Tri-Nucleotide Repeats in Genomic Sequences
Tri-Nucleotide Repeats in
Drosophila melanogaster Chromosome-Arm-2R Genomic Scaffolds
Genomic sequence
gi|7289019|gb|AE002937.1|AE002937 Drosophila melanogaster genomic scaffold 142000013385320, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 3612
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289079|gb|AE003017.1|AE003017 Drosophila melanogaster genomic scaffold 142000013385367, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 19141
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289475|gb|AE003048.1|AE003048 Drosophila melanogaster genomic scaffold 142000013385699, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 29176
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289453|gb|AE003279.1|AE003279 Drosophila melanogaster genomic scaffold 142000013385680, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 7951
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289112|gb|AE003322.1|AE003322 Drosophila melanogaster genomic scaffold 142000013385396, complete sequence
Position Repeat Coverage Repeat
42513 GAA * 7 19/21 GAA GAA GAG GAA GAA GAT GAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 43718
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 1 GAA + 0 CTT + 0 TTC + 0 TCT = 1
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 0
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7289300|gb|AE002594.1|AE002594 Drosophila melanogaster genomic scaffold 142000013385553, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 11918
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289520|gb|AE002621.1|AE002621 Drosophila melanogaster genomic scaffold 142000013385737, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 2655
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289039|gb|AE002630.1|AE002630 Drosophila melanogaster genomic scaffold 142000013385333, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 12312
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7288934|gb|AE002639.1|AE002639 Drosophila melanogaster genomic scaffold 142000013385246, complete sequence
Position Repeat Coverage Repeat
2188 ATA * 18 49/54 ATA ATA ATA ACA ATA ATA ATA ATA ATT ATG ATA ATA ATA TTA ATA ATA ATT ATA
-----------------------------------------------------------------------------------------
Total sequence length......................... 13170
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 1 0 0 0 1 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 0
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7289090|gb|AE002666.1|AE002666 Drosophila melanogaster genomic scaffold 142000013385377, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 24153
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7288943|gb|AE002691.1|AE002691 Drosophila melanogaster genomic scaffold 142000013385255, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 32417
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7288917|gb|AE002726.1|AE002726 Drosophila melanogaster genomic scaffold 142000013385230, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1893
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289853|gb|AE002751.1|AE002751 Drosophila melanogaster genomic scaffold 142000013386031, complete sequence
Position Repeat Coverage Repeat
847 TAA * 7 19/21 TAA TAA TAA TAA TAA TAA GTA
-----------------------------------------------------------------------------------------
Total sequence length......................... 107231
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 0
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7289862|gb|AE002760.1|AE002760 Drosophila melanogaster genomic scaffold 142000013386034, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 62674
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289517|gb|AE002761.1|AE002761 Drosophila melanogaster genomic scaffold 142000013385734, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 4416
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289299|gb|AE002770.1|AE002770 Drosophila melanogaster genomic scaffold 142000013385552, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 32269
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289417|gb|AE002806.1|AE002806 Drosophila melanogaster genomic scaffold 142000013385651, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 3603
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289767|gb|AE002892.1|AE002892 Drosophila melanogaster genomic scaffold 142000013385959, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 16864
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7288929|gb|AE002919.1|AE002919 Drosophila melanogaster genomic scaffold 142000013385241, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 3000
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289383|gb|AE002935.1|AE002935 Drosophila melanogaster genomic scaffold 142000013385620, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 21261
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7288949|gb|AE002944.1|AE002944 Drosophila melanogaster genomic scaffold 142000013385261, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1824
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7288953|gb|AE002952.1|AE002952 Drosophila melanogaster genomic scaffold 142000013385263, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 14708
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289359|gb|AE002960.1|AE002960 Drosophila melanogaster genomic scaffold 142000013385601, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 19947
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289183|gb|AE002968.1|AE002968 Drosophila melanogaster genomic scaffold 142000013385462, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 3372
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289437|gb|AE002976.1|AE002976 Drosophila melanogaster genomic scaffold 142000013385668, complete sequence
Position Repeat Coverage Repeat
39243 ATA * 7 19/21 ATA ATA ATA ATA ATA ATA TTT
