Tri-Nucleotide Repeats in Genomic Sequences Tri-Nucleotide Repeats in
Drosophila melanogaster Chromosome-Arm-2R Genomic Scaffolds


Genomic sequence
gi|7289019|gb|AE002937.1|AE002937 Drosophila melanogaster genomic scaffold 142000013385320, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       3612 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7289079|gb|AE003017.1|AE003017 Drosophila melanogaster genomic scaffold 142000013385367, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       19141 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7289475|gb|AE003048.1|AE003048 Drosophila melanogaster genomic scaffold 142000013385699, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       29176 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7289453|gb|AE003279.1|AE003279 Drosophila melanogaster genomic scaffold 142000013385680, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       7951 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7289112|gb|AE003322.1|AE003322 Drosophila melanogaster genomic scaffold 142000013385396, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    42513  GAA *  7    19/21     GAA GAA GAG GAA GAA GAT GAA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       43718 
 Total number of repeats detected..............       1 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  GAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   1 GAA +   0 CTT +   0 TTC +    0 TCT      =    1 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    0 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    0 GCA +   0 CAG +   0 GCT +   0 CTG +    0 TGC      =    0 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7289300|gb|AE002594.1|AE002594 Drosophila melanogaster genomic scaffold 142000013385553, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       11918 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7289520|gb|AE002621.1|AE002621 Drosophila melanogaster genomic scaffold 142000013385737, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       2655 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7289039|gb|AE002630.1|AE002630 Drosophila melanogaster genomic scaffold 142000013385333, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       12312 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7288934|gb|AE002639.1|AE002639 Drosophila melanogaster genomic scaffold 142000013385246, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     2188  ATA * 18    49/54     ATA ATA ATA ACA ATA ATA ATA ATA ATT ATG ATA ATA ATA TTA ATA ATA ATT ATA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       13170 
 Total number of repeats detected..............       1 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATA      1       0       0       0       1       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    1 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    0 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    0 GCA +   0 CAG +   0 GCT +   0 CTG +    0 TGC      =    0 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7289090|gb|AE002666.1|AE002666 Drosophila melanogaster genomic scaffold 142000013385377, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       24153 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7288943|gb|AE002691.1|AE002691 Drosophila melanogaster genomic scaffold 142000013385255, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       32417 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7288917|gb|AE002726.1|AE002726 Drosophila melanogaster genomic scaffold 142000013385230, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       1893 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7289853|gb|AE002751.1|AE002751 Drosophila melanogaster genomic scaffold 142000013386031, complete sequence
 
 Position  Repeat     Coverage   Repeat 

      847  TAA *  7    19/21     TAA TAA TAA TAA TAA TAA GTA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       107231 
 Total number of repeats detected..............       1 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   1 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    0 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    0 GCA +   0 CAG +   0 GCT +   0 CTG +    0 TGC      =    0 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7289862|gb|AE002760.1|AE002760 Drosophila melanogaster genomic scaffold 142000013386034, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       62674 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7289517|gb|AE002761.1|AE002761 Drosophila melanogaster genomic scaffold 142000013385734, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       4416 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7289299|gb|AE002770.1|AE002770 Drosophila melanogaster genomic scaffold 142000013385552, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       32269 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7289417|gb|AE002806.1|AE002806 Drosophila melanogaster genomic scaffold 142000013385651, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       3603 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7289767|gb|AE002892.1|AE002892 Drosophila melanogaster genomic scaffold 142000013385959, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       16864 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7288929|gb|AE002919.1|AE002919 Drosophila melanogaster genomic scaffold 142000013385241, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       3000 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7289383|gb|AE002935.1|AE002935 Drosophila melanogaster genomic scaffold 142000013385620, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       21261 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7288949|gb|AE002944.1|AE002944 Drosophila melanogaster genomic scaffold 142000013385261, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       1824 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7288953|gb|AE002952.1|AE002952 Drosophila melanogaster genomic scaffold 142000013385263, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       14708 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7289359|gb|AE002960.1|AE002960 Drosophila melanogaster genomic scaffold 142000013385601, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       19947 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7289183|gb|AE002968.1|AE002968 Drosophila melanogaster genomic scaffold 142000013385462, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       3372 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7289437|gb|AE002976.1|AE002976 Drosophila melanogaster genomic scaffold 142000013385668, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    39243  ATA *  7    19/21     ATA ATA ATA ATA ATA ATA TTT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       43487 
 Total number of repeats detected..............       1 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    1 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    0 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    0 GCA +   0 CAG +   0 GCT +   0 CTG +    0 TGC      =    0 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7289322|gb|AE002980.1|AE002980 Drosophila melanogaster genomic scaffold 142000013385568, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       19750 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7289200|gb|AE002984.1|AE002984 Drosophila melanogaster genomic scaffold 142000013385479, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       26448 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7289372|gb|AE002992.1|AE002992 Drosophila melanogaster genomic scaffold 142000013385609, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       13643 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7289348|gb|AE003000.1|AE003000 Drosophila melanogaster genomic scaffold 142000013385592, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       17194 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7289338|gb|AE003008.1|AE003008 Drosophila melanogaster genomic scaffold 142000013385583, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    16614  TAT *  7    19/21     TAT TAT AAT AAT TAT TAT TAT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       26058 
 Total number of repeats detected..............       1 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    1 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    0 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    0 GCA +   0 CAG +   0 GCT +   0 CTG +    0 TGC      =    0 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7289553|gb|AE003016.1|AE003016 Drosophila melanogaster genomic scaffold 142000013385767, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       1073 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7288979|gb|AE003024.1|AE003024 Drosophila melanogaster genomic scaffold 142000013385289, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    21958  TAA * 10    27/30     TAA TAA TAA TAT TAA TAA TAA AAA TAA AAA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       59055 
 Total number of repeats detected..............       1 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  TAA      1       0       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   1 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    0 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    0 GCA +   0 CAG +   0 GCT +   0 CTG +    0 TGC      =    0 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7289342|gb|AE003032.1|AE003032 Drosophila melanogaster genomic scaffold 142000013385587, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       29994 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7289208|gb|AE003035.1|AE003035 Drosophila melanogaster genomic scaffold 142000013385487, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       1546 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7289130|gb|AE003040.1|AE003040 Drosophila melanogaster genomic scaffold 142000013385414, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    14515  TAT *  7    19/21     TAT CAT TAT TAA TAT TAT TAT
    37743  ATT *  8    23/24     ATT ATT ATT ATT ATT ATT ATT ATA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       55603 
 Total number of repeats detected..............       2 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   1 ATT +   0 TTA +    1 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    0 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    0 GCA +   0 CAG +   0 GCT +   0 CTG +    0 TGC      =    0 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7289411|gb|AE002589.1|AE002589 Drosophila melanogaster genomic scaffold 142000013385645, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       1058 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7289416|gb|AE002607.1|AE002607 Drosophila melanogaster genomic scaffold 142000013385650, complete sequence
 
 Position  Repeat     Coverage   Repeat 

      257  AAT * 12    33/36     AAT AAT AAT AAT AAC AAT CAT AAT AAT AAT ACT AAT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       1239 
 Total number of repeats detected..............       1 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       0       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    0 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    0 GCA +   0 CAG +   0 GCT +   0 CTG +    0 TGC      =    0 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7289156|gb|AE002648.1|AE002648 Drosophila melanogaster genomic scaffold 142000013385436, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       4403 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7289408|gb|AE002686.1|AE002686 Drosophila melanogaster genomic scaffold 142000013385643, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       1527 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7289468|gb|AE003001.1|AE003001 Drosophila melanogaster genomic scaffold 142000013385692, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       1019 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7289446|gb|AE003056.1|AE003056 Drosophila melanogaster genomic scaffold 142000013385676, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       22669 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7289145|gb|AE003064.1|AE003064 Drosophila melanogaster genomic scaffold 142000013385425, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    16026  ATA *  7    19/21     ATA AAA ATA ATA ATA ATA AAA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       22016 
 Total number of repeats detected..............       1 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    1 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    0 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    0 GCA +   0 CAG +   0 GCT +   0 CTG +    0 TGC      =    0 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7289388|gb|AE003195.1|AE003195 Drosophila melanogaster genomic scaffold 142000013385624, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       1511 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7289263|gb|AE002709.1|AE002709 Drosophila melanogaster genomic scaffold 142000013385535, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    13218  TTA *  7    20/21     TTA TTA TTA TTA TTA TAA TTA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       40796 
 Total number of repeats detected..............       1 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   1 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    0 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    0 GCA +   0 CAG +   0 GCT +   0 CTG +    0 TGC      =    0 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7289785|gb|AE003073.1|AE003073 Drosophila melanogaster genomic scaffold 142000013385973, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       3738 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7289275|gb|AE002640.1|AE002640 Drosophila melanogaster genomic scaffold 142000013385546, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       2000 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7289053|gb|AE002788.1|AE002788 Drosophila melanogaster genomic scaffold 142000013385347, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       19182 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7289057|gb|AE003081.1|AE003081 Drosophila melanogaster genomic scaffold 142000013385349, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       12708 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7289223|gb|AE003090.1|AE003090 Drosophila melanogaster genomic scaffold 142000013385502, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       38153 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7316105|gb|AE002769.1|AE002769 Drosophila melanogaster genomic scaffold 142000013386052, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       0 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7302256|gb|AE003788.1|AE003788 Drosophila melanogaster genomic scaffold 142000013386052 section 5 of 5, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       128817 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7302239|gb|AE003787.1|AE003787 Drosophila melanogaster genomic scaffold 142000013386052 section 4 of 5, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    19473  ATT * 10    27/30     ATT ATT TTT ATT ATT ATT ATT ATT ATA ATG
    50752  ATA * 12    33/36     ATA ATT ATA ATA ATA ATA ATT ATA ATA ATA ATA CTA
   182283  TAT *  7    19/21     TAT TAT TAT TAT TAT TAT CAG
   205052  TAA *  7    19/21     TAA TAA TAA TAA TTA TAA TAT
   209245  ATT *  7    20/21     ATT TTT ATT ATT ATT ATT ATT
   217948  TTA *  7    19/21     TTA TTA TTA TTA TTA ATA ATA
   254817  AGT *  7    19/21     AGT AGT AGT AGT ATG AGT AGT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       307228 
 Total number of repeats detected..............       7 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  ATT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  AGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    1 ATA +   1 TAA +   2 ATT +   1 TTA +    1 TAT      =    6 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    0 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   1 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    1 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    0 GCA +   0 CAG +   0 GCT +   0 CTG +    0 TGC      =    0 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7302231|gb|AE003786.1|AE003786 Drosophila melanogaster genomic scaffold 142000013386052 section 3 of 5, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    18174  GAA *  7    19/21     GAA GAA GAG GAA GAA GAT GAA
    45114  CCG *  7    19/21     CCG CCG CCG CCG CAG CCT CCG
   100085  ATA *  8    22/24     ATA ATA ATA ATA ATA ATA ATA AAT
   272138  CTT *  7    19/21     CTT CAT CTT CTT CCT CTT CTT
   282105  TAT *  7    19/21     TAT TAT TAT TAT TAT TAT ATT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       316735 
 Total number of repeats detected..............       5 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    1 ATA +   0 TAA +   0 ATT +   0 TTA +    1 TAT      =    2 
   0 AAG +    0 AGA +   1 GAA +   1 CTT +   0 TTC +    0 TCT      =    2 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    0 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    0 GCA +   0 CAG +   0 GCT +   0 CTG +    0 TGC      =    0 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   1 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7302205|gb|AE003785.1|AE003785 Drosophila melanogaster genomic scaffold 142000013386052 section 2 of 5, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    54955  CTG *  7    19/21     CTG CCG CTG TTG CTG CTG CTG
    97790  TGC *  7    19/21     TGC TCT TGC TGC TGC TGC TGC
   163682  TTA * 12    33/36     TTA CTA TTA TTA TTA TTA CTA TTA TTA CTA TTA TTA
   183790  TAG *  7    19/21     TAG TAG TAG TAG TAG TTC TAG
   266128  ATT *  7    19/21     ATT ATT ATT ATT ATT ATT GTA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       296279 
 Total number of repeats detected..............       5 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   1 ATT +   1 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    0 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   1 TAG +   0 ACT +   0 CTA +    0 TAC      =    1 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    0 GCA +   0 CAG +   0 GCT +   1 CTG +    1 TGC      =    2 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7302167|gb|AE003784.1|AE003784 Drosophila melanogaster genomic scaffold 142000013386052 section 1 of 5, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    18385  ATG *  8    23/24     ATG ATG ATG ATG GTG ATG ATG ATG
    91293  ATA *  7    19/21     ATA TGA ATA ATA ATA ATA ATA
   122289  GCA * 10    28/30     GCA GCA GCA GCA GCA GCA GCA ACA GCA ACA
   148005  CTG * 11    30/33     CTG CTG CTG CTG CTG CTG GTG CTG CTG CTG AGG
   148770  ATG *  8    24/24     ATG ATG ATG ATG ATG ATG ATG ATG
   170258  AAT * 15    41/45     AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT ATT CTA
   188987  CTC *  7    19/21     CTC CTC CTC CTA CTC CAC CTC
   205780  TGA *  8    22/24     TGA TGA TGA TGA CGA TGA TGA TGC
   256586  TGC *  7    20/21     TGC TGC TGC TGC TGC TGT TGC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       313072 
 Total number of repeats detected..............       9 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       0       0       1       0       0       0       0       0       0       0       0       0   
  ATA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CTG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    1 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    0 
   2 ATG +    1 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    3 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   1 CTC +    0 TCC      =    1 
   0 AGC +    1 GCA +   0 CAG +   0 GCT +   1 CTG +    1 TGC      =    3 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7289017|gb|AE003098.1|AE003098 Drosophila melanogaster genomic scaffold 142000013385318, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       24781 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7316098|gb|AE002778.1|AE002778 Drosophila melanogaster genomic scaffold 142000013386042, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       0 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7302304|gb|AE003790.1|AE003790 Drosophila melanogaster genomic scaffold 142000013386042 section 2 of 2, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    43875  CAC *  7    19/21     CAC CAC CAG CAC CAG CAC CAC
    43931  GCA * 12    34/36     GCA GCA GCA GCA GCA GCA ACA GCA ACA GCA GCA GCA
    44300  GAC *  8    22/24     GAC GAC GAC GAC GAC AAC GGC GAC
    45406  CAG *  7    19/21     CAG CAC CAG CAG CAG CAC CAG
    55826  ATA * 11    30/33     ATA CTA ATA ATA ATA ATA ATA ATA ATA ATA CTC
    79578  TGA *  8    22/24     TGA TGG CGA TGA TGA TGA TGA TGA
    88388  AAT *  7    20/21     AAT AAT AAT AAT AAT AAT AAA
   136920  TGC *  7    19/21     TGC TGC TGG TGG TGC TGC TGC
   136947  TGC *  7    19/21     TGC TGT TGC TGA TGC TGC TGC
   137820  TGC *  8    22/24     TGC TGC TGC TGT TGG TGC TGC TGC
   139057  CTG *  7    19/21     CTG TTG CTG CTG TTG CTG CTG
   139080  GCT *  8    22/24     GCT GCT GCT GCT GTT GCT GCT GCA
   140761  TGC * 11    30/33     TGC TGC TGT TGC TGC TGC TGC TGC TGC AAC TGC
   141735  GCT *  7    19/21     GCT GCT GCT GAT GCT GCT GGT
   141953  TGT *  7    20/21     TGT TGT TGT TGT TGT TGT GGT
   143092  TGC *  7    20/21     TGC TGC TGC TGC TGC TGC TGT
   173164  TGT *  8    22/24     TGT TGT TGG TGT TGT TGA TGT TGT
   188283  CAT *  8    22/24     CAT CGT CAT CAT CAT CAA CAT CAT
   188356  GCA *  7    19/21     GCA ACA GCA GCA GCA GAA GCA
   200399  TGT *  7    19/21     TGT TGT TGT TGT TAC TGT TGT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       210451 
 Total number of repeats detected..............       20 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      3       3       0       0       0       0       0       0       0       0       0       0       0   
  TGC      5       4       1       0       0       0       0       0       0       0       0       0       0   
  GAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    1 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    3 TGT      =    3 
   0 ATG +    1 TGA +   0 GAT +   1 CAT +   0 ATC +    0 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    2 GCA +   1 CAG +   2 GCT +   1 CTG +    5 TGC      =   11 
   0 ACG +    0 CGA +   1 GAC +   0 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   1 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7302263|gb|AE003789.1|AE003789 Drosophila melanogaster genomic scaffold 142000013386042 section 1 of 2, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    34136  ATG * 11    31/33     ATG ATG ATG ATG CTG ATG ATG ATG ATG GTG ATG
    53748  AGG *  8    22/24     AGG AGC AGG AGC AGG AGG AGG AGG
    58575  CAT * 10    27/30     CAT CGT CAT CAT CCT CAT CAT CAT CAT CGT
    62626  TCA *  7    19/21     TCA TCA CCA TCA TCA CCA TCA
   119349  AAT *  7    20/21     AAT AAA AAT AAT AAT AAT AAT
   122057  CTT *  7    20/21     CTT CGT CTT CTT CTT CTT CTT
   123880  CAG *  7    19/21     CAG CAA CAA CAG CAG CAG CAG
   175224  GCA *  7    19/21     GCA GCA GCA GCA GGC GCA GCA
   239257  TCG *  7    19/21     TCG TCC TCG TCG TCC TCG TCG
   239358  ATC *  8    22/24     ATC ATC ATC CTC ATC ATC GTC ATC
   285361  GCA *  7    19/21     GCA ACA TCA GCA GCA GCA GCA
   286008  TGC *  8    22/24     TGC TGC TGC TTC TGC TGT TGC TGC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       298904 
 Total number of repeats detected..............       12 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  ATC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   1 CTT +   0 TTC +    0 TCT      =    1 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    0 
   1 ATG +    0 TGA +   0 GAT +   1 CAT +   1 ATC +    1 TCA      =    4 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   1 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   0 AGC +    2 GCA +   1 CAG +   0 GCT +   0 CTG +    1 TGC      =    4 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    1 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7316102|gb|AE002787.1|AE002787 Drosophila melanogaster genomic scaffold 142000013386047, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       0 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7304243|gb|AE003842.1|AE003842 Drosophila melanogaster genomic scaffold 142000013386047 section 52 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    22022  CTG *  8    22/24     CTG CTG CTA CTG CTG CTG CTT CTG
    26100  GAT *  7    19/21     GAT GAT GAA AAT GAT GAT GAT
    33032  CTG *  7    19/21     CTG GTG CTG CTG CTG CTG TTG
    45482  TTG *  8    22/24     TTG TTG TTG TTA TTG TTG TTG TCG
    60906  CAG *  7    19/21     CAG CAG CAG GAG CAG CGG CAG
    73542  TTC *  7    19/21     TTC TTC TTC ATC TCC TTC TTC
    79174  TGC *  7    20/21     TGC TGC CGC TGC TGC TGC TGC
    87441  CAG *  8    22/24     CAG CAG CAG CAG AAG CAG CAT CAG
   110448  CAA *  7    19/21     CAA CAA CAA CAG CAA CGA CAA
   174966  CAT *  7    20/21     CAT CAT CAT CAT CAA CAT CAT
   183500  TAT *  8    23/24     TAT TAT TAT TAT TAT TAT TAT TTT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       252413 
 Total number of repeats detected..............       11 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    1 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   1 TTC +    0 TCT      =    1 
   0 AAC +    0 ACA +   1 CAA +   0 GTT +   1 TTG +    0 TGT      =    2 
   0 ATG +    0 TGA +   1 GAT +   1 CAT +   0 ATC +    0 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    0 GCA +   2 CAG +   0 GCT +   2 CTG +    1 TGC      =    5 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7304203|gb|AE003841.1|AE003841 Drosophila melanogaster genomic scaffold 142000013386047 section 51 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     4351  GGA *  7    19/21     GGA GGA GGA GGA GGA AGA AGA
    21293  GGA *  7    19/21     GGA GGC CGA GGA GGA GGA GGA
    24165  CTT *  7    19/21     CTT CTT CTT CTT CTG CTT CTC
    25233  GGA *  7    19/21     GGA GGA GGA CGA GGA GGA TGA
    27916  GAT *  7    19/21     GAT GAT GAT GAT GTT GAT GAG
    28734  CCT *  7    19/21     CCT CCT CCT TCT CCT CCC CCT
    34598  AGG *  7    19/21     AGG AGG AGG AGG AGG AGG GAG
    43351  AAC *  8    22/24     AAC AAC AAA AAC AAC AAC AAC GAC
    45745  CAT * 15    43/45     CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAC CAT CAT CAG CAT
    82728  CGC *  7    19/21     CGC CTC CTC CGC CGC CGC CGC
    82838  TGC *  7    19/21     TGC TGC AGC TGC TGC TGA TGC
    82895  TGC * 11    31/33     TGC TGC TGC TGT TGC TGC TGC TGC TGG TGC TGC
    84417  AGG *  7    19/21     AGG AGG AGT AGG AGG AGG AGC
    84589  GGA * 12    33/36     GGA GGA GGA GGA GGA GGA TGA GGA GGA GAA GGA GGC
    92142  CCG *  7    19/21     CCG CCG CCG CCG CCG CCG TTG
    92254  TGT *  7    20/21     TGT TAT TGT TGT TGT TGT TGT
   101336  CTC *  7    19/21     CTC CTC CTC CTC CTC TTC ATC
   109835  ACC *  7    19/21     ACC ACC ACC ATC ACC ACC CCC
   110241  AGC *  7    19/21     AGC AAC AGC AGC AGC AGC AAC
   111550  GTC *  7    19/21     GTC GTC GTC ATC GTC ATC GTC
   113406  GTT *  7    19/21     GTT GTA GTT GTG GTT GTT GTT
   113473  GTG *  8    22/24     GTG TTG GTG GTG GTG GAG GTG GTG
   118046  CAG *  9    26/27     CAG CAG CAG CAG CAG CAG CAG CAT CAG
   145983  CAT *  7    19/21     CAT CAT CAT CTT CAT CAT CGT
   189917  GTT *  7    20/21     GTT GTT GTT GTT ATT GTT GTT
   202863  CAT *  8    22/24     CAT CAT CGT CAT CAT CAT CAC CAT
   207058  ATA * 10    29/30     ATA ATA ATA ATA ATT ATA ATA ATA ATA ATA
   218726  ACC *  8    22/24     ACC ACT ACC ACC ACC ACC ACC ACT
   230823  CCT *  8    22/24     CCT ACT CCT CCT CCT CCT CCG CCT
   241490  ATG *  7    19/21     ATG ATG ATG ATG ATG AAG AAG
   244194  ATT * 16    44/48     ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATA ATT ACT GTG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       262082 
 Total number of repeats detected..............       31 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  ATT      1       0       0       0       1       0       0       0       0       0       0       0       0   
  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGA      4       3       1       0       0       0       0       0       0       0       0       0       0   
  CAT      3       2       0       1       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    1 ATA +   0 TAA +   1 ATT +   0 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   1 CTT +   0 TTC +    0 TCT      =    1 
   1 AAC +    0 ACA +   0 CAA +   2 GTT +   0 TTG +    1 TGT      =    4 
   1 ATG +    0 TGA +   1 GAT +   3 CAT +   0 ATC +    0 TCA      =    5 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   2 AGG +    4 GGA +   0 GAG +   2 CCT +   1 CTC +    0 TCC      =    9 
   1 AGC +    0 GCA +   1 CAG +   0 GCT +   0 CTG +    2 TGC      =    4 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   1 GTC +    0 TCG      =    1 
   2 ACC +    0 CCA +   0 CAC +   0 GGT +   1 GTG +    0 TGG      =    3 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   1 CCG +    1 CGC      =    2 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7304160|gb|AE003840.1|AE003840 Drosophila melanogaster genomic scaffold 142000013386047 section 50 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     2192  CAA * 10    27/30     CAA CAA CAA CAA CTA CAA CAA CAA CAA AAC
    12221  GTT *  8    23/24     GTT GTT GTT GTT GTT GTT GTT GCT
    20713  TGC *  8    23/24     TGC TGC TGC TGC TGC TGC TGC TGT
    26700  GTT *  9    25/27     GTT AAT GTT GTT GTT GTT GTT GTT GTT
    26790  GTT *  7    19/21     GTT GTT GTT TTT GTT GCT GTT
    28859  GGT * 11    31/33     GGT GGT GGT GGT AGT GGT GGT GGT GGT GGT GCT
    40873  AGC *  8    22/24     AGC AGG AGA AGC AGC AGC AGC AGC
    40914  CAG * 11    30/33     CAG CAG CAA CAG CAG CAG CAG CAG CAT CAG CAA
    40950  CAG * 11    30/33     CAG CAG CAG CAG CAG CAG CAG CGT CAG CAT CAG
    40997  GCA *  8    23/24     GCA GCA GCA ACA GCA GCA GCA GCA
    41694  GCA *  7    19/21     GCA GCA GCA GCA GCA GCA ACG
    73860  ATA * 10    27/30     ATA ATA ATA ATA TTA ATA ATA ATA ATA TTG
    83286  CAG *  7    19/21     CAG CAG CAG TAG CAG CAG CAA
    87134  TGT *  8    22/24     TGT TGT TGT TGT TCT TGT TGC TGT
    92440  CCT * 12    33/36     CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CAG TCT
   142925  TTA *  7    19/21     TTA TTA TTA TTA TTA CTA TTG
   148175  TGC *  7    19/21     TGC TGC TGC TGC TGT TGG TGC
   167360  TCA *  9    25/27     TCA TCA TCA TCA TCA TCA TCA TCG TCG
   191786  GGA * 14    38/42     GGA GGA GGA GGA GGC GGA AGA GGA GGA CGA GGA GGA GGA GGC
   191970  CCT *  7    20/21     CCT CCT CCT CTT CCT CCT CCT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       259764 
 Total number of repeats detected..............       20 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      3       3       0       0       0       0       0       0       0       0       0       0       0   
  GGA      1       0       0       1       0       0       0       0       0       0       0       0       0   
  GGT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CAG      3       1       2       0       0       0       0       0       0       0       0       0       0   
  CCT      2       1       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    1 ATA +   0 TAA +   0 ATT +   1 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   1 CAA +   3 GTT +   0 TTG +    1 TGT      =    5 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    1 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    1 GGA +   0 GAG +   2 CCT +   0 CTC +    0 TCC      =    3 
   1 AGC +    2 GCA +   3 CAG +   0 GCT +   0 CTG +    2 TGC      =    8 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   1 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7304109|gb|AE003839.1|AE003839 Drosophila melanogaster genomic scaffold 142000013386047 section 49 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     4241  CAC *  7    19/21     CAC CAC CAT CAC CAC CAC CGC
    29126  CGA *  7    19/21     CGA CGA CGA CGA CGA CGT CGT
    43001  AGC *  7    20/21     AGC AGC AGC AGC AGC AGC AGG
    48319  CAG * 15    41/45     CAG CAG CAG CAA CAG CAG CAG CAA CAG CAG CAG CAG CAG CAA CAC
    48367  CAG *  8    22/24     CAG CAG CAG CAT CAG CAG CAA CAG
    56855  ACA *  7    19/21     ACA ACA ACA ACA ACA ACA ATT
    96743  GGT *  7    20/21     GGT GGT GGT GGT GGT GGT GGC
   107797  CTG *  8    22/24     CTG CTG CTG CTG CTG CTA CTA CTG
   137987  CTG * 10    27/30     CTG CTC CTG TTG CTG CTG CTG CTG CTG CTC
   138590  TGC *  8    22/24     TGC TGC TGC TGC CGC TGC TGC AGC
   138659  TGC *  7    19/21     TGC TGA TAC TGC TGC TGC TGC
   142017  GCT *  8    22/24     GCT GCT GCT GCT GCT TCT GCT GGT
   142084  CTG *  7    19/21     CTG CAG TTG CTG CTG CTG CTG
   142118  TGC *  7    19/21     TGC TGC TGT TGT TGC TGC TGC
   143113  TGC *  8    22/24     TGC TGC TGC TCC GGC TGC TGC TGC
   150078  AGC * 11    30/33     AGC AGC AGC AAC AGC AAC AGC AGC AGC AGC ATC
   200129  CAG *  7    19/21     CAG CAG CAG CAA CAG CAG CAA
   227038  ATA *  7    19/21     ATA ATA ATA ATA ATA ATA TTT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       261850 
 Total number of repeats detected..............       18 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      2       1       1       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      4       4       0       0       0       0       0       0       0       0       0       0       0   
  GGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      3       2       0       1       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      3       2       1       0       0       0       0       0       0       0       0       0       0   
  CGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    1 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    1 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    1 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   2 AGC +    0 GCA +   3 CAG +   1 GCT +   3 CTG +    4 TGC      =   13 
   0 ACG +    1 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   1 CAC +   1 GGT +   0 GTG +    0 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7304068|gb|AE003838.1|AE003838 Drosophila melanogaster genomic scaffold 142000013386047 section 48 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     7764  TCA *  8    22/24     TCA TCA TCG TCA TCA TCA TCA TCG
     7788  TCG *  7    19/21     TCG TAG TCG TCG TCG TCG TCA
     8092  TGC *  7    20/21     TGC TGC TGC TTC TGC TGC TGC
    11266  TGG *  7    19/21     TGG TGG TGG TGG TGG CGG TGA
    19258  CGT *  7    19/21     CGT CGT CGT TGT CGT CAT CGT
    20331  GAC *  7    19/21     GAC GAC GGC AAC GAC GAC GAC
    23815  GCA *  7    19/21     GCA GCA GCA GAA GCA GCA ACA
    46199  TGG *  7    19/21     TGG TAG TGG TGG TGC TGG TGG
    53263  CTC * 10    27/30     CTC CTC TTC CTC CTC CTG CTC CTC CTC CGC
    62178  CTC *  7    19/21     CTC CTC CTC CTC CTC ATC GTC
    63522  AAT *  7    20/21     AAT AAC AAT AAT AAT AAT AAT
    68791  CTT *  7    19/21     CTT CTT TTT CTT CTC CTT CTT
   127039  GCA *  7    19/21     GCA GCA GCA ACA GCA GCA ACA
   127064  CAG *  8    22/24     CAG CAG CAG CAG CAG CAG CAG TCG
   224353  AAC *  7    19/21     AAC AAC AAC AAC AAG AAC CAC
   229629  TTG *  7    19/21     TTG ATG TTG TTG TTG TTG TGG
   229900  GTT *  7    19/21     GTT GTT GTT GTT ATT GTT GTG
   233466  CCA *  8    22/24     CCA CCA CCA CTA CCA GCA CCA CCA
   237893  GCC *  7    19/21     GCC GCC GCC TCC CCC GCC GCC
   242353  TTA * 13    36/39     TTA TTA TTA TTA TTG TTG TTA TTA TTA TTA TTA TTA TTT
   244974  TGC *  8    22/24     TGC TGC TGC TGC TGC TGC TAC TCC
   247194  GTT * 11    30/33     GTT GTT GTT GTT ATT GTT GTT GTT GGT GGT GTT
   247239  GCA *  7    20/21     GCA GCA GAA GCA GCA GCA GCA
   248727  GAT *  7    19/21     GAT TAT GGT GAT GAT GAT GAT
   250837  GGC * 10    28/30     GGC GGC GGC GGC GGC AGC AGC GGC GGC GGC
   251445  CGG *  7    19/21     CGG CGG CGG CAG CAG CGG CGG
   251519  CAG *  7    20/21     CAG CAG CAG CAG CAG CAA CAG
   251774  CAA *  9    25/27     CAA CAA CAA CAA CAA TAA TAA CAA CAA
   252030  CAC *  9    25/27     CAC CAT CAC CAC CAC CAT CAC CAC CAC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       263411 
 Total number of repeats detected..............       29 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       0       0       1       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GGC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GCA      3       3       0       0       0       0       0       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTC      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   1 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   1 CTT +   0 TTC +    0 TCT      =    1 
   1 AAC +    0 ACA +   1 CAA +   2 GTT +   1 TTG +    0 TGT      =    5 
   0 ATG +    0 TGA +   1 GAT +   0 CAT +   0 ATC +    1 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   2 CTC +    0 TCC      =    2 
   0 AGC +    3 GCA +   2 CAG +   0 GCT +   0 CTG +    2 TGC      =    7 
   0 ACG +    0 CGA +   1 GAC +   1 CGT +   0 GTC +    1 TCG      =    3 
   0 ACC +    1 CCA +   1 CAC +   0 GGT +   0 GTG +    2 TGG      =    4 
   1 GGC +    0 GCG +   1 CGG +   1 GCC +   0 CCG +    0 CGC      =    3 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7304040|gb|AE003837.1|AE003837 Drosophila melanogaster genomic scaffold 142000013386047 section 47 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    21285  CAG *  7    19/21     CAG CAC CAG CAG CAA CAG CAG
   152794  CTG * 11    31/33     CTG CTG CTG CTG TTG CTG CTG CTG CTG CTG ATG
   152991  GCT *  8    22/24     GCT GCT GCT GCT GCT GTT GTT GCT
   153737  ACT *  7    19/21     ACT ACT ACT ACA ACT ACT ACA
   154269  TGC *  7    19/21     TGC GGA TGC TGC TGC TGC TGC
   155439  GTG *  8    22/24     GTG GTG GGG ATG GTG GTG GTG GTG
   158500  ACC *  7    19/21     ACC AGC CCC ACC ACC ACC ACC
   195457  TGT *  7    19/21     TGT TGT TAT TGT TGT TGT TGG
   195601  TGC * 10    27/30     TGC TGC TGC TGT TGC CGC TGC TGC TGC CGC
   198585  AGC * 10    27/30     AGC AGC AGC AGC AGC AGC AGC GGC AAC AAC
   198873  TGC * 13    36/39     TGC TGC TGC TGC TGC TGC TGC TGC AAC TGC TGC TGC GGC
   200307  TAA *  7    19/21     TAA AAA AAA TAA TAA TAA TAA
   208609  GCT *  8    22/24     GCT ACT TCT GCT GCT GCT GCT GCT
   211818  AAT *  8    22/24     AAT GAT AAT AAT AAT AAT AAC AAT
   215889  AGC *  7    19/21     AGC AGC AGC AAC AAC AGC AGC
   223332  ATC *  8    22/24     ATC CGC ATC ATC ATC ATC ATC ATC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       234905 
 Total number of repeats detected..............       16 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      2       1       1       0       0       0       0       0       0       0       0       0       0   
  ACT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      3       1       1       1       0       0       0       0       0       0       0       0       0   
  GTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       0       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   1 TAA +   0 ATT +   0 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    1 TGT      =    1 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   1 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   1 ACT +   0 CTA +    0 TAC      =    1 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   2 AGC +    0 GCA +   1 CAG +   2 GCT +   1 CTG +    3 TGC      =    9 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   1 ACC +    0 CCA +   0 CAC +   0 GGT +   1 GTG +    0 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7304001|gb|AE003836.1|AE003836 Drosophila melanogaster genomic scaffold 142000013386047 section 46 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     7732  TTG *  7    19/21     TTG TTC TTG TTC TTG TTG TTG
     7771  TGT *  7    19/21     TGT TGT TGC TGT TGT TGT TGC
    33721  GGA *  7    19/21     GGA GGA GGA AGA GGA GCA GGA
    36884  TTA *  7    19/21     TTA TAA TTA TTA TTA TTA TTG
    49400  ATA *  7    19/21     ATA ATC ATA ACA ATA ATA ATA
    49714  TTA *  7    19/21     TTA TTA TTA TTA TTT TTA TTG
   154873  ATG *  8    24/24     ATG ATG ATG ATG ATG ATG ATG ATG
   155169  TTA * 11    30/33     TTA TTA TTG TTA TTG TTA TTA TTA TTA TTA TTG
   173574  CTC *  7    19/21     CTC GTC CTC CTC CTC ATC CTC
   173633  CCT *  7    19/21     CCT CCT CAT CCT CCT CCT CGT
   174163  TGC * 11    30/33     TGC TGC TGC TGC TGC TGT TGC TGC TGC TGA TGT
   174607  TGT *  7    19/21     TGT TGC TGC TGT TGT TGT TGT
   176932  GCT *  8    22/24     GCT GCT GCT GCT GCT GCT GCT GGA
   177051  GCA *  8    22/24     GCA GCA GCA GCT GCA GCA GCA GCC
   177192  TGC *  7    19/21     TGC TGT TGC TGC TGC TGC TGT
   179279  GTG *  7    20/21     GTG GTG GTT GTG GTG GTG GTG
   180580  TAT *  7    20/21     TAT TAT TAT TAT TAT TAT TTT
   206054  GCA * 11    30/33     GCA GCA ACA ACA GCA GCA GCA GCA GCA GCA ACA
   211152  ATG *  7    19/21     ATG ATG ATA ATG ATG ATG ACG
   246281  TCC *  7    19/21     TCC TCC AGC TCC TCC TCC TCC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       253189 
 Total number of repeats detected..............       20 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTA      3       2       1       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       1       1       0       0       0       0       0       0       0       0       0       0   
  TCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    1 ATA +   0 TAA +   0 ATT +   3 TTA +    1 TAT      =    5 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   1 TTG +    2 TGT      =    3 
   2 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    1 GGA +   0 GAG +   1 CCT +   1 CTC +    1 TCC      =    4 
   0 AGC +    2 GCA +   0 CAG +   1 GCT +   0 CTG +    2 TGC      =    5 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   1 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7303956|gb|AE003835.1|AE003835 Drosophila melanogaster genomic scaffold 142000013386047 section 45 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     5129  CAG * 15    41/45     CAG CAG CAG CAG CAG CCG CCG CAG CAG CAG CAG CAG CAA CAG CAT
    14151  CTG *  7    19/21     CTG CTG CTG CTT CTG GTG CTG
    25639  TGC *  8    22/24     TGC TGT TGT TGC TGC TGC TGC TGC
    28566  CTG * 11    30/33     CTG CTG CTG CTG CTA CTG CTG CTG CTG CCG GTG
    28955  GGT *  7    19/21     GGT GGT GGT GTT GGC GGT GGT
    30097  TGC * 12    33/36     TGC TGC TGC TGC AGA TGC TGC TGC TGC TGC AGC TGC
    38870  GCA *  8    23/24     GCA GAA GCA GCA GCA GCA GCA GCA
    47250  TCC *  7    19/21     TCC TCC TCC TCC TCC TCC AGC
    51745  CAC *  8    22/24     CAC CAG CAC CAC CAC CAC CAC CAA
    59758  ACA * 10    27/30     ACA ACA ACA ACA ACA ACA ACC ACA ACA CCT
    60526  CAG *  7    19/21     CAG CAG CAG CAG CAG CAC CAC
    66509  GCC *  8    22/24     GCC GCC GCC ACC GCC GCC GCC CCC
    70436  GCA *  7    19/21     GCA GCA ATA GCA GCA GCA GCA
    98146  CTC *  7    19/21     CTC CTC CTC CTC CGC CTG CTC
   100693  TGC *  8    22/24     TGC TGC TGA TGC TGC TAC TGC TGC
   108513  TAA *  7    19/21     TAA TAA TAT TAA TAT TAA TAA
   131723  GCT *  8    22/24     GCT GCT GCT GAT GTT GCT GCT GCT
   132012  CTG *  7    19/21     CTG CTG TTG CTG CTG CTG GTG
   158279  TGC *  8    22/24     TGC TGA TGC TGC TGC TGC TGC TGG
   168931  TCC *  7    19/21     TCC ACC TCC TCG TCC TCC TCC
   203579  GCT *  7    19/21     GCT GGT GCT ACT GCT GCT GCT
   203865  TGC * 17    47/51     TGC TGA AGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGT TGC TGC TGT
   215618  GCT *  7    20/21     GCT GTT GCT GCT GCT GCT GCT
   221088  AAT * 10    27/30     AAT AAT AGT CAT AAT AAT AAT AAT AAT AAA
   253596  CCG *  8    22/24     CCG CCG CCG CCG CCG CCG CCG CAT
   257085  TGC * 15    41/45     TGC TGC TGC TGC TGT TGC TGC TGC TGT TGC TGC TGA TGC TGC TGG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       259860 
 Total number of repeats detected..............       26 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  ACA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      6       3       1       1       1       0       0       0       0       0       0       0       0   
  TCC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCT      3       3       0       0       0       0       0       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      2       1       0       1       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      3       2       1       0       0       0       0       0       0       0       0       0       0   
  CTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   1 TAA +   0 ATT +   0 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    1 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    1 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   1 CTC +    2 TCC      =    3 
   0 AGC +    2 GCA +   2 CAG +   3 GCT +   3 CTG +    6 TGC      =   16 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   1 CAC +   1 GGT +   0 GTG +    0 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   1 GCC +   1 CCG +    0 CGC      =    2 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7303908|gb|AE003834.1|AE003834 Drosophila melanogaster genomic scaffold 142000013386047 section 44 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    13713  TCC * 10    27/30     TCC TCC TCA TCC TCT TCC TCC TCC TCC TCG
    18383  GCT *  8    22/24     GCT GCT GCT TCT GCT GCT GCT TCT
    34205  GTT *  7    19/21     GTT GTT GCT GTT GTT GCT GTT
    49319  AAT *  8    23/24     AAT AAT AAT AAC AAT AAT AAT AAT
    59910  TTA *  7    19/21     TTA TTA TTA TTA TAA CTA TTA
    80462  GAG *  8    23/24     GAG GAG GAG GAG GAG GAC GAG GAG
    81440  CAC * 16    44/48     CAC TAC CAC CAC CAC AAC CAC CAC CAC AAC CAC CAC CAC CAC CAC TAC
    97078  AGC * 13    36/39     AGC GGC GGC AGC AGC AGC AGC AGC AGC AGC AGC AGC AAC
   117391  TGG *  7    19/21     TGG TGG ATG TGG TGG TGG TGG
   118147  CAC *  7    19/21     CAC CAC TAC CAC CTC CAC CAC
   121459  AGC *  7    19/21     AGC AGC GGC AGC AGC AGC AAC
   159017  ATA *  7    19/21     ATA ATA ATA ATA ATA ATA TTT
   161612  ATA *  7    19/21     ATA ATA ATA ATA ATA ATA TTT
   230729  TCA *  8    22/24     TCA TAA TCA TCA TCA TCA TCA TCT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       257324 
 Total number of repeats detected..............       14 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  AGC      2       1       0       1       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAC      2       1       0       0       1       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    2 ATA +   0 TAA +   0 ATT +   1 TTA +    0 TAT      =    4 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   1 GTT +   0 TTG +    0 TGT      =    1 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    1 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   1 GAG +   0 CCT +   0 CTC +    1 TCC      =    2 
   2 AGC +    0 GCA +   0 CAG +   1 GCT +   0 CTG +    0 TGC      =    3 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   2 CAC +   0 GGT +   0 GTG +    1 TGG      =    3 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7303875|gb|AE003833.1|AE003833 Drosophila melanogaster genomic scaffold 142000013386047 section 43 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

