Repeat
2337 GT * 11 20/22 GT GT GT CT GT GT GC GT GT GT GT
11678 TA * 11 20/22 TA TG TA TT TA TA TA TA TA TA TA
16911 CA * 20 36/40 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA TA CT GA CC
24072 TA * 12 22/24 TA TT TA TG TA TA TA TA TA TA TA TA
32573 TA * 15 27/30 TA TA TA TG CA TA TA TA TA TA TA TA TA TA CA
46318 AT * 11 20/22 AT AT GC AT AT AT AT AT AT AT AT
68679 GT * 10 18/20 GT GT TT GT GT GT GT GT CT GT
74194 AC * 10 18/20 AC AA AC AC AC AC AC TC AC AC
128568 TA * 13 25/26 TA TA TA GA TA TA TA TA TA TA TA TA TA
135944 AG * 11 20/22 AG AC AG AG AG AG AG AG AG AG AC
199399 TA * 10 18/20 TA AA TA TA CA TA TA TA TA TA
223543 TG * 11 20/22 TG CG TG TG TG TG TT TG TG TG TG
226400 TA * 14 26/28 TA TA TA TA TG TA TG TA TA TA TA TA TA TA
226639 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GC GT GC
-----------------------------------------------------------------------------------------
Total sequence length......................... 285729
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 5 1 0 1 0 1 3 0 0 0 0
15 to 19 0 1 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 1 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 6 1 0 1 1 1 3 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 6 TA = 7
1 AG + 0 GA + 0 CT + 0 TC = 1
3 GT + 1 TG + 1 CA + 1 AC = 6
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7294982|gb|AE003553.1|AE003553 Drosophila melanogaster genomic scaffold 142000013386050 section 40 of 54, complete sequence
Position Repeat Coverage Repeat
1472 CA * 12 22/24 CA TA CA CG CA CA CA CA CA CA CA CA
6163 CA * 10 18/20 CA CA CA AA CA CA CA CA CG CA
6743 TG * 10 18/20 TG TG TG TG TG TG TG TC TG CG
7727 GT * 11 20/22 GT GT TT AT GT GT GT GT GT GT GT
8477 GT * 10 18/20 GT GT GT GC GT GT GT GA GT GT
8921 TG * 16 29/32 TG TG TT TG TG TG TG TG TG TG TG TG TG TG TA TT
10145 CA * 10 18/20 CA CA CA CA CA CA CA CA CA GG
10554 AC * 12 22/24 AC AC AC AC AC AC AC AC AG AC AC AT
10784 CA * 11 20/22 CA CA CA CA CA CA CA CT CA CA CT
12323 CA * 12 23/24 CA CC CA CA CA CA CA CA CA CA CA CA
15345 TG * 18 33/36 TG TG TG TG TG TG TG TG TG TG TG TG TG TC TG TG TT TT
18325 TA * 12 22/24 TA TA TA GA TA TA TA TT TA TA TA TA
24943 CA * 10 18/20 CA TA CC CA CA CA CA CA CA CA
32117 CA * 10 18/20 CA CA CA CT CA CA CC CA CA CA
32479 AT * 10 18/20 AT AT AT AT AT AT TT AC AT AT
32522 AT * 13 25/26 AT AT AT AT AT AT AT AA AT AT AT AT AT
33470 CT * 18 33/36 CT CT CT CT CT CT CT CT CT CC CT CT CT CT CT CT TT TT
33977 TC * 11 20/22 TC TC TC TA TC TC TC TC TC TC AC
34005 AC * 10 18/20 AC AC AC AC AC TC AC AC TC AC
38217 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AT AT
39829 AT * 16 29/32 AT AT AC AT AT AT AT AT AT AC AT AT AT AT AT TT
40167 AC * 11 20/22 AC AC AC AC AC AC AC AC AG AC AA
40240 AT * 10 18/20 AT AT AT AT AT AT AT TC AT AT
61108 GA * 10 18/20 GA GA GG GA GA GA GC GA GA GA
61292 GA * 13 24/26 GA CA GA GA GA GA GA GA GA GA GA GA AA
61910 TC * 12 22/24 TC TC TC TC TC TC TC GC TC TC TC TT
63590 CA * 10 18/20 CA CA CA CA CA CA CA CA CA AC
63973 TG * 10 18/20 TG TG TG CA TG TG TG TG TG TG
64343 TG * 10 18/20 TG TT TG TG TG TG TG TG TG TA
66548 AC * 12 23/24 AC AC AC AC AC AC AC AC TC AC AC AC
71054 TG * 13 24/26 TG TG TG TG TG TG TT TG TG TG TG TT TG
77225 CA * 13 24/26 CA CA CA CA CA CA CA CC AA CA CA CA CA
77765 AT * 11 20/22 AT AT AT AT AT CT AT AT AT CT AT
78616 AC * 12 22/24 AC AC AC AC AC AC AC AC CC AC GC AC
83662 AC * 17 31/34 AC AC AC AC AC AC AC AC AC AC AC AG AG AC GC AC AC
85985 TA * 10 18/20 TA TA AT TA TA TA TA TA TA TA
86092 AC * 14 26/28 AC AA AC AC AC CC AC AC AC AC AC AC AC AC
88317 TA * 12 22/24 TA AA AA TA TA TA TA TA TA TA TA TA
90993 TA * 11 20/22 TA TA TA TA TA TA CA TA TA TA TT
91809 AT * 13 24/26 AT AT AT AC AT AT AT GT AT AT AT AT AT
131213 TG * 10 18/20 TG CG TG TG TG TG TG TG TG CG
133461 AT * 11 20/22 AT AT AT AT AT AT AT AT AT TT GT
138379 TG * 10 18/20 TG TG TG TG TG TG TG TA AG TG
169892 AG * 13 24/26 AG AG AG AG AG AG AG AG AG AG TG AT AG
198532 TA * 10 18/20 TA TA TA TA TT TA TA TA TA CA
200570 TA * 10 18/20 TA TA TA TA TA TA TA TA TG CA
210428 GA * 11 20/22 GA TA GA GA GA GA GA GA GA GA GG
237620 GT * 10 18/20 GT GT GT GT GT GT GT GT GC GC
251315 TA * 13 24/26 TA TA TA TA TA TA TG TA CA TA TA TA TA
251547 AT * 11 21/22 AT AA AT AT AT AT AT AT AT AT AT
256781 TA * 10 18/20 TA TA CA TA TA TA TT TA TA TA
263434 CA * 10 18/20 CA CA CA CA CA CA CA CA CG AA
-----------------------------------------------------------------------------------------
Total sequence length......................... 287145
Total number of repeats detected.............. 52
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 7 8 1 3 7 10 6 3 2 0 0 0
15 to 19 1 0 0 0 1 0 2 0 0 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 8 8 1 3 8 10 8 3 2 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
8 AT + 8 TA = 16
1 AG + 3 GA + 1 CT + 2 TC = 7
3 GT + 8 TG + 10 CA + 8 AC = 29
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7294927|gb|AE003552.1|AE003552 Drosophila melanogaster genomic scaffold 142000013386050 section 39 of 54, complete sequence
Position Repeat Coverage Repeat
2431 TG * 15 27/30 TG CG TG TG TA TG TG TG TG TG TG TG TG TG AG
37942 GT * 12 22/24 GT GT GT GT GT GT GT GC GC GT GT GT
43321 AT * 13 24/26 AT AT AT AC AA AT AT AT AT AT AT AT AT
44943 CT * 10 19/20 CT CT CT CT CT CT CT CT CT CG
66430 TA * 10 18/20 TA TA TA TA CA TA TA TA CA TA
68996 TA * 10 18/20 TA TA TA TA CA GA TA TA TA TA
78047 AC * 10 18/20 AC AC AA AC AA AC AC AC AC AC
78418 AG * 11 21/22 AG AG AG AG AG AG AG AG AG CG AG
117343 TG * 10 19/20 TG TG TG TG TG TG TG TG AG TG
123477 TA * 11 20/22 TA TA TA TA TG TA TG TA TA TA TA
136207 TA * 10 18/20 TA TG TA TA TA AA TA TA TA TA
136414 TA * 12 22/24 TA TA TA TA TA TA TA TG TA TA CA TA
137667 AC * 12 22/24 AC AC AC AC AC AC AG AC AC AC AC AA
152921 AT * 12 22/24 AT AT GC AT AT AT AT AT AT AT AT AT
153161 AC * 10 18/20 AC AC AT AC CC AC AC AC AC AC
157370 AC * 11 20/22 AC TC TC AC AC AC AC AC AC AC AC
157511 GT * 10 18/20 GT GT GT GT GC GT GT GT GC GT
158316 AT * 10 19/20 AT AC AT AT AT AT AT AT AT AT
159721 CT * 11 20/22 CT CT CT CT CT CT CT CT TT CT TT
159881 TG * 10 18/20 TG TA TG TG TG TG TG TG TG GG
162486 CA * 11 20/22 CA TA CG CA CA CA CA CA CA CA CA
162657 TG * 13 24/26 TG TG TG TG TG TG TT TG TG TG TG TG GG
163694 TA * 11 20/22 TA CA TA TA CA TA TA TA TA TA TA
167161 TG * 11 21/22 TG TG TG TG TG TG TG TG TG GG TG
172895 CA * 15 28/30 CA CA CG CA TA CA CA CA CA CA CA CA CA CA CA
174065 TG * 13 25/26 TG TG TG TG TG TG TG TG TG TG TG TG GG
174228 AC * 11 20/22 AC AC AC GC AC AC CC AC AC AC AC
186944 TG * 11 20/22 TG TG TG CG TG TG TT TG TG TG TG
187849 TA * 10 18/20 TA TA TA TG TA TA TA TA AA TA
189304 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TT TA TG
195607 CA * 13 24/26 CA CA CT CA CA CG CA CA CA CA CA CA CA
195665 TG * 13 24/26 TG AG TG CG TG TG TG TG TG TG TG TG TG
198653 AT * 10 18/20 AT AT AT AT AT AA AT AC AT AT
208950 AC * 15 27/30 AC TC AC GC AC AC AC AC AC AC AC AC AC AC GC
209800 CT * 13 24/26 CT CA CT CT CT CT CT CT CT CA CT CT CT
213134 TG * 10 18/20 TG TG CG TG TG TG TG TT TG TG
213389 TG * 13 25/26 TG TG TG TG TG TG TG TG TG TG TG TG CG
213643 GT * 10 18/20 GT AT CT GT GT GT GT GT GT GT
221690 GT * 16 29/32 GT GT GT GT GT GT GT GT GC GT GT GC GT GT GG GT
227368 AC * 12 22/24 AC AC AC AC AC AC CC AC AC CC AC AC
229044 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CT GA
229652 TG * 14 26/28 TG TG TG TG TG TG TG TG TG TG TG TG TG CT
236941 TG * 13 24/26 TG TC TG TG TG TG TG TG TG TG TG TG AG
237878 CA * 10 18/20 CA TT CA CA CA CA CA CA CA CA
245885 TG * 12 22/24 TG TG TT TG TG TG TG TG TG TG TG TC
259769 GT * 11 20/22 GT AT GT GT GT GT GT GT GT AT GT
276969 GT * 10 18/20 GT GT GT GT GT GC GA GT GT GT
278275 TG * 16 29/32 TG TG TG TG TG TG TG TG CG TG TG TT TG TG TA TG
281793 AC * 12 22/24 AC AC AC AC AC AC AC TC AC AC AC AG
-----------------------------------------------------------------------------------------
Total sequence length......................... 286784
Total number of repeats detected.............. 49
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 7 1 0 7 4 13 5 0 3 0 0
15 to 19 0 0 0 0 1 1 2 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 7 1 0 8 5 15 6 0 3 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 7 TA = 11
1 AG + 0 GA + 3 CT + 0 TC = 4
6 GT + 15 TG + 5 CA + 8 AC = 34
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7294877|gb|AE003551.1|AE003551 Drosophila melanogaster genomic scaffold 142000013386050 section 38 of 54, complete sequence
Position Repeat Coverage Repeat
5300 AT * 10 18/20 AT GT AT AT AT AT AA AT AT AT
11526 TG * 10 18/20 TG TG TA TC TG TG TG TG TG TG
25389 AT * 12 23/24 AT AT AC AT AT AT AT AT AT AT AT AT
28843 GT * 11 20/22 GT GC GT GT GT GT GT GT GT GT TT
45178 AT * 14 26/28 AT AG AT AT AT AT AT AT AA AT AT AT AT AT
46293 TG * 10 18/20 TG TG TG TG TG TG TG TG TT TT
67347 TG * 10 18/20 TG GG TG TG TG TG TG TG TG GG
68961 GT * 10 18/20 GT CT GT GT GT TT GT GT GT GT
69162 TG * 11 20/22 TG TG TG TG CG TG TG TG TG TA TG
72858 GT * 15 27/30 GT CT GT GT GT GA GT GT GT GT GT GT GT GT GC
75511 CT * 11 20/22 CT CT TT GT CT CT CT CT CT CT CT
78982 AC * 12 22/24 AC AC AC AC AC TC AC AC AA AC AC AC
84489 TC * 15 27/30 TC TC TC TC TC TC TC TC TC TC TC TC TC GC CT
87032 CT * 17 31/34 CT CT CT TT CT CT CT CT CT CT CT CC CT CT CT CT CG
133252 AT * 10 19/20 AT AT AT AT AT AT AT AT AT AN
173150 CA * 10 18/20 CA CG CC CA CA CA CA CA CA CA
188015 AC * 10 18/20 AC AC AC CC AC AC AC AC AC GC
194048 AG * 11 20/22 AG AT AG AG AG AG AG AG TG AG AG
206130 CA * 14 26/28 CA CA CA CA AA CA CA CA CA CA CA CA CA CT
208564 AT * 11 20/22 AT AT AT AT AC AT AT GT AT AT AT
212408 CA * 10 18/20 CA CA CA CA CA CA GA TA CA CA
213962 GT * 19 35/38 GT GT GT GT GT GC GT GT GT GT GT GT GT GT GT AT GT TT GT
237105 CA * 13 24/26 CA CA CA CA CG CA TA CA CA CA CA CA CA
237281 GT * 10 18/20 GT GT GT GT GT GT GT GT GC GG
239432 AT * 11 20/22 AT CT AT AT AT TT AT AT AT AT AT
240564 TC * 10 18/20 TC TC TC TC TC TC TC TC TT TT
244776 AT * 10 18/20 AT AT AT GT AT TT AT AT AT AT
262145 TA * 10 18/20 TA TA TA TA TG TA TA TA TA TG
262879 AT * 11 20/22 AT AT TT AT AT AT AT GT AT AT AT
268711 CA * 10 18/20 CA CA CA CA CA CA CA CA AA AA
270803 TA * 12 22/24 TA TA GA TA TA TA TA TA TA TA TA GA
285618 TA * 11 20/22 TA TA TA TA AA TA TA TA TA TG TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 285978
Total number of repeats detected.............. 32
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 8 3 1 0 2 5 4 3 1 1 0 0
15 to 19 0 0 0 0 0 0 0 2 1 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 8 3 1 0 2 5 4 5 2 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
8 AT + 3 TA = 11
1 AG + 0 GA + 2 CT + 2 TC = 5
5 GT + 4 TG + 5 CA + 2 AC = 16
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7294844|gb|AE003550.1|AE003550 Drosophila melanogaster genomic scaffold 142000013386050 section 37 of 54, complete sequence
Position Repeat Coverage Repeat
2520 GT * 11 20/22 GT AT GC GT GT GT GT GT GT GT GT
2724 CA * 18 33/36 CA CA CA CG CA CA CA CA CA CA CA CA CA CA TA CA CG CA
5009 CT * 10 18/20 CT CT CT CT CT CT TT TT CT CT
7644 TG * 10 18/20 TG AG AG TG TG TG TG TG TG TG
7671 GT * 10 18/20 GT GT GT GT GT GT GA GT GC GT
9172 CA * 13 24/26 CA CA CA CA CA CA CA AA CT CA CA CA CA
14789 TG * 10 18/20 TG AG TG TG TG TG GG TG TG TG
16969 TG * 10 18/20 TG TT TG TG TG TG TG TG TG TT
26981 GA * 10 18/20 GA GC GA AA GA GA GA GA GA GA
29806 CA * 11 20/22 CA CA CA CA CA CA CA AA CA CA CG
33431 GT * 18 33/36 GT GT GT GT GT GT GT GT GT GT GT GT GT GG CT GG GT GT
39941 CA * 15 27/30 CA CA CA CA CA CA CA CA CA CA CA CA TA TA TA
47802 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CG CA CA CT
52260 GT * 10 19/20 GT GT GT GT GT GT GT GT GT AT
64790 TG * 11 20/22 TG TG TT TG TG TG TG TG TG TG TT
71010 CA * 10 18/20 CA CT CA CA CA CA CA CA AA CA
77132 CA * 11 20/22 CA CA CA CA CA CA CC CA CA CA TA
97263 AT * 12 22/24 AT AT AT AT AG AT AT AT AT AT AT GT
97424 AT * 10 18/20 AT AA AG AT AT AT AT AT AT AT
97708 AT * 11 20/22 AT GT AT AT AT AT AT GT AT AT AT
98148 TA * 11 20/22 TA TG TA TG TA TA TA TA TA TA TA
100326 AT * 10 18/20 AT AT AT TT AT AT AT AT AT AA
111857 GT * 12 22/24 GT AA GT GT GT GT GT GT GT GT GT GT
114536 GT * 13 24/26 GT GT GT GT GT GG GT GA GT GT GT GT GT
133715 CA * 11 20/22 CA CG CA CA CA TA CA CA CA CA CA
139907 CT * 17 31/34 CT CT CT CT CT CT CT CT CT TT CT CT CT CT CA CT CC
144741 CA * 21 39/42 CA CA CA CA CA CA CA CA CA CA CA CA CA CA AA TA CA AA CA CA CA
151013 AT * 10 18/20 AT AT AC AT AT AC AT AT AT AT
152826 AC * 10 18/20 AC CC GC AC AC AC AC AC AC AC
155358 CA * 12 23/24 CA CA CA CA CA CA CA CA CA CG CA CA
156187 GT * 11 20/22 GT GT AT GT AT GT GT GT GT GT GT
158490 AT * 10 18/20 AT AC AT AT AT AT AT AT AT TT
166534 AT * 10 18/20 AT AT AT AT AT AT AT AT AC AA
195157 AT * 13 24/26 AT AT AT AT GT AT AT AT AT AT AT AG AT
195465 AT * 10 19/20 AT AT AT TT AT AT AT AT AT AT
203503 CA * 12 22/24 CA CA CA CA TA CA CA CC CA CA CA CA
209652 TA * 11 20/22 TA TA TA TA CA TA TA TA TA TA TG
212953 TA * 11 20/22 TA TA TA CA TA TA TA TA TA TA TC
214463 CA * 12 22/24 CA CT CA TA CA CA CA CA CA CA CA CA
232497 TA * 13 24/26 TA TA TA TA TA TA TA AA TA TA CA TA TA
244074 TG * 21 38/42 TG TG TG TG TG TG TG TG TG TG TG TG AG TG TG GG TG TG TC TG TC
245033 CA * 18 33/36 CA CA CA TA TA CA CA CA CA CA CA CA CA CA CA CA CA CT
245282 TG * 10 18/20 TG AG TG TG TG TG TG GG TG TG
247264 TA * 12 23/24 TA TA TA TA TA CA TA TA TA TA TA TA
247442 CA * 18 33/36 CA CG CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA TT
247804 TG * 15 28/30 TG TG TG TG TG TG TG TG TG TG TG TG TG GG GG
248030 AC * 13 24/26 AC AT AC GC AC AC AC AC AC AC AC AC AC
273851 TG * 17 31/34 TG TG TG AG TG TG TG TG TG TG TG TT TG TG TG TA TG
285394 GT * 10 18/20 GT GT GC GT TT GT GT GT GT GT
285755 TG * 10 18/20 TG TG TG TG TG TG TG CG TG AG
287106 TA * 17 31/34 TA TA TA TA CA TA TA TA TA TA TA TA TA AA TA TC TA
297544 AC * 10 18/20 AC AC AC AC AC AC AC AC TC GC
-----------------------------------------------------------------------------------------
Total sequence length......................... 298675
Total number of repeats detected.............. 52
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 9 5 0 1 3 9 6 7 0 1 0 0
15 to 19 0 1 0 0 0 4 2 1 0 1 0 0
20 to 24 0 0 0 0 0 1 1 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 9 6 0 1 3 14 9 8 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
9 AT + 6 TA = 15
0 AG + 1 GA + 2 CT + 0 TC = 3
8 GT + 9 TG + 14 CA + 3 AC = 34
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7294827|gb|AE003549.1|AE003549 Drosophila melanogaster genomic scaffold 142000013386050 section 36 of 54, complete sequence
Position Repeat Coverage Repeat
1742 AC * 11 20/22 AC AC AC AC AC AC AC GC AC AC GC
2347 TG * 12 22/24 TG TG TG GG CG TG TG TG TG TG TG TG
2437 CA * 13 24/26 CA CA GA CA CA CA CA CA CA CA CA CA TA
4798 AG * 18 33/36 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AA AG GA
12632 AT * 15 28/30 AT AT AT GT AT AT AT AT AT AT AT AC AT AT AT
22070 TA * 10 18/20 TA TA TA TA TA TA TA TA AA TT
23335 AT * 11 20/22 AT TT AT AT AT AT AT AT AT AT TT
34648 TA * 12 22/24 TA TA TG TA TA TA TA TA TA TA TA TT
37133 GA * 13 24/26 GA GC CA GA GA GA GA GA GA GA GA GA GA
39684 TG * 11 20/22 TG TG TG CG TG TG TG TG TG AG TG
42884 AT * 10 18/20 AT AT AT TT AT AT AT TT AT AT
49217 CA * 13 24/26 CA CC CA CA CG CA CA CA CA CA CA CA CA
54621 TC * 15 27/30 TC TC TC GC TC TC TC TC TC TG TC TC TC TC TT