-----------------------------------------------------------------------------------------
Total sequence length......................... 43487
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 0
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7289322|gb|AE002980.1|AE002980 Drosophila melanogaster genomic scaffold 142000013385568, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 19750
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289200|gb|AE002984.1|AE002984 Drosophila melanogaster genomic scaffold 142000013385479, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 26448
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289372|gb|AE002992.1|AE002992 Drosophila melanogaster genomic scaffold 142000013385609, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 13643
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289348|gb|AE003000.1|AE003000 Drosophila melanogaster genomic scaffold 142000013385592, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 17194
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289338|gb|AE003008.1|AE003008 Drosophila melanogaster genomic scaffold 142000013385583, complete sequence
Position Repeat Coverage Repeat
16614 TAT * 7 19/21 TAT TAT AAT AAT TAT TAT TAT
-----------------------------------------------------------------------------------------
Total sequence length......................... 26058
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 0
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7289553|gb|AE003016.1|AE003016 Drosophila melanogaster genomic scaffold 142000013385767, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1073
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7288979|gb|AE003024.1|AE003024 Drosophila melanogaster genomic scaffold 142000013385289, complete sequence
Position Repeat Coverage Repeat
21958 TAA * 10 27/30 TAA TAA TAA TAT TAA TAA TAA AAA TAA AAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 59055
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
TAA 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 0
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7289342|gb|AE003032.1|AE003032 Drosophila melanogaster genomic scaffold 142000013385587, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 29994
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289208|gb|AE003035.1|AE003035 Drosophila melanogaster genomic scaffold 142000013385487, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1546
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289130|gb|AE003040.1|AE003040 Drosophila melanogaster genomic scaffold 142000013385414, complete sequence
Position Repeat Coverage Repeat
14515 TAT * 7 19/21 TAT CAT TAT TAA TAT TAT TAT
37743 ATT * 8 23/24 ATT ATT ATT ATT ATT ATT ATT ATA
-----------------------------------------------------------------------------------------
Total sequence length......................... 55603
Total number of repeats detected.............. 2
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 1 ATT + 0 TTA + 1 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 0
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7289411|gb|AE002589.1|AE002589 Drosophila melanogaster genomic scaffold 142000013385645, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1058
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289416|gb|AE002607.1|AE002607 Drosophila melanogaster genomic scaffold 142000013385650, complete sequence
Position Repeat Coverage Repeat
257 AAT * 12 33/36 AAT AAT AAT AAT AAC AAT CAT AAT AAT AAT ACT AAT
-----------------------------------------------------------------------------------------
Total sequence length......................... 1239
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 0
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7289156|gb|AE002648.1|AE002648 Drosophila melanogaster genomic scaffold 142000013385436, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 4403
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289408|gb|AE002686.1|AE002686 Drosophila melanogaster genomic scaffold 142000013385643, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1527
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289468|gb|AE003001.1|AE003001 Drosophila melanogaster genomic scaffold 142000013385692, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1019
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289446|gb|AE003056.1|AE003056 Drosophila melanogaster genomic scaffold 142000013385676, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 22669
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289145|gb|AE003064.1|AE003064 Drosophila melanogaster genomic scaffold 142000013385425, complete sequence
Position Repeat Coverage Repeat
16026 ATA * 7 19/21 ATA AAA ATA ATA ATA ATA AAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 22016
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 0
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7289388|gb|AE003195.1|AE003195 Drosophila melanogaster genomic scaffold 142000013385624, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1511
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289263|gb|AE002709.1|AE002709 Drosophila melanogaster genomic scaffold 142000013385535, complete sequence
Position Repeat Coverage Repeat
13218 TTA * 7 20/21 TTA TTA TTA TTA TTA TAA TTA
-----------------------------------------------------------------------------------------
Total sequence length......................... 40796
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 0
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7289785|gb|AE003073.1|AE003073 Drosophila melanogaster genomic scaffold 142000013385973, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 3738
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289275|gb|AE002640.1|AE002640 Drosophila melanogaster genomic scaffold 142000013385546, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 2000