      273  TTA *  8    22/24     TTA TTA TTA TTA TTA TTA TTC ATA
     8734  CAA *  7    19/21     CAA CAA AAA CAA CAG CAA CAA
    45761  GTT *  9    25/27     GTT TTT GTT TTT GTT GTT GTT GTT GTT
    72982  GTT * 10    28/30     GTT GTT GTT GTT GTT GTG GTT GTT GTT GTG
    81740  CTG *  7    19/21     CTG CTC CTG CTC CTG CTG CTG
    88005  TCA *  7    19/21     TCA TCA TCA TCA TCA TCG CCA
    88900  CAG *  8    22/24     CAG CAT CGG CAG CAG CAG CAG CAG
   105314  GCT *  7    19/21     GCT GGT GCT GCT GTT GCT GCT
   105960  TGC *  9    25/27     TGC TGC TGC TGT TGC TGC TGC TGC TGG
   106236  GCT *  9    26/27     GCT GCT GCT ACT GCT GCT GCT GCT GCT
   106404  TGC *  8    22/24     TGC TGC TGC TGC TGT TGC TGT TGC
   106449  TGC * 11    31/33     TGC TGC TGC TGC TGG TGT TGC TGC TGC TGC TGC
   106553  CTG *  7    19/21     CTG CTG CTG CTG TTG CTG CGG
   120111  TGG * 12    33/36     TGG TGG TGG TGG TGG TGA TGG TGG TGG TGG TGC TGC
   120318  TGC *  7    19/21     TGC TGC TGC GGC TGC TGC TGT
   120362  TGC *  7    19/21     TGC TGC GGC TGT TGC TGC TGC
   120400  CTG *  7    19/21     CTG CTG CTG CTG CCG CCG CTG
   128519  TGC *  7    20/21     TGC TGT TGC TGC TGC TGC TGC
   129245  GCT *  8    23/24     GCT GCT GCT GCT GCT GCT GCT GCC
   129365  CTG *  7    19/21     CTG CTG CTG CTG CTG TTG TTG
   129492  TGC *  7    19/21     TGC TGC TGC TGG TGT TGC TGC
   137296  GTT * 10    27/30     GTT GTT GTT GTC GTT GTG GTT GTT GTT GCT
   144028  TAT *  8    22/24     TAT TAT TAT TAC TAT TAT TAT TGT
   163543  TTG *  7    19/21     TTG TTG TTG TTG TTG TGA TTG
   205740  GCA *  7    19/21     GCA GCA GCA ACA GCA TCA GCA
   218459  AGC *  7    19/21     AGC AGC AAC AAC AGC AGC AGC
   218515  CAG *  7    19/21     CAG CAG CAA CAG CAG CAG CAA
   242780  GAG *  8    22/24     GAG GAG AAG GAG GAT GAG GAG GAG
   250659  CTC *  7    19/21     CTC CTC CTC CTG CTC CTC CGC
   257633  CAA *  8    23/24     CAA CAA CAA CAA TAA CAA CAA CAA
   258493  CAG * 10    29/30     CAG CAG CAG CAG CAC CAG CAG CAG CAG CAG
   259078  CAA *  7    19/21     CAA CAA CAA CAA CAA CAC CAC
   259105  CAA * 15    41/45     CAA CAA CAA CAA CAC CAA CAA CAA CAA CAA CAA CAG CAA CAT CAG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       265562 
 Total number of repeats detected..............       33 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGC      7       6       1       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      3       1       2       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      3       3       0       0       0       0       0       0       0       0       0       0       0   
  CAA      4       3       0       1       0       0       0       0       0       0       0       0       0   
  CAG      3       2       1       0       0       0       0       0       0       0       0       0       0   
  CTG      4       4       0       0       0       0       0       0       0       0       0       0       0   
  CTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   1 TTA +    1 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   4 CAA +   3 GTT +   1 TTG +    0 TGT      =    8 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    1 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   1 GAG +   0 CCT +   1 CTC +    0 TCC      =    2 
   1 AGC +    1 GCA +   3 CAG +   3 GCT +   4 CTG +    7 TGC      =   19 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    1 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7303842|gb|AE003832.1|AE003832 Drosophila melanogaster genomic scaffold 142000013386047 section 42 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    11490  AGC *  7    19/21     AGC AGC AAC AAC AGC AGC AGC
    13630  AAT *  7    19/21     AAT AAT AAT AAT AAT AAT TAA
    18812  GAG *  7    19/21     GAG AAG GTG GAG GAG GAG GAG
    67814  CAG *  7    19/21     CAG CAG CAG CAG CAA CAA CAG
    75557  CAG * 10    28/30     CAG CAG CAG CAG CAG CAG CCG CAG CAG CCG
    75709  GCA *  8    23/24     GCA GCT GCA GCA GCA GCA GCA GCA
    76691  TCA *  8    23/24     TCA TCA TCA TCA TCA TCA TCA GCA
    79655  AGC * 10    28/30     AGC AGT AGC AGC AGC AGC AGC AGC AGC ATC
   131305  CTG * 10    29/30     CTG CTG CTG CTG CTG CTG CTG CTG CTC CTG
   136786  ATT * 14    39/42     ATT ATT ATT ATT ATT ATT ATT ATT ATC ATT ATT TTC ATT ATT
   152254  TAC *  8    23/24     TAC TAC TAC GAC TAC TAC TAC TAC
   193846  CAG *  7    19/21     CAG CAG CAG CAA CAG CAG CCG
   199292  GCA *  7    20/21     GCA GCA GCA GCA GAA GCA GCA
   229091  AGC *  7    19/21     AGC TGC AGC AGC AGT AGC AGC
   235174  AAC *  7    19/21     AAC CAC AAC AAC GAC AAC AAC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       261713 
 Total number of repeats detected..............       15 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATT      1       0       0       1       0       0       0       0       0       0       0       0       0   
  AGC      3       2       1       0       0       0       0       0       0       0       0       0       0   
  TAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAG      3       2       1       0       0       0       0       0       0       0       0       0       0   
  CTG      1       0       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   1 ATT +   0 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    1 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    1 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    1 TAC      =    1 
   0 AGG +    0 GGA +   1 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   3 AGC +    2 GCA +   3 CAG +   0 GCT +   1 CTG +    0 TGC      =    9 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7303794|gb|AE003831.1|AE003831 Drosophila melanogaster genomic scaffold 142000013386047 section 41 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