56204 CA * 10 18/20 CA CA CA CA CA CA CA CA AG CA
58465 TG * 15 27/30 TG TT TG TG TG TG TA TG TG TG TG TG TG TG GG
60867 TG * 10 18/20 TG TG TG TG CG TG TT TG TG TG
61252 AC * 12 22/24 AC AC AC AC AC AC AC CC AC AC AC CC
63707 GT * 11 20/22 GT AA GT GT GT GT GT GT GT GT GT
67324 CA * 12 22/24 CA CA CA CA CA TA CA GA CA CA CA CA
68651 AC * 11 20/22 AC AC AC AC GC AC AC AC AC TC AC
69051 CA * 10 18/20 CA CG CA CG CA CA CA CA CA CA
77352 AT * 12 22/24 AT AT GG AT AT AT AT AT AT AT AT AT
90899 TC * 10 18/20 TC TC TA TC TC TC TC TT TC TC
103961 CA * 11 21/22 CA CC CA CA CA CA CA CA CA CA CA
108357 CT * 13 24/26 CT CT CT CT CT CT CT CT CT CT CA CT CA
124586 CA * 10 18/20 CA CA CA CA TA CA CA CA CA GA
147644 CA * 13 24/26 CA GG CA CA CA CA CA CA CA CA CA CA CA
152388 TA * 10 18/20 TA TA TA TA TA AC TA TA TA TA
155789 GT * 11 20/22 GT GC TT GT GT GT GT GT GT GT GT
173296 AC * 10 19/20 AC AC AT AC AC AC AC AC AC AC
176852 GT * 10 18/20 GT GT AT GT GT GT GT GT GT GC
215729 GT * 11 20/22 GT AT GT AT GT GT GT GT GT GT GT
217842 TG * 11 20/22 TG TG TG TG TG TG TG TG TG AG TC
218460 GT * 12 22/24 GT GT GT GT TT GT GT GT GT AT GT GT
225615 TG * 11 20/22 TG TG TG TG TG TG TC TG TG TA TG
232517 TG * 10 18/20 TG TG TG TG TC TG TG TC TG TG
236397 GT * 17 31/34 GT GT GT GT GT GT GT GT GT GT GT GC GA GT GT GT GG
237981 TG * 10 18/20 TG TG TG TA CG TG TG TG TG TG
248181 AT * 10 18/20 AT AT AT AT AC AT AT AT AC AT
248835 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG CG TC
252891 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AG GC
253678 TG * 10 18/20 TG AG TG TG AG TG TG TG TG TG
282234 AT * 15 27/30 AT AT AT TT AT TT AT AT AT AT AT AT AT AT TT
-----------------------------------------------------------------------------------------
Total sequence length......................... 300477
Total number of repeats detected.............. 43
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 3 0 1 5 8 9 5 1 1 0 0
15 to 19 2 0 1 0 0 0 1 1 1 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 6 3 1 1 5 8 10 6 2 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
6 AT + 3 TA = 9
1 AG + 1 GA + 1 CT + 2 TC = 5
6 GT + 10 TG + 8 CA + 5 AC = 29
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7294819|gb|AE003548.1|AE003548 Drosophila melanogaster genomic scaffold 142000013386050 section 35 of 54, complete sequence
Position Repeat Coverage Repeat
12436 TG * 14 26/28 TG TA TG TG TG TG TG TG TG TG TG TG TG GG
15175 AT * 10 18/20 AT AT AT AT AT AT AT AT TT TT
15822 AT * 12 22/24 AT AT AT AT AT AT GT AT AC AT AT AT
20237 TG * 16 29/32 TG TG TA TG TA TG TG TG TG TG TG TG TG TG TG TA
31717 TA * 11 20/22 TA AA TG TA TA TA TA TA TA TA TA
33974 TG * 12 22/24 TG TG TA AG TG TG TG TG TG TG TG TG
34097 CA * 11 20/22 CA TA CA TA CA CA CA CA CA CA CA
37387 TG * 12 22/24 TG TG TG TG TG TG TG CA TG TG TG TG
37991 GT * 17 32/34 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT AC
38912 AG * 15 27/30 AG AG AG AG AG AG AG AG AG AA AG AG AG AT GG
39516 TG * 13 24/26 TG TC TG TG TG TT TG TG TG TG TG TG TG
44173 TA * 10 18/20 TA TA TA TA TA TA TA TA AA AA
54597 TG * 10 18/20 TG CG TG TG TG TG TG TG TG TA
56714 TG * 10 18/20 TG TG TG TG TG TA TG TA TG TG
71439 AT * 10 18/20 AT GT AT AT AT AT AT AT GT AT
76958 TA * 12 22/24 TA CA TA TA TA TC TA TA TA TA TA TA
85274 GA * 15 27/30 GA GA GC GA GA GC GA GA GA GA GA GA GA GA GG
89174 GA * 11 20/22 GA GC GA GA GA GG GA GA GA GA GA
90442 CA * 10 19/20 CA CA CA CA CA CA CA CA CA TA
94697 AT * 10 18/20 AT AT AT AT AT AA AT AT AA AT
96603 TA * 15 27/30 TA TA TA CA TA TA TA TA TA CA TA TA TA TA TC
102561 CA * 13 24/26 CA CA CA CA CA CG CA CA CA CA AA CA CA
103145 TG * 11 20/22 TG TG TG TG TG GG TC TG TG TG TG
133046 CA * 15 28/30 CA CA CA CA CA CA CA CA CA CA CA CA CA AA TA
154432 AT * 10 18/20 AT AT AT AT AT AT AT TT AT AA
160045 CA * 14 26/28 CA CA CA CA CA CA CA CA CA CA TA CA CA TA
166040 TA * 10 18/20 TA TC TA TA TA TA TA TA TA TC
185086 CA * 14 26/28 CA CA CA CA CA CA CA CA CA CA CA CA CA TG
194788 GA * 11 20/22 GA GT GA GA GA GA GA GA GA GC GA
202578 AC * 11 20/22 AC AA AC AC AC AC TC AC AC AC AC
213833 AT * 11 20/22 AT AT AA AT AT AT AT AT TT AT AT
218009 TA * 11 20/22 TA TT TA TA TA TA CA TA TA TA TA
234317 TA * 10 18/20 TA TA AA TA TA TG TA TA TA TA
234503 TA * 11 20/22 TA TA TA TA CA TA CA TA TA TA TA
238659 AT * 11 20/22 AT AC AT AT AT AT AT AT AT AT AN
-----------------------------------------------------------------------------------------
Total sequence length......................... 244249
Total number of repeats detected.............. 35
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 7 7 0 2 1 5 7 0 0 0 0 0
15 to 19 0 1 1 1 0 1 1 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 7 8 1 3 1 6 8 1 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
7 AT + 8 TA = 15
1 AG + 3 GA + 0 CT + 0 TC = 4
1 GT + 8 TG + 6 CA + 1 AC = 16
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7294792|gb|AE003547.1|AE003547 Drosophila melanogaster genomic scaffold 142000013386050 section 34 of 54, complete sequence
Position Repeat Coverage Repeat
4667 TA * 12 22/24 TA TA TA TA TA TT TA TA TA TA TC TA
12429 TA * 16 29/32 TA TA CA TA TA TA TA TG TA TA TA TA TA TA TA TT
21692 TG * 10 18/20 TG TG TG TG TG TG TG TG CG CG
26059 TC * 11 20/22 TC TC TC TC TC TG TC TC TC TC TT
30773 GT * 12 22/24 GT GT GC GT GT GT GT GT GT GA GT GT
31199 CT * 10 18/20 CT CT CA CG CT CT CT CT CT CT
31512 AG * 13 24/26 AG TG AA AG AG AG AG AG AG AG AG AG AG
55200 CA * 15 27/30 CA CA CA CA CA CT CA CA CA CA CA CA CA TA TA
58380 CA * 12 22/24 CA CA CA CA CA AA CA CA CC CA CA CA
60311 CA * 15 28/30 CA CA CA CA CA CA CA CA CA CA CA CA CA TT CA
60861 AC * 10 18/20 AC GC AC GC AC AC AC AC AC AC
63946 TG * 10 18/20 TG TG TG TC TG CG TG TG TG TG
70439 AT * 13 24/26 AT AT AT AC GT AT AT AT AT AT AT AT AT
74381 TG * 15 28/30 TG TG TG CG AG TG TG TG TG TG TG TG TG TG TG
74564 TG * 13 24/26 TG TG TG TG TG TG TG TG TT TG TG TG GG
74644 GT * 12 22/24 GT AT GT GT GT GT GT GT GT GT GT GG
76135 TG * 10 18/20 TG TG TG TG TG TG TG TA TG TT
77082 CT * 17 32/34 CT CT TT CT CT CT CT CT CT CT CT CT CT CT CT CT CC
81249 TG * 10 18/20 TG TG TG TT AG TG TG TG TG TG
81366 GT * 11 20/22 GT GT GT GC GT GT GT GT GT GG GT
85117 TG * 10 18/20 TG TG TG TG TG TG TG TA TT TG
94508 CT * 17 32/34 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CA CT CA
111886 GT * 17 31/34 GT GT GT GT GT GT GT GT GT GT GC GT GT GT GA GT TT
121228 CA * 11 20/22 CA CC GA CA CA CA CA CA CA CA CA
127129 TG * 14 26/28 TG TG TG TG TT TG TG TG TG TG TG TG TG TT
133064 TA * 10 19/20 TA TA TA CA TA TA TA TA TA TA
140725 AC * 15 27/30 AC AC AC AA AC AC AC AC AC AC AC AA AC AC AT
142254 AT * 15 27/30 AT AT AT GT AT AT AT AT AT AT AT AT TT AT CT
145420 AG * 13 24/26 AG CC AG AG AG AG AG AG AG AG AG AG AG
148072 CT * 12 23/24 CT GT CT CT CT CT CT CT CT CT CT CT
148645 CT * 13 24/26 CT CA CT GT CT CT CT CT CT CT CT CT CT
148798 AG * 12 23/24 AG AG AG AG AG AG AG TG AG AG AG AG
151261 GT * 12 22/24 GT GT TT GT CT GT GT GT GT GT GT GT
151497 CA * 12 22/24 CA AA CA CA CA CA CA CT CA CA CA CA
152049 TG * 12 22/24 TG CG TG TG TG TG CG TG TG TG TG TG
153672 TG * 10 18/20 TG TG TG TG TG AG TG TG TA TG
158608 CA * 11 20/22 CA CA CA CA CT CA CA CA CA TA CA
161881 TG * 10 18/20 TG TA TG TG TG TG TG TG TG TC
163328 CA * 10 18/20 CA CA CA CA CA CA CA CA TA CC
163518 TG * 10 18/20 TG TG TG CC TG TG TG TG TG TG
164364 CA * 11 21/22 CA CA CA CA CA CA CA CA CA CA CT
164406 CA * 11 20/22 CA CG CA CA CA CA CA CA CG CA CA
165462 CT * 15 27/30 CT CT CA CT CT CT CG CT CT CT CT CT CT CT CC
165761 CA * 13 24/26 CA AA CA CA CA CA CA CA CA CA TA CA CA
166481 TG * 13 24/26 TG AG TG TG TA TG TG TG TG TG TG TG TG
166962 TG * 10 19/20 TG TG CG TG TG TG TG TG TG TG
167999 CA * 11 20/22 CA CA CA CA CA GA CA CA CA CA TA
172015 TG * 12 23/24 TG TA TG TG TG TG TG TG TG TG TG TG
172293 GT * 10 18/20 GT GT AT GT GT GT GT GT TT GT
176581 TA * 16 29/32 TA TA TA TG TA TA TT TA TA TA TA TA TA TA TA TG
177093 AT * 16 29/32 AT AT AT AC AT AT GT AT AT AT AT AT AT AT AT AN
180458 CA * 16 29/32 CA CA CC CA CA CA CA CA CA CA CA CA CG CA AA CA
185186 TG * 18 33/36 TG TG TG TG TG TG TG TG TG TG TG TG CT TG TT TG TG TG
185696 CA * 12 22/24 CA CA CA CA CA TA CC CA CA CA CA CA
186018 GT * 11 20/22 GT GC GT GT GT GT GT GT GT GA GT
187267 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CA TG
187365 TG * 11 20/22 TG TG TG CG TG TG CG TG TG TG TG
187488 TG * 10 18/20 TG CG TG TG TG TG TG TG TG CG
189322 CA * 16 29/32 CA CA CA CA CA CA CA CA CA CA CA CG CA CA CC CC
190806 AG * 11 20/22 AG AC AG AG AG AG AG AG AG AA AG
197791 AT * 13 25/26 AT AT AT AT AT GT AT AT AT AT AT AT AT
198606 GT * 12 22/24 GT TT GT GT GT GT TT GT GT GT GT GT
210149 AC * 11 20/22 AC AG AC AC AC TC AC AC AC AC AC
212159 TA * 10 18/20 TA TA TA TA TA TA TA TA TA NN
213900 GA * 10 18/20 GA GA GA GA GT GA GT GA GA GA
213988 AC * 12 22/24 AC AC AC AC AC AC AC AC AC CC AA AC
216231 TA * 13 24/26 TA TA TA TA TA AA TA TA TA CA TA TA TA
218009 TG * 10 18/20 TG TG TG TG TG TG TT TG TG TT
220683 CA * 10 18/20 CA CA CA CA CA AA CA CA GA CA
220742 GT * 10 18/20 GT GT GT GT GT GT GT GT GC GC
223265 AC * 10 18/20 AC AC AC AC GT AC AC AC AC AC
227892 AG * 13 25/26 AG AG AT AG AG AG AG AG AG AG AG AG AG
237815 GT * 10 18/20 GT GT GT GT GT GT GT GT GT AG
243266 AT * 10 18/20 AT AT AT AT AT AT GT AT GT AT
260664 CA * 10 19/20 CA CT CA CA CA CA CA CA CA CA
262138 CA * 11 20/22 CA CG CA AA CA CA CA CA CA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 281396
Total number of repeats detected.............. 76
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 4 5 1 4 14 17 9 1 3 0 0
15 to 19 2 2 0 0 1 4 2 1 0 3 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 6 5 1 5 18 19 10 1 6 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 6 TA = 11
5 AG + 1 GA + 6 CT + 1 TC = 13
10 GT + 19 TG + 18 CA + 5 AC = 52
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7294749|gb|AE003546.1|AE003546 Drosophila melanogaster genomic scaffold 142000013386050 section 33 of 54, complete sequence
Position Repeat Coverage Repeat
6784 CT * 10 19/20 CT CC CT CT CT CT CT CT CT CT
16643 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TA TT
18494 CA * 11 21/22 CA CA CA CA CA CA CA CA CA CA CG
29057 AT * 11 20/22 AT AT AT AC AT AT AT AT CT AT AT
46127 CA * 10 18/20 CA CA CA CA CA CA CA CA CG CG
49736 GT * 11 20/22 GT GT GT GT GT GT GG TT GT GT GT
51130 GT * 13 24/26 GT GT GT GT GT GT GT GT GC GT GT GT AT
55323 AT * 18 33/36 AT AT AT AT AT AT AT GT GT AT AT AT AT AT AT GT AT AT
77381 CA * 11 20/22 CA CC CA CT CA CA CA CA CA CA CA
117038 AT * 13 25/26 AT AT AT AT AT AT AT AC AT AT AT AT AT
122956 CT * 13 25/26 CT CT CT CT CT CT CT CT CT CT CT CT TT
132947 AT * 17 32/34 AT AT AT AT AT AT AT AT AT AT CT AT AT AT AT GT AT
134307 AC * 11 21/22 AC AC AA AC AC AC AC AC AC AC AC
134539 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG CA
148504 CA * 14 26/28 CA CA CA CA CA CA CA CA CA CA CA CA CA TT
158971 CA * 10 18/20 CA CA AT CA CA CA CA CA CA CA
159020 TG * 10 18/20 TG CG TG TG CG TG TG TG TG TG
160748 CT * 10 18/20 CT CT CT TT CT CT CT CT CT CC
161993 CT * 18 33/36 CT CC CT CT CT CT AT CT CT CT CT CT CT CT CT CT CT AT
164579 TA * 18 33/36 TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA TA CC
169694 TC * 11 20/22 TC GT TC TC TC TC TC TC TC TC TC
187674 TA * 13 24/26 TA TA TA TA GA TA TA TA TA TA TA GA TA
199559 TA * 17 31/34 TA TA TA TA TA TA TA TA TA TA GA TA TA GA TA TA TG
227604 TG * 25 45/50 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TC AA CA
229050 CA * 15 27/30 CA TA CA CA CA CA CA CA CA CA CA CA CA GA TA
249270 TG * 16 29/32 TG TG TG TG TA TG TG TG TT TG TG TG TG TG TG AG
249507 AT * 13 24/26 AT AT AT AC AT AC AT AT AT AT AT AT AT
254645 AT * 11 21/22 AT AT AT AT AT AT AT AT GT AT AT
271606 CA * 15 28/30 CA CA CA CA CA CA CA CA CA CA CA CA CA TC CA
280031 TA * 11 21/22 TA TA TG TA TA TA TA TA TA TA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 281602
Total number of repeats detected.............. 30
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 2 0 0 1 5 3 2 1 3 0 0
15 to 19 2 2 0 0 0 2 1 0 0 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 1 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 6 4 0 0 1 7 5 2 1 4 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
6 AT + 4 TA = 10
0 AG + 0 GA + 4 CT + 1 TC = 5
2 GT + 5 TG + 7 CA + 1 AC = 15
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7294729|gb|AE003545.1|AE003545 Drosophila melanogaster genomic scaffold 142000013386050 section 32 of 54, complete sequence
Position Repeat Coverage Repeat
9353 TA * 10 18/20 TA TA TG TA TG TA TA TA TA TA
12239 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA CG CG
33056 TA * 11 20/22 TA AA TA TA TA TA TA TA TA CA TA
33119 AT * 11 20/22 AT AT GT AT AT AT AT AT AT AT AC
47754 CA * 11 20/22 CA CA CT CG CA CA CA CA CA CA CA
48400 AT * 12 22/24 AT AT AC AT AT AC AT AT AT AT AT AT
52623 TG * 10 19/20 TG TG TG CG TG TG TG TG TG TG
64493 CA * 17 31/34 CA CA CA CA CA AA CA CA CA CA CA CA CA CA CA CT CC
65584 TA * 10 18/20 TA TA TA TA TA GA TA TA TA CA
67306 GT * 13 24/26 GT GT GT GT GT GT GT GC GT GT GT GT GA
78306 AT * 13 24/26 AT AT AT AT AT AT AT AT AT AC AT AT AA
91387 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CT TA
91541 AT * 13 24/26 AT AT AT AT AT AT AT AT GT AT AC AT AT
94619 AC * 12 23/24 AC AC AC AC AC AC AC AC AC AC AC AG
102329 AT * 10 18/20 AT AT AT TT AT AT AC AT AT AT
103237 TA * 10 18/20 TA TA TA TG TA TG TA TA TA TA
106236 AT * 10 18/20 AT AA AT AT AT AT AT AT AT AA
112016 CA * 22 41/44 CA CC CA CA CA CA CA CA CA CA CA CA CA CA CA CC CA CA CA CA CA AA
113316 GT * 12 22/24 GT GC GT GT GT GT GT GT GT GT GT GG
127174 CA * 11 20/22 CA CA CA CA CA CA CA CA CA AG CA
131627 TA * 10 18/20 TA CA TA TA TA TG TA TA TA TA
140529 CA * 10 19/20 CA CA CA CA CA CA CA CA CA TA
140748 AT * 10 18/20 AT AT AT AT AA AT AT AC AT AT
141043 TG * 10 18/20 TG TG TG GG CG TG TG TG TG TG
163357 TA * 12 23/24 TA TA AA TA TA TA TA TA TA TA TA TA
166231 TA * 11 20/22 TA TA TA TA TA GG TA TA TA TA TA
172089 AT * 10 18/20 AT AT AT AT AC AT AC AT AT AT
191058 CA * 10 18/20 CA CA GA TA CA CA CA CA CA CA
195649 TC * 10 18/20 TC TT TC TC TC TC TC TC TC TT
196419 TG * 11 20/22 TG CG TG TT TG TG TG TG TG TG TG
196856 TG * 23 42/46 TG TG TA TG TG TG TG TG TG TG TG TG TG TT TG TG TG TA TG TA TG TG TG
196910 GT * 12 22/24 GT GT TT GT GT GT GT GT GT GT GT GG
204114 CA * 10 18/20 CA AA AA CA CA CA CA CA CA CA
205395 AG * 12 22/24 AG AG AG AT AG AT AG AG AG AG AG AG
205420 GA * 11 20/22 GA GA GA GA GA GA GC GG GA GA GA
208628 TC * 10 18/20 TC CC AC TC TC TC TC TC TC TC
211259 AT * 13 24/26 AT AT GT AT AT AT GT AT AT AT AT AT AT
222122 TA * 11 20/22 TA TA CA TA TA TA TA TA TA TA GA
235510 AC * 10 18/20 AC AC AC GC AC AA AC AC AC AC
235828 GA * 20 36/40 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GG GC AG
236753 AG * 11 21/22 AG AG AG AG AG AC AG AG AG AG AG
243843 TA * 12 22/24 TA TA TA AA TA TA TA TA TA TA CA TA
254422 GT * 10 18/20 GT GT GT GT GT GT GT CT GT GA
254467 CT * 10 18/20 CT CG CT CT CT CT CT CT TT CT
264139 TG * 10 18/20 TG TG TG GG TG TG TA TG TG TG
265676 AT * 11 20/22 AT AT AT AA AT AT AA AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 281893
Total number of repeats detected.............. 46
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 10 9 2 1 2 7 4 4 2 1 0 0
15 to 19 0 0 0 0 0 1 0 0 0 0 0 0
20 to 24 0 0 0 1 0 1 1 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 10 9 2 2 2 9 5 4 2 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