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289053|gb|AE002788.1|AE002788 Drosophila melanogaster genomic scaffold 142000013385347, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 19182
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289057|gb|AE003081.1|AE003081 Drosophila melanogaster genomic scaffold 142000013385349, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 12708
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289223|gb|AE003090.1|AE003090 Drosophila melanogaster genomic scaffold 142000013385502, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 38153
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7316105|gb|AE002769.1|AE002769 Drosophila melanogaster genomic scaffold 142000013386052, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7302256|gb|AE003788.1|AE003788 Drosophila melanogaster genomic scaffold 142000013386052 section 5 of 5, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 128817
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7302239|gb|AE003787.1|AE003787 Drosophila melanogaster genomic scaffold 142000013386052 section 4 of 5, complete sequence
Position Repeat Coverage Repeat
19473 ATT * 10 27/30 ATT ATT TTT ATT ATT ATT ATT ATT ATA ATG
50752 ATA * 12 33/36 ATA ATT ATA ATA ATA ATA ATT ATA ATA ATA ATA CTA
182283 TAT * 7 19/21 TAT TAT TAT TAT TAT TAT CAG
205052 TAA * 7 19/21 TAA TAA TAA TAA TTA TAA TAT
209245 ATT * 7 20/21 ATT TTT ATT ATT ATT ATT ATT
217948 TTA * 7 19/21 TTA TTA TTA TTA TTA ATA ATA
254817 AGT * 7 19/21 AGT AGT AGT AGT ATG AGT AGT
-----------------------------------------------------------------------------------------
Total sequence length......................... 307228
Total number of repeats detected.............. 7
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 1 0 1 0 0 0 0 0 0 0 0 0 0
ATT 2 1 1 0 0 0 0 0 0 0 0 0 0
AGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 1 TAA + 2 ATT + 1 TTA + 1 TAT = 6
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
1 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 0
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7302231|gb|AE003786.1|AE003786 Drosophila melanogaster genomic scaffold 142000013386052 section 3 of 5, complete sequence
Position Repeat Coverage Repeat
18174 GAA * 7 19/21 GAA GAA GAG GAA GAA GAT GAA
45114 CCG * 7 19/21 CCG CCG CCG CCG CAG CCT CCG
100085 ATA * 8 22/24 ATA ATA ATA ATA ATA ATA ATA AAT
272138 CTT * 7 19/21 CTT CAT CTT CTT CCT CTT CTT
282105 TAT * 7 19/21 TAT TAT TAT TAT TAT TAT ATT
-----------------------------------------------------------------------------------------
Total sequence length......................... 316735
Total number of repeats detected.............. 5
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 2
0 AAG + 0 AGA + 1 GAA + 1 CTT + 0 TTC + 0 TCT = 2
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 0
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 1 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7302205|gb|AE003785.1|AE003785 Drosophila melanogaster genomic scaffold 142000013386052 section 2 of 5, complete sequence
Position Repeat Coverage Repeat
54955 CTG * 7 19/21 CTG CCG CTG TTG CTG CTG CTG
97790 TGC * 7 19/21 TGC TCT TGC TGC TGC TGC TGC
163682 TTA * 12 33/36 TTA CTA TTA TTA TTA TTA CTA TTA TTA CTA TTA TTA
183790 TAG * 7 19/21 TAG TAG TAG TAG TAG TTC TAG
266128 ATT * 7 19/21 ATT ATT ATT ATT ATT ATT GTA
-----------------------------------------------------------------------------------------
Total sequence length......................... 296279
Total number of repeats detected.............. 5
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
TAG 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 1 ATT + 1 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 1 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 1 CTG + 1 TGC = 2
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7302167|gb|AE003784.1|AE003784 Drosophila melanogaster genomic scaffold 142000013386052 section 1 of 5, complete sequence
Position Repeat Coverage Repeat
18385 ATG * 8 23/24 ATG ATG ATG ATG GTG ATG ATG ATG
91293 ATA * 7 19/21 ATA TGA ATA ATA ATA ATA ATA
122289 GCA * 10 28/30 GCA GCA GCA GCA GCA GCA GCA ACA GCA ACA
148005 CTG * 11 30/33 CTG CTG CTG CTG CTG CTG GTG CTG CTG CTG AGG
148770 ATG * 8 24/24 ATG ATG ATG ATG ATG ATG ATG ATG
170258 AAT * 15 41/45 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT ATT CTA
188987 CTC * 7 19/21 CTC CTC CTC CTA CTC CAC CTC
205780 TGA * 8 22/24 TGA TGA TGA TGA CGA TGA TGA TGC
256586 TGC * 7 20/21 TGC TGC TGC TGC TGC TGT TGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 313072
Total number of repeats detected.............. 9
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 0 0 1 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 0 1 0 0 0 0 0 0 0 0 0 0
CTG 1 0 1 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
2 ATG + 1 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 1
0 AGC + 1 GCA + 0 CAG + 0 GCT + 1 CTG + 1 TGC = 3
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7289017|gb|AE003098.1|AE003098 Drosophila melanogaster genomic scaffold 142000013385318, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 24781
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7316098|gb|AE002778.1|AE002778 Drosophila melanogaster genomic scaffold 142000013386042, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7302304|gb|AE003790.1|AE003790 Drosophila melanogaster genomic scaffold 142000013386042 section 2 of 2, complete sequence
Position Repeat Coverage Repeat
43875 CAC * 7 19/21 CAC CAC CAG CAC CAG CAC CAC
43931 GCA * 12 34/36 GCA GCA GCA GCA GCA GCA ACA GCA ACA GCA GCA GCA
44300 GAC * 8 22/24 GAC GAC GAC GAC GAC AAC GGC GAC
45406 CAG * 7 19/21 CAG CAC CAG CAG CAG CAC CAG
55826 ATA * 11 30/33 ATA CTA ATA ATA ATA ATA ATA ATA ATA ATA CTC
79578 TGA * 8 22/24 TGA TGG CGA TGA TGA TGA TGA TGA
88388 AAT * 7 20/21 AAT AAT AAT AAT AAT AAT AAA
136920 TGC * 7 19/21 TGC TGC TGG TGG TGC TGC TGC
