Tri-Nucleotide Repeats in Genomic Sequences
Tri-Nucleotide Repeats in
Drosophila melanogaster Chromosome-Arm-2R Genomic Scaffolds
Genomic sequence
gi|7289019|gb|AE002937.1|AE002937 Drosophila melanogaster genomic scaffold 142000013385320, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 3612
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289079|gb|AE003017.1|AE003017 Drosophila melanogaster genomic scaffold 142000013385367, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 19141
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289475|gb|AE003048.1|AE003048 Drosophila melanogaster genomic scaffold 142000013385699, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 29176
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289453|gb|AE003279.1|AE003279 Drosophila melanogaster genomic scaffold 142000013385680, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 7951
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289112|gb|AE003322.1|AE003322 Drosophila melanogaster genomic scaffold 142000013385396, complete sequence
Position Repeat Coverage Repeat
42513 GAA * 7 19/21 GAA GAA GAG GAA GAA GAT GAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 43718
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 1 GAA + 0 CTT + 0 TTC + 0 TCT = 1
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 0
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7289300|gb|AE002594.1|AE002594 Drosophila melanogaster genomic scaffold 142000013385553, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 11918
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289520|gb|AE002621.1|AE002621 Drosophila melanogaster genomic scaffold 142000013385737, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 2655
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289039|gb|AE002630.1|AE002630 Drosophila melanogaster genomic scaffold 142000013385333, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 12312
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7288934|gb|AE002639.1|AE002639 Drosophila melanogaster genomic scaffold 142000013385246, complete sequence
Position Repeat Coverage Repeat
2188 ATA * 18 49/54 ATA ATA ATA ACA ATA ATA ATA ATA ATT ATG ATA ATA ATA TTA ATA ATA ATT ATA
-----------------------------------------------------------------------------------------
Total sequence length......................... 13170
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 1 0 0 0 1 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 0
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7289090|gb|AE002666.1|AE002666 Drosophila melanogaster genomic scaffold 142000013385377, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 24153
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7288943|gb|AE002691.1|AE002691 Drosophila melanogaster genomic scaffold 142000013385255, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 32417
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7288917|gb|AE002726.1|AE002726 Drosophila melanogaster genomic scaffold 142000013385230, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1893
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289853|gb|AE002751.1|AE002751 Drosophila melanogaster genomic scaffold 142000013386031, complete sequence
Position Repeat Coverage Repeat
847 TAA * 7 19/21 TAA TAA TAA TAA TAA TAA GTA
-----------------------------------------------------------------------------------------
Total sequence length......................... 107231
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 0
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7289862|gb|AE002760.1|AE002760 Drosophila melanogaster genomic scaffold 142000013386034, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 62674
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289517|gb|AE002761.1|AE002761 Drosophila melanogaster genomic scaffold 142000013385734, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 4416
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289299|gb|AE002770.1|AE002770 Drosophila melanogaster genomic scaffold 142000013385552, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 32269
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289417|gb|AE002806.1|AE002806 Drosophila melanogaster genomic scaffold 142000013385651, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 3603
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289767|gb|AE002892.1|AE002892 Drosophila melanogaster genomic scaffold 142000013385959, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 16864
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7288929|gb|AE002919.1|AE002919 Drosophila melanogaster genomic scaffold 142000013385241, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 3000
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289383|gb|AE002935.1|AE002935 Drosophila melanogaster genomic scaffold 142000013385620, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 21261
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7288949|gb|AE002944.1|AE002944 Drosophila melanogaster genomic scaffold 142000013385261, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1824
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7288953|gb|AE002952.1|AE002952 Drosophila melanogaster genomic scaffold 142000013385263, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 14708
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289359|gb|AE002960.1|AE002960 Drosophila melanogaster genomic scaffold 142000013385601, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 19947
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289183|gb|AE002968.1|AE002968 Drosophila melanogaster genomic scaffold 142000013385462, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 3372
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289437|gb|AE002976.1|AE002976 Drosophila melanogaster genomic scaffold 142000013385668, complete sequence
Position Repeat Coverage Repeat
39243 ATA * 7 19/21 ATA ATA ATA ATA ATA ATA TTT
-----------------------------------------------------------------------------------------
Total sequence length......................... 43487
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 0
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7289322|gb|AE002980.1|AE002980 Drosophila melanogaster genomic scaffold 142000013385568, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 19750
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289200|gb|AE002984.1|AE002984 Drosophila melanogaster genomic scaffold 142000013385479, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 26448
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289372|gb|AE002992.1|AE002992 Drosophila melanogaster genomic scaffold 142000013385609, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 13643
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289348|gb|AE003000.1|AE003000 Drosophila melanogaster genomic scaffold 142000013385592, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 17194
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289338|gb|AE003008.1|AE003008 Drosophila melanogaster genomic scaffold 142000013385583, complete sequence
Position Repeat Coverage Repeat
16614 TAT * 7 19/21 TAT TAT AAT AAT TAT TAT TAT
-----------------------------------------------------------------------------------------
Total sequence length......................... 26058
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 0
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7289553|gb|AE003016.1|AE003016 Drosophila melanogaster genomic scaffold 142000013385767, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1073
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7288979|gb|AE003024.1|AE003024 Drosophila melanogaster genomic scaffold 142000013385289, complete sequence
Position Repeat Coverage Repeat
21958 TAA * 10 27/30 TAA TAA TAA TAT TAA TAA TAA AAA TAA AAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 59055
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
TAA 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 0
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7289342|gb|AE003032.1|AE003032 Drosophila melanogaster genomic scaffold 142000013385587, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 29994
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289208|gb|AE003035.1|AE003035 Drosophila melanogaster genomic scaffold 142000013385487, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1546
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289130|gb|AE003040.1|AE003040 Drosophila melanogaster genomic scaffold 142000013385414, complete sequence
Position Repeat Coverage Repeat
14515 TAT * 7 19/21 TAT CAT TAT TAA TAT TAT TAT
37743 ATT * 8 23/24 ATT ATT ATT ATT ATT ATT ATT ATA
-----------------------------------------------------------------------------------------
Total sequence length......................... 55603
Total number of repeats detected.............. 2
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 1 ATT + 0 TTA + 1 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 0
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7289411|gb|AE002589.1|AE002589 Drosophila melanogaster genomic scaffold 142000013385645, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1058
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289416|gb|AE002607.1|AE002607 Drosophila melanogaster genomic scaffold 142000013385650, complete sequence
Position Repeat Coverage Repeat
257 AAT * 12 33/36 AAT AAT AAT AAT AAC AAT CAT AAT AAT AAT ACT AAT
-----------------------------------------------------------------------------------------
Total sequence length......................... 1239
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 0
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7289156|gb|AE002648.1|AE002648 Drosophila melanogaster genomic scaffold 142000013385436, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 4403
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289408|gb|AE002686.1|AE002686 Drosophila melanogaster genomic scaffold 142000013385643, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1527
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289468|gb|AE003001.1|AE003001 Drosophila melanogaster genomic scaffold 142000013385692, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1019
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289446|gb|AE003056.1|AE003056 Drosophila melanogaster genomic scaffold 142000013385676, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 22669
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289145|gb|AE003064.1|AE003064 Drosophila melanogaster genomic scaffold 142000013385425, complete sequence
Position Repeat Coverage Repeat
16026 ATA * 7 19/21 ATA AAA ATA ATA ATA ATA AAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 22016
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 0
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7289388|gb|AE003195.1|AE003195 Drosophila melanogaster genomic scaffold 142000013385624, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1511
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289263|gb|AE002709.1|AE002709 Drosophila melanogaster genomic scaffold 142000013385535, complete sequence
Position Repeat Coverage Repeat
13218 TTA * 7 20/21 TTA TTA TTA TTA TTA TAA TTA
-----------------------------------------------------------------------------------------
Total sequence length......................... 40796
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 0
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7289785|gb|AE003073.1|AE003073 Drosophila melanogaster genomic scaffold 142000013385973, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 3738
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289275|gb|AE002640.1|AE002640 Drosophila melanogaster genomic scaffold 142000013385546, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 2000
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289053|gb|AE002788.1|AE002788 Drosophila melanogaster genomic scaffold 142000013385347, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 19182
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289057|gb|AE003081.1|AE003081 Drosophila melanogaster genomic scaffold 142000013385349, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 12708
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289223|gb|AE003090.1|AE003090 Drosophila melanogaster genomic scaffold 142000013385502, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 38153
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7316105|gb|AE002769.1|AE002769 Drosophila melanogaster genomic scaffold 142000013386052, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7302256|gb|AE003788.1|AE003788 Drosophila melanogaster genomic scaffold 142000013386052 section 5 of 5, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 128817
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7302239|gb|AE003787.1|AE003787 Drosophila melanogaster genomic scaffold 142000013386052 section 4 of 5, complete sequence
Position Repeat Coverage Repeat
19473 ATT * 10 27/30 ATT ATT TTT ATT ATT ATT ATT ATT ATA ATG
50752 ATA * 12 33/36 ATA ATT ATA ATA ATA ATA ATT ATA ATA ATA ATA CTA
182283 TAT * 7 19/21 TAT TAT TAT TAT TAT TAT CAG
205052 TAA * 7 19/21 TAA TAA TAA TAA TTA TAA TAT
209245 ATT * 7 20/21 ATT TTT ATT ATT ATT ATT ATT
217948 TTA * 7 19/21 TTA TTA TTA TTA TTA ATA ATA
254817 AGT * 7 19/21 AGT AGT AGT AGT ATG AGT AGT
-----------------------------------------------------------------------------------------
Total sequence length......................... 307228
Total number of repeats detected.............. 7
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 1 0 1 0 0 0 0 0 0 0 0 0 0
ATT 2 1 1 0 0 0 0 0 0 0 0 0 0
AGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 1 TAA + 2 ATT + 1 TTA + 1 TAT = 6
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
1 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 0
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7302231|gb|AE003786.1|AE003786 Drosophila melanogaster genomic scaffold 142000013386052 section 3 of 5, complete sequence
Position Repeat Coverage Repeat
18174 GAA * 7 19/21 GAA GAA GAG GAA GAA GAT GAA
45114 CCG * 7 19/21 CCG CCG CCG CCG CAG CCT CCG
100085 ATA * 8 22/24 ATA ATA ATA ATA ATA ATA ATA AAT
272138 CTT * 7 19/21 CTT CAT CTT CTT CCT CTT CTT
282105 TAT * 7 19/21 TAT TAT TAT TAT TAT TAT ATT
-----------------------------------------------------------------------------------------
Total sequence length......................... 316735
Total number of repeats detected.............. 5
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 2
0 AAG + 0 AGA + 1 GAA + 1 CTT + 0 TTC + 0 TCT = 2
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 0
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 1 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7302205|gb|AE003785.1|AE003785 Drosophila melanogaster genomic scaffold 142000013386052 section 2 of 5, complete sequence
Position Repeat Coverage Repeat
54955 CTG * 7 19/21 CTG CCG CTG TTG CTG CTG CTG
97790 TGC * 7 19/21 TGC TCT TGC TGC TGC TGC TGC
163682 TTA * 12 33/36 TTA CTA TTA TTA TTA TTA CTA TTA TTA CTA TTA TTA
183790 TAG * 7 19/21 TAG TAG TAG TAG TAG TTC TAG
266128 ATT * 7 19/21 ATT ATT ATT ATT ATT ATT GTA
-----------------------------------------------------------------------------------------
Total sequence length......................... 296279
Total number of repeats detected.............. 5
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
TAG 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 1 ATT + 1 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 1 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 1 CTG + 1 TGC = 2
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7302167|gb|AE003784.1|AE003784 Drosophila melanogaster genomic scaffold 142000013386052 section 1 of 5, complete sequence
Position Repeat Coverage Repeat
18385 ATG * 8 23/24 ATG ATG ATG ATG GTG ATG ATG ATG
91293 ATA * 7 19/21 ATA TGA ATA ATA ATA ATA ATA
122289 GCA * 10 28/30 GCA GCA GCA GCA GCA GCA GCA ACA GCA ACA
148005 CTG * 11 30/33 CTG CTG CTG CTG CTG CTG GTG CTG CTG CTG AGG
148770 ATG * 8 24/24 ATG ATG ATG ATG ATG ATG ATG ATG
170258 AAT * 15 41/45 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT ATT CTA
188987 CTC * 7 19/21 CTC CTC CTC CTA CTC CAC CTC
205780 TGA * 8 22/24 TGA TGA TGA TGA CGA TGA TGA TGC
256586 TGC * 7 20/21 TGC TGC TGC TGC TGC TGT TGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 313072
Total number of repeats detected.............. 9
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 0 0 1 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 0 1 0 0 0 0 0 0 0 0 0 0
CTG 1 0 1 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
2 ATG + 1 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 1
0 AGC + 1 GCA + 0 CAG + 0 GCT + 1 CTG + 1 TGC = 3
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7289017|gb|AE003098.1|AE003098 Drosophila melanogaster genomic scaffold 142000013385318, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 24781
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7316098|gb|AE002778.1|AE002778 Drosophila melanogaster genomic scaffold 142000013386042, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7302304|gb|AE003790.1|AE003790 Drosophila melanogaster genomic scaffold 142000013386042 section 2 of 2, complete sequence
Position Repeat Coverage Repeat
43875 CAC * 7 19/21 CAC CAC CAG CAC CAG CAC CAC
43931 GCA * 12 34/36 GCA GCA GCA GCA GCA GCA ACA GCA ACA GCA GCA GCA
44300 GAC * 8 22/24 GAC GAC GAC GAC GAC AAC GGC GAC
45406 CAG * 7 19/21 CAG CAC CAG CAG CAG CAC CAG
55826 ATA * 11 30/33 ATA CTA ATA ATA ATA ATA ATA ATA ATA ATA CTC
79578 TGA * 8 22/24 TGA TGG CGA TGA TGA TGA TGA TGA
88388 AAT * 7 20/21 AAT AAT AAT AAT AAT AAT AAA
136920 TGC * 7 19/21 TGC TGC TGG TGG TGC TGC TGC
136947 TGC * 7 19/21 TGC TGT TGC TGA TGC TGC TGC
137820 TGC * 8 22/24 TGC TGC TGC TGT TGG TGC TGC TGC
139057 CTG * 7 19/21 CTG TTG CTG CTG TTG CTG CTG
139080 GCT * 8 22/24 GCT GCT GCT GCT GTT GCT GCT GCA
140761 TGC * 11 30/33 TGC TGC TGT TGC TGC TGC TGC TGC TGC AAC TGC
141735 GCT * 7 19/21 GCT GCT GCT GAT GCT GCT GGT
141953 TGT * 7 20/21 TGT TGT TGT TGT TGT TGT GGT
143092 TGC * 7 20/21 TGC TGC TGC TGC TGC TGC TGT
173164 TGT * 8 22/24 TGT TGT TGG TGT TGT TGA TGT TGT
188283 CAT * 8 22/24 CAT CGT CAT CAT CAT CAA CAT CAT
188356 GCA * 7 19/21 GCA ACA GCA GCA GCA GAA GCA
200399 TGT * 7 19/21 TGT TGT TGT TGT TAC TGT TGT
-----------------------------------------------------------------------------------------
Total sequence length......................... 210451
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 0 1 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 3 3 0 0 0 0 0 0 0 0 0 0 0
TGC 5 4 1 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 1 1 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 3 TGT = 3
0 ATG + 1 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 2 GCA + 1 CAG + 2 GCT + 1 CTG + 5 TGC = 11
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7302263|gb|AE003789.1|AE003789 Drosophila melanogaster genomic scaffold 142000013386042 section 1 of 2, complete sequence
Position Repeat Coverage Repeat
34136 ATG * 11 31/33 ATG ATG ATG ATG CTG ATG ATG ATG ATG GTG ATG
53748 AGG * 8 22/24 AGG AGC AGG AGC AGG AGG AGG AGG
58575 CAT * 10 27/30 CAT CGT CAT CAT CCT CAT CAT CAT CAT CGT
62626 TCA * 7 19/21 TCA TCA CCA TCA TCA CCA TCA
119349 AAT * 7 20/21 AAT AAA AAT AAT AAT AAT AAT
122057 CTT * 7 20/21 CTT CGT CTT CTT CTT CTT CTT
123880 CAG * 7 19/21 CAG CAA CAA CAG CAG CAG CAG
175224 GCA * 7 19/21 GCA GCA GCA GCA GGC GCA GCA
239257 TCG * 7 19/21 TCG TCC TCG TCG TCC TCG TCG
239358 ATC * 8 22/24 ATC ATC ATC CTC ATC ATC GTC ATC
285361 GCA * 7 19/21 GCA ACA TCA GCA GCA GCA GCA
286008 TGC * 8 22/24 TGC TGC TGC TTC TGC TGT TGC TGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 298904
Total number of repeats detected.............. 12
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 0 1 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAT 1 0 1 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 1
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
1 ATG + 0 TGA + 0 GAT + 1 CAT + 1 ATC + 1 TCA = 4
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 1
0 AGC + 2 GCA + 1 CAG + 0 GCT + 0 CTG + 1 TGC = 4
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 1 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7316102|gb|AE002787.1|AE002787 Drosophila melanogaster genomic scaffold 142000013386047, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7304243|gb|AE003842.1|AE003842 Drosophila melanogaster genomic scaffold 142000013386047 section 52 of 52, complete sequence
Position Repeat Coverage Repeat
22022 CTG * 8 22/24 CTG CTG CTA CTG CTG CTG CTT CTG
26100 GAT * 7 19/21 GAT GAT GAA AAT GAT GAT GAT
33032 CTG * 7 19/21 CTG GTG CTG CTG CTG CTG TTG
45482 TTG * 8 22/24 TTG TTG TTG TTA TTG TTG TTG TCG
60906 CAG * 7 19/21 CAG CAG CAG GAG CAG CGG CAG
73542 TTC * 7 19/21 TTC TTC TTC ATC TCC TTC TTC
79174 TGC * 7 20/21 TGC TGC CGC TGC TGC TGC TGC
87441 CAG * 8 22/24 CAG CAG CAG CAG AAG CAG CAT CAG
110448 CAA * 7 19/21 CAA CAA CAA CAG CAA CGA CAA
174966 CAT * 7 20/21 CAT CAT CAT CAT CAA CAT CAT
183500 TAT * 8 23/24 TAT TAT TAT TAT TAT TAT TAT TTT
-----------------------------------------------------------------------------------------
Total sequence length......................... 252413
Total number of repeats detected.............. 11
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TTC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CTG 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 1 TTC + 0 TCT = 1
0 AAC + 0 ACA + 1 CAA + 0 GTT + 1 TTG + 0 TGT = 2
0 ATG + 0 TGA + 1 GAT + 1 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 2 CAG + 0 GCT + 2 CTG + 1 TGC = 5
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7304203|gb|AE003841.1|AE003841 Drosophila melanogaster genomic scaffold 142000013386047 section 51 of 52, complete sequence
Position Repeat Coverage Repeat
4351 GGA * 7 19/21 GGA GGA GGA GGA GGA AGA AGA
21293 GGA * 7 19/21 GGA GGC CGA GGA GGA GGA GGA
24165 CTT * 7 19/21 CTT CTT CTT CTT CTG CTT CTC
25233 GGA * 7 19/21 GGA GGA GGA CGA GGA GGA TGA
27916 GAT * 7 19/21 GAT GAT GAT GAT GTT GAT GAG
28734 CCT * 7 19/21 CCT CCT CCT TCT CCT CCC CCT
34598 AGG * 7 19/21 AGG AGG AGG AGG AGG AGG GAG
43351 AAC * 8 22/24 AAC AAC AAA AAC AAC AAC AAC GAC
45745 CAT * 15 43/45 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAC CAT CAT CAG CAT
82728 CGC * 7 19/21 CGC CTC CTC CGC CGC CGC CGC
82838 TGC * 7 19/21 TGC TGC AGC TGC TGC TGA TGC
82895 TGC * 11 31/33 TGC TGC TGC TGT TGC TGC TGC TGC TGG TGC TGC
84417 AGG * 7 19/21 AGG AGG AGT AGG AGG AGG AGC
84589 GGA * 12 33/36 GGA GGA GGA GGA GGA GGA TGA GGA GGA GAA GGA GGC
92142 CCG * 7 19/21 CCG CCG CCG CCG CCG CCG TTG
92254 TGT * 7 20/21 TGT TAT TGT TGT TGT TGT TGT
101336 CTC * 7 19/21 CTC CTC CTC CTC CTC TTC ATC
109835 ACC * 7 19/21 ACC ACC ACC ATC ACC ACC CCC
110241 AGC * 7 19/21 AGC AAC AGC AGC AGC AGC AAC
111550 GTC * 7 19/21 GTC GTC GTC ATC GTC ATC GTC
113406 GTT * 7 19/21 GTT GTA GTT GTG GTT GTT GTT
113473 GTG * 8 22/24 GTG TTG GTG GTG GTG GAG GTG GTG
118046 CAG * 9 26/27 CAG CAG CAG CAG CAG CAG CAG CAT CAG