10 AT + 9 TA = 19
2 AG + 2 GA + 1 CT + 2 TC = 7
4 GT + 5 TG + 9 CA + 2 AC = 20
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7294680|gb|AE003544.1|AE003544 Drosophila melanogaster genomic scaffold 142000013386050 section 31 of 54, complete sequence
Position Repeat Coverage Repeat
17074 AT * 10 18/20 AT AT AT AT AT AT AT AT GC AT
22820 GA * 11 20/22 GA AT GA GA GA GA GA GA GA GA GA
22875 TG * 10 18/20 TG TG TG TG TG TG TG TG TT TC
50564 AT * 11 20/22 AT AT AC AT AT AT AT AC AT AT AT
63417 TG * 11 20/22 TG TG TG TG CG TG TG TG TG GG TG
64329 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TG TG TG TG CT TC
70693 AT * 11 20/22 AT AT AT AT AT AT AT TT AT GT AT
74401 CA * 10 19/20 CA CA CA CA CA CA CA CA CA CG
128925 TA * 10 19/20 TA TA TA TA TA TA AA TA TA TA
134170 GT * 11 20/22 GT GT GT GT GT GT GT GT GC GT GA
137205 CA * 13 24/26 CA CA TA CA CA CA CA CA CA CA CA CA TA
145520 GA * 10 18/20 GA GA GA AA CA GA GA GA GA GA
176223 GT * 14 26/28 GT GT GT GT GT GT GT GT GT GT GT GA GA GT
176282 CT * 10 18/20 CT CT CT CT CA CT CT CG CT CT
187529 GT * 12 22/24 GT GA GT AT GT GT GT GT GT GT GT GT
212405 AT * 10 18/20 AT AT AT AT AT AT AT AC AT TT
213480 AT * 11 20/22 AT AT AT AC AT AT AT AT AT AT AG
219794 AC * 13 24/26 AC AC AC AC AC AC AC AC GC AC AC AC AA
226756 AT * 10 18/20 AT AT AT AT AT AA AT AC AT AT
236596 TG * 10 18/20 TG CG TG TG TG TG TG TG TG TA
237254 AT * 12 22/24 AT AT AT AT CT AT AT AT GT AT AT AT
240048 CT * 10 18/20 CT CT CT CT GT CT TT CT CT CT
265091 TA * 10 18/20 TA TT TA TA TA TA TA TA TA TT
266713 GT * 18 33/36 GT GT GT CT GT GT GT GT GT GT GT GT GT AT GA GT GT GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 281869
Total number of repeats detected.............. 24
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 7 2 0 2 1 2 3 3 0 2 0 0
15 to 19 0 0 0 0 0 0 1 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 7 2 0 2 1 2 4 4 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
7 AT + 2 TA = 9
0 AG + 2 GA + 2 CT + 0 TC = 4
4 GT + 4 TG + 2 CA + 1 AC = 11
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7294631|gb|AE003543.1|AE003543 Drosophila melanogaster genomic scaffold 142000013386050 section 30 of 54, complete sequence
Position Repeat Coverage Repeat
18834 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT GC GG
107322 TG * 10 18/20 TG GG TG TA TG TG TG TG TG TG
117036 AC * 11 20/22 AC AC AG GC AC AC AC AC AC AC AC
119608 GT * 20 36/40 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GA GT GT GG GC GC
144067 TG * 10 18/20 TG TA TG TG CG TG TG TG TG TG
144263 TG * 10 18/20 TG TG TG CG TG AG TG TG TG TG
161059 CA * 10 18/20 CA CA CA CA CA CA CA CA CA TT
175975 TA * 11 20/22 TA TA TA TA TA TA TA TA TA TA CC
187868 CA * 10 18/20 CA CA CA TA CA CA CA CA CA CG
209821 TA * 10 18/20 TA TA TA TA TA TA TA TA TG CA
233924 AT * 10 18/20 AT AT AT AT AC AT AT AT GT AT
254602 AC * 13 24/26 AC AG GC AC AC AC AC AC AC AC AC AC AC
256617 TG * 13 24/26 TG TG TG TG TG CG GG TG TG TG TG TG TG
265212 TA * 16 29/32 TA TA TA TA TA TA TG TA TA TA TA AA TA TA TA TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 284386
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 2 0 0 2 2 4 1 0 0 0 0
15 to 19 0 1 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 1 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 3 0 0 2 2 4 2 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 3 TA = 4
0 AG + 0 GA + 0 CT + 0 TC = 0
2 GT + 4 TG + 2 CA + 2 AC = 10
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7294592|gb|AE003542.1|AE003542 Drosophila melanogaster genomic scaffold 142000013386050 section 29 of 54, complete sequence
Position Repeat Coverage Repeat
2904 CA * 12 22/24 CA CA CA CA CA CA CA CA CG CA CC CA
2967 CA * 10 19/20 CA AA CA CA CA CA CA CA CA CA
9547 AC * 16 29/32 AC AC AC AC AC AC AC AC AC AC AC AC AC AG AG GC
9950 TG * 10 18/20 TG TG TG TG TG TG TG TG TG CT
12897 AC * 11 20/22 AC AC AC AC AC CC AC AC AC AC AT
14377 CA * 10 18/20 CA CA AA CA CA CA CA CA CA CG
14883 CA * 10 18/20 CA CA CG CA CA CA CA CA CA AA
57882 CA * 13 24/26 CA CA CA CC CA CA CA CA CA CA CA GA CA
60093 TA * 13 24/26 TA TA TA TA TA TA TA TA TA TA TC TA TC
64583 AC * 20 37/40 AC CC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AA AC AC TC
76559 AC * 10 18/20 AC AC AC GC AC AC AC AC TC AC
78351 CA * 11 21/22 CA CA CA CA CA CA CA CA CA CA CT
78980 AG * 11 20/22 AG AA AG AG AG AG AG AG GG AG AG
82245 AT * 10 18/20 AT AT AT AT AA AT AT AT AT TT
84072 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA GA GA
86253 CA * 14 26/28 CA TA CA CA CA CA CA CA CA CA CA CA CA CT
88837 AC * 11 20/22 AC AC AC AC AC AC AC AC AT AC AG
94919 AC * 11 20/22 AC AA AT AC AC AC AC AC AC AC AC
96000 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TG TG TG TT TG GA
98157 TA * 11 20/22 TA TA TA TT TA TA TA TA TA TA TC
128164 AT * 17 31/34 AT AT AT AT AT AT TT AT AT AT AT AT AT AT AT GT GT
132370 AT * 13 24/26 AT AT AT AC AT AT GT AT AT AT AT AT AT
145859 TA * 10 18/20 TA TA TA CA TA TA TA TA TA CA
146791 TG * 10 18/20 TG TG TG TT TG TG TG TG TG TT
147815 TG * 10 18/20 TG TG TG TG TT TG TG TA TG TG
149044 AC * 12 22/24 AC AC AC AC AC AC AC AC GC AG AC AC
152637 AT * 10 18/20 AT AT AA TT AT AT AT AT AT AT
154028 TA * 10 18/20 TA TA CA CA TA TA TA TA TA TA
186559 TG * 11 20/22 TG TA TG CG TG TG TG TG TG TG TG
186786 AC * 12 22/24 AC AC AC AC AC AC AC AT AC AC AC AT
193162 AT * 11 20/22 AT AT AT AT AT AT AT AT TT AG AT
209240 AG * 11 20/22 AG AA AG AG AG AG AG AG AG AG TG
220206 GA * 10 18/20 GA GA AA GA GA GA GA GA GA AA
220879 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CT CA AA CA
251894 TG * 10 18/20 TG CG TG TG TG TG TG TT TG TG
277373 AT * 13 24/26 AT AT AA AT AT AT AT AT AT AT AT AT TT
-----------------------------------------------------------------------------------------
Total sequence length......................... 289887
Total number of repeats detected.............. 36
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 4 2 1 6 9 5 0 0 0 0 0
15 to 19 1 0 0 0 1 0 1 0 0 0 0 0
20 to 24 0 0 0 0 1 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 6 4 2 1 8 9 6 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
6 AT + 4 TA = 10
2 AG + 1 GA + 0 CT + 0 TC = 3
0 GT + 6 TG + 9 CA + 8 AC = 23
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7294556|gb|AE003541.1|AE003541 Drosophila melanogaster genomic scaffold 142000013386050 section 28 of 54, complete sequence
Position Repeat Coverage Repeat
10521 TG * 11 20/22 TG CG GG TG TG TG TG TG TG TG TG
71905 GT * 10 18/20 GT GA GT GT GA GT GT GT GT GT
93269 AC * 11 20/22 AC AT AG AC AC AC AC AC AC AC AC
115151 TA * 11 20/22 TA TA TA TA TA CA TA TA TA CA TA
142167 AT * 11 20/22 AT AT AT AC AT AT AT AT GT AT AT
143774 CA * 11 20/22 CA CA CA CA CA CA CA CA CT CA GA
162006 TG * 12 22/24 TG TG AG CG TG TG TG TG TG TG TG TG
210911 CA * 13 24/26 CA CA CA TA TA CA CA CA CA CA CA CA CA
219154 CT * 10 18/20 CT TT CT CT CT CT CT CT CT GT
243434 CA * 10 18/20 CA CA CA CA CA AA CG CA CA CA
245329 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GT GT GG GA
257794 CA * 12 23/24 CA CA CA CA CA CA CA CA CA CG CA CA
264067 TG * 10 18/20 TG TG TG TG GG TG TG TG TG TA
264159 CA * 11 20/22 CA CT CA CT CA CA CA CA CA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 265547
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 1 0 0 1 5 3 2 0 1 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 1 0 0 1 5 3 2 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 1 TA = 2
0 AG + 0 GA + 1 CT + 0 TC = 1
2 GT + 3 TG + 5 CA + 1 AC = 11
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7294528|gb|AE003540.1|AE003540 Drosophila melanogaster genomic scaffold 142000013386050 section 27 of 54, complete sequence
Position Repeat Coverage Repeat
309 AC * 10 18/20 AC AC AC AC AC AC AG AC AC AG
15879 AT * 10 18/20 AT AT AT AT TT AT AT AA AT AT
28908 TA * 10 18/20 TA TA TA TA TA TA TA GA TT TA
48535 AT * 10 18/20 AT AT AT AC CT AT AT AT AT AT
69422 GA * 10 18/20 GA GA GA GA GA GA GG GA GA GT
69629 TA * 10 18/20 TA TA TA TA CA TA TA TG TA TA
141267 AT * 11 20/22 AT AT AT AT AC AT AT AT AT AT AC
146352 TA * 12 22/24 TA TT CA TA TA TA TA TA TA TA TA TA
150267 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AC GT
150317 AT * 10 18/20 AT AT AT GT AT AT AT AT AT AC
155521 TA * 10 18/20 TA TA TA TA TC TA AA TA TA TA
156077 TA * 11 20/22 TA TT GA TA TA TA TA TA TA TA TA
156828 AT * 10 18/20 AT AT AC AT AT AT AT AT AT AC
161086 AC * 11 20/22 AC AC AC AC AC AC AC TC AC AC CC
172724 CA * 12 22/24 CA TT CA CA CA CA CA CA CA CA CA CA
172766 AC * 12 22/24 AC AC AC TC AC AC AC AC AC AC AC AT
184065 GT * 10 18/20 GT GG GT GG GT GT GT GT GT GT
190075 AT * 11 20/22 AT AA GT AT AT AT AT AT AT AT AT
216207 GT * 12 22/24 GT GT GT GT GC GT GT GT GT GT GT GC
229798 TA * 10 18/20 TA TA TA TG TA TA TA TA CA TA
235408 GT * 13 24/26 GT GA GT GT GT GT GT GT GT GT GT GT GG
237578 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AC AT GC
245734 GT * 10 18/20 GT GT GT GT GT GT GT TT GT TT
246061 AG * 13 25/26 AG AG AG AG AG CG AG AG AG AG AG AG AG
252381 GT * 11 20/22 GT GT GT GT GT GT AT GT GT GT GG
254353 AG * 10 18/20 AG AG TG AG AG AG AG AG GG AG
261884 AT * 11 20/22 AT AT AT AC AT AT GT AT AT AT AT
262232 AT * 22 40/44 AT AT AT AT AT AT AT AT CT AT AT AT AT AT GT AT GT AT AT AT AT AG
266930 CA * 12 22/24 CA CA GA CA CA CA CA CA CA CA GA CA
275482 TA * 10 18/20 TA AA TA TA TA TA AA TA TA TA
281424 TA * 10 18/20 TA TA TA TA CA TA CA TA TA TA
285050 AT * 12 22/24 AT AT AC AT AT AT AT AT AT AT AT AC
286776 CA * 11 21/22 CA CA CA CA CT CA CA CA CA CA CA
292884 CT * 17 32/34 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CG CT CG
296810 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CT CT
-----------------------------------------------------------------------------------------
Total sequence length......................... 297385
Total number of repeats detected.............. 35
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 8 8 2 1 5 4 0 5 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 1 0 0
20 to 24 1 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 9 8 2 1 5 4 0 5 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
9 AT + 8 TA = 17
2 AG + 1 GA + 1 CT + 0 TC = 4
5 GT + 0 TG + 4 CA + 5 AC = 14
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7294496|gb|AE003539.1|AE003539 Drosophila melanogaster genomic scaffold 142000013386050 section 26 of 54, complete sequence
Position Repeat Coverage Repeat
38776 GA * 11 20/22 GA GA GG AA GA GA GA GA GA GA GA
63935 AC * 11 20/22 AC AC AC AC AC AC AC AC AA AC GC
78517 CA * 10 18/20 CA CA CA CA CA CA TA CA TA CA
87385 TA * 10 18/20 TA TA TA TA TG TA TA TA AA TA
90533 CA * 10 18/20 CA CA CA AA CA CA CA CA CA CC
99281 TA * 10 18/20 TA TA TA TA TG TA GA TA TA TA
99448 TG * 10 18/20 TG CG TG TG TG TG TG TG TG GG
143190 TG * 11 20/22 TG AG TG CG TG TG TG TG TG TG TG
144179 TG * 10 19/20 TG TG TG TG TG TG TG TG TT TG
147682 TA * 11 20/22 TA AA TA TA TA TA TA TA TA TA TG
163894 CA * 11 20/22 CA AG CA CA CA CA CA CA CA CA CA
168991 CA * 10 18/20 CA CA CA CA CA CA CA CA TA CT
190583 GT * 10 18/20 GT GT GT GT GT GT GT GT GT AA
196455 GT * 20 36/40 GT GT GT GT GT GT GT GT GT GT GT GT GT GC TT GT GT CT GT GA
198287 CT * 13 25/26 CT CT CT CT CT CT CT CT CT CT TT CT CT
203305 TG * 11 20/22 TG CA TG TG TG TG TG TG TG TG TG
217462 TG * 10 18/20 TG TG TG TG TA TG TA TG TG TG
221159 TA * 15 27/30 TA TA GA TA TA TA TA TA TA TA TA CA TA TA TG
238970 CA * 10 18/20 CA CA CA CA CA CA TG CA CA CA
250393 GT * 22 41/44 GT GT AT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GC GT GG
250923 AT * 10 18/20 AT AT AT GT AT AT AT AT TT AT
253006 TC * 14 26/28 TC TC TC TC TC TC TC TC GC TC TC TC TT TC
270916 GT * 11 20/22 GT GA GT GT GT GT GT GT GT GT AT
271445 GT * 14 26/28 GT AT GT GT GT GT GT GT GT GT GT GG GT GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 271729
Total number of repeats detected.............. 24
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 3 0 1 1 5 5 3 1 1 0 0
15 to 19 0 1 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 2 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 4 0 1 1 5 5 5 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 4 TA = 5
0 AG + 1 GA + 1 CT + 1 TC = 3
5 GT + 5 TG + 5 CA + 1 AC = 16
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7294470|gb|AE003538.1|AE003538 Drosophila melanogaster genomic scaffold 142000013386050 section 25 of 54, complete sequence
Position Repeat Coverage Repeat
5674 AT * 11 20/22 AT AT AT AT AT AT AT AT GT AT AA
13904 TG * 10 18/20 TG CG TG TG TG TG TG TG TG TC
19602 AT * 10 18/20 AT AT AT AT AC AT AC AT AT AT
35275 AT * 10 18/20 AT AT AT AT AT AA AT AA AT AT
74773 CA * 12 22/24 CA CA CG CA CA CA CA CA CA CA TA CA
93593 TA * 10 18/20 TA AA TA TA TA TT TA TA TA TA
102996 GT * 14 26/28 GT GT GT GT GT GT GT GT GT GT GT GT GG GC
111030 GT * 10 18/20 GT GT GT GT GT GT GT GT GT AC
127407 TA * 10 18/20 TA TA TA AG TA TA TA TA TA TA
135131 AG * 11 20/22 AG AA AG AG AG TG AG AG AG AG AG
149718 TA * 10 18/20 TA TT TA TA TA TT TA TA TA TA
211293 TG * 11 21/22 TG TG TG TG TG TG TG TG TG TT TG
212481 AG * 23 42/46 AG AG AG AG AG GG AG AG AG AG GG AG AG AG AG AG AT AG AG AG AG AC AG
218072 AT * 13 24/26 AT AT AT AT AT AT AT AT AT GT AC AT AT
224969 AC * 10 18/20 AC AC AC AC AC AC AC AC CT AC
225804 CA * 10 18/20 CA TA CA CA CA CA CA CA CA CT
240329 TA * 18 33/36 TA TA TA TA TA TA TA TA GA TA TA TA GA TA TA TA CA TA
253121 CA * 17 31/34 CA CA CA CA CA CA CA CA CA CA CA TG CA CA CG CA CA
263072 AT * 11 20/22 AT AT AT GT AT CT AT AT AT AT AT
291521 CA * 12 22/24 CA TA CT CA CA CA CA CA CA CA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 303715
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 3 1 0 1 3 2 2 0 0 0 0
15 to 19 0 1 0 0 0 1 0 0 0 0 0 0
20 to 24 0 0 1 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 4 2 0 1 4 2 2 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 4 TA = 9
2 AG + 0 GA + 0 CT + 0 TC = 2
2 GT + 2 TG + 4 CA + 1 AC = 9
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7294453|gb|AE003537.1|AE003537 Drosophila melanogaster genomic scaffold 142000013386050 section 24 of 54, complete sequence
Position Repeat Coverage Repeat
13762 CA * 15 27/30 CA CC CA CA CA CA CA CA CA CA CA CA CC CA CG
19687 TG * 11 20/22 TG TG TG TT TG CG TG TG TG TG TG
20576 TG * 11 20/22 TG TG TG TG TG TG TA TA TG TG TG
28066 AC * 11 21/22 AC AC AC AC AC AC AC AC AC AC AT
48986 TG * 14 26/28 TG TG TG TG TG TG TG TG TG TG TG TG CG AG
54286 GT * 15 27/30 GT GT GT GT GT AT GT GT GT GT GT TT GT GT GC
55456 GT * 13 25/26 GT GT GT GT GT GT GT GT GT GT GT GT GG
75723 AC * 10 18/20 AC AT AC AC AC AC GC AC AC AC
80977 TG * 11 21/22 TG CG TG TG TG TG TG TG TG TG TG
85599 TG * 10 18/20 TG TG AG TG TG TG AG TG TG TG
92162 AG * 11 20/22 AG AG AG AG AA AG AG AG AG AG AA
94976 CA * 15 28/30 CA CA TA CA CA CA CA CA CA CA CA CA CA AA CA
95042 CA * 17 31/34 CA CA CA CA CA CA CA CA CA CA CA CA CT TA CA CA CC
99718 TA * 11 20/22 TA TA TA TA AA TA TA TA TG TA TA
101567 TC * 38 69/76 TC TC CC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC GC TC CC CC TC TA TT TT
104661 CA * 13 24/26 CA CA TA CA CA CA CA CA CA CA CA CT CA
105515 CA * 12 22/24 CA CA CA CA CA CA CA CA CA GA GA CA
107841 GT * 16 29/32 GT GT GT GT GT GT GT GT GT GT TT GT GT GT GC GC
112155 AC * 10 19/20 AC AC AC AC AC AC AC AC AC AA
112923 AC * 10 18/20 AC CC AC AC TC AC AC AC AC AC
114777 CT * 10 18/20 CT TT CT TT CT CT CT CT CT CT
116206 TA * 12 22/24 TA GA TA AA TA TA TA TA TA TA TA TA