      490  GTT *  7    19/21     GTT GTT GTT GTT GTT GCT GTA
     7048  GGT *  7    19/21     GGT GGT GGT GGT AAT GGT GGT
    29934  ATG *  7    19/21     ATG ACG ACG ATG ATG ATG ATG
    65736  ACA * 10    27/30     ACA ACA ACA ACT ACC ACA ACA ACA ACA ACC
    66018  ACA *  8    22/24     ACA ACA ACA ACA ACC ACA ACA ACG
    75250  TCA *  7    19/21     TCA TCA TCA TCA TCA CCA TAA
   111407  GTA *  8    22/24     GTA GTT GTA GAA GTA GTA GTA GTA
   119232  AAC *  7    20/21     AAC ACC AAC AAC AAC AAC AAC
   128814  GCG *  7    19/21     GCG GCG GCG GCA GCA GCG GCG
   170554  GAG *  8    22/24     GAG GTG GAG GAG GAG GAG GAG GAA
   176889  TGC *  8    22/24     TGC TGC TGC TGC TGC TAC TGC CGC
   181884  ATA *  7    19/21     ATA AAA ATA AAA ATA ATA ATA
   191987  GCA *  7    19/21     GCA GCA GCA ACA GCA GCA GCC
   192197  CAG * 10    27/30     CAG CAG CAG CAA CAG TAG CAG CAG CAG CAA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       260916 
 Total number of repeats detected..............       14 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      2       1       1       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       0       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    1 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    2 ACA +   0 CAA +   1 GTT +   0 TTG +    0 TGT      =    4 
   1 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    1 TCA      =    2 
   0 AGT +    1 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    1 
   0 AGG +    0 GGA +   1 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   0 AGC +    1 GCA +   1 CAG +   0 GCT +   0 CTG +    1 TGC      =    3 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   1 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    1 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7303755|gb|AE003830.1|AE003830 Drosophila melanogaster genomic scaffold 142000013386047 section 40 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     4318  CAA * 11    31/33     CAA CAA CAA CAA CTA CAA CAA CAA CAA CAA CAG
     6964  TCA *  8    23/24     TCA TCA TCA TCG TCA TCA TCA TCA
    36863  CAA *  8    22/24     CAA CAA CAA CAA TAA CAA CAA CAG
    36947  CAA *  7    19/21     CAA CAA CAA CAG CAA CAA TAA
    39658  GCT *  7    19/21     GCT GCT GCT GTT GCT GTT GCT
    39681  TGC *  7    19/21     TGC TGC TGC TCC TGC TCC TGC
    58229  GAG *  8    22/24     GAG GAG GAG GTG GAG GAG TAG GAG
   110440  GCT * 14    38/42     GCT GCT GCT GCT GCT ACT GCC GCT GCT GCT GCT GCT GCT ACC
   136744  GCA * 10    27/30     GCA GCA GCA ACA GCA ACA GCA GCA GCA ACA
   136775  CAG * 12    33/36     CAG CAG CAG CAG CAG CAG CAA CAG CAA CAG CAG CAA
   138420  CAG * 10    27/30     CAG CAG CAG CAA CAG CAG CAG CAG CAG GTG
   138743  CAG *  7    20/21     CAG CAG CAG CAG CAG CGG CAG
   139404  GCA * 10    28/30     GCA GCA GCA GCA GCA GCA GCC GCC GCA GCA
   147119  CAA *  8    23/24     CAA CAA CAA CAA CAA CAC CAA CAA
   147171  AGC * 11    30/33     AGC AGC AGC AGC AGC AGC AGC AGC AAC AAC AAC
   159696  CTG * 11    30/33     CTG CGG ATG CTG CTG CTG CTG CTG CTG CGG CTG
   172908  CCA *  7    19/21     CCA TCA CCA TCA CCA CCA CCA
   185881  AGC *  7    19/21     AGC AGC AAC AAC AGC AGC AGC
   185937  CAG *  7    19/21     CAG CAG CAA CAG CAG CAG CAA
   198429  GCT *  8    23/24     GCT GCT GCT GCT GCT GCT GCT GCC
   205012  CAT *  9    25/27     CAT CAC CAT CAT CAT CAT CAT CAT CAG
   217652  GCA *  8    22/24     GCA GCA GCA GCA GCG GCA GAA GCA
   219750  GGC *  7    19/21     GGC GGC GGC GAC GGC GGC GGA
   243403  TGT *  8    22/24     TGT AGT AGT TGT TGT TGT TGT TGT
   245858  GCT *  8    22/24     GCT GCT ACT GCT GCT GCT GCT GCA
   249463  ATA *  7    20/21     ATA ATA ATA ATA ATA ATA ATG
   252259  TGG *  8    22/24     TGG TGG TGG TGG TGG TGG TGG CCG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       261895 
 Total number of repeats detected..............       27 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      2       1       1       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      3       1       2       0       0       0       0       0       0       0       0       0       0   
  GCT      4       3       0       1       0       0       0       0       0       0       0       0       0   
  CAA      4       3       1       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      4       2       2       0       0       0       0       0       0       0       0       0       0   
  CTG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    1 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   4 CAA +   0 GTT +   0 TTG +    1 TGT      =    5 
   0 ATG +    0 TGA +   0 GAT +   1 CAT +   0 ATC +    1 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   1 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   2 AGC +    3 GCA +   4 CAG +   4 GCT +   1 CTG +    1 TGC      =   15 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    1 CCA +   0 CAC +   0 GGT +   0 GTG +    1 TGG      =    2 
   1 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7303717|gb|AE003829.1|AE003829 Drosophila melanogaster genomic scaffold 142000013386047 section 39 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     3949  CTC *  9    25/27     CTC CGC CGC CTC CTC CTC CTC CTC CTC
     4789  TAT * 18    50/54     TAT TAT AAT TAT TAT TAA TAT TAT TAT TAT TAT TGT TAT TAT TAT TGT TAT TAT
     6814  TAT * 18    50/54     TAT TAT AAT TAT TAT TAA TAT TAT TAT TAT TAT TGT TAT TAT TAT TGT TAT TAT
    14485  CTG *  7    19/21     CTG CTG AAG CTG CTG CTG CTG
    14584  CTG * 10    28/30     CTG CTG TTG CTG CTG CTG CTG CTG CTG TTG
    16985  GCT *  7    19/21     GCT GCT GCG GCG GCT GCT GCT
    17033  TGC *  8    22/24     TGC TGC TGC TGC TGT TGC TGT TGC
    18457  TGC *  9    25/27     TGC TGC TGC TGC TGC TGT TGC TGC TGG
    18519  CTG *  7    19/21     CTG CTG CTG TTG CTG CTG TTG
    31902  AAG *  8    23/24     AAG AAG AAG AAG AAG AAG CAG AAG
    44010  CAG * 11    30/33     CAG CAG TAG CAG CAG CAG CAG CAG CAG TGG CAG
    51280  ACT * 10    27/30     ACT ACT ACT TCT ACT AGT ACT ACT ACT ACG
    60441  CGG *  7    19/21     CGG CGG CGG CAG CAG CGG CGG
    62037  AGC *  8    22/24     AGC AGC AGC AAC AGC AGC AAC AGC
    70265  AAG *  8    22/24     AAG TAG AAG AAG AAG AAG AAG AGG
    73686  ACA *  8    22/24     ACA ACA ACA ACA ACA ACA ACA GTA
    74669  CAA *  7    19/21     CAA CAA CAA CAG CAG CAA CAA
    77590  ATC *  7    20/21     ATC ATC ATC ATC ATC ATC GTC
    81991  GCG *  8    22/24     GCG GCG GCG GCG GCG GCG GCA ACG
    83074  GAT *  8    22/24     GAT AGT GAT GAT GAT GAT GAT GAT
    84113  AAC *  7    19/21     AAC AAC AAC AAC AAA AGC AAC
   108290  GGC *  7    19/21     GGC GGC GCC GGA GGC GGC GGC
   108538  AGC *  8    22/24     AGC AGC GGC AGC AGC AGC AGC TGC
   129889  TGA *  7    19/21     TGA TGT TTA TGA TGA TGA TGA
   131739  GCA *  7    19/21     GCA GCG GCG GCA GCA GCA GCA
   138451  AGC * 10    27/30     AGC AGC AGC ATC AGC AGC AGC ATC AGC AAC
   165681  AGG *  7    19/21     AGG ATG AGG AGA AGG AGG AGG
   197632  TGT *  7    19/21     TGT TGT TAT TAT TGT TGT TGT
   197664  TTG *  7    19/21     TTG TTG TTG TTA TTG TTG CTG
   197823  TCG *  8    22/24     TCG TCG TCG TCT TCG TAG TCG TCG
   198285  TGC *  7    19/21     TGC TGC TGC TGC TGC TCC CGC
   213932  CAA *  7    19/21     CAA CAG CAA CAA CAA CAA CAC
   216890  CAA *  7    19/21     CAA CAT CAA CAG CAA CAA CAA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       258492 
 Total number of repeats detected..............       33 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      3       2       1       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TAT      2       0       0       0       2       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      3       3       0       0       0       0       0       0       0       0       0       0       0   
  TCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      3       3       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CTG      3       2       1       0       0       0       0       0       0       0       0       0       0   
  CTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    2 TAT      =    2 
   2 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    2 
   1 AAC +    1 ACA +   3 CAA +   0 GTT +   1 TTG +    1 TGT      =    7 
   0 ATG +    1 TGA +   1 GAT +   0 CAT +   1 ATC +    0 TCA      =    3 
   0 AGT +    0 GTA +   0 TAG +   1 ACT +   0 CTA +    0 TAC      =    1 
   1 AGG +    0 GGA +   0 GAG +   0 CCT +   1 CTC +    0 TCC      =    2 
   3 AGC +    1 GCA +   1 CAG +   1 GCT +   3 CTG +    3 TGC      =   12 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    1 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   1 GGC +    1 GCG +   1 CGG +   0 GCC +   0 CCG +    0 CGC      =    3 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7303677|gb|AE003828.1|AE003828 Drosophila melanogaster genomic scaffold 142000013386047 section 38 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    52094  CAG *  9    25/27     CAG CAG CAG CAA CAG CAG CAG CAG AAG
    66705  CTC *  8    22/24     CTC ATC CTC CTC CTC CTC CTC TTC
    92110  TAA * 10    28/30     TAA TAA TAA TAA TAA TAA TAA TAA TAC AAA
    95121  CAA *  7    19/21     CAA CAA CAA GAA CAA TAA CAA
    96123  AGA *  8    22/24     AGA AGA AGA AGA AGA AGG CGA AGA
    99049  CAA *  7    19/21     CAA CAA CAA CAA AAG CAA CAA
   106770  CAT *  7    19/21     CAT CAT CAT CAT CAT CTG CAT
   116673  TGT *  9    25/27     TGT TGA TGT TGT TGT TGT TGT TGT TAT
   144424  CAG *  7    19/21     CAG CAG CAC CAG CAG CAG CAA
   178417  TAT *  7    20/21     TAT TAT GAT TAT TAT TAT TAT
   181460  TGC *  8    22/24     TGC TGC TGC TGT TGC TGT TGC TGC
   183028  GTA *  9    25/27     GTA GTA GTA GTA GTA GTA GTA GTT GAA
   183065  TGT *  7    19/21     TGT GGT TGT TGT TGA TGT TGT
   184233  TGC *  8    22/24     TGC TGC TGC TGC TGT TGC TGC TGG
   207110  CAG *  8    22/24     CAG CAG AAG CAG CAG CAT CAG CAG
   217861  TCC *  8    22/24     TCC TCC GTC TCC TCC TCC TCC TCC
   218463  CAA *  7    19/21     CAA CAA TAA CAA CAA CAG CAA
   218543  GAT * 14    38/42     GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAG AAG GAG
   235107  TAT * 18    50/54     TAT TAT AAT TAT TAT TAA TAT TAT TAT TAT TAT TGT TAT TAT TAT TGT TAT TAT
   242070  TAT * 18    50/54     TAT TAT AAT TAT TAT TAA TAT TAT TAT TAT TAT TGT TAT TAT TAT TGT TAT TAT
   248816  ACC *  7    19/21     ACC ACC ACC ACC ACC AGC AGC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       259920 
 Total number of repeats detected..............       21 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TAT      3       1       0       0       2       0       0       0       0       0       0       0       0   
  TGT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       0       0       1       0       0       0       0       0       0       0       0       0   
  GTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      3       3       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      3       3       0       0       0       0       0       0       0       0       0       0       0   
  CTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   1 TAA +   0 ATT +   0 TTA +    3 TAT      =    4 
   0 AAG +    1 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    1 
   0 AAC +    0 ACA +   3 CAA +   0 GTT +   0 TTG +    2 TGT      =    5 
   0 ATG +    0 TGA +   1 GAT +   1 CAT +   0 ATC +    0 TCA      =    2 
   0 AGT +    1 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    1 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   1 CTC +    1 TCC      =    2 
   0 AGC +    0 GCA +   3 CAG +   0 GCT +   0 CTG +    2 TGC      =    5 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   1 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7303662|gb|AE003827.1|AE003827 Drosophila melanogaster genomic scaffold 142000013386047 section 37 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    14668  TGT * 13    36/39     TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TCA GGT
    45501  ACC *  8    22/24     ACC ACC ACC ACC ACC ACC ACC AAT
    46702  TGC *  8    23/24     TGC TGC TGC TGC TGC TGC TGC TGA
    71014  CAA *  7    19/21     CAA CAA CGA CAA CAA CAA CAG
    71270  CAG * 14    38/42     CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAA CAA CAA CAA
    74938  TGC * 10    27/30     TGC TGC TGC TGC TGC TGC TGC CGC TGC TTT
    76455  AAC *  7    19/21     AAC AAC AAC AAC AAC AAG AAA
    86543  TAC *  7    20/21     TAC TAC TAC TAC TAC TAC TAT
    92525  GAT *  9    25/27     GAT GAT GAT GAT GAT CAT GAT GGT GAT
    92913  TGC * 10    27/30     TGC TGC TGC TGC TGC TGC TGC TGC CGT TGT
    96073  GCT * 21    57/63     GCT GAT GTT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GTT GCT GCC TCC
   100214  CAG * 17    47/51     CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAA CAT CAG CAA CAG CAA CAG
   102760  GCT * 10    28/30     GCT GCC TCT GCT GCT GCT GCT GCT GCT GCT
   104038  GCT * 10    27/30     GCT GCT GCT GCT GCT TGT GCT GCT GCT GCC
   106460  CAG * 12    33/36     CAG CGG CAG CGG CAG CAG CAG CAG CAG CAG CAG CAA
   106742  CAG * 10    28/30     CAG CAG CAG CAG CAG CAG CAG CAG CAG CGC
   109596  CTG *  8    22/24     CTG CTG CTG CTG CTG CTT TTG CTG
   110039  GCA *  9    25/27     GCA GCA GCA GCA GCA GCA GCA GCA ACT
   127044  TAT *  7    20/21     TAT TAT TAT TAT TAT TAT TTT
   143186  TGC *  8    22/24     TGC GGC TGC TGC TGC TGC TGT TGC
   143222  TGA *  8    22/24     TGA TGA TGA TGA TGA TGC TGA TGC
   172408  CAG *  7    19/21     CAG CAT CAG CAA CAG CAG CAG
   172742  CAG *  8    22/24     CAG CAG CAG CAG CAA CAG CAA CAG
   172769  CAG * 10    28/30     CAG CAG CAG CAG CAG CAG CAG CAG CAG CTC
   172873  GCA *  8    22/24     GCA ACT GCA GCA GCA GCA GCA GCA
   172970  AGC * 10    28/30     AGC AGC AGC AGC AGT AGC AGC AAC AGC AGC
   173020  CAG *  7    19/21     CAG TAG CAG CAG CAG CAT CAG
   173214  GCA *  7    19/21     GCA GCA GCA ACA GCA ACA GCA
   173236  CAG *  8    22/24     CAG CAG CAG CAG CAA CAC CAG CAG
   184779  ATT * 11    30/33     ATT ATT ATT ATT ATT ATT ATT ATT ATT ATG GCT
   186044  TGC *  9    25/27     TGC TGC TGC TGC TGA TGC TGC TGC AGC
   186413  TGC *  8    23/24     TGC TGC TGC CGC TGC TGC TGC TGC
   195105  GCA *  8    22/24     GCA GCA GCA GCA GCA TCA GCA TCA
   203188  TGC *  8    23/24     TGC TCC TGC TGC TGC TGC TGC TGC
   219347  CTG *  7    20/21     CTG CTG CTG CTG CTG CTG CTC
   244003  GAG * 10    28/30     GAG GAG GAG GAG GAG GAG GAG GAG GAT GCG
   246001  TGT *  9    26/27     TGT TGT TGT TGT TGT TGT TGT TGT TGC
   254123  AAC *  8    22/24     AAC AAC AAC AAC AAC AAC GAA AAC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       261694 
 Total number of repeats detected..............       38 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  ATT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  AGC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  ACC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      2       1       0       1       0       0       0       0       0       0       0       0       0   
  TGC      7       5       2       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GCA      4       4       0       0       0       0       0       0       0       0       0       0       0   
  GCT      3       0       2       0       0       1       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      9       4       3       1       1       0       0       0       0       0       0       0       0   
  CTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   1 ATT +   0 TTA +    1 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   2 AAC +    0 ACA +   1 CAA +   0 GTT +   0 TTG +    2 TGT      =    5 
   0 ATG +    1 TGA +   1 GAT +   0 CAT +   0 ATC +    0 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    1 TAC      =    1 
   0 AGG +    0 GGA +   1 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   1 AGC +    4 GCA +   9 CAG +   3 GCT +   2 CTG +    7 TGC      =   26 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   1 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7303588|gb|AE003826.1|AE003826 Drosophila melanogaster genomic scaffold 142000013386047 section 36 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     7989  TTG *  7    19/21     TTG TTG TTA TTA TTG TTG TTG
     8412  TGC *  7    19/21     TGC TGC TGT TGT TGC TGC TGC
     8866  GCT *  7    19/21     GCT GCT GCT GTT GTT GCT GCT
    11893  TTG *  7    20/21     TTG TTG TTG TTG TTG TGG TTG
    13200  TGC *  7    20/21     TGC TGC TGC TGG TGC TGC TGC
    15909  CTC *  7    19/21     CTC GTC CTC CTC CTC CGC CTC
    36572  ACA *  7    19/21     ACA ACA ACG ACA ACA ACA TCA
    83095  GCA * 11    31/33     GCA ACA GCA GCA GCA GCA GCA GCA GCA ACA GCA
    83996  ACA *  8    22/24     ACA ACA ACA ACA ACA ACA ACA AAG
   101494  ATA *  8    22/24     ATA ATA ATA ATA ATA ATA TTA TTA
   102467  ACG *  8    22/24     ACG ACG ACG ACG ACG ACG CCG CCG
   103755  TGC *  7    20/21     TGC TGC TGC TGG TGC TGC TGC
   104276  CAT * 10    27/30     CAT CAT CAT CAA CAT CAC CAT CAT CAT CAC
   104357  CAG *  7    19/21     CAG TGG CAG CAG CAG CAG CAG
   139186  GCT * 10    27/30     GCT GCT GCT GCT GCT GCG GCC GCT GCT GCA
   141304  TTA *  7    19/21     TTA TTT TTA TTA TTA TTA TTT
   158707  CTG *  7    19/21     CTG GTG CTG TTG CTG CTG CTG
   159152  TGC *  7    19/21     TGC TGC TGC TGC TGC TGT TGT
   192392  TGG *  7    20/21     TGG TGG TGA TGG TGG TGG TGG
   195223  CAC *  7    20/21     CAC CAC CAC CAT CAC CAC CAC
   198029  GGC *  8    22/24     GGC GGC GGC GGC GGA GGC GGC GGA
   201358  CTG * 17    47/51     CTG CTG CTG TTG CTG CTG CTG CTG TTG TTG CTG CTG CTG CTG CTG TTG CTG
   201599  TGC *  8    22/24     TGC TGT TGC TGC TGC TGT TGC TGC
   256799  GCT *  7    19/21     GCT GCT GCT GCT GCT GCT GGG
   256824  CTG *  7    19/21     CTG CTG CTG TTG CTG TTG CTG
   257431  TGC *  8    22/24     TGC TGC TGC TGT TGT TGC TGC TGC
   257775  CTG *  7    19/21     CTG CAG TTG CTG CTG CTG CTG
   258709  CTG *  8    23/24     CTG TTG CTG CTG CTG CTG CTG CTG
   259214  TTA *  7    19/21     TTA TTG TTA TTA TTA TTA TTG
   259314  TGC *  7    19/21     TGC TGC TGC TGT TGC TGT TGC
   259354  TGC *  7    19/21     TGC TGC TGC TGT TGC TGC CGC
   259579  TGC * 13    36/39     TGC TGC TGC TGC TGC TGC TGC TGC CGC TGC TGC TGT GGC
   268761  TGC *  7    19/21     TGC TGC TGC TGC CGC CGC TGC
   273412  CGT *  8    22/24     CGT CGT CGT CGT CGT CGC CGT CGC
   274907  TGG * 11    31/33     TGG TGG TGG TGG TGG TGG TGG TGG TAA TGG TGG
   282331  GTT * 12    34/36     GTT GTT GTT GTT GTT GTT GTT GTT GTT TTT GTA GTT
   287218  AGC *  8    23/24     AGC AGC AGC AGC AGC AGC AGC AAC
   289731  ACC *  7    19/21     ACC AAC ACC ACC ACC ACC CCC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       291089 
 Total number of repeats detected..............       38 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  ACG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGG      2       1       1       0       0       0       0       0       0       0       0       0       0   
  TGC     10       9       0       1       0       0       0       0       0       0       0       0       0   
  GTT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GCT      3       2       1       0       0       0       0       0       0       0       0       0       0   
  CAT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      5       4       0       0       1       0       0       0       0       0       0       0       0   
  CTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    1 ATA +   0 TAA +   0 ATT +   2 TTA +    0 TAT      =    3 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    2 ACA +   0 CAA +   1 GTT +   2 TTG +    0 TGT      =    5 
   0 ATG +    0 TGA +   0 GAT +   1 CAT +   0 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   1 CTC +    0 TCC      =    1 
   1 AGC +    1 GCA +   1 CAG +   3 GCT +   5 CTG +   10 TGC      =   21 
   1 ACG +    0 CGA +   0 GAC +   1 CGT +   0 GTC +    0 TCG      =    2 
   1 ACC +    0 CCA +   1 CAC +   0 GGT +   0 GTG +    2 TGG      =    4 
   1 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7303570|gb|AE003825.1|AE003825 Drosophila melanogaster genomic scaffold 142000013386047 section 35 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     5089  GGA *  7    21/21     GGA GGA GGA GGA GGA GGA GGA
    22292  GAG *  7    20/21     GAG GAG GAG GAG GAG GAC GAG
    22674  TGT * 13    36/39     TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGC TAT TGG
    22855  TGT * 10    27/30     TGT GGT TGT TGT GGT TGT TGT TGT TGT GGT
    22900  TGT * 14    38/42     TGT TGT CGT TGT TGT TGT TGT TGA TGT AGT TGT TGT TGT AGT
    25972  TAA *  7    19/21     TAA TCA TAA TAA TAA TAA TTA
    29131  ATG *  7    19/21     ATG ATT ACG ATG ATG ATG ATG
    67098  CAA *  7    19/21     CAA CAA CAA AAG CAA CAA CAA
    81996  GTT *  8    22/24     GTT GTT GTT CTT ATT GTT GTT GTT
    94259  TTA *  7    19/21     TTA TTA TTA TTA TTA TTA TCC
   101452  GCA *  7    19/21     GCA CCG GCA GCA GCA GCA GCA
   101540  CAG *  7    19/21     CAG CGG CAG CAG CAG CAT CAG
   101723  CAG *  7    19/21     CAG CAG CGG CAG CAA CAG CAG
   101799  AGC * 10    27/30     AGC AGC AGC AGC AGC AGC CGC AGC AAC AAC
   104486  CAG * 12    33/36     CAG CAG AAA CAG CAG CAG CAG CAG CAG CAG CAG CGG
   134211  GCT *  7    19/21     GCT GCT GCT GCC GCT GCT TCT
   136747  GTT *  7    19/21     GTT GTT GTT GTT GTT GTT GCA
   141153  AAC *  7    19/21     AAC AAC AAG TAC AAC AAC AAC
   142846  TTC *  7    19/21     TTC TGC TGC TTC TTC TTC TTC
   149316  GAG *  7    19/21     GAG TAG AAG GAG GAG GAG GAG
   150217  GTT *  7    19/21     GTT GTC ATT GTT GTT GTT GTT
   150283  TTG *  7    19/21     TTG TTG TTC ATG TTG TTG TTG
   150420  GTT *  7    20/21     GTT GTT GTT GTC GTT GTT GTT
   157694  ACA *  8    22/24     ACA ACA ACA ACA GAA ACA ACA ACA
   162606  CAA *  7    19/21     CAA CAA CAA CAA CAC CAA TAA
   164064  GCA *  8    22/24     GCA ACA GCA GCA GCA GCA ACA GCA
   164095  CAG *  8    22/24     CAG CAG CAG CAG CAA CAG CAA CAG
   172695  CTC *  8    22/24     CTC CTC CTC CTC CTT CTC CTT CTC
   219886  CAG * 11    30/33     CAG CAA CAG CAG CAG CAG CAA CAG CAG CAG CAA
   220027  GCT *  7    19/21     GCT GCT GCA GCT GCT GCT GCG
   220213  GAG *  8    22/24     GAG GAG GAG GAG GCG GAG GAG GAT
   234118  TCA *  7    19/21     TCA TCA TCA GCA TCA ACA TCA
   234143  CAG *  7    20/21     CAG CAG CAG CAG CAG GAG CAG
   247716  ATC *  7    19/21     ATC ATC ATC TTC ATC ATC TTC
   265573  GTT *  8    22/24     GTT GTT GTT GTT GTA GTT GCT GTT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       278196 
 Total number of repeats detected..............       35 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      3       0       1       2       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAG      3       3       0       0       0       0       0       0       0       0       0       0       0   
  GTT      5       5       0       0       0       0       0       0       0       0       0       0       0   
  GGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAG      6       4       2       0       0       0       0       0       0       0       0       0       0   
  CTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   1 TAA +   0 ATT +   1 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   1 TTC +    0 TCT      =    1 
   1 AAC +    1 ACA +   2 CAA +   5 GTT +   1 TTG +    3 TGT      =   13 
   1 ATG +    0 TGA +   0 GAT +   0 CAT +   1 ATC +    1 TCA      =    3 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    1 GGA +   3 GAG +   0 CCT +   1 CTC +    0 TCC      =    5 
   1 AGC +    2 GCA +   6 CAG +   2 GCT +   0 CTG +    0 TGC      =   11 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7303542|gb|AE003824.1|AE003824 Drosophila melanogaster genomic scaffold 142000013386047 section 34 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     1198  CTG *  7    19/21     CTG CTG CTC CTG CTG CTC CTG
    30552  GCT *  7    19/21     GCT GCT GCT GTT GTT GCT GCT
    30575  TGC *  7    20/21     TGC GGC TGC TGC TGC TGC TGC
    31746  TGT *  8    22/24     TGT GGT TGT TGT TGT TGT TGA TGT
    39293  GCC *  7    19/21     GCC GCC GAC GCC GCA GCC GCC
    41783  GCT *  7    20/21     GCT GCT GCT GCT GCT GCT GCA
    54720  CTT * 10    29/30     CTT CTT CTC CTT CTT CTT CTT CTT CTT CTT
    85968  TGC *  8    22/24     TGC TGC TGC TGC TGC TGC GGC AGC
    86831  TCA *  7    19/21     TCA TCA TCA TCA TCT TCC TCA
    87476  CAG * 12    33/36     CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CTG AAA
    89563  CAA *  7    19/21     CAA TAT CAA CAA CAA CAA CAA
   130106  TAT *  7    19/21     TAT TGT TAT TAT TAT TAT TTT
   161431  GCA *  7    19/21     GCA GCA TCA GCA GCA GCA GCT
   166224  ACA * 12    33/36     ACA ACA ACA ACA ACA ACA ATA ATA ACA ACA ACA ACG
   178087  CAC *  7    20/21     CAC CAC CAC CAC CAC CAC CAA
   185531  TGC *  7    19/21     TGC TGC TGC TGC TGC TGC TAA
   185635  CTG *  8    22/24     CTG CTG CCG CTG CTG CTG CTG CTA
   185687  TGC *  8    23/24     TGC TGC TGC TGC TAC TGC TGC TGC
   186148  TTA *  7    19/21     TTA TTA TTA TTA TTA TTA TGG
   189148  GAG *  7    19/21     GAG GAG GAG GAG CGG GAG GAG
   206110  AGC *  9    25/27     AGC AGC AGC AGC AGC AGC AGC AGC GAC
   239779  AAG *  8    22/24     AAG AAG AAG AAG AGG AAG AGG AAG
   241204  ACA *  7    19/21     ACA ACA ACA ACA ACG ACA GCA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       249001 
 Total number of repeats detected..............       23 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      2       1       1       0       0       0       0       0       0       0       0       0       0   
  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      4       4       0       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   1 TTA +    1 TAT      =    2 
   1 AAG +    0 AGA +   0 GAA +   1 CTT +   0 TTC +    0 TCT      =    2 
   0 AAC +    2 ACA +   1 CAA +   0 GTT +   0 TTG +    1 TGT      =    4 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    1 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   1 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   1 AGC +    1 GCA +   1 CAG +   2 GCT +   2 CTG +    4 TGC      =   11 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   1 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   1 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7303489|gb|AE003823.1|AE003823 Drosophila melanogaster genomic scaffold 142000013386047 section 33 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     5555  GGT *  7    19/21     GGT GGG GTT GGT GGT GGT GGT
    24804  TGA *  9    25/27     TGA TGA TTA TGA TGA TGA TGA TGG TGA
    32982  GGT *  7    19/21     GGT GGC GGT GGT GGT GAT GGT
    57260  CAG *  8    22/24     CAG CAG CAG CAA CAG CAG CAG CAA
    57285  AGC *  9    25/27     AGC AGC AGC AGC AAC AGC AGC TGC AGC
   111014  GCA *  7    19/21     GCA GCA GCA GCA GCA GGA GAA
   133035  TCA *  7    19/21     TCA TCA TCA TCT TCA TCA TCG
   133059  TCA *  7    20/21     TCA TCA TCA TCA TCA TCA TGA
   134828  TAC *  7    20/21     TAC TAC TAC TAC TAC TAC TGC
   139834  AGC *  7    19/21     AGC AGC AGT AGC AGT AGC AGC
   141242  GCA *  8    22/24     GCA GCA GCA GCA GCA CCA ACA GCA
   149626  TAT *  7    19/21     TAT TAT TAT TAT TAT TAT TTC
   155169  TGC *  8    23/24     TGC CGC TGC TGC TGC TGC TGC TGC
   162958  TTG * 10    28/30     TTG CTG TTG TTG TTA TTG TTG TTG TTG TTG
   185972  TGA *  7    19/21     TGA TGA TGG TGA TGA TGA TGT
   191620  CAT *  7    19/21     CAT CAG CAT CAG CAT CAT CAT
   206025  CTG * 10    27/30     CTG CTG CTG CTG CTG CTG CTG CGG CGG CGG
   206338  ATA *  8    22/24     ATA GTA ATG ATA ATA ATA ATA ATA
   215615  TGC *  7    19/21     TGC TGA TGC TGC TTC TGC TGC
   239917  GTC * 10    27/30     GTC ATC GTC GTC ATC GTC GTC GTC GTC GTA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       262740 
 Total number of repeats detected..............       20 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GTC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GGT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       0       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    1 ATA +   0 TAA +   0 ATT +   0 TTA +    1 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   1 TTG +    0 TGT      =    1 
   0 ATG +    2 TGA +   0 GAT +   1 CAT +   0 ATC +    2 TCA      =    5 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    1 TAC      =    1 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   2 AGC +    2 GCA +   1 CAG +   0 GCT +   1 CTG +    2 TGC      =    8 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   1 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   2 GGT +   0 GTG +    0 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7303437|gb|AE003822.1|AE003822 Drosophila melanogaster genomic scaffold 142000013386047 section 32 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    20348  CAG * 11    30/33     CAG CGG CAG CAG CAG TAG CAG CAG CAG CGG CAG
    26336  TAT *  8    22/24     TAT TAT TAT TAT TAT TAT TGT GAT
    30800  TGC *  8    22/24     TGC TGC TGC TGC TGC TGC TGT TGT
    39190  ACA *  8    22/24     ACA ACA ACA ACA ACA ACA ACA TCG
    46602  TGA *  8    22/24     TGA TGA TAA TGA TGA TGA GGA TGA
    55907  TCA * 11    30/33     TCA TCA TCA TCA TCA TCA TCA TCA TCG TCG TCG
    56155  CTC *  9    26/27     CTC CTC ATC CTC CTC CTC CTC CTC CTC
    83716  ACG *  8    23/24     ACG ACG ACA ACG ACG ACG ACG ACG
   136435  GTG *  8    22/24     GTG GTG GTG GTG GTG GTG GTC GAG
   146596  CCA *  7    19/21     CCA CCT TCA CCA CCA CCA CCA
   182265  TAT *  7    19/21     TAT TAT TCT TAT TAT TAA TAT
   192050  CTG * 10    27/30     CTG CTG TTG TTG CTG CTG CTG CTG CTG ATG
   201402  GAG *  7    19/21     GAG GAT GAG GAC GAG GAG GAG
   229888  TGC *  7    20/21     TGC TGC TGC AGC TGC TGC TGC
   229936  TGC *  7    19/21     TGC TGC TGC GTC TGC TGC TGC
   238119  AGG *  8    23/24     AGG AGG AGG AGC AGG AGG AGG AGG
   245542  GCA *  8    22/24     GCA GCA GCA GCA GCA GCA GCA GTC
   259291  GCA *  8    22/24     GCA ACA GCA GCA GCA GCA GCA ACA
   265253  GCT *  7    19/21     GCT GCG GCT ACT GCT GCT GCT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       266350 
 Total number of repeats detected..............       19 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      3       3       0       0       0       0       0       0       0       0       0       0       0   
  TCA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CTG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    2 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    1 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    1 
   0 ATG +    1 TGA +   0 GAT +   0 CAT +   0 ATC +    1 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   1 AGG +    0 GGA +   1 GAG +   0 CCT +   1 CTC +    0 TCC      =    3 
   0 AGC +    2 GCA +   1 CAG +   1 GCT +   1 CTG +    3 TGC      =    8 
   1 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    1 CCA +   0 CAC +   0 GGT +   1 GTG +    0 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7303396|gb|AE003821.1|AE003821 Drosophila melanogaster genomic scaffold 142000013386047 section 31 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     9864  ATA *  7    19/21     ATA ATA AAA ACA ATA ATA ATA
    23050  TGT *  9    25/27     TGT TGC TGT TGT TGT TGT TGT TGT TGC
    30296  TGC *  7    20/21     TGC TGC TGC TGT TGC TGC TGC
    32196  GAA *  7    19/21     GAA GAA GAA GAA GGA GAA GCA
    38664  CTG *  8    22/24     CTG CCG CTG TTG CTG CTG CTG CTG
    50866  GGT *  7    19/21     GGT GGT GGT GGT GGT GGA GTT
    65356  GCT *  7    19/21     GCT GCT GCT GCT GTT GCT GTT
    68491  TAT *  7    19/21     TAT TAT TAT CAT TAT CAT TAT
    73809  GAT * 12    34/36     GAT GAT GAT GAT GAT GAT GAT GAT GAT TAA GAT GAT
    87281  GGC *  7    19/21     GGC GGC GGC GGC GGC GGC TCC
   116009  ATA *  7    20/21     ATA TTA ATA ATA ATA ATA ATA
   178430  CTC *  7    19/21     CTC CTC ATC CTC CTC CTG CTC
   201986  TGT *  7    19/21     TGT TGT TGT TGT TGT TCT TGG
   202113  ACG *  7    20/21     ACG ACG ACA ACG ACG ACG ACG
   228825  TCT *  7    19/21     TCT TCT TCT TCT TAT TCT TGT
   231375  AGC *  7    19/21     AGC AGC GGC CGC AGC AGC AGC
   237412  CCA * 11    30/33     CCA CCA CCA CCA CCA CCA CCA CCA CTA CTA CTA
   239035  TAA * 11    30/33     TAA TAA CAA CAA TAA TAA TAA TAA TAA TAA CAA
   266721  ATC *  9    25/27     ATC ATC GTC ATC ATC ATC ATC TTC ATC
   267037  ATG * 10    27/30     ATG ATG GCG ATG ATG ATG ATG ATG ATG ATA
   267860  CGA *  7    20/21     CGA CGA CGA CGA CGA CGA CGG
   273362  AAT * 11    30/33     AAT AAT AAT AAT AAT ACA AAT AAT AAT ATT AAT
   282731  TTG * 10    27/30     TTG TTG TTG TTG TTG TTG TTC TTG TTT TGG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       290711 
 Total number of repeats detected..............       23 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  ATA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  ATG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  ATC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCA      1       0       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    2 ATA +   1 TAA +   0 ATT +   0 TTA +    1 TAT      =    5 
   0 AAG +    0 AGA +   1 GAA +   0 CTT +   0 TTC +    1 TCT      =    2 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   1 TTG +    2 TGT      =    3 
   1 ATG +    0 TGA +   1 GAT +   0 CAT +   1 ATC +    0 TCA      =    3 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   1 CTC +    0 TCC      =    1 
   1 AGC +    0 GCA +   0 CAG +   1 GCT +   1 CTG +    1 TGC      =    4 
   1 ACG +    1 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    2 
   0 ACC +    1 CCA +   0 CAC +   1 GGT +   0 GTG +    0 TGG      =    2 
   1 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7303370|gb|AE003820.1|AE003820 Drosophila melanogaster genomic scaffold 142000013386047 section 30 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    15931  CAA *  7    19/21     CAA CAA CAA CAA CGA CAG CAA
    34822  GCA *  8    22/24     GCA GCA ACA GCA GCA GCG GCA GCA
    51775  GGT *  8    22/24     GGT GGT GGT GGT GGC GGT GGT GGG
    63438  ACA * 12    33/36     ACA AAA GCA ACA ACA ACA ACA ACA ACA ACA ACT ACA
    76557  AAC * 10    27/30     AAC AAC TAT AAC AAC AAC AAC AAC AAC ATC
    80896  GCA *  7    19/21     GCA GCA TTA GCA GCA GCA GCA
    91819  GCT *  8    22/24     GCT GCT GCT GCT GCT GCT GCT TGT
    92276  TTA *  8    22/24     TTA TTG TTA TTA TTA TTA TTA TTG
    92300  TTG * 14    38/42     TTG TTA TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG CCA
    93682  CTG * 10    27/30     CTG TTG CTG TTG CTG CTG CTG CTG CTG TTG
    93719  TGT *  8    22/24     TGT TGT TGT GGT TGT TGT TGT TGC
    93743  TGC *  7    20/21     TGC TGC TGC TGC TGC TGC TGT
    96796  CAT *  8    22/24     CAT CAC CAT CAT CGT CAT CAT CAT
   113162  AAT *  8    23/24     AAT AAT AAT CAT AAT AAT AAT AAT
   115342  ATA *  7    20/21     ATA ATA ATA ATA ATA ATA AAA
   117908  AAC * 10    27/30     AAC AAC AAC AAC AAC AAC ACC ACC AAC GAC
   117952  CAG *  7    19/21     CAG CAG CAG CAG CAG CAG AGG