136947 TGC * 7 19/21 TGC TGT TGC TGA TGC TGC TGC
137820 TGC * 8 22/24 TGC TGC TGC TGT TGG TGC TGC TGC
139057 CTG * 7 19/21 CTG TTG CTG CTG TTG CTG CTG
139080 GCT * 8 22/24 GCT GCT GCT GCT GTT GCT GCT GCA
140761 TGC * 11 30/33 TGC TGC TGT TGC TGC TGC TGC TGC TGC AAC TGC
141735 GCT * 7 19/21 GCT GCT GCT GAT GCT GCT GGT
141953 TGT * 7 20/21 TGT TGT TGT TGT TGT TGT GGT
143092 TGC * 7 20/21 TGC TGC TGC TGC TGC TGC TGT
173164 TGT * 8 22/24 TGT TGT TGG TGT TGT TGA TGT TGT
188283 CAT * 8 22/24 CAT CGT CAT CAT CAT CAA CAT CAT
188356 GCA * 7 19/21 GCA ACA GCA GCA GCA GAA GCA
200399 TGT * 7 19/21 TGT TGT TGT TGT TAC TGT TGT
-----------------------------------------------------------------------------------------
Total sequence length......................... 210451
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 0 1 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 3 3 0 0 0 0 0 0 0 0 0 0 0
TGC 5 4 1 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 1 1 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 3 TGT = 3
0 ATG + 1 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 2 GCA + 1 CAG + 2 GCT + 1 CTG + 5 TGC = 11
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7302263|gb|AE003789.1|AE003789 Drosophila melanogaster genomic scaffold 142000013386042 section 1 of 2, complete sequence
Position Repeat Coverage Repeat
34136 ATG * 11 31/33 ATG ATG ATG ATG CTG ATG ATG ATG ATG GTG ATG
53748 AGG * 8 22/24 AGG AGC AGG AGC AGG AGG AGG AGG
58575 CAT * 10 27/30 CAT CGT CAT CAT CCT CAT CAT CAT CAT CGT
62626 TCA * 7 19/21 TCA TCA CCA TCA TCA CCA TCA
119349 AAT * 7 20/21 AAT AAA AAT AAT AAT AAT AAT
122057 CTT * 7 20/21 CTT CGT CTT CTT CTT CTT CTT
123880 CAG * 7 19/21 CAG CAA CAA CAG CAG CAG CAG
175224 GCA * 7 19/21 GCA GCA GCA GCA GGC GCA GCA
239257 TCG * 7 19/21 TCG TCC TCG TCG TCC TCG TCG
239358 ATC * 8 22/24 ATC ATC ATC CTC ATC ATC GTC ATC
285361 GCA * 7 19/21 GCA ACA TCA GCA GCA GCA GCA
286008 TGC * 8 22/24 TGC TGC TGC TTC TGC TGT TGC TGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 298904
Total number of repeats detected.............. 12
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 0 1 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAT 1 0 1 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 1
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
1 ATG + 0 TGA + 0 GAT + 1 CAT + 1 ATC + 1 TCA = 4
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 1
0 AGC + 2 GCA + 1 CAG + 0 GCT + 0 CTG + 1 TGC = 4
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 1 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7316102|gb|AE002787.1|AE002787 Drosophila melanogaster genomic scaffold 142000013386047, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7304243|gb|AE003842.1|AE003842 Drosophila melanogaster genomic scaffold 142000013386047 section 52 of 52, complete sequence
Position Repeat Coverage Repeat
22022 CTG * 8 22/24 CTG CTG CTA CTG CTG CTG CTT CTG
26100 GAT * 7 19/21 GAT GAT GAA AAT GAT GAT GAT
33032 CTG * 7 19/21 CTG GTG CTG CTG CTG CTG TTG
45482 TTG * 8 22/24 TTG TTG TTG TTA TTG TTG TTG TCG
60906 CAG * 7 19/21 CAG CAG CAG GAG CAG CGG CAG
73542 TTC * 7 19/21 TTC TTC TTC ATC TCC TTC TTC
79174 TGC * 7 20/21 TGC TGC CGC TGC TGC TGC TGC
87441 CAG * 8 22/24 CAG CAG CAG CAG AAG CAG CAT CAG
110448 CAA * 7 19/21 CAA CAA CAA CAG CAA CGA CAA
174966 CAT * 7 20/21 CAT CAT CAT CAT CAA CAT CAT
183500 TAT * 8 23/24 TAT TAT TAT TAT TAT TAT TAT TTT
-----------------------------------------------------------------------------------------
Total sequence length......................... 252413
Total number of repeats detected.............. 11
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TTC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CTG 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 1 TTC + 0 TCT = 1
0 AAC + 0 ACA + 1 CAA + 0 GTT + 1 TTG + 0 TGT = 2
0 ATG + 0 TGA + 1 GAT + 1 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 2 CAG + 0 GCT + 2 CTG + 1 TGC = 5
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7304203|gb|AE003841.1|AE003841 Drosophila melanogaster genomic scaffold 142000013386047 section 51 of 52, complete sequence
Position Repeat Coverage Repeat
4351 GGA * 7 19/21 GGA GGA GGA GGA GGA AGA AGA
21293 GGA * 7 19/21 GGA GGC CGA GGA GGA GGA GGA
24165 CTT * 7 19/21 CTT CTT CTT CTT CTG CTT CTC
25233 GGA * 7 19/21 GGA GGA GGA CGA GGA GGA TGA
27916 GAT * 7 19/21 GAT GAT GAT GAT GTT GAT GAG
28734 CCT * 7 19/21 CCT CCT CCT TCT CCT CCC CCT
34598 AGG * 7 19/21 AGG AGG AGG AGG AGG AGG GAG
43351 AAC * 8 22/24 AAC AAC AAA AAC AAC AAC AAC GAC
45745 CAT * 15 43/45 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAC CAT CAT CAG CAT
82728 CGC * 7 19/21 CGC CTC CTC CGC CGC CGC CGC
82838 TGC * 7 19/21 TGC TGC AGC TGC TGC TGA TGC
82895 TGC * 11 31/33 TGC TGC TGC TGT TGC TGC TGC TGC TGG TGC TGC
84417 AGG * 7 19/21 AGG AGG AGT AGG AGG AGG AGC
84589 GGA * 12 33/36 GGA GGA GGA GGA GGA GGA TGA GGA GGA GAA GGA GGC
92142 CCG * 7 19/21 CCG CCG CCG CCG CCG CCG TTG
92254 TGT * 7 20/21 TGT TAT TGT TGT TGT TGT TGT
101336 CTC * 7 19/21 CTC CTC CTC CTC CTC TTC ATC
109835 ACC * 7 19/21 ACC ACC ACC ATC ACC ACC CCC
110241 AGC * 7 19/21 AGC AAC AGC AGC AGC AGC AAC
111550 GTC * 7 19/21 GTC GTC GTC ATC GTC ATC GTC
113406 GTT * 7 19/21 GTT GTA GTT GTG GTT GTT GTT
113473 GTG * 8 22/24 GTG TTG GTG GTG GTG GAG GTG GTG
118046 CAG * 9 26/27 CAG CAG CAG CAG CAG CAG CAG CAT CAG
145983 CAT * 7 19/21 CAT CAT CAT CTT CAT CAT CGT
189917 GTT * 7 20/21 GTT GTT GTT GTT ATT GTT GTT
202863 CAT * 8 22/24 CAT CAT CGT CAT CAT CAT CAC CAT
207058 ATA * 10 29/30 ATA ATA ATA ATA ATT ATA ATA ATA ATA ATA
218726 ACC * 8 22/24 ACC ACT ACC ACC ACC ACC ACC ACT
230823 CCT * 8 22/24 CCT ACT CCT CCT CCT CCT CCG CCT
241490 ATG * 7 19/21 ATG ATG ATG ATG ATG AAG AAG
244194 ATT * 16 44/48 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATA ATT ACT GTG
-----------------------------------------------------------------------------------------