116335 GT * 10 18/20 GT GT GT GT GT GT GT GT GG TT
116993 GA * 15 28/30 GA GA GA GA GA GA GA GA GA GA GA GA GA GG GG
120928 GT * 13 24/26 GT GT GT GT GT GT GT GT GG GT GT AT GT
129734 CA * 12 23/24 CA CA CA CT CA CA CA CA CA CA CA CA
132350 CA * 11 20/22 CA CA CA CA CA AA CA CA CA TA CA
135338 CA * 21 38/42 CA TA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CG CA CA TA TA
147547 CA * 15 28/30 CA TA CA CA CA CA CA CA CA CA CA CA CA CA TA
156290 TG * 10 18/20 TG TG TG CG TC TG TG TG TG TG
160153 TG * 16 29/32 TG TG TG AG TG TG TG TG TG TG TG TG TG TG GA TG
160694 AC * 10 19/20 AC AC AC AC AC AC AC AC AC AG
162704 CA * 13 24/26 CA AA CA CA CA CA CA CG CA CA CA CA CA
175546 CA * 15 28/30 CA CA CA CA CA CA CA CA CA CA CA CA CA CC GA
177231 AT * 11 20/22 AT AT AT AT AT AT AT AT AT GT AG
180925 TG * 10 18/20 TG TG TG TG TT TT TG TG TG TG
181458 CA * 11 20/22 CA CA AA CG CA CA CA CA CA CA CA
181709 TG * 11 20/22 TG TG TG CG TG TG TG TG TT TG TG
186550 CT * 10 18/20 CT CT CT CT TT CT CA CT CT CT
189774 AT * 10 18/20 AT AT AC AT AT AT AT AT CT AT
190194 AC * 10 18/20 AC AC AC AC AC AC AC AT AT AC
192681 AT * 10 18/20 AT AT AT TT AT AT AT AT TT AT
193938 AT * 11 20/22 AT GC AT AT AT AT AT AT AT AT AT
205324 CA * 10 18/20 CA CA CA AA CA CT CA CA CA CA
227025 AT * 11 20/22 AT AT TC AT AT AT AT AT AT AT AT
229188 TG * 12 22/24 TG TA TG TG TG TG TG TG TG TG TG TA
235521 TG * 19 35/38 TG TG TG TG TG TG TG TG TG TG TG TG TG TT TG TG AG TG AG
246306 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GT GT GT TA
251914 CT * 10 18/20 CT CT CT CT CC CT CT CT CT CG
-----------------------------------------------------------------------------------------
Total sequence length......................... 280570
Total number of repeats detected.............. 49
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 2 1 0 6 7 9 4 0 3 0 0
15 to 19 0 0 0 1 0 5 2 2 0 0 0 0
20 to 24 0 0 0 0 0 1 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 1 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 2 1 1 6 13 11 6 1 3 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 2 TA = 7
1 AG + 1 GA + 3 CT + 1 TC = 6
6 GT + 11 TG + 13 CA + 6 AC = 36
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7294412|gb|AE003536.1|AE003536 Drosophila melanogaster genomic scaffold 142000013386050 section 23 of 54, complete sequence
Position Repeat Coverage Repeat
36766 CA * 10 18/20 CA CT CA CA CA CA CA CA CA CC
51852 CT * 11 21/22 CT CT CT CT CT CT CT CT CC CT CT
59102 GT * 11 20/22 GT TT GT GT CT GT GT GT GT GT GT
61564 GT * 10 18/20 GT GT GT GT GT GT TT GT GT GA
87733 TA * 10 18/20 TA TA TA TA TG TA TA TA TA GA
98178 CA * 10 18/20 CA AA CA CA CA CA CA CA AA CA
98339 CT * 10 19/20 CT CT CT CT CT CT CT CG CT CT
98828 AC * 12 22/24 AC AC AC AC AC AC AC TC AC AC AC AG
109205 AC * 13 25/26 AC AC AC AC AT AC AC AC AC AC AC AC AC
109670 AC * 12 22/24 AC AC AC AC AC GC AT AC AC AC AC AC
140567 TC * 16 30/32 TC CC TC TC TC TC TC TC TC TC TC TC TC TC TT TC
142544 GT * 10 18/20 GT GT GT GT GT GT GT GT GT AG
144003 AT * 11 20/22 AT AT AT AT AT AT GT AT AT AT GT
147474 GT * 13 24/26 GT GT GT GT GT GT GT GC GT GT GT GT GA
149282 AC * 11 20/22 AC AC AC AC AC AC AC AC GC AC AG
150684 TA * 11 20/22 TA TT TG TA TA TA TA TA TA TA TA
164763 AG * 17 31/34 AG AG AG AG AG AG AG AG AG TG AG AG CG AG AG TG AG
183777 AC * 11 20/22 AC AC AC AC AC AC AC AC TA AC AC
185593 AG * 13 25/26 AG AG AG AG AG AG AC AG AG AG AG AG AG
188203 AG * 10 18/20 AG AC AG AC AG AG AG AG AG AG
188447 AC * 10 19/20 AC AC AC AC AC TC AC AC AC AC
192360 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CT CC
196532 GT * 11 20/22 GT GT GC GT GT GT GT GT GT GG GT
196739 AC * 11 20/22 AC AC GC AC AC AC AC AC AA AC AC
200204 AC * 10 18/20 AC AC AA AC AC AC AC AC AC AG
200228 AC * 10 18/20 AC AC AC AT TC AC AC AC AC AC
201624 AT * 10 18/20 AT GC AT AT AT AT AT AT AT AT
201695 TA * 13 25/26 TA TA TA TA TA TA TA TA TG TA TA TA TA
202687 CT * 11 21/22 CT CT CT CT CT CT CT TT CT CT CT
205804 TA * 15 28/30 TA TA TA TA GA TA TA TA TA TA TA GA TA TA TA
212703 AC * 10 18/20 AC AC TC AC AC GC AC AC AC AC
214148 CT * 11 20/22 CT CT GT CT CT CT CT CT CT CT AT
219469 CA * 11 20/22 CA CA CA CA CA CA TA CA CA CG CA
225549 AT * 12 22/24 AT AC AT AT AT AT GT AT AT AT AT AT
255880 TG * 11 21/22 TG GG TG TG TG TG TG TG TG TG TG
260852 GT * 15 28/30 GT GT GT GT GT GT GT GT TT GT GT GT GT GT GC
263794 CA * 14 26/28 CA AA CA CT CA CA CA CA CA CA CA CA CA CA
265900 AG * 15 27/30 AG TG AG TG AG AG AG AG AG AG AG AG AG AG CG
270507 GT * 12 22/24 GT AT AT GT GT GT GT GT GT GT GT GT
271889 CA * 10 18/20 CA CA CA CA CA CA CA TA TA CA
282864 CA * 11 20/22 CA GC CA CA CA CA CA CA CA CA CA
289001 TG * 12 23/24 TG TG TG TG TG TG TG TG TG TG TG TA
292841 AT * 10 18/20 AT AT AT AT AT AC AT AT AT TT
306924 CA * 10 18/20 CA CA CA CA CA CA CA CA CG CG
309418 AT * 10 18/20 AT AT AT AT CT AT AC AT AT AT
318301 AC * 10 18/20 AC AC AC AC AC GC AC GC AC AC
335240 TG * 23 42/46 TG TG TG TG TG TG TG TG TG GG GG TG TG TG TG TG TG TG TG AG TG TC TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 341639
Total number of repeats detected.............. 47
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 3 2 0 11 8 2 6 0 4 0 0
15 to 19 0 1 2 0 0 0 0 1 1 0 0 0
20 to 24 0 0 0 0 0 0 1 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 4 4 0 11 8 3 7 1 4 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 4 TA = 9
4 AG + 0 GA + 4 CT + 1 TC = 9
7 GT + 3 TG + 8 CA + 11 AC = 29
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7294397|gb|AE003535.1|AE003535 Drosophila melanogaster genomic scaffold 142000013386050 section 22 of 54, complete sequence
Position Repeat Coverage Repeat
41891 TA * 17 32/34 TA TA TA TA TA TA TA TA TA CA TA TA TA TA TA TA TT
44478 AG * 10 18/20 AG AG AG CG AG AG AG GG AG AG
84111 AC * 10 18/20 AC AC AC AC AC AC AC AC AT AT
106588 AT * 12 22/24 AT AC AT AT GT AT AT AT AT AT AT AT
111335 TA * 11 20/22 TA CA TA TA TA TA TA TA TA CA TA
111632 AT * 11 20/22 AT AT TT AT AT AT AT AT AT AT TT
163350 CA * 10 19/20 CA CA CA CA CA CA CA CA CA CT
191003 CT * 10 18/20 CT CT CT TT CT CT CT CT CG CT
211318 TA * 10 18/20 TA TA TA TA TT TT TA TA TA TA
258942 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CA TT
260597 CT * 14 26/28 CT CT CT CT CT CT CT CT CT CT CT CT TA CT
274306 AT * 12 22/24 AT TC AT AT AT AT AT AT AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 278748
Total number of repeats detected.............. 12
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 2 1 0 1 2 0 0 0 2 0 0
15 to 19 0 1 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 3 1 0 1 2 0 0 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 3 TA = 6
1 AG + 0 GA + 2 CT + 0 TC = 3
0 GT + 0 TG + 2 CA + 1 AC = 3
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7294375|gb|AE003534.1|AE003534 Drosophila melanogaster genomic scaffold 142000013386050 section 21 of 54, complete sequence
Position Repeat Coverage Repeat
7472 TC * 11 20/22 TC TC TC TC TC GC TC TT TC TC TC
14511 AG * 12 22/24 AG AG AG AC AG AG AG AG AG GG AG AG
54926 TA * 10 18/20 TA TG TA TA TA TA CA TA TA TA
68506 CT * 13 24/26 CT CC AT CT CT CT CT CT CT CT CT CT CT
70209 TG * 10 18/20 TG TG TG TG TG TG TG TG TT AG
97803 GA * 13 25/26 GA GA GA GA GA GA GA GT GA GA GA GA GA
158053 AG * 10 18/20 AG AG AG AG GG AG AT AG AG AG
240516 AT * 14 26/28 AT AT AT AT AT AT TT AT AT AA AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 280061
Total number of repeats detected.............. 8
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 1 2 1 0 0 1 0 1 1 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 1 2 1 0 0 1 0 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 1 TA = 2
2 AG + 1 GA + 1 CT + 1 TC = 5
0 GT + 1 TG + 0 CA + 0 AC = 1
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7294349|gb|AE003533.1|AE003533 Drosophila melanogaster genomic scaffold 142000013386050 section 20 of 54, complete sequence
Position Repeat Coverage Repeat
12052 AT * 10 18/20 AT AT AT AT AT AT TT TT AT AT
20338 CA * 12 22/24 CA CA CA AA CA CA CA CA CT CA CA CA
26500 TG * 12 22/24 TG TG TC TG TG TG TG TG TG TG TG CG
30836 CA * 12 23/24 CA CA CA CA CA CA CA CA CA CA CA CT
33952 TC * 20 36/40 TC TC TC TC CC TA TC TC TC TC TC TC TC TC TC TT TC TC TC TG
34035 CA * 10 19/20 CA CA CA CA CA GA CA CA CA CA
34257 AC * 10 18/20 AC AT AC AC AC AC AC AC AC AT
39210 GT * 12 23/24 GT GT GT GT GT GT GT GT GT GT GT GC
40120 TA * 10 18/20 TA TA TA TT TC TA TA TA TA TA
40141 TA * 10 18/20 TA TA TA TA TA TA TA TA TA AG
58162 TG * 10 18/20 TG TG AG TG TG TG TG TG TG TT
67276 TA * 12 22/24 TA TA TA TA TA TA TA TG TA TA TA TT
69872 AG * 20 36/40 AG AG AG GT AG AG AG AG AG AG AG AG AG AG AG AG GG AG AG GG
81147 TG * 12 22/24 TG AG TA TG TG TG TG TG TG TG TG TG
83537 AC * 10 18/20 AC AC AC AC AC AC AC TC AG AC
86128 AT * 15 28/30 AT AT AT GT AT AT AT AT AT AT AT AT GT AT AT
88311 AC * 11 21/22 AC AC AC AC AC AC AC AC AC AC AG
88798 CA * 16 30/32 CA CA CA CA CA CA CA CA CA CA CC CA CA CA CT CA
99071 GT * 10 18/20 GT GC GT TT GT GT GT GT GT GT
105977 TG * 12 22/24 TG CG TG TG TG CG TG TG TG TG TG TG
166399 GA * 13 24/26 GA GA AA GA GA GA GA GA GA GA GA GA GC
167258 AG * 10 18/20 AG AG AG GG AG AG AG CG AG AG
204156 TA * 10 18/20 TA TA TA AG TA TA TA TA TA TA
240618 AT * 11 20/22 AT AT TT AT AT AA AT AT AT AT AT
259690 AT * 10 18/20 AT AT AT CT AT AT AT AT AG AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 275076
Total number of repeats detected.............. 25
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 4 1 1 3 3 4 2 0 0 0 0
15 to 19 1 0 0 0 0 1 0 0 0 0 0 0
20 to 24 0 0 1 0 0 0 0 0 1 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 4 2 1 3 4 4 2 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 4 TA = 8
2 AG + 1 GA + 0 CT + 1 TC = 4
2 GT + 4 TG + 4 CA + 3 AC = 13
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7294302|gb|AE003532.1|AE003532 Drosophila melanogaster genomic scaffold 142000013386050 section 19 of 54, complete sequence
Position Repeat Coverage Repeat
33548 CA * 10 18/20 CA CA CA CA CA CA CA CA CG AA
35111 GA * 10 18/20 GA CT GA GA GA GA GA GA GA GA
38774 AC * 12 23/24 AC AC AC AC AC AC AC AT AC AC AC AC
69395 AT * 11 20/22 AT AT AT AT AC AT AC AT AT AT AT
91144 GT * 10 18/20 GT GT GT GT GT GT GT GT TT AT
111517 GT * 10 18/20 GT GG AT GT GT GT GT GT GT GT
114390 AC * 11 20/22 AC AC AC AC GC AC AC AC AG AC AC
173388 CA * 10 18/20 CA CA CA CA CA CA CA TA CA TA
177511 TA * 10 18/20 TA TC TA TA TA TA TA TA TA TT
183913 TA * 10 18/20 TA TA AA TA TA TA TG TA TA TA
185669 CA * 10 18/20 CA CA CA CA CA CA CG CA CG CA
195071 AG * 12 22/24 AG AG AG AT AG AG AG AG AG AG CG AG
201261 AT * 13 25/26 AT AT AT AT AT AT AT AT AT AT AC AT AT
203726 GT * 10 19/20 GT GT GT GT GT GT GT GT GT GA
232525 TG * 10 18/20 TG TG TG CG TG TA TG TG TG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 295377
Total number of repeats detected.............. 15
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 2 1 1 2 3 1 3 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 2 1 1 2 3 1 3 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 2 TA = 4
1 AG + 1 GA + 0 CT + 0 TC = 2
3 GT + 1 TG + 3 CA + 2 AC = 9
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7294291|gb|AE003531.1|AE003531 Drosophila melanogaster genomic scaffold 142000013386050 section 18 of 54, complete sequence
Position Repeat Coverage Repeat
2375 TA * 12 22/24 TA AA TA TA TA TA TA TA TA TA CA TA
9103 CA * 10 18/20 CA CG CA CA CA CA CA CA CA TA
35412 GT * 10 18/20 GT GT GC GA GT GT GT GT GT GT
67236 TA * 15 27/30 TA TA TA TA TA TA TA TA TA CA TA TA TA TA GC
87206 TG * 12 22/24 TG TG TG TG TG CT TG TG TG TG TG TG
97727 GT * 16 30/32 GT GC GG GT GT GT GT GT GT GT GT GT GT GT GT GT
135014 TG * 10 18/20 TG AG TG TG TG TG TG TG CG TG
146622 AT * 10 18/20 AT AC AC AT AT AT AT AT AT AT
146663 AT * 13 24/26 AT AT AT AT TT AT AT AT AT AT AT AT AC
159408 TG * 10 18/20 TG TG TC TG TG TG AG TG TG TG
162147 CA * 12 22/24 CA CA CA CA CC CA CA CA CA CG CA CA
165695 CA * 10 18/20 CA CA CG CA CA CA CA CA CA CC
203580 AC * 10 18/20 AC AC AC AC AC TC AC AC AC TC
209013 TG * 16 29/32 TG TA CG TG TG TG TG TG TG TG TG TG TG TG TG TA
215758 CA * 12 22/24 CA CA CA CA CA CA CA TA CA CA CA CG
215891 TG * 17 31/34 TG TG TG TG TG TG TG TG TG TG TG TT TG TG AG TG TT
219018 TA * 13 24/26 TA TA TA TG TA TA TA GA TA TA TA TA TA
221127 GT * 11 20/22 GT GT GT GT TT GT GT GT GT GT GC
243193 AC * 10 18/20 AC AC AC AC AC AC AC AC AG AA
266743 GT * 11 20/22 GT GT GC GT GT GT GT GT GT GT TT
268906 TA * 10 18/20 TA TA TA TA TT TA TA TG TA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 274277
Total number of repeats detected.............. 21
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 3 0 0 2 4 3 3 0 0 0 0
15 to 19 0 1 0 0 0 0 2 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 4 0 0 2 4 5 4 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 4 TA = 6
0 AG + 0 GA + 0 CT + 0 TC = 0
4 GT + 5 TG + 4 CA + 2 AC = 15
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7294232|gb|AE003530.1|AE003530 Drosophila melanogaster genomic scaffold 142000013386050 section 17 of 54, complete sequence
Position Repeat Coverage Repeat
25659 GT * 11 20/22 GT GT AT GT GT GT GT GT GT GT GG
30644 CA * 11 20/22 CA CA CG CA CA CA CA CA CA CA CT
37355 CA * 10 18/20 CA CA GG CA CA CA CA CA CA CA
38874 AG * 13 24/26 AG AG AG AG AG AG AG AG AG AG AG TG CG
41991 AT * 12 22/24 AT TT AT AT AT AT AT AT AT AT AT AC
44329 AC * 10 18/20 AC AT GC AC AC AC AC AC AC AC
122228 GT * 11 20/22 GT AT AT GT GT GT GT GT GT GT GT
145006 AT * 10 18/20 AT AT AT AT AT AT TT AT GT AT
148437 CT * 13 24/26 CT CT CT CT CA CT CT CT CT CT CT CT GT
166929 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA GA CA GA
176290 AC * 10 18/20 AC GC AC AC AC AC AC GC AC AC
220707 AT * 11 20/22 AT AC AT AT AT AT AT AT AT AT AG
223138 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GT GT TT AT
227231 TA * 11 21/22 TA TA TA TA TG TA TA TA TA TA TA
227255 TA * 16 29/32 TA TA TA TA TA TA TA TA TA CA TA TA TA TC TA CA
227287 GA * 11 20/22 GA GA GA GG GA GA GA AA GA GA GA
232275 GT * 12 22/24 GT CT GC GT GT GT GT GT GT GT GT GT
232984 TC * 10 18/20 TC TC TT TG TC TC TC TC TC TC
260583 CT * 12 22/24 CT TT CT CT CT CT CT CT CT CT CT AT
275454 TG * 11 21/22 TG TG TG TG TG TG TG TG TG TC TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 279136
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 1 1 1 2 3 1 4 1 2 0 0
15 to 19 0 1 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 2 1 1 2 3 1 4 1 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 2 TA = 5
1 AG + 1 GA + 2 CT + 1 TC = 5
4 GT + 1 TG + 3 CA + 2 AC = 10
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7294198|gb|AE003529.1|AE003529 Drosophila melanogaster genomic scaffold 142000013386050 section 16 of 54, complete sequence
Position Repeat Coverage Repeat
21231 AT * 11 20/22 AT AC AT AT AT AT GT AT AT AT AT
26457 AT * 11 20/22 AT GG AT AT AT AT AT AT AT AT AT
32020 GA * 10 18/20 GA TA GA GA GA GA GG GA GA GA
70566 AT * 13 24/26 AT AT AT AT GT AT AT AT AT AT AT AT CT
83379 AT * 10 18/20 AT AT AT AT AT AA AT AC AT AT
95896 GT * 13 24/26 GT GT GA GT GT GT GT GT GT GT TT GT GT
106211 AT * 11 20/22 AT AT AT AC AT AT AT AT AT AA AT
108682 TC * 13 24/26 TC TC TC TG TC TC GC TC TC TC TC TC TC
123122 AC * 12 22/24 AC AC TC AC AC AC AC AC AC AC AC TC
126499 GT * 12 22/24 GT GT GT GA CT GT GT GT GT GT GT GT
133122 AT * 13 24/26 AT AT AT AT AA AT AT AT AT AT AT AT TT
142407 TA * 12 22/24 TA TA TA CA TA TA TA TA TG TA TA TA