145983 CAT * 7 19/21 CAT CAT CAT CTT CAT CAT CGT
189917 GTT * 7 20/21 GTT GTT GTT GTT ATT GTT GTT
202863 CAT * 8 22/24 CAT CAT CGT CAT CAT CAT CAC CAT
207058 ATA * 10 29/30 ATA ATA ATA ATA ATT ATA ATA ATA ATA ATA
218726 ACC * 8 22/24 ACC ACT ACC ACC ACC ACC ACC ACT
230823 CCT * 8 22/24 CCT ACT CCT CCT CCT CCT CCG CCT
241490 ATG * 7 19/21 ATG ATG ATG ATG ATG AAG AAG
244194 ATT * 16 44/48 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATA ATT ACT GTG
-----------------------------------------------------------------------------------------
Total sequence length......................... 262082
Total number of repeats detected.............. 31
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 0 1 0 0 0 0 0 0 0 0 0 0
ATT 1 0 0 0 1 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 2 2 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACC 2 2 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 1 1 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 2 2 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTC 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 4 3 1 0 0 0 0 0 0 0 0 0 0
CAT 3 2 0 1 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CGC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 1 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 1
1 AAC + 0 ACA + 0 CAA + 2 GTT + 0 TTG + 1 TGT = 4
1 ATG + 0 TGA + 1 GAT + 3 CAT + 0 ATC + 0 TCA = 5
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
2 AGG + 4 GGA + 0 GAG + 2 CCT + 1 CTC + 0 TCC = 9
1 AGC + 0 GCA + 1 CAG + 0 GCT + 0 CTG + 2 TGC = 4
0 ACG + 0 CGA + 0 GAC + 0 CGT + 1 GTC + 0 TCG = 1
2 ACC + 0 CCA + 0 CAC + 0 GGT + 1 GTG + 0 TGG = 3
0 GGC + 0 GCG + 0 CGG + 0 GCC + 1 CCG + 1 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7304160|gb|AE003840.1|AE003840 Drosophila melanogaster genomic scaffold 142000013386047 section 50 of 52, complete sequence
Position Repeat Coverage Repeat
2192 CAA * 10 27/30 CAA CAA CAA CAA CTA CAA CAA CAA CAA AAC
12221 GTT * 8 23/24 GTT GTT GTT GTT GTT GTT GTT GCT
20713 TGC * 8 23/24 TGC TGC TGC TGC TGC TGC TGC TGT
26700 GTT * 9 25/27 GTT AAT GTT GTT GTT GTT GTT GTT GTT
26790 GTT * 7 19/21 GTT GTT GTT TTT GTT GCT GTT
28859 GGT * 11 31/33 GGT GGT GGT GGT AGT GGT GGT GGT GGT GGT GCT
40873 AGC * 8 22/24 AGC AGG AGA AGC AGC AGC AGC AGC
40914 CAG * 11 30/33 CAG CAG CAA CAG CAG CAG CAG CAG CAT CAG CAA
40950 CAG * 11 30/33 CAG CAG CAG CAG CAG CAG CAG CGT CAG CAT CAG
40997 GCA * 8 23/24 GCA GCA GCA ACA GCA GCA GCA GCA
41694 GCA * 7 19/21 GCA GCA GCA GCA GCA GCA ACG
73860 ATA * 10 27/30 ATA ATA ATA ATA TTA ATA ATA ATA ATA TTG
83286 CAG * 7 19/21 CAG CAG CAG TAG CAG CAG CAA
87134 TGT * 8 22/24 TGT TGT TGT TGT TCT TGT TGC TGT
92440 CCT * 12 33/36 CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CAG TCT
142925 TTA * 7 19/21 TTA TTA TTA TTA TTA CTA TTG
148175 TGC * 7 19/21 TGC TGC TGC TGC TGT TGG TGC
167360 TCA * 9 25/27 TCA TCA TCA TCA TCA TCA TCA TCG TCG
191786 GGA * 14 38/42 GGA GGA GGA GGA GGC GGA AGA GGA GGA CGA GGA GGA GGA GGC
191970 CCT * 7 20/21 CCT CCT CCT CTT CCT CCT CCT
-----------------------------------------------------------------------------------------
Total sequence length......................... 259764
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 1 0 1 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 3 3 0 0 0 0 0 0 0 0 0 0 0
GGA 1 0 0 1 0 0 0 0 0 0 0 0 0
GGT 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 1 0 1 0 0 0 0 0 0 0 0 0 0
CAG 3 1 2 0 0 0 0 0 0 0 0 0 0
CCT 2 1 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 1 CAA + 3 GTT + 0 TTG + 1 TGT = 5
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 1 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 0 GAG + 2 CCT + 0 CTC + 0 TCC = 3
1 AGC + 2 GCA + 3 CAG + 0 GCT + 0 CTG + 2 TGC = 8
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 1 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7304109|gb|AE003839.1|AE003839 Drosophila melanogaster genomic scaffold 142000013386047 section 49 of 52, complete sequence
Position Repeat Coverage Repeat
4241 CAC * 7 19/21 CAC CAC CAT CAC CAC CAC CGC
29126 CGA * 7 19/21 CGA CGA CGA CGA CGA CGT CGT
43001 AGC * 7 20/21 AGC AGC AGC AGC AGC AGC AGG
48319 CAG * 15 41/45 CAG CAG CAG CAA CAG CAG CAG CAA CAG CAG CAG CAG CAG CAA CAC
48367 CAG * 8 22/24 CAG CAG CAG CAT CAG CAG CAA CAG
56855 ACA * 7 19/21 ACA ACA ACA ACA ACA ACA ATT
96743 GGT * 7 20/21 GGT GGT GGT GGT GGT GGT GGC
107797 CTG * 8 22/24 CTG CTG CTG CTG CTG CTA CTA CTG
137987 CTG * 10 27/30 CTG CTC CTG TTG CTG CTG CTG CTG CTG CTC
138590 TGC * 8 22/24 TGC TGC TGC TGC CGC TGC TGC AGC
138659 TGC * 7 19/21 TGC TGA TAC TGC TGC TGC TGC
142017 GCT * 8 22/24 GCT GCT GCT GCT GCT TCT GCT GGT
142084 CTG * 7 19/21 CTG CAG TTG CTG CTG CTG CTG
142118 TGC * 7 19/21 TGC TGC TGT TGT TGC TGC TGC
143113 TGC * 8 22/24 TGC TGC TGC TCC GGC TGC TGC TGC
150078 AGC * 11 30/33 AGC AGC AGC AAC AGC AAC AGC AGC AGC AGC ATC
200129 CAG * 7 19/21 CAG CAG CAG CAA CAG CAG CAA
227038 ATA * 7 19/21 ATA ATA ATA ATA ATA ATA TTT
-----------------------------------------------------------------------------------------
Total sequence length......................... 261850
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 1 1 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 4 4 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 3 2 0 1 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 3 2 1 0 0 0 0 0 0 0 0 0 0
CGA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
2 AGC + 0 GCA + 3 CAG + 1 GCT + 3 CTG + 4 TGC = 13
0 ACG + 1 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 1 CAC + 1 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7304068|gb|AE003838.1|AE003838 Drosophila melanogaster genomic scaffold 142000013386047 section 48 of 52, complete sequence
Position Repeat Coverage Repeat
7764 TCA * 8 22/24 TCA TCA TCG TCA TCA TCA TCA TCG
7788 TCG * 7 19/21 TCG TAG TCG TCG TCG TCG TCA
8092 TGC * 7 20/21 TGC TGC TGC TTC TGC TGC TGC
11266 TGG * 7 19/21 TGG TGG TGG TGG TGG CGG TGA
19258 CGT * 7 19/21 CGT CGT CGT TGT CGT CAT CGT
20331 GAC * 7 19/21 GAC GAC GGC AAC GAC GAC GAC
23815 GCA * 7 19/21 GCA GCA GCA GAA GCA GCA ACA
46199 TGG * 7 19/21 TGG TAG TGG TGG TGC TGG TGG
53263 CTC * 10 27/30 CTC CTC TTC CTC CTC CTG CTC CTC CTC CGC
62178 CTC * 7 19/21 CTC CTC CTC CTC CTC ATC GTC
63522 AAT * 7 20/21 AAT AAC AAT AAT AAT AAT AAT
68791 CTT * 7 19/21 CTT CTT TTT CTT CTC CTT CTT
127039 GCA * 7 19/21 GCA GCA GCA ACA GCA GCA ACA
127064 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAG TCG
224353 AAC * 7 19/21 AAC AAC AAC AAC AAG AAC CAC
229629 TTG * 7 19/21 TTG ATG TTG TTG TTG TTG TGG
229900 GTT * 7 19/21 GTT GTT GTT GTT ATT GTT GTG
233466 CCA * 8 22/24 CCA CCA CCA CTA CCA GCA CCA CCA
237893 GCC * 7 19/21 GCC GCC GCC TCC CCC GCC GCC
242353 TTA * 13 36/39 TTA TTA TTA TTA TTG TTG TTA TTA TTA TTA TTA TTA TTT
244974 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC TAC TCC
247194 GTT * 11 30/33 GTT GTT GTT GTT ATT GTT GTT GTT GGT GGT GTT
247239 GCA * 7 20/21 GCA GCA GAA GCA GCA GCA GCA
248727 GAT * 7 19/21 GAT TAT GGT GAT GAT GAT GAT
250837 GGC * 10 28/30 GGC GGC GGC GGC GGC AGC AGC GGC GGC GGC
251445 CGG * 7 19/21 CGG CGG CGG CAG CAG CGG CGG
251519 CAG * 7 20/21 CAG CAG CAG CAG CAG CAA CAG
251774 CAA * 9 25/27 CAA CAA CAA CAA CAA TAA TAA CAA CAA
252030 CAC * 9 25/27 CAC CAT CAC CAC CAC CAT CAC CAC CAC
-----------------------------------------------------------------------------------------
Total sequence length......................... 263411
Total number of repeats detected.............. 29
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 0 0 1 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 2 1 1 0 0 0 0 0 0 0 0 0 0
GGC 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 3 3 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 2 1 1 0 0 0 0 0 0 0 0 0 0
CGT 1 1 0 0 0 0 0 0 0 0 0 0 0
CGG 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 1
1 AAC + 0 ACA + 1 CAA + 2 GTT + 1 TTG + 0 TGT = 5
0 ATG + 0 TGA + 1 GAT + 0 CAT + 0 ATC + 1 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 2 CTC + 0 TCC = 2
0 AGC + 3 GCA + 2 CAG + 0 GCT + 0 CTG + 2 TGC = 7
0 ACG + 0 CGA + 1 GAC + 1 CGT + 0 GTC + 1 TCG = 3
0 ACC + 1 CCA + 1 CAC + 0 GGT + 0 GTG + 2 TGG = 4
1 GGC + 0 GCG + 1 CGG + 1 GCC + 0 CCG + 0 CGC = 3
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7304040|gb|AE003837.1|AE003837 Drosophila melanogaster genomic scaffold 142000013386047 section 47 of 52, complete sequence
Position Repeat Coverage Repeat
21285 CAG * 7 19/21 CAG CAC CAG CAG CAA CAG CAG
152794 CTG * 11 31/33 CTG CTG CTG CTG TTG CTG CTG CTG CTG CTG ATG
152991 GCT * 8 22/24 GCT GCT GCT GCT GCT GTT GTT GCT
153737 ACT * 7 19/21 ACT ACT ACT ACA ACT ACT ACA
154269 TGC * 7 19/21 TGC GGA TGC TGC TGC TGC TGC
155439 GTG * 8 22/24 GTG GTG GGG ATG GTG GTG GTG GTG
158500 ACC * 7 19/21 ACC AGC CCC ACC ACC ACC ACC
195457 TGT * 7 19/21 TGT TGT TAT TGT TGT TGT TGG
195601 TGC * 10 27/30 TGC TGC TGC TGT TGC CGC TGC TGC TGC CGC
198585 AGC * 10 27/30 AGC AGC AGC AGC AGC AGC AGC GGC AAC AAC
198873 TGC * 13 36/39 TGC TGC TGC TGC TGC TGC TGC TGC AAC TGC TGC TGC GGC
200307 TAA * 7 19/21 TAA AAA AAA TAA TAA TAA TAA
208609 GCT * 8 22/24 GCT ACT TCT GCT GCT GCT GCT GCT
211818 AAT * 8 22/24 AAT GAT AAT AAT AAT AAT AAC AAT
215889 AGC * 7 19/21 AGC AGC AGC AAC AAC AGC AGC
223332 ATC * 8 22/24 ATC CGC ATC ATC ATC ATC ATC ATC
-----------------------------------------------------------------------------------------
Total sequence length......................... 234905
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 1 1 0 0 0 0 0 0 0 0 0 0
ACT 1 1 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 3 1 1 1 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 1 TAA + 0 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 1 TGT = 1
0 ATG + 0 TGA + 0 GAT + 0 CAT + 1 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 1 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
2 AGC + 0 GCA + 1 CAG + 2 GCT + 1 CTG + 3 TGC = 9
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
1 ACC + 0 CCA + 0 CAC + 0 GGT + 1 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7304001|gb|AE003836.1|AE003836 Drosophila melanogaster genomic scaffold 142000013386047 section 46 of 52, complete sequence
Position Repeat Coverage Repeat
7732 TTG * 7 19/21 TTG TTC TTG TTC TTG TTG TTG
7771 TGT * 7 19/21 TGT TGT TGC TGT TGT TGT TGC
33721 GGA * 7 19/21 GGA GGA GGA AGA GGA GCA GGA
36884 TTA * 7 19/21 TTA TAA TTA TTA TTA TTA TTG
49400 ATA * 7 19/21 ATA ATC ATA ACA ATA ATA ATA
49714 TTA * 7 19/21 TTA TTA TTA TTA TTT TTA TTG
154873 ATG * 8 24/24 ATG ATG ATG ATG ATG ATG ATG ATG
155169 TTA * 11 30/33 TTA TTA TTG TTA TTG TTA TTA TTA TTA TTA TTG
173574 CTC * 7 19/21 CTC GTC CTC CTC CTC ATC CTC
173633 CCT * 7 19/21 CCT CCT CAT CCT CCT CCT CGT
174163 TGC * 11 30/33 TGC TGC TGC TGC TGC TGT TGC TGC TGC TGA TGT
174607 TGT * 7 19/21 TGT TGC TGC TGT TGT TGT TGT
176932 GCT * 8 22/24 GCT GCT GCT GCT GCT GCT GCT GGA
177051 GCA * 8 22/24 GCA GCA GCA GCT GCA GCA GCA GCC
177192 TGC * 7 19/21 TGC TGT TGC TGC TGC TGC TGT
179279 GTG * 7 20/21 GTG GTG GTT GTG GTG GTG GTG
180580 TAT * 7 20/21 TAT TAT TAT TAT TAT TAT TTT
206054 GCA * 11 30/33 GCA GCA ACA ACA GCA GCA GCA GCA GCA GCA ACA
211152 ATG * 7 19/21 ATG ATG ATA ATG ATG ATG ACG
246281 TCC * 7 19/21 TCC TCC AGC TCC TCC TCC TCC
-----------------------------------------------------------------------------------------
Total sequence length......................... 253189
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 2 2 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 3 2 1 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 2 1 1 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 1 1 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 3 TTA + 1 TAT = 5
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 1 TTG + 2 TGT = 3
2 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 0 GAG + 1 CCT + 1 CTC + 1 TCC = 4
0 AGC + 2 GCA + 0 CAG + 1 GCT + 0 CTG + 2 TGC = 5
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 1 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7303956|gb|AE003835.1|AE003835 Drosophila melanogaster genomic scaffold 142000013386047 section 45 of 52, complete sequence
Position Repeat Coverage Repeat
5129 CAG * 15 41/45 CAG CAG CAG CAG CAG CCG CCG CAG CAG CAG CAG CAG CAA CAG CAT
14151 CTG * 7 19/21 CTG CTG CTG CTT CTG GTG CTG
25639 TGC * 8 22/24 TGC TGT TGT TGC TGC TGC TGC TGC
28566 CTG * 11 30/33 CTG CTG CTG CTG CTA CTG CTG CTG CTG CCG GTG
28955 GGT * 7 19/21 GGT GGT GGT GTT GGC GGT GGT
30097 TGC * 12 33/36 TGC TGC TGC TGC AGA TGC TGC TGC TGC TGC AGC TGC
38870 GCA * 8 23/24 GCA GAA GCA GCA GCA GCA GCA GCA
47250 TCC * 7 19/21 TCC TCC TCC TCC TCC TCC AGC
51745 CAC * 8 22/24 CAC CAG CAC CAC CAC CAC CAC CAA
59758 ACA * 10 27/30 ACA ACA ACA ACA ACA ACA ACC ACA ACA CCT
60526 CAG * 7 19/21 CAG CAG CAG CAG CAG CAC CAC
66509 GCC * 8 22/24 GCC GCC GCC ACC GCC GCC GCC CCC
70436 GCA * 7 19/21 GCA GCA ATA GCA GCA GCA GCA
98146 CTC * 7 19/21 CTC CTC CTC CTC CGC CTG CTC
100693 TGC * 8 22/24 TGC TGC TGA TGC TGC TAC TGC TGC
108513 TAA * 7 19/21 TAA TAA TAT TAA TAT TAA TAA
131723 GCT * 8 22/24 GCT GCT GCT GAT GTT GCT GCT GCT
132012 CTG * 7 19/21 CTG CTG TTG CTG CTG CTG GTG
158279 TGC * 8 22/24 TGC TGA TGC TGC TGC TGC TGC TGG
168931 TCC * 7 19/21 TCC ACC TCC TCG TCC TCC TCC
203579 GCT * 7 19/21 GCT GGT GCT ACT GCT GCT GCT
203865 TGC * 17 47/51 TGC TGA AGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGT TGC TGC TGT
215618 GCT * 7 20/21 GCT GTT GCT GCT GCT GCT GCT
221088 AAT * 10 27/30 AAT AAT AGT CAT AAT AAT AAT AAT AAT AAA
253596 CCG * 8 22/24 CCG CCG CCG CCG CCG CCG CCG CAT
257085 TGC * 15 41/45 TGC TGC TGC TGC TGT TGC TGC TGC TGT TGC TGC TGA TGC TGC TGG
-----------------------------------------------------------------------------------------
Total sequence length......................... 259860
Total number of repeats detected.............. 26
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 0 1 0 0 0 0 0 0 0 0 0 0
ACA 1 0 1 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 6 3 1 1 1 0 0 0 0 0 0 0 0
TCC 2 2 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
GCT 3 3 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 1 0 1 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 3 2 1 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 1 TAA + 0 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 2 TCC = 3
0 AGC + 2 GCA + 2 CAG + 3 GCT + 3 CTG + 6 TGC = 16
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 1 CAC + 1 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 1 GCC + 1 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7303908|gb|AE003834.1|AE003834 Drosophila melanogaster genomic scaffold 142000013386047 section 44 of 52, complete sequence
Position Repeat Coverage Repeat
13713 TCC * 10 27/30 TCC TCC TCA TCC TCT TCC TCC TCC TCC TCG
18383 GCT * 8 22/24 GCT GCT GCT TCT GCT GCT GCT TCT
34205 GTT * 7 19/21 GTT GTT GCT GTT GTT GCT GTT
49319 AAT * 8 23/24 AAT AAT AAT AAC AAT AAT AAT AAT
59910 TTA * 7 19/21 TTA TTA TTA TTA TAA CTA TTA
80462 GAG * 8 23/24 GAG GAG GAG GAG GAG GAC GAG GAG
81440 CAC * 16 44/48 CAC TAC CAC CAC CAC AAC CAC CAC CAC AAC CAC CAC CAC CAC CAC TAC
97078 AGC * 13 36/39 AGC GGC GGC AGC AGC AGC AGC AGC AGC AGC AGC AGC AAC
117391 TGG * 7 19/21 TGG TGG ATG TGG TGG TGG TGG
118147 CAC * 7 19/21 CAC CAC TAC CAC CTC CAC CAC
121459 AGC * 7 19/21 AGC AGC GGC AGC AGC AGC AAC
159017 ATA * 7 19/21 ATA ATA ATA ATA ATA ATA TTT
161612 ATA * 7 19/21 ATA ATA ATA ATA ATA ATA TTT
230729 TCA * 8 22/24 TCA TAA TCA TCA TCA TCA TCA TCT
-----------------------------------------------------------------------------------------
Total sequence length......................... 257324
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 2 2 0 0 0 0 0 0 0 0 0 0 0
AGC 2 1 0 1 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
TCC 1 0 1 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAC 2 1 0 0 1 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 2 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 4
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 1 GTT + 0 TTG + 0 TGT = 1
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 1 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 1 TCC = 2
2 AGC + 0 GCA + 0 CAG + 1 GCT + 0 CTG + 0 TGC = 3
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 2 CAC + 0 GGT + 0 GTG + 1 TGG = 3
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7303875|gb|AE003833.1|AE003833 Drosophila melanogaster genomic scaffold 142000013386047 section 43 of 52, complete sequence
Position Repeat Coverage Repeat
273 TTA * 8 22/24 TTA TTA TTA TTA TTA TTA TTC ATA
8734 CAA * 7 19/21 CAA CAA AAA CAA CAG CAA CAA
45761 GTT * 9 25/27 GTT TTT GTT TTT GTT GTT GTT GTT GTT
72982 GTT * 10 28/30 GTT GTT GTT GTT GTT GTG GTT GTT GTT GTG
81740 CTG * 7 19/21 CTG CTC CTG CTC CTG CTG CTG
88005 TCA * 7 19/21 TCA TCA TCA TCA TCA TCG CCA
88900 CAG * 8 22/24 CAG CAT CGG CAG CAG CAG CAG CAG
105314 GCT * 7 19/21 GCT GGT GCT GCT GTT GCT GCT
105960 TGC * 9 25/27 TGC TGC TGC TGT TGC TGC TGC TGC TGG
106236 GCT * 9 26/27 GCT GCT GCT ACT GCT GCT GCT GCT GCT
106404 TGC * 8 22/24 TGC TGC TGC TGC TGT TGC TGT TGC
106449 TGC * 11 31/33 TGC TGC TGC TGC TGG TGT TGC TGC TGC TGC TGC
106553 CTG * 7 19/21 CTG CTG CTG CTG TTG CTG CGG
120111 TGG * 12 33/36 TGG TGG TGG TGG TGG TGA TGG TGG TGG TGG TGC TGC
120318 TGC * 7 19/21 TGC TGC TGC GGC TGC TGC TGT
120362 TGC * 7 19/21 TGC TGC GGC TGT TGC TGC TGC
120400 CTG * 7 19/21 CTG CTG CTG CTG CCG CCG CTG
128519 TGC * 7 20/21 TGC TGT TGC TGC TGC TGC TGC
129245 GCT * 8 23/24 GCT GCT GCT GCT GCT GCT GCT GCC
129365 CTG * 7 19/21 CTG CTG CTG CTG CTG TTG TTG
129492 TGC * 7 19/21 TGC TGC TGC TGG TGT TGC TGC
137296 GTT * 10 27/30 GTT GTT GTT GTC GTT GTG GTT GTT GTT GCT
144028 TAT * 8 22/24 TAT TAT TAT TAC TAT TAT TAT TGT
163543 TTG * 7 19/21 TTG TTG TTG TTG TTG TGA TTG
205740 GCA * 7 19/21 GCA GCA GCA ACA GCA TCA GCA
218459 AGC * 7 19/21 AGC AGC AAC AAC AGC AGC AGC
218515 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CAA
242780 GAG * 8 22/24 GAG GAG AAG GAG GAT GAG GAG GAG
250659 CTC * 7 19/21 CTC CTC CTC CTG CTC CTC CGC
257633 CAA * 8 23/24 CAA CAA CAA CAA TAA CAA CAA CAA
258493 CAG * 10 29/30 CAG CAG CAG CAG CAC CAG CAG CAG CAG CAG
259078 CAA * 7 19/21 CAA CAA CAA CAA CAA CAC CAC
259105 CAA * 15 41/45 CAA CAA CAA CAA CAC CAA CAA CAA CAA CAA CAA CAG CAA CAT CAG
-----------------------------------------------------------------------------------------
Total sequence length......................... 265562
Total number of repeats detected.............. 33
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 7 6 1 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 3 1 2 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 3 3 0 0 0 0 0 0 0 0 0 0 0
CAA 4 3 0 1 0 0 0 0 0 0 0 0 0
CAG 3 2 1 0 0 0 0 0 0 0 0 0 0
CTG 4 4 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 1 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 4 CAA + 3 GTT + 1 TTG + 0 TGT = 8
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 1 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 0 CCT + 1 CTC + 0 TCC = 2
1 AGC + 1 GCA + 3 CAG + 3 GCT + 4 CTG + 7 TGC = 19
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 1 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7303842|gb|AE003832.1|AE003832 Drosophila melanogaster genomic scaffold 142000013386047 section 42 of 52, complete sequence
Position Repeat Coverage Repeat
11490 AGC * 7 19/21 AGC AGC AAC AAC AGC AGC AGC
13630 AAT * 7 19/21 AAT AAT AAT AAT AAT AAT TAA
18812 GAG * 7 19/21 GAG AAG GTG GAG GAG GAG GAG
67814 CAG * 7 19/21 CAG CAG CAG CAG CAA CAA CAG
75557 CAG * 10 28/30 CAG CAG CAG CAG CAG CAG CCG CAG CAG CCG
75709 GCA * 8 23/24 GCA GCT GCA GCA GCA GCA GCA GCA
76691 TCA * 8 23/24 TCA TCA TCA TCA TCA TCA TCA GCA
79655 AGC * 10 28/30 AGC AGT AGC AGC AGC AGC AGC AGC AGC ATC
131305 CTG * 10 29/30 CTG CTG CTG CTG CTG CTG CTG CTG CTC CTG
136786 ATT * 14 39/42 ATT ATT ATT ATT ATT ATT ATT ATT ATC ATT ATT TTC ATT ATT
152254 TAC * 8 23/24 TAC TAC TAC GAC TAC TAC TAC TAC
193846 CAG * 7 19/21 CAG CAG CAG CAA CAG CAG CCG
199292 GCA * 7 20/21 GCA GCA GCA GCA GAA GCA GCA
229091 AGC * 7 19/21 AGC TGC AGC AGC AGT AGC AGC
235174 AAC * 7 19/21 AAC CAC AAC AAC GAC AAC AAC
-----------------------------------------------------------------------------------------
Total sequence length......................... 261713
Total number of repeats detected.............. 15
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 1 0 0 1 0 0 0 0 0 0 0 0 0
AGC 3 2 1 0 0 0 0 0 0 0 0 0 0
TAC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 3 2 1 0 0 0 0 0 0 0 0 0 0
CTG 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 1 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 1 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 1 TAC = 1
0 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 1
3 AGC + 2 GCA + 3 CAG + 0 GCT + 1 CTG + 0 TGC = 9
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7303794|gb|AE003831.1|AE003831 Drosophila melanogaster genomic scaffold 142000013386047 section 41 of 52, complete sequence
Position Repeat Coverage Repeat
490 GTT * 7 19/21 GTT GTT GTT GTT GTT GCT GTA
7048 GGT * 7 19/21 GGT GGT GGT GGT AAT GGT GGT
29934 ATG * 7 19/21 ATG ACG ACG ATG ATG ATG ATG
65736 ACA * 10 27/30 ACA ACA ACA ACT ACC ACA ACA ACA ACA ACC
66018 ACA * 8 22/24 ACA ACA ACA ACA ACC ACA ACA ACG
75250 TCA * 7 19/21 TCA TCA TCA TCA TCA CCA TAA
111407 GTA * 8 22/24 GTA GTT GTA GAA GTA GTA GTA GTA
119232 AAC * 7 20/21 AAC ACC AAC AAC AAC AAC AAC
128814 GCG * 7 19/21 GCG GCG GCG GCA GCA GCG GCG
170554 GAG * 8 22/24 GAG GTG GAG GAG GAG GAG GAG GAA
176889 TGC * 8 22/24 TGC TGC TGC TGC TGC TAC TGC CGC
181884 ATA * 7 19/21 ATA AAA ATA AAA ATA ATA ATA
191987 GCA * 7 19/21 GCA GCA GCA ACA GCA GCA GCC
192197 CAG * 10 27/30 CAG CAG CAG CAA CAG TAG CAG CAG CAG CAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 260916
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 2 1 1 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTA 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 2 ACA + 0 CAA + 1 GTT + 0 TTG + 0 TGT = 4
1 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 1 TCA = 2
0 AGT + 1 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 1
0 AGC + 1 GCA + 1 CAG + 0 GCT + 0 CTG + 1 TGC = 3
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 1 GGT + 0 GTG + 0 TGG = 1
0 GGC + 1 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7303755|gb|AE003830.1|AE003830 Drosophila melanogaster genomic scaffold 142000013386047 section 40 of 52, complete sequence
Position Repeat Coverage Repeat
4318 CAA * 11 31/33 CAA CAA CAA CAA CTA CAA CAA CAA CAA CAA CAG
6964 TCA * 8 23/24 TCA TCA TCA TCG TCA TCA TCA TCA
36863 CAA * 8 22/24 CAA CAA CAA CAA TAA CAA CAA CAG
36947 CAA * 7 19/21 CAA CAA CAA CAG CAA CAA TAA
39658 GCT * 7 19/21 GCT GCT GCT GTT GCT GTT GCT
39681 TGC * 7 19/21 TGC TGC TGC TCC TGC TCC TGC
58229 GAG * 8 22/24 GAG GAG GAG GTG GAG GAG TAG GAG
110440 GCT * 14 38/42 GCT GCT GCT GCT GCT ACT GCC GCT GCT GCT GCT GCT GCT ACC
136744 GCA * 10 27/30 GCA GCA GCA ACA GCA ACA GCA GCA GCA ACA
136775 CAG * 12 33/36 CAG CAG CAG CAG CAG CAG CAA CAG CAA CAG CAG CAA
138420 CAG * 10 27/30 CAG CAG CAG CAA CAG CAG CAG CAG CAG GTG
138743 CAG * 7 20/21 CAG CAG CAG CAG CAG CGG CAG