Total sequence length......................... 262082
Total number of repeats detected.............. 31
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 0 1 0 0 0 0 0 0 0 0 0 0
ATT 1 0 0 0 1 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 2 2 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACC 2 2 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 1 1 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 2 2 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTC 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 4 3 1 0 0 0 0 0 0 0 0 0 0
CAT 3 2 0 1 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CGC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 1 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 1
1 AAC + 0 ACA + 0 CAA + 2 GTT + 0 TTG + 1 TGT = 4
1 ATG + 0 TGA + 1 GAT + 3 CAT + 0 ATC + 0 TCA = 5
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
2 AGG + 4 GGA + 0 GAG + 2 CCT + 1 CTC + 0 TCC = 9
1 AGC + 0 GCA + 1 CAG + 0 GCT + 0 CTG + 2 TGC = 4
0 ACG + 0 CGA + 0 GAC + 0 CGT + 1 GTC + 0 TCG = 1
2 ACC + 0 CCA + 0 CAC + 0 GGT + 1 GTG + 0 TGG = 3
0 GGC + 0 GCG + 0 CGG + 0 GCC + 1 CCG + 1 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7304160|gb|AE003840.1|AE003840 Drosophila melanogaster genomic scaffold 142000013386047 section 50 of 52, complete sequence
Position Repeat Coverage Repeat
2192 CAA * 10 27/30 CAA CAA CAA CAA CTA CAA CAA CAA CAA AAC
12221 GTT * 8 23/24 GTT GTT GTT GTT GTT GTT GTT GCT
20713 TGC * 8 23/24 TGC TGC TGC TGC TGC TGC TGC TGT
26700 GTT * 9 25/27 GTT AAT GTT GTT GTT GTT GTT GTT GTT
26790 GTT * 7 19/21 GTT GTT GTT TTT GTT GCT GTT
28859 GGT * 11 31/33 GGT GGT GGT GGT AGT GGT GGT GGT GGT GGT GCT
40873 AGC * 8 22/24 AGC AGG AGA AGC AGC AGC AGC AGC
40914 CAG * 11 30/33 CAG CAG CAA CAG CAG CAG CAG CAG CAT CAG CAA
40950 CAG * 11 30/33 CAG CAG CAG CAG CAG CAG CAG CGT CAG CAT CAG
40997 GCA * 8 23/24 GCA GCA GCA ACA GCA GCA GCA GCA
41694 GCA * 7 19/21 GCA GCA GCA GCA GCA GCA ACG
73860 ATA * 10 27/30 ATA ATA ATA ATA TTA ATA ATA ATA ATA TTG
83286 CAG * 7 19/21 CAG CAG CAG TAG CAG CAG CAA
87134 TGT * 8 22/24 TGT TGT TGT TGT TCT TGT TGC TGT
92440 CCT * 12 33/36 CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CAG TCT
142925 TTA * 7 19/21 TTA TTA TTA TTA TTA CTA TTG
148175 TGC * 7 19/21 TGC TGC TGC TGC TGT TGG TGC
167360 TCA * 9 25/27 TCA TCA TCA TCA TCA TCA TCA TCG TCG
191786 GGA * 14 38/42 GGA GGA GGA GGA GGC GGA AGA GGA GGA CGA GGA GGA GGA GGC
191970 CCT * 7 20/21 CCT CCT CCT CTT CCT CCT CCT
-----------------------------------------------------------------------------------------
Total sequence length......................... 259764
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 1 0 1 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 3 3 0 0 0 0 0 0 0 0 0 0 0
GGA 1 0 0 1 0 0 0 0 0 0 0 0 0
GGT 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 1 0 1 0 0 0 0 0 0 0 0 0 0
CAG 3 1 2 0 0 0 0 0 0 0 0 0 0
CCT 2 1 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 1 CAA + 3 GTT + 0 TTG + 1 TGT = 5
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 1 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 0 GAG + 2 CCT + 0 CTC + 0 TCC = 3
1 AGC + 2 GCA + 3 CAG + 0 GCT + 0 CTG + 2 TGC = 8
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 1 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7304109|gb|AE003839.1|AE003839 Drosophila melanogaster genomic scaffold 142000013386047 section 49 of 52, complete sequence
Position Repeat Coverage Repeat
4241 CAC * 7 19/21 CAC CAC CAT CAC CAC CAC CGC
29126 CGA * 7 19/21 CGA CGA CGA CGA CGA CGT CGT
43001 AGC * 7 20/21 AGC AGC AGC AGC AGC AGC AGG
48319 CAG * 15 41/45 CAG CAG CAG CAA CAG CAG CAG CAA CAG CAG CAG CAG CAG CAA CAC
48367 CAG * 8 22/24 CAG CAG CAG CAT CAG CAG CAA CAG
56855 ACA * 7 19/21 ACA ACA ACA ACA ACA ACA ATT
96743 GGT * 7 20/21 GGT GGT GGT GGT GGT GGT GGC
107797 CTG * 8 22/24 CTG CTG CTG CTG CTG CTA CTA CTG
137987 CTG * 10 27/30 CTG CTC CTG TTG CTG CTG CTG CTG CTG CTC
138590 TGC * 8 22/24 TGC TGC TGC TGC CGC TGC TGC AGC
138659 TGC * 7 19/21 TGC TGA TAC TGC TGC TGC TGC
142017 GCT * 8 22/24 GCT GCT GCT GCT GCT TCT GCT GGT
142084 CTG * 7 19/21 CTG CAG TTG CTG CTG CTG CTG
142118 TGC * 7 19/21 TGC TGC TGT TGT TGC TGC TGC
143113 TGC * 8 22/24 TGC TGC TGC TCC GGC TGC TGC TGC
150078 AGC * 11 30/33 AGC AGC AGC AAC AGC AAC AGC AGC AGC AGC ATC
200129 CAG * 7 19/21 CAG CAG CAG CAA CAG CAG CAA
227038 ATA * 7 19/21 ATA ATA ATA ATA ATA ATA TTT
-----------------------------------------------------------------------------------------
Total sequence length......................... 261850
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 1 1 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 4 4 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 3 2 0 1 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 3 2 1 0 0 0 0 0 0 0 0 0 0
CGA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
2 AGC + 0 GCA + 3 CAG + 1 GCT + 3 CTG + 4 TGC = 13
0 ACG + 1 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 1 CAC + 1 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7304068|gb|AE003838.1|AE003838 Drosophila melanogaster genomic scaffold 142000013386047 section 48 of 52, complete sequence
Position Repeat Coverage Repeat
7764 TCA * 8 22/24 TCA TCA TCG TCA TCA TCA TCA TCG
7788 TCG * 7 19/21 TCG TAG TCG TCG TCG TCG TCA
8092 TGC * 7 20/21 TGC TGC TGC TTC TGC TGC TGC
11266 TGG * 7 19/21 TGG TGG TGG TGG TGG CGG TGA
19258 CGT * 7 19/21 CGT CGT CGT TGT CGT CAT CGT
20331 GAC * 7 19/21 GAC GAC GGC AAC GAC GAC GAC
23815 GCA * 7 19/21 GCA GCA GCA GAA GCA GCA ACA
46199 TGG * 7 19/21 TGG TAG TGG TGG TGC TGG TGG
53263 CTC * 10 27/30 CTC CTC TTC CTC CTC CTG CTC CTC CTC CGC
62178 CTC * 7 19/21 CTC CTC CTC CTC CTC ATC GTC
63522 AAT * 7 20/21 AAT AAC AAT AAT AAT AAT AAT
68791 CTT * 7 19/21 CTT CTT TTT CTT CTC CTT CTT
127039 GCA * 7 19/21 GCA GCA GCA ACA GCA GCA ACA
127064 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAG TCG
224353 AAC * 7 19/21 AAC AAC AAC AAC AAG AAC CAC