155231 TG * 14 26/28 TG TG TG TG TG TG TG TG TG TA TG TG TG TT
157236 TC * 11 20/22 TC TC TC TA TC TC TC TC TC TC TG
162589 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AC AA TC
181179 TA * 11 20/22 TA TA TA TA TA TG TA CA TA TA TA
187073 TA * 11 21/22 TA TA TA TA TA TA TA TA TA TG TA
208596 TA * 10 19/20 TA TA TA TA TA TA TA TA TA CA
227918 CA * 10 18/20 CA GA CA TA CA CA CA CA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 252224
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 6 4 0 1 2 1 1 2 2 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 6 4 0 1 2 1 1 2 2 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
6 AT + 4 TA = 10
0 AG + 1 GA + 0 CT + 2 TC = 3
2 GT + 1 TG + 1 CA + 2 AC = 6
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7294145|gb|AE003528.1|AE003528 Drosophila melanogaster genomic scaffold 142000013386050 section 15 of 54, complete sequence
Position Repeat Coverage Repeat
15718 AG * 19 35/38 AG AG AG AG AG AG AA TG AG AG AG AG AG AG AG AG AG AG GG
17615 AT * 11 20/22 AT TT AT AT AC AT AT AT AT AT AT
21790 AC * 12 22/24 AC AC AC AC AC AC AC AC AC TC AC AA
45291 AT * 10 18/20 AT TT AT AT AT AT GT AT AT AT
60146 TC * 10 18/20 TC TC TT TC TC TC TC TC TC CC
61393 CA * 11 20/22 CA CA CA CA CA CA CA CA CA GA TA
61415 TA * 10 18/20 TA TA TT GA TA TA TA TA TA TA
81431 AG * 11 20/22 AG AG AG AG AG AG AG AG AG AG CC
92649 CT * 13 24/26 CT CT CT CT CT CT CT CT CT GT CT CT CC
110341 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
111112 AG * 10 18/20 AG AC AG AG CG AG AG AG AG AG
121259 CA * 12 22/24 CA CA CG CA CA CA CA CA CA CA CA TA
121532 TG * 11 20/22 TG TG TG TG TG TG TA TG TG TG CG
129618 CT * 10 18/20 CT CT CT CT CG CT CT CT GT CT
135883 TA * 10 18/20 TA TC TA TA TA AA TA TA TA TA
139827 AG * 10 18/20 AG AG AG AG AG AG AG AG CG CG
140186 AC * 10 18/20 AC TC AC AC AC AC AC AC AC AT
141821 CT * 12 23/24 CT CT CG CT CT CT CT CT CT CT CT CT
144565 AC * 10 18/20 AC AC AC AC TC AT AC AC AC AC
146495 TG * 11 20/22 TG TG TG TG TG TG TG CC TG TG TG
146608 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA CC CT
147487 AT * 14 26/28 AT AC AT AT AT AT AT AT AT AT GT AT AT AT
149178 AG * 10 18/20 AG CA AG AG AG AG AG AG AG AG
165903 AT * 11 20/22 AT AT AT AT AA AT AT AT AT AT AA
171703 GT * 10 18/20 GT GT GT GC GT GT GT TT GT GT
222797 AT * 10 18/20 AT AT AT AT AT AT AT AT TC AT
226580 AT * 13 24/26 AT AT AT AT AT AA AT AT AT GT AT AT AT
251571 TC * 10 18/20 TC GC GC TC TC TC TC TC TC TC
253887 CT * 12 22/24 CT CC CT CT CT CA CT CT CT CT CT CT
256787 AG * 12 22/24 AG AG TG AG AG AG AG TG AG AG AG AG
260255 GA * 11 20/22 GA AT GA GA GA GA GA GA GA GA GA
260467 CA * 15 28/30 CA CG CA CA CA CA GA CA CA CA CA CA CA CA CA
275021 TG * 12 22/24 TG TG TG CG TG TA TG TG TG TG TG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 283712
Total number of repeats detected.............. 33
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 7 2 5 1 3 3 3 1 2 4 0 0
15 to 19 0 0 1 0 0 1 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 7 2 6 1 3 4 3 1 2 4 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
7 AT + 2 TA = 9
6 AG + 1 GA + 4 CT + 2 TC = 13
1 GT + 3 TG + 4 CA + 3 AC = 11
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7294090|gb|AE003527.1|AE003527 Drosophila melanogaster genomic scaffold 142000013386050 section 14 of 54, complete sequence
Position Repeat Coverage Repeat
11831 GT * 10 18/20 GT GC GT GT GT GT GT GT GT GA
22408 AC * 11 20/22 AC AC AC AC AA AC AC AC GC AC AC
55253 GT * 11 20/22 GT AT GT GT GT GT GT GT GT GA GT
55444 GT * 13 24/26 GT GC GG GT GT GT GT GT GT GT GT GT GT
68314 AC * 11 20/22 AC AC AT GC AC AC AC AC AC AC AC
71483 AC * 14 26/28 AC AC AC AC AC AC AC AT AC AC AC AC AC AG
94292 AC * 17 31/34 AC AC AC AC AC AC AC AC AC GC AC AC AC AC AC AC TT
105226 TA * 12 22/24 TA TA TA TG TA TA TA TA TA AA TA TA
107488 TA * 11 20/22 TA TA TA TA TG TA TA TA TA TA AA
107778 TA * 10 18/20 TA TA TA TA TA TA TA TA TC TT
112894 AG * 12 22/24 AG AA AA AG AG AG AG AG AG AG AG AG
125632 AT * 12 22/24 AT AT AT AT AT AT AT AA AT AT TT AT
127847 AT * 14 26/28 AT AC AT AT AT AT AC AT AT AT AT AT AT AT
153576 TA * 10 18/20 TA AA GA TA TA TA TA TA TA TA
174962 TG * 10 18/20 TG TG TG CG TG TG TG TG TA TG
178946 TA * 10 18/20 TA TA TA TA TA TA CA TA TG TA
204299 AT * 10 18/20 AT AT AT AT GT AT AT AT AT TT
206062 GT * 10 18/20 GT GT GC GT GT GT GT CT GT GT
211420 AT * 10 18/20 AT GC AT AT AT AT AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 279679
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 5 1 0 3 0 1 4 0 0 0 0
15 to 19 0 0 0 0 1 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 5 1 0 4 0 1 4 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 5 TA = 9
1 AG + 0 GA + 0 CT + 0 TC = 1
4 GT + 1 TG + 0 CA + 4 AC = 9
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7294043|gb|AE003526.1|AE003526 Drosophila melanogaster genomic scaffold 142000013386050 section 13 of 54, complete sequence
Position Repeat Coverage Repeat
10673 GT * 10 18/20 GT GT GT GT GT GT AT GT GT AT
10756 CA * 10 18/20 CA CA CA CA CA CA CG CA TA CA
30080 AT * 15 27/30 AT AT AT AT AT GT AT AT AT AT AT AT AT AT TC
34998 CT * 17 31/34 CT CA CT CT CT CT CT CC CT CT CT CT CT CT CT CT CC
35965 TG * 17 31/34 TG TG TG TG TG TG TG TG TG TG TG TG TG AG TG TG CA
43803 GT * 11 20/22 GT AT GT GT GT GT GT TT GT GT GT
65043 TG * 11 20/22 TG TA TG TG TG TG TG TG TG TT TG
66113 AT * 11 20/22 AT AT AT TT AT AT AT AT AG AT AT
88487 AT * 10 18/20 AT AT AT TT AT AT AT AT AT AA
115772 AG * 10 18/20 AG AG AG AA AG AG AG AG AG AA
123195 AT * 10 18/20 AT AT AT AT AT AG AA AT AT AT
133736 AT * 11 20/22 AT AC AT AT AT AT AC AT AT AT AT
139571 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AG AG
151342 AC * 10 18/20 AC AA AA AC AC AC AC AC AC AC
155158 CA * 10 18/20 CA CA CA CA CG TA CA CA CA CA
156415 TG * 10 18/20 TG TG TG TG TG TG TG TG GG GG
174888 GT * 35 63/70 GT TT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GA GT GT GA GT GT GT GA GT GG AG
187909 AC * 16 29/32 AC AC TC AC AC AC AC AC AC AC AC AC AC AC AT GC
204487 TG * 11 20/22 TG AT TG TG TG TG TG TG TG TG TG
217158 TG * 10 19/20 TG TG TG CG TG TG TG TG TG TG
232591 CA * 10 18/20 CA CA CA CA CA CA CA CT CG CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 280887
Total number of repeats detected.............. 21
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 0 1 0 1 3 4 2 0 0 0 0
15 to 19 1 0 0 0 1 0 1 0 0 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 1 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 6 0 1 0 2 3 5 3 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
6 AT + 0 TA = 6
1 AG + 0 GA + 1 CT + 0 TC = 2
3 GT + 5 TG + 3 CA + 2 AC = 13
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7294009|gb|AE003525.1|AE003525 Drosophila melanogaster genomic scaffold 142000013386050 section 12 of 54, complete sequence
Position Repeat Coverage Repeat
517 CT * 12 22/24 CT CG CT CG CT CT CT CT CT CT CT CT
2263 AC * 10 18/20 AC AC AC AC AC AC AT AC AC AG
3257 CA * 15 27/30 CA GA CA CA CA CA CA CA CA CA CA CA CA CA AG
4978 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CT CG CA
7374 CA * 17 31/34 CA CA CA CA CA CA CA CA CA CA CA CA CA CT GG CA CA
8644 GT * 11 20/22 GT GT GT GG GT GT GC GT GT GT GT
13750 GT * 10 18/20 GT GT GT GT GT GT GT GC GA GT
15641 TG * 10 18/20 TG TG TG TC TG TG TG TG TG GG
22318 AC * 12 23/24 AC AC AC AC AC AC AC AC AC AC AC AG
23138 AC * 12 22/24 AC AC AA TC AC AC AC AC AC AC AC AC
23174 AG * 10 18/20 AG AG AG AG AG AG AG AG AG GA
24047 TG * 10 18/20 TG TG TG TG TG TG TG TG TA CG
25870 TG * 11 21/22 TG TG TG TG TG TG TG TG TG TG TA
31022 TA * 10 18/20 TA TA TA TA TA AA GA TA TA TA
32473 AC * 13 24/26 AC AC CA AC AC AC AC AC AC AC AC AC AC
33718 TC * 13 24/26 TC TC TC TC TT TC TT TC TC TC TC TC TC
39428 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AA AG
45708 AC * 10 18/20 AC AC AC AC AC AC GC GC AC AC
46544 CA * 12 22/24 CA CA CA AA CG CA CA CA CA CA CA CA
50074 CA * 15 27/30 CA CA CA CA CA CA CA CA CA CA CA CA CG TA TA
50912 TG * 12 22/24 TG TG TG TG TG TG TG TA TG GG TG TG
53584 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TC CG
56259 CA * 12 23/24 CA CA CA CG CA CA CA CA CA CA CA CA
57910 CA * 18 33/36 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA AA CA GT
59088 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TG TG TG TG GG CC
60566 AC * 17 31/34 AC AC AT AC CC AC AC AC AC AC AC AC AC AC AC AC TC
75284 AG * 10 18/20 AG AG AG AG AG AG AG AG AG GT
77133 AC * 15 27/30 AC AC AC AC AC AC AC AC AC AC AC AC AG AC CA
85404 TC * 11 20/22 TC TC TC TC TA TC TC TC TC TC TT
86066 AC * 12 23/24 AC AC AA AC AC AC AC AC AC AC AC AC
87417 CA * 12 22/24 CA CC CA CA CA CA TA CA CA CA CA CA
87665 CA * 10 18/20 CA CG AA CA CA CA CA CA CA CA
90124 AT * 12 22/24 AT AT AG AC AT AT AT AT AT AT AT AT
91423 CA * 17 31/34 CA CA CA CA CA CT CA CA CA CA CA CA CA CA CA CT GA
92857 AC * 13 24/26 AC AG AC AC AC AC AC AC AC AC AC AC TC
95160 AC * 10 18/20 AC CC AA AC AC AC AC AC AC AC
98733 AT * 10 18/20 AT AT AT AC AT AT AT AT AC AT
99539 TA * 11 20/22 TA TA TA TA TA TA TA TA TC AA TA
108573 CA * 12 22/24 CA CA AA CA CA CA AA CA CA CA CA CA
110346 GT * 11 20/22 GT GT GC GT CT GT GT GT GT GT GT
126223 CT * 13 24/26 CT CT CT CT CT CT CT CT CT CT CT CA CC
154609 AG * 10 19/20 AG AG AG AG AG AG AG AG AG GG
171460 CA * 13 24/26 CA CA CA CA CG CA CA CT CA CA CA CA CA
192357 AG * 11 20/22 AG AG AG AG AG AA AG AG AG AA AG
234692 TG * 10 18/20 TG TG TC TG TG TG CG TG TG TG
261269 AC * 16 29/32 AC AC AC AC AC AC AC AC AC AC AC AC AG GC AC CC
-----------------------------------------------------------------------------------------
Total sequence length......................... 291880
Total number of repeats detected.............. 46
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 2 4 0 9 7 6 3 2 2 0 0
15 to 19 0 0 0 0 3 5 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 2 4 0 12 12 7 3 2 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 2 TA = 4
4 AG + 0 GA + 2 CT + 2 TC = 8
3 GT + 7 TG + 12 CA + 12 AC = 34
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7293975|gb|AE003524.1|AE003524 Drosophila melanogaster genomic scaffold 142000013386050 section 11 of 54, complete sequence
Position Repeat Coverage Repeat
31728 TG * 21 38/42 TG TG TG TG TG TG TG TG TT TG TG TG TG TG TG TG TG CG TG TG AT
33926 TA * 11 20/22 TA TA TA CA TA TA TA TA TA TA TG
33952 AC * 12 23/24 AC AC AC CC AC AC AC AC AC AC AC AC
37207 AT * 12 23/24 AT AT AT AT AT AT AT AT GT AT AT AT
45570 CA * 10 18/20 CA CA CA CA CA CA CA CA CA TT
45806 TA * 10 18/20 TA TA TA TA TA TA CA TA TG TA
46030 AC * 12 22/24 AC AC AG AC AC AC AC AC AC AC AC AG
46904 TG * 10 18/20 TG TG TG TG TG CG CG TG TG TG
47122 TA * 10 18/20 TA TT TA TA TA TA TA TA TA TG
48022 CA * 18 33/36 CA CA CA CA CA CA CA CA CA CA CA CA CA CA TA TG CA CA
50354 TA * 16 29/32 TA TA CA TA TA TA TA TA GA TA TA TA TA TA TA CA
50388 TA * 10 18/20 TA TA TA TA GA TA TG TA TA TA
51700 TG * 10 18/20 TG CG TG TG TG TG TG TG TG CG
52147 AC * 11 20/22 AC AC AC TC GC AC AC AC AC AC AC
52642 TG * 10 19/20 TG GG TG TG TG TG TG TG TG TG
52805 GT * 10 19/20 GT CT GT GT GT GT GT GT GT GT
53616 CA * 12 22/24 CA CA CG CA CA CA CA CG CA CA CA CA
72821 AG * 12 23/24 AG AG AG AG AG AG AG AG AG AG AG TG
86798 CA * 10 18/20 CA CA CA TA CA CA CA CA AA CA
99732 CA * 11 20/22 CA CA CT CA CA CA CA TA CA CA CA
136167 AT * 13 24/26 AT AT AT TT AT AT AT AT AT AA AT AT AT
136194 TA * 13 24/26 TA TA TA TA TA AA TA TA TA TA AA TA TA
143815 AC * 13 24/26 AC GC AC AC AC AC AC AC AC AC AC AC AA
144342 CA * 10 18/20 CA CT CA CC CA CA CA CA CA CA
144525 CA * 15 27/30 CA CA CA CA CA CA CA CA CA CA CA CA CC TA AA
157765 TG * 17 32/34 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG GA
188472 GT * 11 20/22 GT GT GT GT GT GG GT GT GT GT GG
190218 TG * 12 22/24 TG TG TG TG TG TG TG TT TG TC TG TG
190243 GT * 10 18/20 GT GT GT GT GT GT GT GT GT AA
195331 TG * 13 25/26 TG TG TG TG TG TT TG TG TG TG TG TG TG
203229 CA * 14 26/28 CA CA CA CA CA CA CA CA CA CA AA CA CA CT
216354 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA CC CG
220483 TG * 13 24/26 TG TT TG TG TG TG TG TG TG TG TG AG TG
224165 TG * 15 28/30 TG TG TG TG TG TG TG TG TG TG TG TG TG TT TC
225775 GT * 12 22/24 GT GT GA GT GT GC GT GT GT GT GT GT
226880 AT * 12 22/24 AT AT AT AT AT CT AT AT AT AT TT AT
233097 CA * 11 20/22 CA CA CA CA CA GA CA CA CA CA CC
239208 CA * 12 22/24 CA CA CA CA CA CA TA CA CA GA CA CA
243616 TG * 11 20/22 TG TC TT TG TG TG TG TG TG TG TG
248473 GA * 11 20/22 GA GA GA GA GA GA GA GA GA AA TA
264931 AC * 12 22/24 AC AA AC AC AC AC AC AC AC AC AC CC
265556 CT * 11 20/22 CT CT CA CT CT CT CT CT CT CT TT
271106 CT * 12 22/24 CT CG CT CT CT CT CT CT CT CT GT CT
273558 TA * 13 25/26 TA TA TA TA TA TA TA TA TA TG TA TA TA
276658 AT * 10 18/20 AT AT AT AT AT AT AT AT CT GT
278805 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AC AT AT
285938 TG * 11 20/22 TG TG TG TA TC TG TG TG TG TG TG
287132 TG * 10 18/20 TG TG CG TG TG TT TG TG TG TG
289274 AC * 15 28/30 AC AC AC AC AC AA TC AC AC AC AC AC AC AC AC
294821 AT * 15 27/30 AT AT CT AT AT AT AC AT AT AT AT AT AT AT AC
311467 TG * 11 20/22 TG TG TG GG TC TG TG TG TG TG TG
312925 CA * 11 20/22 CA CA CA CG CA CG CA CA CA CA CA
318208 CA * 14 26/28 CA CA CA CA CA CA CA CA CA CA CA CA CT CC
323314 AC * 21 38/42 AC TC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AT GT
324342 TG * 10 18/20 TG CG TG TG TG TG TG TG TA TG
330659 CA * 11 20/22 CA CG CA CA CA CA CA CA CA CA CT
334649 CT * 12 22/24 CT CT AT CT CT CT CT CT CT CT GT CT
-----------------------------------------------------------------------------------------
Total sequence length......................... 335868
Total number of repeats detected.............. 57
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 6 1 1 6 12 11 4 0 3 0 0
15 to 19 1 1 0 0 1 2 2 0 0 0 0 0
20 to 24 0 0 0 0 1 0 1 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 7 1 1 8 14 14 4 0 3 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 7 TA = 12
1 AG + 1 GA + 3 CT + 0 TC = 5
4 GT + 14 TG + 14 CA + 8 AC = 40
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7293946|gb|AE003523.1|AE003523 Drosophila melanogaster genomic scaffold 142000013386050 section 10 of 54, complete sequence
Position Repeat Coverage Repeat
3324 AT * 10 18/20 AT AT AT GT AT TT AT AT AT AT
8681 TG * 11 20/22 TG TG TG TG TG TA TG TG GG TG TG
8871 TG * 10 19/20 TG GG TG TG TG TG TG TG TG TG
76444 CA * 21 38/42 CA CA CA CC CG CA CA CA CA CA CA CA CA CA CA CA CA CA GA CG CA
78256 TG * 14 26/28 TG TG TG TG TG TG TG TG TG TG TT TG TG GG
86133 TG * 12 22/24 TG TG TG TG TG TG TG TG TT GG TG TG
86319 CA * 10 18/20 CA CA CA CA CA CA CA CA AG CA
97152 AC * 11 21/22 AC AC AC AC AC AC AA AC AC AC AC
105993 AT * 10 18/20 AT AT CT GT AT AT AT AT AT AT
109084 GT * 12 22/24 GT GT GT GT GT GC GT GT GT CT GT GT
118472 AG * 16 30/32 AG AT AG AG AG AG AG AG AG AG AG AG AG AG AG AT
142132 AT * 10 18/20 AT AT AT GT AT AT AT AT AT AA
168738 TC * 12 22/24 TC TC AC TC AC TC TC TC TC TC TC TC
170771 AG * 17 31/34 AG AG AG AG AG AG AG AG GG AG AG AG AG AG AG CG CG
177868 TA * 10 19/20 TA TA TA TA TA TA TA TA TA TT
181738 TG * 10 18/20 TG TG TG TG TT TG TG TG GG TG
186889 AG * 11 20/22 AG CG AG AG AG AG AG AG AG AG CG
187046 CA * 11 21/22 CA CA CA CA CA CA CA CG CA CA CA
189104 AT * 18 33/36 AT TT AT AT AT AT AT AT AT AT AT AT TT AT AT AT AT AG
192912 AC * 11 20/22 AC AC AC AA AC AC AC AC AC AC TC
199604 AG * 11 20/22 AG AG AG AG AG AG AG GG AG AG AA
200861 AC * 11 20/22 AC AT GC AC AC AC AC AC AC AC AC