   118099  CAA *  8    22/24     CAA CAA CCA CAA CAA CAA CAG CAA
   118233  TCC *  7    19/21     TCC TCC TCC TCG TCC TCC TCA
   130521  TAG *  7    21/21     TAG TAG TAG TAG TAG TAG TAG
   136135  TTG *  8    22/24     TTG TTG TTG TTG TCG TTG TTG CTG
   136974  GCA *  7    20/21     GCA GCA GCA GCA ACA GCA GCA
   146522  CCA *  8    22/24     CCA CGA CCA CCA CCA CCA CCA CCG
   166787  CTG * 11    30/33     CTG CTG CTG GTG CTG CTG GTG CTG CTG CTG GTG
   169576  GCA *  8    23/24     GCA GCA GCA GCA GCA GCA GCA GAA
   180266  TAT *  8    22/24     TAT TAT TAC TAA TAT TAT TAT TAT
   250143  GCT *  7    19/21     GCT GTT GCT GCT GCT GAT GCT
   271955  CAA *  8    22/24     CAA CAA CAA CAA CAA CAA CAA CTG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       272870 
 Total number of repeats detected..............       28 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AAC      2       0       2       0       0       0       0       0       0       0       0       0       0   
  ATA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      2       1       0       1       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      4       4       0       0       0       0       0       0       0       0       0       0       0   
  GCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAA      3       3       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      2       0       2       0       0       0       0       0       0       0       0       0       0   
  CCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    1 ATA +   0 TAA +   0 ATT +   1 TTA +    1 TAT      =    4 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   2 AAC +    1 ACA +   3 CAA +   0 GTT +   2 TTG +    1 TGT      =    9 
   0 ATG +    0 TGA +   0 GAT +   1 CAT +   0 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   1 TAG +   0 ACT +   0 CTA +    0 TAC      =    1 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    1 TCC      =    1 
   0 AGC +    4 GCA +   1 CAG +   2 GCT +   2 CTG +    1 TGC      =   10 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    1 CCA +   0 CAC +   1 GGT +   0 GTG +    0 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7303326|gb|AE003819.1|AE003819 Drosophila melanogaster genomic scaffold 142000013386047 section 29 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     4986  ACA *  9    25/27     ACA ACA ACA ACA ACA ACA ACA GCA TCA
    14502  AGC * 10    28/30     AGC TGC AGC AGC AGC AGC AGC AGC AGC ATC
    17612  CAA *  7    20/21     CAA CAA CAA CAG CAA CAA CAA
    21711  TCA *  8    22/24     TCA TCA TCA TCA CCA TCA TCC TCA
    21760  CAT *  7    19/21     CAT CAG CAT CAT CGT CAT CAT
    28456  GAT * 11    31/33     GAT GAT GAT GAT GAT GAT GAC GAT GAC GAT GAT
    42308  GCA *  8    22/24     GCA GCA GCA GCA GCA GCA GCA CAA
    58975  GCA * 10    27/30     GCA GCA GCA GCA GCA GCA GTA GGA GCA GGA
   104839  GAC *  8    22/24     GAC CAC GAC CAC GAC GAC GAC GAC
   140888  ACA * 10    27/30     ACA ACT ACA ACA AGA ACA ACA ACA ACA ACG
   141219  GTT * 10    28/30     GTT GTT GTT GTT GTT GTT GTT GTT GCT GCT
   148078  CAG *  7    19/21     CAG CAG CAG CAG CAG CAA CAA
   148212  GCA * 12    33/36     GCA GCA GCA GCA ACA GCA GCA GCA GCA GCA ACA GAA
   149892  ACA *  8    22/24     ACA GCA ACA ACA ACA ACA ACA GCA
   149916  GCA *  8    22/24     GCA GCA GCA GCA GCA ACA ACA GCA
   151042  CAG *  7    19/21     CAG CAA CAG CAG CAG CAA CAG
   151455  GCA *  7    19/21     GCA GCA GCA GCA ACA GCA GCC
   151577  AGC * 10    28/30     AGC AGC AGC AGC AAC AAC AGC AGC AGC AGC
   151789  CAG *  8    22/24     CAG CAG CAC CAC CAG CAG CAG CAG
   154010  CAA *  7    20/21     CAA CAA CAA CAA CAA CAA CAG
   154494  CAG *  8    22/24     CAG CAG CAG CAG CAG CAG CGG CGG
   155530  CAG * 17    47/51     CAG CAG CAG CAG CAG CAG CAG CAA CAG CAG CAG CAG CAA CAA CAG CAA CAG
   155581  GCT *  7    20/21     GCT GCC GCT GCT GCT GCT GCT
   169207  GAG *  7    19/21     GAG GAG GTG GAG GCG GAG GAG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       237528 
 Total number of repeats detected..............       24 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AGC      2       0       2       0       0       0       0       0       0       0       0       0       0   
  ACA      3       2       1       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GCA      5       3       2       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      5       4       0       0       1       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    3 ACA +   2 CAA +   1 GTT +   0 TTG +    0 TGT      =    6 
   0 ATG +    0 TGA +   1 GAT +   1 CAT +   0 ATC +    1 TCA      =    3 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   1 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   2 AGC +    5 GCA +   5 CAG +   1 GCT +   0 CTG +    0 TGC      =   13 
   0 ACG +    0 CGA +   1 GAC +   0 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7303288|gb|AE003818.1|AE003818 Drosophila melanogaster genomic scaffold 142000013386047 section 28 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     2333  GCA *  8    22/24     GCA GCA GCA GCA GCA ACA GCA ACA
     2373  CAG * 19    52/57     CAG CAG CAG CAG CAG CAG CAA CAT CAG CAG CAG CAT CAG CAG CAG CAG CAA CAC CAG
     2724  CAG *  8    22/24     CAG CAG CAG CAG CAG CAG CAC AAG
    15521  TGC *  9    25/27     TGC TGC TGC TGC TGC TGC TTT TGC TGC
    17309  GCT *  7    20/21     GCT GCT GCT GCT GGT GCT GCT
    17342  GCT * 11    31/33     GCT GCT GCC GCT GCT GCT GCT GCT GCT GCT TCT
    36679  GTG *  8    22/24     GTG GTT GTG GTC GTG GTG GTG GTG
    42657  CAT *  7    19/21     CAT CAG CAT CAT TAT CAT CAT
    92864  TGC *  8    22/24     TGC TGC TGC TGC CGC TGC TGC TGA
   100847  ATT *  7    19/21     ATT ATT ATA GTT ATT ATT ATT
   119785  GTG *  7    19/21     GTG GCT GTG GTG GTG GTG GTG
   121275  TTC *  7    19/21     TTC TTC TTC TTC TTC TTC TGT
   124592  TGC * 11    30/33     TGC TGC TGC TGC TGC TGC TGC TGT TGC TGT TCC
   131385  CCT * 12    34/36     CCT CCT CCT ACT CCT CCT CCT CCT CCT CCT CCT CCC
   144568  CTG *  8    22/24     CTG ATG CTG CTG CTG CTG CTG TTG
   146100  CAA *  7    19/21     CAA GAA CAA CAA CAA CAA CAG
   193995  GCA *  7    19/21     GCA CCA GCA GCA TCA GCA GCA
   195526  CAG *  7    20/21     CAG CAG CAG CCG CAG CAG CAG
   195604  CAG *  8    22/24     CAG CAG CAA CAG CAG CAA CAG CAG
   220322  TGT *  7    20/21     TGT TGT TGT TGT TGT TGT TGC
   222843  TGC *  8    22/24     TGC TGC TGC TAC TGC TGC CGC TGC
   223052  ACA *  8    23/24     ACA ACA ACA ACT ACA ACA ACA ACA
   224069  GTG * 14    38/42     GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG TAG GTG GAC
   224704  CTG *  8    22/24     CTG ATG ATG CTG CTG CTG CTG CTG
   225050  ACC *  8    22/24     ACC ACC ACC ACC ACC ACC ATC CCC
   229522  AGC *  7    21/21     AGC AGC AGC AGC AGC AGC AGC
   233788  CGT * 12    33/36     CGT CCT CGT CGT CGT CGT CGT CGT CGT CAT GGT CGT
   235577  GCT *  8    22/24     GCT GCT GCT GCT GCA GCT TCT GCT
   251308  CGT * 10    27/30     CGT CGT CGT CGT CGT CGT CGT CAT CGT TGC
   255553  AGA *  7    19/21     AGA AGG AGA AGA AGA AGC AGA
   259359  TGC *  8    22/24     TGC TGC TCC TGC CGC TGC TGC TGC
   260867  GCA *  7    19/21     GCA GCC GCA GCA GCG GCA GCA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       264644 
 Total number of repeats detected..............       32 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      5       4       1       0       0       0       0       0       0       0       0       0       0   
  GTG      3       2       0       1       0       0       0       0       0       0       0       0       0   
  GCA      3       3       0       0       0       0       0       0       0       0       0       0       0   
  GCT      3       2       1       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      4       3       0       0       0       1       0       0       0       0       0       0       0   
  CTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CGT      2       0       2       0       0       0       0       0       0       0       0       0       0   
  CCT      1       0       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   1 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    1 AGA +   0 GAA +   0 CTT +   1 TTC +    0 TCT      =    2 
   0 AAC +    1 ACA +   1 CAA +   0 GTT +   0 TTG +    1 TGT      =    3 
   0 ATG +    0 TGA +   0 GAT +   1 CAT +   0 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   1 CCT +   0 CTC +    0 TCC      =    1 
   1 AGC +    3 GCA +   4 CAG +   3 GCT +   2 CTG +    5 TGC      =   18 
   0 ACG +    0 CGA +   0 GAC +   2 CGT +   0 GTC +    0 TCG      =    2 
   1 ACC +    0 CCA +   0 CAC +   0 GGT +   3 GTG +    0 TGG      =    4 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7303263|gb|AE003817.1|AE003817 Drosophila melanogaster genomic scaffold 142000013386047 section 27 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    31801  CAA *  8    23/24     CAA CAA CAA CAA CAA CAA CAG CAA
    32065  CAG * 11    30/33     CAG GAG CAG CAG CAG CAG CAG CAG CAA CAG CAA
    32103  GCA * 11    30/33     GCA GCA GCA GCA ACA ACA GCA GCA GCA GCA ACA
    44868  AGT * 10    28/30     AGT AGT AGT AGT AGT AGT AGT AGT AGT ATA
    47493  AAT *  7    20/21     AAT AAT AAA AAT AAT AAT AAT
    58208  TCA *  7    19/21     TCA TCA TCA TCA TCA GCA GCA
    58229  GCA *  7    19/21     GCA GCA GCA GCA GCA CCA TCA
    60277  TGA *  7    20/21     TGA TTA TGA TGA TGA TGA TGA
    63608  TGC *  9    25/27     TGC TGC TGC CGC TGC TGC TGT TGC TGC
    67291  GAT *  7    19/21     GAT GAT GGT GCT GAT GAT GAT
    87758  GTC *  7    19/21     GTC ATC GTC GTC GTT GTC GTC
   100728  TGG *  9    26/27     TGG TGG TGG TGG TGG TGG TGG TGG TGT
   119450  GCA *  7    19/21     GCA GCA CCA GCA GCA GCG GCA
   148684  TCC *  8    22/24     TCC TCC TCC TCC TCC GCC TCC TCG
   234263  TGT *  7    19/21     TGT TGT TAT TGT TGT TGT TGC
   234378  TGC * 13    36/39     TGC TGC TGC TGC TGC TGC TGC TGA TGC TGC TGC ATC TGC
   239582  TCA *  7    20/21     TCA TCA TCA TCA TAA TCA TCA
   245997  GTT *  8    22/24     GTT CTT GTT GTT GTT GTT GCT GTT
   249541  TAC *  8    22/24     TAC TAC TAC TAC TAC TAC CAC CAC
   252976  GGT *  7    19/21     GGT GGT GGT GGT GAT GGT GGC
   255669  GCT *  7    19/21     GCT GCT ACT GCT GCT GCT GTT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       262257 
 Total number of repeats detected..............       21 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       1       0       1       0       0       0       0       0       0       0       0       0   
  TCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      3       2       1       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       0       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   1 CAA +   1 GTT +   0 TTG +    1 TGT      =    3 
   0 ATG +    1 TGA +   1 GAT +   0 CAT +   0 ATC +    2 TCA      =    4 
   1 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    1 TAC      =    2 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    1 TCC      =    1 
   0 AGC +    3 GCA +   1 CAG +   1 GCT +   0 CTG +    2 TGC      =    7 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   1 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   1 GGT +   0 GTG +    1 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7303233|gb|AE003816.1|AE003816 Drosophila melanogaster genomic scaffold 142000013386047 section 26 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    15384  AGC *  7    19/21     AGC AGC AAC AAC AGC AGC AGC
    15440  CAG *  7    19/21     CAG CAG CAA CAG CAG CAG CAA
    25022  TAT *  7    19/21     TAT CAT TAT TAT TAC TAT TAT
    39050  CTT *  7    19/21     CTT GTT CTT GTT CTT CTT CTT
    49351  CAG *  7    20/21     CAG CAG CTG CAG CAG CAG CAG
    50518  CAG *  7    19/21     CAG CAG CAG CAG CAA CAG CAT
    53978  GCA * 12    33/36     GCA ACA GCA GCA GCA GCA GCA GCA GCA GCA ACA ACA
    54249  CAG * 11    30/33     CAG CAG CAA CAG CAG CAG CAG CAT CAG CAG CAA
    59336  TGC * 12    33/36     TGC TGC TGC TGC TGC TGC TGT TGC TGC TGC TGT TGG
    60831  TGC *  7    19/21     TGC GGC TGT TGC TGC TGC TGC
    60880  GCT *  7    19/21     GCT GTT GCT GCT GCT GTT GCT
    67261  CAA * 11    31/33     CAA CAA CAA CAA CAA CAA CAA CAA CAA CGA CAG
    76302  CTG *  8    22/24     CTG CTG CTG CTG CTG TTG CTG TTG
    76327  TGC * 14    39/42     TGC TGC TGC TGC TGC TGC TGC TGC TGC AGT TGC TGC TGC GGC
    76421  GCT *  7    19/21     GCT GCT GCT GCT GCT GTT GTT
    76453  TGC *  7    20/21     TGC TGC TGC TGC TGC TGT TGC
    76624  TGC *  8    22/24     TGC TGC TGC GGC TGC TGT TGC TGC
    76780  TGC *  8    22/24     TGC TGC TGT TGT TGC TGC TGC TGC
    77551  TGC *  8    22/24     TGC TGC TGC TGC TGG TGC TGT TGC
    85035  GCT * 11    31/33     GCT GCT GCT GCT GCT GCT GAT GCT GCT GCT GGT
    85162  GCA *  8    22/24     GCA GCG GCA GCA GCA GCA GCA ACA
    85336  GCT *  7    20/21     GCT GCT GCT GCT GCT GCT GTT
    86464  TGC * 10    27/30     TGC TGC TGC TGC TGC TGC TGC TGT TGC CGT
    89680  ACA *  8    22/24     ACA GCA GCA ACA ACA ACA ACA ACA
    91283  ACA * 10    27/30     ACA ACG GCA ACA ACA ACA ACA ACA ACA AAA
    98026  CGG *  8    22/24     CGG CGG CGG CGG CGG CGG CGG CAA
   103223  CAA *  8    22/24     CAA CAA CAA CAA CAA TAA CAA CAG
   105639  TGC * 10    27/30     TGC TGG TGC TGC TGA TGC TGC TGC TGC TGT
   105672  TGC *  8    23/24     TGC TGC TGC TGC TGA TGC TGC TGC
   106029  TGC *  7    19/21     TGC TGC TGC TGC TGT TGT TGC
   106122  TGC *  7    19/21     TGC AGC TGC TGT TGC TGC TGC
   106191  TGC * 11    31/33     TGC TGC TGC TGC TGC TGC TGT TGC TGC TGC TGG
   106459  GCT * 11    30/33     GCT GCT GCT GCT GCT GCT GCT GCT GCT GTT TCC
   111856  CAG * 14    38/42     CAG CAG CAG CAG CAG CAG CAG CAG CAG CAA CAG CAG CAA CTT
   115768  GTT *  9    25/27     GTT GTT ATT GTT GTT GTT GCT GTT GTT
   115843  TGT *  8    22/24     TGT TGT TGT TGT TGT TGT TGC TGC
   116017  GCA * 10    27/30     GCA GCA GCA ACA ACA GCA GCA GCA GCA TCA
   117164  TAA *  7    20/21     TAA TAA TAA TAA TAA TAA AAA
   120994  CTG * 10    27/30     CTG TTG TTG CTG CTG CTG CTG CTG CTG CGG
   135926  AGC *  7    19/21     AGC AGC AGC AGC ATC GGC AGC
   152084  TGG * 10    27/30     TGG TGG TGG TGG TGG TGA TGG TGG TGG TCC
   157420  GCA *  7    20/21     GCA GCA GCC GCA GCA GCA GCA
   160865  CAG *  8    22/24     CAG CAG CCG CTG CAG CAG CAG CAG
   163215  AAT *  8    23/24     AAT AAT AAT AAT AAT AAT AAT CAT
   163500  CAA *  8    22/24     CAA CAA CAA ATA CAA CAA CAA CAA
   175333  AGA *  7    19/21     AGA AGA AGA AGA AGA GGA TGA
   191787  GTT *  7    19/21     GTT CTT GTT ATT GTT GTT GTT
   194998  CAT *  7    19/21     CAT CAT CAT CAT CAT CAT CGC
   247151  AAT *  7    20/21     AAT AAT AAT AAT AAT AAT ATT
   251711  TAC *  7    20/21     TAC TAC TAC TAC TAA TAC TAC
   252744  CTC *  8    22/24     CTC CTC CTC CTC CTC CTC CTT CTA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       260779 
 Total number of repeats detected..............       51 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  AGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  ACA      2       1       1       0       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGC     13       8       4       1       0       0       0       0       0       0       0       0       0   
  GTT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCA      4       2       2       0       0       0       0       0       0       0       0       0       0   
  GCT      5       3       2       0       0       0       0       0       0       0       0       0       0   
  CAA      3       2       1       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      6       4       1       1       0       0       0       0       0       0       0       0       0   
  CTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   2 AAT +    0 ATA +   1 TAA +   0 ATT +   0 TTA +    1 TAT      =    4 
   0 AAG +    1 AGA +   0 GAA +   1 CTT +   0 TTC +    0 TCT      =    2 
   0 AAC +    2 ACA +   3 CAA +   2 GTT +   0 TTG +    1 TGT      =    8 
   0 ATG +    0 TGA +   0 GAT +   1 CAT +   0 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    1 TAC      =    1 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   1 CTC +    0 TCC      =    1 
   2 AGC +    4 GCA +   6 CAG +   5 GCT +   2 CTG +   13 TGC      =   32 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    1 TGG      =    1 
   0 GGC +    0 GCG +   1 CGG +   0 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7303189|gb|AE003815.1|AE003815 Drosophila melanogaster genomic scaffold 142000013386047 section 25 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    10073  ACG *  7    19/21     ACG ACG AGG ACG ACG ACG ACA
    15876  CTC *  8    23/24     CTC CTC CTG CTC CTC CTC CTC CTC
    19040  TGC *  7    19/21     TGC CGC TGC TGC TGC TGC TGG
    19212  TGC * 11    31/33     TGC TGC TGC TGT TGC TGC TGC TGC TGC TGC AGC
    19588  CAG *  7    19/21     CAG ACG CAG CAG CAG CAG CAG
    19906  CTG * 12    33/36     CTG TTG CTG CTG TTG CTG CTG CTG CTG CTG CTA CTG
    23032  ATG *  8    22/24     ATG ATG ATG ATG ATG ATG ATG GTC
    23218  ATA *  8    22/24     ATA ACA ATA ATA ATA ATA ATA ACA
    38234  CTG *  8    24/24     CTG CTG CTG CTG CTG CTG CTG CTG
    39164  TGT *  8    22/24     TGT TGT TGT TGT TGT TGT TGG TGG
    47127  TGC *  7    19/21     TGC TGC TGT AGC TGC TGC TGC
    47151  TGC * 10    27/30     TGC TGC TGC TGC TGT TGC TGT TGC TGC TGT
    55702  GAC *  7    19/21     GAC GAC GAC GAC GAC GAC AAT
    80308  TGC *  9    25/27     TGC TGC TGC TGC TGT TGC TGT TGC TGC
    80476  TGC *  7    19/21     TGC CGC TGC TGT TGC TGC TGC
    85882  CAA *  7    19/21     CAA CAA CAT CAA CAA CAA TAA
    89440  TGG *  7    20/21     TGG TAG TGG TGG TGG TGG TGG
    90025  GCT *  7    19/21     GCT GCT GCT GCT GCG ACT GCT
    90047  CTG *  9    25/27     CTG CTG CTG CGA CTG CTG CTG CTG CTG
   115936  CTT *  7    19/21     CTT CTT CTT TTT CTT TTT CTT
   140351  CCA *  7    19/21     CCA CGA CCA CCT CCA CCA CCA
   145320  GCT *  7    20/21     GCT GCT GCT GCT GCT GCT GCG
   146386  CAG *  8    22/24     CAG CCG CAG TAG CAG CAG CAG CAG
   146743  TGA *  7    19/21     TGA TGA TGA TGA TGA TGA AGG
   153607  GCT *  7    19/21     GCT GCT GCT GCT GCC GCT GCC
   154730  CAA *  8    23/24     CAA CAA CAA CAA CAA CAA CAC CAA
   154790  AAC *  8    22/24     AAC AAC AGC AAC AAC TAC AAC AAC
   157913  GAT *  7    19/21     GAT GGT GAT GAT GAT GAT GAC
   177734  TGC *  7    19/21     TGC TTG TGC TGC TGC TGC TGC
   184628  TGC *  7    19/21     TGC TGC TGC TGT TGC TGC TGT
   222602  CAA *  7    19/21     CAA CAA CAA CAA CAG CAA CAG
   237724  TGC *  8    22/24     TGC TGC TGC GGC TGC TGC TGC TGA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       240495 
 Total number of repeats detected..............       32 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      9       7       2       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      3       3       0       0       0       0       0       0       0       0       0       0       0   
  CAA      3       3       0       0       0       0       0       0       0       0       0       0       0   
  CAG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      3       2       1       0       0       0       0       0       0       0       0       0       0   
  CTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    1 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   1 CTT +   0 TTC +    0 TCT      =    1 
   1 AAC +    0 ACA +   3 CAA +   0 GTT +   0 TTG +    1 TGT      =    5 
   1 ATG +    1 TGA +   1 GAT +   0 CAT +   0 ATC +    0 TCA      =    3 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   1 CTC +    0 TCC      =    1 
   0 AGC +    0 GCA +   2 CAG +   3 GCT +   3 CTG +    9 TGC      =   17 
   1 ACG +    0 CGA +   1 GAC +   0 CGT +   0 GTC +    0 TCG      =    2 
   0 ACC +    1 CCA +   0 CAC +   0 GGT +   0 GTG +    1 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7303162|gb|AE003814.1|AE003814 Drosophila melanogaster genomic scaffold 142000013386047 section 24 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    77028  ATA *  8    22/24     ATA ATA ATA ATA ATA ATA ATA TAA
    79559  CAT *  8    22/24     CAT CAT CAT CAT CAT CAC CAT TAT
   111445  CTG *  8    22/24     CTG CTG CTG TTG CTG CTG CTC CTG
   115720  CCA *  7    19/21     CCA CCA TCA CCT CCA CCA CCA
   117406  GTT *  8    22/24     GTT GTT GTT TGT GTT GTT GTT GTT
   121423  TAG * 11    30/33     TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG ATA
   125590  GCT *  8    22/24     GCT GCT GAT GTT GCT GCT GCT GCT
   127111  TGC *  8    22/24     TGC TGC TGC TGC TGC TGA TGT TGC
   127225  TGC *  8    22/24     TGC TGT TGC TGC TGC TGC TGT TGC
   130235  TGC * 10    27/30     TGC TGC GGC CGC TGC TGC TGC TGC TGC CGC
   140092  CTG *  7    20/21     CTG CTG CTG CTG CTG CTG TTG
   143194  GTC *  8    22/24     GTC GTC GTC GTT CTC GTC GTC GTC
   165068  ACG *  7    19/21     ACG ATG ACG ACT ACG ACG ACG
   166609  TGA *  7    19/21     TGA TGA TGG TAA TGA TGA TGA
   179598  TCA * 10    28/30     TCA TCA TCA TCA TCA TCA TCA CCA TCG TCA
   180014  AAC *  8    22/24     AAC AAC AAC AAC AAC AAC GGC AAC
   180458  CAA *  7    20/21     CAA CAA CAA CAG CAA CAA CAA
   184363  CTT *  7    20/21     CTT CTT CTG CTT CTT CTT CTT
   188178  TGC *  8    23/24     TGC TGC TCC TGC TGC TGC TGC TGC
   189499  TGC *  8    22/24     TGC TGC CGC TGC TGC GGC TGC TGC
   195913  CTG *  8    22/24     CTG CTG CTG CTG CTG CTG CTT CTT
   197663  GTG *  7    19/21     GTG GTA GTG GTG GTG GTA GTG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       260713 
 Total number of repeats detected..............       22 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      5       4       1       0       0       0       0       0       0       0       0       0       0   
  TCA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      3       3       0       0       0       0       0       0       0       0       0       0       0   
  CCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    1 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   1 CTT +   0 TTC +    0 TCT      =    1 
   1 AAC +    0 ACA +   1 CAA +   1 GTT +   0 TTG +    0 TGT      =    3 
   0 ATG +    1 TGA +   0 GAT +   1 CAT +   0 ATC +    1 TCA      =    3 
   0 AGT +    0 GTA +   1 TAG +   0 ACT +   0 CTA +    0 TAC      =    1 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    0 GCA +   0 CAG +   1 GCT +   3 CTG +    5 TGC      =    9 
   1 ACG +    0 CGA +   0 GAC +   0 CGT +   1 GTC +    0 TCG      =    2 
   0 ACC +    1 CCA +   0 CAC +   0 GGT +   1 GTG +    0 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7303119|gb|AE003813.1|AE003813 Drosophila melanogaster genomic scaffold 142000013386047 section 23 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    29724  AAT *  7    19/21     AAT AAT AAT AAT AAT AAC AAC
    31711  CGA *  7    19/21     CGA CGA CGA CGA TGA GGA CGA
   107486  TGT *  7    19/21     TGT TGT TGT TGT TGT TGC TGG
   110602  AGG * 10    27/30     AGG AGG AGG AGG GGG AGG AGG AGG CGG TGG
   163116  TGC *  9    25/27     TGC TGC TGC TGC TGC TGC TGC TGT TGA
   179852  CAA * 13    36/39     CAA CAA GAG CAA CAA CAA CAA CAA CAA CAA CAA CAA TAA
   190403  GCT *  8    22/24     GCT TCT ACT GCT GCT GCT GCT GCT
   199510  CTG *  8    22/24     CTG CCG CTG CTG TTG CTG CTG CTG
   234939  ACA *  8    23/24     ACA ACA ACA ACA GCA ACA ACA ACA
   254179  TGA *  8    23/24     TGA TGA TGA TGA TGA TGA TGA TGT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       258778 
 Total number of repeats detected..............       10 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       0       0       1       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    1 ACA +   1 CAA +   0 GTT +   0 TTG +    1 TGT      =    3 
   0 ATG +    1 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   1 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   0 AGC +    0 GCA +   0 CAG +   1 GCT +   1 CTG +    1 TGC      =    3 
   0 ACG +    1 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7303102|gb|AE003812.1|AE003812 Drosophila melanogaster genomic scaffold 142000013386047 section 22 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     9812  GTT *  8    22/24     GTT GTT GTT GTT GCT ATT GTT GTT
     9886  GCT *  7    19/21     GCT GCT GCT GCT GCT GCT GGC
    13350  GCT *  7    19/21     GCT GTT GTT GCT GCT GCT GCT
    15077  ATC *  8    22/24     ATC ATC ATC ATC ATC ATC CAC ATC
    15854  TTG *  8    22/24     TTG TTG TTG TTG TTG TTG CTG CTG
    16781  ACA *  7    20/21     ACA ACA ACA ACA ACA GCA ACA
    19063  GCT *  8    22/24     GCT GCT TCT GCT TCT GCT GCT GCT
    19956  AGG *  8    22/24     AGG AGG AGG AGG AGT AGA AGG AGG
    20863  TGG * 10    27/30     TGG TGG CGG TGT TGG TGG TGG TGG TGG TGC
    32627  GAT *  7    19/21     GAT GAT GAT GAT GGT GGT GAT
    44706  AAC *  8    22/24     AAC AGC AAC AAC AGC AAC AAC AAC
   104335  TGC *  7    20/21     TGC TGC TGC TGC TGT TGC TGC
   107906  CAG *  7    19/21     CAG CAG CAG CAG CAG CAA CAA
   119041  GTT * 11    30/33     GTT GTT GTT GTC GTT GTT GTT GGT GTT GTC GTT
   128916  ATA * 18    50/54     ATA ATA ACA ATA ATA ATA ACA ATA ATA ATA ATA ATA TTA ATA ATA ATT ATA ATA
   129339  ATA * 18    50/54     ATA ATA ACA ATA ATA ATA ACA ATA ATA ATA ATA ATA TTA ATA ATA ATT ATA ATA
   136310  AAT * 15    41/45     AAT AAT AAT ACC AAT AAT AAT AAT AAT ATT AAT AAT AAT TAT AAT
   143121  GTT *  7    19/21     GTT GCT GTT GCT GTT GTT GTT
   145032  CAA * 10    27/30     CAA CAA CAG CAA CAA GAA CAA CAA CAA CAC
   156170  CAA *  8    22/24     CAA CAA CAC CAA CAT CAA CAA CAA
   157080  TAG *  8    22/24     TAG TAG TAG TAG TAG TAG TGG CAG
   167563  ATG *  7    19/21     ATG ATA ATG ATG ATG ATG ATA
   173192  CTG *  7    19/21     CTG CTG CTG CTG CTG CTG CCA
   180324  GGT *  7    19/21     GGT GTT GAT GGT GGT GGT GGT
   184596  GTT *  7    19/21     GTT GTC GCT GTT GTT GTT GTT
   198824  AGG *  7    19/21     AGG AGG AGG AGG AGG AGC AGC
   198855  GCA *  7    19/21     GCA ACA GCA GCA GCA TCA GCA
   206002  CAG * 10    27/30     CAG CAG CAG CAG CAG CAG CAA CAT CAG CAT
   225653  ACA *  8    22/24     ACA AAA ACA ACA ACA ACA ACA AAA
   225769  CAG *  7    19/21     CAG CAA CTG CAG CAG CAG CAG
   239131  GAT *  7    19/21     GAT CAT GAT AAT GAT GAT GAT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       257946 
 Total number of repeats detected..............       31 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       0       0       1       0       0       0       0       0       0       0       0       0   
  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATA      2       0       0       0       2       0       0       0       0       0       0       0       0   
  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  ACA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GTT      4       3       1       0       0       0       0       0       0       0       0       0       0   
  GGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      3       3       0       0       0       0       0       0       0       0       0       0       0   
  CAA      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CAG      3       2       1       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    2 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    3 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    2 ACA +   2 CAA +   4 GTT +   1 TTG +    0 TGT      =   10 
   1 ATG +    0 TGA +   2 GAT +   0 CAT +   1 ATC +    0 TCA      =    4 
   0 AGT +    0 GTA +   1 TAG +   0 ACT +   0 CTA +    0 TAC      =    1 
   2 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    2 
   0 AGC +    1 GCA +   3 CAG +   3 GCT +   1 CTG +    1 TGC      =    9 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   1 GGT +   0 GTG +    1 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7303071|gb|AE003811.1|AE003811 Drosophila melanogaster genomic scaffold 142000013386047 section 21 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     2401  TGC *  7    19/21     TGC TGC TGC TGC TAC TGC TGG
    28052  TTC *  7    19/21     TTC TTC TTT TTC TTC TTC TTT
    60733  TTA *  7    19/21     TTA TTA TTA TTA TTA TAA TTG
   113492  CTG *  9    25/27     CTG CTG ATG CTG CTG CTG CTG CTG CTC
   172311  GCT *  8    23/24     GCT GCT GCT GCT GCT TCT GCT GCT
   176446  GCA *  7    19/21     GCA GCA GCA GCA GAA GGA GCA
   177930  CAG *  8    22/24     CAG CAG CAG CAG GAG CAG CAG CAA
   178280  AGC * 10    27/30     AGC AGC AGC AGC AGC ATC AGC ATC AGC ATC
   180193  GCT *  8    22/24     GCT ACT GTT GCT GCT GCT GCT GCT
   237599  TTG *  7    19/21     TTG TTA TTG CTG TTG TTG TTG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       259379 
 Total number of repeats detected..............       10 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AGC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   1 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   1 TTC +    0 TCT      =    1 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   1 TTG +    0 TGT      =    1 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   1 AGC +    1 GCA +   1 CAG +   2 GCT +   1 CTG +    1 TGC      =    7 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7303048|gb|AE003810.1|AE003810 Drosophila melanogaster genomic scaffold 142000013386047 section 20 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     8705  CAG *  8    22/24     CAG CAG CAG CAA CAA CAG CAG CAG
    18492  GCT * 12    33/36     GCT GCT GCT GCT GCT GTT GTT GCT GCT GCT GCT ACT
    18531  GCT *  9    25/27     GCT GCT GCT GCT GCT GCT GTT GCT GTT
    42256  CAG *  8    23/24     CAG CAG CAG CAG CAG CAG CAG CAA
    49220  CAG * 10    27/30     CAG CAG CAG CAG CAG CAG CAA CGG CAG AAG
    50873  GCA * 14    38/42     GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GTG GCA GCC GCG
    51532  AGC *  8    22/24     AGC ACC AGC AGC AAC AGC AGC AGC
    51650  CAG *  9    25/27     CAG CAG CGG CAG CAG CAG CAT CAG CAG
    72115  TTG *  7    19/21     TTG CTG TTG TTG TTG TTG CTG
    72152  TTG *  7    19/21     TTG ATG TTT TTG TTG TTG TTG
    73091  GAT * 15    41/45     GAT GTT GAT GTT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GCA
    78934  AGC *  8    22/24     AGC AGC AGC AGC GGC AGC AGC AGA
    80880  CCT *  7    20/21     CCT CCT CCT CCT CCT CCT CCA
    81037  CTG *  7    19/21     CTG CTG CCG CTG CTG CTG TTG
    93922  CCT *  8    23/24     CCT CCT CCT CCT TCT CCT CCT CCT
   120497  TGC *  8    22/24     TGC TGC TGA TGC TGA TGC TGC TGC
   125463  GCA *  7    19/21     GCA GCA GCC GCA GCA GCA GCG
   181947  AAG *  8    23/24     AAG AAG AAG AAG AAG AAG GAG AAG
   182061  GAG *  8    22/24     GAG GAG GAA GAA GAG GAG GAG GAG
   182679  CAG *  7    19/21     CAG CAG CAG CAC CAG CAG CAA
   182706  CAG *  8    22/24     CAG CAG CAG CAT CAA CAG CAG CAG
   187584  CTC *  7    19/21     CTC TTC CTC CTC CTC CTC CTT
   191407  GCA * 11    30/33     GCA ACA GCA GCA GCA GCA GAA GCA GCA GCA ACA
   191582  AGC *  8    22/24     AGC AGC GGC AGC AGC AGC AAC AGC
   196082  AGC *  7    19/21     AGC AGC AGC AAC AGC AAC AGC
   198465  GCA *  7    19/21     GCA GCA GCA ACA GCC GCA GCA
   201586  GAC *  8    22/24     GAC GAC GAC GAC GAC GAA GAC GGC
   209772  TGT *  8    23/24     TGT TGT TGT TGT TGT TGT TGT GGT
   212057  GCT *  7    19/21     GCT GCT GCT GCT GAT GTT GCT
   212080  TGC * 11    31/33     TGC TGC TGC TGC TGT TGC TGC TGC TGC TCC TGC
   213637  ATC * 10    27/30     ATC ATC ATC ATC ATC ATC ATC GTC GTC GTC
   229756  CCT *  7    19/21     CCT CCT CCT CCT GCA CCT CCT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       258873 
 Total number of repeats detected..............       32 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  AGC      4       4       0       0       0       0       0       0       0       0       0       0       0   
  TTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GAT      1       0       0       1       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      4       2       1       1       0       0       0       0       0       0       0       0       0   
  GCT      3       2       1       0       0       0       0       0       0       0       0       0       0   
  CAG      6       5       1       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCT      3       3       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   1 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    1 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   2 TTG +    1 TGT      =    3 
   0 ATG +    0 TGA +   1 GAT +   0 CAT +   1 ATC +    0 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   1 GAG +   3 CCT +   1 CTC +    0 TCC      =    5 
   4 AGC +    4 GCA +   6 CAG +   3 GCT +   1 CTG +    2 TGC      =   20 
   0 ACG +    0 CGA +   1 GAC +   0 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7303026|gb|AE003809.1|AE003809 Drosophila melanogaster genomic scaffold 142000013386047 section 19 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     5905  CAG *  7    19/21     CAG CAG CAG CAG CGG AAG CAG
    18236  TGG *  9    25/27     TGG TGG TGG TGG TGG TGG TGG TGG TTC
    20282  TCA *  7    19/21     TCA TCG TCG TCA TCA TCA TCA
    21427  CCA *  7    19/21     CCA CCA CCA TCA CCA CCA GCA
    26043  TTG *  7    19/21     TTG ATG TTG ATG TTG TTG TTG
    26651  AAC *  7    20/21     AAC AAC AAC AGC AAC AAC AAC
    28524  TGC * 11    30/33     TGC TGT TGC TGC TGC TGC TGC TGC TGC TGT TGT
    30038  CAT *  7    19/21     CAT CAG CAT CAT CAT CAG CAT
    36764  TTA *  7    19/21     TTA TTA TTA TTA TTA TTT TTT
    95778  CTC * 10    27/30     CTC CTC CTA CTC CTC CTC CTC CTC CTC TCC
   100811  AGC *  9    25/27     AGC AGC AGC AGC AGC ATC AGC AGC AAC
   104992  GGA *  7    19/21     GGA GGA GGA GCA AGA GGA GGA
   106609  GAT *  7    20/21     GAT GAT GAT GAT GAC GAT GAT
   124669  CAG * 18    49/54     CAG CAG AAG CAG CAG CAG CAG AAG CAG CAG CAG CAG CAA CAG CAG GAG CAG CAA
   125382  GCA *  7    19/21     GCA GCA GCA GCA GCA TCA TCA
   140642  TGA * 10    27/30     TGA TGA TGA TGA TGA TGA TGA TGC TGA TTC
   156673  CAG *  8    22/24     CAG CAG CCG CAG CAG CAG CAG AAG
   166323  GCA *  8    23/24     GCA GCA GCA GCA GCA ACA GCA GCA
   174753  TGA *  7    19/21     TGA TGA TGA CAA TGA TGA TGA
   188187  TGC * 15    41/45     TGC TGC TGC TGC CGC TGC CGC TGC TGC TGC TGC TGC TGC TGT TTC
   190891  GCT *  7    19/21     GCT GCT GCT GGT GGT GCT GCT
   195482  CTG * 11    30/33     CTG TTG CTG CTG CTG CTG CTG CTG GTG TTG CTG
   195838  TGC * 11    30/33     TGC TGA TGC AGC TGC TGC TGC TGC TGC TGC TGT
   196001  GTT * 11    32/33     GTT GTT ATT GTT GTT GTT GTT GTT GTT GTT GTT
   196206  CTG *  8    22/24     CTG CTG CTG CTG CTG CTG TTG TTG
   196231  TGC *  7    19/21     TGC TGC TGC TGT TGC TGT TGC
   196483  TGC *  8    22/24     TGC TGC TGC TGC TGC TGC TGT TGT
   196622  GCT *  8    23/24     GCT GCT GGT GCT GCT GCT GCT GCT
   196759  CTG * 11    30/33     CTG CTG CCG CTG CTG CAG CTG CTG CTG CTG ATG
   223602  ATT *  8    22/24     ATT ATC ATT ATT ATT ATT ATT ATC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       260968 