139404 GCA * 10 28/30 GCA GCA GCA GCA GCA GCA GCC GCC GCA GCA
147119 CAA * 8 23/24 CAA CAA CAA CAA CAA CAC CAA CAA
147171 AGC * 11 30/33 AGC AGC AGC AGC AGC AGC AGC AGC AAC AAC AAC
159696 CTG * 11 30/33 CTG CGG ATG CTG CTG CTG CTG CTG CTG CGG CTG
172908 CCA * 7 19/21 CCA TCA CCA TCA CCA CCA CCA
185881 AGC * 7 19/21 AGC AGC AAC AAC AGC AGC AGC
185937 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CAA
198429 GCT * 8 23/24 GCT GCT GCT GCT GCT GCT GCT GCC
205012 CAT * 9 25/27 CAT CAC CAT CAT CAT CAT CAT CAT CAG
217652 GCA * 8 22/24 GCA GCA GCA GCA GCG GCA GAA GCA
219750 GGC * 7 19/21 GGC GGC GGC GAC GGC GGC GGA
243403 TGT * 8 22/24 TGT AGT AGT TGT TGT TGT TGT TGT
245858 GCT * 8 22/24 GCT GCT ACT GCT GCT GCT GCT GCA
249463 ATA * 7 20/21 ATA ATA ATA ATA ATA ATA ATG
252259 TGG * 8 22/24 TGG TGG TGG TGG TGG TGG TGG CCG
-----------------------------------------------------------------------------------------
Total sequence length......................... 261895
Total number of repeats detected.............. 27
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 1 1 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 3 1 2 0 0 0 0 0 0 0 0 0 0
GCT 4 3 0 1 0 0 0 0 0 0 0 0 0
CAA 4 3 1 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 4 2 2 0 0 0 0 0 0 0 0 0 0
CTG 1 0 1 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 4 CAA + 0 GTT + 0 TTG + 1 TGT = 5
0 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 1 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 1
2 AGC + 3 GCA + 4 CAG + 4 GCT + 1 CTG + 1 TGC = 15
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 1 CCA + 0 CAC + 0 GGT + 0 GTG + 1 TGG = 2
1 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7303717|gb|AE003829.1|AE003829 Drosophila melanogaster genomic scaffold 142000013386047 section 39 of 52, complete sequence
Position Repeat Coverage Repeat
3949 CTC * 9 25/27 CTC CGC CGC CTC CTC CTC CTC CTC CTC
4789 TAT * 18 50/54 TAT TAT AAT TAT TAT TAA TAT TAT TAT TAT TAT TGT TAT TAT TAT TGT TAT TAT
6814 TAT * 18 50/54 TAT TAT AAT TAT TAT TAA TAT TAT TAT TAT TAT TGT TAT TAT TAT TGT TAT TAT
14485 CTG * 7 19/21 CTG CTG AAG CTG CTG CTG CTG
14584 CTG * 10 28/30 CTG CTG TTG CTG CTG CTG CTG CTG CTG TTG
16985 GCT * 7 19/21 GCT GCT GCG GCG GCT GCT GCT
17033 TGC * 8 22/24 TGC TGC TGC TGC TGT TGC TGT TGC
18457 TGC * 9 25/27 TGC TGC TGC TGC TGC TGT TGC TGC TGG
18519 CTG * 7 19/21 CTG CTG CTG TTG CTG CTG TTG
31902 AAG * 8 23/24 AAG AAG AAG AAG AAG AAG CAG AAG
44010 CAG * 11 30/33 CAG CAG TAG CAG CAG CAG CAG CAG CAG TGG CAG
51280 ACT * 10 27/30 ACT ACT ACT TCT ACT AGT ACT ACT ACT ACG
60441 CGG * 7 19/21 CGG CGG CGG CAG CAG CGG CGG
62037 AGC * 8 22/24 AGC AGC AGC AAC AGC AGC AAC AGC
70265 AAG * 8 22/24 AAG TAG AAG AAG AAG AAG AAG AGG
73686 ACA * 8 22/24 ACA ACA ACA ACA ACA ACA ACA GTA
74669 CAA * 7 19/21 CAA CAA CAA CAG CAG CAA CAA
77590 ATC * 7 20/21 ATC ATC ATC ATC ATC ATC GTC
81991 GCG * 8 22/24 GCG GCG GCG GCG GCG GCG GCA ACG
83074 GAT * 8 22/24 GAT AGT GAT GAT GAT GAT GAT GAT
84113 AAC * 7 19/21 AAC AAC AAC AAC AAA AGC AAC
108290 GGC * 7 19/21 GGC GGC GCC GGA GGC GGC GGC
108538 AGC * 8 22/24 AGC AGC GGC AGC AGC AGC AGC TGC
129889 TGA * 7 19/21 TGA TGT TTA TGA TGA TGA TGA
131739 GCA * 7 19/21 GCA GCG GCG GCA GCA GCA GCA
138451 AGC * 10 27/30 AGC AGC AGC ATC AGC AGC AGC ATC AGC AAC
165681 AGG * 7 19/21 AGG ATG AGG AGA AGG AGG AGG
197632 TGT * 7 19/21 TGT TGT TAT TAT TGT TGT TGT
197664 TTG * 7 19/21 TTG TTG TTG TTA TTG TTG CTG
197823 TCG * 8 22/24 TCG TCG TCG TCT TCG TAG TCG TCG
198285 TGC * 7 19/21 TGC TGC TGC TGC TGC TCC CGC
213932 CAA * 7 19/21 CAA CAG CAA CAA CAA CAA CAC
216890 CAA * 7 19/21 CAA CAT CAA CAG CAA CAA CAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 258492
Total number of repeats detected.............. 33
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAG 2 2 0 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 3 2 1 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
ACT 1 0 1 0 0 0 0 0 0 0 0 0 0
TAT 2 0 0 0 2 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 3 3 0 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 3 3 0 0 0 0 0 0 0 0 0 0 0
CAG 1 0 1 0 0 0 0 0 0 0 0 0 0
CTG 3 2 1 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CGG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 2 TAT = 2
2 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 2
1 AAC + 1 ACA + 3 CAA + 0 GTT + 1 TTG + 1 TGT = 7
0 ATG + 1 TGA + 1 GAT + 0 CAT + 1 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 1 ACT + 0 CTA + 0 TAC = 1
1 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 2
3 AGC + 1 GCA + 1 CAG + 1 GCT + 3 CTG + 3 TGC = 12
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 1 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
1 GGC + 1 GCG + 1 CGG + 0 GCC + 0 CCG + 0 CGC = 3
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7303677|gb|AE003828.1|AE003828 Drosophila melanogaster genomic scaffold 142000013386047 section 38 of 52, complete sequence
Position Repeat Coverage Repeat
52094 CAG * 9 25/27 CAG CAG CAG CAA CAG CAG CAG CAG AAG
66705 CTC * 8 22/24 CTC ATC CTC CTC CTC CTC CTC TTC
92110 TAA * 10 28/30 TAA TAA TAA TAA TAA TAA TAA TAA TAC AAA
95121 CAA * 7 19/21 CAA CAA CAA GAA CAA TAA CAA
96123 AGA * 8 22/24 AGA AGA AGA AGA AGA AGG CGA AGA
99049 CAA * 7 19/21 CAA CAA CAA CAA AAG CAA CAA
106770 CAT * 7 19/21 CAT CAT CAT CAT CAT CTG CAT
116673 TGT * 9 25/27 TGT TGA TGT TGT TGT TGT TGT TGT TAT
144424 CAG * 7 19/21 CAG CAG CAC CAG CAG CAG CAA
178417 TAT * 7 20/21 TAT TAT GAT TAT TAT TAT TAT
181460 TGC * 8 22/24 TGC TGC TGC TGT TGC TGT TGC TGC
183028 GTA * 9 25/27 GTA GTA GTA GTA GTA GTA GTA GTT GAA
183065 TGT * 7 19/21 TGT GGT TGT TGT TGA TGT TGT
184233 TGC * 8 22/24 TGC TGC TGC TGC TGT TGC TGC TGG
207110 CAG * 8 22/24 CAG CAG AAG CAG CAG CAT CAG CAG
217861 TCC * 8 22/24 TCC TCC GTC TCC TCC TCC TCC TCC
218463 CAA * 7 19/21 CAA CAA TAA CAA CAA CAG CAA
218543 GAT * 14 38/42 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAG AAG GAG
235107 TAT * 18 50/54 TAT TAT AAT TAT TAT TAA TAT TAT TAT TAT TAT TGT TAT TAT TAT TGT TAT TAT
242070 TAT * 18 50/54 TAT TAT AAT TAT TAT TAA TAT TAT TAT TAT TAT TGT TAT TAT TAT TGT TAT TAT
248816 ACC * 7 19/21 ACC ACC ACC ACC ACC AGC AGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 259920
Total number of repeats detected.............. 21
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGA 1 1 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 0 1 0 0 0 0 0 0 0 0 0 0
TAT 3 1 0 0 2 0 0 0 0 0 0 0 0
TGT 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 0 0 1 0 0 0 0 0 0 0 0 0
GTA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 3 3 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 3 3 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 0 ATT + 0 TTA + 3 TAT = 4
0 AAG + 1 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 1
0 AAC + 0 ACA + 3 CAA + 0 GTT + 0 TTG + 2 TGT = 5
0 ATG + 0 TGA + 1 GAT + 1 CAT + 0 ATC + 0 TCA = 2
0 AGT + 1 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 1 TCC = 2
0 AGC + 0 GCA + 3 CAG + 0 GCT + 0 CTG + 2 TGC = 5
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
1 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7303662|gb|AE003827.1|AE003827 Drosophila melanogaster genomic scaffold 142000013386047 section 37 of 52, complete sequence
Position Repeat Coverage Repeat
14668 TGT * 13 36/39 TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TCA GGT
45501 ACC * 8 22/24 ACC ACC ACC ACC ACC ACC ACC AAT
46702 TGC * 8 23/24 TGC TGC TGC TGC TGC TGC TGC TGA
71014 CAA * 7 19/21 CAA CAA CGA CAA CAA CAA CAG
71270 CAG * 14 38/42 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAA CAA CAA CAA
74938 TGC * 10 27/30 TGC TGC TGC TGC TGC TGC TGC CGC TGC TTT
76455 AAC * 7 19/21 AAC AAC AAC AAC AAC AAG AAA
86543 TAC * 7 20/21 TAC TAC TAC TAC TAC TAC TAT
92525 GAT * 9 25/27 GAT GAT GAT GAT GAT CAT GAT GGT GAT
92913 TGC * 10 27/30 TGC TGC TGC TGC TGC TGC TGC TGC CGT TGT
96073 GCT * 21 57/63 GCT GAT GTT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GTT GCT GCC TCC
100214 CAG * 17 47/51 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAA CAT CAG CAA CAG CAA CAG
102760 GCT * 10 28/30 GCT GCC TCT GCT GCT GCT GCT GCT GCT GCT
104038 GCT * 10 27/30 GCT GCT GCT GCT GCT TGT GCT GCT GCT GCC
106460 CAG * 12 33/36 CAG CGG CAG CGG CAG CAG CAG CAG CAG CAG CAG CAA
106742 CAG * 10 28/30 CAG CAG CAG CAG CAG CAG CAG CAG CAG CGC
109596 CTG * 8 22/24 CTG CTG CTG CTG CTG CTT TTG CTG
110039 GCA * 9 25/27 GCA GCA GCA GCA GCA GCA GCA GCA ACT
127044 TAT * 7 20/21 TAT TAT TAT TAT TAT TAT TTT
143186 TGC * 8 22/24 TGC GGC TGC TGC TGC TGC TGT TGC
143222 TGA * 8 22/24 TGA TGA TGA TGA TGA TGC TGA TGC
172408 CAG * 7 19/21 CAG CAT CAG CAA CAG CAG CAG
172742 CAG * 8 22/24 CAG CAG CAG CAG CAA CAG CAA CAG
172769 CAG * 10 28/30 CAG CAG CAG CAG CAG CAG CAG CAG CAG CTC
172873 GCA * 8 22/24 GCA ACT GCA GCA GCA GCA GCA GCA
172970 AGC * 10 28/30 AGC AGC AGC AGC AGT AGC AGC AAC AGC AGC
173020 CAG * 7 19/21 CAG TAG CAG CAG CAG CAT CAG
173214 GCA * 7 19/21 GCA GCA GCA ACA GCA ACA GCA
173236 CAG * 8 22/24 CAG CAG CAG CAG CAA CAC CAG CAG
184779 ATT * 11 30/33 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATG GCT
186044 TGC * 9 25/27 TGC TGC TGC TGC TGA TGC TGC TGC AGC
186413 TGC * 8 23/24 TGC TGC TGC CGC TGC TGC TGC TGC
195105 GCA * 8 22/24 GCA GCA GCA GCA GCA TCA GCA TCA
203188 TGC * 8 23/24 TGC TCC TGC TGC TGC TGC TGC TGC
219347 CTG * 7 20/21 CTG CTG CTG CTG CTG CTG CTC
244003 GAG * 10 28/30 GAG GAG GAG GAG GAG GAG GAG GAG GAT GCG
246001 TGT * 9 26/27 TGT TGT TGT TGT TGT TGT TGT TGT TGC
254123 AAC * 8 22/24 AAC AAC AAC AAC AAC AAC GAA AAC
-----------------------------------------------------------------------------------------
Total sequence length......................... 261694
Total number of repeats detected.............. 38
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 2 2 0 0 0 0 0 0 0 0 0 0 0
ATT 1 0 1 0 0 0 0 0 0 0 0 0 0
AGC 1 0 1 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TAC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 2 1 0 1 0 0 0 0 0 0 0 0 0
TGC 7 5 2 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 4 4 0 0 0 0 0 0 0 0 0 0 0
GCT 3 0 2 0 0 1 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 9 4 3 1 1 0 0 0 0 0 0 0 0
CTG 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 1 ATT + 0 TTA + 1 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
2 AAC + 0 ACA + 1 CAA + 0 GTT + 0 TTG + 2 TGT = 5
0 ATG + 1 TGA + 1 GAT + 0 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 1 TAC = 1
0 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 1
1 AGC + 4 GCA + 9 CAG + 3 GCT + 2 CTG + 7 TGC = 26
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
1 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7303588|gb|AE003826.1|AE003826 Drosophila melanogaster genomic scaffold 142000013386047 section 36 of 52, complete sequence
Position Repeat Coverage Repeat
7989 TTG * 7 19/21 TTG TTG TTA TTA TTG TTG TTG
8412 TGC * 7 19/21 TGC TGC TGT TGT TGC TGC TGC
8866 GCT * 7 19/21 GCT GCT GCT GTT GTT GCT GCT
11893 TTG * 7 20/21 TTG TTG TTG TTG TTG TGG TTG
13200 TGC * 7 20/21 TGC TGC TGC TGG TGC TGC TGC
15909 CTC * 7 19/21 CTC GTC CTC CTC CTC CGC CTC
36572 ACA * 7 19/21 ACA ACA ACG ACA ACA ACA TCA
83095 GCA * 11 31/33 GCA ACA GCA GCA GCA GCA GCA GCA GCA ACA GCA
83996 ACA * 8 22/24 ACA ACA ACA ACA ACA ACA ACA AAG
101494 ATA * 8 22/24 ATA ATA ATA ATA ATA ATA TTA TTA
102467 ACG * 8 22/24 ACG ACG ACG ACG ACG ACG CCG CCG
103755 TGC * 7 20/21 TGC TGC TGC TGG TGC TGC TGC
104276 CAT * 10 27/30 CAT CAT CAT CAA CAT CAC CAT CAT CAT CAC
104357 CAG * 7 19/21 CAG TGG CAG CAG CAG CAG CAG
139186 GCT * 10 27/30 GCT GCT GCT GCT GCT GCG GCC GCT GCT GCA
141304 TTA * 7 19/21 TTA TTT TTA TTA TTA TTA TTT
158707 CTG * 7 19/21 CTG GTG CTG TTG CTG CTG CTG
159152 TGC * 7 19/21 TGC TGC TGC TGC TGC TGT TGT
192392 TGG * 7 20/21 TGG TGG TGA TGG TGG TGG TGG
195223 CAC * 7 20/21 CAC CAC CAC CAT CAC CAC CAC
198029 GGC * 8 22/24 GGC GGC GGC GGC GGA GGC GGC GGA
201358 CTG * 17 47/51 CTG CTG CTG TTG CTG CTG CTG CTG TTG TTG CTG CTG CTG CTG CTG TTG CTG
201599 TGC * 8 22/24 TGC TGT TGC TGC TGC TGT TGC TGC
256799 GCT * 7 19/21 GCT GCT GCT GCT GCT GCT GGG
256824 CTG * 7 19/21 CTG CTG CTG TTG CTG TTG CTG
257431 TGC * 8 22/24 TGC TGC TGC TGT TGT TGC TGC TGC
257775 CTG * 7 19/21 CTG CAG TTG CTG CTG CTG CTG
258709 CTG * 8 23/24 CTG TTG CTG CTG CTG CTG CTG CTG
259214 TTA * 7 19/21 TTA TTG TTA TTA TTA TTA TTG
259314 TGC * 7 19/21 TGC TGC TGC TGT TGC TGT TGC
259354 TGC * 7 19/21 TGC TGC TGC TGT TGC TGC CGC
259579 TGC * 13 36/39 TGC TGC TGC TGC TGC TGC TGC TGC CGC TGC TGC TGT GGC
268761 TGC * 7 19/21 TGC TGC TGC TGC CGC CGC TGC
273412 CGT * 8 22/24 CGT CGT CGT CGT CGT CGC CGT CGC
274907 TGG * 11 31/33 TGG TGG TGG TGG TGG TGG TGG TGG TAA TGG TGG
282331 GTT * 12 34/36 GTT GTT GTT GTT GTT GTT GTT GTT GTT TTT GTA GTT
287218 AGC * 8 23/24 AGC AGC AGC AGC AGC AGC AGC AAC
289731 ACC * 7 19/21 ACC AAC ACC ACC ACC ACC CCC
-----------------------------------------------------------------------------------------
Total sequence length......................... 291089
Total number of repeats detected.............. 38
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 2 2 0 0 0 0 0 0 0 0 0 0 0
ACG 1 1 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 2 2 0 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGG 2 1 1 0 0 0 0 0 0 0 0 0 0
TGC 10 9 0 1 0 0 0 0 0 0 0 0 0
GTT 1 0 1 0 0 0 0 0 0 0 0 0 0
GGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 0 1 0 0 0 0 0 0 0 0 0 0
GCT 3 2 1 0 0 0 0 0 0 0 0 0 0
CAT 1 0 1 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 5 4 0 0 1 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CGT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 2 TTA + 0 TAT = 3
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 2 ACA + 0 CAA + 1 GTT + 2 TTG + 0 TGT = 5
0 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 1
1 AGC + 1 GCA + 1 CAG + 3 GCT + 5 CTG + 10 TGC = 21
1 ACG + 0 CGA + 0 GAC + 1 CGT + 0 GTC + 0 TCG = 2
1 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 2 TGG = 4
1 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7303570|gb|AE003825.1|AE003825 Drosophila melanogaster genomic scaffold 142000013386047 section 35 of 52, complete sequence
Position Repeat Coverage Repeat
5089 GGA * 7 21/21 GGA GGA GGA GGA GGA GGA GGA
22292 GAG * 7 20/21 GAG GAG GAG GAG GAG GAC GAG
22674 TGT * 13 36/39 TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGC TAT TGG
22855 TGT * 10 27/30 TGT GGT TGT TGT GGT TGT TGT TGT TGT GGT
22900 TGT * 14 38/42 TGT TGT CGT TGT TGT TGT TGT TGA TGT AGT TGT TGT TGT AGT
25972 TAA * 7 19/21 TAA TCA TAA TAA TAA TAA TTA
29131 ATG * 7 19/21 ATG ATT ACG ATG ATG ATG ATG
67098 CAA * 7 19/21 CAA CAA CAA AAG CAA CAA CAA
81996 GTT * 8 22/24 GTT GTT GTT CTT ATT GTT GTT GTT
94259 TTA * 7 19/21 TTA TTA TTA TTA TTA TTA TCC
101452 GCA * 7 19/21 GCA CCG GCA GCA GCA GCA GCA
101540 CAG * 7 19/21 CAG CGG CAG CAG CAG CAT CAG
101723 CAG * 7 19/21 CAG CAG CGG CAG CAA CAG CAG
101799 AGC * 10 27/30 AGC AGC AGC AGC AGC AGC CGC AGC AAC AAC
104486 CAG * 12 33/36 CAG CAG AAA CAG CAG CAG CAG CAG CAG CAG CAG CGG
134211 GCT * 7 19/21 GCT GCT GCT GCC GCT GCT TCT
136747 GTT * 7 19/21 GTT GTT GTT GTT GTT GTT GCA
141153 AAC * 7 19/21 AAC AAC AAG TAC AAC AAC AAC
142846 TTC * 7 19/21 TTC TGC TGC TTC TTC TTC TTC
149316 GAG * 7 19/21 GAG TAG AAG GAG GAG GAG GAG
150217 GTT * 7 19/21 GTT GTC ATT GTT GTT GTT GTT
150283 TTG * 7 19/21 TTG TTG TTC ATG TTG TTG TTG
150420 GTT * 7 20/21 GTT GTT GTT GTC GTT GTT GTT
157694 ACA * 8 22/24 ACA ACA ACA ACA GAA ACA ACA ACA
162606 CAA * 7 19/21 CAA CAA CAA CAA CAC CAA TAA
164064 GCA * 8 22/24 GCA ACA GCA GCA GCA GCA ACA GCA
164095 CAG * 8 22/24 CAG CAG CAG CAG CAA CAG CAA CAG
172695 CTC * 8 22/24 CTC CTC CTC CTC CTT CTC CTT CTC
219886 CAG * 11 30/33 CAG CAA CAG CAG CAG CAG CAA CAG CAG CAG CAA
220027 GCT * 7 19/21 GCT GCT GCA GCT GCT GCT GCG
220213 GAG * 8 22/24 GAG GAG GAG GAG GCG GAG GAG GAT
234118 TCA * 7 19/21 TCA TCA TCA GCA TCA ACA TCA
234143 CAG * 7 20/21 CAG CAG CAG CAG CAG GAG CAG
247716 ATC * 7 19/21 ATC ATC ATC TTC ATC ATC TTC
265573 GTT * 8 22/24 GTT GTT GTT GTT GTA GTT GCT GTT
-----------------------------------------------------------------------------------------
Total sequence length......................... 278196
Total number of repeats detected.............. 35
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 0 1 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TTC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 3 0 1 2 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 3 3 0 0 0 0 0 0 0 0 0 0 0
GTT 5 5 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 6 4 2 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 0 ATT + 1 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 1 TTC + 0 TCT = 1
1 AAC + 1 ACA + 2 CAA + 5 GTT + 1 TTG + 3 TGT = 13
1 ATG + 0 TGA + 0 GAT + 0 CAT + 1 ATC + 1 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 3 GAG + 0 CCT + 1 CTC + 0 TCC = 5
1 AGC + 2 GCA + 6 CAG + 2 GCT + 0 CTG + 0 TGC = 11
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7303542|gb|AE003824.1|AE003824 Drosophila melanogaster genomic scaffold 142000013386047 section 34 of 52, complete sequence
Position Repeat Coverage Repeat
1198 CTG * 7 19/21 CTG CTG CTC CTG CTG CTC CTG
30552 GCT * 7 19/21 GCT GCT GCT GTT GTT GCT GCT
30575 TGC * 7 20/21 TGC GGC TGC TGC TGC TGC TGC
31746 TGT * 8 22/24 TGT GGT TGT TGT TGT TGT TGA TGT
39293 GCC * 7 19/21 GCC GCC GAC GCC GCA GCC GCC
41783 GCT * 7 20/21 GCT GCT GCT GCT GCT GCT GCA
54720 CTT * 10 29/30 CTT CTT CTC CTT CTT CTT CTT CTT CTT CTT
85968 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC GGC AGC
86831 TCA * 7 19/21 TCA TCA TCA TCA TCT TCC TCA
87476 CAG * 12 33/36 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CTG AAA
89563 CAA * 7 19/21 CAA TAT CAA CAA CAA CAA CAA
130106 TAT * 7 19/21 TAT TGT TAT TAT TAT TAT TTT
161431 GCA * 7 19/21 GCA GCA TCA GCA GCA GCA GCT
166224 ACA * 12 33/36 ACA ACA ACA ACA ACA ACA ATA ATA ACA ACA ACA ACG
178087 CAC * 7 20/21 CAC CAC CAC CAC CAC CAC CAA
185531 TGC * 7 19/21 TGC TGC TGC TGC TGC TGC TAA
185635 CTG * 8 22/24 CTG CTG CCG CTG CTG CTG CTG CTA
185687 TGC * 8 23/24 TGC TGC TGC TGC TAC TGC TGC TGC
186148 TTA * 7 19/21 TTA TTA TTA TTA TTA TTA TGG
189148 GAG * 7 19/21 GAG GAG GAG GAG CGG GAG GAG
206110 AGC * 9 25/27 AGC AGC AGC AGC AGC AGC AGC AGC GAC
239779 AAG * 8 22/24 AAG AAG AAG AAG AGG AAG AGG AAG
241204 ACA * 7 19/21 ACA ACA ACA ACA ACG ACA GCA
-----------------------------------------------------------------------------------------
Total sequence length......................... 249001
Total number of repeats detected.............. 23
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 2 1 1 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 4 4 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 0 1 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTT 1 0 1 0 0 0 0 0 0 0 0 0 0
CTG 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 1 TAT = 2
1 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 2
0 AAC + 2 ACA + 1 CAA + 0 GTT + 0 TTG + 1 TGT = 4
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 1 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 1
1 AGC + 1 GCA + 1 CAG + 2 GCT + 2 CTG + 4 TGC = 11
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7303489|gb|AE003823.1|AE003823 Drosophila melanogaster genomic scaffold 142000013386047 section 33 of 52, complete sequence
Position Repeat Coverage Repeat
5555 GGT * 7 19/21 GGT GGG GTT GGT GGT GGT GGT
24804 TGA * 9 25/27 TGA TGA TTA TGA TGA TGA TGA TGG TGA
32982 GGT * 7 19/21 GGT GGC GGT GGT GGT GAT GGT
57260 CAG * 8 22/24 CAG CAG CAG CAA CAG CAG CAG CAA
57285 AGC * 9 25/27 AGC AGC AGC AGC AAC AGC AGC TGC AGC
111014 GCA * 7 19/21 GCA GCA GCA GCA GCA GGA GAA
133035 TCA * 7 19/21 TCA TCA TCA TCT TCA TCA TCG
133059 TCA * 7 20/21 TCA TCA TCA TCA TCA TCA TGA
134828 TAC * 7 20/21 TAC TAC TAC TAC TAC TAC TGC
139834 AGC * 7 19/21 AGC AGC AGT AGC AGT AGC AGC
141242 GCA * 8 22/24 GCA GCA GCA GCA GCA CCA ACA GCA
149626 TAT * 7 19/21 TAT TAT TAT TAT TAT TAT TTC
155169 TGC * 8 23/24 TGC CGC TGC TGC TGC TGC TGC TGC
162958 TTG * 10 28/30 TTG CTG TTG TTG TTA TTG TTG TTG TTG TTG
185972 TGA * 7 19/21 TGA TGA TGG TGA TGA TGA TGT
191620 CAT * 7 19/21 CAT CAG CAT CAG CAT CAT CAT
206025 CTG * 10 27/30 CTG CTG CTG CTG CTG CTG CTG CGG CGG CGG
206338 ATA * 8 22/24 ATA GTA ATG ATA ATA ATA ATA ATA
215615 TGC * 7 19/21 TGC TGA TGC TGC TTC TGC TGC
239917 GTC * 10 27/30 GTC ATC GTC GTC ATC GTC GTC GTC GTC GTA
-----------------------------------------------------------------------------------------
Total sequence length......................... 262740
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TAC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 0 1 0 0 0 0 0 0 0 0 0 0
TGA 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TCA 2 2 0 0 0 0 0 0 0 0 0 0 0
GTC 1 0 1 0 0 0 0 0 0 0 0 0 0
GGT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 1 TTG + 0 TGT = 1
0 ATG + 2 TGA + 0 GAT + 1 CAT + 0 ATC + 2 TCA = 5
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 1 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
2 AGC + 2 GCA + 1 CAG + 0 GCT + 1 CTG + 2 TGC = 8
0 ACG + 0 CGA + 0 GAC + 0 CGT + 1 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 2 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7303437|gb|AE003822.1|AE003822 Drosophila melanogaster genomic scaffold 142000013386047 section 32 of 52, complete sequence
Position Repeat Coverage Repeat
20348 CAG * 11 30/33 CAG CGG CAG CAG CAG TAG CAG CAG CAG CGG CAG
26336 TAT * 8 22/24 TAT TAT TAT TAT TAT TAT TGT GAT
30800 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC TGT TGT
39190 ACA * 8 22/24 ACA ACA ACA ACA ACA ACA ACA TCG
46602 TGA * 8 22/24 TGA TGA TAA TGA TGA TGA GGA TGA
55907 TCA * 11 30/33 TCA TCA TCA TCA TCA TCA TCA TCA TCG TCG TCG
56155 CTC * 9 26/27 CTC CTC ATC CTC CTC CTC CTC CTC CTC
83716 ACG * 8 23/24 ACG ACG ACA ACG ACG ACG ACG ACG
136435 GTG * 8 22/24 GTG GTG GTG GTG GTG GTG GTC GAG
146596 CCA * 7 19/21 CCA CCT TCA CCA CCA CCA CCA
182265 TAT * 7 19/21 TAT TAT TCT TAT TAT TAA TAT
192050 CTG * 10 27/30 CTG CTG TTG TTG CTG CTG CTG CTG CTG ATG
201402 GAG * 7 19/21 GAG GAT GAG GAC GAG GAG GAG
229888 TGC * 7 20/21 TGC TGC TGC AGC TGC TGC TGC
229936 TGC * 7 19/21 TGC TGC TGC GTC TGC TGC TGC
238119 AGG * 8 23/24 AGG AGG AGG AGC AGG AGG AGG AGG
245542 GCA * 8 22/24 GCA GCA GCA GCA GCA GCA GCA GTC
259291 GCA * 8 22/24 GCA ACA GCA GCA GCA GCA GCA ACA
265253 GCT * 7 19/21 GCT GCG GCT ACT GCT GCT GCT
-----------------------------------------------------------------------------------------
Total sequence length......................... 266350
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
ACG 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 2 2 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 3 3 0 0 0 0 0 0 0 0 0 0 0
TCA 1 0 1 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 0 1 0 0 0 0 0 0 0 0 0 0
CTG 1 0 1 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 2 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 1 TGA + 0 GAT + 0 CAT + 0 ATC + 1 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 1 GAG + 0 CCT + 1 CTC + 0 TCC = 3
0 AGC + 2 GCA + 1 CAG + 1 GCT + 1 CTG + 3 TGC = 8