205354 GT * 12 22/24 GT CT CT GT GT GT GT GT GT GT GT GT
205565 CA * 13 25/26 CA CA CA CA CA CA CA CA CA CA CA CA GA
211079 GT * 10 18/20 GT GT GA AT GT GT GT GT GT GT
213687 GT * 11 20/22 GT GC GT GA GT GT GT GT GT GT GT
213888 AG * 15 27/30 AG AG AG AG AG AG AG AG AG AG TG AA AG AG TG
216164 AT * 10 18/20 AT AT AC TT AT AT AT AT AT AT
216186 AT * 10 19/20 AT AT AT AT AT AA AT AT AT AT
220192 CA * 11 20/22 CA CG CA CA CA CA CA CA CA AA CA
221408 TG * 11 20/22 TG TG TG TG TG TG TG CG GG TG TG
236192 TA * 10 18/20 TA AA TA TA TA TA TA TA TA TC
273228 GT * 10 18/20 GT GT GT TT GT GT GT GT GT GC
276922 TG * 12 22/24 TG TG TG TG TG TG TG TG AG TG CG TG
277007 CA * 10 18/20 CA CA CA CT CA CA CA GA CA CA
278177 TG * 10 18/20 TG TG TG TA TT TG TG TG TG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 283337
Total number of repeats detected.............. 36
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 2 2 0 3 5 8 5 1 0 0 0
15 to 19 1 0 3 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 1 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 6 2 5 0 3 6 8 5 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
6 AT + 2 TA = 8
5 AG + 0 GA + 0 CT + 1 TC = 6
5 GT + 8 TG + 6 CA + 3 AC = 22
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7293918|gb|AE003522.1|AE003522 Drosophila melanogaster genomic scaffold 142000013386050 section 9 of 54, complete sequence
Position Repeat Coverage Repeat
1673 TC * 15 27/30 TC TC TC TC TC TC TC TC TC TC TG TC TC TG TT
13121 AG * 10 18/20 AG AG AG AG AG AA AG AG AG AC
22612 TA * 11 20/22 TA TA TC TA TA TC TA TA TA TA TA
30812 TA * 10 18/20 TA TA TG TA TT TA TA TA TA TA
34490 TG * 18 33/36 TG TG TG TG TG TG TG TG TG TG TG TG CG AG AG TG TG TG
47320 CA * 13 24/26 CA CT CA CA CA CA CA CA CA CA CA CA CG
52250 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AA GC
58389 CT * 12 22/24 CT CT CT CT CT CT CT CT CT CT CA TT
59054 AG * 11 21/22 AG AG AG AG AG AG AG AG AG AG TG
60158 GT * 10 18/20 GT GT GC GT GT GT CT GT GT GT
85755 TC * 11 20/22 TC TC TC GC TC TC TC TC TC TC TT
94687 AG * 12 22/24 AG AG AG AG AG AG AG AG GG AG AA AG
99329 TG * 11 20/22 TG GG TG TG TG TG AG TG TG TG TG
101602 CA * 21 38/42 CA CA CA CA CA CA CA CA CA CA CA CA CG CA CA AA CA CA CA TG CA
112544 CA * 12 22/24 CA CA CA CA CA CG CA CA CA AA CA CA
112665 TG * 12 22/24 TG CG TG TG TG TG TG TG TG TG TG AG
114681 AT * 11 20/22 AT AA AT AT AT AC AT AT AT AT AT
114767 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AT AG
116309 TC * 15 27/30 TC TC TC TC TC TC TC TG TC TC TC TC TC TG CC
129992 TA * 10 18/20 TA TT AA TA TA TA TA TA TA TA
158318 CA * 11 20/22 CA GG CA CA CA CA CA CA CA CA CA
177167 TA * 12 22/24 TA TA TA TA TA TA TC TA TA TA TA AA
285060 TG * 15 27/30 TG GA TG TG TG TG TG TG TG TG TG TG TG TG TC
289700 AC * 10 18/20 AC AC AC AC AC AC AC AC AC GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 290837
Total number of repeats detected.............. 24
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 4 3 0 3 3 2 1 1 1 0 0
15 to 19 0 0 0 0 0 0 2 0 2 0 0 0
20 to 24 0 0 0 0 0 1 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 4 3 0 3 4 4 1 3 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 4 TA = 5
3 AG + 0 GA + 1 CT + 3 TC = 7
1 GT + 4 TG + 4 CA + 3 AC = 12
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7293901|gb|AE003521.1|AE003521 Drosophila melanogaster genomic scaffold 142000013386050 section 8 of 54, complete sequence
Position Repeat Coverage Repeat
451 AT * 10 18/20 AT AT AT AT AC AT AC AT AT AT
5421 CT * 12 23/24 CT CT CT CT CT CT CT CT CT CT CT AT
78524 GT * 10 18/20 GT GT GT GT GT GT GT GT GG GG
120741 AT * 10 18/20 AT AT AT AT AT AT AT AT AC AA
144854 AC * 12 23/24 AC AC AC AC AC GC AC AC AC AC AC AC
145696 AT * 11 20/22 AT AT AT TT AT AT AT AT AT TT AT
146585 AT * 10 18/20 AT AT AT AC AT AT AC AT AT AT
163829 GA * 15 27/30 GA AA TA GA GA GA GA GA GA GA GA GA GA GA AA
165714 CA * 10 19/20 CA CA CA CA CA CA CC CA CA CA
202542 CT * 17 31/34 CT CT CT CT CT CT CT CT CT CT CT CT TT CT CT CT TG
228494 AT * 10 18/20 AT GT AT AT AA AT AT AT AT AT
237486 AT * 10 18/20 AT AC AT AT AT AT AT TT AT AT
237508 AT * 16 29/32 AT AT AT AC AT AT AT AC AT AT AT AT AT AT GT AT
245111 CT * 11 20/22 CT CC CT CT CT CT CT CG CT CT CT
264861 AG * 14 26/28 AG AG AA AG GG AG AG AG AG AG AG AG AG AG
266714 TG * 11 20/22 TG TT TG TG TG TG TG TG TG TG CG
-----------------------------------------------------------------------------------------
Total sequence length......................... 271237
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 6 0 1 0 1 1 1 1 0 2 0 0
15 to 19 1 0 0 1 0 0 0 0 0 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 7 0 1 1 1 1 1 1 0 3 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
7 AT + 0 TA = 7
1 AG + 1 GA + 3 CT + 0 TC = 5
1 GT + 1 TG + 1 CA + 1 AC = 4
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7293883|gb|AE003520.1|AE003520 Drosophila melanogaster genomic scaffold 142000013386050 section 7 of 54, complete sequence
Position Repeat Coverage Repeat
61996 TG * 10 18/20 TG AG TG TG TG TG TG TC TG TG
93744 GT * 10 18/20 GT TT GT GT GT GT GC GT GT GT
102695 TG * 11 20/22 TG AG TG TG TG TG TG TG TG CG TG
106638 AT * 10 18/20 AT AT AT AT AT AA AT AC AT AT
141077 GT * 13 24/26 GT CT GT GT GT GT GT GT GT GT GT GT GA
193976 AT * 12 22/24 AT TT AT TT AT AT AT AT AT AT AT AT
202937 GA * 13 24/26 GA CA GA GA GA GA GA GA GA AA GA GA GA
210922 AT * 11 20/22 AT AT AT AT AT AT AC AT AT AT TT
226915 AT * 10 18/20 AT GC AT AT AT AT AT AT AT AT
227716 GT * 10 18/20 GT GT GT GT GT GG TT GT GT GT
237170 CA * 11 20/22 CA AA AA CA CA CA CA CA CA CA CA
269863 AC * 10 18/20 AC AC AC AC AC AC AC AC AC GA
-----------------------------------------------------------------------------------------
Total sequence length......................... 292222
Total number of repeats detected.............. 12
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 0 0 1 1 1 2 3 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 0 0 1 1 1 2 3 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 0 TA = 4
0 AG + 1 GA + 0 CT + 0 TC = 1
3 GT + 2 TG + 1 CA + 1 AC = 7
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7293842|gb|AE003519.1|AE003519 Drosophila melanogaster genomic scaffold 142000013386050 section 6 of 54, complete sequence
Position Repeat Coverage Repeat
57927 TA * 10 18/20 TA TA TA TA TA AA TA TT TA TA
66970 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG TG CC
66997 GT * 10 18/20 GT GT GT GT GT GT GT GT GA GC
72979 AG * 17 32/34 AG AG AG AG AG AG CG AG TG AG AG AG AG AG AG AG AG
73122 AT * 10 19/20 AT AT AT AT AT AT AT AT AT GT
101909 GT * 12 23/24 GT GT GT GT GT GT GT GT GT GT GT GC
126313 AG * 15 28/30 AG AG AG AG AG AG AG AG AG AG AG CG GG AG AG
127853 CA * 10 18/20 CA CA CG CA CA CA CA CA CA CG
131293 TC * 23 42/46 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TA CC TC TG TA
134078 AC * 10 19/20 AC GC AC AC AC AC AC AC AC AC
137412 GT * 10 18/20 GT GT GT GC TT GT GT GT GT GT
139450 AT * 10 18/20 AT AT AT AT AT AA AT AC AT AT
148318 GT * 11 21/22 GT GT GT GT AT GT GT GT GT GT GT
153706 AG * 13 24/26 AG AG AG AG AG AG AG AG TG AG AG AG CG
153993 TA * 12 22/24 TA TA AA TA AA TA TA TA TA TA TA TA
160428 TG * 11 20/22 TG TA TG TG TG TG TG TG TG TG CG
178995 TG * 17 31/34 TG TG TG CG TG TG TG TG TG TG AG TG TG TG AG TG TG
183855 GT * 10 18/20 GT GT GT GT GC GT GT GT GT GC
214869 CA * 12 22/24 CA AA CA GA CA CA CA CA CA CA CA CA
226557 AT * 13 24/26 AT AG AT AC AT AT AT AT AT AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 276243
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 2 1 0 1 2 2 5 0 0 0 0
15 to 19 0 0 2 0 0 0 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 1 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 2 3 0 1 2 3 5 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 2 TA = 5
3 AG + 0 GA + 0 CT + 1 TC = 4
5 GT + 3 TG + 2 CA + 1 AC = 11
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7293817|gb|AE003518.1|AE003518 Drosophila melanogaster genomic scaffold 142000013386050 section 5 of 54, complete sequence
Position Repeat Coverage Repeat
2998 AT * 11 20/22 AT AT AT AT AT AC AT AT AT AT AG
15171 CA * 14 26/28 CA CA CA CA CA CA CA CA CA CA CA CA CC AA
34706 GT * 11 20/22 GT GT GT GT GT GT GT GT TT GG GT
40686 AT * 10 18/20 AT CT AT AT AT AT GT AT AT AT
60541 TG * 10 18/20 TG TG TG TG CG TG TG TG AG TG
95054 GT * 11 21/22 GT GT CT GT GT GT GT GT GT GT GT
107797 TG * 11 20/22 TG TG TG TG TG TG TG TC TG TG TA
111379 TA * 12 22/24 TA TA TA TA AA TA TA TA TA TA TA TT
117920 CT * 10 19/20 CT CT CT CT CT CT GT CT CT CT
127005 TG * 12 22/24 TG TG GG TG TG TG TT TG TG TG TG TG
127192 GA * 16 30/32 GA GA GA GA GA GA GA GA GA GA GA GA GA CA GA TA
140512 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC AC AC GT
159875 TG * 11 20/22 TG TG TG TG TG TG TG TG TG GG GG
160708 CT * 13 24/26 CT CT CT CT TT CT CT CT CT CT TT CT CT
166447 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CT CG CA
195752 TA * 10 18/20 TA TA TA TA AA TA TA TA TA GA
215124 AC * 11 20/22 AC AC GC AC AC AC AC AC AG AC AC
232309 CA * 11 20/22 CA CT CA CA CA CA CA CA CA CA CC
252346 GA * 10 18/20 GA AA GA GA GA GA GA GA GA GC
259070 TA * 11 20/22 TA TA TA TG TA TA TA TA TA TA CA
276113 CT * 11 20/22 CT CT CT CT CT CT CT CT CT CT TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 280289
Total number of repeats detected.............. 21
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 3 0 1 2 3 4 2 0 3 0 0
15 to 19 0 0 0 1 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 3 0 2 2 3 4 2 0 3 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 3 TA = 5
0 AG + 2 GA + 3 CT + 0 TC = 5
2 GT + 4 TG + 3 CA + 2 AC = 11
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7293794|gb|AE003517.1|AE003517 Drosophila melanogaster genomic scaffold 142000013386050 section 4 of 54, complete sequence
Position Repeat Coverage Repeat
787 TG * 12 22/24 TG TC TC TG TG TG TG TG TG TG TG TG
34644 AT * 16 30/32 AT AT AT AT AT AT AA AT AT AT AT AT AT AT AT CT
43554 AT * 13 24/26 AT AT AT AT AT AT AT AT AT CT AT AT AG
43862 CA * 17 31/34 CA GA CA CA CA CA CA CA CA CA CA CA CA CA GA CG CA
59171 TG * 10 18/20 TG TG TG TG TG TG TT TA TG TG
62505 CA * 15 28/30 CA CA CA CA TG CA CA CA CA CA CA CA CA CA CA
63913 AT * 10 18/20 AT TT AT AT AT AA AT AT AT AT
70108 GT * 15 27/30 GT GT GT GT GG GT GT GT GT GA GT GT GT GT GC
72245 CA * 10 19/20 CA CA CA CA CC CA CA CA CA CA
79841 AC * 12 23/24 AC AC AC AC AC AC AC AC AC AC AC AA
80307 AT * 10 18/20 AT AT AT AT AT AT AT AT GT TT
82044 GT * 15 27/30 GT GT GT GT GT GT GT GT AT GT GT GT GT GC GA
86238 TG * 17 32/34 TG AG CG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
101371 TA * 11 20/22 TA TA TA AA TA TA TA TA TC TA TA
102822 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG TG CA
107654 CA * 11 21/22 CA CA CA CA CA CA CA CG CA CA CA
128671 CA * 11 20/22 CA CC AA CA CA CA CA CA CA CA CA
180498 TA * 13 24/26 TA TA TA TA TA TA TA TA TA GA TA TT TA
181066 TG * 15 28/30 TG CT TG TG TG TG TG TG TG TG TG TG TG TG TG
195776 TA * 10 19/20 TA TA TA TA TA TA TA TA TA TT
199359 TA * 12 22/24 TA TA TA TA TA TA TA TA TA TA AA CA
209452 CT * 11 20/22 CT CT CT TT CT CT CC CT CT CT CT
222001 GT * 10 18/20 GT GT GT GT TT GT GT GA GT GT
235351 AC * 20 36/40 AC AC AC AC AC AC AC AC AC AC AC AC AC AG AA AC AC AC AC CT
237733 AT * 10 18/20 AT AT AT GT AT AT AC AT AT AT
241943 TA * 10 18/20 TA TA TA CA TA TA TA TA TA TG
246474 GT * 10 18/20 GT GT GG GT GT GT GC GT GT GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 257672
Total number of repeats detected.............. 27
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 5 0 0 1 3 3 2 0 1 0 0
15 to 19 1 0 0 0 0 2 2 2 0 0 0 0
20 to 24 0 0 0 0 1 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 5 0 0 2 5 5 4 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 5 TA = 10
0 AG + 0 GA + 1 CT + 0 TC = 1
4 GT + 5 TG + 5 CA + 2 AC = 16
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7293747|gb|AE003516.1|AE003516 Drosophila melanogaster genomic scaffold 142000013386050 section 3 of 54, complete sequence
Position Repeat Coverage Repeat
15159 CT * 12 22/24 CT CT CT CT TT CT CT CT CT CT CT CG
53900 TG * 11 20/22 TG TG TG TG TG TG TG TG TC TG TA
56161 TC * 18 33/36 TC TA TC TC TC TC TC TC TC TC TC TC TC TC TT TC TA TC
85204 TG * 14 26/28 TG TG TG TG TG TG TG TG TG TG TG TC TG AG
121855 TA * 12 22/24 TA TA TA TG TA TA TA TA TA TA TA TT
162405 TG * 11 20/22 TG TG TG TA TG TG TG TG TG TG GG
175028 CT * 11 20/22 CT CC AT CT CT CT CT CT CT CT CT
186898 CT * 15 28/30 CT CT TT CT CT CT CT AT CT CT CT CT CT CT CT
214525 TG * 12 23/24 TG TA TG TG TG TG TG TG TG TG TG TG
233455 CA * 12 22/24 CA CA CC CA CA CA CA TA CA CA CA CA
236175 TG * 10 18/20 TG AG TG TG TG TG TG TG TG TT
275294 GA * 17 31/34 GA GA GC GA AA GA GA GA GA GA GA GA GA GA GT GA GA
-----------------------------------------------------------------------------------------
Total sequence length......................... 287649
Total number of repeats detected.............. 12
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 1 0 0 0 1 5 0 0 2 0 0
15 to 19 0 0 0 1 0 0 0 0 1 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 1 0 1 0 1 5 0 1 3 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 1 TA = 1
0 AG + 1 GA + 3 CT + 1 TC = 5
0 GT + 5 TG + 1 CA + 0 AC = 6
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7293706|gb|AE003515.1|AE003515 Drosophila melanogaster genomic scaffold 142000013386050 section 2 of 54, complete sequence
Position Repeat Coverage Repeat
9661 AT * 10 18/20 AT AT AT AT AT AT AT AT TT GT
9682 TA * 10 18/20 TA TA GA TA AA TA TA TA TA TA
12248 TG * 11 21/22 TG TG TG TG TG TG TG TG TG TA TG
69732 TA * 10 18/20 TA TA TA TA TA TA TA TA TA AG
82215 AC * 12 23/24 AC AC AC AC AC AC TC AC AC AC AC AC
105933 GT * 11 20/22 GT GT GT GT GT GT GT GC GT CT GT
106875 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG GT TG
109112 AT * 10 18/20 AT AC AT AT AT AC AT AT AT AT
111394 AT * 10 19/20 AT AT AT AC AT AT AT AT AT AT
112093 AC * 12 22/24 AC AC AC TC GC AC AC AC AC AC AC AC
122168 AG * 16 30/32 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG GA
122339 CA * 11 20/22 CA CA CA CA CA CA CA CT CA CA CT
133000 TA * 12 22/24 TA TA CA AA TA TA TA TA TA TA TA TA
194954 AT * 10 18/20 AT AT AT AT AT AA AT AC AT AT
265432 AG * 10 18/20 AG AG AG AG AG AG AG AG AG CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 273521
Total number of repeats detected.............. 15
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 3 1 0 2 1 2 1 0 0 0 0
15 to 19 0 0 1 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 3 2 0 2 1 2 1 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 3 TA = 7
2 AG + 0 GA + 0 CT + 0 TC = 2
1 GT + 2 TG + 1 CA + 2 AC = 6
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7293659|gb|AE003514.1|AE003514 Drosophila melanogaster genomic scaffold 142000013386050 section 1 of 54, complete sequence
Position Repeat Coverage Repeat
3048 TG * 14 26/28 TG TG TG TG TG TG TG TG TG TG TG TG TA TT
3124 TA * 11 20/22 TA TA TA TG TA TA TA TA TA TA AA
75037 GT * 10 18/20 GT GT GT GT GC GT GT GT GT GG
86589 GT * 16 29/32 GT GT GT GT GA GT AT GT GT GT GT GT GT GT GT GA
94289 TA * 13 24/26 TA CA TA TA TA TA TA TA TA TA TA TA TC
129238 AC * 10 18/20 AC AT AC AC AC AC AC AC GC AC
144593 GT * 15 28/30 GT GT GT GT GT GT GT GT GT GG GT GT GT GT GG
149732 TG * 16 29/32 TG AA TG TG TG TG TG TG TG TG TG TG TG TG TG TA
167170 AT * 10 18/20 AT AT AT AT AT AT AT AT TT TT