 Total number of repeats detected..............       30 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGA      2       1       1       0       0       0       0       0       0       0       0       0       0   
  TGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      5       2       2       1       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      3       2       0       0       1       0       0       0       0       0       0       0       0   
  CTG      3       1       2       0       0       0       0       0       0       0       0       0       0   
  CTC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   1 ATT +   1 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    0 ACA +   0 CAA +   1 GTT +   1 TTG +    0 TGT      =    3 
   0 ATG +    2 TGA +   1 GAT +   1 CAT +   0 ATC +    1 TCA      =    5 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    1 GGA +   0 GAG +   0 CCT +   1 CTC +    0 TCC      =    2 
   1 AGC +    2 GCA +   3 CAG +   2 GCT +   3 CTG +    5 TGC      =   16 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    1 CCA +   0 CAC +   0 GGT +   0 GTG +    1 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7302975|gb|AE003808.1|AE003808 Drosophila melanogaster genomic scaffold 142000013386047 section 18 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    28073  CCT *  8    22/24     CCT CCT CAA CCT CCT CCT CCT CCT
    32300  TGT *  8    22/24     TGT TGT TGT TGT TAT TGT TGT TGC
    36542  AAC *  7    19/21     AAC AAG AAC AAC AAC AAA AAC
    37386  TTA *  7    19/21     TTA TTG TTA TTA TTA TTA TTT
    40725  AAC *  7    19/21     AAC AAC AGC AAC AAC AAC AAA
    40891  CAA *  8    23/24     CAA CAA CAA CAG CAA CAA CAA CAA
    42614  GAC *  8    22/24     GAC GAC GAC GAC GAC GAC GAC GTT
    43814  CTC * 10    27/30     CTC CGC CTC CTT CTC CTC CTC CTC CTC CCC
    63560  TGC *  8    22/24     TGC TTC TGC TTC TGC TGC TGC TGC
    71063  GGT *  7    19/21     GGT GGT GGT GAT GGT GGT GGG
    84328  TCC *  8    23/24     TCC TCC TCC TCT TCC TCC TCC TCC
    90500  GTT *  7    19/21     GTT GTT CTT GAT GTT GTT GTT
   101326  GCA *  8    22/24     GCA GCA GCA GCA GCA GCA ACA ACA
   101740  CCA * 11    30/33     CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA TTC
   105536  CTC * 11    30/33     CTC CTC CAG CTC CTC CTC CTC CTC CTC CTC CTT
   109556  CAT *  7    19/21     CAT CAT CCT CAT CAT CTT CAT
   109637  CAT *  8    22/24     CAT CAT CAT TCT CAT CAT CAT CAT
   109661  CAA *  7    19/21     CAA CAA CAA CAA CAA GCA CAA
   109715  CAA * 11    30/33     CAA CAG CAA CAA CAA CTA CAA CAA CAA CAA CAC
   110520  CAG * 15    41/45     CAG CAG CAG CAG CAG CAG CAA CAG CAG CAG CAG CAA CCG CAA CAG
   114950  CAA *  8    22/24     CAA CAA CAA CAA CAA CAG CAA CAG
   132844  TAT *  7    19/21     TAT TAT TAT TAT TAT TAT ATT
   137844  CTG * 10    27/30     CTG CTG CTG CTC CTG TTG CTG CTG CTG TTG
   138157  CTG * 11    31/33     CTG CCT CTG CTG CTG CTG CTG CTG CTG CTG CTG
   140061  GCT *  8    22/24     GCT GCA GCA GCT GCT GCT GCT GCT
   142312  CTC *  8    22/24     CTC CTC CTC CTC ATC CTC ATC CTC
   153127  GTG *  7    19/21     GTG GTG GTG GTT GAG GTG GTG
   155904  TGC *  7    19/21     TGC TGT TGC TGC TGC TGC TGA
   207552  GCT *  7    19/21     GCT ACT GCT GCT GCT GCT GAT
   245412  CTG *  7    19/21     CTG CTC CTG CTG CTT CTG CTG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       262173 
 Total number of repeats detected..............       30 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAA      4       3       1       0       0       0       0       0       0       0       0       0       0   
  CAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       0       0       1       0       0       0       0       0       0       0       0       0   
  CTG      3       1       2       0       0       0       0       0       0       0       0       0       0   
  CTC      3       1       2       0       0       0       0       0       0       0       0       0       0   
  CCA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   1 TTA +    1 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   2 AAC +    0 ACA +   4 CAA +   1 GTT +   0 TTG +    1 TGT      =    8 
   0 ATG +    0 TGA +   0 GAT +   2 CAT +   0 ATC +    0 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   1 CCT +   3 CTC +    1 TCC      =    5 
   0 AGC +    1 GCA +   1 CAG +   2 GCT +   3 CTG +    2 TGC      =    9 
   0 ACG +    0 CGA +   1 GAC +   0 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    1 CCA +   0 CAC +   1 GGT +   1 GTG +    0 TGG      =    3 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7302923|gb|AE003807.1|AE003807 Drosophila melanogaster genomic scaffold 142000013386047 section 17 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     7858  ATC * 13    36/39     ATC GAC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AGC
    68186  TGC *  7    20/21     TGC TGC TGC TGC TGC TGC TGT
    94551  TGC * 10    27/30     TGC TCC TGT TGC TGC TGC TGC TGC TGC CGC
   101339  AGC *  8    22/24     AGC AAC AGC AGC AGC AGC AGC AAC
   105438  AAC *  8    22/24     AAC AAC AAC AAC AAC AAC AAC GCC
   119845  GGA * 10    28/30     GGA GGT GGA GGA GGA GGA GGA GGA GGA GGT
   126780  ACC *  8    22/24     ACC ATC ACC ACC ACC ATC ACC ACC
   127799  CAC *  7    19/21     CAC CAC CTC CAC AAC CAC CAC
   201341  CTC * 11    31/33     CTC CTC CTC CTC CTC CTC TTC ATC CTC CTC CTC
   202450  AGG *  7    19/21     AGG ATG AGG ACG AGG AGG AGG
   202471  ACG *  7    19/21     ACG ACG ACG ACG TCG ACG AGG
   246474  AAC *  8    22/24     AAC GAC AAC AAC AAC AAC AAC ATC
   251181  AGC *  7    20/21     AGC AGC AGC AGC AAC AGC AGC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       260067 
 Total number of repeats detected..............       13 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  ATC      1       0       0       1       0       0       0       0       0       0       0       0       0   
  AGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  ACG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GGA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTC      1       0       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   2 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    2 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   1 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   1 AGG +    1 GGA +   0 GAG +   0 CCT +   1 CTC +    0 TCC      =    3 
   2 AGC +    0 GCA +   0 CAG +   0 GCT +   0 CTG +    2 TGC      =    4 
   1 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    1 
   1 ACC +    0 CCA +   1 CAC +   0 GGT +   0 GTG +    0 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7302890|gb|AE003806.1|AE003806 Drosophila melanogaster genomic scaffold 142000013386047 section 16 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     8347  GAT * 10    28/30     GAT GGT GAT GAT GAT GAT GAT GAC GAT GAT
    30714  GCA *  8    22/24     GCA GCA TCA GCA TCA GCA GCA GCA
    51342  GCA *  8    23/24     GCA GCA GCA GCA GCA GCA GCA TCA
    85490  GCA *  7    19/21     GCA GCA GCA GCA GTC GCA GCA
    88626  TGT *  8    22/24     TGT AGT TGT TGT TGT TGT TGT TGC
   109280  CTC *  8    22/24     CTC ACC CTC CTC CTC CTC CTC CTC
   136642  CAA *  7    19/21     CAA CAA AAA CAA CAA CAG CAA
   159130  CAG *  7    19/21     CAG CAG CAG AAA CAG CAG CAG
   173000  AGC *  7    19/21     AGC AGC AGA AGC AGC AGC AGG
   197062  TGC *  8    22/24     TGC TGC TAC TGC TGC TGC TTC TGC
   206733  TTG *  8    22/24     TTG CTG TTG TTG TTG TTG TTG TTT
   241565  TGC * 10    28/30     TGC TGC TGA TGC GGC TGC TGC TGC TGC TGC
   247423  CTG * 14    38/42     CTG CTG CCG CTG CTG CTG CTG CTG TTG CTG CTG TTG CTG TTG
   264085  CTG *  8    22/24     CTG CTT CTG CTG CTG TTG CTG CTG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       268219 
 Total number of repeats detected..............       14 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GAT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GCA      3       3       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      2       1       0       1       0       0       0       0       0       0       0       0       0   
  CTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   1 CAA +   0 GTT +   1 TTG +    1 TGT      =    3 
   0 ATG +    0 TGA +   1 GAT +   0 CAT +   0 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   1 CTC +    0 TCC      =    1 
   1 AGC +    3 GCA +   1 CAG +   0 GCT +   2 CTG +    2 TGC      =    9 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7302851|gb|AE003805.1|AE003805 Drosophila melanogaster genomic scaffold 142000013386047 section 15 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     8035  GGC *  7    20/21     GGC AGC GGC GGC GGC GGC GGC
    11737  GGC *  7    19/21     GGC GGC GGC GGC GGC GGC AGA
    19215  AAT *  7    20/21     AAT AAT AAT AAT AAT AAT AAA
    31466  TCA *  9    25/27     TCA TCA TCA TCA TCT TCA TCA TCA TAA
    61632  ATC *  7    19/21     ATC ATC ATC ATC ATC CTC CTC
    69650  TGT *  8    22/24     TGT TGT TGT TGG TGT TGT TGT TGC
   129664  GGC *  7    19/21     GGC GGC GGC GGA GGT GGC GGC
   137224  CAC *  8    22/24     CAC CAG CAC CAC CAC CAC GAC CAC
   168245  CAG *  7    19/21     CAG CAG CAG CAG CAG CAG GAA
   175475  GAC *  8    22/24     GAC GAC TGC GAC GAC GAC GAC GAC
   204422  TGT *  9    25/27     TGT TGT TGT TGT TGT TGT TGT GAT TGT
   215798  GCT * 11    30/33     GCT GCT GCT GCT GCT GTT GCT GCT GAT GCA GCT
   262738  CTG * 11    30/33     CTG CTG CTG CTG TTG TTG CTG CTG CTG CTG CCG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       270307 
 Total number of repeats detected..............       13 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGC      3       3       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       0       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    2 TGT      =    2 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   1 ATC +    1 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    0 GCA +   1 CAG +   1 GCT +   1 CTG +    0 TGC      =    3 
   0 ACG +    0 CGA +   1 GAC +   0 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   1 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   3 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    3 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7302807|gb|AE003804.1|AE003804 Drosophila melanogaster genomic scaffold 142000013386047 section 14 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     4556  ATC *  9    25/27     ATC ATC ATC ATC ATC ATC GTT ATC ATC
    12396  TGT *  7    19/21     TGT TGT TGT TGC TGT TGT TGC
    30457  GCA *  7    19/21     GCA GCA GCA GCA GGA TCA GCA
    30568  GCA *  7    19/21     GCA GCA GCA GCA ACG GCA GCA
    97354  CCA *  8    22/24     CCA CCG CCA CCA CCA CCC CCA CCA
    97432  CCA *  9    25/27     CCA CCC CCA CCA CCA CCA CCA CCA CCG
   113627  GAT *  7    20/21     GAT GAT GAT GAT GAT GAT GCT
   123580  CAT *  7    19/21     CAT CAT CAT AAT CAT CAT CAA
   172203  GAT *  7    19/21     GAT GAT GAT GAA GAT GAT AAT
   180075  GCA * 10    27/30     GCA GCA ACA GCA ACA GCA GCA GCA GCA GCT
   180223  GCA *  7    19/21     GCA GCA TCT GCA GCA GCA GCA
   188744  AGC *  8    22/24     AGC AGC AGC AGA TGC AGC AGC AGC
   199528  TAT *  9    25/27     TAT TAT TAT TAA TAT TAT CAT TAT TAT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       259817 
 Total number of repeats detected..............       13 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCA      4       3       1       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    1 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    1 TGT      =    1 
   0 ATG +    0 TGA +   2 GAT +   1 CAT +   1 ATC +    0 TCA      =    4 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   1 AGC +    4 GCA +   0 CAG +   0 GCT +   0 CTG +    0 TGC      =    5 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    2 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7302766|gb|AE003803.1|AE003803 Drosophila melanogaster genomic scaffold 142000013386047 section 13 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    10331  GCA *  7    19/21     GCA GCA GCA GCA GCA GCT CCA
    10353  CAG *  7    19/21     CAG CAG CAA CAG CAT CAG CAG
    13372  GGT *  7    19/21     GGT GGT GGC GGT GGT GGT GGC
    16624  GGT *  7    19/21     GGT GGT GGT GGT GGT GGT GTG
    31828  ACA *  7    19/21     ACA ACA TCA ACA ACA ACG ACA
    33862  GAT *  7    19/21     GAT GAT GAT GAT GGT GAT GAC
    75958  TGC *  8    22/24     TGC TGC TGT TGC TGA TGC TGC TGC
   102726  TTA *  7    19/21     TTA TTA TTA TTA TTA TTT TGA
   104436  CAG *  7    19/21     CAG CAG CAG CAG CAG CAG CCA
   123306  CAT *  7    19/21     CAT CAT CAT CAT CAT CAC CAG
   124327  CCA *  8    22/24     CCA CCG CCA GCA CCA CCA CCA CCA
   124351  ACA *  8    22/24     ACA ACA ACA ACA ACA ATA ATA ACA
   137000  AAT *  8    23/24     AAT AAT AAT AAA AAT AAT AAT AAT
   141448  TGC *  7    20/21     TGC TGC TGC TGC TGC TGC TGT
   148897  ATC *  8    22/24     ATC ATC ATC ATC ATC ATC AAC AGC
   150499  CCA *  7    19/21     CCA CCA ACA CCA CCA CCA CCC
   159945  ATA *  8    22/24     ATA ATA ATA AAT ATA ATA ATA ATA
   163044  TTA *  7    19/21     TTA TTA TTA TTG TTA TTG TTA
   164759  TGC * 11    30/33     TGC TGC TGT TGC TGA TGC TGC TGC TGC TGC TGT
   164957  GCT *  7    19/21     GCT GCT GTT GCT GCT GCT GCC
   175087  GCT *  8    22/24     GCT GCT GCT GCT GCT GCA GCA GCT
   176091  TGC *  7    19/21     TGC TGC GGC TGC GGC TGC TGC
   176316  TGC *  8    22/24     TGC TGC TGC TGC TGC TGC TGC AGA
   176737  TTA *  7    20/21     TTA TTA TTA ATA TTA TTA TTA
   176841  TTG * 20    54/60     TTG TTG TTG ATG TTG TTG TTG TTG TTG TTG TTG TGG TGG TGG TTG TTG TTG TTG TTG GGG
   179519  GCG *  7    19/21     GCG GCG GCA GCG GCG GCG GCA
   179543  GCG *  7    20/21     GCG GCG GCG GCG GCA GCG GCG
   179568  TTG *  7    19/21     TTG TGG TTG TTG TTG CTG TTG
   179616  TGT *  9    25/27     TGT GGT TGT TGT TGT TGT TGA TGT TGT
   187614  TGG * 11    30/33     TGG TCG TGG TGG TGG TGA TGG TGG TGG TGG AGG
   221262  AAC * 14    38/42     AAC CAC AAA AAC AAC AAC AAC AAC AAC AAC AAC AAC AGC AGC
   225775  CAT *  7    20/21     CAT CAT CAT CGT CAT CAT CAT
   229955  GCA *  7    19/21     GCA GCA GCA ACA GCG GCA GCA
   238245  GCA *  7    19/21     GCA GCA GCA GCA GCA AAA GCA
   250387  AAT *  9    25/27     AAT AAT GAT AAT AAT AAT AAT AAT TAT
   259067  GGC *  7    19/21     GGC GTC GGT GGC GGC GGC GGC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       282588 
 Total number of repeats detected..............       36 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  AAC      1       0       0       1       0       0       0       0       0       0       0       0       0   
  ATA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TTA      3       3       0       0       0       0       0       0       0       0       0       0       0   
  TTG      2       1       0       0       0       1       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGC      5       4       1       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      3       3       0       0       0       0       0       0       0       0       0       0       0   
  GCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   2 AAT +    1 ATA +   0 TAA +   0 ATT +   3 TTA +    0 TAT      =    6 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    2 ACA +   0 CAA +   0 GTT +   2 TTG +    1 TGT      =    6 
   0 ATG +    0 TGA +   1 GAT +   2 CAT +   1 ATC +    0 TCA      =    4 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    3 GCA +   2 CAG +   2 GCT +   0 CTG +    5 TGC      =   12 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    2 CCA +   0 CAC +   2 GGT +   0 GTG +    1 TGG      =    5 
   1 GGC +    2 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    3 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7302706|gb|AE003802.1|AE003802 Drosophila melanogaster genomic scaffold 142000013386047 section 12 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     5061  CAG *  7    19/21     CAG GAG CAG GAG CAG CAG CAG
   122816  AGC * 10    28/30     AGC AGC AGC AGC AGC AGC AGC AGC AGC GAC
   158449  GGA *  7    19/21     GGA GGA GGA GTA GGA GGA GCA
   207710  TGT *  8    22/24     TGT TGT TGT AGT TGT TGT TGT CGT
   208171  TTG *  7    19/21     TTG CTG GTG TTG TTG TTG TTG
   211042  TTG *  7    19/21     TTG TTG TTG TTG TCG TTG TTC
   252991  TTG *  7    19/21     TTG CTG TTG TTG TTC TTG TTG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       262401 
 Total number of repeats detected..............       7 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AGC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TTG      3       3       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   3 TTG +    1 TGT      =    4 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    1 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   1 AGC +    0 GCA +   1 CAG +   0 GCT +   0 CTG +    0 TGC      =    2 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7302679|gb|AE003801.1|AE003801 Drosophila melanogaster genomic scaffold 142000013386047 section 11 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    13634  ATA *  7    20/21     ATA ATA ATA ATG ATA ATA ATA
    46212  AGC *  7    19/21     AGC AGC AGC AGC AGC AGT ATC
    49300  GCT *  8    22/24     GCT GAT GCG GCT GCT GCT GCT GCT
    65080  GCT * 10    27/30     GCT GCT GCT GCT GCT GCT GCT GCC ACT GCC
    81225  GCA * 25    69/75     GCA GCA GCA GAA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA AAA GAA GCA GCA ATA GCA
    92285  TGC *  9    25/27     TGC TGA TGC TGA TGC TGC TGC TGC TGC
   116214  TGA *  9    25/27     TGA TGA CGA TGA CGA TGA TGA TGA TGA
   126814  TCC *  8    23/24     TCC ACC TCC TCC TCC TCC TCC TCC
   129833  TTG *  7    19/21     TTG TTG TTG TTA TTG TTG TCG
   129880  GTT *  8    22/24     GTT GTT GTT GTT GTT GTT GTT GCC
   132613  CAA *  7    19/21     CAA CAA CAA GAA CAA GAA CAA
   204726  TGA *  7    19/21     TGA TGG CGA TGA TGA TGA TGA
   223689  AAT *  8    22/24     AAT AAT AAT AAT AAT AAT AAT ACA
   234885  TGC *  8    22/24     TGC TGT TGT TGC TGC TGC TGC TGC
   235077  CTG *  8    22/24     CTG ATG TTG CTG CTG CTG CTG CTG
   245226  TGC *  8    22/24     TGC TGT TGC TGC TGC TGC TGC TGT
   245253  TGC *  7    19/21     TGC TGC TGT TGT TGC TGC TGC
   250633  TGT * 10    27/30     TGT TGT TGT TGT TGT TTT TGT TGT TGC TGC
   250691  ACG *  7    19/21     ACG ACG ACG ACG ACG ACG GCA
   251768  TGC *  7    20/21     TGC TGC TGC TGC TGC TGT TGC
   251855  TGC * 25    68/75     TGC TGC TGC TGC TGG TGT TGC TGC TGC TGC TGC TGC TGT TGC TGT TGC TGC TGC TGC TGC TGT TGC TGG TGA TGC
   255615  GCT *  8    22/24     GCT GCT GAT GGT GCT GCT GCT GCT
   258839  AAC *  8    22/24     AAC AAC AAC AAC ACA AAC AAC AAC
   259041  TTG *  7    19/21     TTG CTG TTG TTG TTG TTG GTG
   262290  GGA *  7    20/21     GGA TGA GGA GGA GGA GGA GGA
   264159  CTG *  9    25/27     CTG CTG TTG CTG CTG CTG CTG TTG CTG
   268978  CAA * 10    27/30     CAA CAA TGA CAA CAA CAA CAA CAA CAA CAC
   269867  GCT * 10    27/30     GCT GCT GCT GCT GCT GCT GCT GTT GTT GGT
   269950  TGT *  9    25/27     TGT TTT AGT TGT TGT TGT TGT TGT TGT
   270873  TGC *  7    19/21     TGC TGC TGC CGC CGC TGC TGC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       272650 
 Total number of repeats detected..............       30 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  TGC      7       6       0       0       0       0       0       1       0       0       0       0       0   
  TCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       0       0       0       0       0       0       1       0       0       0       0       0   
  GCT      4       2       2       0       0       0       0       0       0       0       0       0       0   
  CAA      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    1 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    0 ACA +   2 CAA +   1 GTT +   2 TTG +    2 TGT      =    8 
   0 ATG +    2 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    1 GGA +   0 GAG +   0 CCT +   0 CTC +    1 TCC      =    2 
   1 AGC +    1 GCA +   0 CAG +   4 GCT +   2 CTG +    7 TGC      =   15 
   1 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7302632|gb|AE003800.1|AE003800 Drosophila melanogaster genomic scaffold 142000013386047 section 10 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     1431  TGT *  8    22/24     TGT TGT TGT TGT TGT TGT TGT AGC
    27461  GCT *  7    19/21     GCT GCC GCT GCT GCT GCT GCC
    28471  GCT *  7    19/21     GCT GCT GCT CCT GCT CCT GCT
    28494  TGC *  8    22/24     TGC TGC TGC TGC TGC TGC TGG TGG
    28821  TGC *  7    19/21     TGC TGT TGC TGC TGC GGC TGC
    28845  TGC * 11    31/33     TGC TGT TGC TGC TGC TGC TGC TGC TGC TGC TTC
    28907  TGC *  9    25/27     TGC CGC CGC TGC TGC TGC TGC TGC TGC
    29161  GCT * 12    34/36     GCT ACT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCC
    29733  ATG * 12    33/36     ATG ACC ATG ATG ATG ATG ATG ATG ATG ATG ATG GTG
    33462  ACA *  8    22/24     ACA ATA ACA ACA ACA ACA ACA AAA
    33553  AAC *  7    20/21     AAC AGC AAC AAC AAC AAC AAC
    33683  CAA *  9    26/27     CAA CAA CAA CAA CAA CAA CAG CAA CAA
    33851  GTT *  7    19/21     GTT GTT GTT GTT GTT ATT GTG
    38043  GCA *  8    22/24     GCA ACG GCA GCA GCA GCA GCA GCA
    57279  CAG *  8    23/24     CAG CAG CAG CAG CAG CAG CAG CAA
    59284  GCA *  8    22/24     GCA GCC GCA GCA GCA GCC GCA GCA
    59395  CAG *  8    22/24     CAG CAG CAG CAA CAA CAG CAG CAG
    59491  CAG *  7    19/21     CAG CAA CAG CAG CAG CAG CAA
    59518  CAG * 11    30/33     CAG CAG CAG CAG CAA CAA CAG CAG CAG CAG CAA
    59557  CAG *  7    19/21     CAG CAG CAG CAG CAA CAA CAG
    66109  CAG *  8    22/24     CAG CTG CAG CAG CAG CAG CAG CAA
    72552  GCA *  8    23/24     GCA GCA GCA GCA GCA GCA GCA ACA
    72746  GCA * 11    30/33     GCA GCA GCA AAA GCA GCA GCA GCA GCA GCA TCA
    77306  GAG *  7    19/21     GAG AAG GAG GAG GAG GTG GAG
    83081  TGA *  7    20/21     TGA TGA TGA TGA TGA TGA TGG
    87123  GCA *  7    19/21     GCA GCA GCA GCA GCA GAG GCA
    94156  CAA *  7    19/21     CAA CAG CAA CAG CAA CAA CAA
   124818  AGG * 10    28/30     AGG AGG AGG AGG AGG AGG AGG AGG AAG AAG
   132262  TAA *  7    19/21     TAA TAA TAA CAA TAA TAA TAT
   132797  GCT *  9    25/27     GCT GCT GCT GCT GCT GAC GCT GCT GCT
   135102  CGC * 10    28/30     CGC CGC CGC CGC CTC CGC CGC CGC CGC CGA
   164133  AAC *  7    19/21     AAC AAC AGC AGC AAC AAC AAC
   183378  GTT * 10    27/30     GTT GTT GTT GTT GTT GTT GTT GAT TTT GTC
   203833  GGT *  7    19/21     GGT GGT GGT GGT GAT GGA GGT
   204097  CTG *  7    19/21     CTG CTG CTG CAG CTG CTG CTA
   207089  TTG *  7    19/21     TTG TTG TTG TTG TCG ATG TTG
   217926  CAG *  7    20/21     CAG CAG CAG CAG CAG CAA CAG
   220484  CAG *  7    19/21     CAG CAG CAA CAG CAG CAG CGG
   229526  TTA *  7    19/21     TTA TTA TTA TTA TTA TTA TGC
   232158  CAT *  8    22/24     CAT CAA CCT CAT CAT CAT CAT CAT
   232310  TGC *  7    19/21     TGC TGC TGC TGA CGC TGC TGC
   238447  CAG *  7    19/21     CAG CGC CAG CAG CAG CAG CAG
   238896  GCA *  7    19/21     GCA GCA GCA ACA GCA ACA GCA
   244173  TGC *  7    19/21     TGC TGC TGC TGT TGC AGC TGC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       267271 
 Total number of repeats detected..............       44 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  ATG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  AGG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      6       5       1       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      6       5       1       0       0       0       0       0       0       0       0       0       0   
  GCT      4       3       1       0       0       0       0       0       0       0       0       0       0   
  CAA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      9       8       1       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CGC      1       0       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   1 TAA +   0 ATT +   1 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   2 AAC +    1 ACA +   2 CAA +   2 GTT +   1 TTG +    1 TGT      =    9 
   1 ATG +    1 TGA +   0 GAT +   1 CAT +   0 ATC +    0 TCA      =    3 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   1 AGG +    0 GGA +   1 GAG +   0 CCT +   0 CTC +    0 TCC      =    2 
   0 AGC +    6 GCA +   9 CAG +   4 GCT +   1 CTG +    6 TGC      =   26 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   1 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    1 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7302581|gb|AE003799.1|AE003799 Drosophila melanogaster genomic scaffold 142000013386047 section 9 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    10050  TGG *  7    19/21     TGG CGG TGG TGG TAG TGG TGG
    42917  TCA *  9    25/27     TCA TCA TCA TCA TCA TCA TCA TAA TTA
    57625  AGC * 10    27/30     AGC AGC AGG AGT AGC AGC AGC AGC AGC AGG
    66082  CAC *  7    19/21     CAC CAC CAC CTC CAC CTC CAC
   133199  TTC *  7    19/21     TTC TTC TTC TTC TTC TGC TCC
   169334  CCA *  8    23/24     CCA GCA CCA CCA CCA CCA CCA CCA
   170821  ACC *  7    19/21     ACC ACC ACC ACC ACA ACC AAC
   194213  GTA *  8    23/24     GTA GTT GTA GTA GTA GTA GTA GTA
   236211  CAC *  7    20/21     CAC CAC CAC CAC GAC CAC CAC
   237677  AAC *  9    25/27     AAC AAC AAC AAC GAC AAC AAC AAC AGC
   243969  GAT *  7    19/21     GAT GAC GAT GAT GAT GAT GAC
   245129  AAT *  7    19/21     AAT AAT AAT AAT AAT AAA ATT
   253950  GGA * 10    27/30     GGA TGA GGA GGA GGA GGA GGA GGA GGA GCG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       277015 
 Total number of repeats detected..............       13 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  ACC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CAC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   1 TTC +    0 TCT      =    1 
   1 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    1 
   0 ATG +    0 TGA +   1 GAT +   0 CAT +   0 ATC +    1 TCA      =    2 
   0 AGT +    1 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    1 
   0 AGG +    1 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   1 AGC +    0 GCA +   0 CAG +   0 GCT +   0 CTG +    0 TGC      =    1 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   1 ACC +    1 CCA +   2 CAC +   0 GGT +   0 GTG +    1 TGG      =    5 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7302535|gb|AE003798.1|AE003798 Drosophila melanogaster genomic scaffold 142000013386047 section 8 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     5950  CAA *  7    19/21     CAA CAA CAG CAA CAA CAA CGA
     6171  GAT *  8    22/24     GAT GAT AAT GAT GAT GAT GAT GGT
     7147  CAA *  7    19/21     CAA CAA TAA CAA CAA CAA TAA
    11731  TGC *  7    19/21     TGC TGC TGC TGC TTC GGC TGC
    12066  TGC *  9    26/27     TGC TGC TGC CGC TGC TGC TGC TGC TGC
    14395  TGC * 12    33/36     TGC TGC TGC TGC TGT TGC TGC TTC TGC TGT TGC TGC
    19652  TGC * 10    28/30     TGC TGC TGC TGC TGC TGC GGC TGT TGC TGC
    19684  CTG *  8    23/24     CTG CTG CTG CTG CTG CTG CTG CTC
    29440  ATT *  8    22/24     ATT TTA ATT ATT ATT ATT ATT ATT
    76618  ATT *  8    22/24     ATT ATT ATT ATA ATT ATT ATT ATG
    76814  ATT *  8    22/24     ATT ATT ATT ATA ATT ATT ATT ATG
    93843  TAA *  8    22/24     TAA TAA TAA TAG TAA TAA TAA TTA
    99628  CTG *  7    19/21     CTG CTG CTG CTG CTG CAC CTG
   117451  TCA *  7    19/21     TCA TCA TCA TCA TCT TCA TCG
   131921  GAG *  7    20/21     GAG GAG GAG GAG GAG GAG GAA
   139664  CCA *  9    25/27     CCA CCA CCA CCA GCA CCA CCA CCA CCT
   144622  TGC *  9    25/27     TGC TGC TGT TGC TGC TGC TGC AGC TGC
   144701  TGC *  9    25/27     TGC TGC TGC CGC TGC TGT TGC TGC TGC
   144970  CCT *  7    19/21     CCT CCT CCA CGT CCT CCT CCT
   145205  CAT *  8    22/24     CAT CAT CAT CAT CAT CAT CAT CGG
   174655  CAT *  7    19/21     CAT CAT CAT TAT CAT CAT CAG
   184215  TCC *  7    19/21     TCC TCA TCC TGC TCC TCC TCC
   187595  TGC *  7    19/21     TGC TGC TGT TGC TGT TGC TGC
   188812  GTT * 10    28/30     GTT GTA GTT GTT GTT GTT GTT GTT GTT GTG
   219170  ACA * 12    33/36     ACA ACA ACA AAA ACA ACA ACA ACA ACA ACG ACA AGA
   235102  ATA *  7    19/21     ATA ATA ATA ATT ATA ATT ATA
   235867  TAT *  7    19/21     TAT TAG TAT TAG TAT TAT TAT
   242294  TTG *  8    22/24     TTG TGG TTG CTG TTG TTG TTG TTG
   245276  CAG *  7    19/21     CAG CAA CTG CAG CAG CAG CAG
   256122  ATT *  7    19/21     ATT ATT ATT ATT ACC ATT ATT
   256883  GGT *  8    24/24     GGT GGT GGT GGT GGT GGT GGT GGT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       261090 
 Total number of repeats detected..............       31 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATT      4       4       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      7       5       2       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    1 ATA +   1 TAA +   4 ATT +   0 TTA +    1 TAT      =    7 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    1 ACA +   2 CAA +   1 GTT +   1 TTG +    0 TGT      =    5 
   0 ATG +    0 TGA +   1 GAT +   2 CAT +   0 ATC +    1 TCA      =    4 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   1 GAG +   1 CCT +   0 CTC +    1 TCC      =    3 
   0 AGC +    0 GCA +   1 CAG +   0 GCT +   2 CTG +    7 TGC      =   10 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    1 CCA +   0 CAC +   1 GGT +   0 GTG +    0 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7302512|gb|AE003797.1|AE003797 Drosophila melanogaster genomic scaffold 142000013386047 section 7 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    18467  TGC *  8    22/24     TGC TGT TGC TGC TGC TGC TGC TGA
    18614  TGC * 10    27/30     TGC TGC GCC TGC TGC TGC TGC TGC TGC TGT
    59706  TGC * 11    30/33     TGC TGC TGC TGC TGC TGC TGC TGG TGC GCC TGC
    86504  TGC *  8    22/24     TGC TTC TGC TGC TGT TGC TGC TGC
    87519  TTG *  7    19/21     TTG CTG TTG TTG TTG TTA TTG
   124725  TCG * 15    41/45     TCG TTG TCG TCG TTG TCG TCG TCG TCG TCG TCG TCG TCG TCG GTG
   136107  CTG *  8    22/24     CTG CTG CTT CTG ATG CTG CTG CTG
   137083  GGT *  7    20/21     GGT GGT GGT GGT GGT GGT GTT
   149300  CAG * 15    41/45     CAG CAA CAG CAG CAG CAG CAG CAG AAG CAG CAG CAA CAG CAG CAA
   149385  AGC *  9    25/27     AGC AGC AGC AGC AGC AGA ATC AGC AGC
   172193  GCT *  7    19/21     GCT GCT GCC ACT GCT GCT GCT
   179940  TCT *  7    19/21     TCT TCT TCT TCA TCT TCA TCT
   180356  CTT *  7    19/21     CTT CTT CTC CTT CTT CTC CTT
   206497  GGA *  8    22/24     GGA TGA GGA GGA GGA GGA GGA GGT
   211252  TGC *  7    20/21     TGC TGT TGC TGC TGC TGC TGC
   212017  CAG *  7    19/21     CAG CAG CAG CAG CAG TAG CCG
   213029  TGC *  7    19/21     TGC TGC CGC TGT TGC TGC TGC
   220185  ATC *  8    22/24     ATC ATC ATC ATC ATC ATC ATC GTG
   235953  TGC *  7    19/21     TGC TGC TGC TGC TGC AGA TGC
   235977  TGC * 14    39/42     TGC TGC CGC TGC TGC TGC TGC TGC TGC TGC TGC TGC AGT TGC
   241854  TGG *  7    19/21     TGG TGG TGG TGG TGG CGG CGG
   249700  CAA *  7    20/21     CAA CAA CAA CAA CAA CAA CAG
   250002  AAC *  7    19/21     AAC AAC AGC AAC GAC AAC AAC
   251350  GTT *  8    22/24     GTT GCT GAT GTT GTT GTT GTT GTT
   257248  GAC *  8    22/24     GAC GAC AAC GAC AAC GAC GAC GAC
   259562  GCA * 11    31/33     GCA GCA GGA GCA GCA GCA GCA GCG GCA GCA GCA
   269873  GCT *  8    22/24     GCT GCT GCT GCT GCT GCA GTT GCT
   274042  AGC * 12    33/36     AGC AAC AGC AGC AGC AGC AGC AGC AGG AGC AGC AAC
   277614  CTG *  7    19/21     CTG CTG CTG CTG CTG CTG ATT
   279024  TCA *  7    19/21     TCA TCA TCA TCA TCA GCA GCA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       287859 
 Total number of repeats detected..............       30 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      2       1       1       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      8       5       2       1       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCG      1       0       0       1       0       0       0       0       0       0       0       0       0   
  GAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      2       1       0       1       0       0       0       0       0       0       0       0       0   
  CTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   1 CTT +   0 TTC +    1 TCT      =    2 
   1 AAC +    0 ACA +   1 CAA +   1 GTT +   1 TTG +    0 TGT      =    4 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   1 ATC +    1 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    1 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   2 AGC +    1 GCA +   2 CAG +   2 GCT +   2 CTG +    8 TGC      =   17 
   0 ACG +    0 CGA +   1 GAC +   0 CGT +   0 GTC +    1 TCG      =    2 
   0 ACC +    0 CCA +   0 CAC +   1 GGT +   0 GTG +    1 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7302472|gb|AE003796.1|AE003796 Drosophila melanogaster genomic scaffold 142000013386047 section 6 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    48094  GAA *  8    22/24     GAA AAA GAA GAA GGA GAA GAA GAA
   104138  TGC *  7    19/21     TGC TGC TGC TGC TGT TGC CGC
   116211  CCT *  7    19/21     CCT CCT CCT CCT CCT CCA CCA
   119740  AGG *  7    19/21     AGG AGT GGG AGG AGG AGG AGG
   127316  CAG * 11    30/33     CAG CAG CAG CAG CAT CAG CAG CAG CAG CAA CAA
   143452  GCT *  7    19/21     GCT GCG GCT GCT GTT GCT GCT
   143519  CTG *  7    19/21     CTG CTG CTG TCG CTG CTG CTG
   143782  GCT *  7    19/21     GCT GTT GCT GCG GCT GCT GCT
   147144  TGC *  7    19/21     TGC TGC TGC TGT TGC TGC AGC
   184949  GCT *  7    19/21     GCT GCT GCT GCT GCT GCT CAT
   223309  CTG *  7    19/21     CTG CTG CTG CTG CTG TTG CGG
   223429  GCT *  7    19/21     GCT GCT GCT GCT GCT GCC GTT
   223473  CTC *  9    25/27     CTC CAA CTC CTC CTC CTC CTC CTC CTC
   224741  AAT *  7    19/21     AAT AAT AAT AAT AAC AAT AAA
   230813  CAG *  8    23/24     CAG CAG CAG CAG CAG CAG CAG CAT
   242019  CAT *  8    23/24     CAT CAT CAT CAT CAT CGT CAT CAT
   259909  AAG *  7    20/21     AAG AAG AAG AAG ACG AAG AAG
   260266  GCT *  8    24/24     GCT GCT GCT GCT GCT GCT GCT GCT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       268420 
 Total number of repeats detected..............       18 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      5       5       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   1 AAG +    0 AGA +   1 GAA +   0 CTT +   0 TTC +    0 TCT      =    2 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    0 
   0 ATG +    0 TGA +   0 GAT +   1 CAT +   0 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   1 AGG +    0 GGA +   0 GAG +   1 CCT +   1 CTC +    0 TCC      =    3 
   0 AGC +    0 GCA +   2 CAG +   5 GCT +   2 CTG +    2 TGC      =   11 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7302434|gb|AE003795.1|AE003795 Drosophila melanogaster genomic scaffold 142000013386047 section 5 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