1 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 1 CCA + 0 CAC + 0 GGT + 1 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7303396|gb|AE003821.1|AE003821 Drosophila melanogaster genomic scaffold 142000013386047 section 31 of 52, complete sequence
Position Repeat Coverage Repeat
9864 ATA * 7 19/21 ATA ATA AAA ACA ATA ATA ATA
23050 TGT * 9 25/27 TGT TGC TGT TGT TGT TGT TGT TGT TGC
30296 TGC * 7 20/21 TGC TGC TGC TGT TGC TGC TGC
32196 GAA * 7 19/21 GAA GAA GAA GAA GGA GAA GCA
38664 CTG * 8 22/24 CTG CCG CTG TTG CTG CTG CTG CTG
50866 GGT * 7 19/21 GGT GGT GGT GGT GGT GGA GTT
65356 GCT * 7 19/21 GCT GCT GCT GCT GTT GCT GTT
68491 TAT * 7 19/21 TAT TAT TAT CAT TAT CAT TAT
73809 GAT * 12 34/36 GAT GAT GAT GAT GAT GAT GAT GAT GAT TAA GAT GAT
87281 GGC * 7 19/21 GGC GGC GGC GGC GGC GGC TCC
116009 ATA * 7 20/21 ATA TTA ATA ATA ATA ATA ATA
178430 CTC * 7 19/21 CTC CTC ATC CTC CTC CTG CTC
201986 TGT * 7 19/21 TGT TGT TGT TGT TGT TCT TGG
202113 ACG * 7 20/21 ACG ACG ACA ACG ACG ACG ACG
228825 TCT * 7 19/21 TCT TCT TCT TCT TAT TCT TGT
231375 AGC * 7 19/21 AGC AGC GGC CGC AGC AGC AGC
237412 CCA * 11 30/33 CCA CCA CCA CCA CCA CCA CCA CCA CTA CTA CTA
239035 TAA * 11 30/33 TAA TAA CAA CAA TAA TAA TAA TAA TAA TAA CAA
266721 ATC * 9 25/27 ATC ATC GTC ATC ATC ATC ATC TTC ATC
267037 ATG * 10 27/30 ATG ATG GCG ATG ATG ATG ATG ATG ATG ATA
267860 CGA * 7 20/21 CGA CGA CGA CGA CGA CGA CGG
273362 AAT * 11 30/33 AAT AAT AAT AAT AAT ACA AAT AAT AAT ATT AAT
282731 TTG * 10 27/30 TTG TTG TTG TTG TTG TTG TTC TTG TTT TGG
-----------------------------------------------------------------------------------------
Total sequence length......................... 290711
Total number of repeats detected.............. 23
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 0 1 0 0 0 0 0 0 0 0 0 0
ATA 2 2 0 0 0 0 0 0 0 0 0 0 0
ATG 1 0 1 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACG 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 0 1 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 0 1 0 0 0 0 0 0 0 0 0 0
TGT 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 0 1 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CGA 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 2 ATA + 1 TAA + 0 ATT + 0 TTA + 1 TAT = 5
0 AAG + 0 AGA + 1 GAA + 0 CTT + 0 TTC + 1 TCT = 2
0 AAC + 0 ACA + 0 CAA + 0 GTT + 1 TTG + 2 TGT = 3
1 ATG + 0 TGA + 1 GAT + 0 CAT + 1 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 1
1 AGC + 0 GCA + 0 CAG + 1 GCT + 1 CTG + 1 TGC = 4
1 ACG + 1 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 2
0 ACC + 1 CCA + 0 CAC + 1 GGT + 0 GTG + 0 TGG = 2
1 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7303370|gb|AE003820.1|AE003820 Drosophila melanogaster genomic scaffold 142000013386047 section 30 of 52, complete sequence
Position Repeat Coverage Repeat
15931 CAA * 7 19/21 CAA CAA CAA CAA CGA CAG CAA
34822 GCA * 8 22/24 GCA GCA ACA GCA GCA GCG GCA GCA
51775 GGT * 8 22/24 GGT GGT GGT GGT GGC GGT GGT GGG
63438 ACA * 12 33/36 ACA AAA GCA ACA ACA ACA ACA ACA ACA ACA ACT ACA
76557 AAC * 10 27/30 AAC AAC TAT AAC AAC AAC AAC AAC AAC ATC
80896 GCA * 7 19/21 GCA GCA TTA GCA GCA GCA GCA
91819 GCT * 8 22/24 GCT GCT GCT GCT GCT GCT GCT TGT
92276 TTA * 8 22/24 TTA TTG TTA TTA TTA TTA TTA TTG
92300 TTG * 14 38/42 TTG TTA TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG CCA
93682 CTG * 10 27/30 CTG TTG CTG TTG CTG CTG CTG CTG CTG TTG
93719 TGT * 8 22/24 TGT TGT TGT GGT TGT TGT TGT TGC
93743 TGC * 7 20/21 TGC TGC TGC TGC TGC TGC TGT
96796 CAT * 8 22/24 CAT CAC CAT CAT CGT CAT CAT CAT
113162 AAT * 8 23/24 AAT AAT AAT CAT AAT AAT AAT AAT
115342 ATA * 7 20/21 ATA ATA ATA ATA ATA ATA AAA
117908 AAC * 10 27/30 AAC AAC AAC AAC AAC AAC ACC ACC AAC GAC
117952 CAG * 7 19/21 CAG CAG CAG CAG CAG CAG AGG
118099 CAA * 8 22/24 CAA CAA CCA CAA CAA CAA CAG CAA
118233 TCC * 7 19/21 TCC TCC TCC TCG TCC TCC TCA
130521 TAG * 7 21/21 TAG TAG TAG TAG TAG TAG TAG
136135 TTG * 8 22/24 TTG TTG TTG TTG TCG TTG TTG CTG
136974 GCA * 7 20/21 GCA GCA GCA GCA ACA GCA GCA
146522 CCA * 8 22/24 CCA CGA CCA CCA CCA CCA CCA CCG
166787 CTG * 11 30/33 CTG CTG CTG GTG CTG CTG GTG CTG CTG CTG GTG
169576 GCA * 8 23/24 GCA GCA GCA GCA GCA GCA GCA GAA
180266 TAT * 8 22/24 TAT TAT TAC TAA TAT TAT TAT TAT
250143 GCT * 7 19/21 GCT GTT GCT GCT GCT GAT GCT
271955 CAA * 8 22/24 CAA CAA CAA CAA CAA CAA CAA CTG
-----------------------------------------------------------------------------------------
Total sequence length......................... 272870
Total number of repeats detected.............. 28
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 2 0 2 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 0 1 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TAG 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 2 1 0 1 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 4 4 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 3 3 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 2 0 2 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 1 ATA + 0 TAA + 0 ATT + 1 TTA + 1 TAT = 4
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
2 AAC + 1 ACA + 3 CAA + 0 GTT + 2 TTG + 1 TGT = 9
0 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 1 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 1 TCC = 1
0 AGC + 4 GCA + 1 CAG + 2 GCT + 2 CTG + 1 TGC = 10
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 1 CCA + 0 CAC + 1 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7303326|gb|AE003819.1|AE003819 Drosophila melanogaster genomic scaffold 142000013386047 section 29 of 52, complete sequence
Position Repeat Coverage Repeat
4986 ACA * 9 25/27 ACA ACA ACA ACA ACA ACA ACA GCA TCA
14502 AGC * 10 28/30 AGC TGC AGC AGC AGC AGC AGC AGC AGC ATC
17612 CAA * 7 20/21 CAA CAA CAA CAG CAA CAA CAA
21711 TCA * 8 22/24 TCA TCA TCA TCA CCA TCA TCC TCA
21760 CAT * 7 19/21 CAT CAG CAT CAT CGT CAT CAT
28456 GAT * 11 31/33 GAT GAT GAT GAT GAT GAT GAC GAT GAC GAT GAT
42308 GCA * 8 22/24 GCA GCA GCA GCA GCA GCA GCA CAA
58975 GCA * 10 27/30 GCA GCA GCA GCA GCA GCA GTA GGA GCA GGA
104839 GAC * 8 22/24 GAC CAC GAC CAC GAC GAC GAC GAC
140888 ACA * 10 27/30 ACA ACT ACA ACA AGA ACA ACA ACA ACA ACG
141219 GTT * 10 28/30 GTT GTT GTT GTT GTT GTT GTT GTT GCT GCT
148078 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CAA
148212 GCA * 12 33/36 GCA GCA GCA GCA ACA GCA GCA GCA GCA GCA ACA GAA
149892 ACA * 8 22/24 ACA GCA ACA ACA ACA ACA ACA GCA
149916 GCA * 8 22/24 GCA GCA GCA GCA GCA ACA ACA GCA
151042 CAG * 7 19/21 CAG CAA CAG CAG CAG CAA CAG
151455 GCA * 7 19/21 GCA GCA GCA GCA ACA GCA GCC
151577 AGC * 10 28/30 AGC AGC AGC AGC AAC AAC AGC AGC AGC AGC
151789 CAG * 8 22/24 CAG CAG CAC CAC CAG CAG CAG CAG
154010 CAA * 7 20/21 CAA CAA CAA CAA CAA CAA CAG
154494 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CGG CGG
155530 CAG * 17 47/51 CAG CAG CAG CAG CAG CAG CAG CAA CAG CAG CAG CAG CAA CAA CAG CAA CAG
155581 GCT * 7 20/21 GCT GCC GCT GCT GCT GCT GCT
169207 GAG * 7 19/21 GAG GAG GTG GAG GCG GAG GAG
-----------------------------------------------------------------------------------------
Total sequence length......................... 237528
Total number of repeats detected.............. 24
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGC 2 0 2 0 0 0 0 0 0 0 0 0 0
ACA 3 2 1 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 0 1 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 5 3 2 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 5 4 0 0 1 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 3 ACA + 2 CAA + 1 GTT + 0 TTG + 0 TGT = 6
0 ATG + 0 TGA + 1 GAT + 1 CAT + 0 ATC + 1 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 1
2 AGC + 5 GCA + 5 CAG + 1 GCT + 0 CTG + 0 TGC = 13
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7303288|gb|AE003818.1|AE003818 Drosophila melanogaster genomic scaffold 142000013386047 section 28 of 52, complete sequence
Position Repeat Coverage Repeat
2333 GCA * 8 22/24 GCA GCA GCA GCA GCA ACA GCA ACA
2373 CAG * 19 52/57 CAG CAG CAG CAG CAG CAG CAA CAT CAG CAG CAG CAT CAG CAG CAG CAG CAA CAC CAG
2724 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAC AAG
15521 TGC * 9 25/27 TGC TGC TGC TGC TGC TGC TTT TGC TGC
17309 GCT * 7 20/21 GCT GCT GCT GCT GGT GCT GCT
17342 GCT * 11 31/33 GCT GCT GCC GCT GCT GCT GCT GCT GCT GCT TCT
36679 GTG * 8 22/24 GTG GTT GTG GTC GTG GTG GTG GTG
42657 CAT * 7 19/21 CAT CAG CAT CAT TAT CAT CAT
92864 TGC * 8 22/24 TGC TGC TGC TGC CGC TGC TGC TGA
100847 ATT * 7 19/21 ATT ATT ATA GTT ATT ATT ATT
119785 GTG * 7 19/21 GTG GCT GTG GTG GTG GTG GTG
121275 TTC * 7 19/21 TTC TTC TTC TTC TTC TTC TGT
124592 TGC * 11 30/33 TGC TGC TGC TGC TGC TGC TGC TGT TGC TGT TCC
131385 CCT * 12 34/36 CCT CCT CCT ACT CCT CCT CCT CCT CCT CCT CCT CCC
144568 CTG * 8 22/24 CTG ATG CTG CTG CTG CTG CTG TTG
146100 CAA * 7 19/21 CAA GAA CAA CAA CAA CAA CAG
193995 GCA * 7 19/21 GCA CCA GCA GCA TCA GCA GCA
195526 CAG * 7 20/21 CAG CAG CAG CCG CAG CAG CAG
195604 CAG * 8 22/24 CAG CAG CAA CAG CAG CAA CAG CAG
220322 TGT * 7 20/21 TGT TGT TGT TGT TGT TGT TGC
222843 TGC * 8 22/24 TGC TGC TGC TAC TGC TGC CGC TGC
223052 ACA * 8 23/24 ACA ACA ACA ACT ACA ACA ACA ACA
224069 GTG * 14 38/42 GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG TAG GTG GAC
224704 CTG * 8 22/24 CTG ATG ATG CTG CTG CTG CTG CTG
225050 ACC * 8 22/24 ACC ACC ACC ACC ACC ACC ATC CCC
229522 AGC * 7 21/21 AGC AGC AGC AGC AGC AGC AGC
233788 CGT * 12 33/36 CGT CCT CGT CGT CGT CGT CGT CGT CGT CAT GGT CGT
235577 GCT * 8 22/24 GCT GCT GCT GCT GCA GCT TCT GCT
251308 CGT * 10 27/30 CGT CGT CGT CGT CGT CGT CGT CAT CGT TGC
255553 AGA * 7 19/21 AGA AGG AGA AGA AGA AGC AGA
259359 TGC * 8 22/24 TGC TGC TCC TGC CGC TGC TGC TGC
260867 GCA * 7 19/21 GCA GCC GCA GCA GCG GCA GCA
-----------------------------------------------------------------------------------------
Total sequence length......................... 264644
Total number of repeats detected.............. 32
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGA 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 5 4 1 0 0 0 0 0 0 0 0 0 0
GTG 3 2 0 1 0 0 0 0 0 0 0 0 0
GCA 3 3 0 0 0 0 0 0 0 0 0 0 0
GCT 3 2 1 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 4 3 0 0 0 1 0 0 0 0 0 0 0
CTG 2 2 0 0 0 0 0 0 0 0 0 0 0
CGT 2 0 2 0 0 0 0 0 0 0 0 0 0
CCT 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 1 ATT + 0 TTA + 0 TAT = 1
0 AAG + 1 AGA + 0 GAA + 0 CTT + 1 TTC + 0 TCT = 2
0 AAC + 1 ACA + 1 CAA + 0 GTT + 0 TTG + 1 TGT = 3
0 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 1 CCT + 0 CTC + 0 TCC = 1
1 AGC + 3 GCA + 4 CAG + 3 GCT + 2 CTG + 5 TGC = 18
0 ACG + 0 CGA + 0 GAC + 2 CGT + 0 GTC + 0 TCG = 2
1 ACC + 0 CCA + 0 CAC + 0 GGT + 3 GTG + 0 TGG = 4
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7303263|gb|AE003817.1|AE003817 Drosophila melanogaster genomic scaffold 142000013386047 section 27 of 52, complete sequence
Position Repeat Coverage Repeat
31801 CAA * 8 23/24 CAA CAA CAA CAA CAA CAA CAG CAA
32065 CAG * 11 30/33 CAG GAG CAG CAG CAG CAG CAG CAG CAA CAG CAA
32103 GCA * 11 30/33 GCA GCA GCA GCA ACA ACA GCA GCA GCA GCA ACA
44868 AGT * 10 28/30 AGT AGT AGT AGT AGT AGT AGT AGT AGT ATA
47493 AAT * 7 20/21 AAT AAT AAA AAT AAT AAT AAT
58208 TCA * 7 19/21 TCA TCA TCA TCA TCA GCA GCA
58229 GCA * 7 19/21 GCA GCA GCA GCA GCA CCA TCA
60277 TGA * 7 20/21 TGA TTA TGA TGA TGA TGA TGA
63608 TGC * 9 25/27 TGC TGC TGC CGC TGC TGC TGT TGC TGC
67291 GAT * 7 19/21 GAT GAT GGT GCT GAT GAT GAT
87758 GTC * 7 19/21 GTC ATC GTC GTC GTT GTC GTC
100728 TGG * 9 26/27 TGG TGG TGG TGG TGG TGG TGG TGG TGT
119450 GCA * 7 19/21 GCA GCA CCA GCA GCA GCG GCA
148684 TCC * 8 22/24 TCC TCC TCC TCC TCC GCC TCC TCG
234263 TGT * 7 19/21 TGT TGT TAT TGT TGT TGT TGC
234378 TGC * 13 36/39 TGC TGC TGC TGC TGC TGC TGC TGA TGC TGC TGC ATC TGC
239582 TCA * 7 20/21 TCA TCA TCA TCA TAA TCA TCA
245997 GTT * 8 22/24 GTT CTT GTT GTT GTT GTT GCT GTT
249541 TAC * 8 22/24 TAC TAC TAC TAC TAC TAC CAC CAC
252976 GGT * 7 19/21 GGT GGT GGT GGT GAT GGT GGC
255669 GCT * 7 19/21 GCT GCT ACT GCT GCT GCT GTT
-----------------------------------------------------------------------------------------
Total sequence length......................... 262257
Total number of repeats detected.............. 21
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGT 1 0 1 0 0 0 0 0 0 0 0 0 0
TAC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 1 0 1 0 0 0 0 0 0 0 0 0
TCA 2 2 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTC 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 3 2 1 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 1 CAA + 1 GTT + 0 TTG + 1 TGT = 3
0 ATG + 1 TGA + 1 GAT + 0 CAT + 0 ATC + 2 TCA = 4
1 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 1 TAC = 2
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 1 TCC = 1
0 AGC + 3 GCA + 1 CAG + 1 GCT + 0 CTG + 2 TGC = 7
0 ACG + 0 CGA + 0 GAC + 0 CGT + 1 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 1 GGT + 0 GTG + 1 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7303233|gb|AE003816.1|AE003816 Drosophila melanogaster genomic scaffold 142000013386047 section 26 of 52, complete sequence
Position Repeat Coverage Repeat
15384 AGC * 7 19/21 AGC AGC AAC AAC AGC AGC AGC
15440 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CAA
25022 TAT * 7 19/21 TAT CAT TAT TAT TAC TAT TAT
39050 CTT * 7 19/21 CTT GTT CTT GTT CTT CTT CTT
49351 CAG * 7 20/21 CAG CAG CTG CAG CAG CAG CAG
50518 CAG * 7 19/21 CAG CAG CAG CAG CAA CAG CAT
53978 GCA * 12 33/36 GCA ACA GCA GCA GCA GCA GCA GCA GCA GCA ACA ACA
54249 CAG * 11 30/33 CAG CAG CAA CAG CAG CAG CAG CAT CAG CAG CAA
59336 TGC * 12 33/36 TGC TGC TGC TGC TGC TGC TGT TGC TGC TGC TGT TGG
60831 TGC * 7 19/21 TGC GGC TGT TGC TGC TGC TGC
60880 GCT * 7 19/21 GCT GTT GCT GCT GCT GTT GCT
67261 CAA * 11 31/33 CAA CAA CAA CAA CAA CAA CAA CAA CAA CGA CAG
76302 CTG * 8 22/24 CTG CTG CTG CTG CTG TTG CTG TTG
76327 TGC * 14 39/42 TGC TGC TGC TGC TGC TGC TGC TGC TGC AGT TGC TGC TGC GGC
76421 GCT * 7 19/21 GCT GCT GCT GCT GCT GTT GTT
76453 TGC * 7 20/21 TGC TGC TGC TGC TGC TGT TGC
76624 TGC * 8 22/24 TGC TGC TGC GGC TGC TGT TGC TGC
76780 TGC * 8 22/24 TGC TGC TGT TGT TGC TGC TGC TGC
77551 TGC * 8 22/24 TGC TGC TGC TGC TGG TGC TGT TGC
85035 GCT * 11 31/33 GCT GCT GCT GCT GCT GCT GAT GCT GCT GCT GGT
85162 GCA * 8 22/24 GCA GCG GCA GCA GCA GCA GCA ACA
85336 GCT * 7 20/21 GCT GCT GCT GCT GCT GCT GTT
86464 TGC * 10 27/30 TGC TGC TGC TGC TGC TGC TGC TGT TGC CGT
89680 ACA * 8 22/24 ACA GCA GCA ACA ACA ACA ACA ACA
91283 ACA * 10 27/30 ACA ACG GCA ACA ACA ACA ACA ACA ACA AAA
98026 CGG * 8 22/24 CGG CGG CGG CGG CGG CGG CGG CAA
103223 CAA * 8 22/24 CAA CAA CAA CAA CAA TAA CAA CAG
105639 TGC * 10 27/30 TGC TGG TGC TGC TGA TGC TGC TGC TGC TGT
105672 TGC * 8 23/24 TGC TGC TGC TGC TGA TGC TGC TGC
106029 TGC * 7 19/21 TGC TGC TGC TGC TGT TGT TGC
106122 TGC * 7 19/21 TGC AGC TGC TGT TGC TGC TGC
106191 TGC * 11 31/33 TGC TGC TGC TGC TGC TGC TGT TGC TGC TGC TGG
106459 GCT * 11 30/33 GCT GCT GCT GCT GCT GCT GCT GCT GCT GTT TCC
111856 CAG * 14 38/42 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAA CAG CAG CAA CTT
115768 GTT * 9 25/27 GTT GTT ATT GTT GTT GTT GCT GTT GTT
115843 TGT * 8 22/24 TGT TGT TGT TGT TGT TGT TGC TGC
116017 GCA * 10 27/30 GCA GCA GCA ACA ACA GCA GCA GCA GCA TCA
117164 TAA * 7 20/21 TAA TAA TAA TAA TAA TAA AAA
120994 CTG * 10 27/30 CTG TTG TTG CTG CTG CTG CTG CTG CTG CGG
135926 AGC * 7 19/21 AGC AGC AGC AGC ATC GGC AGC
152084 TGG * 10 27/30 TGG TGG TGG TGG TGG TGA TGG TGG TGG TCC
157420 GCA * 7 20/21 GCA GCA GCC GCA GCA GCA GCA
160865 CAG * 8 22/24 CAG CAG CCG CTG CAG CAG CAG CAG
163215 AAT * 8 23/24 AAT AAT AAT AAT AAT AAT AAT CAT
163500 CAA * 8 22/24 CAA CAA CAA ATA CAA CAA CAA CAA
175333 AGA * 7 19/21 AGA AGA AGA AGA AGA GGA TGA
191787 GTT * 7 19/21 GTT CTT GTT ATT GTT GTT GTT
194998 CAT * 7 19/21 CAT CAT CAT CAT CAT CAT CGC
247151 AAT * 7 20/21 AAT AAT AAT AAT AAT AAT ATT
251711 TAC * 7 20/21 TAC TAC TAC TAC TAA TAC TAC
252744 CTC * 8 22/24 CTC CTC CTC CTC CTC CTC CTT CTA
-----------------------------------------------------------------------------------------
Total sequence length......................... 260779
Total number of repeats detected.............. 51
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 2 2 0 0 0 0 0 0 0 0 0 0 0
AGA 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 2 0 0 0 0 0 0 0 0 0 0 0
ACA 2 1 1 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TAC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 13 8 4 1 0 0 0 0 0 0 0 0 0
GTT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCA 4 2 2 0 0 0 0 0 0 0 0 0 0
GCT 5 3 2 0 0 0 0 0 0 0 0 0 0
CAA 3 2 1 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 6 4 1 1 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 2 1 1 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CGG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
2 AAT + 0 ATA + 1 TAA + 0 ATT + 0 TTA + 1 TAT = 4
0 AAG + 1 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 2
0 AAC + 2 ACA + 3 CAA + 2 GTT + 0 TTG + 1 TGT = 8
0 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 1 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 1
2 AGC + 4 GCA + 6 CAG + 5 GCT + 2 CTG + 13 TGC = 32
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 1 TGG = 1
0 GGC + 0 GCG + 1 CGG + 0 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7303189|gb|AE003815.1|AE003815 Drosophila melanogaster genomic scaffold 142000013386047 section 25 of 52, complete sequence
Position Repeat Coverage Repeat
10073 ACG * 7 19/21 ACG ACG AGG ACG ACG ACG ACA
15876 CTC * 8 23/24 CTC CTC CTG CTC CTC CTC CTC CTC
19040 TGC * 7 19/21 TGC CGC TGC TGC TGC TGC TGG
19212 TGC * 11 31/33 TGC TGC TGC TGT TGC TGC TGC TGC TGC TGC AGC
19588 CAG * 7 19/21 CAG ACG CAG CAG CAG CAG CAG
19906 CTG * 12 33/36 CTG TTG CTG CTG TTG CTG CTG CTG CTG CTG CTA CTG
23032 ATG * 8 22/24 ATG ATG ATG ATG ATG ATG ATG GTC
23218 ATA * 8 22/24 ATA ACA ATA ATA ATA ATA ATA ACA
38234 CTG * 8 24/24 CTG CTG CTG CTG CTG CTG CTG CTG
39164 TGT * 8 22/24 TGT TGT TGT TGT TGT TGT TGG TGG
47127 TGC * 7 19/21 TGC TGC TGT AGC TGC TGC TGC
47151 TGC * 10 27/30 TGC TGC TGC TGC TGT TGC TGT TGC TGC TGT
55702 GAC * 7 19/21 GAC GAC GAC GAC GAC GAC AAT
80308 TGC * 9 25/27 TGC TGC TGC TGC TGT TGC TGT TGC TGC
80476 TGC * 7 19/21 TGC CGC TGC TGT TGC TGC TGC
85882 CAA * 7 19/21 CAA CAA CAT CAA CAA CAA TAA
89440 TGG * 7 20/21 TGG TAG TGG TGG TGG TGG TGG
90025 GCT * 7 19/21 GCT GCT GCT GCT GCG ACT GCT
90047 CTG * 9 25/27 CTG CTG CTG CGA CTG CTG CTG CTG CTG
115936 CTT * 7 19/21 CTT CTT CTT TTT CTT TTT CTT
140351 CCA * 7 19/21 CCA CGA CCA CCT CCA CCA CCA
145320 GCT * 7 20/21 GCT GCT GCT GCT GCT GCT GCG
146386 CAG * 8 22/24 CAG CCG CAG TAG CAG CAG CAG CAG
146743 TGA * 7 19/21 TGA TGA TGA TGA TGA TGA AGG
153607 GCT * 7 19/21 GCT GCT GCT GCT GCC GCT GCC
154730 CAA * 8 23/24 CAA CAA CAA CAA CAA CAA CAC CAA
154790 AAC * 8 22/24 AAC AAC AGC AAC AAC TAC AAC AAC
157913 GAT * 7 19/21 GAT GGT GAT GAT GAT GAT GAC
177734 TGC * 7 19/21 TGC TTG TGC TGC TGC TGC TGC
184628 TGC * 7 19/21 TGC TGC TGC TGT TGC TGC TGT
222602 CAA * 7 19/21 CAA CAA CAA CAA CAG CAA CAG
237724 TGC * 8 22/24 TGC TGC TGC GGC TGC TGC TGC TGA
-----------------------------------------------------------------------------------------
Total sequence length......................... 240495
Total number of repeats detected.............. 32
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
ACG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 9 7 2 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 3 3 0 0 0 0 0 0 0 0 0 0 0
CAA 3 3 0 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 3 2 1 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 1
1 AAC + 0 ACA + 3 CAA + 0 GTT + 0 TTG + 1 TGT = 5
1 ATG + 1 TGA + 1 GAT + 0 CAT + 0 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 1
0 AGC + 0 GCA + 2 CAG + 3 GCT + 3 CTG + 9 TGC = 17
1 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 2
0 ACC + 1 CCA + 0 CAC + 0 GGT + 0 GTG + 1 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7303162|gb|AE003814.1|AE003814 Drosophila melanogaster genomic scaffold 142000013386047 section 24 of 52, complete sequence
Position Repeat Coverage Repeat
77028 ATA * 8 22/24 ATA ATA ATA ATA ATA ATA ATA TAA
79559 CAT * 8 22/24 CAT CAT CAT CAT CAT CAC CAT TAT
111445 CTG * 8 22/24 CTG CTG CTG TTG CTG CTG CTC CTG
115720 CCA * 7 19/21 CCA CCA TCA CCT CCA CCA CCA
117406 GTT * 8 22/24 GTT GTT GTT TGT GTT GTT GTT GTT
121423 TAG * 11 30/33 TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG ATA
125590 GCT * 8 22/24 GCT GCT GAT GTT GCT GCT GCT GCT
127111 TGC * 8 22/24 TGC TGC TGC TGC TGC TGA TGT TGC
127225 TGC * 8 22/24 TGC TGT TGC TGC TGC TGC TGT TGC
130235 TGC * 10 27/30 TGC TGC GGC CGC TGC TGC TGC TGC TGC CGC
140092 CTG * 7 20/21 CTG CTG CTG CTG CTG CTG TTG
143194 GTC * 8 22/24 GTC GTC GTC GTT CTC GTC GTC GTC
165068 ACG * 7 19/21 ACG ATG ACG ACT ACG ACG ACG
166609 TGA * 7 19/21 TGA TGA TGG TAA TGA TGA TGA
179598 TCA * 10 28/30 TCA TCA TCA TCA TCA TCA TCA CCA TCG TCA
180014 AAC * 8 22/24 AAC AAC AAC AAC AAC AAC GGC AAC
180458 CAA * 7 20/21 CAA CAA CAA CAG CAA CAA CAA
184363 CTT * 7 20/21 CTT CTT CTG CTT CTT CTT CTT
188178 TGC * 8 23/24 TGC TGC TCC TGC TGC TGC TGC TGC
189499 TGC * 8 22/24 TGC TGC CGC TGC TGC GGC TGC TGC
195913 CTG * 8 22/24 CTG CTG CTG CTG CTG CTG CTT CTT
197663 GTG * 7 19/21 GTG GTA GTG GTG GTG GTA GTG
-----------------------------------------------------------------------------------------
Total sequence length......................... 260713
Total number of repeats detected.............. 22
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ACG 1 1 0 0 0 0 0 0 0 0 0 0 0
TAG 1 0 1 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 5 4 1 0 0 0 0 0 0 0 0 0 0
TCA 1 0 1 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 3 3 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 1
1 AAC + 0 ACA + 1 CAA + 1 GTT + 0 TTG + 0 TGT = 3
0 ATG + 1 TGA + 0 GAT + 1 CAT + 0 ATC + 1 TCA = 3
0 AGT + 0 GTA + 1 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 1 GCT + 3 CTG + 5 TGC = 9
1 ACG + 0 CGA + 0 GAC + 0 CGT + 1 GTC + 0 TCG = 2
0 ACC + 1 CCA + 0 CAC + 0 GGT + 1 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7303119|gb|AE003813.1|AE003813 Drosophila melanogaster genomic scaffold 142000013386047 section 23 of 52, complete sequence
Position Repeat Coverage Repeat
29724 AAT * 7 19/21 AAT AAT AAT AAT AAT AAC AAC
31711 CGA * 7 19/21 CGA CGA CGA CGA TGA GGA CGA
107486 TGT * 7 19/21 TGT TGT TGT TGT TGT TGC TGG
110602 AGG * 10 27/30 AGG AGG AGG AGG GGG AGG AGG AGG CGG TGG
163116 TGC * 9 25/27 TGC TGC TGC TGC TGC TGC TGC TGT TGA
179852 CAA * 13 36/39 CAA CAA GAG CAA CAA CAA CAA CAA CAA CAA CAA CAA TAA
190403 GCT * 8 22/24 GCT TCT ACT GCT GCT GCT GCT GCT
199510 CTG * 8 22/24 CTG CCG CTG CTG TTG CTG CTG CTG
234939 ACA * 8 23/24 ACA ACA ACA ACA GCA ACA ACA ACA
254179 TGA * 8 23/24 TGA TGA TGA TGA TGA TGA TGA TGT
-----------------------------------------------------------------------------------------
Total sequence length......................... 258778
Total number of repeats detected.............. 10
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 1 0 1 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 0 0 1 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CGA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 1 CAA + 0 GTT + 0 TTG + 1 TGT = 3