229629 TTG * 7 19/21 TTG ATG TTG TTG TTG TTG TGG
229900 GTT * 7 19/21 GTT GTT GTT GTT ATT GTT GTG
233466 CCA * 8 22/24 CCA CCA CCA CTA CCA GCA CCA CCA
237893 GCC * 7 19/21 GCC GCC GCC TCC CCC GCC GCC
242353 TTA * 13 36/39 TTA TTA TTA TTA TTG TTG TTA TTA TTA TTA TTA TTA TTT
244974 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC TAC TCC
247194 GTT * 11 30/33 GTT GTT GTT GTT ATT GTT GTT GTT GGT GGT GTT
247239 GCA * 7 20/21 GCA GCA GAA GCA GCA GCA GCA
248727 GAT * 7 19/21 GAT TAT GGT GAT GAT GAT GAT
250837 GGC * 10 28/30 GGC GGC GGC GGC GGC AGC AGC GGC GGC GGC
251445 CGG * 7 19/21 CGG CGG CGG CAG CAG CGG CGG
251519 CAG * 7 20/21 CAG CAG CAG CAG CAG CAA CAG
251774 CAA * 9 25/27 CAA CAA CAA CAA CAA TAA TAA CAA CAA
252030 CAC * 9 25/27 CAC CAT CAC CAC CAC CAT CAC CAC CAC
-----------------------------------------------------------------------------------------
Total sequence length......................... 263411
Total number of repeats detected.............. 29
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 0 0 1 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 2 1 1 0 0 0 0 0 0 0 0 0 0
GGC 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 3 3 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 2 1 1 0 0 0 0 0 0 0 0 0 0
CGT 1 1 0 0 0 0 0 0 0 0 0 0 0
CGG 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 1
1 AAC + 0 ACA + 1 CAA + 2 GTT + 1 TTG + 0 TGT = 5
0 ATG + 0 TGA + 1 GAT + 0 CAT + 0 ATC + 1 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 2 CTC + 0 TCC = 2
0 AGC + 3 GCA + 2 CAG + 0 GCT + 0 CTG + 2 TGC = 7
0 ACG + 0 CGA + 1 GAC + 1 CGT + 0 GTC + 1 TCG = 3
0 ACC + 1 CCA + 1 CAC + 0 GGT + 0 GTG + 2 TGG = 4
1 GGC + 0 GCG + 1 CGG + 1 GCC + 0 CCG + 0 CGC = 3
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7304040|gb|AE003837.1|AE003837 Drosophila melanogaster genomic scaffold 142000013386047 section 47 of 52, complete sequence
Position Repeat Coverage Repeat
21285 CAG * 7 19/21 CAG CAC CAG CAG CAA CAG CAG
152794 CTG * 11 31/33 CTG CTG CTG CTG TTG CTG CTG CTG CTG CTG ATG
152991 GCT * 8 22/24 GCT GCT GCT GCT GCT GTT GTT GCT
153737 ACT * 7 19/21 ACT ACT ACT ACA ACT ACT ACA
154269 TGC * 7 19/21 TGC GGA TGC TGC TGC TGC TGC
155439 GTG * 8 22/24 GTG GTG GGG ATG GTG GTG GTG GTG
158500 ACC * 7 19/21 ACC AGC CCC ACC ACC ACC ACC
195457 TGT * 7 19/21 TGT TGT TAT TGT TGT TGT TGG
195601 TGC * 10 27/30 TGC TGC TGC TGT TGC CGC TGC TGC TGC CGC
198585 AGC * 10 27/30 AGC AGC AGC AGC AGC AGC AGC GGC AAC AAC
198873 TGC * 13 36/39 TGC TGC TGC TGC TGC TGC TGC TGC AAC TGC TGC TGC GGC
200307 TAA * 7 19/21 TAA AAA AAA TAA TAA TAA TAA
208609 GCT * 8 22/24 GCT ACT TCT GCT GCT GCT GCT GCT
211818 AAT * 8 22/24 AAT GAT AAT AAT AAT AAT AAC AAT
215889 AGC * 7 19/21 AGC AGC AGC AAC AAC AGC AGC
223332 ATC * 8 22/24 ATC CGC ATC ATC ATC ATC ATC ATC
-----------------------------------------------------------------------------------------
Total sequence length......................... 234905
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 1 1 0 0 0 0 0 0 0 0 0 0
ACT 1 1 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 3 1 1 1 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 1 TAA + 0 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 1 TGT = 1
0 ATG + 0 TGA + 0 GAT + 0 CAT + 1 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 1 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
2 AGC + 0 GCA + 1 CAG + 2 GCT + 1 CTG + 3 TGC = 9
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
1 ACC + 0 CCA + 0 CAC + 0 GGT + 1 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7304001|gb|AE003836.1|AE003836 Drosophila melanogaster genomic scaffold 142000013386047 section 46 of 52, complete sequence
Position Repeat Coverage Repeat
7732 TTG * 7 19/21 TTG TTC TTG TTC TTG TTG TTG
7771 TGT * 7 19/21 TGT TGT TGC TGT TGT TGT TGC
33721 GGA * 7 19/21 GGA GGA GGA AGA GGA GCA GGA
36884 TTA * 7 19/21 TTA TAA TTA TTA TTA TTA TTG
49400 ATA * 7 19/21 ATA ATC ATA ACA ATA ATA ATA
49714 TTA * 7 19/21 TTA TTA TTA TTA TTT TTA TTG
154873 ATG * 8 24/24 ATG ATG ATG ATG ATG ATG ATG ATG
155169 TTA * 11 30/33 TTA TTA TTG TTA TTG TTA TTA TTA TTA TTA TTG
173574 CTC * 7 19/21 CTC GTC CTC CTC CTC ATC CTC
173633 CCT * 7 19/21 CCT CCT CAT CCT CCT CCT CGT
174163 TGC * 11 30/33 TGC TGC TGC TGC TGC TGT TGC TGC TGC TGA TGT
174607 TGT * 7 19/21 TGT TGC TGC TGT TGT TGT TGT
176932 GCT * 8 22/24 GCT GCT GCT GCT GCT GCT GCT GGA
177051 GCA * 8 22/24 GCA GCA GCA GCT GCA GCA GCA GCC
177192 TGC * 7 19/21 TGC TGT TGC TGC TGC TGC TGT
179279 GTG * 7 20/21 GTG GTG GTT GTG GTG GTG GTG
180580 TAT * 7 20/21 TAT TAT TAT TAT TAT TAT TTT
206054 GCA * 11 30/33 GCA GCA ACA ACA GCA GCA GCA GCA GCA GCA ACA
211152 ATG * 7 19/21 ATG ATG ATA ATG ATG ATG ACG
246281 TCC * 7 19/21 TCC TCC AGC TCC TCC TCC TCC
-----------------------------------------------------------------------------------------
Total sequence length......................... 253189
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 2 2 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 3 2 1 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 2 1 1 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 1 1 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 3 TTA + 1 TAT = 5
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 1 TTG + 2 TGT = 3
2 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 0 GAG + 1 CCT + 1 CTC + 1 TCC = 4
0 AGC + 2 GCA + 0 CAG + 1 GCT + 0 CTG + 2 TGC = 5
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 1 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7303956|gb|AE003835.1|AE003835 Drosophila melanogaster genomic scaffold 142000013386047 section 45 of 52, complete sequence
Position Repeat Coverage Repeat
5129 CAG * 15 41/45 CAG CAG CAG CAG CAG CCG CCG CAG CAG CAG CAG CAG CAA CAG CAT
14151 CTG * 7 19/21 CTG CTG CTG CTT CTG GTG CTG
25639 TGC * 8 22/24 TGC TGT TGT TGC TGC TGC TGC TGC
28566 CTG * 11 30/33 CTG CTG CTG CTG CTA CTG CTG CTG CTG CCG GTG