   102061  GAT *  9    25/27     GAT GAT GAT GAT GAT GAT GAC GAT GAC
   138485  ACA *  7    19/21     ACA ACA ACA ACA AAA ACT ACA
   139591  ACA *  9    25/27     ACA ACA ACA ACA GCT ACA ACA ACA ACA
   142502  CAA * 10    27/30     CAA CAA CAT CAA CAA CAA CTA CAA CAA CAG
   165707  AGT *  7    20/21     AGT AGT AGT TGT AGT AGT AGT
   168830  CAA * 11    30/33     CAA CAA CAA CAA CAA CAA CAT CAA CAA CAA GCA
   183965  ACA *  7    19/21     ACA ACA ACA ACA GCT ACA ACA
   211941  CAA *  7    19/21     CAA CAA CAA CAA CAA CAG CAG
   212081  GCA *  8    23/24     GCA GCA GCA CCA GCA GCA GCA GCA
   243586  CAA *  7    20/21     CAA CAA AAA CAA CAA CAA CAA
   244801  GTT *  7    19/21     GTT GTT GTT GTT GTT GCT GTA
   246991  TGC * 11    30/33     TGC TGC TGC TGC TGC TGT TGC TGC TGC TGA TCC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       260400 
 Total number of repeats detected..............       12 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      3       3       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      4       2       2       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    3 ACA +   4 CAA +   1 GTT +   0 TTG +    0 TGT      =    8 
   0 ATG +    0 TGA +   1 GAT +   0 CAT +   0 ATC +    0 TCA      =    1 
   1 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    1 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    1 GCA +   0 CAG +   0 GCT +   0 CTG +    1 TGC      =    2 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7302424|gb|AE003794.1|AE003794 Drosophila melanogaster genomic scaffold 142000013386047 section 4 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    14175  GCA *  7    19/21     GCA GCA GCA GAA TCA GCA GCA
    53904  GAT *  7    19/21     GAT GAT GAT GCT GAT GAG GAT
    55938  TGC *  7    19/21     TGC TGC TGC TTC TGC TGT TGC
    71372  ATA * 18    50/54     ATA ATA ACA ATA ATA ATA ACA ATA ATA ATA ATA ATA TTA ATA ATA ATT ATA ATA
    78352  ATA * 18    50/54     ATA ATA ACA ATA ATA ATA ACA ATA ATA ATA ATA ATA TTA ATA ATA ATT ATA ATA
   163467  TGC * 14    38/42     TGC TGC TGC TGC TGC TGC TGC TGT TGT TGC TGC TGC TGA TGG
   184294  CTT *  9    25/27     CTT CTT CTT CTT CTT CTT CTT CTT GGT
   241503  TAT *  7    19/21     TAT TAT TAT AAT AAT TAT TAT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       261083 
 Total number of repeats detected..............       8 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATA      2       0       0       0       2       0       0       0       0       0       0       0       0   
  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       1       0       1       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    2 ATA +   0 TAA +   0 ATT +   0 TTA +    1 TAT      =    3 
   0 AAG +    0 AGA +   0 GAA +   1 CTT +   0 TTC +    0 TCT      =    1 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    0 
   0 ATG +    0 TGA +   1 GAT +   0 CAT +   0 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    1 GCA +   0 CAG +   0 GCT +   0 CTG +    2 TGC      =    3 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7302408|gb|AE003793.1|AE003793 Drosophila melanogaster genomic scaffold 142000013386047 section 3 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    21739  ATG *  7    19/21     ATG ATT ATG ATG ATG GTG ATG
    35068  TTA *  7    20/21     TTA CTA TTA TTA TTA TTA TTA
    37920  GCA * 13    36/39     GCA GCA GAA GCA GCA GCA GCA GCA CCA CCA GCA GCA GCA
    46383  AAT *  7    19/21     AAT AAT CAA AAT AAT AAT AAT
    48958  GCT *  8    22/24     GCT GCT GTT GCT GTT GCT GCT GCT
    49781  ATC * 13    36/39     ATC ATC ATC ACC ATC ACC ATC ATC ATC ATT ATC ATC ATC
    50295  CAG * 11    30/33     CAG CAA CAG CAG CAG CAG CAG CAG CAG CAA CAA
    50472  GCA *  7    19/21     GCA GCA GCG GCA GCG GCA GCA
    65977  CAG * 11    30/33     CAG CAG CAA CAG CAG CAG CAG CAG CGG CAG CAA
    67508  CTG *  8    22/24     CTG CTG CTT CTG CTG CTG CTG TTG
    67572  TGC *  8    22/24     TGC TGC TGC TGC TGC TGG TGC TGG
    72912  CTG *  7    20/21     CTG CTG CTG CTG CTG CTG CTC
    89748  GCT *  8    22/24     GCT GCT GAT GTT GCT GCT GCT GCT
    89774  TGC * 14    39/42     TGC TGA TGC TGC TGC TGC TGC TGC TGC TGC TGC TGG TTC TGC
    91548  TGC *  7    20/21     TGC TGC TGC TGC TGC TGA TGC
    99923  GAT *  8    22/24     GAT GAT GAT GAT GCT GAT GCT GAT
   108031  GAT * 12    33/36     GAT GAT GAT GAT GAT GAT GAG GAT GAC GAT GAG GAT
   114373  TGT *  7    19/21     TGT TGT TGT TGT TGT TGC TGC
   115853  CAG *  7    19/21     CAG TGG CAG CAG CAG CAG CAG
   124361  GCA * 10    27/30     GCA GCA GCA GCA GCA GCA GCA CCA GCT GAA
   136403  CAG *  9    25/27     CAG AAG CAG CAG CAG CAG CAG CAG CAA
   141547  CTG *  7    19/21     CTG TTG CTG CTG CTG TTG CTG
   141766  CTG *  7    19/21     CTG CTG CTG CTG GTG CTG ATG
   147982  CTG *  9    25/27     CTG GTG CTG CTG CCG CTG CTG CTG CTG
   157089  TTG *  7    20/21     TTG TTG TTG TTG TTG TTG CTG
   170302  CTG *  7    20/21     CTG CTG CTG CTG CTG CTG GTG
   195000  GCA *  7    20/21     GCA GCA GCA GCA GCC GCA GCA
   242933  CAT *  7    19/21     CAT CGT CAT CAT CAT CAT CAG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       263693 
 Total number of repeats detected..............       28 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATC      1       0       0       1       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      3       2       0       1       0       0       0       0       0       0       0       0       0   
  GAT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GCA      4       2       1       1       0       0       0       0       0       0       0       0       0   
  GCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      4       2       2       0       0       0       0       0       0       0       0       0       0   
  CTG      6       6       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   1 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   1 TTG +    1 TGT      =    2 
   1 ATG +    0 TGA +   2 GAT +   1 CAT +   1 ATC +    0 TCA      =    5 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    4 GCA +   4 CAG +   2 GCT +   6 CTG +    3 TGC      =   19 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7302377|gb|AE003792.1|AE003792 Drosophila melanogaster genomic scaffold 142000013386047 section 2 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    20004  TGC *  7    20/21     TGC TGC TGT TGC TGC TGC TGC
    20162  TGC *  8    22/24     TGC TGC TCC TGC TGC TGC TGC AGC
    20265  GCT *  8    22/24     GCT GTT GCT GCT GCT GCT GCT GTT
    24628  GCA * 12    33/36     GCA TCA GCA GCA GCA GCA GCA GCA GCA GCA GCA AAA
    28013  CAG *  8    22/24     CAG CAG CAG AAG CAC CAG CAG CAG
    34384  TGC *  8    22/24     TGC TGC TGG TGC TGC TGT TGC TGC
    34669  CAG *  8    22/24     CAG TAG CAG CAG CAG CAG CAG CAA
    42359  GCT * 14    38/42     GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT CTT GAT GAT
    43570  GCT *  7    19/21     GCT GCT GCT GTT GCT GTT GCT
    46686  TGC *  7    19/21     TGC TGC AGC TGC TGC GGC TGC
    47431  GCT *  7    19/21     GCT GCT GCT GGA GCT GCT GCT
    48566  TGT *  7    19/21     TGT TAT TGT TGT TGC TGT TGT
    52606  AAT *  7    20/21     AAT AAT AAT TAT AAT AAT AAT
    64660  GGC *  8    22/24     GGC GGC GGA GGC GGC GGA GGC GGC
    70758  GTC *  7    20/21     GTC GTC GTC GTC GGC GTC GTC
    97564  CTG *  7    19/21     CTG CTG TTG CTG CTG CTT CTG
   111693  CCG *  7    19/21     CCG CCG CCA TCG CCG CCG CCG
   122110  GAT *  8    22/24     GAT GAT GAT GAT GAT GAT GAT GCA
   123132  CTG * 12    34/36     CTG CTG CTG CTG CTG CTG CTT CTG CTG CTG CTG ATG
   151915  AAG *  8    22/24     AAG AGG AAG AAG AAG AAG TAG AAG
   161876  TGC *  7    19/21     TGC TAC TGC TGC TGC TGC TTC
   179644  CAG * 10    27/30     CAG CAG CAG CAG CAG CAG CAA CAG CAA CAT
   208356  GAG *  8    22/24     GAG GAG GAG GAA GAG GAG GAG GAC
   215047  ACA *  7    19/21     ACA ACA ACA ACA ACA ACC ACG
   216924  TGC * 10    27/30     TGC TGC TGC TGC TGC TGC TGC TGC TTC TTT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       261900 
 Total number of repeats detected..............       25 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      6       5       1       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GCT      4       3       0       1       0       0       0       0       0       0       0       0       0   
  CAG      3       2       1       0       0       0       0       0       0       0       0       0       0   
  CTG      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   1 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    1 
   0 AAC +    1 ACA +   0 CAA +   0 GTT +   0 TTG +    1 TGT      =    2 
   0 ATG +    0 TGA +   1 GAT +   0 CAT +   0 ATC +    0 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   1 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   0 AGC +    1 GCA +   3 CAG +   4 GCT +   2 CTG +    6 TGC      =   16 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   1 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   1 GGC +    0 GCG +   0 CGG +   0 GCC +   1 CCG +    0 CGC      =    2 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7302331|gb|AE003791.1|AE003791 Drosophila melanogaster genomic scaffold 142000013386047 section 1 of 52, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    21555  CTG *  7    19/21     CTG CTG CAG CTG CTG CTG CAG
    27488  TGG *  8    22/24     TGG CGG TGG TGG AGG TGG TGG TGG
    35222  TAA *  7    19/21     TAA CAA TGA TAA TAA TAA TAA
    41875  ATT *  7    19/21     ATT ATT ATT ATT ATT AAT AAT
    52582  GAT * 10    28/30     GAT GAT GAT GAT GAT GAT GAT GAT GTT GTT
    54404  GCG *  7    20/21     GCG GCG GCG GCG GCG GCG GCA
    89436  CAT *  8    22/24     CAT CAT CAT CAT CAT TAG CAT CAT
    90786  TGC * 11    30/33     TGC TGC TGC TGC TGC TGC TGC TGC TGC TGT TTT
    93250  ATT * 12    33/36     ATT ATT ATT ATT ATT ATT ATT ATT ATT ATC TTT GTT
   132393  CAG *  9    26/27     CAG CAG CAG CAG CAG CAG CAG CAG CAA
   133805  GAT *  7    19/21     GAT GAT GAT GAT GAT GAC GAA
   148422  ATC *  8    23/24     ATC CTC ATC ATC ATC ATC ATC ATC
   151319  CAG *  7    19/21     CAG CAG CAG CAG CAA CAG CTG
   152351  GTC *  7    19/21     GTC ATC ATC GTC GTC GTC GTC
   186773  TCC *  8    22/24     TCC TCC TCC TCC TCC TCC TCC AAC
   197314  CAA *  7    19/21     CAA CAA AAA CAA CAA CAG CAA
   200936  TGA *  7    19/21     TGA TGA TGA TGA TGA AGC TGA
   249052  TGG *  7    19/21     TGG TGT GGG TGG TGG TGG TGG
   258072  CAT *  8    22/24     CAT CAT CAT CAT CAT CAT CGT CGT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       260580 
 Total number of repeats detected..............       19 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  ATC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   1 TAA +   2 ATT +   0 TTA +    0 TAT      =    3 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   1 CAA +   0 GTT +   0 TTG +    0 TGT      =    1 
   0 ATG +    1 TGA +   2 GAT +   2 CAT +   1 ATC +    0 TCA      =    6 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    1 TCC      =    1 
   0 AGC +    0 GCA +   2 CAG +   0 GCT +   1 CTG +    1 TGC      =    4 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   1 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    2 TGG      =    2 
   0 GGC +    1 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7288937|gb|AE003082.1|AE003082 Drosophila melanogaster genomic scaffold 142000013385249, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     2834  AAT *  8    22/24     AAT AAT AAT AAT AAT AAT AAA AAA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       20167 
 Total number of repeats detected..............       1 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    0 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   0 AGC +    0 GCA +   0 CAG +   0 GCT +   0 CTG +    0 TGC      =    0 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7316096|gb|AE002575.1|AE002575 Drosophila melanogaster genomic scaffold 142000013386038, complete sequence
 