0 ATG + 1 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 1
0 AGC + 0 GCA + 0 CAG + 1 GCT + 1 CTG + 1 TGC = 3
0 ACG + 1 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7303102|gb|AE003812.1|AE003812 Drosophila melanogaster genomic scaffold 142000013386047 section 22 of 52, complete sequence
Position Repeat Coverage Repeat
9812 GTT * 8 22/24 GTT GTT GTT GTT GCT ATT GTT GTT
9886 GCT * 7 19/21 GCT GCT GCT GCT GCT GCT GGC
13350 GCT * 7 19/21 GCT GTT GTT GCT GCT GCT GCT
15077 ATC * 8 22/24 ATC ATC ATC ATC ATC ATC CAC ATC
15854 TTG * 8 22/24 TTG TTG TTG TTG TTG TTG CTG CTG
16781 ACA * 7 20/21 ACA ACA ACA ACA ACA GCA ACA
19063 GCT * 8 22/24 GCT GCT TCT GCT TCT GCT GCT GCT
19956 AGG * 8 22/24 AGG AGG AGG AGG AGT AGA AGG AGG
20863 TGG * 10 27/30 TGG TGG CGG TGT TGG TGG TGG TGG TGG TGC
32627 GAT * 7 19/21 GAT GAT GAT GAT GGT GGT GAT
44706 AAC * 8 22/24 AAC AGC AAC AAC AGC AAC AAC AAC
104335 TGC * 7 20/21 TGC TGC TGC TGC TGT TGC TGC
107906 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CAA
119041 GTT * 11 30/33 GTT GTT GTT GTC GTT GTT GTT GGT GTT GTC GTT
128916 ATA * 18 50/54 ATA ATA ACA ATA ATA ATA ACA ATA ATA ATA ATA ATA TTA ATA ATA ATT ATA ATA
129339 ATA * 18 50/54 ATA ATA ACA ATA ATA ATA ACA ATA ATA ATA ATA ATA TTA ATA ATA ATT ATA ATA
136310 AAT * 15 41/45 AAT AAT AAT ACC AAT AAT AAT AAT AAT ATT AAT AAT AAT TAT AAT
143121 GTT * 7 19/21 GTT GCT GTT GCT GTT GTT GTT
145032 CAA * 10 27/30 CAA CAA CAG CAA CAA GAA CAA CAA CAA CAC
156170 CAA * 8 22/24 CAA CAA CAC CAA CAT CAA CAA CAA
157080 TAG * 8 22/24 TAG TAG TAG TAG TAG TAG TGG CAG
167563 ATG * 7 19/21 ATG ATA ATG ATG ATG ATG ATA
173192 CTG * 7 19/21 CTG CTG CTG CTG CTG CTG CCA
180324 GGT * 7 19/21 GGT GTT GAT GGT GGT GGT GGT
184596 GTT * 7 19/21 GTT GTC GCT GTT GTT GTT GTT
198824 AGG * 7 19/21 AGG AGG AGG AGG AGG AGC AGC
198855 GCA * 7 19/21 GCA ACA GCA GCA GCA TCA GCA
206002 CAG * 10 27/30 CAG CAG CAG CAG CAG CAG CAA CAT CAG CAT
225653 ACA * 8 22/24 ACA AAA ACA ACA ACA ACA ACA AAA
225769 CAG * 7 19/21 CAG CAA CTG CAG CAG CAG CAG
239131 GAT * 7 19/21 GAT CAT GAT AAT GAT GAT GAT
-----------------------------------------------------------------------------------------
Total sequence length......................... 257946
Total number of repeats detected.............. 31
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 0 0 1 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 2 0 0 0 2 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 2 2 0 0 0 0 0 0 0 0 0 0 0
ACA 2 2 0 0 0 0 0 0 0 0 0 0 0
TAG 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 2 2 0 0 0 0 0 0 0 0 0 0 0
GTT 4 3 1 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 3 3 0 0 0 0 0 0 0 0 0 0 0
CAA 2 1 1 0 0 0 0 0 0 0 0 0 0
CAG 3 2 1 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 2 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 3
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 2 ACA + 2 CAA + 4 GTT + 1 TTG + 0 TGT = 10
1 ATG + 0 TGA + 2 GAT + 0 CAT + 1 ATC + 0 TCA = 4
0 AGT + 0 GTA + 1 TAG + 0 ACT + 0 CTA + 0 TAC = 1
2 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 2
0 AGC + 1 GCA + 3 CAG + 3 GCT + 1 CTG + 1 TGC = 9
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 1 GGT + 0 GTG + 1 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7303071|gb|AE003811.1|AE003811 Drosophila melanogaster genomic scaffold 142000013386047 section 21 of 52, complete sequence
Position Repeat Coverage Repeat
2401 TGC * 7 19/21 TGC TGC TGC TGC TAC TGC TGG
28052 TTC * 7 19/21 TTC TTC TTT TTC TTC TTC TTT
60733 TTA * 7 19/21 TTA TTA TTA TTA TTA TAA TTG
113492 CTG * 9 25/27 CTG CTG ATG CTG CTG CTG CTG CTG CTC
172311 GCT * 8 23/24 GCT GCT GCT GCT GCT TCT GCT GCT
176446 GCA * 7 19/21 GCA GCA GCA GCA GAA GGA GCA
177930 CAG * 8 22/24 CAG CAG CAG CAG GAG CAG CAG CAA
178280 AGC * 10 27/30 AGC AGC AGC AGC AGC ATC AGC ATC AGC ATC
180193 GCT * 8 22/24 GCT ACT GTT GCT GCT GCT GCT GCT
237599 TTG * 7 19/21 TTG TTA TTG CTG TTG TTG TTG
-----------------------------------------------------------------------------------------
Total sequence length......................... 259379
Total number of repeats detected.............. 10
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGC 1 0 1 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TTC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 1 TTC + 0 TCT = 1
0 AAC + 0 ACA + 0 CAA + 0 GTT + 1 TTG + 0 TGT = 1
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 1 GCA + 1 CAG + 2 GCT + 1 CTG + 1 TGC = 7
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7303048|gb|AE003810.1|AE003810 Drosophila melanogaster genomic scaffold 142000013386047 section 20 of 52, complete sequence
Position Repeat Coverage Repeat
8705 CAG * 8 22/24 CAG CAG CAG CAA CAA CAG CAG CAG
18492 GCT * 12 33/36 GCT GCT GCT GCT GCT GTT GTT GCT GCT GCT GCT ACT
18531 GCT * 9 25/27 GCT GCT GCT GCT GCT GCT GTT GCT GTT
42256 CAG * 8 23/24 CAG CAG CAG CAG CAG CAG CAG CAA
49220 CAG * 10 27/30 CAG CAG CAG CAG CAG CAG CAA CGG CAG AAG
50873 GCA * 14 38/42 GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GTG GCA GCC GCG
51532 AGC * 8 22/24 AGC ACC AGC AGC AAC AGC AGC AGC
51650 CAG * 9 25/27 CAG CAG CGG CAG CAG CAG CAT CAG CAG
72115 TTG * 7 19/21 TTG CTG TTG TTG TTG TTG CTG
72152 TTG * 7 19/21 TTG ATG TTT TTG TTG TTG TTG
73091 GAT * 15 41/45 GAT GTT GAT GTT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GCA
78934 AGC * 8 22/24 AGC AGC AGC AGC GGC AGC AGC AGA
80880 CCT * 7 20/21 CCT CCT CCT CCT CCT CCT CCA
81037 CTG * 7 19/21 CTG CTG CCG CTG CTG CTG TTG
93922 CCT * 8 23/24 CCT CCT CCT CCT TCT CCT CCT CCT
120497 TGC * 8 22/24 TGC TGC TGA TGC TGA TGC TGC TGC
125463 GCA * 7 19/21 GCA GCA GCC GCA GCA GCA GCG
181947 AAG * 8 23/24 AAG AAG AAG AAG AAG AAG GAG AAG
182061 GAG * 8 22/24 GAG GAG GAA GAA GAG GAG GAG GAG
182679 CAG * 7 19/21 CAG CAG CAG CAC CAG CAG CAA
182706 CAG * 8 22/24 CAG CAG CAG CAT CAA CAG CAG CAG
187584 CTC * 7 19/21 CTC TTC CTC CTC CTC CTC CTT
191407 GCA * 11 30/33 GCA ACA GCA GCA GCA GCA GAA GCA GCA GCA ACA
191582 AGC * 8 22/24 AGC AGC GGC AGC AGC AGC AAC AGC
196082 AGC * 7 19/21 AGC AGC AGC AAC AGC AAC AGC
198465 GCA * 7 19/21 GCA GCA GCA ACA GCC GCA GCA
201586 GAC * 8 22/24 GAC GAC GAC GAC GAC GAA GAC GGC
209772 TGT * 8 23/24 TGT TGT TGT TGT TGT TGT TGT GGT
212057 GCT * 7 19/21 GCT GCT GCT GCT GAT GTT GCT
212080 TGC * 11 31/33 TGC TGC TGC TGC TGT TGC TGC TGC TGC TCC TGC
213637 ATC * 10 27/30 ATC ATC ATC ATC ATC ATC ATC GTC GTC GTC
229756 CCT * 7 19/21 CCT CCT CCT CCT GCA CCT CCT
-----------------------------------------------------------------------------------------
Total sequence length......................... 258873
Total number of repeats detected.............. 32
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 0 1 0 0 0 0 0 0 0 0 0 0
AGC 4 4 0 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 1 1 0 0 0 0 0 0 0 0 0 0
GAT 1 0 0 1 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 4 2 1 1 0 0 0 0 0 0 0 0 0
GCT 3 2 1 0 0 0 0 0 0 0 0 0 0
CAG 6 5 1 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 3 3 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
1 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 1
0 AAC + 0 ACA + 0 CAA + 0 GTT + 2 TTG + 1 TGT = 3
0 ATG + 0 TGA + 1 GAT + 0 CAT + 1 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 3 CCT + 1 CTC + 0 TCC = 5
4 AGC + 4 GCA + 6 CAG + 3 GCT + 1 CTG + 2 TGC = 20
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7303026|gb|AE003809.1|AE003809 Drosophila melanogaster genomic scaffold 142000013386047 section 19 of 52, complete sequence
Position Repeat Coverage Repeat
5905 CAG * 7 19/21 CAG CAG CAG CAG CGG AAG CAG
18236 TGG * 9 25/27 TGG TGG TGG TGG TGG TGG TGG TGG TTC
20282 TCA * 7 19/21 TCA TCG TCG TCA TCA TCA TCA
21427 CCA * 7 19/21 CCA CCA CCA TCA CCA CCA GCA
26043 TTG * 7 19/21 TTG ATG TTG ATG TTG TTG TTG
26651 AAC * 7 20/21 AAC AAC AAC AGC AAC AAC AAC
28524 TGC * 11 30/33 TGC TGT TGC TGC TGC TGC TGC TGC TGC TGT TGT
30038 CAT * 7 19/21 CAT CAG CAT CAT CAT CAG CAT
36764 TTA * 7 19/21 TTA TTA TTA TTA TTA TTT TTT
95778 CTC * 10 27/30 CTC CTC CTA CTC CTC CTC CTC CTC CTC TCC
100811 AGC * 9 25/27 AGC AGC AGC AGC AGC ATC AGC AGC AAC
104992 GGA * 7 19/21 GGA GGA GGA GCA AGA GGA GGA
106609 GAT * 7 20/21 GAT GAT GAT GAT GAC GAT GAT
124669 CAG * 18 49/54 CAG CAG AAG CAG CAG CAG CAG AAG CAG CAG CAG CAG CAA CAG CAG GAG CAG CAA
125382 GCA * 7 19/21 GCA GCA GCA GCA GCA TCA TCA
140642 TGA * 10 27/30 TGA TGA TGA TGA TGA TGA TGA TGC TGA TTC
156673 CAG * 8 22/24 CAG CAG CCG CAG CAG CAG CAG AAG
166323 GCA * 8 23/24 GCA GCA GCA GCA GCA ACA GCA GCA
174753 TGA * 7 19/21 TGA TGA TGA CAA TGA TGA TGA
188187 TGC * 15 41/45 TGC TGC TGC TGC CGC TGC CGC TGC TGC TGC TGC TGC TGC TGT TTC
190891 GCT * 7 19/21 GCT GCT GCT GGT GGT GCT GCT
195482 CTG * 11 30/33 CTG TTG CTG CTG CTG CTG CTG CTG GTG TTG CTG
195838 TGC * 11 30/33 TGC TGA TGC AGC TGC TGC TGC TGC TGC TGC TGT
196001 GTT * 11 32/33 GTT GTT ATT GTT GTT GTT GTT GTT GTT GTT GTT
196206 CTG * 8 22/24 CTG CTG CTG CTG CTG CTG TTG TTG
196231 TGC * 7 19/21 TGC TGC TGC TGT TGC TGT TGC
196483 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC TGT TGT
196622 GCT * 8 23/24 GCT GCT GGT GCT GCT GCT GCT GCT
196759 CTG * 11 30/33 CTG CTG CCG CTG CTG CAG CTG CTG CTG CTG ATG
223602 ATT * 8 22/24 ATT ATC ATT ATT ATT ATT ATT ATC
-----------------------------------------------------------------------------------------
Total sequence length......................... 260968
Total number of repeats detected.............. 30
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 2 1 1 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 5 2 2 1 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 0 1 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 3 2 0 0 1 0 0 0 0 0 0 0 0
CTG 3 1 2 0 0 0 0 0 0 0 0 0 0
CTC 1 0 1 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 1 ATT + 1 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 0 CAA + 1 GTT + 1 TTG + 0 TGT = 3
0 ATG + 2 TGA + 1 GAT + 1 CAT + 0 ATC + 1 TCA = 5
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 2
1 AGC + 2 GCA + 3 CAG + 2 GCT + 3 CTG + 5 TGC = 16
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 1 CCA + 0 CAC + 0 GGT + 0 GTG + 1 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7302975|gb|AE003808.1|AE003808 Drosophila melanogaster genomic scaffold 142000013386047 section 18 of 52, complete sequence
Position Repeat Coverage Repeat
28073 CCT * 8 22/24 CCT CCT CAA CCT CCT CCT CCT CCT
32300 TGT * 8 22/24 TGT TGT TGT TGT TAT TGT TGT TGC
36542 AAC * 7 19/21 AAC AAG AAC AAC AAC AAA AAC
37386 TTA * 7 19/21 TTA TTG TTA TTA TTA TTA TTT
40725 AAC * 7 19/21 AAC AAC AGC AAC AAC AAC AAA
40891 CAA * 8 23/24 CAA CAA CAA CAG CAA CAA CAA CAA
42614 GAC * 8 22/24 GAC GAC GAC GAC GAC GAC GAC GTT
43814 CTC * 10 27/30 CTC CGC CTC CTT CTC CTC CTC CTC CTC CCC
63560 TGC * 8 22/24 TGC TTC TGC TTC TGC TGC TGC TGC
71063 GGT * 7 19/21 GGT GGT GGT GAT GGT GGT GGG
84328 TCC * 8 23/24 TCC TCC TCC TCT TCC TCC TCC TCC
90500 GTT * 7 19/21 GTT GTT CTT GAT GTT GTT GTT
101326 GCA * 8 22/24 GCA GCA GCA GCA GCA GCA ACA ACA
101740 CCA * 11 30/33 CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA TTC
105536 CTC * 11 30/33 CTC CTC CAG CTC CTC CTC CTC CTC CTC CTC CTT
109556 CAT * 7 19/21 CAT CAT CCT CAT CAT CTT CAT
109637 CAT * 8 22/24 CAT CAT CAT TCT CAT CAT CAT CAT
109661 CAA * 7 19/21 CAA CAA CAA CAA CAA GCA CAA
109715 CAA * 11 30/33 CAA CAG CAA CAA CAA CTA CAA CAA CAA CAA CAC
110520 CAG * 15 41/45 CAG CAG CAG CAG CAG CAG CAA CAG CAG CAG CAG CAA CCG CAA CAG
114950 CAA * 8 22/24 CAA CAA CAA CAA CAA CAG CAA CAG
132844 TAT * 7 19/21 TAT TAT TAT TAT TAT TAT ATT
137844 CTG * 10 27/30 CTG CTG CTG CTC CTG TTG CTG CTG CTG TTG
138157 CTG * 11 31/33 CTG CCT CTG CTG CTG CTG CTG CTG CTG CTG CTG
140061 GCT * 8 22/24 GCT GCA GCA GCT GCT GCT GCT GCT
142312 CTC * 8 22/24 CTC CTC CTC CTC ATC CTC ATC CTC
153127 GTG * 7 19/21 GTG GTG GTG GTT GAG GTG GTG
155904 TGC * 7 19/21 TGC TGT TGC TGC TGC TGC TGA
207552 GCT * 7 19/21 GCT ACT GCT GCT GCT GCT GAT
245412 CTG * 7 19/21 CTG CTC CTG CTG CTT CTG CTG
-----------------------------------------------------------------------------------------
Total sequence length......................... 262173
Total number of repeats detected.............. 30
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 2 2 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 4 3 1 0 0 0 0 0 0 0 0 0 0
CAT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 1 0 0 1 0 0 0 0 0 0 0 0 0
CTG 3 1 2 0 0 0 0 0 0 0 0 0 0
CTC 3 1 2 0 0 0 0 0 0 0 0 0 0
CCA 1 0 1 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 1 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
2 AAC + 0 ACA + 4 CAA + 1 GTT + 0 TTG + 1 TGT = 8
0 ATG + 0 TGA + 0 GAT + 2 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 1 CCT + 3 CTC + 1 TCC = 5
0 AGC + 1 GCA + 1 CAG + 2 GCT + 3 CTG + 2 TGC = 9
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 1 CCA + 0 CAC + 1 GGT + 1 GTG + 0 TGG = 3
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7302923|gb|AE003807.1|AE003807 Drosophila melanogaster genomic scaffold 142000013386047 section 17 of 52, complete sequence
Position Repeat Coverage Repeat
7858 ATC * 13 36/39 ATC GAC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AGC
68186 TGC * 7 20/21 TGC TGC TGC TGC TGC TGC TGT
94551 TGC * 10 27/30 TGC TCC TGT TGC TGC TGC TGC TGC TGC CGC
101339 AGC * 8 22/24 AGC AAC AGC AGC AGC AGC AGC AAC
105438 AAC * 8 22/24 AAC AAC AAC AAC AAC AAC AAC GCC
119845 GGA * 10 28/30 GGA GGT GGA GGA GGA GGA GGA GGA GGA GGT
126780 ACC * 8 22/24 ACC ATC ACC ACC ACC ATC ACC ACC
127799 CAC * 7 19/21 CAC CAC CTC CAC AAC CAC CAC
201341 CTC * 11 31/33 CTC CTC CTC CTC CTC CTC TTC ATC CTC CTC CTC
202450 AGG * 7 19/21 AGG ATG AGG ACG AGG AGG AGG
202471 ACG * 7 19/21 ACG ACG ACG ACG TCG ACG AGG
246474 AAC * 8 22/24 AAC GAC AAC AAC AAC AAC AAC ATC
251181 AGC * 7 20/21 AGC AGC AGC AGC AAC AGC AGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 260067
Total number of repeats detected.............. 13
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 2 2 0 0 0 0 0 0 0 0 0 0 0
ATC 1 0 0 1 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 2 0 0 0 0 0 0 0 0 0 0 0
ACG 1 1 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 1 1 0 0 0 0 0 0 0 0 0 0
GGA 1 0 1 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
2 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 2
0 ATG + 0 TGA + 0 GAT + 0 CAT + 1 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 1 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 3
2 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 2 TGC = 4
1 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 1
1 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7302890|gb|AE003806.1|AE003806 Drosophila melanogaster genomic scaffold 142000013386047 section 16 of 52, complete sequence
Position Repeat Coverage Repeat
8347 GAT * 10 28/30 GAT GGT GAT GAT GAT GAT GAT GAC GAT GAT
30714 GCA * 8 22/24 GCA GCA TCA GCA TCA GCA GCA GCA
51342 GCA * 8 23/24 GCA GCA GCA GCA GCA GCA GCA TCA
85490 GCA * 7 19/21 GCA GCA GCA GCA GTC GCA GCA
88626 TGT * 8 22/24 TGT AGT TGT TGT TGT TGT TGT TGC
109280 CTC * 8 22/24 CTC ACC CTC CTC CTC CTC CTC CTC
136642 CAA * 7 19/21 CAA CAA AAA CAA CAA CAG CAA
159130 CAG * 7 19/21 CAG CAG CAG AAA CAG CAG CAG
173000 AGC * 7 19/21 AGC AGC AGA AGC AGC AGC AGG
197062 TGC * 8 22/24 TGC TGC TAC TGC TGC TGC TTC TGC
206733 TTG * 8 22/24 TTG CTG TTG TTG TTG TTG TTG TTT
241565 TGC * 10 28/30 TGC TGC TGA TGC GGC TGC TGC TGC TGC TGC
247423 CTG * 14 38/42 CTG CTG CCG CTG CTG CTG CTG CTG TTG CTG CTG TTG CTG TTG
264085 CTG * 8 22/24 CTG CTT CTG CTG CTG TTG CTG CTG
-----------------------------------------------------------------------------------------
Total sequence length......................... 268219
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 1 1 0 0 0 0 0 0 0 0 0 0
GAT 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 3 3 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 2 1 0 1 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 1 CAA + 0 GTT + 1 TTG + 1 TGT = 3
0 ATG + 0 TGA + 1 GAT + 0 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 1
1 AGC + 3 GCA + 1 CAG + 0 GCT + 2 CTG + 2 TGC = 9
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7302851|gb|AE003805.1|AE003805 Drosophila melanogaster genomic scaffold 142000013386047 section 15 of 52, complete sequence
Position Repeat Coverage Repeat
8035 GGC * 7 20/21 GGC AGC GGC GGC GGC GGC GGC
11737 GGC * 7 19/21 GGC GGC GGC GGC GGC GGC AGA
19215 AAT * 7 20/21 AAT AAT AAT AAT AAT AAT AAA
31466 TCA * 9 25/27 TCA TCA TCA TCA TCT TCA TCA TCA TAA
61632 ATC * 7 19/21 ATC ATC ATC ATC ATC CTC CTC
69650 TGT * 8 22/24 TGT TGT TGT TGG TGT TGT TGT TGC
129664 GGC * 7 19/21 GGC GGC GGC GGA GGT GGC GGC
137224 CAC * 8 22/24 CAC CAG CAC CAC CAC CAC GAC CAC
168245 CAG * 7 19/21 CAG CAG CAG CAG CAG CAG GAA
175475 GAC * 8 22/24 GAC GAC TGC GAC GAC GAC GAC GAC
204422 TGT * 9 25/27 TGT TGT TGT TGT TGT TGT TGT GAT TGT
215798 GCT * 11 30/33 GCT GCT GCT GCT GCT GTT GCT GCT GAT GCA GCT
262738 CTG * 11 30/33 CTG CTG CTG CTG TTG TTG CTG CTG CTG CTG CCG
-----------------------------------------------------------------------------------------
Total sequence length......................... 270307
Total number of repeats detected.............. 13
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 2 2 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GGC 3 3 0 0 0 0 0 0 0 0 0 0 0
GCT 1 0 1 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 2 TGT = 2
0 ATG + 0 TGA + 0 GAT + 0 CAT + 1 ATC + 1 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 1 CAG + 1 GCT + 1 CTG + 0 TGC = 3
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 1
3 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 3
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7302807|gb|AE003804.1|AE003804 Drosophila melanogaster genomic scaffold 142000013386047 section 14 of 52, complete sequence
Position Repeat Coverage Repeat
4556 ATC * 9 25/27 ATC ATC ATC ATC ATC ATC GTT ATC ATC
12396 TGT * 7 19/21 TGT TGT TGT TGC TGT TGT TGC
30457 GCA * 7 19/21 GCA GCA GCA GCA GGA TCA GCA
30568 GCA * 7 19/21 GCA GCA GCA GCA ACG GCA GCA
97354 CCA * 8 22/24 CCA CCG CCA CCA CCA CCC CCA CCA
97432 CCA * 9 25/27 CCA CCC CCA CCA CCA CCA CCA CCA CCG
113627 GAT * 7 20/21 GAT GAT GAT GAT GAT GAT GCT
123580 CAT * 7 19/21 CAT CAT CAT AAT CAT CAT CAA
172203 GAT * 7 19/21 GAT GAT GAT GAA GAT GAT AAT
180075 GCA * 10 27/30 GCA GCA ACA GCA ACA GCA GCA GCA GCA GCT
180223 GCA * 7 19/21 GCA GCA TCT GCA GCA GCA GCA
188744 AGC * 8 22/24 AGC AGC AGC AGA TGC AGC AGC AGC
199528 TAT * 9 25/27 TAT TAT TAT TAA TAT TAT CAT TAT TAT
-----------------------------------------------------------------------------------------
Total sequence length......................... 259817
Total number of repeats detected.............. 13
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCA 4 3 1 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 1 TGT = 1
0 ATG + 0 TGA + 2 GAT + 1 CAT + 1 ATC + 0 TCA = 4
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 4 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 5
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 2 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7302766|gb|AE003803.1|AE003803 Drosophila melanogaster genomic scaffold 142000013386047 section 13 of 52, complete sequence
Position Repeat Coverage Repeat
10331 GCA * 7 19/21 GCA GCA GCA GCA GCA GCT CCA
10353 CAG * 7 19/21 CAG CAG CAA CAG CAT CAG CAG
13372 GGT * 7 19/21 GGT GGT GGC GGT GGT GGT GGC
16624 GGT * 7 19/21 GGT GGT GGT GGT GGT GGT GTG
31828 ACA * 7 19/21 ACA ACA TCA ACA ACA ACG ACA
33862 GAT * 7 19/21 GAT GAT GAT GAT GGT GAT GAC
75958 TGC * 8 22/24 TGC TGC TGT TGC TGA TGC TGC TGC
102726 TTA * 7 19/21 TTA TTA TTA TTA TTA TTT TGA
104436 CAG * 7 19/21 CAG CAG CAG CAG CAG CAG CCA
123306 CAT * 7 19/21 CAT CAT CAT CAT CAT CAC CAG
124327 CCA * 8 22/24 CCA CCG CCA GCA CCA CCA CCA CCA
124351 ACA * 8 22/24 ACA ACA ACA ACA ACA ATA ATA ACA
137000 AAT * 8 23/24 AAT AAT AAT AAA AAT AAT AAT AAT
141448 TGC * 7 20/21 TGC TGC TGC TGC TGC TGC TGT
148897 ATC * 8 22/24 ATC ATC ATC ATC ATC ATC AAC AGC
150499 CCA * 7 19/21 CCA CCA ACA CCA CCA CCA CCC
159945 ATA * 8 22/24 ATA ATA ATA AAT ATA ATA ATA ATA
163044 TTA * 7 19/21 TTA TTA TTA TTG TTA TTG TTA
164759 TGC * 11 30/33 TGC TGC TGT TGC TGA TGC TGC TGC TGC TGC TGT
164957 GCT * 7 19/21 GCT GCT GTT GCT GCT GCT GCC
175087 GCT * 8 22/24 GCT GCT GCT GCT GCT GCA GCA GCT
176091 TGC * 7 19/21 TGC TGC GGC TGC GGC TGC TGC
176316 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC TGC AGA
176737 TTA * 7 20/21 TTA TTA TTA ATA TTA TTA TTA
176841 TTG * 20 54/60 TTG TTG TTG ATG TTG TTG TTG TTG TTG TTG TTG TGG TGG TGG TTG TTG TTG TTG TTG GGG
179519 GCG * 7 19/21 GCG GCG GCA GCG GCG GCG GCA
179543 GCG * 7 20/21 GCG GCG GCG GCG GCA GCG GCG
179568 TTG * 7 19/21 TTG TGG TTG TTG TTG CTG TTG
179616 TGT * 9 25/27 TGT GGT TGT TGT TGT TGT TGA TGT TGT
187614 TGG * 11 30/33 TGG TCG TGG TGG TGG TGA TGG TGG TGG TGG AGG
221262 AAC * 14 38/42 AAC CAC AAA AAC AAC AAC AAC AAC AAC AAC AAC AAC AGC AGC
225775 CAT * 7 20/21 CAT CAT CAT CGT CAT CAT CAT
229955 GCA * 7 19/21 GCA GCA GCA ACA GCG GCA GCA
238245 GCA * 7 19/21 GCA GCA GCA GCA GCA AAA GCA
250387 AAT * 9 25/27 AAT AAT GAT AAT AAT AAT AAT AAT TAT
259067 GGC * 7 19/21 GGC GTC GGT GGC GGC GGC GGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 282588
Total number of repeats detected.............. 36
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 2 2 0 0 0 0 0 0 0 0 0 0 0
AAC 1 0 0 1 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 2 2 0 0 0 0 0 0 0 0 0 0 0
TTA 3 3 0 0 0 0 0 0 0 0 0 0 0
TTG 2 1 0 0 0 1 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 5 4 1 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 2 2 0 0 0 0 0 0 0 0 0 0 0
GGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 3 3 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCG 2 2 0 0 0 0 0 0 0 0 0 0 0
CAT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CCA 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
2 AAT + 1 ATA + 0 TAA + 0 ATT + 3 TTA + 0 TAT = 6
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 2 ACA + 0 CAA + 0 GTT + 2 TTG + 1 TGT = 6
0 ATG + 0 TGA + 1 GAT + 2 CAT + 1 ATC + 0 TCA = 4
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 3 GCA + 2 CAG + 2 GCT + 0 CTG + 5 TGC = 12
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 2 CCA + 0 CAC + 2 GGT + 0 GTG + 1 TGG = 5
1 GGC + 2 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 3
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7302706|gb|AE003802.1|AE003802 Drosophila melanogaster genomic scaffold 142000013386047 section 12 of 52, complete sequence
Position Repeat Coverage Repeat
5061 CAG * 7 19/21 CAG GAG CAG GAG CAG CAG CAG
122816 AGC * 10 28/30 AGC AGC AGC AGC AGC AGC AGC AGC AGC GAC
158449 GGA * 7 19/21 GGA GGA GGA GTA GGA GGA GCA
207710 TGT * 8 22/24 TGT TGT TGT AGT TGT TGT TGT CGT
208171 TTG * 7 19/21 TTG CTG GTG TTG TTG TTG TTG
211042 TTG * 7 19/21 TTG TTG TTG TTG TCG TTG TTC
252991 TTG * 7 19/21 TTG CTG TTG TTG TTC TTG TTG
-----------------------------------------------------------------------------------------
Total sequence length......................... 262401
Total number of repeats detected.............. 7
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGC 1 0 1 0 0 0 0 0 0 0 0 0 0