28955 GGT * 7 19/21 GGT GGT GGT GTT GGC GGT GGT
30097 TGC * 12 33/36 TGC TGC TGC TGC AGA TGC TGC TGC TGC TGC AGC TGC
38870 GCA * 8 23/24 GCA GAA GCA GCA GCA GCA GCA GCA
47250 TCC * 7 19/21 TCC TCC TCC TCC TCC TCC AGC
51745 CAC * 8 22/24 CAC CAG CAC CAC CAC CAC CAC CAA
59758 ACA * 10 27/30 ACA ACA ACA ACA ACA ACA ACC ACA ACA CCT
60526 CAG * 7 19/21 CAG CAG CAG CAG CAG CAC CAC
66509 GCC * 8 22/24 GCC GCC GCC ACC GCC GCC GCC CCC
70436 GCA * 7 19/21 GCA GCA ATA GCA GCA GCA GCA
98146 CTC * 7 19/21 CTC CTC CTC CTC CGC CTG CTC
100693 TGC * 8 22/24 TGC TGC TGA TGC TGC TAC TGC TGC
108513 TAA * 7 19/21 TAA TAA TAT TAA TAT TAA TAA
131723 GCT * 8 22/24 GCT GCT GCT GAT GTT GCT GCT GCT
132012 CTG * 7 19/21 CTG CTG TTG CTG CTG CTG GTG
158279 TGC * 8 22/24 TGC TGA TGC TGC TGC TGC TGC TGG
168931 TCC * 7 19/21 TCC ACC TCC TCG TCC TCC TCC
203579 GCT * 7 19/21 GCT GGT GCT ACT GCT GCT GCT
203865 TGC * 17 47/51 TGC TGA AGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGT TGC TGC TGT
215618 GCT * 7 20/21 GCT GTT GCT GCT GCT GCT GCT
221088 AAT * 10 27/30 AAT AAT AGT CAT AAT AAT AAT AAT AAT AAA
253596 CCG * 8 22/24 CCG CCG CCG CCG CCG CCG CCG CAT
257085 TGC * 15 41/45 TGC TGC TGC TGC TGT TGC TGC TGC TGT TGC TGC TGA TGC TGC TGG
-----------------------------------------------------------------------------------------
Total sequence length......................... 259860
Total number of repeats detected.............. 26
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 0 1 0 0 0 0 0 0 0 0 0 0
ACA 1 0 1 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 6 3 1 1 1 0 0 0 0 0 0 0 0
TCC 2 2 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
GCT 3 3 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 1 0 1 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 3 2 1 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 1 TAA + 0 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 2 TCC = 3
0 AGC + 2 GCA + 2 CAG + 3 GCT + 3 CTG + 6 TGC = 16
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 1 CAC + 1 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 1 GCC + 1 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7303908|gb|AE003834.1|AE003834 Drosophila melanogaster genomic scaffold 142000013386047 section 44 of 52, complete sequence
Position Repeat Coverage Repeat
13713 TCC * 10 27/30 TCC TCC TCA TCC TCT TCC TCC TCC TCC TCG
18383 GCT * 8 22/24 GCT GCT GCT TCT GCT GCT GCT TCT
34205 GTT * 7 19/21 GTT GTT GCT GTT GTT GCT GTT
49319 AAT * 8 23/24 AAT AAT AAT AAC AAT AAT AAT AAT
59910 TTA * 7 19/21 TTA TTA TTA TTA TAA CTA TTA
80462 GAG * 8 23/24 GAG GAG GAG GAG GAG GAC GAG GAG
81440 CAC * 16 44/48 CAC TAC CAC CAC CAC AAC CAC CAC CAC AAC CAC CAC CAC CAC CAC TAC
97078 AGC * 13 36/39 AGC GGC GGC AGC AGC AGC AGC AGC AGC AGC AGC AGC AAC
117391 TGG * 7 19/21 TGG TGG ATG TGG TGG TGG TGG
118147 CAC * 7 19/21 CAC CAC TAC CAC CTC CAC CAC
121459 AGC * 7 19/21 AGC AGC GGC AGC AGC AGC AAC
159017 ATA * 7 19/21 ATA ATA ATA ATA ATA ATA TTT
161612 ATA * 7 19/21 ATA ATA ATA ATA ATA ATA TTT
230729 TCA * 8 22/24 TCA TAA TCA TCA TCA TCA TCA TCT
-----------------------------------------------------------------------------------------
Total sequence length......................... 257324
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 2 2 0 0 0 0 0 0 0 0 0 0 0
AGC 2 1 0 1 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
TCC 1 0 1 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAC 2 1 0 0 1 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 2 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 4
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 1 GTT + 0 TTG + 0 TGT = 1
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 1 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 1 TCC = 2
2 AGC + 0 GCA + 0 CAG + 1 GCT + 0 CTG + 0 TGC = 3
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 2 CAC + 0 GGT + 0 GTG + 1 TGG = 3
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7303875|gb|AE003833.1|AE003833 Drosophila melanogaster genomic scaffold 142000013386047 section 43 of 52, complete sequence
Position Repeat Coverage Repeat
273 TTA * 8 22/24 TTA TTA TTA TTA TTA TTA TTC ATA
8734 CAA * 7 19/21 CAA CAA AAA CAA CAG CAA CAA
45761 GTT * 9 25/27 GTT TTT GTT TTT GTT GTT GTT GTT GTT
72982 GTT * 10 28/30 GTT GTT GTT GTT GTT GTG GTT GTT GTT GTG
81740 CTG * 7 19/21 CTG CTC CTG CTC CTG CTG CTG
88005 TCA * 7 19/21 TCA TCA TCA TCA TCA TCG CCA
88900 CAG * 8 22/24 CAG CAT CGG CAG CAG CAG CAG CAG
105314 GCT * 7 19/21 GCT GGT GCT GCT GTT GCT GCT
105960 TGC * 9 25/27 TGC TGC TGC TGT TGC TGC TGC TGC TGG
106236 GCT * 9 26/27 GCT GCT GCT ACT GCT GCT GCT GCT GCT
106404 TGC * 8 22/24 TGC TGC TGC TGC TGT TGC TGT TGC
106449 TGC * 11 31/33 TGC TGC TGC TGC TGG TGT TGC TGC TGC TGC TGC
106553 CTG * 7 19/21 CTG CTG CTG CTG TTG CTG CGG
120111 TGG * 12 33/36 TGG TGG TGG TGG TGG TGA TGG TGG TGG TGG TGC TGC
120318 TGC * 7 19/21 TGC TGC TGC GGC TGC TGC TGT
120362 TGC * 7 19/21 TGC TGC GGC TGT TGC TGC TGC
120400 CTG * 7 19/21 CTG CTG CTG CTG CCG CCG CTG
128519 TGC * 7 20/21 TGC TGT TGC TGC TGC TGC TGC
129245 GCT * 8 23/24 GCT GCT GCT GCT GCT GCT GCT GCC
129365 CTG * 7 19/21 CTG CTG CTG CTG CTG TTG TTG
129492 TGC * 7 19/21 TGC TGC TGC TGG TGT TGC TGC
137296 GTT * 10 27/30 GTT GTT GTT GTC GTT GTG GTT GTT GTT GCT
144028 TAT * 8 22/24 TAT TAT TAT TAC TAT TAT TAT TGT
163543 TTG * 7 19/21 TTG TTG TTG TTG TTG TGA TTG
205740 GCA * 7 19/21 GCA GCA GCA ACA GCA TCA GCA
218459 AGC * 7 19/21 AGC AGC AAC AAC AGC AGC AGC
218515 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CAA
242780 GAG * 8 22/24 GAG GAG AAG GAG GAT GAG GAG GAG
250659 CTC * 7 19/21 CTC CTC CTC CTG CTC CTC CGC
257633 CAA * 8 23/24 CAA CAA CAA CAA TAA CAA CAA CAA
258493 CAG * 10 29/30 CAG CAG CAG CAG CAC CAG CAG CAG CAG CAG
259078 CAA * 7 19/21 CAA CAA CAA CAA CAA CAC CAC
259105 CAA * 15 41/45 CAA CAA CAA CAA CAC CAA CAA CAA CAA CAA CAA CAG CAA CAT CAG
-----------------------------------------------------------------------------------------