 Position  Repeat     Coverage   Repeat 

-----------------------------------------------------------------------------------------
 Total sequence length.........................       0 
 Total number of repeats detected..............       0 
-----------------------------------------------------------------------------------------------
 

Genomic sequence
gi|7291893|gb|AE003466.1|AE003466 Drosophila melanogaster genomic scaffold 142000013386038 section 15 of 15, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    96231  TGT *  7    19/21     TGT TTT TGT TGT TGC TGT TGT
   123252  AGC *  7    19/21     AGC AGC AAC AAC AGC AGC AGC
   123308  CAG *  7    19/21     CAG CAG CAA CAG CAG CAG CAA
   134725  GAC *  7    19/21     GAC GAA GAC GAT GAC GAC GAC
   138817  GAC *  7    19/21     GAC GAA GAC GAT GAC GAC GAC
   142779  GAC *  7    19/21     GAC GAA GAC GAT GAC GAC GAC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       283099 
 Total number of repeats detected..............       6 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAC      3       3       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    1 TGT      =    1 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   1 AGC +    0 GCA +   1 CAG +   0 GCT +   0 CTG +    0 TGC      =    2 
   0 ACG +    0 CGA +   3 GAC +   0 CGT +   0 GTC +    0 TCG      =    3 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7291836|gb|AE003465.1|AE003465 Drosophila melanogaster genomic scaffold 142000013386038 section 14 of 15, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     7255  CTC *  7    20/21     CTC CTC CTC CTC TTC CTC CTC
    42305  TGC *  8    22/24     TGC TGC TGC TGC TGC TGC TGC GGA
    42347  TGC * 10    27/30     TGC TGC TGC TGC CGC TGC TGC TGC TGC AGA
    42410  GCT *  7    19/21     GCT GAT GCT GCT GCT GCT GCC
    43847  ATA * 18    50/54     ATA ATA ACA ATA ATA ATA ACA ATA ATA ATA ATA ATA TTA ATA ATA ATT ATA ATA
    53209  AAC *  8    22/24     AAC AAC AAC AGC AAC AGC AAC AAC
    56105  GTT *  7    19/21     GTT GTT GTT GCT GTT GCT GTT
   116396  GCA *  9    26/27     GCA GCA GCA GCG GCA GCA GCA GCA GCA
   117870  TCA *  7    19/21     TCA TCA TCA TCA GCA TCA TCC
   119364  GTT *  7    19/21     GTT GTT GTT GTC GTT GTG GTT
   119511  CAA *  7    19/21     CAA CAA CAA CAG CAA CGA CAA
   120033  ATT *  7    20/21     ATT ATT ATT ATT ATT ATT ATG
   132300  AGC *  7    19/21     AGC CGC AGC AGC AGC AAC AGC
   132322  GCA *  8    22/24     GCA GCA GCA GCA GCA GCG GCA ACA
   132624  GCA *  8    22/24     GCA GCA GCA ACA GCA GCA GCC GCA
   135370  GCT *  7    19/21     GCT GCT GCC GCC GCT GCT GCT
   150925  GAG *  7    19/21     GAG CAG GAG AAG GAG GAG GAG
   153994  TCC *  8    22/24     TCC TCC TCC TCC TCC TCC TCC GCA
   193540  GCA *  7    19/21     GCA GCA CCA GCA GCC GCA GCA
   197066  CAG *  7    19/21     CAG CAG CAC CAA CAG CAG CAG
   206955  AGA *  7    19/21     AGA AGA AGA CGA AGA CGA AGA
   227095  AGC *  7    19/21     AGC AGC AGC ACC AGC AGC ATC
   253586  TGG *  7    19/21     TGG TGG GGT TGG TGG TGG TGG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       328500 
 Total number of repeats detected..............       23 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATA      1       0       0       0       1       0       0       0       0       0       0       0       0   
  ATT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       1       1       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCA      4       4       0       0       0       0       0       0       0       0       0       0       0   
  GCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    1 ATA +   0 TAA +   1 ATT +   0 TTA +    0 TAT      =    2 
   0 AAG +    1 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    1 
   1 AAC +    0 ACA +   1 CAA +   2 GTT +   0 TTG +    0 TGT      =    4 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    1 TCA      =    1 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   1 GAG +   0 CCT +   1 CTC +    1 TCC      =    3 
   2 AGC +    4 GCA +   1 CAG +   2 GCT +   0 CTG +    2 TGC      =   11 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    1 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7291775|gb|AE003464.1|AE003464 Drosophila melanogaster genomic scaffold 142000013386038 section 13 of 15, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     7493  TGG *  7    19/21     TGG TCG TCG TGG TGG TGG TGG
    12436  GCT *  7    19/21     GCT GCT GTT GCT GCT GCT GTT
    13453  GCA * 12    33/36     GCA GCA GCA GCA TCA GCA GCA ACA GCA ACA GCA GCA
    15438  TAA *  7    19/21     TAA TAA TAA TAA TAG TAA TAG
    27935  TGA * 10    27/30     TGA TGC TGA TGG TGA TGA TGA TGA TGA TGC
    88087  ACA *  7    19/21     ACA ACA ACA AAA ACA ACA AGA
   111588  GGA *  7    19/21     GGA GCA GGA GGA GGA GGT GGA
   163192  CAA * 10    27/30     CAA CAA CAA CAA CAA CAA CAA CGA GAA CAG
   167760  CTG *  7    19/21     CTG CTG CTT TTG CTG CTG CTG
   167801  GCT * 11    30/33     GCT GCT GCT GTT GCT GTT GCT GCT GCT GTT GCT
   172056  GCA *  7    20/21     GCA GCA GCA GCA GCA GCA GAA
   179530  GAT *  7    19/21     GAT GAT GAT GAT GAT GAT GTG
   183930  TAT *  7    19/21     TAT TAT TAT AAA TAT TAT TAT
   189298  GAT *  8    22/24     GAT GAT GGT GAT GAT GAT GAT GAG
   204447  AGC *  8    22/24     AGC AGC AGC AGC AGC AGC AAC AAC
   233721  GGT *  8    22/24     GGT GGT GGT GGT GGA AGT GGT GGT
   246715  GCT *  8    22/24     GCT GCT GCT GAT GCT GCT GCT GCC
   304997  TTG *  8    22/24     TTG TTG CTG TTG TTG CTG TTG TTG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       306848 
 Total number of repeats detected..............       18 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GCT      3       2       1       0       0       0       0       0       0       0       0       0       0   
  CAA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   1 TAA +   0 ATT +   0 TTA +    1 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    1 ACA +   1 CAA +   0 GTT +   1 TTG +    0 TGT      =    3 
   0 ATG +    1 TGA +   2 GAT +   0 CAT +   0 ATC +    0 TCA      =    3 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    1 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   1 AGC +    2 GCA +   0 CAG +   3 GCT +   1 CTG +    0 TGC      =    7 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   1 GGT +   0 GTG +    1 TGG      =    2 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7291737|gb|AE003463.1|AE003463 Drosophila melanogaster genomic scaffold 142000013386038 section 12 of 15, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    12658  AAG *  7    19/21     AAG AAG AAG AAG AAG GAC AAG
    48516  GCA *  7    19/21     GCA GCA GCA GCA GCA GCA ACC
    51042  GCA *  7    19/21     GCA GCA GCG GCA GCA GCA GAA
    86601  TGC *  7    19/21     TGC TGG TGC TAC TGC TGC TGC
    89567  GCA *  7    19/21     GCA GCC GCA GCA GCA GCC GCA
    90937  GCA *  7    19/21     GCA GCA GCA ACA GCA GCA GCT
    96986  AAG *  7    19/21     AAG GAG AAG AAA AAG AAG AAG
    98993  AAG *  9    25/27     AAG GAG AAG AAA AAG AAG AAG AAG AAG
   128796  ACC *  7    19/21     ACC ACT ATC ACC ACC ACC ACC
   166717  GCT *  7    19/21     GCT GCT GCT GCT GTT CCT GCT
   169315  CAT *  8    22/24     CAT CAT CAT CAT CTT AAT CAT CAT
   171143  TCC * 10    27/30     TCC TCC TCC TCC TCC TCC TCC TCC TCT TGT
   194417  TGC *  7    19/21     TGC TGC TGC TGC CGC TGC GGC
   194662  TGC *  8    22/24     TGC TGC GGC TGC TGT TGC TGC TGC
   195928  GCA * 11    31/33     GCA GCA GCA GCA GCA GCA GCG GCA GCA GCA ACA
   202721  TGC * 12    33/36     TGC TGA TGT TGC TGC TGC TGC TGC TGC TGC TGC TGA
   205034  ACC *  8    23/24     ACC ACC ACC ACC ACC ACG ACC ACC
   205160  CCA * 12    33/36     CCA CTC CCA CCA CCA CCA CCA CCA CCA CCA CCA CAA
   206872  GCG *  7    19/21     GCG GCG GCG GCA GCG GCG GTG
   207979  CAC *  7    19/21     CAC CAC CAC CAC CAC CAA CAA
   208838  GCA *  8    22/24     GCA GCA ACA GCA GCA ACA GCA GCA
   208866  CAG *  8    22/24     CAG CAG CAG CAG CAG TAG CAA CAG
   208936  TCA *  7    19/21     TCA TCA TCG TCC TCA TCA TCA
   210341  GCC *  7    19/21     GCC GCA GCC GCC GCC GCC GCT
   215919  ATC *  8    22/24     ATC ATC ATC ATC ATC ATC ATC AAG
   220285  GCT *  7    19/21     GCT GCT GCA GTT GCT GCT GCT
   221495  GCT *  9    25/27     GCT GCT GCT GCT GTT GCT GCT GCT GCC
   221872  GCT *  8    22/24     GCT GCT GTT GTT GCT GCT GCT GCT
   222224  GCA *  8    22/24     GCA GCA GCA GAA GCA GCA GCA GAA
   244659  TGC *  7    19/21     TGC TGC TGC TGC TGC TGT TGG
   245414  TGT *  8    22/24     TGT TGT TGT TGT TGT TGT TCC TGT
   252828  GCA *  9    25/27     GCA GCA GCA GCA GCA GCA GCA GCA GTT
   254697  TGC *  8    22/24     TGC TGC TGC TGT TGC TGG TGC TGC
   255546  TGC * 18    49/54     TGC TGC TGC TGC TGT TGT TGC TGC TGC TGT TGC TGC TGC TGT TGC TGC TGC TGT
   262963  AGC *  7    19/21     AGC AGC AGC ATC AGG AGC AGC
   266308  CAG * 12    33/36     CAG CAG CAG CAG CAG CAA CAA CAG CAG CAG CAG CAA
   266347  CAG * 10    27/30     CAG CAG CAG CAA CAA CAG CAG CAG CAG CAT
   273825  TGC * 10    28/30     TGC TGT TGC TGC GGC TGC TGC TGC TGC TGC
   274390  GCT * 11    30/33     GCT GCT CCT GCT CCT GCT GCT GCT GCT GCT CCT
   276537  AGC *  7    19/21     AGC AGC AAC AAC AGC AGC AGC
   276593  CAG *  7    19/21     CAG CAG CAA CAG CAG CAG CAA
   285174  TGC * 10    28/30     TGC TGC TGC TGC TGC TGC TGC TGC AGT TGC
   286933  GTT *  7    19/21     GTT GTT GTT GTT GTT GCT GCT
   295776  CAG *  7    19/21     CAG CAG CAG CAG CCG CAG CAA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       299975 
 Total number of repeats detected..............       44 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAG      3       3       0       0       0       0       0       0       0       0       0       0       0   
  ATC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  ACC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      9       5       3       0       1       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      8       7       1       0       0       0       0       0       0       0       0       0       0   
  GCT      5       4       1       0       0       0       0       0       0       0       0       0       0   
  GCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      5       3       2       0       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCA      1       0       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   3 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    3 
   0 AAC +    0 ACA +   0 CAA +   1 GTT +   0 TTG +    1 TGT      =    2 
   0 ATG +    0 TGA +   0 GAT +   1 CAT +   1 ATC +    1 TCA      =    3 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    1 TCC      =    1 
   2 AGC +    8 GCA +   5 CAG +   5 GCT +   0 CTG +    9 TGC      =   29 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   2 ACC +    1 CCA +   1 CAC +   0 GGT +   0 GTG +    0 TGG      =    4 
   0 GGC +    1 GCG +   0 CGG +   1 GCC +   0 CCG +    0 CGC      =    2 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7291637|gb|AE003462.1|AE003462 Drosophila melanogaster genomic scaffold 142000013386038 section 11 of 15, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     3456  GTT * 11    30/33     GTT GCT GTT GTT GTT GTT GTT GTT GTT GTA TTT
    11433  GCT *  8    22/24     GCT GCT GGT GCT GCT GGT GCT GCT
    15245  GCA * 10    27/30     GCA GCA ACA GCA GCA GCA GCA GCA ACA GCC
    29780  CTT *  7    19/21     CTT CTT CTC CTT CTT TTT CTT
    42888  CTG *  8    22/24     CTG CTG CTG CTG CTG CTG CTT CCG
    52599  CGG *  7    19/21     CGG CGG CGT CGG CGG CGG AGG
    59443  AGC *  7    19/21     AGC GAC AGC AGC AGC AGC AGC
    71329  CCT *  7    20/21     CCT CCT CCT CCT CCT CCT CCG
    79084  GCT * 10    27/30     GCT GCT GTT GCT GCT GCT GCT GCT GCT GAC
    86675  CTG * 13    36/39     CTG GTG CTG CTG CTA CTG CTG CTG CTG CTG CTG CTG CTA
    96380  AAC *  7    19/21     AAC AGC AAC AAC AAC AAC AGC
    98287  CAC * 10    27/30     CAC CAC CAC CAT CAC CAC CAC AAC CAC AAC
   202292  AAC * 11    30/33     AAC AAC ACC AAC AAC AAC AAG AAC AAC AAC AAA
   231616  GGC *  7    20/21     GGC GGC GGC GGA GGC GGC GGC
   241492  GAG *  7    19/21     GAG GGC GAG GAG GAG GAG GAG
   241817  GGA * 11    30/33     GGA AGA GGA GGT GGA GGA GGA GGA GGA TGA GGA
   252371  GCC *  7    19/21     GCC GCC GCC GCC GCT GCC GCT
   290893  AAT *  7    20/21     AAT AAT AGT AAT AAT AAT AAT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       300542 
 Total number of repeats detected..............       18 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AAC      2       1       1       0       0       0       0       0       0       0       0       0       0   
  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GGA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GCT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      2       1       0       1       0       0       0       0       0       0       0       0       0   
  CGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   0 GAA +   1 CTT +   0 TTC +    0 TCT      =    1 
   2 AAC +    0 ACA +   0 CAA +   1 GTT +   0 TTG +    0 TGT      =    3 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    1 GGA +   1 GAG +   1 CCT +   0 CTC +    0 TCC      =    3 
   1 AGC +    1 GCA +   0 CAG +   2 GCT +   2 CTG +    0 TGC      =    6 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   1 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   1 GGC +    0 GCG +   1 CGG +   1 GCC +   0 CCG +    0 CGC      =    3 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7291588|gb|AE003461.1|AE003461 Drosophila melanogaster genomic scaffold 142000013386038 section 10 of 15, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    42859  GCT *  8    22/24     GCT GGT GCT GCT GCT GCT CCT GCT
    44562  GTT *  8    22/24     GTT GTT GCT GCT GTT GTT GTT GTT
    99049  CCT *  9    25/27     CCT CCT CCT CCT CCT CCT GCT GCT CCT
   119227  ACA * 11    30/33     ACA ATA ACA ACA ACA ACA ATA ACA ACA ACA ACG
   119674  AGC *  9    26/27     AGC AGC AGC AGC AAC AGC AGC AGC AGC
   119983  ATG * 10    27/30     ATG ATG ATG ATG ACG ATG ATG ATG ATG AAT
   137269  TAT * 11    30/33     TAT TAT TAT TAT TAA TAT TAT TAT TAT TAT ATT
   142516  CCA * 10    27/30     CCA TCA CCA CCA CCA CCA CCA CCA CCC ACA
   150823  CGT *  7    21/21     CGT CGT CGT CGT CGT CGT CGT
   172883  GCC *  7    19/21     GCC GCC GCT GCC GCC GCC GCA
   173072  CAG * 21    57/63     CAG CAG CAG CAG CAG CAG CAG CAT CAC CAC CAG CAG CAG CAG CAG CAG CAG TCG CAG CAG CAA
   174733  GAG * 11    31/33     GAG GAG GAG AAG GAT GAG GAG GAG GAG GAG GAG
   191605  ATG *  8    22/24     ATG ATG ATG ATG ATG ATG AAG ACG
   197308  AGC *  7    19/21     AGC AAC GGC AGC AGC AGC AGC
   218661  TCC *  8    22/24     TCC TCC TCC TCC TCC TCC CCC TCT
   220938  TGG * 11    31/33     TGG TGG TGA TGG TGG TGG TGG TGG TGT TGG TGG
   234124  TTG *  8    22/24     TTG TTG TTA TTG TTG TTA TTG TTG
   245105  AAT *  8    24/24     AAT AAT AAT AAT AAT AAT AAT AAT
   252783  GCA *  7    19/21     GCA GCA GCT GCC GCA GCA GCA
   258692  TGC *  8    23/24     TGC TGC GGC TGC TGC TGC TGC TGC
   258942  TGT * 10    27/30     TGT TGT TGT TGT TGT TGT TAT TGT TGC TGC
   277060  CTG * 12    33/36     CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG GGT CTG
   277202  TGC *  7    20/21     TGC TGC TGC TGC TGT TGC TGC
   277273  GGT * 10    27/30     GGT GGT GGT GGT GGT GGT GGT GCT GCT GCT
   277579  CTG *  7    20/21     CTG TTG CTG CTG CTG CTG CTG
   277647  TGC *  8    22/24     TGC TGG TGC TGC TGC TGC TGC TGG
   277912  GCT *  9    25/27     GCT GCT GCT ACC GCT GCT GCT GCT GCT
   294329  GCA * 10    27/30     GCA GCA GCA GCA GCA GCA GCA GCA GCA AGT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       298616 
 Total number of repeats detected..............       28 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATG      2       1       1       0       0       0       0       0       0       0       0       0       0   
  AGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TAT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGC      3       3       0       0       0       0       0       0       0       0       0       0       0   
  TCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GCA      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       0       0       0       0       1       0       0       0       0       0       0       0   
  CTG      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    1 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    1 ACA +   0 CAA +   1 GTT +   1 TTG +    1 TGT      =    4 
   2 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   1 GAG +   1 CCT +   0 CTC +    1 TCC      =    3 
   2 AGC +    2 GCA +   1 CAG +   2 GCT +   2 CTG +    3 TGC      =   12 
   0 ACG +    0 CGA +   0 GAC +   1 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    1 CCA +   0 CAC +   1 GGT +   0 GTG +    1 TGG      =    3 
   0 GGC +    0 GCG +   0 CGG +   1 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7291543|gb|AE003460.1|AE003460 Drosophila melanogaster genomic scaffold 142000013386038 section 9 of 15, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     6323  CTC *  8    22/24     CTC CTT CTC CTC CTC CTC CTC CTG
    55915  GAA *  7    20/21     GAA GAA GAA GAA GAA GAC GAA
    57377  GCA *  7    20/21     GCA GCA GCA GCA GCA GCT GCA
    65334  ATT *  7    19/21     ATT ATT ATT ATT ATT ATT GGT
    83041  CCA *  7    19/21     CCA CCA CCA CCT CCA CCG CCA
    94886  TGA *  8    23/24     TGA TGA TGA TGA TGA TGA TGA TGG
    95977  GGA *  8    22/24     GGA GAA GGA GGA GGC GGA GGA GGA
   102711  TGC * 14    38/42     TGC TGC TGC TGC TGT TGC TGC TGC TGC TGG TGC TGC TGG TGG
   104773  GCC * 11    32/33     GCC GCC GCC GCC GCC GCC GCC GCC GCC GAC GCC
   111197  TCC *  8    22/24     TCC TCC CAC TCC TCC TCC TCC TCC
   123989  GAT *  7    20/21     GAT GAT GAT GAT AAT GAT GAT
   125319  GCA *  7    19/21     GCA GCA GCA GCA GCA GCG GCG
   125794  TGC *  9    25/27     TGC TGC TGC TGC TTC TGC TGC TGC TGT
   126136  CCT *  8    22/24     CCT CCT CCT CCC CCT GCT CCT CCT
   151100  CAG *  7    19/21     CAG CAG CAG CAG CAG CAA CAT
   156029  CAG *  7    19/21     CAG CAG CGG CAG CAG GAG CAG
   170174  CCA *  7    20/21     CCA CCA CCA TCA CCA CCA CCA
   178339  CGG *  8    22/24     CGG CAA CGG CGG CGG CGG CGG CGG
   228492  GAG *  7    19/21     GAG GCG GAG GAG GAG GCG GAG
   232620  TGC * 14    38/42     TGC TGC TCC TCC TGC TGC TGC TGC TGC TGC TGC TGC TGC ATC
   241187  GGA *  7    19/21     GGA GGA GGA GGC GGA GGC GGA
   241211  GGA *  7    19/21     GGA GGC GGA GGC GGA GGA GGA
   269018  GAG * 10    27/30     GAG GAG GAG GAG GAG GAG CAG GAG GAT GTG
   276375  AGG *  8    23/24     AGG AGG ACG AGG AGG AGG AGG AGG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       297907 
 Total number of repeats detected..............       24 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      3       1       0       2       0       0       0       0       0       0       0       0       0   
  TCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAG      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GGA      3       3       0       0       0       0       0       0       0       0       0       0       0   
  GCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GCC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CAG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   1 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   1 GAA +   0 CTT +   0 TTC +    0 TCT      =    1 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    0 
   0 ATG +    1 TGA +   1 GAT +   0 CAT +   0 ATC +    0 TCA      =    2 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   1 AGG +    3 GGA +   2 GAG +   1 CCT +   1 CTC +    1 TCC      =    9 
   0 AGC +    2 GCA +   2 CAG +   0 GCT +   0 CTG +    3 TGC      =    7 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    2 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    2 
   0 GGC +    0 GCG +   1 CGG +   1 GCC +   0 CCG +    0 CGC      =    2 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7291495|gb|AE003459.1|AE003459 Drosophila melanogaster genomic scaffold 142000013386038 section 8 of 15, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    13053  CAG *  7    19/21     CAG CAT CAG CAG CAG CCG CAG
    13086  CAA *  7    19/21     CAA CAA CAG CAG CAA CAA CAA
    13107  CAG * 12    33/36     CAG CAA CAG CAG CAG CAG CAG CAG CAA CAG CAG CAA
    55546  CCG *  7    19/21     CCG CCG CCG CCG CCA CCA CCG
    86027  AGG * 12    33/36     AGG AGG AGG AGG AGG AGG AGG AAG AGG AGG AGC AGA
    94492  GCT * 10    27/30     GCT GCT GCT GCT GCT GCT GCT GCT GGT AGT
   122492  AGT *  8    22/24     AGT AGC AGT AGT AGT AGT AGT AGG
   132998  CTG *  7    19/21     CTG CAG CTG CTG CTG CTG CAG
   139681  AAC *  7    20/21     AAC AAC AGC AAC AAC AAC AAC
   147614  TCG *  7    19/21     TCG TCG TCG TCT TCG TCT TCG
   147727  CCT * 11    30/33     CCT CCT CCT CCT CCT CCT GCT CCT GCT CCT CGT
   149813  GGA *  8    22/24     GGA GGA GGA TGA GGA GGA CGA GGA
   150477  CAG *  8    22/24     CAG CAG CAG CAG CAG CAG CAG CCA
   161527  TGC * 11    30/33     TGC TGC TGC TGC TGC TGC TGC CGC TGC TGT TGT
   165600  CAG *  7    19/21     CAG CTG CAG CAC CAG CAG CAG
   165645  CAG *  7    19/21     CAG CAG CAC CAC CAG CAG CAG
   166188  CAG *  7    19/21     CAG CAG CAG CAG TCG CAG CAG
   193352  CCG *  7    19/21     CCG CCT CCT CCG CCG CCG CCG
   193390  TCC *  7    19/21     TCC ACC TCC TCC TCC TCC GCC
   255751  ATG *  7    19/21     ATG GCG ATG ATG ATG ATG ATG
   287286  CTG *  9    25/27     CTG CTG CTG CTG CTG CTG CTG CTG AGG
   287318  GCT *  7    19/21     GCT GCT TCC GCT GCT GCT GCT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       299572 
 Total number of repeats detected..............       22 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      6       5       1       0       0       0       0       0       0       0       0       0       0   
  CTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CCT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  CCG      2       2       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    0 ACA +   1 CAA +   0 GTT +   0 TTG +    0 TGT      =    2 
   1 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    1 
   1 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    1 
   1 AGG +    1 GGA +   0 GAG +   1 CCT +   0 CTC +    1 TCC      =    4 
   0 AGC +    0 GCA +   6 CAG +   2 GCT +   2 CTG +    1 TGC      =   11 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    1 TCG      =    1 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   2 CCG +    0 CGC      =    2 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7291432|gb|AE003458.1|AE003458 Drosophila melanogaster genomic scaffold 142000013386038 section 7 of 15, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    58924  GCT *  7    20/21     GCT GCT GCT ACT GCT GCT GCT
    67323  AGC *  7    19/21     AGC AGC AGC AGC AGC AGA AGG
    71154  AAT *  7    20/21     AAT AAT AAT AAT AAT AAT AAA
   101718  AGC *  7    20/21     AGC AGC AGC AGC AGC AGC AAC
   149582  CTG *  7    19/21     CTG CTG CTG CTG CTG CTT GTG
   161884  TTA * 10    27/30     TTA TTA TTA TTA TTA TTA TTA TTT TTA TAT
   171979  GCA *  8    22/24     GCA CCA GCA GCA GCA GGA GCA GCA
   174181  CAT *  7    20/21     CAT CAT CAT CAT CAT CGT CAT
   179103  CAC *  7    19/21     CAC CAC CGC CAC CAC TAC CAC
   179681  TCA *  7    19/21     TCA TCA TCG TCA TCA TCA TCG
   216306  TGT *  7    19/21     TGT TGT TGT TGC TTT TGT TGT
   216533  TTG *  7    19/21     TTG TTG TTG TTG TTG TTT TTC
   228096  CTC *  7    19/21     CTC CTC ATC CTC CAC CTC CTC
   231553  GGA *  7    19/21     GGA GGA GGA GGA GCA GGA GGC
   283048  TGG *  8    22/24     TGG TGG TGG CGG TGG TGG TGG TAG
   284261  CAC * 14    38/42     CAC CAC CAC TAC CAC TAC CAC CAC CAC CAC CAC CAC CAT CAT
   299674  TCA *  7    19/21     TCA TCA TCA TCA CCA CCA TCA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       300917 
 Total number of repeats detected..............       17 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TTA      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAC      2       1       0       1       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   1 AAT +    0 ATA +   0 TAA +   0 ATT +   1 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   1 TTG +    1 TGT      =    2 
   0 ATG +    0 TGA +   0 GAT +   1 CAT +   0 ATC +    2 TCA      =    3 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    1 GGA +   0 GAG +   0 CCT +   1 CTC +    0 TCC      =    2 
   2 AGC +    1 GCA +   0 CAG +   1 GCT +   1 CTG +    0 TGC      =    5 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   2 CAC +   0 GGT +   0 GTG +    1 TGG      =    3 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7291400|gb|AE003457.1|AE003457 Drosophila melanogaster genomic scaffold 142000013386038 section 6 of 15, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    28474  ACA *  7    19/21     ACA ACA ACA GCA ACA ACA AGA
    37841  GAT *  7    19/21     GAT GAT GAT GAC GAT GAT GAG
    54817  TGC *  8    22/24     TGC TGC TGC TGC TGT TGC TGC TGA
   123048  GTT * 11    31/33     GTT GTG GTT GTT GTT GTT GTT GTA GTT GTT GTT
   209430  TGC *  7    19/21     TGC TGG TGC TGA TGC TGC TGC
   210531  CTG * 11    30/33     CTG CTG CTT CTG CTG CTG CTG CTG CTT CTG CCG
   211081  TCA * 14    38/42     TCA TCA TCG TCA CCA TCA TCA TCA TCA TCA GCA TCA TCA CCA
   211317  GCT *  8    22/24     GCT GCT GCT GCT GCT GCT GCA GCA
   212866  TGC *  8    22/24     TGC TGC TGC TGC TGC TGC TAC TGT
   213411  TCC *  7    19/21     TCC ACC CCC TCC TCC TCC TCC
   214529  GCA *  7    19/21     GCA GCT GGA GCA GCA GCA GCA
   223596  GCT *  7    19/21     GCT GCT GCT TCT GCT GCT GCA
   224798  ACA *  7    19/21     ACA ACA ACA ACA GCT ACA ACA
   228847  AGC *  8    22/24     AGC AGC AGC AGC AGC AGG AGC AGT
   230525  CAG *  7    19/21     CAG CAG CAG CAG CAA CGG CAG
   232519  CTG *  9    25/27     CTG CTG CTA CTG CTG CTG CTG CTG TTG
   233930  CAT *  7    19/21     CAT CAT TAT CAT CAT CAT CAG
   240767  ACC * 10    27/30     ACC ACC GCC ACC ACC ACC ACC ACC ACT AAC
   246879  GTT *  8    22/24     GTT GTT GTT GTT ATT ATT GTT GTT
   246913  TTG *  7    19/21     TTG TTA TTA TTG TTG TTG TTG
   256249  TTG *  7    19/21     TTG CTG CTG TTG TTG TTG TTG
   264261  CGA *  8    22/24     CGA CGA CGA CGA CGA CGA CGA CCC
   264382  CAT *  8    22/24     CAT CAT CAG CAT CAT CAT CCT CAT
   267038  GAG *  9    25/27     GAG GAG AAG GAG AAG GAG GAG GAG GAG
   276204  CTG *  9    25/27     CTG CTG CTG TTG CTG CTG CTG CTG TTG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       290792 
 Total number of repeats detected..............       25 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  ACC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TTG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TGC      3       3       0       0       0       0       0       0       0       0       0       0       0   
  TCA      1       0       0       1       0       0       0       0       0       0       0       0       0   
  TCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      2       1       1       0       0       0       0       0       0       0       0       0       0   
  GCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      3       2       1       0       0       0       0       0       0       0       0       0       0   
  CGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    2 ACA +   0 CAA +   2 GTT +   2 TTG +    0 TGT      =    6 
   0 ATG +    0 TGA +   1 GAT +   2 CAT +   0 ATC +    1 TCA      =    4 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   1 GAG +   0 CCT +   0 CTC +    1 TCC      =    2 
   1 AGC +    1 GCA +   1 CAG +   2 GCT +   3 CTG +    3 TGC      =   11 
   0 ACG +    1 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    1 
   1 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7291355|gb|AE003456.1|AE003456 Drosophila melanogaster genomic scaffold 142000013386038 section 5 of 15, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    13493  CCG *  7    19/21     CCG CCG CCT CCT CCG CCG CCG
    29651  AAC *  9    25/27     AAC AAC AAC AAC AAC AAC AAC AGC AGC
    53439  TGA *  7    20/21     TGA TGA TGA TGA TGA TGC TGA
    58153  AGC *  7    19/21     AGC GGC AGC AAC AGC AGC AGC
   100938  TGC *  7    19/21     TGC TGC TGC TGC CAC TGC TGC
   101123  GTT *  7    19/21     GTT GTT GTT GTG GTT GTA GTT
   153475  ATG *  8    22/24     ATG ATG AAG ATA ATG ATG ATG ATG
   165595  GCA *  8    22/24     GCA GCA GCA GCA GCA GTA GCA ACA
   165622  GCA * 11    30/33     GCA GCA GCA GCA GCA GCA GTA GCA GCA ACA TCA
   168010  CAG * 10    27/30     CAG CAA CAG CCG CAG CAG CAG CAG CAG CAT
   168181  GCA *  8    22/24     GCA GCA GAA GCA ACA GCA GCA GCA
   171235  GCA * 10    27/30     GCA GCA ACA GCA ACA GCA GCA GCA GCA ACA
   171298  CAG *  7    19/21     CAG CAG CAA CAG CAG CAG CAA
   171526  GCA *  7    19/21     GCA GCA GCA ACA ACA GCA GCA
   171550  GCA *  7    19/21     GCA ACA CCA GCA GCA GCA GCA
   171805  GCA *  7    20/21     GCA ACA GCA GCA GCA GCA GCA
   173135  GCA *  7    19/21     GCA ACA GCA ACA GCA GCA GCA
   176102  TCA *  8    22/24     TCA TCA TCA TCA GCA CCA TCA TCA
   177775  CAG *  8    23/24     CAG CAG CAG CAG CAG CAG CAG CAA
   201450  TGC *  8    22/24     TGC TGC TGC TGC TGC TGC TTC TGT
   252536  CAA *  7    19/21     CAA CAG CAA CAA CAA CAG CAA
   256064  GTT *  7    19/21     GTT TTT GTT ATT GTT GTT GTT
   260920  AGC * 10    27/30     AGC AGG AGC AGC AGC AGC AGC AGG AGC AGT
   271269  GCA * 25    68/75     GCA GCA GCA GCA TCA CCA GCA GCA GCA GCA ACA GCA GCA GCA GCA ACA GCA ACA GCA CCA GCA GCA GCA GCA ACA
   274813  CAA *  7    20/21     CAA CAA CAA CAA CAA CAA CTA
   277346  TTG *  7    19/21     TTG TTG TTG TTG CTG TTG TTT
   291840  GGC *  8    22/24     GGC GGC GGC GGC CGC TGC GGC GGC
-----------------------------------------------------------------------------------------
 Total sequence length.........................       298464 
 Total number of repeats detected..............       27 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      2       1       1       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TCA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      9       6       2       0       0       0       0       1       0       0       0       0       0   
  CAA      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAG      3       2       1       0       0       0       0       0       0       0       0       0       0   
  CCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    0 ACA +   2 CAA +   2 GTT +   1 TTG +    0 TGT      =    6 
   1 ATG +    1 TGA +   0 GAT +   0 CAT +   0 ATC +    1 TCA      =    3 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    0 
   2 AGC +    9 GCA +   3 CAG +   0 GCT +   0 CTG +    2 TGC      =   16 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    0 
   1 GGC +    0 GCG +   0 CGG +   0 GCC +   1 CCG +    0 CGC      =    2 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7291326|gb|AE003455.1|AE003455 Drosophila melanogaster genomic scaffold 142000013386038 section 4 of 15, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     5261  CTC *  7    19/21     CTC CTC CTC CTC CTC CTC TTT
     8176  CTC *  7    20/21     CTC GTC CTC CTC CTC CTC CTC
    15489  TTA *  7    19/21     TTA TTA TTA TTA TTA TTT TAA
    34268  GAT *  8    23/24     GAT GAT GAT GAT GAT GAT GAT GAA
    47170  ATG * 10    27/30     ATG TTG ATG ACG ATG ATG ATG ATG ATG ATT
    49454  AGC *  7    19/21     AGC AGC AAC AAC AGC AGC AGC
    49510  CAG *  7    19/21     CAG CAG CAA CAG CAG CAG CAA
   103676  GAG *  7    19/21     GAG GAG GAG CAG GAG GAG GAT
   120568  AGC *  7    19/21     AGC AGC AAC AAC AGC AGC AGC
   120624  CAG *  7    19/21     CAG CAG CAA CAG CAG CAG CAA
   153739  ATA *  9    26/27     ATA ATA ATA ATA ATA ATA ATA ATA ACA
   163678  CCT * 11    30/33     CCT CCT CCT CCT CCT CCT CCT CCT CCT ACA GCT
   166492  AAC * 10    28/30     AAC AAC AAC AAC AAC AAC AAC AAC AGC AGC
   189761  CAT *  7    19/21     CAT TGT CAT CAT CAT CAT CAT
   242656  AGC *  7    19/21     AGC AGG TGC AGC AGC AGC AGC
   255246  ACC * 10    27/30     ACC ACC TCC ACC TCC ACC ACC ACC ACC ACA
   256879  ACA *  7    19/21     ACA GCA ACA ACA ACA ACA AAA
   269441  GCC *  7    19/21     GCC GCC GCC GCC GCC GCC GTT
-----------------------------------------------------------------------------------------
 Total sequence length.........................       302502 
 Total number of repeats detected..............       18 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  ATA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  AGC      3       3       0       0       0       0       0       0       0       0       0       0       0   
  ACA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ACC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CTC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CCT      1       0       1       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    1 ATA +   0 TAA +   0 ATT +   1 TTA +    0 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    1 ACA +   0 CAA +   0 GTT +   0 TTG +    0 TGT      =    2 
   1 ATG +    0 TGA +   1 GAT +   1 CAT +   0 ATC +    0 TCA      =    3 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   1 GAG +   1 CCT +   2 CTC +    0 TCC      =    4 
   3 AGC +    0 GCA +   2 CAG +   0 GCT +   0 CTG +    0 TGC      =    5 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   1 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   1 GCC +   0 CCG +    0 CGC      =    1 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7291292|gb|AE003454.1|AE003454 Drosophila melanogaster genomic scaffold 142000013386038 section 3 of 15, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    14879  CAC *  7    19/21     CAC CGC AAC CAC CAC CAC CAC
    14900  CAT * 11    30/33     CAT CAT CAT CAT CAT CAT CCT CAT CTT CAT CGT
    32913  GAA *  8    22/24     GAA GCT GAA GAA GAA GAA GAA GAA
    51208  CAA *  7    19/21     CAA TAA CAA CAA CAA CAG CAA
    59678  TGC *  9    25/27     TGC TGC TGC TCC TGC TGC TGC TGT TGC
    61196  GTT *  8    22/24     GTT GTT GTT GCT GTT GTT GTT GTG
    68778  ATG * 10    27/30     ATG ATG ATG ATG ATG ACG ATG ATG CTG ATT
    71236  GAT *  8    22/24     GAT GAT TAT GAT GAT GAT GAT TAT
    76607  CAG *  7    19/21     CAG AAA CAG CAG CAG CAG CAG
    90362  CAA *  8    22/24     CAA CAA CAA GAA CAA CAA GAA CAA
    93071  GCA *  7    19/21     GCA GCG GCA GCA GCA GCT GCA
   113684  TTG *  7    19/21     TTG TCG TTG TTG TTC TTG TTG
   114646  TGT * 10    28/30     TGT TGT TGT TCT TGT TGT TGT TGT TGT TGA
   119215  CAT *  8    23/24     CAT CAT CAT CAT CAT CAT CAG CAT
   126003  CAA *  8    22/24     CAA CTA GAA CAA CAA CAA CAA CAA
   142182  TCC * 11    30/33     TCC TCC TCC TTC TCC TCC TCC TCC TCC TTC TTC
   156422  CAA *  8    22/24     CAA CAA CAA CAA CAA CAA CAG CAG
   158104  AAC *  8    23/24     AAC AAC AAC AAC AAC AAC AGC AAC
   164755  CTC *  8    22/24     CTC CTC CTC CTG CTC CAC CTC CTC
   169527  CAA *  7    19/21     CAA CAA CAA CAA CAA CAT AAA
   174226  CAT * 11    31/33     CAT CAT CAT CAT CAC CAT CAT CAG CAT CAT CAT
   177402  AGC * 10    27/30     AGC AGC AGC AGC AGC AGC AGC AAC AAC AAC
   177979  GCA * 11    30/33     GCA GCA GCA GCA GCA GCA GCC GCA GTA GTA GCA
   179132  ACG *  8    22/24     ACG ATG ACG ACG ACG ACG ACG ACT
   182381  AGC * 10    28/30     AGC AGC AGC AGC AGC AGC AGA AGC AGC GGC
   184689  CAT *  7    19/21     CAT CAG CAT CAG CAT CAT CAT
   186897  CAG * 12    33/36     CAG CCG CAG CAG CAG CAG CAG CAG CAG CAG CAA CAT
   191079  GCA *  7    19/21     GCA GAA GCA GCA GCA GCA GCG
   204192  GAT *  7    19/21     GAT GGC GAT GAT GAT GAT GAT
   261184  GCA *  7    19/21     GCA ACA GCA GCA GCA GCA GCT
   261209  CAG * 15    41/45     CAG CAG CAG CAG CAG CAG CAG CAA CAA CAA CAG CAG CAG CAG CAA
   297993  GCT *  9    25/27     GCT GCT GTT GCT GCT GCT GCT GCT GAT
   298114  CTG *  8    22/24     CTG CTG TTG CTG CTG CTG GTG CTG
   298411  TAA *  7    20/21     TAA TAG TAA TAA TAA TAA TAA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       300941 
 Total number of repeats detected..............       34 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  ATG      1       0       1       0       0       0       0       0       0       0       0       0       0   
  AGC      2       0       2       0       0       0       0       0       0       0       0       0       0   
  ACG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       0       1       0       0       0       0       0       0       0       0       0       0   
  TGC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCC      1       0       1       0       0       0       0       0       0       0       0       0       0   
  GAA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  GTT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      4       3       1       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAA      5       5       0       0       0       0       0       0       0       0       0       0       0   
  CAT      4       2       2       0       0       0       0       0       0       0       0       0       0   
  CAG      3       1       1       1       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   1 TAA +   0 ATT +   0 TTA +    0 TAT      =    1 
   0 AAG +    0 AGA +   1 GAA +   0 CTT +   0 TTC +    0 TCT      =    1 
   1 AAC +    0 ACA +   5 CAA +   1 GTT +   1 TTG +    1 TGT      =    9 
   1 ATG +    0 TGA +   2 GAT +   4 CAT +   0 ATC +    0 TCA      =    7 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   1 CTC +    1 TCC      =    2 
   2 AGC +    4 GCA +   3 CAG +   1 GCT +   1 CTG +    1 TGC      =   12 
   1 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    1 
   0 ACC +    0 CCA +   1 CAC +   0 GGT +   0 GTG +    0 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7291238|gb|AE003453.1|AE003453 Drosophila melanogaster genomic scaffold 142000013386038 section 2 of 15, complete sequence
 