TTG 3 3 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 3 TTG + 1 TGT = 4
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 1
1 AGC + 0 GCA + 1 CAG + 0 GCT + 0 CTG + 0 TGC = 2
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7302679|gb|AE003801.1|AE003801 Drosophila melanogaster genomic scaffold 142000013386047 section 11 of 52, complete sequence
Position Repeat Coverage Repeat
13634 ATA * 7 20/21 ATA ATA ATA ATG ATA ATA ATA
46212 AGC * 7 19/21 AGC AGC AGC AGC AGC AGT ATC
49300 GCT * 8 22/24 GCT GAT GCG GCT GCT GCT GCT GCT
65080 GCT * 10 27/30 GCT GCT GCT GCT GCT GCT GCT GCC ACT GCC
81225 GCA * 25 69/75 GCA GCA GCA GAA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA AAA GAA GCA GCA ATA GCA
92285 TGC * 9 25/27 TGC TGA TGC TGA TGC TGC TGC TGC TGC
116214 TGA * 9 25/27 TGA TGA CGA TGA CGA TGA TGA TGA TGA
126814 TCC * 8 23/24 TCC ACC TCC TCC TCC TCC TCC TCC
129833 TTG * 7 19/21 TTG TTG TTG TTA TTG TTG TCG
129880 GTT * 8 22/24 GTT GTT GTT GTT GTT GTT GTT GCC
132613 CAA * 7 19/21 CAA CAA CAA GAA CAA GAA CAA
204726 TGA * 7 19/21 TGA TGG CGA TGA TGA TGA TGA
223689 AAT * 8 22/24 AAT AAT AAT AAT AAT AAT AAT ACA
234885 TGC * 8 22/24 TGC TGT TGT TGC TGC TGC TGC TGC
235077 CTG * 8 22/24 CTG ATG TTG CTG CTG CTG CTG CTG
245226 TGC * 8 22/24 TGC TGT TGC TGC TGC TGC TGC TGT
245253 TGC * 7 19/21 TGC TGC TGT TGT TGC TGC TGC
250633 TGT * 10 27/30 TGT TGT TGT TGT TGT TTT TGT TGT TGC TGC
250691 ACG * 7 19/21 ACG ACG ACG ACG ACG ACG GCA
251768 TGC * 7 20/21 TGC TGC TGC TGC TGC TGT TGC
251855 TGC * 25 68/75 TGC TGC TGC TGC TGG TGT TGC TGC TGC TGC TGC TGC TGT TGC TGT TGC TGC TGC TGC TGC TGT TGC TGG TGA TGC
255615 GCT * 8 22/24 GCT GCT GAT GGT GCT GCT GCT GCT
258839 AAC * 8 22/24 AAC AAC AAC AAC ACA AAC AAC AAC
259041 TTG * 7 19/21 TTG CTG TTG TTG TTG TTG GTG
262290 GGA * 7 20/21 GGA TGA GGA GGA GGA GGA GGA
264159 CTG * 9 25/27 CTG CTG TTG CTG CTG CTG CTG TTG CTG
268978 CAA * 10 27/30 CAA CAA TGA CAA CAA CAA CAA CAA CAA CAC
269867 GCT * 10 27/30 GCT GCT GCT GCT GCT GCT GCT GTT GTT GGT
269950 TGT * 9 25/27 TGT TTT AGT TGT TGT TGT TGT TGT TGT
270873 TGC * 7 19/21 TGC TGC TGC CGC CGC TGC TGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 272650
Total number of repeats detected.............. 30
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACG 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGA 2 2 0 0 0 0 0 0 0 0 0 0 0
TGT 2 1 1 0 0 0 0 0 0 0 0 0 0
TGC 7 6 0 0 0 0 0 1 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 0 0 0 0 0 0 1 0 0 0 0 0
GCT 4 2 2 0 0 0 0 0 0 0 0 0 0
CAA 2 1 1 0 0 0 0 0 0 0 0 0 0
CTG 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 2 CAA + 1 GTT + 2 TTG + 2 TGT = 8
0 ATG + 2 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 0 GAG + 0 CCT + 0 CTC + 1 TCC = 2
1 AGC + 1 GCA + 0 CAG + 4 GCT + 2 CTG + 7 TGC = 15
1 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7302632|gb|AE003800.1|AE003800 Drosophila melanogaster genomic scaffold 142000013386047 section 10 of 52, complete sequence
Position Repeat Coverage Repeat
1431 TGT * 8 22/24 TGT TGT TGT TGT TGT TGT TGT AGC
27461 GCT * 7 19/21 GCT GCC GCT GCT GCT GCT GCC
28471 GCT * 7 19/21 GCT GCT GCT CCT GCT CCT GCT
28494 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC TGG TGG
28821 TGC * 7 19/21 TGC TGT TGC TGC TGC GGC TGC
28845 TGC * 11 31/33 TGC TGT TGC TGC TGC TGC TGC TGC TGC TGC TTC
28907 TGC * 9 25/27 TGC CGC CGC TGC TGC TGC TGC TGC TGC
29161 GCT * 12 34/36 GCT ACT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCC
29733 ATG * 12 33/36 ATG ACC ATG ATG ATG ATG ATG ATG ATG ATG ATG GTG
33462 ACA * 8 22/24 ACA ATA ACA ACA ACA ACA ACA AAA
33553 AAC * 7 20/21 AAC AGC AAC AAC AAC AAC AAC
33683 CAA * 9 26/27 CAA CAA CAA CAA CAA CAA CAG CAA CAA
33851 GTT * 7 19/21 GTT GTT GTT GTT GTT ATT GTG
38043 GCA * 8 22/24 GCA ACG GCA GCA GCA GCA GCA GCA
57279 CAG * 8 23/24 CAG CAG CAG CAG CAG CAG CAG CAA
59284 GCA * 8 22/24 GCA GCC GCA GCA GCA GCC GCA GCA
59395 CAG * 8 22/24 CAG CAG CAG CAA CAA CAG CAG CAG
59491 CAG * 7 19/21 CAG CAA CAG CAG CAG CAG CAA
59518 CAG * 11 30/33 CAG CAG CAG CAG CAA CAA CAG CAG CAG CAG CAA
59557 CAG * 7 19/21 CAG CAG CAG CAG CAA CAA CAG
66109 CAG * 8 22/24 CAG CTG CAG CAG CAG CAG CAG CAA
72552 GCA * 8 23/24 GCA GCA GCA GCA GCA GCA GCA ACA
72746 GCA * 11 30/33 GCA GCA GCA AAA GCA GCA GCA GCA GCA GCA TCA
77306 GAG * 7 19/21 GAG AAG GAG GAG GAG GTG GAG
83081 TGA * 7 20/21 TGA TGA TGA TGA TGA TGA TGG
87123 GCA * 7 19/21 GCA GCA GCA GCA GCA GAG GCA
94156 CAA * 7 19/21 CAA CAG CAA CAG CAA CAA CAA
124818 AGG * 10 28/30 AGG AGG AGG AGG AGG AGG AGG AGG AAG AAG
132262 TAA * 7 19/21 TAA TAA TAA CAA TAA TAA TAT
132797 GCT * 9 25/27 GCT GCT GCT GCT GCT GAC GCT GCT GCT
135102 CGC * 10 28/30 CGC CGC CGC CGC CTC CGC CGC CGC CGC CGA
164133 AAC * 7 19/21 AAC AAC AGC AGC AAC AAC AAC
183378 GTT * 10 27/30 GTT GTT GTT GTT GTT GTT GTT GAT TTT GTC
203833 GGT * 7 19/21 GGT GGT GGT GGT GAT GGA GGT
204097 CTG * 7 19/21 CTG CTG CTG CAG CTG CTG CTA
207089 TTG * 7 19/21 TTG TTG TTG TTG TCG ATG TTG
217926 CAG * 7 20/21 CAG CAG CAG CAG CAG CAA CAG
220484 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CGG
229526 TTA * 7 19/21 TTA TTA TTA TTA TTA TTA TGC
232158 CAT * 8 22/24 CAT CAA CCT CAT CAT CAT CAT CAT
232310 TGC * 7 19/21 TGC TGC TGC TGA CGC TGC TGC
238447 CAG * 7 19/21 CAG CGC CAG CAG CAG CAG CAG
238896 GCA * 7 19/21 GCA GCA GCA ACA GCA ACA GCA
244173 TGC * 7 19/21 TGC TGC TGC TGT TGC AGC TGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 267271
Total number of repeats detected.............. 44
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 2 2 0 0 0 0 0 0 0 0 0 0 0
ATG 1 0 1 0 0 0 0 0 0 0 0 0 0
AGG 1 0 1 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 6 5 1 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 2 1 1 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 6 5 1 0 0 0 0 0 0 0 0 0 0
GCT 4 3 1 0 0 0 0 0 0 0 0 0 0
CAA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 9 8 1 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CGC 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 0 ATT + 1 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
2 AAC + 1 ACA + 2 CAA + 2 GTT + 1 TTG + 1 TGT = 9
1 ATG + 1 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 2
0 AGC + 6 GCA + 9 CAG + 4 GCT + 1 CTG + 6 TGC = 26
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 1 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 1 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7302581|gb|AE003799.1|AE003799 Drosophila melanogaster genomic scaffold 142000013386047 section 9 of 52, complete sequence
Position Repeat Coverage Repeat
10050 TGG * 7 19/21 TGG CGG TGG TGG TAG TGG TGG
42917 TCA * 9 25/27 TCA TCA TCA TCA TCA TCA TCA TAA TTA
57625 AGC * 10 27/30 AGC AGC AGG AGT AGC AGC AGC AGC AGC AGG
66082 CAC * 7 19/21 CAC CAC CAC CTC CAC CTC CAC
133199 TTC * 7 19/21 TTC TTC TTC TTC TTC TGC TCC
169334 CCA * 8 23/24 CCA GCA CCA CCA CCA CCA CCA CCA
170821 ACC * 7 19/21 ACC ACC ACC ACC ACA ACC AAC
194213 GTA * 8 23/24 GTA GTT GTA GTA GTA GTA GTA GTA
236211 CAC * 7 20/21 CAC CAC CAC CAC GAC CAC CAC
237677 AAC * 9 25/27 AAC AAC AAC AAC GAC AAC AAC AAC AGC
243969 GAT * 7 19/21 GAT GAC GAT GAT GAT GAT GAC
245129 AAT * 7 19/21 AAT AAT AAT AAT AAT AAA ATT
253950 GGA * 10 27/30 GGA TGA GGA GGA GGA GGA GGA GGA GGA GCG
-----------------------------------------------------------------------------------------
Total sequence length......................... 277015
Total number of repeats detected.............. 13
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 0 1 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTA 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 0 1 0 0 0 0 0 0 0 0 0 0
CAC 2 2 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 1 TTC + 0 TCT = 1
1 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 0 TGA + 1 GAT + 0 CAT + 0 ATC + 1 TCA = 2
0 AGT + 1 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 1 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 1
1 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 1
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
1 ACC + 1 CCA + 2 CAC + 0 GGT + 0 GTG + 1 TGG = 5
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7302535|gb|AE003798.1|AE003798 Drosophila melanogaster genomic scaffold 142000013386047 section 8 of 52, complete sequence
Position Repeat Coverage Repeat
5950 CAA * 7 19/21 CAA CAA CAG CAA CAA CAA CGA
6171 GAT * 8 22/24 GAT GAT AAT GAT GAT GAT GAT GGT
7147 CAA * 7 19/21 CAA CAA TAA CAA CAA CAA TAA
11731 TGC * 7 19/21 TGC TGC TGC TGC TTC GGC TGC
12066 TGC * 9 26/27 TGC TGC TGC CGC TGC TGC TGC TGC TGC
14395 TGC * 12 33/36 TGC TGC TGC TGC TGT TGC TGC TTC TGC TGT TGC TGC
19652 TGC * 10 28/30 TGC TGC TGC TGC TGC TGC GGC TGT TGC TGC
19684 CTG * 8 23/24 CTG CTG CTG CTG CTG CTG CTG CTC
29440 ATT * 8 22/24 ATT TTA ATT ATT ATT ATT ATT ATT
76618 ATT * 8 22/24 ATT ATT ATT ATA ATT ATT ATT ATG
76814 ATT * 8 22/24 ATT ATT ATT ATA ATT ATT ATT ATG
93843 TAA * 8 22/24 TAA TAA TAA TAG TAA TAA TAA TTA
99628 CTG * 7 19/21 CTG CTG CTG CTG CTG CAC CTG
117451 TCA * 7 19/21 TCA TCA TCA TCA TCT TCA TCG
131921 GAG * 7 20/21 GAG GAG GAG GAG GAG GAG GAA
139664 CCA * 9 25/27 CCA CCA CCA CCA GCA CCA CCA CCA CCT
144622 TGC * 9 25/27 TGC TGC TGT TGC TGC TGC TGC AGC TGC
144701 TGC * 9 25/27 TGC TGC TGC CGC TGC TGT TGC TGC TGC
144970 CCT * 7 19/21 CCT CCT CCA CGT CCT CCT CCT
145205 CAT * 8 22/24 CAT CAT CAT CAT CAT CAT CAT CGG
174655 CAT * 7 19/21 CAT CAT CAT TAT CAT CAT CAG
184215 TCC * 7 19/21 TCC TCA TCC TGC TCC TCC TCC
187595 TGC * 7 19/21 TGC TGC TGT TGC TGT TGC TGC
188812 GTT * 10 28/30 GTT GTA GTT GTT GTT GTT GTT GTT GTT GTG
219170 ACA * 12 33/36 ACA ACA ACA AAA ACA ACA ACA ACA ACA ACG ACA AGA
235102 ATA * 7 19/21 ATA ATA ATA ATT ATA ATT ATA
235867 TAT * 7 19/21 TAT TAG TAT TAG TAT TAT TAT
242294 TTG * 8 22/24 TTG TGG TTG CTG TTG TTG TTG TTG
245276 CAG * 7 19/21 CAG CAA CTG CAG CAG CAG CAG
256122 ATT * 7 19/21 ATT ATT ATT ATT ACC ATT ATT
256883 GGT * 8 24/24 GGT GGT GGT GGT GGT GGT GGT GGT
-----------------------------------------------------------------------------------------
Total sequence length......................... 261090
Total number of repeats detected.............. 31
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 4 4 0 0 0 0 0 0 0 0 0 0 0
ACA 1 0 1 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 7 5 2 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 0 1 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 2 2 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 1 TAA + 4 ATT + 0 TTA + 1 TAT = 7
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 2 CAA + 1 GTT + 1 TTG + 0 TGT = 5
0 ATG + 0 TGA + 1 GAT + 2 CAT + 0 ATC + 1 TCA = 4
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 1 CCT + 0 CTC + 1 TCC = 3
0 AGC + 0 GCA + 1 CAG + 0 GCT + 2 CTG + 7 TGC = 10
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 1 CCA + 0 CAC + 1 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7302512|gb|AE003797.1|AE003797 Drosophila melanogaster genomic scaffold 142000013386047 section 7 of 52, complete sequence
Position Repeat Coverage Repeat
18467 TGC * 8 22/24 TGC TGT TGC TGC TGC TGC TGC TGA
18614 TGC * 10 27/30 TGC TGC GCC TGC TGC TGC TGC TGC TGC TGT
59706 TGC * 11 30/33 TGC TGC TGC TGC TGC TGC TGC TGG TGC GCC TGC
86504 TGC * 8 22/24 TGC TTC TGC TGC TGT TGC TGC TGC
87519 TTG * 7 19/21 TTG CTG TTG TTG TTG TTA TTG
124725 TCG * 15 41/45 TCG TTG TCG TCG TTG TCG TCG TCG TCG TCG TCG TCG TCG TCG GTG
136107 CTG * 8 22/24 CTG CTG CTT CTG ATG CTG CTG CTG
137083 GGT * 7 20/21 GGT GGT GGT GGT GGT GGT GTT
149300 CAG * 15 41/45 CAG CAA CAG CAG CAG CAG CAG CAG AAG CAG CAG CAA CAG CAG CAA
149385 AGC * 9 25/27 AGC AGC AGC AGC AGC AGA ATC AGC AGC
172193 GCT * 7 19/21 GCT GCT GCC ACT GCT GCT GCT
179940 TCT * 7 19/21 TCT TCT TCT TCA TCT TCA TCT
180356 CTT * 7 19/21 CTT CTT CTC CTT CTT CTC CTT
206497 GGA * 8 22/24 GGA TGA GGA GGA GGA GGA GGA GGT
211252 TGC * 7 20/21 TGC TGT TGC TGC TGC TGC TGC
212017 CAG * 7 19/21 CAG CAG CAG CAG CAG TAG CCG
213029 TGC * 7 19/21 TGC TGC CGC TGT TGC TGC TGC
220185 ATC * 8 22/24 ATC ATC ATC ATC ATC ATC ATC GTG
235953 TGC * 7 19/21 TGC TGC TGC TGC TGC AGA TGC
235977 TGC * 14 39/42 TGC TGC CGC TGC TGC TGC TGC TGC TGC TGC TGC TGC AGT TGC
241854 TGG * 7 19/21 TGG TGG TGG TGG TGG CGG CGG
249700 CAA * 7 20/21 CAA CAA CAA CAA CAA CAA CAG
250002 AAC * 7 19/21 AAC AAC AGC AAC GAC AAC AAC
251350 GTT * 8 22/24 GTT GCT GAT GTT GTT GTT GTT GTT
257248 GAC * 8 22/24 GAC GAC AAC GAC AAC GAC GAC GAC
259562 GCA * 11 31/33 GCA GCA GGA GCA GCA GCA GCA GCG GCA GCA GCA
269873 GCT * 8 22/24 GCT GCT GCT GCT GCT GCA GTT GCT
274042 AGC * 12 33/36 AGC AAC AGC AGC AGC AGC AGC AGC AGG AGC AGC AAC
277614 CTG * 7 19/21 CTG CTG CTG CTG CTG CTG ATT
279024 TCA * 7 19/21 TCA TCA TCA TCA TCA GCA GCA
-----------------------------------------------------------------------------------------
Total sequence length......................... 287859
Total number of repeats detected.............. 30
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 1 1 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 8 5 2 1 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
TCT 1 1 0 0 0 0 0 0 0 0 0 0 0
TCG 1 0 0 1 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 0 1 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 1 0 1 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 1 TCT = 2
1 AAC + 0 ACA + 1 CAA + 1 GTT + 1 TTG + 0 TGT = 4
0 ATG + 0 TGA + 0 GAT + 0 CAT + 1 ATC + 1 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 1
2 AGC + 1 GCA + 2 CAG + 2 GCT + 2 CTG + 8 TGC = 17
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 1 TCG = 2
0 ACC + 0 CCA + 0 CAC + 1 GGT + 0 GTG + 1 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7302472|gb|AE003796.1|AE003796 Drosophila melanogaster genomic scaffold 142000013386047 section 6 of 52, complete sequence
Position Repeat Coverage Repeat
48094 GAA * 8 22/24 GAA AAA GAA GAA GGA GAA GAA GAA
104138 TGC * 7 19/21 TGC TGC TGC TGC TGT TGC CGC
116211 CCT * 7 19/21 CCT CCT CCT CCT CCT CCA CCA
119740 AGG * 7 19/21 AGG AGT GGG AGG AGG AGG AGG
127316 CAG * 11 30/33 CAG CAG CAG CAG CAT CAG CAG CAG CAG CAA CAA
143452 GCT * 7 19/21 GCT GCG GCT GCT GTT GCT GCT
143519 CTG * 7 19/21 CTG CTG CTG TCG CTG CTG CTG
143782 GCT * 7 19/21 GCT GTT GCT GCG GCT GCT GCT
147144 TGC * 7 19/21 TGC TGC TGC TGT TGC TGC AGC
184949 GCT * 7 19/21 GCT GCT GCT GCT GCT GCT CAT
223309 CTG * 7 19/21 CTG CTG CTG CTG CTG TTG CGG
223429 GCT * 7 19/21 GCT GCT GCT GCT GCT GCC GTT
223473 CTC * 9 25/27 CTC CAA CTC CTC CTC CTC CTC CTC CTC
224741 AAT * 7 19/21 AAT AAT AAT AAT AAC AAT AAA
230813 CAG * 8 23/24 CAG CAG CAG CAG CAG CAG CAG CAT
242019 CAT * 8 23/24 CAT CAT CAT CAT CAT CGT CAT CAT
259909 AAG * 7 20/21 AAG AAG AAG AAG ACG AAG AAG
260266 GCT * 8 24/24 GCT GCT GCT GCT GCT GCT GCT GCT
-----------------------------------------------------------------------------------------
Total sequence length......................... 268420
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 5 5 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 1 1 0 0 0 0 0 0 0 0 0 0
CTG 2 2 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
1 AAG + 0 AGA + 1 GAA + 0 CTT + 0 TTC + 0 TCT = 2
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 0 GAG + 1 CCT + 1 CTC + 0 TCC = 3
0 AGC + 0 GCA + 2 CAG + 5 GCT + 2 CTG + 2 TGC = 11
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7302434|gb|AE003795.1|AE003795 Drosophila melanogaster genomic scaffold 142000013386047 section 5 of 52, complete sequence
Position Repeat Coverage Repeat
102061 GAT * 9 25/27 GAT GAT GAT GAT GAT GAT GAC GAT GAC
138485 ACA * 7 19/21 ACA ACA ACA ACA AAA ACT ACA
139591 ACA * 9 25/27 ACA ACA ACA ACA GCT ACA ACA ACA ACA
142502 CAA * 10 27/30 CAA CAA CAT CAA CAA CAA CTA CAA CAA CAG
165707 AGT * 7 20/21 AGT AGT AGT TGT AGT AGT AGT
168830 CAA * 11 30/33 CAA CAA CAA CAA CAA CAA CAT CAA CAA CAA GCA
183965 ACA * 7 19/21 ACA ACA ACA ACA GCT ACA ACA
211941 CAA * 7 19/21 CAA CAA CAA CAA CAA CAG CAG
212081 GCA * 8 23/24 GCA GCA GCA CCA GCA GCA GCA GCA
243586 CAA * 7 20/21 CAA CAA AAA CAA CAA CAA CAA
244801 GTT * 7 19/21 GTT GTT GTT GTT GTT GCT GTA
246991 TGC * 11 30/33 TGC TGC TGC TGC TGC TGT TGC TGC TGC TGA TCC
-----------------------------------------------------------------------------------------
Total sequence length......................... 260400
Total number of repeats detected.............. 12
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGT 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 3 3 0 0 0 0 0 0 0 0 0 0 0
TGC 1 0 1 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 4 2 2 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 3 ACA + 4 CAA + 1 GTT + 0 TTG + 0 TGT = 8
0 ATG + 0 TGA + 1 GAT + 0 CAT + 0 ATC + 0 TCA = 1
1 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 1 GCA + 0 CAG + 0 GCT + 0 CTG + 1 TGC = 2
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7302424|gb|AE003794.1|AE003794 Drosophila melanogaster genomic scaffold 142000013386047 section 4 of 52, complete sequence
Position Repeat Coverage Repeat
14175 GCA * 7 19/21 GCA GCA GCA GAA TCA GCA GCA
53904 GAT * 7 19/21 GAT GAT GAT GCT GAT GAG GAT
55938 TGC * 7 19/21 TGC TGC TGC TTC TGC TGT TGC
71372 ATA * 18 50/54 ATA ATA ACA ATA ATA ATA ACA ATA ATA ATA ATA ATA TTA ATA ATA ATT ATA ATA
78352 ATA * 18 50/54 ATA ATA ACA ATA ATA ATA ACA ATA ATA ATA ATA ATA TTA ATA ATA ATT ATA ATA
163467 TGC * 14 38/42 TGC TGC TGC TGC TGC TGC TGC TGT TGT TGC TGC TGC TGA TGG
184294 CTT * 9 25/27 CTT CTT CTT CTT CTT CTT CTT CTT GGT
241503 TAT * 7 19/21 TAT TAT TAT AAT AAT TAT TAT
-----------------------------------------------------------------------------------------
Total sequence length......................... 261083
Total number of repeats detected.............. 8
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 2 0 0 0 2 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 1 0 1 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 2 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 3
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 1
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 1 GAT + 0 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 1 GCA + 0 CAG + 0 GCT + 0 CTG + 2 TGC = 3
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7302408|gb|AE003793.1|AE003793 Drosophila melanogaster genomic scaffold 142000013386047 section 3 of 52, complete sequence
Position Repeat Coverage Repeat
21739 ATG * 7 19/21 ATG ATT ATG ATG ATG GTG ATG
35068 TTA * 7 20/21 TTA CTA TTA TTA TTA TTA TTA
37920 GCA * 13 36/39 GCA GCA GAA GCA GCA GCA GCA GCA CCA CCA GCA GCA GCA
46383 AAT * 7 19/21 AAT AAT CAA AAT AAT AAT AAT
48958 GCT * 8 22/24 GCT GCT GTT GCT GTT GCT GCT GCT
49781 ATC * 13 36/39 ATC ATC ATC ACC ATC ACC ATC ATC ATC ATT ATC ATC ATC
50295 CAG * 11 30/33 CAG CAA CAG CAG CAG CAG CAG CAG CAG CAA CAA
50472 GCA * 7 19/21 GCA GCA GCG GCA GCG GCA GCA
65977 CAG * 11 30/33 CAG CAG CAA CAG CAG CAG CAG CAG CGG CAG CAA
67508 CTG * 8 22/24 CTG CTG CTT CTG CTG CTG CTG TTG
67572 TGC * 8 22/24 TGC TGC TGC TGC TGC TGG TGC TGG
72912 CTG * 7 20/21 CTG CTG CTG CTG CTG CTG CTC
89748 GCT * 8 22/24 GCT GCT GAT GTT GCT GCT GCT GCT
89774 TGC * 14 39/42 TGC TGA TGC TGC TGC TGC TGC TGC TGC TGC TGC TGG TTC TGC
91548 TGC * 7 20/21 TGC TGC TGC TGC TGC TGA TGC
99923 GAT * 8 22/24 GAT GAT GAT GAT GCT GAT GCT GAT
108031 GAT * 12 33/36 GAT GAT GAT GAT GAT GAT GAG GAT GAC GAT GAG GAT
114373 TGT * 7 19/21 TGT TGT TGT TGT TGT TGC TGC
115853 CAG * 7 19/21 CAG TGG CAG CAG CAG CAG CAG
124361 GCA * 10 27/30 GCA GCA GCA GCA GCA GCA GCA CCA GCT GAA
136403 CAG * 9 25/27 CAG AAG CAG CAG CAG CAG CAG CAG CAA
141547 CTG * 7 19/21 CTG TTG CTG CTG CTG TTG CTG
141766 CTG * 7 19/21 CTG CTG CTG CTG GTG CTG ATG
147982 CTG * 9 25/27 CTG GTG CTG CTG CCG CTG CTG CTG CTG
157089 TTG * 7 20/21 TTG TTG TTG TTG TTG TTG CTG
170302 CTG * 7 20/21 CTG CTG CTG CTG CTG CTG GTG
195000 GCA * 7 20/21 GCA GCA GCA GCA GCC GCA GCA
242933 CAT * 7 19/21 CAT CGT CAT CAT CAT CAT CAG
-----------------------------------------------------------------------------------------
Total sequence length......................... 263693
Total number of repeats detected.............. 28
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 0 0 1 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 3 2 0 1 0 0 0 0 0 0 0 0 0
GAT 2 1 1 0 0 0 0 0 0 0 0 0 0
GCA 4 2 1 1 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 4 2 2 0 0 0 0 0 0 0 0 0 0
CTG 6 6 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 1 TTG + 1 TGT = 2
1 ATG + 0 TGA + 2 GAT + 1 CAT + 1 ATC + 0 TCA = 5
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 4 GCA + 4 CAG + 2 GCT + 6 CTG + 3 TGC = 19
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7302377|gb|AE003792.1|AE003792 Drosophila melanogaster genomic scaffold 142000013386047 section 2 of 52, complete sequence
Position Repeat Coverage Repeat
20004 TGC * 7 20/21 TGC TGC TGT TGC TGC TGC TGC
20162 TGC * 8 22/24 TGC TGC TCC TGC TGC TGC TGC AGC
20265 GCT * 8 22/24 GCT GTT GCT GCT GCT GCT GCT GTT
24628 GCA * 12 33/36 GCA TCA GCA GCA GCA GCA GCA GCA GCA GCA GCA AAA
28013 CAG * 8 22/24 CAG CAG CAG AAG CAC CAG CAG CAG
34384 TGC * 8 22/24 TGC TGC TGG TGC TGC TGT TGC TGC
34669 CAG * 8 22/24 CAG TAG CAG CAG CAG CAG CAG CAA
42359 GCT * 14 38/42 GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT CTT GAT GAT
43570 GCT * 7 19/21 GCT GCT GCT GTT GCT GTT GCT
46686 TGC * 7 19/21 TGC TGC AGC TGC TGC GGC TGC
47431 GCT * 7 19/21 GCT GCT GCT GGA GCT GCT GCT
48566 TGT * 7 19/21 TGT TAT TGT TGT TGC TGT TGT
52606 AAT * 7 20/21 AAT AAT AAT TAT AAT AAT AAT
64660 GGC * 8 22/24 GGC GGC GGA GGC GGC GGA GGC GGC
70758 GTC * 7 20/21 GTC GTC GTC GTC GGC GTC GTC
97564 CTG * 7 19/21 CTG CTG TTG CTG CTG CTT CTG
111693 CCG * 7 19/21 CCG CCG CCA TCG CCG CCG CCG
122110 GAT * 8 22/24 GAT GAT GAT GAT GAT GAT GAT GCA
123132 CTG * 12 34/36 CTG CTG CTG CTG CTG CTG CTT CTG CTG CTG CTG ATG
151915 AAG * 8 22/24 AAG AGG AAG AAG AAG AAG TAG AAG
161876 TGC * 7 19/21 TGC TAC TGC TGC TGC TGC TTC
179644 CAG * 10 27/30 CAG CAG CAG CAG CAG CAG CAA CAG CAA CAT
208356 GAG * 8 22/24 GAG GAG GAG GAA GAG GAG GAG GAC
215047 ACA * 7 19/21 ACA ACA ACA ACA ACA ACC ACG
216924 TGC * 10 27/30 TGC TGC TGC TGC TGC TGC TGC TGC TTC TTT
-----------------------------------------------------------------------------------------
Total sequence length......................... 261900
Total number of repeats detected.............. 25
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 6 5 1 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTC 1 1 0 0 0 0 0 0 0 0 0 0 0
GGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 0 1 0 0 0 0 0 0 0 0 0 0
GCT 4 3 0 1 0 0 0 0 0 0 0 0 0
CAG 3 2 1 0 0 0 0 0 0 0 0 0 0
CTG 2 1 1 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
1 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 1
0 AAC + 1 ACA + 0 CAA + 0 GTT + 0 TTG + 1 TGT = 2
0 ATG + 0 TGA + 1 GAT + 0 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 1
0 AGC + 1 GCA + 3 CAG + 4 GCT + 2 CTG + 6 TGC = 16
0 ACG + 0 CGA + 0 GAC + 0 CGT + 1 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
1 GGC + 0 GCG + 0 CGG + 0 GCC + 1 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7302331|gb|AE003791.1|AE003791 Drosophila melanogaster genomic scaffold 142000013386047 section 1 of 52, complete sequence