170320 TC * 13 24/26 TC TC TC TC TT TC TC TA TC TC TC TC TC
220793 CT * 11 20/22 CT CG CT CG CT CT CT CT CT CT CT
221093 CT * 13 24/26 CT CT CT CT CT CC CT CT CT CC CT CT CT
222635 TG * 12 23/24 TG TG TG TG TG TG TG TG TG GG TG TG
244550 TG * 10 18/20 TG TG TG TG GG TG TG GG TG TG
257299 TA * 10 19/20 TA TA TA TA TA TA TA TA TA TC
-----------------------------------------------------------------------------------------
Total sequence length......................... 274668
Total number of repeats detected.............. 15
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 3 0 0 1 0 3 1 1 2 0 0
15 to 19 0 0 0 0 0 0 1 2 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 3 0 0 1 0 4 3 1 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 3 TA = 4
0 AG + 0 GA + 2 CT + 1 TC = 3
3 GT + 4 TG + 0 CA + 1 AC = 8
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289390|gb|AE003204.1|AE003204 Drosophila melanogaster genomic scaffold 142000013385626, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 14074
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289766|gb|AE003242.1|AE003242 Drosophila melanogaster genomic scaffold 142000013385958, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 20950
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7288950|gb|AE002969.1|AE002969 Drosophila melanogaster genomic scaffold 142000013385262, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 19560
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289605|gb|AE002867.1|AE002867 Drosophila melanogaster genomic scaffold 142000013385810, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1179
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289134|gb|AE003115.1|AE003115 Drosophila melanogaster genomic scaffold 142000013385416, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 3101
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7316094|gb|AE002647.1|AE002647 Drosophila melanogaster genomic scaffold 142000013386036, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7296579|gb|AE003599.1|AE003599 Drosophila melanogaster genomic scaffold 142000013386036 section 9 of 9, complete sequence
Position Repeat Coverage Repeat
11183 AT * 13 24/26 AT AT AT AC AT AT AT AT AC AT AT AT AT
11211 AT * 15 27/30 AT AT AT AT AC AT AT AT AT AC AT AT AT AT AC
11760 TA * 11 20/22 TA CA TA TA TA TA CA TA TA TA TA
11783 AT *165 297/330 AT AT AT AT AC AT AT AT AT AC AT AT AT AT AC AT AT AT AT AC AT AT AT AT AC AT AT AT AT AC AT AT AT AT AC AT AT AT AT AC AT AT AT AT AC AT AT AT AT AC AT AT AT AT AC AT AT AT AT AC AT AT AT AT AC AT AT AT AT AC AT AT AT AT AC AT AT AT AT AC AT AT AT AT AC AT AT AT AT AC AT AT AT AT AC AT AT AT AT AC AT AT AT AT AC AT AT AT AT AC AT AT AT AT AC AT AT AT AT AC AT AT AT AT AC AT AT AT AT AC AT AT AT AT AC AT AT AT AT AC AT AT AT AT AC AT AT AT AT AC AT AT AT AT AC AT AT AT AT AC AT AT AT AT AC
12115 TA * 22 40/44 TA TA TA TA CA TA TA TA TA CA TA TA TA TA CA TA TA TA TA CA TA TA
12161 AT * 11 20/22 AT AC AT AT AT AT AC AT AT AT AT
12185 AT * 66 119/132 AT AT AT AT AC AT AT AT AT AC AT AT AT AT AC AT AT AT AT AC AT AT AT AT AC AT AT AT AT AC AT AT AT AT AC AT AT AT AT AC AT AT AT AT AC AT AT AT AT AC AT AT AT AT AC AT AT AT AT AC AT AT AT AT AT TT
12630 AT * 11 20/22 AT AT AT AT AT AT AG AC AT AT AT
19335 AC * 10 18/20 AC AC AC AC AC AC AC AT AC AT
32696 CA * 10 18/20 CA CA CA CA CA CA TA CA CA AA
41480 CA * 10 18/20 CA GA CA CA CA CG CA CA CA CA
46123 AT * 35 63/70 AT AT AT AT AT AT AT AT AC AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GA AT TA AG
46225 AT * 22 40/44 AT AT AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT TC AA
46743 TA * 10 18/20 TA TA TA TG TA TA TA TG TA TA
83772 AT * 10 18/20 AT AT AT AC AT AC AT AT AT AT
94596 CA * 43 78/86 CA AA CA AA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA TC GT AG CA CA
145631 TG * 10 19/20 TG TG TG TG TG TG TG TG TG CG
148403 TG * 11 20/22 TG CG GG TG TG TG TG TG TG TG TG
163453 AT * 10 18/20 AT AT AT AT AT AT AT AT AC TT
186970 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AT CC
198789 TA * 10 18/20 TA TA TG TA TA TT TA TA TA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 242396
Total number of repeats detected.............. 21
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 6 3 0 0 1 2 2 0 0 0 0 0
15 to 19 1 0 0 0 0 0 0 0 0 0 0 0
20 to 24 1 1 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 1 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 1 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 2 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 11 4 0 0 1 3 2 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
11 AT + 4 TA = 15
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 2 TG + 3 CA + 1 AC = 6
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7296549|gb|AE003598.1|AE003598 Drosophila melanogaster genomic scaffold 142000013386036 section 8 of 9, complete sequence
Position Repeat Coverage Repeat
4860 AG * 11 20/22 AG AG AG AG AT AG AG CG AG AG AG
6371 GT * 14 26/28 GT GT GT GT GT GT GT GT GT GT GT GT AT GG
49949 CA * 10 18/20 CA CA CA CA CA CC CA GA CA CA
63606 CA * 15 28/30 CA CC CA CA CA CA CA CA CA CA CA CA CA CA CC
66630 CT * 10 18/20 CT CT CT CT CT CT CT CT CT TA
73652 CT * 11 20/22 CT CT CT CT CT CT CT CT CT CT TA
82417 AC * 11 20/22 AC AC GC AC AC AC AC AC AC AC TC
128120 AG * 10 18/20 AG AG AG AG AG AG AG AG AG CT
135126 AG * 10 18/20 AG AG AG AG AG AG AG AG AG CT
153260 CA * 10 18/20 CA CA CA CA CA CA CA CA CA AC
-----------------------------------------------------------------------------------------
Total sequence length......................... 303162
Total number of repeats detected.............. 10
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 0 3 0 1 2 0 1 0 2 0 0
15 to 19 0 0 0 0 0 1 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 0 3 0 1 3 0 1 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 0 TA = 0
3 AG + 0 GA + 2 CT + 0 TC = 5
1 GT + 0 TG + 3 CA + 1 AC = 5
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7296525|gb|AE003597.1|AE003597 Drosophila melanogaster genomic scaffold 142000013386036 section 7 of 9, complete sequence
Position Repeat Coverage Repeat
1503 GT * 10 18/20 GT GT GT GT GT GT GT GC GT GC
11064 CT * 13 24/26 CT GT CT CT CT CT CT CT CT CT CT CT TT
11560 GT * 10 19/20 GT GT GT GT GT CT GT GT GT GT
37951 TA * 11 21/22 TA TA TA TG TA TA TA TA TA TA TA
51146 CA * 11 20/22 CA CA CA CA CG CA CA CG CA CA CA
54081 AT * 13 24/26 AT AT AT AT AT AC AT AT AT AT AT AT AG
59984 TA * 22 40/44 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA NN NN
141255 GT * 13 24/26 GT AT GT CT GT GT GT GT GT GT GT GT GT
145714 TG * 10 18/20 TG TG AT TG TG TG TG TG TG TG
149984 TG * 10 18/20 TG TG TA TG TG TG TG TG TG TT
153266 AG * 13 24/26 AG AT GG AG AG AG AG AG AG AG AG AG AG
177181 TG * 10 18/20 TG TC TG TG TG CG TG TG TG TG
177276 GT * 10 18/20 GT GT GC GT GC GT GT GT GT GT
214258 GA * 11 20/22 GA GA GA GA GA GA GA GC TA GA GA
-----------------------------------------------------------------------------------------
Total sequence length......................... 295566
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 1 1 1 0 1 3 4 0 1 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 1 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 2 1 1 0 1 3 4 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 2 TA = 3
1 AG + 1 GA + 1 CT + 0 TC = 3
4 GT + 3 TG + 1 CA + 0 AC = 8
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7296506|gb|AE003596.1|AE003596 Drosophila melanogaster genomic scaffold 142000013386036 section 6 of 9, complete sequence
Position Repeat Coverage Repeat
1694 AT * 10 18/20 AT TT AT AT AT AT AT AT AG AT
47634 CT * 10 18/20 CT TT CT TT CT CT CT CT CT CT
57274 TA * 22 41/44 TA TA TA TA TA AA TA TA TA TA TA TC TA TA TA TA TA TA TA TC TA TA
57318 AT * 17 31/34 AT AT AT AT AT AT CT AT AT AT AT AT CT AT AT AC AT
197758 AT * 13 24/26 AT AT AT AT AT AT GT AT AT AT AT AT AA
248373 AT * 10 19/20 AT AT AT AT AT AT GT AT AT AT
248858 CA * 15 27/30 CA CA CA CA CA CA CA CA CA CA CA CA CA CC AT
261770 GT * 12 22/24 GT GA GT GT GT GT GT GT GT GT GT GG
293898 AC * 10 18/20 AC AC AC AC AC AC AC AC TG AC
-----------------------------------------------------------------------------------------
Total sequence length......................... 318817
Total number of repeats detected.............. 9
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 0 0 0 1 0 0 1 0 1 0 0
15 to 19 1 0 0 0 0 1 0 0 0 0 0 0
20 to 24 0 1 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 1 0 0 1 1 0 1 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 1 TA = 5
0 AG + 0 GA + 1 CT + 0 TC = 1
1 GT + 0 TG + 1 CA + 1 AC = 3
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7296463|gb|AE003595.1|AE003595 Drosophila melanogaster genomic scaffold 142000013386036 section 5 of 9, complete sequence
Position Repeat Coverage Repeat
89225 GT * 11 20/22 GT GT GG GT GT GT GT GT GT GT AT
164172 TA * 10 18/20 TA TC TA TG TA TA TA TA TA TA
174182 GT * 10 18/20 GT GT GT GT GG GT GT GT GT GC
206307 TA * 10 18/20 TA TA TA AT TA TA TA TA TA TA
206936 AT * 10 18/20 AT AT AT AT AC AT AT AT AT AC
220731 AT * 11 20/22 AT AT AT GT AT AT AT AT GT AT AT
237685 AT * 10 18/20 AT AT AT AT AT AT AT AT GT AC
244509 TG * 10 18/20 TG TG TG TG TG TG CG TG TG AG
252059 AT * 13 24/26 AT AT AT AC AT AT AC AT AT AT AT AT AT
259584 CA * 10 18/20 CA CA CA CG CA CT CA CA CA CA
262942 CT * 11 20/22 CT CA CT CA CT CT CT CT CT CT CT
264182 TG * 10 18/20 TG CG TG TG TG TG TG TG CG TG
286062 TG * 14 26/28 TG TG TG TG TG TG TG TG TG TG TG TG TC AG
291453 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CA TC
-----------------------------------------------------------------------------------------
Total sequence length......................... 294257
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 2 0 0 0 2 3 2 0 1 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 2 0 0 0 2 3 2 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 2 TA = 6
0 AG + 0 GA + 1 CT + 0 TC = 1
2 GT + 3 TG + 2 CA + 0 AC = 7
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7296405|gb|AE003594.1|AE003594 Drosophila melanogaster genomic scaffold 142000013386036 section 4 of 9, complete sequence
Position Repeat Coverage Repeat
1117 TA * 10 19/20 TA TA TA CA TA TA TA TA TA TA
5024 AT * 13 24/26 AT AT AT AT AT AT AT AT TT AT AG AT AT
33343 GT * 10 18/20 GT GT GT GT GT GT GT CT GT GC
42784 CA * 11 20/22 CA CA TA CA CA CA CA CA CA CA TA
52637 GT * 11 20/22 GT GT GC GT GT GT GT GA GT GT GT
56401 TC * 10 18/20 TC TC TC AC AC TC TC TC TC TC
59629 TA * 16 29/32 TA TA TA TA TA TA TA TA TG TA TA TA TA CA TA CA
71511 TA * 10 18/20 TA TA TA TA TA TA TA CG TA TA
85907 TA * 10 18/20 TA TA TG TA TA TA TA TA TA TT
107146 TA * 12 22/24 TA TT TA TG TA TA TA TA TA TA TA TA
107359 CT * 11 20/22 CT CT CT AT CG CT CT CT CT CT CT
128269 AC * 12 22/24 AC AC AC AC AC AC AC AC AC TC AC TC
197064 GT * 17 31/34 GT GT GT GT GT GT GT GT GT GT GT GT GT AT GT GG GC
201363 AT * 10 18/20 AT CT AT AT AT AT AT AT AT AN
201651 AG * 21 38/42 AG AG AA AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG CG GA
201838 CT * 15 28/30 CT CT CT CT CT CT CC CT CT CT CT CT CT CA CT
206707 AT * 10 18/20 AT AT AT AT AT AT AT AT CT GT
210421 TC * 10 18/20 TC GC TC TC AC TC TC TC TC TC
223476 CA * 71 129/142 CA AC CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CC CC CC TG CA CC AA AA AG GA
235883 AT * 10 18/20 AT AT GT AT AT AT GT AT AT AT
287221 TA * 10 18/20 TA CA TT TA TA TA TA TA TA TA
298755 AT * 12 22/24 AT AT AT TT AT AT TT AT AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 305516
Total number of repeats detected.............. 22
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 5 0 0 1 1 0 2 2 1 0 0
15 to 19 0 1 0 0 0 0 0 1 0 1 0 0
20 to 24 0 0 1 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 1 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 6 1 0 1 2 0 3 2 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 6 TA = 11
1 AG + 0 GA + 2 CT + 2 TC = 5
3 GT + 0 TG + 2 CA + 1 AC = 6
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7296371|gb|AE003593.1|AE003593 Drosophila melanogaster genomic scaffold 142000013386036 section 3 of 9, complete sequence
Position Repeat Coverage Repeat
41924 GT * 10 19/20 GT GT GT GT GT GT GT GT TT GT
55684 CA * 10 18/20 CA CA AA CA CA CA CA CA CA TA
59385 TG * 11 20/22 TG TG TG TG CC TG TG TG TG TG TG
90475 AT * 14 26/28 AT AT AT AT TC AT AT AT AT AT AT AT AT AT
91099 CA * 11 21/22 CA AA CA CA CA CA CA CA CA CA CA
95319 TC * 20 36/40 TC TC TC AT TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC GT
96668 TC * 10 18/20 TC TT TC TC TC TT TC TC TC TC
96984 TC * 13 24/26 TC TC TC TC GC TC TC TC TC TT TC TC TC
166136 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA CA GG
188857 TG * 10 18/20 TG TG AG TG TG TG TG TG TG GG
199130 TG * 11 21/22 TG TG TG TG AG TG TG TG TG TG TG
212163 GT * 10 18/20 GT GC GT GT GT GT GT AT GT GT
222464 AT * 13 24/26 AT AT AG AT AT AT GT AT AT AT AT AT AT
222492 AT * 17 31/34 AT AT AT AT AT AT AT GT AT AT AT GT AT AT AT GT AT
231339 GT * 10 18/20 GT GT GT GT GT GT TT TT GT GT
239527 CT * 12 22/24 CT CT CT CT CT CC CT CT CT TT CT CT
250400 CT * 13 25/26 CT CT CT CT CT CT CT CT CT GT CT CT CT
257790 TG * 10 18/20 TG TG TG TG TG TG AG CG TG TG
272346 CA * 12 22/24 CA CA CA CA CA CA CG CA CA CA CT CA
299948 AC * 17 31/34 AC GC GC AC AC AC AC AC AC AC AC AC AC AC AC AC AA
306954 AC * 10 18/20 AC AC AC GC AC AC AC AT AC AC
-----------------------------------------------------------------------------------------
Total sequence length......................... 313115
Total number of repeats detected.............. 21
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 0 0 0 1 4 4 3 2 2 0 0
15 to 19 1 0 0 0 1 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 1 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 0 0 0 2 4 4 3 3 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 0 TA = 3
0 AG + 0 GA + 2 CT + 3 TC = 5
3 GT + 4 TG + 4 CA + 2 AC = 13
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7296338|gb|AE003592.1|AE003592 Drosophila melanogaster genomic scaffold 142000013386036 section 2 of 9, complete sequence
Position Repeat Coverage Repeat
1837 GA * 10 19/20 GA GA GA GA GA GA GA GA AA GA
63760 GT * 10 18/20 GT GA GT GT GA GT GT GT GT GT
66825 CT * 10 18/20 CT CA GT CT CT CT CT CT CT CT
66964 CA * 10 19/20 CA CA CA CA CA CA CA CA CA CC
83201 TA * 10 18/20 TA TA TA TA TA TA TG TA TA TT
106792 AT * 10 18/20 AT AT AT AT GG AT AT AT AT AT
111395 TC * 13 24/26 TC TC TC TC TC TC TC TC TC TT TC GC TC
119455 AT * 11 20/22 AT AT AG AA AT AT AT AT AT AT AT
119838 AT * 11 20/22 AT AT AT AC AT AT AT AG AT AT AT
177728 TA * 15 28/30 TA TA TA TA TA TA TA TA TA TA TA TA TA TA NN
221356 AG * 10 18/20 AG AG AG AG AG AG AG AG TG AA
226685 TA * 13 24/26 TA TA TA CA TG TA TA TA TA TA TA TA TA
233350 TG * 11 20/22 TG TG TG TG TG TA GG TG TG TG TG
237610 GT * 13 24/26 GT GA GT AT GT GT GT GT GT GT GT GT GT
243396 TG * 10 18/20 TG TG GG TG TG TG TG TG TG TA
254780 TG * 10 18/20 TG TG TA TG TG AG TG TG TG TG
257541 TG * 14 26/28 TG TG TG TG TG TG TG TT TG TG TG AG TG TG
270086 CA * 11 20/22 CA CA CA CA CA AA CA CA AA CA CA
279405 AT * 10 18/20 AT AT AT AA AT AT AT AA AT AT
292385 CT * 10 18/20 CT CA CT CT CT CT CT CT CA CT
319597 AG * 12 22/24 AG CG AG AG AG AA AG AG AG AG AG AG
321315 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT TT GC
-----------------------------------------------------------------------------------------