Total sequence length......................... 265562
Total number of repeats detected.............. 33
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 7 6 1 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 3 1 2 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 3 3 0 0 0 0 0 0 0 0 0 0 0
CAA 4 3 0 1 0 0 0 0 0 0 0 0 0
CAG 3 2 1 0 0 0 0 0 0 0 0 0 0
CTG 4 4 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 1 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 4 CAA + 3 GTT + 1 TTG + 0 TGT = 8
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 1 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 0 CCT + 1 CTC + 0 TCC = 2
1 AGC + 1 GCA + 3 CAG + 3 GCT + 4 CTG + 7 TGC = 19
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 1 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7303842|gb|AE003832.1|AE003832 Drosophila melanogaster genomic scaffold 142000013386047 section 42 of 52, complete sequence
Position Repeat Coverage Repeat
11490 AGC * 7 19/21 AGC AGC AAC AAC AGC AGC AGC
13630 AAT * 7 19/21 AAT AAT AAT AAT AAT AAT TAA
18812 GAG * 7 19/21 GAG AAG GTG GAG GAG GAG GAG
67814 CAG * 7 19/21 CAG CAG CAG CAG CAA CAA CAG
75557 CAG * 10 28/30 CAG CAG CAG CAG CAG CAG CCG CAG CAG CCG
75709 GCA * 8 23/24 GCA GCT GCA GCA GCA GCA GCA GCA
76691 TCA * 8 23/24 TCA TCA TCA TCA TCA TCA TCA GCA
79655 AGC * 10 28/30 AGC AGT AGC AGC AGC AGC AGC AGC AGC ATC
131305 CTG * 10 29/30 CTG CTG CTG CTG CTG CTG CTG CTG CTC CTG
136786 ATT * 14 39/42 ATT ATT ATT ATT ATT ATT ATT ATT ATC ATT ATT TTC ATT ATT
152254 TAC * 8 23/24 TAC TAC TAC GAC TAC TAC TAC TAC
193846 CAG * 7 19/21 CAG CAG CAG CAA CAG CAG CCG
199292 GCA * 7 20/21 GCA GCA GCA GCA GAA GCA GCA
229091 AGC * 7 19/21 AGC TGC AGC AGC AGT AGC AGC
235174 AAC * 7 19/21 AAC CAC AAC AAC GAC AAC AAC
-----------------------------------------------------------------------------------------
Total sequence length......................... 261713
Total number of repeats detected.............. 15
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 1 0 0 1 0 0 0 0 0 0 0 0 0
AGC 3 2 1 0 0 0 0 0 0 0 0 0 0
TAC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 3 2 1 0 0 0 0 0 0 0 0 0 0
CTG 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 1 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 1 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 1 TAC = 1
0 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 1
3 AGC + 2 GCA + 3 CAG + 0 GCT + 1 CTG + 0 TGC = 9
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7303794|gb|AE003831.1|AE003831 Drosophila melanogaster genomic scaffold 142000013386047 section 41 of 52, complete sequence
Position Repeat Coverage Repeat
490 GTT * 7 19/21 GTT GTT GTT GTT GTT GCT GTA
7048 GGT * 7 19/21 GGT GGT GGT GGT AAT GGT GGT
29934 ATG * 7 19/21 ATG ACG ACG ATG ATG ATG ATG
65736 ACA * 10 27/30 ACA ACA ACA ACT ACC ACA ACA ACA ACA ACC
66018 ACA * 8 22/24 ACA ACA ACA ACA ACC ACA ACA ACG
75250 TCA * 7 19/21 TCA TCA TCA TCA TCA CCA TAA
111407 GTA * 8 22/24 GTA GTT GTA GAA GTA GTA GTA GTA
119232 AAC * 7 20/21 AAC ACC AAC AAC AAC AAC AAC
128814 GCG * 7 19/21 GCG GCG GCG GCA GCA GCG GCG
170554 GAG * 8 22/24 GAG GTG GAG GAG GAG GAG GAG GAA
176889 TGC * 8 22/24 TGC TGC TGC TGC TGC TAC TGC CGC
181884 ATA * 7 19/21 ATA AAA ATA AAA ATA ATA ATA
191987 GCA * 7 19/21 GCA GCA GCA ACA GCA GCA GCC
192197 CAG * 10 27/30 CAG CAG CAG CAA CAG TAG CAG CAG CAG CAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 260916
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 2 1 1 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTA 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 2 ACA + 0 CAA + 1 GTT + 0 TTG + 0 TGT = 4
1 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 1 TCA = 2
0 AGT + 1 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 1
0 AGC + 1 GCA + 1 CAG + 0 GCT + 0 CTG + 1 TGC = 3
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 1 GGT + 0 GTG + 0 TGG = 1
0 GGC + 1 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7303755|gb|AE003830.1|AE003830 Drosophila melanogaster genomic scaffold 142000013386047 section 40 of 52, complete sequence
Position Repeat Coverage Repeat
4318 CAA * 11 31/33 CAA CAA CAA CAA CTA CAA CAA CAA CAA CAA CAG
6964 TCA * 8 23/24 TCA TCA TCA TCG TCA TCA TCA TCA
36863 CAA * 8 22/24 CAA CAA CAA CAA TAA CAA CAA CAG
36947 CAA * 7 19/21 CAA CAA CAA CAG CAA CAA TAA
39658 GCT * 7 19/21 GCT GCT GCT GTT GCT GTT GCT
39681 TGC * 7 19/21 TGC TGC TGC TCC TGC TCC TGC
58229 GAG * 8 22/24 GAG GAG GAG GTG GAG GAG TAG GAG
110440 GCT * 14 38/42 GCT GCT GCT GCT GCT ACT GCC GCT GCT GCT GCT GCT GCT ACC
136744 GCA * 10 27/30 GCA GCA GCA ACA GCA ACA GCA GCA GCA ACA
136775 CAG * 12 33/36 CAG CAG CAG CAG CAG CAG CAA CAG CAA CAG CAG CAA
138420 CAG * 10 27/30 CAG CAG CAG CAA CAG CAG CAG CAG CAG GTG
138743 CAG * 7 20/21 CAG CAG CAG CAG CAG CGG CAG
139404 GCA * 10 28/30 GCA GCA GCA GCA GCA GCA GCC GCC GCA GCA
147119 CAA * 8 23/24 CAA CAA CAA CAA CAA CAC CAA CAA
147171 AGC * 11 30/33 AGC AGC AGC AGC AGC AGC AGC AGC AAC AAC AAC
159696 CTG * 11 30/33 CTG CGG ATG CTG CTG CTG CTG CTG CTG CGG CTG
172908 CCA * 7 19/21 CCA TCA CCA TCA CCA CCA CCA
185881 AGC * 7 19/21 AGC AGC AAC AAC AGC AGC AGC
185937 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CAA
198429 GCT * 8 23/24 GCT GCT GCT GCT GCT GCT GCT GCC
205012 CAT * 9 25/27 CAT CAC CAT CAT CAT CAT CAT CAT CAG
217652 GCA * 8 22/24 GCA GCA GCA GCA GCG GCA GAA GCA
219750 GGC * 7 19/21 GGC GGC GGC GAC GGC GGC GGA
243403 TGT * 8 22/24 TGT AGT AGT TGT TGT TGT TGT TGT
245858 GCT * 8 22/24 GCT GCT ACT GCT GCT GCT GCT GCA
249463 ATA * 7 20/21 ATA ATA ATA ATA ATA ATA ATG
252259 TGG * 8 22/24 TGG TGG TGG TGG TGG TGG TGG CCG
-----------------------------------------------------------------------------------------
Total sequence length......................... 261895
Total number of repeats detected.............. 27
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 1 1 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1