Position Repeat Coverage Repeat
21555 CTG * 7 19/21 CTG CTG CAG CTG CTG CTG CAG
27488 TGG * 8 22/24 TGG CGG TGG TGG AGG TGG TGG TGG
35222 TAA * 7 19/21 TAA CAA TGA TAA TAA TAA TAA
41875 ATT * 7 19/21 ATT ATT ATT ATT ATT AAT AAT
52582 GAT * 10 28/30 GAT GAT GAT GAT GAT GAT GAT GAT GTT GTT
54404 GCG * 7 20/21 GCG GCG GCG GCG GCG GCG GCA
89436 CAT * 8 22/24 CAT CAT CAT CAT CAT TAG CAT CAT
90786 TGC * 11 30/33 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGT TTT
93250 ATT * 12 33/36 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATC TTT GTT
132393 CAG * 9 26/27 CAG CAG CAG CAG CAG CAG CAG CAG CAA
133805 GAT * 7 19/21 GAT GAT GAT GAT GAT GAC GAA
148422 ATC * 8 23/24 ATC CTC ATC ATC ATC ATC ATC ATC
151319 CAG * 7 19/21 CAG CAG CAG CAG CAA CAG CTG
152351 GTC * 7 19/21 GTC ATC ATC GTC GTC GTC GTC
186773 TCC * 8 22/24 TCC TCC TCC TCC TCC TCC TCC AAC
197314 CAA * 7 19/21 CAA CAA AAA CAA CAA CAG CAA
200936 TGA * 7 19/21 TGA TGA TGA TGA TGA AGC TGA
249052 TGG * 7 19/21 TGG TGT GGG TGG TGG TGG TGG
258072 CAT * 8 22/24 CAT CAT CAT CAT CAT CAT CGT CGT
-----------------------------------------------------------------------------------------
Total sequence length......................... 260580
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATT 2 1 1 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 1 0 1 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 2 1 1 0 0 0 0 0 0 0 0 0 0
GTC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 2 ATT + 0 TTA + 0 TAT = 3
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 1 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 1 TGA + 2 GAT + 2 CAT + 1 ATC + 0 TCA = 6
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 1 TCC = 1
0 AGC + 0 GCA + 2 CAG + 0 GCT + 1 CTG + 1 TGC = 4
0 ACG + 0 CGA + 0 GAC + 0 CGT + 1 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 2 TGG = 2
0 GGC + 1 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7288937|gb|AE003082.1|AE003082 Drosophila melanogaster genomic scaffold 142000013385249, complete sequence
Position Repeat Coverage Repeat
2834 AAT * 8 22/24 AAT AAT AAT AAT AAT AAT AAA AAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 20167
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 0
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7316096|gb|AE002575.1|AE002575 Drosophila melanogaster genomic scaffold 142000013386038, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7291893|gb|AE003466.1|AE003466 Drosophila melanogaster genomic scaffold 142000013386038 section 15 of 15, complete sequence
Position Repeat Coverage Repeat
96231 TGT * 7 19/21 TGT TTT TGT TGT TGC TGT TGT
123252 AGC * 7 19/21 AGC AGC AAC AAC AGC AGC AGC
123308 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CAA
134725 GAC * 7 19/21 GAC GAA GAC GAT GAC GAC GAC
138817 GAC * 7 19/21 GAC GAA GAC GAT GAC GAC GAC
142779 GAC * 7 19/21 GAC GAA GAC GAT GAC GAC GAC
-----------------------------------------------------------------------------------------
Total sequence length......................... 283099
Total number of repeats detected.............. 6
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 3 3 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 1 TGT = 1
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 0 GCA + 1 CAG + 0 GCT + 0 CTG + 0 TGC = 2
0 ACG + 0 CGA + 3 GAC + 0 CGT + 0 GTC + 0 TCG = 3
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7291836|gb|AE003465.1|AE003465 Drosophila melanogaster genomic scaffold 142000013386038 section 14 of 15, complete sequence
Position Repeat Coverage Repeat
7255 CTC * 7 20/21 CTC CTC CTC CTC TTC CTC CTC
42305 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC TGC GGA
42347 TGC * 10 27/30 TGC TGC TGC TGC CGC TGC TGC TGC TGC AGA
42410 GCT * 7 19/21 GCT GAT GCT GCT GCT GCT GCC
43847 ATA * 18 50/54 ATA ATA ACA ATA ATA ATA ACA ATA ATA ATA ATA ATA TTA ATA ATA ATT ATA ATA
53209 AAC * 8 22/24 AAC AAC AAC AGC AAC AGC AAC AAC
56105 GTT * 7 19/21 GTT GTT GTT GCT GTT GCT GTT
116396 GCA * 9 26/27 GCA GCA GCA GCG GCA GCA GCA GCA GCA
117870 TCA * 7 19/21 TCA TCA TCA TCA GCA TCA TCC
119364 GTT * 7 19/21 GTT GTT GTT GTC GTT GTG GTT
119511 CAA * 7 19/21 CAA CAA CAA CAG CAA CGA CAA
120033 ATT * 7 20/21 ATT ATT ATT ATT ATT ATT ATG
132300 AGC * 7 19/21 AGC CGC AGC AGC AGC AAC AGC
132322 GCA * 8 22/24 GCA GCA GCA GCA GCA GCG GCA ACA
132624 GCA * 8 22/24 GCA GCA GCA ACA GCA GCA GCC GCA
135370 GCT * 7 19/21 GCT GCT GCC GCC GCT GCT GCT
150925 GAG * 7 19/21 GAG CAG GAG AAG GAG GAG GAG
153994 TCC * 8 22/24 TCC TCC TCC TCC TCC TCC TCC GCA
193540 GCA * 7 19/21 GCA GCA CCA GCA GCC GCA GCA
197066 CAG * 7 19/21 CAG CAG CAC CAA CAG CAG CAG
206955 AGA * 7 19/21 AGA AGA AGA CGA AGA CGA AGA
227095 AGC * 7 19/21 AGC AGC AGC ACC AGC AGC ATC
253586 TGG * 7 19/21 TGG TGG GGT TGG TGG TGG TGG
-----------------------------------------------------------------------------------------
Total sequence length......................... 328500
Total number of repeats detected.............. 23
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 0 0 0 1 0 0 0 0 0 0 0 0
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGA 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 1 1 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCA 4 4 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 1 ATT + 0 TTA + 0 TAT = 2
0 AAG + 1 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 1
1 AAC + 0 ACA + 1 CAA + 2 GTT + 0 TTG + 0 TGT = 4
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 1 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 0 CCT + 1 CTC + 1 TCC = 3
2 AGC + 4 GCA + 1 CAG + 2 GCT + 0 CTG + 2 TGC = 11
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 1 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7291775|gb|AE003464.1|AE003464 Drosophila melanogaster genomic scaffold 142000013386038 section 13 of 15, complete sequence
Position Repeat Coverage Repeat
7493 TGG * 7 19/21 TGG TCG TCG TGG TGG TGG TGG
12436 GCT * 7 19/21 GCT GCT GTT GCT GCT GCT GTT
13453 GCA * 12 33/36 GCA GCA GCA GCA TCA GCA GCA ACA GCA ACA GCA GCA
15438 TAA * 7 19/21 TAA TAA TAA TAA TAG TAA TAG
27935 TGA * 10 27/30 TGA TGC TGA TGG TGA TGA TGA TGA TGA TGC
88087 ACA * 7 19/21 ACA ACA ACA AAA ACA ACA AGA
111588 GGA * 7 19/21 GGA GCA GGA GGA GGA GGT GGA
163192 CAA * 10 27/30 CAA CAA CAA CAA CAA CAA CAA CGA GAA CAG
167760 CTG * 7 19/21 CTG CTG CTT TTG CTG CTG CTG
167801 GCT * 11 30/33 GCT GCT GCT GTT GCT GTT GCT GCT GCT GTT GCT
172056 GCA * 7 20/21 GCA GCA GCA GCA GCA GCA GAA
179530 GAT * 7 19/21 GAT GAT GAT GAT GAT GAT GTG
183930 TAT * 7 19/21 TAT TAT TAT AAA TAT TAT TAT
189298 GAT * 8 22/24 GAT GAT GGT GAT GAT GAT GAT GAG
204447 AGC * 8 22/24 AGC AGC AGC AGC AGC AGC AAC AAC
233721 GGT * 8 22/24 GGT GGT GGT GGT GGA AGT GGT GGT
246715 GCT * 8 22/24 GCT GCT GCT GAT GCT GCT GCT GCC
304997 TTG * 8 22/24 TTG TTG CTG TTG TTG CTG TTG TTG
-----------------------------------------------------------------------------------------
Total sequence length......................... 306848
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 0 1 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 2 2 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 1 1 0 0 0 0 0 0 0 0 0 0
GCT 3 2 1 0 0 0 0 0 0 0 0 0 0
CAA 1 0 1 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 0 ATT + 0 TTA + 1 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 1 CAA + 0 GTT + 1 TTG + 0 TGT = 3
0 ATG + 1 TGA + 2 GAT + 0 CAT + 0 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 1
1 AGC + 2 GCA + 0 CAG + 3 GCT + 1 CTG + 0 TGC = 7
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 1 GGT + 0 GTG + 1 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7291737|gb|AE003463.1|AE003463 Drosophila melanogaster genomic scaffold 142000013386038 section 12 of 15, complete sequence
Position Repeat Coverage Repeat
12658 AAG * 7 19/21 AAG AAG AAG AAG AAG GAC AAG
48516 GCA * 7 19/21 GCA GCA GCA GCA GCA GCA ACC
51042 GCA * 7 19/21 GCA GCA GCG GCA GCA GCA GAA
86601 TGC * 7 19/21 TGC TGG TGC TAC TGC TGC TGC
89567 GCA * 7 19/21 GCA GCC GCA GCA GCA GCC GCA
90937 GCA * 7 19/21 GCA GCA GCA ACA GCA GCA GCT
96986 AAG * 7 19/21 AAG GAG AAG AAA AAG AAG AAG
98993 AAG * 9 25/27 AAG GAG AAG AAA AAG AAG AAG AAG AAG
128796 ACC * 7 19/21 ACC ACT ATC ACC ACC ACC ACC
166717 GCT * 7 19/21 GCT GCT GCT GCT GTT CCT GCT
169315 CAT * 8 22/24 CAT CAT CAT CAT CTT AAT CAT CAT
171143 TCC * 10 27/30 TCC TCC TCC TCC TCC TCC TCC TCC TCT TGT
194417 TGC * 7 19/21 TGC TGC TGC TGC CGC TGC GGC
194662 TGC * 8 22/24 TGC TGC GGC TGC TGT TGC TGC TGC
195928 GCA * 11 31/33 GCA GCA GCA GCA GCA GCA GCG GCA GCA GCA ACA
202721 TGC * 12 33/36 TGC TGA TGT TGC TGC TGC TGC TGC TGC TGC TGC TGA
205034 ACC * 8 23/24 ACC ACC ACC ACC ACC ACG ACC ACC
205160 CCA * 12 33/36 CCA CTC CCA CCA CCA CCA CCA CCA CCA CCA CCA CAA
206872 GCG * 7 19/21 GCG GCG GCG GCA GCG GCG GTG
207979 CAC * 7 19/21 CAC CAC CAC CAC CAC CAA CAA
208838 GCA * 8 22/24 GCA GCA ACA GCA GCA ACA GCA GCA
208866 CAG * 8 22/24 CAG CAG CAG CAG CAG TAG CAA CAG
208936 TCA * 7 19/21 TCA TCA TCG TCC TCA TCA TCA
210341 GCC * 7 19/21 GCC GCA GCC GCC GCC GCC GCT
215919 ATC * 8 22/24 ATC ATC ATC ATC ATC ATC ATC AAG
220285 GCT * 7 19/21 GCT GCT GCA GTT GCT GCT GCT
221495 GCT * 9 25/27 GCT GCT GCT GCT GTT GCT GCT GCT GCC
221872 GCT * 8 22/24 GCT GCT GTT GTT GCT GCT GCT GCT
222224 GCA * 8 22/24 GCA GCA GCA GAA GCA GCA GCA GAA
244659 TGC * 7 19/21 TGC TGC TGC TGC TGC TGT TGG
245414 TGT * 8 22/24 TGT TGT TGT TGT TGT TGT TCC TGT
252828 GCA * 9 25/27 GCA GCA GCA GCA GCA GCA GCA GCA GTT
254697 TGC * 8 22/24 TGC TGC TGC TGT TGC TGG TGC TGC
255546 TGC * 18 49/54 TGC TGC TGC TGC TGT TGT TGC TGC TGC TGT TGC TGC TGC TGT TGC TGC TGC TGT
262963 AGC * 7 19/21 AGC AGC AGC ATC AGG AGC AGC
266308 CAG * 12 33/36 CAG CAG CAG CAG CAG CAA CAA CAG CAG CAG CAG CAA
266347 CAG * 10 27/30 CAG CAG CAG CAA CAA CAG CAG CAG CAG CAT
273825 TGC * 10 28/30 TGC TGT TGC TGC GGC TGC TGC TGC TGC TGC
274390 GCT * 11 30/33 GCT GCT CCT GCT CCT GCT GCT GCT GCT GCT CCT
276537 AGC * 7 19/21 AGC AGC AAC AAC AGC AGC AGC
276593 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CAA
285174 TGC * 10 28/30 TGC TGC TGC TGC TGC TGC TGC TGC AGT TGC
286933 GTT * 7 19/21 GTT GTT GTT GTT GTT GCT GCT
295776 CAG * 7 19/21 CAG CAG CAG CAG CCG CAG CAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 299975
Total number of repeats detected.............. 44
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAG 3 3 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 2 0 0 0 0 0 0 0 0 0 0 0
ACC 2 2 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 9 5 3 0 1 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
TCC 1 0 1 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 8 7 1 0 0 0 0 0 0 0 0 0 0
GCT 5 4 1 0 0 0 0 0 0 0 0 0 0
GCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 5 3 2 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
3 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 3
0 AAC + 0 ACA + 0 CAA + 1 GTT + 0 TTG + 1 TGT = 2
0 ATG + 0 TGA + 0 GAT + 1 CAT + 1 ATC + 1 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 1 TCC = 1
2 AGC + 8 GCA + 5 CAG + 5 GCT + 0 CTG + 9 TGC = 29
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
2 ACC + 1 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 4
0 GGC + 1 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7291637|gb|AE003462.1|AE003462 Drosophila melanogaster genomic scaffold 142000013386038 section 11 of 15, complete sequence
Position Repeat Coverage Repeat
3456 GTT * 11 30/33 GTT GCT GTT GTT GTT GTT GTT GTT GTT GTA TTT
11433 GCT * 8 22/24 GCT GCT GGT GCT GCT GGT GCT GCT
15245 GCA * 10 27/30 GCA GCA ACA GCA GCA GCA GCA GCA ACA GCC
29780 CTT * 7 19/21 CTT CTT CTC CTT CTT TTT CTT
42888 CTG * 8 22/24 CTG CTG CTG CTG CTG CTG CTT CCG
52599 CGG * 7 19/21 CGG CGG CGT CGG CGG CGG AGG
59443 AGC * 7 19/21 AGC GAC AGC AGC AGC AGC AGC
71329 CCT * 7 20/21 CCT CCT CCT CCT CCT CCT CCG
79084 GCT * 10 27/30 GCT GCT GTT GCT GCT GCT GCT GCT GCT GAC
86675 CTG * 13 36/39 CTG GTG CTG CTG CTA CTG CTG CTG CTG CTG CTG CTG CTA
96380 AAC * 7 19/21 AAC AGC AAC AAC AAC AAC AGC
98287 CAC * 10 27/30 CAC CAC CAC CAT CAC CAC CAC AAC CAC AAC
202292 AAC * 11 30/33 AAC AAC ACC AAC AAC AAC AAG AAC AAC AAC AAA
231616 GGC * 7 20/21 GGC GGC GGC GGA GGC GGC GGC
241492 GAG * 7 19/21 GAG GGC GAG GAG GAG GAG GAG
241817 GGA * 11 30/33 GGA AGA GGA GGT GGA GGA GGA GGA GGA TGA GGA
252371 GCC * 7 19/21 GCC GCC GCC GCC GCT GCC GCT
290893 AAT * 7 20/21 AAT AAT AGT AAT AAT AAT AAT
-----------------------------------------------------------------------------------------
Total sequence length......................... 300542
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 2 1 1 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 0 1 0 0 0 0 0 0 0 0 0 0
GGA 1 0 1 0 0 0 0 0 0 0 0 0 0
GGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 0 1 0 0 0 0 0 0 0 0 0 0
GCT 2 1 1 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAC 1 0 1 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 2 1 0 1 0 0 0 0 0 0 0 0 0
CGG 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 1
2 AAC + 0 ACA + 0 CAA + 1 GTT + 0 TTG + 0 TGT = 3
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 1 GAG + 1 CCT + 0 CTC + 0 TCC = 3
1 AGC + 1 GCA + 0 CAG + 2 GCT + 2 CTG + 0 TGC = 6
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 1
1 GGC + 0 GCG + 1 CGG + 1 GCC + 0 CCG + 0 CGC = 3
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7291588|gb|AE003461.1|AE003461 Drosophila melanogaster genomic scaffold 142000013386038 section 10 of 15, complete sequence
Position Repeat Coverage Repeat
42859 GCT * 8 22/24 GCT GGT GCT GCT GCT GCT CCT GCT
44562 GTT * 8 22/24 GTT GTT GCT GCT GTT GTT GTT GTT
99049 CCT * 9 25/27 CCT CCT CCT CCT CCT CCT GCT GCT CCT
119227 ACA * 11 30/33 ACA ATA ACA ACA ACA ACA ATA ACA ACA ACA ACG
119674 AGC * 9 26/27 AGC AGC AGC AGC AAC AGC AGC AGC AGC
119983 ATG * 10 27/30 ATG ATG ATG ATG ACG ATG ATG ATG ATG AAT
137269 TAT * 11 30/33 TAT TAT TAT TAT TAA TAT TAT TAT TAT TAT ATT
142516 CCA * 10 27/30 CCA TCA CCA CCA CCA CCA CCA CCA CCC ACA
150823 CGT * 7 21/21 CGT CGT CGT CGT CGT CGT CGT
172883 GCC * 7 19/21 GCC GCC GCT GCC GCC GCC GCA
173072 CAG * 21 57/63 CAG CAG CAG CAG CAG CAG CAG CAT CAC CAC CAG CAG CAG CAG CAG CAG CAG TCG CAG CAG CAA
174733 GAG * 11 31/33 GAG GAG GAG AAG GAT GAG GAG GAG GAG GAG GAG
191605 ATG * 8 22/24 ATG ATG ATG ATG ATG ATG AAG ACG
197308 AGC * 7 19/21 AGC AAC GGC AGC AGC AGC AGC
218661 TCC * 8 22/24 TCC TCC TCC TCC TCC TCC CCC TCT
220938 TGG * 11 31/33 TGG TGG TGA TGG TGG TGG TGG TGG TGT TGG TGG
234124 TTG * 8 22/24 TTG TTG TTA TTG TTG TTA TTG TTG
245105 AAT * 8 24/24 AAT AAT AAT AAT AAT AAT AAT AAT
252783 GCA * 7 19/21 GCA GCA GCT GCC GCA GCA GCA
258692 TGC * 8 23/24 TGC TGC GGC TGC TGC TGC TGC TGC
258942 TGT * 10 27/30 TGT TGT TGT TGT TGT TGT TAT TGT TGC TGC
277060 CTG * 12 33/36 CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG GGT CTG
277202 TGC * 7 20/21 TGC TGC TGC TGC TGT TGC TGC
277273 GGT * 10 27/30 GGT GGT GGT GGT GGT GGT GGT GCT GCT GCT
277579 CTG * 7 20/21 CTG TTG CTG CTG CTG CTG CTG
277647 TGC * 8 22/24 TGC TGG TGC TGC TGC TGC TGC TGG
277912 GCT * 9 25/27 GCT GCT GCT ACC GCT GCT GCT GCT GCT
294329 GCA * 10 27/30 GCA GCA GCA GCA GCA GCA GCA GCA GCA AGT
-----------------------------------------------------------------------------------------
Total sequence length......................... 298616
Total number of repeats detected.............. 28
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 2 1 1 0 0 0 0 0 0 0 0 0 0
AGC 2 2 0 0 0 0 0 0 0 0 0 0 0
ACA 1 0 1 0 0 0 0 0 0 0 0 0 0
TAT 1 0 1 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 0 1 0 0 0 0 0 0 0 0 0 0
TGG 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 3 3 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 0 1 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 2 1 1 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 0 0 0 0 1 0 0 0 0 0 0 0
CTG 2 1 1 0 0 0 0 0 0 0 0 0 0
CGT 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 0 1 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 0 CAA + 1 GTT + 1 TTG + 1 TGT = 4
2 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 1 CCT + 0 CTC + 1 TCC = 3
2 AGC + 2 GCA + 1 CAG + 2 GCT + 2 CTG + 3 TGC = 12
0 ACG + 0 CGA + 0 GAC + 1 CGT + 0 GTC + 0 TCG = 1
0 ACC + 1 CCA + 0 CAC + 1 GGT + 0 GTG + 1 TGG = 3
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7291543|gb|AE003460.1|AE003460 Drosophila melanogaster genomic scaffold 142000013386038 section 9 of 15, complete sequence
Position Repeat Coverage Repeat
6323 CTC * 8 22/24 CTC CTT CTC CTC CTC CTC CTC CTG
55915 GAA * 7 20/21 GAA GAA GAA GAA GAA GAC GAA
57377 GCA * 7 20/21 GCA GCA GCA GCA GCA GCT GCA
65334 ATT * 7 19/21 ATT ATT ATT ATT ATT ATT GGT
83041 CCA * 7 19/21 CCA CCA CCA CCT CCA CCG CCA
94886 TGA * 8 23/24 TGA TGA TGA TGA TGA TGA TGA TGG
95977 GGA * 8 22/24 GGA GAA GGA GGA GGC GGA GGA GGA
102711 TGC * 14 38/42 TGC TGC TGC TGC TGT TGC TGC TGC TGC TGG TGC TGC TGG TGG
104773 GCC * 11 32/33 GCC GCC GCC GCC GCC GCC GCC GCC GCC GAC GCC
111197 TCC * 8 22/24 TCC TCC CAC TCC TCC TCC TCC TCC
123989 GAT * 7 20/21 GAT GAT GAT GAT AAT GAT GAT
125319 GCA * 7 19/21 GCA GCA GCA GCA GCA GCG GCG
125794 TGC * 9 25/27 TGC TGC TGC TGC TTC TGC TGC TGC TGT
126136 CCT * 8 22/24 CCT CCT CCT CCC CCT GCT CCT CCT
151100 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CAT
156029 CAG * 7 19/21 CAG CAG CGG CAG CAG GAG CAG
170174 CCA * 7 20/21 CCA CCA CCA TCA CCA CCA CCA
178339 CGG * 8 22/24 CGG CAA CGG CGG CGG CGG CGG CGG
228492 GAG * 7 19/21 GAG GCG GAG GAG GAG GCG GAG
232620 TGC * 14 38/42 TGC TGC TCC TCC TGC TGC TGC TGC TGC TGC TGC TGC TGC ATC
241187 GGA * 7 19/21 GGA GGA GGA GGC GGA GGC GGA
241211 GGA * 7 19/21 GGA GGC GGA GGC GGA GGA GGA
269018 GAG * 10 27/30 GAG GAG GAG GAG GAG GAG CAG GAG GAT GTG
276375 AGG * 8 23/24 AGG AGG ACG AGG AGG AGG AGG AGG
-----------------------------------------------------------------------------------------
Total sequence length......................... 297907
Total number of repeats detected.............. 24
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 3 1 0 2 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 2 1 1 0 0 0 0 0 0 0 0 0 0
GGA 3 3 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
GCC 1 0 1 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CGG 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 2 2 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 1 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 1 GAA + 0 CTT + 0 TTC + 0 TCT = 1
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 1 TGA + 1 GAT + 0 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 3 GGA + 2 GAG + 1 CCT + 1 CTC + 1 TCC = 9
0 AGC + 2 GCA + 2 CAG + 0 GCT + 0 CTG + 3 TGC = 7
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 2 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 1 CGG + 1 GCC + 0 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7291495|gb|AE003459.1|AE003459 Drosophila melanogaster genomic scaffold 142000013386038 section 8 of 15, complete sequence
Position Repeat Coverage Repeat
13053 CAG * 7 19/21 CAG CAT CAG CAG CAG CCG CAG
13086 CAA * 7 19/21 CAA CAA CAG CAG CAA CAA CAA
13107 CAG * 12 33/36 CAG CAA CAG CAG CAG CAG CAG CAG CAA CAG CAG CAA
55546 CCG * 7 19/21 CCG CCG CCG CCG CCA CCA CCG
86027 AGG * 12 33/36 AGG AGG AGG AGG AGG AGG AGG AAG AGG AGG AGC AGA
94492 GCT * 10 27/30 GCT GCT GCT GCT GCT GCT GCT GCT GGT AGT
122492 AGT * 8 22/24 AGT AGC AGT AGT AGT AGT AGT AGG
132998 CTG * 7 19/21 CTG CAG CTG CTG CTG CTG CAG
139681 AAC * 7 20/21 AAC AAC AGC AAC AAC AAC AAC
147614 TCG * 7 19/21 TCG TCG TCG TCT TCG TCT TCG
147727 CCT * 11 30/33 CCT CCT CCT CCT CCT CCT GCT CCT GCT CCT CGT
149813 GGA * 8 22/24 GGA GGA GGA TGA GGA GGA CGA GGA
150477 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAG CCA
161527 TGC * 11 30/33 TGC TGC TGC TGC TGC TGC TGC CGC TGC TGT TGT
165600 CAG * 7 19/21 CAG CTG CAG CAC CAG CAG CAG
165645 CAG * 7 19/21 CAG CAG CAC CAC CAG CAG CAG
166188 CAG * 7 19/21 CAG CAG CAG CAG TCG CAG CAG
193352 CCG * 7 19/21 CCG CCT CCT CCG CCG CCG CCG
193390 TCC * 7 19/21 TCC ACC TCC TCC TCC TCC GCC
255751 ATG * 7 19/21 ATG GCG ATG ATG ATG ATG ATG
287286 CTG * 9 25/27 CTG CTG CTG CTG CTG CTG CTG CTG AGG
287318 GCT * 7 19/21 GCT GCT TCC GCT GCT GCT GCT
-----------------------------------------------------------------------------------------
Total sequence length......................... 299572
Total number of repeats detected.............. 22
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 1 0 1 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 2 1 1 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 6 5 1 0 0 0 0 0 0 0 0 0 0
CTG 2 2 0 0 0 0 0 0 0 0 0 0 0
CCT 1 0 1 0 0 0 0 0 0 0 0 0 0
CCG 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 1 CAA + 0 GTT + 0 TTG + 0 TGT = 2
1 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 1
1 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 1
1 AGG + 1 GGA + 0 GAG + 1 CCT + 0 CTC + 1 TCC = 4
0 AGC + 0 GCA + 6 CAG + 2 GCT + 2 CTG + 1 TGC = 11
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 1 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 2 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7291432|gb|AE003458.1|AE003458 Drosophila melanogaster genomic scaffold 142000013386038 section 7 of 15, complete sequence
Position Repeat Coverage Repeat
58924 GCT * 7 20/21 GCT GCT GCT ACT GCT GCT GCT
67323 AGC * 7 19/21 AGC AGC AGC AGC AGC AGA AGG
71154 AAT * 7 20/21 AAT AAT AAT AAT AAT AAT AAA
101718 AGC * 7 20/21 AGC AGC AGC AGC AGC AGC AAC
149582 CTG * 7 19/21 CTG CTG CTG CTG CTG CTT GTG
161884 TTA * 10 27/30 TTA TTA TTA TTA TTA TTA TTA TTT TTA TAT
171979 GCA * 8 22/24 GCA CCA GCA GCA GCA GGA GCA GCA
174181 CAT * 7 20/21 CAT CAT CAT CAT CAT CGT CAT
179103 CAC * 7 19/21 CAC CAC CGC CAC CAC TAC CAC
179681 TCA * 7 19/21 TCA TCA TCG TCA TCA TCA TCG
216306 TGT * 7 19/21 TGT TGT TGT TGC TTT TGT TGT
216533 TTG * 7 19/21 TTG TTG TTG TTG TTG TTT TTC
228096 CTC * 7 19/21 CTC CTC ATC CTC CAC CTC CTC
231553 GGA * 7 19/21 GGA GGA GGA GGA GCA GGA GGC
283048 TGG * 8 22/24 TGG TGG TGG CGG TGG TGG TGG TAG
284261 CAC * 14 38/42 CAC CAC CAC TAC CAC TAC CAC CAC CAC CAC CAC CAC CAT CAT
299674 TCA * 7 19/21 TCA TCA TCA TCA CCA CCA TCA
-----------------------------------------------------------------------------------------
Total sequence length......................... 300917
Total number of repeats detected.............. 17
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TTA 1 0 1 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 2 2 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAC 2 1 0 1 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 1 TTG + 1 TGT = 2
0 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 2 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 2
2 AGC + 1 GCA + 0 CAG + 1 GCT + 1 CTG + 0 TGC = 5
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 2 CAC + 0 GGT + 0 GTG + 1 TGG = 3
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7291400|gb|AE003457.1|AE003457 Drosophila melanogaster genomic scaffold 142000013386038 section 6 of 15, complete sequence
Position Repeat Coverage Repeat
28474 ACA * 7 19/21 ACA ACA ACA GCA ACA ACA AGA
37841 GAT * 7 19/21 GAT GAT GAT GAC GAT GAT GAG