Total sequence length......................... 322667
Total number of repeats detected.............. 22
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 2 2 1 0 2 4 3 1 2 0 0
15 to 19 0 1 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 3 2 1 0 2 4 3 1 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 3 TA = 7
2 AG + 1 GA + 2 CT + 1 TC = 6
3 GT + 4 TG + 2 CA + 0 AC = 9
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7296281|gb|AE003591.1|AE003591 Drosophila melanogaster genomic scaffold 142000013386036 section 1 of 9, complete sequence
Position Repeat Coverage Repeat
18921 GA * 15 27/30 GA GA GA CG GA GA GA GA GA GA GA GA GA GA GG
19172 TA * 10 18/20 TA TA TA CA TA TA TA TG TA TA
34633 CT * 12 22/24 CT CT CT CT CT CT CT CT CT CT CT TC
68168 TC * 12 22/24 TC TT TC CC TC TC TC TC TC TC TC TC
112479 CT * 17 32/34 CT CT CT CT CT CT CT CT CT CT CG CT CT CT CT CT TT
117664 TA * 10 18/20 TA TA TA TA TA TA TA TA TC TG
142908 TA * 10 18/20 TA TA TA TA TT TA TA TT TA TA
155224 AT * 10 18/20 AT AT TA AT AT AT AT AT AT AT
166366 TG * 10 18/20 TG AG TC TG TG TG TG TG TG TG
186492 CT * 10 18/20 CT CC CC CT CT CT CT CT CT CT
248992 AT * 12 22/24 AT AT AT AT AT AA AT AT AC AT AT AT
289872 AG * 10 18/20 AG GG AG AG AG AG AG CG AG AG
-----------------------------------------------------------------------------------------
Total sequence length......................... 297877
Total number of repeats detected.............. 12
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 3 1 0 0 0 1 0 1 2 0 0
15 to 19 0 0 0 1 0 0 0 0 0 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 3 1 1 0 0 1 0 1 3 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 3 TA = 5
1 AG + 1 GA + 3 CT + 1 TC = 6
0 GT + 1 TG + 0 CA + 0 AC = 1
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289763|gb|AE002698.1|AE002698 Drosophila melanogaster genomic scaffold 142000013385955, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 3074
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289744|gb|AE002786.1|AE002786 Drosophila melanogaster genomic scaffold 142000013385942, complete sequence
Position Repeat Coverage Repeat
29699 AT * 10 19/20 AT AT AT AT AT GT AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 46468
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 0 0 0 0 0 0 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 0 TA = 1
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 0 TG + 0 CA + 0 AC = 0
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289859|gb|AE002656.1|AE002656 Drosophila melanogaster genomic scaffold 142000013386032, complete sequence
Position Repeat Coverage Repeat
177890 AT * 11 21/22 AT GT AT AT AT AT AT AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 192318
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 0 0 0 0 0 0 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 0 TA = 1
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 0 TG + 0 CA + 0 AC = 0
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289180|gb|AE002893.1|AE002893 Drosophila melanogaster genomic scaffold 142000013385459, complete sequence
Position Repeat Coverage Repeat
6950 AT * 13 24/26 AT AT AA AT AT AT AT AT GT AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 12718
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 0 0 0 0 0 0 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 0 TA = 1
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 0 TG + 0 CA + 0 AC = 0
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289879|gb|AE002612.1|AE002612 Drosophila melanogaster genomic scaffold 142000013386048, complete sequence
Position Repeat Coverage Repeat
16174 AT * 13 24/26 AT AT AT AT GG AT AT AT AT AT AT AT AT
61703 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
61727 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
61751 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
61775 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
61799 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
61823 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 62039
Total number of repeats detected.............. 7
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 6 0 0 0 0 0 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 6 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 6 TA = 7
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 0 TG + 0 CA + 0 AC = 0
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7288924|gb|AE002622.1|AE002622 Drosophila melanogaster genomic scaffold 142000013385237, complete sequence
Position Repeat Coverage Repeat
16842 TG * 10 18/20 TG TA TG TG TG TG TG TG TG TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 19569
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 0 0 0 0 0 1 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 0 0 0 0 0 1 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 0 TA = 0
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 1 TG + 0 CA + 0 AC = 1
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7288927|gb|AE002700.1|AE002700 Drosophila melanogaster genomic scaffold 142000013385240, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 27887
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289063|gb|AE002771.1|AE002771 Drosophila melanogaster genomic scaffold 142000013385352, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 12661
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289072|gb|AE002945.1|AE002945 Drosophila melanogaster genomic scaffold 142000013385361, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 24781
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289452|gb|AE002985.1|AE002985 Drosophila melanogaster genomic scaffold 142000013385679, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 14450
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289817|gb|AE003107.1|AE003107 Drosophila melanogaster genomic scaffold 142000013386005, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 3855
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289498|gb|AE003116.1|AE003116 Drosophila melanogaster genomic scaffold 142000013385716, complete sequence
Position Repeat Coverage Repeat
34143 TA * 10 18/20 TA TA TA TA TA TA TA TA TA AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 47681
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 1 0 0 0 0 0 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 1 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 1 TA = 1
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 0 TG + 0 CA + 0 AC = 0
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289428|gb|AE003123.1|AE003123 Drosophila melanogaster genomic scaffold 142000013385660, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1928
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289557|gb|AE003131.1|AE003131 Drosophila melanogaster genomic scaffold 142000013385771, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 18252
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289011|gb|AE003041.1|AE003041 Drosophila melanogaster genomic scaffold 142000013385314, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 20379
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289447|gb|AE002665.1|AE002665 Drosophila melanogaster genomic scaffold 142000013385677, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 111329
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289124|gb|AE002673.1|AE002673 Drosophila melanogaster genomic scaffold 142000013385408, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 11578
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7288933|gb|AE002585.1|AE002585 Drosophila melanogaster genomic scaffold 142000013385245, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 3866
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7288940|gb|AE002772.1|AE002772 Drosophila melanogaster genomic scaffold 142000013385252, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 17099
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289795|gb|AE003009.1|AE003009 Drosophila melanogaster genomic scaffold 142000013385983, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 5331
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289101|gb|AE003147.1|AE003147 Drosophila melanogaster genomic scaffold 142000013385388, complete sequence
Position Repeat Coverage Repeat
7476 AT * 10 19/20 AT AT AT AT AT AT AT AT AT AA
7582 AT * 10 18/20 AT AT AT AA TT AT AT AT AT AT
7629 AT * 11 20/22 AT AT AT AT AA TT AT AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 12069
Total number of repeats detected.............. 3
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 0 0 0 0 0 0 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 0 TA = 3
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 0 TG + 0 CA + 0 AC = 0
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7288946|gb|AE003235.1|AE003235 Drosophila melanogaster genomic scaffold 142000013385258, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 15690
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289104|gb|AE003139.1|AE003139 Drosophila melanogaster genomic scaffold 142000013385390, complete sequence
Position Repeat Coverage Repeat
1787 TA * 11 20/22 TA TA TA TA TA TA AA TA TA TA TT
16988 TA * 13 24/26 TA TA TA AA AA TA TA TA TA TA TA TA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 53962
Total number of repeats detected.............. 2
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 2 0 0 0 0 0 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 2 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 2 TA = 2
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 0 TG + 0 CA + 0 AC = 0
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Di-nucleotide repeats in Drosophila melanogaster Chromosome-Arm-3L Genomic Scaffolds
Minimum di-nucleotide repeating units = 10 (allowing maximum 10% mismatch)
Total 2184 repeats covering 48039 / 52536 base pairs
Length distribution of all di-nucleotide repeats
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
no. of repeat-units 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 >=50
total repeats 786 524 304 221 50 97 65 55 26 4 14 12 9 6 0 1 0 0 1 0 0 0 0 0 0 2 1 0 1 1 0 0 0 1 0 0 0 0 0 0 3
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Length distribution of all di-nucleotide repeats in range
no. of repeat-units 10-14 15-19 20-24 25-29 30-34 35-39 40-44 45-49 >=50
total repeats--> 1885 247 41 2 0 5 1 0 3
AT 317 30 2 0 0 1 0 0 2
TA 253 34 6 0 0 0 0 0 0
AG 77 18 4 0 0 0 0 0 0
GA 47 7 1 0 0 0 0 0 0
AC 227 16 4 0 0 1 0 0 0
CA 283 45 7 1 0 1 1 0 1
TG 319 41 7 1 0 0 0 0 0
GT 235 31 5 0 0 1 0 0 0
TC 42 8 4 0 0 1 0 0 0
CT 85 17 1 0 0 0 0 0 0
GC 0 0 0 0 0 0 0 0 0
CG 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------
Sequence-wise distribution of di-nucleotide repeats
Sequence Sequence-length total repeats detected
gi|7316100|gb|AE0025 0 bp 0
gi|7292550|gb|AE0034 175489 bp 29
gi|7292521|gb|AE0034 301682 bp 25
gi|7292481|gb|AE0034 319765 bp 30
gi|7292415|gb|AE0034 310450 bp 22
gi|7292381|gb|AE0034 309883 bp 36
gi|7292360|gb|AE0034 317218 bp 25
gi|7292303|gb|AE0034 304734 bp 18
gi|7292275|gb|AE0034 306945 bp 30
gi|7292236|gb|AE0034 304231 bp 25
gi|7292198|gb|AE0034 306364 bp 13
gi|7292168|gb|AE0034 304106 bp 24
gi|7292093|gb|AE0034 303191 bp 10
gi|7292041|gb|AE0034 301109 bp 19
gi|7292017|gb|AE0034 302423 bp 55
gi|7291982|gb|AE0034 301868 bp 22
gi|7291959|gb|AE0034 310120 bp 35
gi|7291904|gb|AE0034 298644 bp 8
gi|7316103|gb|AE0026 0 bp 0
gi|7295475|gb|AE0035 104808 bp 18
gi|7295459|gb|AE0035 286716 bp 39
gi|7295423|gb|AE0035 286782 bp 52
gi|7295378|gb|AE0035 301840 bp 33
gi|7295346|gb|AE0035 277325 bp 13
gi|7295332|gb|AE0035 249584 bp 23
gi|7295317|gb|AE0035 274307 bp 42
gi|7295278|gb|AE0035 285495 bp 48
gi|7295229|gb|AE0035 269454 bp 36
gi|7295193|gb|AE0035 273744 bp 16
gi|7295172|gb|AE0035 286418 bp 34
gi|7295117|gb|AE0035 281146 bp 23
gi|7295064|gb|AE0035 281936 bp 33
gi|7295028|gb|AE0035 285729 bp 14
gi|7294982|gb|AE0035 287145 bp 52
gi|7294927|gb|AE0035 286784 bp 49
gi|7294877|gb|AE0035 285978 bp 32
gi|7294844|gb|AE0035 298675 bp 52
gi|7294827|gb|AE0035 300477 bp 43
gi|7294819|gb|AE0035 244249 bp 35
gi|7294792|gb|AE0035 281396 bp 76
gi|7294749|gb|AE0035 281602 bp 30
gi|7294729|gb|AE0035 281893 bp 46
gi|7294680|gb|AE0035 281869 bp 24
gi|7294631|gb|AE0035 284386 bp 14
gi|7294592|gb|AE0035 289887 bp 36
gi|7294556|gb|AE0035 265547 bp 14
gi|7294528|gb|AE0035 297385 bp 35
gi|7294496|gb|AE0035 271729 bp 24
gi|7294470|gb|AE0035 303715 bp 20
gi|7294453|gb|AE0035 280570 bp 49
gi|7294412|gb|AE0035 341639 bp 47
gi|7294397|gb|AE0035 278748 bp 12
gi|7294375|gb|AE0035 280061 bp 8
gi|7294349|gb|AE0035 275076 bp 25
gi|7294302|gb|AE0035 295377 bp 15
gi|7294291|gb|AE0035 274277 bp 21
gi|7294232|gb|AE0035 279136 bp 20
gi|7294198|gb|AE0035 252224 bp 19
gi|7294145|gb|AE0035 283712 bp 33
gi|7294090|gb|AE0035 279679 bp 19
gi|7294043|gb|AE0035 280887 bp 21
gi|7294009|gb|AE0035 291880 bp 46
gi|7293975|gb|AE0035 335868 bp 57
gi|7293946|gb|AE0035 283337 bp 36
gi|7293918|gb|AE0035 290837 bp 24
gi|7293901|gb|AE0035 271237 bp 16
gi|7293883|gb|AE0035 292222 bp 12
gi|7293842|gb|AE0035 276243 bp 20
gi|7293817|gb|AE0035 280289 bp 21
gi|7293794|gb|AE0035 257672 bp 27
gi|7293747|gb|AE0035 287649 bp 12
gi|7293706|gb|AE0035 273521 bp 15
gi|7293659|gb|AE0035 274668 bp 15
gi|7289390|gb|AE0032 14074 bp 0
gi|7289766|gb|AE0032 20950 bp 0
gi|7288950|gb|AE0029 19560 bp 0
gi|7289605|gb|AE0028 1179 bp 0
gi|7289134|gb|AE0031 3101 bp 0
gi|7316094|gb|AE0026 0 bp 0
gi|7296579|gb|AE0035 242396 bp 21
gi|7296549|gb|AE0035 303162 bp 10
gi|7296525|gb|AE0035 295566 bp 14
gi|7296506|gb|AE0035 318817 bp 9
gi|7296463|gb|AE0035 294257 bp 14
gi|7296405|gb|AE0035 305516 bp 22
gi|7296371|gb|AE0035 313115 bp 21
gi|7296338|gb|AE0035 322667 bp 22
gi|7296281|gb|AE0035 297877 bp 12
gi|7289763|gb|AE0026 3074 bp 0
gi|7289744|gb|AE0027 46468 bp 1
gi|7289859|gb|AE0026 192318 bp 1
gi|7289180|gb|AE0028 12718 bp 1
gi|7289879|gb|AE0026 62039 bp 7
gi|7288924|gb|AE0026 19569 bp 1
gi|7288927|gb|AE0027 27887 bp 0
gi|7289063|gb|AE0027 12661 bp 0
gi|7289072|gb|AE0029 24781 bp 0
gi|7289452|gb|AE0029 14450 bp 0
gi|7289817|gb|AE0031 3855 bp 0
gi|7289498|gb|AE0031 47681 bp 1
gi|7289428|gb|AE0031 1928 bp 0
gi|7289557|gb|AE0031 18252 bp 0
gi|7289011|gb|AE0030 20379 bp 0
gi|7289447|gb|AE0026 111329 bp 0
gi|7289124|gb|AE0026 11578 bp 0
gi|7288933|gb|AE0025 3866 bp 0
gi|7288940|gb|AE0027 17099 bp 0
gi|7289795|gb|AE0030 5331 bp 0
gi|7289101|gb|AE0031 12069 bp 3
gi|7288946|gb|AE0032 15690 bp 0
gi|7289104|gb|AE0031 53962 bp 2
--------------------------------------------------------------------------------------------------------
Total 23674253 bp 2184
--------------------------------------------------------------------------------------------------------
-------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
352 AT + 293 TA = 645
99 AG + 55 GA + 103 CT + 55 TC = 312
272 GT + 368 TG + 339 CA + 248 AC = 1227
0 GC + 0 CG = 0
-------------------------------------------------------------------------------
-------------------------------------------------------------------------------
Frequency distribution of di-nucleotides repeated for 20 times or more
5 AT + 6 TA = 11
4 AG + 1 GA + 1 CT + 5 TC = 11
6 GT + 8 TG + 11 CA + 5 AC = 30
0 GC + 0 CG = 0
-------------------------------------------------------------------------------
Total repeats >= 40 bp = 52
-------------------------------------------------------------------------------
© Division of Biochemical Sciences, National Chemical Laboratory, Pune 411008, INDIA