54817 TGC * 8 22/24 TGC TGC TGC TGC TGT TGC TGC TGA
123048 GTT * 11 31/33 GTT GTG GTT GTT GTT GTT GTT GTA GTT GTT GTT
209430 TGC * 7 19/21 TGC TGG TGC TGA TGC TGC TGC
210531 CTG * 11 30/33 CTG CTG CTT CTG CTG CTG CTG CTG CTT CTG CCG
211081 TCA * 14 38/42 TCA TCA TCG TCA CCA TCA TCA TCA TCA TCA GCA TCA TCA CCA
211317 GCT * 8 22/24 GCT GCT GCT GCT GCT GCT GCA GCA
212866 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC TAC TGT
213411 TCC * 7 19/21 TCC ACC CCC TCC TCC TCC TCC
214529 GCA * 7 19/21 GCA GCT GGA GCA GCA GCA GCA
223596 GCT * 7 19/21 GCT GCT GCT TCT GCT GCT GCA
224798 ACA * 7 19/21 ACA ACA ACA ACA GCT ACA ACA
228847 AGC * 8 22/24 AGC AGC AGC AGC AGC AGG AGC AGT
230525 CAG * 7 19/21 CAG CAG CAG CAG CAA CGG CAG
232519 CTG * 9 25/27 CTG CTG CTA CTG CTG CTG CTG CTG TTG
233930 CAT * 7 19/21 CAT CAT TAT CAT CAT CAT CAG
240767 ACC * 10 27/30 ACC ACC GCC ACC ACC ACC ACC ACC ACT AAC
246879 GTT * 8 22/24 GTT GTT GTT GTT ATT ATT GTT GTT
246913 TTG * 7 19/21 TTG TTA TTA TTG TTG TTG TTG
256249 TTG * 7 19/21 TTG CTG CTG TTG TTG TTG TTG
264261 CGA * 8 22/24 CGA CGA CGA CGA CGA CGA CGA CCC
264382 CAT * 8 22/24 CAT CAT CAG CAT CAT CAT CCT CAT
267038 GAG * 9 25/27 GAG GAG AAG GAG AAG GAG GAG GAG GAG
276204 CTG * 9 25/27 CTG CTG CTG TTG CTG CTG CTG CTG TTG
-----------------------------------------------------------------------------------------
Total sequence length......................... 290792
Total number of repeats detected.............. 25
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 2 2 0 0 0 0 0 0 0 0 0 0 0
ACC 1 0 1 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 3 3 0 0 0 0 0 0 0 0 0 0 0
TCA 1 0 0 1 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 2 1 1 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 3 2 1 0 0 0 0 0 0 0 0 0 0
CGA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 2 ACA + 0 CAA + 2 GTT + 2 TTG + 0 TGT = 6
0 ATG + 0 TGA + 1 GAT + 2 CAT + 0 ATC + 1 TCA = 4
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 1 TCC = 2
1 AGC + 1 GCA + 1 CAG + 2 GCT + 3 CTG + 3 TGC = 11
0 ACG + 1 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 1
1 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7291355|gb|AE003456.1|AE003456 Drosophila melanogaster genomic scaffold 142000013386038 section 5 of 15, complete sequence
Position Repeat Coverage Repeat
13493 CCG * 7 19/21 CCG CCG CCT CCT CCG CCG CCG
29651 AAC * 9 25/27 AAC AAC AAC AAC AAC AAC AAC AGC AGC
53439 TGA * 7 20/21 TGA TGA TGA TGA TGA TGC TGA
58153 AGC * 7 19/21 AGC GGC AGC AAC AGC AGC AGC
100938 TGC * 7 19/21 TGC TGC TGC TGC CAC TGC TGC
101123 GTT * 7 19/21 GTT GTT GTT GTG GTT GTA GTT
153475 ATG * 8 22/24 ATG ATG AAG ATA ATG ATG ATG ATG
165595 GCA * 8 22/24 GCA GCA GCA GCA GCA GTA GCA ACA
165622 GCA * 11 30/33 GCA GCA GCA GCA GCA GCA GTA GCA GCA ACA TCA
168010 CAG * 10 27/30 CAG CAA CAG CCG CAG CAG CAG CAG CAG CAT
168181 GCA * 8 22/24 GCA GCA GAA GCA ACA GCA GCA GCA
171235 GCA * 10 27/30 GCA GCA ACA GCA ACA GCA GCA GCA GCA ACA
171298 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CAA
171526 GCA * 7 19/21 GCA GCA GCA ACA ACA GCA GCA
171550 GCA * 7 19/21 GCA ACA CCA GCA GCA GCA GCA
171805 GCA * 7 20/21 GCA ACA GCA GCA GCA GCA GCA
173135 GCA * 7 19/21 GCA ACA GCA ACA GCA GCA GCA
176102 TCA * 8 22/24 TCA TCA TCA TCA GCA CCA TCA TCA
177775 CAG * 8 23/24 CAG CAG CAG CAG CAG CAG CAG CAA
201450 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC TTC TGT
252536 CAA * 7 19/21 CAA CAG CAA CAA CAA CAG CAA
256064 GTT * 7 19/21 GTT TTT GTT ATT GTT GTT GTT
260920 AGC * 10 27/30 AGC AGG AGC AGC AGC AGC AGC AGG AGC AGT
271269 GCA * 25 68/75 GCA GCA GCA GCA TCA CCA GCA GCA GCA GCA ACA GCA GCA GCA GCA ACA GCA ACA GCA CCA GCA GCA GCA GCA ACA
274813 CAA * 7 20/21 CAA CAA CAA CAA CAA CAA CTA
277346 TTG * 7 19/21 TTG TTG TTG TTG CTG TTG TTT
291840 GGC * 8 22/24 GGC GGC GGC GGC CGC TGC GGC GGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 298464
Total number of repeats detected.............. 27
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 1 1 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 2 2 0 0 0 0 0 0 0 0 0 0 0
GGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 9 6 2 0 0 0 0 1 0 0 0 0 0
CAA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 3 2 1 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 2 CAA + 2 GTT + 1 TTG + 0 TGT = 6
1 ATG + 1 TGA + 0 GAT + 0 CAT + 0 ATC + 1 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
2 AGC + 9 GCA + 3 CAG + 0 GCT + 0 CTG + 2 TGC = 16
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
1 GGC + 0 GCG + 0 CGG + 0 GCC + 1 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7291326|gb|AE003455.1|AE003455 Drosophila melanogaster genomic scaffold 142000013386038 section 4 of 15, complete sequence
Position Repeat Coverage Repeat
5261 CTC * 7 19/21 CTC CTC CTC CTC CTC CTC TTT
8176 CTC * 7 20/21 CTC GTC CTC CTC CTC CTC CTC
15489 TTA * 7 19/21 TTA TTA TTA TTA TTA TTT TAA
34268 GAT * 8 23/24 GAT GAT GAT GAT GAT GAT GAT GAA
47170 ATG * 10 27/30 ATG TTG ATG ACG ATG ATG ATG ATG ATG ATT
49454 AGC * 7 19/21 AGC AGC AAC AAC AGC AGC AGC
49510 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CAA
103676 GAG * 7 19/21 GAG GAG GAG CAG GAG GAG GAT
120568 AGC * 7 19/21 AGC AGC AAC AAC AGC AGC AGC
120624 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CAA
153739 ATA * 9 26/27 ATA ATA ATA ATA ATA ATA ATA ATA ACA
163678 CCT * 11 30/33 CCT CCT CCT CCT CCT CCT CCT CCT CCT ACA GCT
166492 AAC * 10 28/30 AAC AAC AAC AAC AAC AAC AAC AAC AGC AGC
189761 CAT * 7 19/21 CAT TGT CAT CAT CAT CAT CAT
242656 AGC * 7 19/21 AGC AGG TGC AGC AGC AGC AGC
255246 ACC * 10 27/30 ACC ACC TCC ACC TCC ACC ACC ACC ACC ACA
256879 ACA * 7 19/21 ACA GCA ACA ACA ACA ACA AAA
269441 GCC * 7 19/21 GCC GCC GCC GCC GCC GCC GTT
-----------------------------------------------------------------------------------------
Total sequence length......................... 302502
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 0 1 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 0 1 0 0 0 0 0 0 0 0 0 0
AGC 3 3 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
ACC 1 0 1 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CTC 2 2 0 0 0 0 0 0 0 0 0 0 0
CCT 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 1 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 2
1 ATG + 0 TGA + 1 GAT + 1 CAT + 0 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 1 CCT + 2 CTC + 0 TCC = 4
3 AGC + 0 GCA + 2 CAG + 0 GCT + 0 CTG + 0 TGC = 5
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
1 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7291292|gb|AE003454.1|AE003454 Drosophila melanogaster genomic scaffold 142000013386038 section 3 of 15, complete sequence
Position Repeat Coverage Repeat
14879 CAC * 7 19/21 CAC CGC AAC CAC CAC CAC CAC
14900 CAT * 11 30/33 CAT CAT CAT CAT CAT CAT CCT CAT CTT CAT CGT
32913 GAA * 8 22/24 GAA GCT GAA GAA GAA GAA GAA GAA
51208 CAA * 7 19/21 CAA TAA CAA CAA CAA CAG CAA
59678 TGC * 9 25/27 TGC TGC TGC TCC TGC TGC TGC TGT TGC
61196 GTT * 8 22/24 GTT GTT GTT GCT GTT GTT GTT GTG
68778 ATG * 10 27/30 ATG ATG ATG ATG ATG ACG ATG ATG CTG ATT
71236 GAT * 8 22/24 GAT GAT TAT GAT GAT GAT GAT TAT
76607 CAG * 7 19/21 CAG AAA CAG CAG CAG CAG CAG
90362 CAA * 8 22/24 CAA CAA CAA GAA CAA CAA GAA CAA
93071 GCA * 7 19/21 GCA GCG GCA GCA GCA GCT GCA
113684 TTG * 7 19/21 TTG TCG TTG TTG TTC TTG TTG
114646 TGT * 10 28/30 TGT TGT TGT TCT TGT TGT TGT TGT TGT TGA
119215 CAT * 8 23/24 CAT CAT CAT CAT CAT CAT CAG CAT
126003 CAA * 8 22/24 CAA CTA GAA CAA CAA CAA CAA CAA
142182 TCC * 11 30/33 TCC TCC TCC TTC TCC TCC TCC TCC TCC TTC TTC
156422 CAA * 8 22/24 CAA CAA CAA CAA CAA CAA CAG CAG
158104 AAC * 8 23/24 AAC AAC AAC AAC AAC AAC AGC AAC
164755 CTC * 8 22/24 CTC CTC CTC CTG CTC CAC CTC CTC
169527 CAA * 7 19/21 CAA CAA CAA CAA CAA CAT AAA
174226 CAT * 11 31/33 CAT CAT CAT CAT CAC CAT CAT CAG CAT CAT CAT
177402 AGC * 10 27/30 AGC AGC AGC AGC AGC AGC AGC AAC AAC AAC
177979 GCA * 11 30/33 GCA GCA GCA GCA GCA GCA GCC GCA GTA GTA GCA
179132 ACG * 8 22/24 ACG ATG ACG ACG ACG ACG ACG ACT
182381 AGC * 10 28/30 AGC AGC AGC AGC AGC AGC AGA AGC AGC GGC
184689 CAT * 7 19/21 CAT CAG CAT CAG CAT CAT CAT
186897 CAG * 12 33/36 CAG CCG CAG CAG CAG CAG CAG CAG CAG CAG CAA CAT
191079 GCA * 7 19/21 GCA GAA GCA GCA GCA GCA GCG
204192 GAT * 7 19/21 GAT GGC GAT GAT GAT GAT GAT
261184 GCA * 7 19/21 GCA ACA GCA GCA GCA GCA GCT
261209 CAG * 15 41/45 CAG CAG CAG CAG CAG CAG CAG CAA CAA CAA CAG CAG CAG CAG CAA
297993 GCT * 9 25/27 GCT GCT GTT GCT GCT GCT GCT GCT GAT
298114 CTG * 8 22/24 CTG CTG TTG CTG CTG CTG GTG CTG
298411 TAA * 7 20/21 TAA TAG TAA TAA TAA TAA TAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 300941
Total number of repeats detected.............. 34
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 0 1 0 0 0 0 0 0 0 0 0 0
AGC 2 0 2 0 0 0 0 0 0 0 0 0 0
ACG 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCC 1 0 1 0 0 0 0 0 0 0 0 0 0
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 2 2 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 4 3 1 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 5 5 0 0 0 0 0 0 0 0 0 0 0
CAT 4 2 2 0 0 0 0 0 0 0 0 0 0
CAG 3 1 1 1 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 1 GAA + 0 CTT + 0 TTC + 0 TCT = 1
1 AAC + 0 ACA + 5 CAA + 1 GTT + 1 TTG + 1 TGT = 9
1 ATG + 0 TGA + 2 GAT + 4 CAT + 0 ATC + 0 TCA = 7
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 1 TCC = 2
2 AGC + 4 GCA + 3 CAG + 1 GCT + 1 CTG + 1 TGC = 12
1 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7291238|gb|AE003453.1|AE003453 Drosophila melanogaster genomic scaffold 142000013386038 section 2 of 15, complete sequence
Position Repeat Coverage Repeat
8329 CCG * 7 19/21 CCG CCG CCG CCG CCA CCG CCT
9334 TCC * 7 19/21 TCC TCG TCC TCC TCC GCC TCC
9374 CCG * 7 19/21 CCG CCG CCG CCA CCG CCG CCA
51014 TGC * 14 39/42 TGC TGC TGT TGC TGC TGC TGC TGC TGC TGT TGC TGC TGC AGC
61464 CGA * 7 19/21 CGA GGA CGA CGA CGA CGA TGA
61494 CTG * 10 27/30 CTG CTG CTG CTG CTG CTG CTG CTG TTG GCG
61746 CTG * 7 19/21 CTG CTG CTG ATG CTG CTG GTG
61792 TGC * 11 30/33 TGC TGC TGC TGA TGC TGC TGC TGC TGA TGT TGC
61837 TGC * 7 19/21 TGC TGC TGT TGC TGA TGC TGC
71899 AGC * 7 19/21 AGC AAC AGA AGC AGC AGC AGC
121302 CAT * 7 19/21 CAT AAT CAA CAT CAT CAT CAT
122378 CTG * 8 22/24 CTG CTG CTA CTG CTA CTG CTG CTG
123081 AAC * 8 22/24 AAC AAC AAC AAC AAG AAC AAC AAA
126227 TTC * 7 19/21 TTC TTC TTG GTC TTC TTC TTC
134113 GCT * 17 48/51 GCT GCC GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCC GCT GCT GCT TCT
134644 TGC * 8 22/24 TGC TGC TGC TGC TGT TGT TGC TGC
134746 TGC * 8 22/24 TGC AGT TGC TGC TGC TGC TGC TGC
134821 TGC * 11 30/33 TGC TGC TGC TGT TGC TGC TGC TGC TGC TGA TGA
149869 AGC * 7 19/21 AGC TGG AGC AGC AGC AGC AGC
151021 CAA * 8 23/24 CAA CAG CAA CAA CAA CAA CAA CAA
163165 CGA * 10 28/30 CGA TGA CGA CGA CGA CGA CGA CGA CGA CGC
184035 GCA * 9 26/27 GCA GCA GCA GCA GCA GCA ACA GCA GCA
184346 GTA * 7 19/21 GTA GTA GTA GTA GTA GTA TAA
221908 CAA * 7 20/21 CAA CAA CAA CAA CAA CAA CCA
222103 TGG * 7 20/21 TGG TGG TGG TGG TGG AGG TGG
237759 GCA * 7 19/21 GCA ACG GCA GCA GCA GCA GCA
251828 CAG * 14 38/42 CAG CAG CAA CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG GTT
253202 CAG * 9 25/27 CAG CAG CAA CAG CAG CAG CAG CAG CAA
253627 GCA * 9 25/27 GCA GCA GCA ACA GCA GCA GCA TCA GCA
254158 GCA * 8 23/24 GCA GCA GCA ACA GCA GCA GCA GCA
254269 GCA * 10 27/30 GCA GCA GCA ACA GCA GCA GCA GCA ACA ACA
269435 GCT * 8 22/24 GCT GCT GCT GCT CCT GCT GCA GCT
277719 CAA * 8 22/24 CAA CAA CAA TAA CAA CAG CAA CAA
277865 TCT * 7 19/21 TCT TCT TCT TCT TCT TCC TCC
283494 CAT * 7 19/21 CAT CAT CAT CAT CAT CAT CGG
291790 TGC * 10 27/30 TGC TTC TAC TGC TGC TGC TGC TGC TGC TGG
-----------------------------------------------------------------------------------------
Total sequence length......................... 302547
Total number of repeats detected.............. 36
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TTC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 7 3 3 1 0 0 0 0 0 0 0 0 0
TCT 1 1 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 5 4 1 0 0 0 0 0 0 0 0 0 0
GCT 2 1 0 0 1 0 0 0 0 0 0 0 0
CAA 3 3 0 0 0 0 0 0 0 0 0 0 0
CAT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 2 1 0 1 0 0 0 0 0 0 0 0 0
CTG 3 2 1 0 0 0 0 0 0 0 0 0 0
CGA 2 1 1 0 0 0 0 0 0 0 0 0 0
CCG 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 1 TTC + 1 TCT = 2
1 AAC + 0 ACA + 3 CAA + 0 GTT + 0 TTG + 0 TGT = 4
0 ATG + 0 TGA + 0 GAT + 2 CAT + 0 ATC + 0 TCA = 2
0 AGT + 1 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 1 TCC = 1
2 AGC + 5 GCA + 2 CAG + 2 GCT + 3 CTG + 7 TGC = 21
0 ACG + 2 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 2
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 1 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 2 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7291191|gb|AE003452.1|AE003452 Drosophila melanogaster genomic scaffold 142000013386038 section 1 of 15, complete sequence
Position Repeat Coverage Repeat
11089 CAC * 7 19/21 CAC GAC TAC CAC CAC CAC CAC
11147 CCA * 8 23/24 CCA CCA CCA CCA CCA CCA CCA CCC
11195 CCA * 12 33/36 CCA CCC CCA CCA CCA CCA CCA CCA CTA CCA CCA CCG
23264 ATT * 7 19/21 ATT ATT ATT ATG ATT TTT ATT
33935 GCA * 7 19/21 GCA GCA ACA TCA GCA GCA GCA
58488 TGC * 7 19/21 TGC TGC AGC TGC TGC GGC TGC
91519 GCT * 7 19/21 GCT CCT GCT GCC GCT GCT GCT
95286 CAG * 7 19/21 CAG AAG CAG CAG CAG GAG CAG
108506 TGT * 7 19/21 TGT TGT TGT TGT TGT TAT TAT
129141 TCC * 7 20/21 TCC TCC TCC TCC TCC TCC TTC
140975 CAG * 8 22/24 CAG CAG CAG CAG CAA CAG CAA CAG
153832 GCC * 7 19/21 GCC ACC GCC ACC GCC GCC GCC
160063 TAT * 7 21/21 TAT TAT TAT TAT TAT TAT TAT
176312 TGC * 7 21/21 TGC TGC TGC TGC TGC TGC TGC
176354 TGC * 7 20/21 TGC TGC TGC TGC TGC TGA TGC
199464 GAG * 7 19/21 GAG GAG GAG GAC GAC GAG GAG
219956 CAG * 7 19/21 CAG CAG CAA CAG TAG CAG CAG
220452 GCA * 7 21/21 GCA GCA GCA GCA GCA GCA GCA
222521 CAG * 8 22/24 CAG CAA CAA CAG CAG CAG CAG CAG
222551 CAG * 8 22/24 CAG CAG CAG CAG CCC CAG CAG CAG
222793 GCA * 7 19/21 GCA GCA GCT TCA GCA GCA GCA
222890 CAG * 13 37/39 CAG CAG CAG CAG CAG CAA CAA CAG CAG CAG CAG CAG CAG
283294 CCG * 7 19/21 CCG CCG CCG CCG CCT CCG CCA
-----------------------------------------------------------------------------------------
Total sequence length......................... 305505
Total number of repeats detected.............. 23
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 3 3 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 3 3 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 6 5 0 1 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 2 1 1 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 1 ATT + 0 TTA + 1 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 1 TGT = 1
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 1 TCC = 2
0 AGC + 3 GCA + 6 CAG + 1 GCT + 0 CTG + 3 TGC = 13
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 2 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 3
0 GGC + 0 GCG + 0 CGG + 1 GCC + 1 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
-----------------------------------------------------------------------------------------
Tri-nucleotide repeats in Drosophila melanogaster Chromosome-Arm-2R Genomic Scaffolds
Minimum tri-nucleotide repeating units = 7 (allowing maximum of 10% mismatch)
Total 129 sequences searched with a total of 21068156 bp length
Total 1664 repeats covering 38201 / 41622 base pairs
Length distribution of all tri-nucleotide repeats
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
no. of repeat-units 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 >=40
total repeats 810 426 84 135 93 41 13 23 13 2 5 12 1 1 2 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Length distribution of all tri-nucleotide repeats
No. of repeat units> 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
total repeats--> 1320 269 49 19 4 0 3 0 0 0 0 0
AAT 23 3 2 0 0 0 0 0 0 0 0 0
AAG 9 0 0 0 0 0 0 0 0 0 0 0
AAC 27 4 1 0 0 0 0 0 0 0 0 0
ATA 21 4 0 6 0 0 0 0 0 0 0 0
ATT 13 3 1 1 0 0 0 0 0 0 0 0
ATG 13 6 0 0 0 0 0 0 0 0 0 0
ATC 12 1 2 0 0 0 0 0 0 0 0 0
AGA 4 0 0 0 0 0 0 0 0 0 0 0
AGT 3 1 0 0 0 0 0 0 0 0 0 0
AGG 10 3 0 0 0 0 0 0 0 0 0 0
AGC 48 16 1 0 0 0 0 0 0 0 0 0
ACA 26 8 0 0 0 0 0 0 0 0 0 0
ACT 1 1 0 0 0 0 0 0 0 0 0 0
ACG 8 0 0 0 0 0 0 0 0 0 0 0
ACC 11 2 0 0 0 0 0 0 0 0 0 0
TAA 11 3 0 0 0 0 0 0 0 0 0 0
TAT 22 1 0 4 0 0 0 0 0 0 0 0
TAG 3 1 0 0 0 0 0 0 0 0 0 0
TAC 5 0 0 0 0 0 0 0 0 0 0 0
TTA 21 3 1 0 0 0 0 0 0 0 0 0
TTG 32 2 1 0 1 0 0 0 0 0 0 0
TTC 6 0 0 0 0 0 0 0 0 0 0 0
TGA 18 2 0 0 0 0 0 0 0 0 0 0
TGT 38 4 3 0 0 0 0 0 0 0 0 0
TGG 16 6 0 0 0 0 0 0 0 0 0 0
TGC 151 38 12 2 0 0 1 0 0 0 0 0
TCA 25 2 1 0 0 0 0 0 0 0 0 0
TCT 3 0 0 0 0 0 0 0 0 0 0 0
TCG 4 0 1 0 0 0 0 0 0 0 0 0
TCC 17 3 0 0 0 0 0 0 0 0 0 0
GAA 6 0 0 0 0 0 0 0 0 0 0 0
GAT 27 5 2 0 0 0 0 0 0 0 0 0
GAG 21 3 0 0 0 0 0 0 0 0 0 0
GAC 11 0 0 0 0 0 0 0 0 0 0 0
GTA 4 0 0 0 0 0 0 0 0 0 0 0
GTT 34 11 0 0 0 0 0 0 0 0 0 0
GTG 8 0 1 0 0 0 0 0 0 0 0 0
GTC 5 1 0 0 0 0 0 0 0 0 0 0
GGA 15 4 1 0 0 0 0 0 0 0 0 0
GGT 16 2 0 0 0 0 0 0 0 0 0 0
GGC 11 1 0 0 0 0 0 0 0 0 0 0
GCA 100 25 2 0 0 0 2 0 0 0 0 0
GCT 87 15 2 1 1 0 0 0 0 0 0 0
GCG 6 0 0 0 0 0 0 0 0 0 0 0
GCC 8 1 0 0 0 0 0 0 0 0 0 0
CAA 57 9 2 0 0 0 0 0 0 0 0 0
CAT 34 4 1 0 0 0 0 0 0 0 0 0
CAG 101 29 9 3 2 0 0 0 0 0 0 0
CAC 15 1 1 1 0 0 0 0 0 0 0 0
CTT 10 1 0 0 0 0 0 0 0 0 0 0
CTG 66 22 2 1 0 0 0 0 0 0 0 0
CTC 24 5 0 0 0 0 0 0 0 0 0 0
CGA 5 1 0 0 0 0 0 0 0 0 0 0
CGT 3 2 0 0 0 0 0 0 0 0 0 0
CGG 5 0 0 0 0 0 0 0 0 0 0 0
CGC 1 1 0 0 0 0 0 0 0 0 0 0
CCA 16 5 0 0 0 0 0 0 0 0 0 0
CCT 13 4 0 0 0 0 0 0 0 0 0 0
CCG 10 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------------------------------------
-----------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes in all sequences
28 AAT + 31 ATA + 14 TAA + 18 ATT + 25 TTA + 27 TAT = 143
9 AAG + 4 AGA + 6 GAA + 11 CTT + 6 TTC + 3 TCT = 39
32 AAC + 34 ACA + 68 CAA + 45 GTT + 36 TTG + 45 TGT = 260
19 ATG + 20 TGA + 34 GAT + 39 CAT + 15 ATC + 28 TCA = 155
4 AGT + 4 GTA + 4 TAG + 2 ACT + 0 CTA + 5 TAC = 19
13 AGG + 20 GGA + 24 GAG + 17 CCT + 29 CTC + 20 TCC = 123
65 AGC + 129 GCA + 144 CAG + 106 GCT + 91 CTG + 204 TGC = 739
8 ACG + 6 CGA + 11 GAC + 5 CGT + 6 GTC + 5 TCG = 41
13 ACC + 21 CCA + 18 CAC + 18 GGT + 9 GTG + 22 TGG = 101
12 GGC + 6 GCG + 5 CGG + 9 GCC + 10 CCG + 2 CGC = 44
-----------------------------------------------------------------------------------------
Frequency distribution of repeats longer than 40 bp
2 AAT + 6 ATA + 0 TAA + 2 ATT + 0 TTA + 4 TAT = 14
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 1 CAA + 0 GTT + 2 TTG + 1 TGT = 5
0 ATG + 0 TGA + 2 GAT + 1 CAT + 0 ATC + 1 TCA = 4
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 1
0 AGC + 3 GCA + 13 CAG + 4 GCT + 2 CTG + 12 TGC = 34
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 1 TCG = 1
0 ACC + 0 CCA + 2 CAC + 0 GGT + 1 GTG + 0 TGG = 3
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Total repeats longer than 40 bp = 62
-----------------------------------------------------------------------------------------
Sequence-wise distribution of tri-nucleotide repeats
-----------------------------------------------------------------------------------------
Sequence Sequence-length Total-repeats
gi|7289019|gb|AE0029 3612 0
gi|7289079|gb|AE0030 19141 0
gi|7289475|gb|AE0030 29176 0
gi|7289453|gb|AE0032 7951 0
gi|7289112|gb|AE0033 43718 1
gi|7289300|gb|AE0025 11918 0
gi|7289520|gb|AE0026 2655 0
gi|7289039|gb|AE0026 12312 0
gi|7288934|gb|AE0026 13170 1
gi|7289090|gb|AE0026 24153 0
gi|7288943|gb|AE0026 32417 0
gi|7288917|gb|AE0027 1893 0
gi|7289853|gb|AE0027 107231 1
gi|7289862|gb|AE0027 62674 0
gi|7289517|gb|AE0027 4416 0
gi|7289299|gb|AE0027 32269 0
gi|7289417|gb|AE0028 3603 0
gi|7289767|gb|AE0028 16864 0
gi|7288929|gb|AE0029 3000 0
gi|7289383|gb|AE0029 21261 0
gi|7288949|gb|AE0029 1824 0
gi|7288953|gb|AE0029 14708 0
gi|7289359|gb|AE0029 19947 0
gi|7289183|gb|AE0029 3372 0
gi|7289437|gb|AE0029 43487 1
gi|7289322|gb|AE0029 19750 0
gi|7289200|gb|AE0029 26448 0
gi|7289372|gb|AE0029 13643 0
gi|7289348|gb|AE0030 17194 0
gi|7289338|gb|AE0030 26058 1
gi|7289553|gb|AE0030 1073 0
gi|7288979|gb|AE0030 59055 1
gi|7289342|gb|AE0030 29994 0
gi|7289208|gb|AE0030 1546 0
gi|7289130|gb|AE0030 55603 2
gi|7289411|gb|AE0025 1058 0
gi|7289416|gb|AE0026 1239 1
gi|7289156|gb|AE0026 4403 0
gi|7289408|gb|AE0026 1527 0
gi|7289468|gb|AE0030 1019 0
gi|7289446|gb|AE0030 22669 0
gi|7289145|gb|AE0030 22016 1
gi|7289388|gb|AE0031 1511 0
gi|7289263|gb|AE0027 40796 1
gi|7289785|gb|AE0030 3738 0
gi|7289275|gb|AE0026 2000 0
gi|7289053|gb|AE0027 19182 0
gi|7289057|gb|AE0030 12708 0
gi|7289223|gb|AE0030 38153 0
gi|7316105|gb|AE0027 0 0
gi|7302256|gb|AE0037 128817 0
gi|7302239|gb|AE0037 307228 7
gi|7302231|gb|AE0037 316735 5
gi|7302205|gb|AE0037 296279 5
gi|7302167|gb|AE0037 313072 9
gi|7289017|gb|AE0030 24781 0
gi|7316098|gb|AE0027 0 0
gi|7302304|gb|AE0037 210451 20
gi|7302263|gb|AE0037 298904 12
gi|7316102|gb|AE0027 0 0
gi|7304243|gb|AE0038 252413 11
gi|7304203|gb|AE0038 262082 31
gi|7304160|gb|AE0038 259764 20
gi|7304109|gb|AE0038 261850 18
gi|7304068|gb|AE0038 263411 29
gi|7304040|gb|AE0038 234905 16
gi|7304001|gb|AE0038 253189 20
gi|7303956|gb|AE0038 259860 26
gi|7303908|gb|AE0038 257324 14
gi|7303875|gb|AE0038 265562 33
gi|7303842|gb|AE0038 261713 15
gi|7303794|gb|AE0038 260916 14
gi|7303755|gb|AE0038 261895 27
gi|7303717|gb|AE0038 258492 33
gi|7303677|gb|AE0038 259920 21
gi|7303662|gb|AE0038 261694 38
gi|7303588|gb|AE0038 291089 38
gi|7303570|gb|AE0038 278196 35
gi|7303542|gb|AE0038 249001 23
gi|7303489|gb|AE0038 262740 20
gi|7303437|gb|AE0038 266350 19
gi|7303396|gb|AE0038 290711 23
gi|7303370|gb|AE0038 272870 28
gi|7303326|gb|AE0038 237528 24
gi|7303288|gb|AE0038 264644 32
gi|7303263|gb|AE0038 262257 21
gi|7303233|gb|AE0038 260779 51
gi|7303189|gb|AE0038 240495 32
gi|7303162|gb|AE0038 260713 22
gi|7303119|gb|AE0038 258778 10
gi|7303102|gb|AE0038 257946 31
gi|7303071|gb|AE0038 259379 10
gi|7303048|gb|AE0038 258873 32
gi|7303026|gb|AE0038 260968 30
gi|7302975|gb|AE0038 262173 30
gi|7302923|gb|AE0038 260067 13
gi|7302890|gb|AE0038 268219 14
gi|7302851|gb|AE0038 270307 13
gi|7302807|gb|AE0038 259817 13
gi|7302766|gb|AE0038 282588 36
gi|7302706|gb|AE0038 262401 7
gi|7302679|gb|AE0038 272650 30
gi|7302632|gb|AE0038 267271 44
gi|7302581|gb|AE0037 277015 13
gi|7302535|gb|AE0037 261090 31
gi|7302512|gb|AE0037 287859 30
gi|7302472|gb|AE0037 268420 18
gi|7302434|gb|AE0037 260400 12
gi|7302424|gb|AE0037 261083 8
gi|7302408|gb|AE0037 263693 28
gi|7302377|gb|AE0037 261900 25
gi|7302331|gb|AE0037 260580 19
gi|7288937|gb|AE0030 20167 1
gi|7316096|gb|AE0025 0 0
gi|7291893|gb|AE0034 283099 6
gi|7291836|gb|AE0034 328500 23
gi|7291775|gb|AE0034 306848 18
gi|7291737|gb|AE0034 299975 44
gi|7291637|gb|AE0034 300542 18
gi|7291588|gb|AE0034 298616 28
gi|7291543|gb|AE0034 297907 24
gi|7291495|gb|AE0034 299572 22
gi|7291432|gb|AE0034 300917 17
gi|7291400|gb|AE0034 290792 25
gi|7291355|gb|AE0034 298464 27
gi|7291326|gb|AE0034 302502 18
gi|7291292|gb|AE0034 300941 34
gi|7291238|gb|AE0034 302547 36
gi|7291191|gb|AE0034 305505 23
-----------------------------------------------------------------------------------------
© Division of Biochemical Sciences, National Chemical Laboratory, Pune 411008, INDIA