 Position  Repeat     Coverage   Repeat 

     8329  CCG *  7    19/21     CCG CCG CCG CCG CCA CCG CCT
     9334  TCC *  7    19/21     TCC TCG TCC TCC TCC GCC TCC
     9374  CCG *  7    19/21     CCG CCG CCG CCA CCG CCG CCA
    51014  TGC * 14    39/42     TGC TGC TGT TGC TGC TGC TGC TGC TGC TGT TGC TGC TGC AGC
    61464  CGA *  7    19/21     CGA GGA CGA CGA CGA CGA TGA
    61494  CTG * 10    27/30     CTG CTG CTG CTG CTG CTG CTG CTG TTG GCG
    61746  CTG *  7    19/21     CTG CTG CTG ATG CTG CTG GTG
    61792  TGC * 11    30/33     TGC TGC TGC TGA TGC TGC TGC TGC TGA TGT TGC
    61837  TGC *  7    19/21     TGC TGC TGT TGC TGA TGC TGC
    71899  AGC *  7    19/21     AGC AAC AGA AGC AGC AGC AGC
   121302  CAT *  7    19/21     CAT AAT CAA CAT CAT CAT CAT
   122378  CTG *  8    22/24     CTG CTG CTA CTG CTA CTG CTG CTG
   123081  AAC *  8    22/24     AAC AAC AAC AAC AAG AAC AAC AAA
   126227  TTC *  7    19/21     TTC TTC TTG GTC TTC TTC TTC
   134113  GCT * 17    48/51     GCT GCC GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCC GCT GCT GCT TCT
   134644  TGC *  8    22/24     TGC TGC TGC TGC TGT TGT TGC TGC
   134746  TGC *  8    22/24     TGC AGT TGC TGC TGC TGC TGC TGC
   134821  TGC * 11    30/33     TGC TGC TGC TGT TGC TGC TGC TGC TGC TGA TGA
   149869  AGC *  7    19/21     AGC TGG AGC AGC AGC AGC AGC
   151021  CAA *  8    23/24     CAA CAG CAA CAA CAA CAA CAA CAA
   163165  CGA * 10    28/30     CGA TGA CGA CGA CGA CGA CGA CGA CGA CGC
   184035  GCA *  9    26/27     GCA GCA GCA GCA GCA GCA ACA GCA GCA
   184346  GTA *  7    19/21     GTA GTA GTA GTA GTA GTA TAA
   221908  CAA *  7    20/21     CAA CAA CAA CAA CAA CAA CCA
   222103  TGG *  7    20/21     TGG TGG TGG TGG TGG AGG TGG
   237759  GCA *  7    19/21     GCA ACG GCA GCA GCA GCA GCA
   251828  CAG * 14    38/42     CAG CAG CAA CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG GTT
   253202  CAG *  9    25/27     CAG CAG CAA CAG CAG CAG CAG CAG CAA
   253627  GCA *  9    25/27     GCA GCA GCA ACA GCA GCA GCA TCA GCA
   254158  GCA *  8    23/24     GCA GCA GCA ACA GCA GCA GCA GCA
   254269  GCA * 10    27/30     GCA GCA GCA ACA GCA GCA GCA GCA ACA ACA
   269435  GCT *  8    22/24     GCT GCT GCT GCT CCT GCT GCA GCT
   277719  CAA *  8    22/24     CAA CAA CAA TAA CAA CAG CAA CAA
   277865  TCT *  7    19/21     TCT TCT TCT TCT TCT TCC TCC
   283494  CAT *  7    19/21     CAT CAT CAT CAT CAT CAT CGG
   291790  TGC * 10    27/30     TGC TTC TAC TGC TGC TGC TGC TGC TGC TGG
-----------------------------------------------------------------------------------------
 Total sequence length.........................       302547 
 Total number of repeats detected..............       36 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  AAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  AGC      2       2       0       0       0       0       0       0       0       0       0       0       0   
  TTC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      7       3       3       1       0       0       0       0       0       0       0       0       0   
  TCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GTA      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      5       4       1       0       0       0       0       0       0       0       0       0       0   
  GCT      2       1       0       0       1       0       0       0       0       0       0       0       0   
  CAA      3       3       0       0       0       0       0       0       0       0       0       0       0   
  CAT      2       2       0       0       0       0       0       0       0       0       0       0       0   
  CAG      2       1       0       1       0       0       0       0       0       0       0       0       0   
  CTG      3       2       1       0       0       0       0       0       0       0       0       0       0   
  CGA      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CCG      2       2       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   0 ATT +   0 TTA +    0 TAT      =    0 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   1 TTC +    1 TCT      =    2 
   1 AAC +    0 ACA +   3 CAA +   0 GTT +   0 TTG +    0 TGT      =    4 
   0 ATG +    0 TGA +   0 GAT +   2 CAT +   0 ATC +    0 TCA      =    2 
   0 AGT +    1 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    1 
   0 AGG +    0 GGA +   0 GAG +   0 CCT +   0 CTC +    1 TCC      =    1 
   2 AGC +    5 GCA +   2 CAG +   2 GCT +   3 CTG +    7 TGC      =   21 
   0 ACG +    2 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    2 
   0 ACC +    0 CCA +   0 CAC +   0 GGT +   0 GTG +    1 TGG      =    1 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   2 CCG +    0 CGC      =    2 
-----------------------------------------------------------------------------------------

 

Genomic sequence
gi|7291191|gb|AE003452.1|AE003452 Drosophila melanogaster genomic scaffold 142000013386038 section 1 of 15, complete sequence
 
 Position  Repeat     Coverage   Repeat 

    11089  CAC *  7    19/21     CAC GAC TAC CAC CAC CAC CAC
    11147  CCA *  8    23/24     CCA CCA CCA CCA CCA CCA CCA CCC
    11195  CCA * 12    33/36     CCA CCC CCA CCA CCA CCA CCA CCA CTA CCA CCA CCG
    23264  ATT *  7    19/21     ATT ATT ATT ATG ATT TTT ATT
    33935  GCA *  7    19/21     GCA GCA ACA TCA GCA GCA GCA
    58488  TGC *  7    19/21     TGC TGC AGC TGC TGC GGC TGC
    91519  GCT *  7    19/21     GCT CCT GCT GCC GCT GCT GCT
    95286  CAG *  7    19/21     CAG AAG CAG CAG CAG GAG CAG
   108506  TGT *  7    19/21     TGT TGT TGT TGT TGT TAT TAT
   129141  TCC *  7    20/21     TCC TCC TCC TCC TCC TCC TTC
   140975  CAG *  8    22/24     CAG CAG CAG CAG CAA CAG CAA CAG
   153832  GCC *  7    19/21     GCC ACC GCC ACC GCC GCC GCC
   160063  TAT *  7    21/21     TAT TAT TAT TAT TAT TAT TAT
   176312  TGC *  7    21/21     TGC TGC TGC TGC TGC TGC TGC
   176354  TGC *  7    20/21     TGC TGC TGC TGC TGC TGA TGC
   199464  GAG *  7    19/21     GAG GAG GAG GAC GAC GAG GAG
   219956  CAG *  7    19/21     CAG CAG CAA CAG TAG CAG CAG
   220452  GCA *  7    21/21     GCA GCA GCA GCA GCA GCA GCA
   222521  CAG *  8    22/24     CAG CAA CAA CAG CAG CAG CAG CAG
   222551  CAG *  8    22/24     CAG CAG CAG CAG CCC CAG CAG CAG
   222793  GCA *  7    19/21     GCA GCA GCT TCA GCA GCA GCA
   222890  CAG * 13    37/39     CAG CAG CAG CAG CAG CAA CAA CAG CAG CAG CAG CAG CAG
   283294  CCG *  7    19/21     CCG CCG CCG CCG CCT CCG CCA
-----------------------------------------------------------------------------------------
 Total sequence length.........................       305505 
 Total number of repeats detected..............       23 
-----------------------------------------------------------------------------------------------
 Minimum Tri-Nucleotide repeat units...........       7 
 Maximum mismatch allowed......................       10%
-----------------------------------------------------------------------------------------------

 Length distribution of Tri-Nucleotide Repeats  

                  Number of repeated units....................> 
        Total     7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39    >=40 

  ATT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TAT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  TGC      3       3       0       0       0       0       0       0       0       0       0       0       0   
  TCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GAG      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCA      3       3       0       0       0       0       0       0       0       0       0       0       0   
  GCT      1       1       0       0       0       0       0       0       0       0       0       0       0   
  GCC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CAG      6       5       0       1       0       0       0       0       0       0       0       0       0   
  CAC      1       1       0       0       0       0       0       0       0       0       0       0       0   
  CCA      2       1       1       0       0       0       0       0       0       0       0       0       0   
  CCG      1       1       0       0       0       0       0       0       0       0       0       0       0   
--------------------------------------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes 
 
   0 AAT +    0 ATA +   0 TAA +   1 ATT +   0 TTA +    1 TAT      =    2 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   0 AAC +    0 ACA +   0 CAA +   0 GTT +   0 TTG +    1 TGT      =    1 
   0 ATG +    0 TGA +   0 GAT +   0 CAT +   0 ATC +    0 TCA      =    0 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    0 GGA +   1 GAG +   0 CCT +   0 CTC +    1 TCC      =    2 
   0 AGC +    3 GCA +   6 CAG +   1 GCT +   0 CTG +    3 TGC      =   13 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    0 TCG      =    0 
   0 ACC +    2 CCA +   1 CAC +   0 GGT +   0 GTG +    0 TGG      =    3 
   0 GGC +    0 GCG +   0 CGG +   1 GCC +   1 CCG +    0 CGC      =    2 
-----------------------------------------------------------------------------------------

-----------------------------------------------------------------------------------------
 

Tri-nucleotide repeats in Drosophila melanogaster Chromosome-Arm-2R Genomic Scaffolds
Minimum tri-nucleotide repeating units = 7 (allowing maximum of 10% mismatch)
Total 129 sequences searched with a total of 21068156 bp length
Total 1664 repeats covering 38201 / 41622 base pairs
Length distribution of all tri-nucleotide repeats 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
no. of repeat-units    7    8    9   10   11   12   13   14   15   16   17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   33   34   35   36   37   38   39  >=40 

total repeats        810  426   84  135   93   41   13   23   13    2    5   12    1    1    2    0    0    0    3    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
 Length distribution of all tri-nucleotide repeats 

 No. of repeat units>   7-9    10-12   13-15   16-18   19-21   22-24   25-27   28-30   31-33   34-36   37-39   >=40 

 total repeats-->     1320     269      49      19       4       0       3       0       0       0       0       0   

       AAT              23       3       2       0       0       0       0       0       0       0       0       0   
       AAG               9       0       0       0       0       0       0       0       0       0       0       0   
       AAC              27       4       1       0       0       0       0       0       0       0       0       0   
       ATA              21       4       0       6       0       0       0       0       0       0       0       0   
       ATT              13       3       1       1       0       0       0       0       0       0       0       0   
       ATG              13       6       0       0       0       0       0       0       0       0       0       0   
       ATC              12       1       2       0       0       0       0       0       0       0       0       0   
       AGA               4       0       0       0       0       0       0       0       0       0       0       0   
       AGT               3       1       0       0       0       0       0       0       0       0       0       0   
       AGG              10       3       0       0       0       0       0       0       0       0       0       0   
       AGC              48      16       1       0       0       0       0       0       0       0       0       0   
       ACA              26       8       0       0       0       0       0       0       0       0       0       0   
       ACT               1       1       0       0       0       0       0       0       0       0       0       0   
       ACG               8       0       0       0       0       0       0       0       0       0       0       0   
       ACC              11       2       0       0       0       0       0       0       0       0       0       0   
       TAA              11       3       0       0       0       0       0       0       0       0       0       0   
       TAT              22       1       0       4       0       0       0       0       0       0       0       0   
       TAG               3       1       0       0       0       0       0       0       0       0       0       0   
       TAC               5       0       0       0       0       0       0       0       0       0       0       0   
       TTA              21       3       1       0       0       0       0       0       0       0       0       0   
       TTG              32       2       1       0       1       0       0       0       0       0       0       0   
       TTC               6       0       0       0       0       0       0       0       0       0       0       0   
       TGA              18       2       0       0       0       0       0       0       0       0       0       0   
       TGT              38       4       3       0       0       0       0       0       0       0       0       0   
       TGG              16       6       0       0       0       0       0       0       0       0       0       0   
       TGC             151      38      12       2       0       0       1       0       0       0       0       0   
       TCA              25       2       1       0       0       0       0       0       0       0       0       0   
       TCT               3       0       0       0       0       0       0       0       0       0       0       0   
       TCG               4       0       1       0       0       0       0       0       0       0       0       0   
       TCC              17       3       0       0       0       0       0       0       0       0       0       0   
       GAA               6       0       0       0       0       0       0       0       0       0       0       0   
       GAT              27       5       2       0       0       0       0       0       0       0       0       0   
       GAG              21       3       0       0       0       0       0       0       0       0       0       0   
       GAC              11       0       0       0       0       0       0       0       0       0       0       0   
       GTA               4       0       0       0       0       0       0       0       0       0       0       0   
       GTT              34      11       0       0       0       0       0       0       0       0       0       0   
       GTG               8       0       1       0       0       0       0       0       0       0       0       0   
       GTC               5       1       0       0       0       0       0       0       0       0       0       0   
       GGA              15       4       1       0       0       0       0       0       0       0       0       0   
       GGT              16       2       0       0       0       0       0       0       0       0       0       0   
       GGC              11       1       0       0       0       0       0       0       0       0       0       0   
       GCA             100      25       2       0       0       0       2       0       0       0       0       0   
       GCT              87      15       2       1       1       0       0       0       0       0       0       0   
       GCG               6       0       0       0       0       0       0       0       0       0       0       0   
       GCC               8       1       0       0       0       0       0       0       0       0       0       0   
       CAA              57       9       2       0       0       0       0       0       0       0       0       0   
       CAT              34       4       1       0       0       0       0       0       0       0       0       0   
       CAG             101      29       9       3       2       0       0       0       0       0       0       0   
       CAC              15       1       1       1       0       0       0       0       0       0       0       0   
       CTT              10       1       0       0       0       0       0       0       0       0       0       0   
       CTG              66      22       2       1       0       0       0       0       0       0       0       0   
       CTC              24       5       0       0       0       0       0       0       0       0       0       0   
       CGA               5       1       0       0       0       0       0       0       0       0       0       0   
       CGT               3       2       0       0       0       0       0       0       0       0       0       0   
       CGG               5       0       0       0       0       0       0       0       0       0       0       0   
       CGC               1       1       0       0       0       0       0       0       0       0       0       0   
       CCA              16       5       0       0       0       0       0       0       0       0       0       0   
       CCT              13       4       0       0       0       0       0       0       0       0       0       0   
       CCG              10       0       0       0       0       0       0       0       0       0       0       0   
-----------------------------------------------------------------------------------------------------------------------
-----------------------------------------------------------------------------------------

 Frequency distribution of different tri-nucleotide repeat classes in all sequences 
 
  28 AAT +   31 ATA +  14 TAA +  18 ATT +  25 TTA +   27 TAT      =  143 
   9 AAG +    4 AGA +   6 GAA +  11 CTT +   6 TTC +    3 TCT      =   39 
  32 AAC +   34 ACA +  68 CAA +  45 GTT +  36 TTG +   45 TGT      =  260 
  19 ATG +   20 TGA +  34 GAT +  39 CAT +  15 ATC +   28 TCA      =  155 
   4 AGT +    4 GTA +   4 TAG +   2 ACT +   0 CTA +    5 TAC      =   19 
  13 AGG +   20 GGA +  24 GAG +  17 CCT +  29 CTC +   20 TCC      =  123 
  65 AGC +  129 GCA + 144 CAG + 106 GCT +  91 CTG +  204 TGC      =  739 
   8 ACG +    6 CGA +  11 GAC +   5 CGT +   6 GTC +    5 TCG      =   41 
  13 ACC +   21 CCA +  18 CAC +  18 GGT +   9 GTG +   22 TGG      =  101 
  12 GGC +    6 GCG +   5 CGG +   9 GCC +  10 CCG +    2 CGC      =   44 
-----------------------------------------------------------------------------------------

 Frequency distribution of repeats longer than 40 bp 
 
   2 AAT +    6 ATA +   0 TAA +   2 ATT +   0 TTA +    4 TAT      =   14 
   0 AAG +    0 AGA +   0 GAA +   0 CTT +   0 TTC +    0 TCT      =    0 
   1 AAC +    0 ACA +   1 CAA +   0 GTT +   2 TTG +    1 TGT      =    5 
   0 ATG +    0 TGA +   2 GAT +   1 CAT +   0 ATC +    1 TCA      =    4 
   0 AGT +    0 GTA +   0 TAG +   0 ACT +   0 CTA +    0 TAC      =    0 
   0 AGG +    1 GGA +   0 GAG +   0 CCT +   0 CTC +    0 TCC      =    1 
   0 AGC +    3 GCA +  13 CAG +   4 GCT +   2 CTG +   12 TGC      =   34 
   0 ACG +    0 CGA +   0 GAC +   0 CGT +   0 GTC +    1 TCG      =    1 
   0 ACC +    0 CCA +   2 CAC +   0 GGT +   1 GTG +    0 TGG      =    3 
   0 GGC +    0 GCG +   0 CGG +   0 GCC +   0 CCG +    0 CGC      =    0 
-----------------------------------------------------------------------------------------

 Total repeats longer than 40 bp = 62 
-----------------------------------------------------------------------------------------

 
Sequence-wise distribution of tri-nucleotide repeats ----------------------------------------------------------------------------------------- Sequence Sequence-length Total-repeats gi|7289019|gb|AE0029 3612 0 gi|7289079|gb|AE0030 19141 0 gi|7289475|gb|AE0030 29176 0 gi|7289453|gb|AE0032 7951 0 gi|7289112|gb|AE0033 43718 1 gi|7289300|gb|AE0025 11918 0 gi|7289520|gb|AE0026 2655 0 gi|7289039|gb|AE0026 12312 0 gi|7288934|gb|AE0026 13170 1 gi|7289090|gb|AE0026 24153 0 gi|7288943|gb|AE0026 32417 0 gi|7288917|gb|AE0027 1893 0 gi|7289853|gb|AE0027 107231 1 gi|7289862|gb|AE0027 62674 0 gi|7289517|gb|AE0027 4416 0 gi|7289299|gb|AE0027 32269 0 gi|7289417|gb|AE0028 3603 0 gi|7289767|gb|AE0028 16864 0 gi|7288929|gb|AE0029 3000 0 gi|7289383|gb|AE0029 21261 0 gi|7288949|gb|AE0029 1824 0 gi|7288953|gb|AE0029 14708 0 gi|7289359|gb|AE0029 19947 0 gi|7289183|gb|AE0029 3372 0 gi|7289437|gb|AE0029 43487 1 gi|7289322|gb|AE0029 19750 0 gi|7289200|gb|AE0029 26448 0 gi|7289372|gb|AE0029 13643 0 gi|7289348|gb|AE0030 17194 0 gi|7289338|gb|AE0030 26058 1 gi|7289553|gb|AE0030 1073 0 gi|7288979|gb|AE0030 59055 1 gi|7289342|gb|AE0030 29994 0 gi|7289208|gb|AE0030 1546 0 gi|7289130|gb|AE0030 55603 2 gi|7289411|gb|AE0025 1058 0 gi|7289416|gb|AE0026 1239 1 gi|7289156|gb|AE0026 4403 0 gi|7289408|gb|AE0026 1527 0 gi|7289468|gb|AE0030 1019 0 gi|7289446|gb|AE0030 22669 0 gi|7289145|gb|AE0030 22016 1 gi|7289388|gb|AE0031 1511 0 gi|7289263|gb|AE0027 40796 1 gi|7289785|gb|AE0030 3738 0 gi|7289275|gb|AE0026 2000 0 gi|7289053|gb|AE0027 19182 0 gi|7289057|gb|AE0030 12708 0 gi|7289223|gb|AE0030 38153 0 gi|7316105|gb|AE0027 0 0 gi|7302256|gb|AE0037 128817 0 gi|7302239|gb|AE0037 307228 7 gi|7302231|gb|AE0037 316735 5 gi|7302205|gb|AE0037 296279 5 gi|7302167|gb|AE0037 313072 9 gi|7289017|gb|AE0030 24781 0 gi|7316098|gb|AE0027 0 0 gi|7302304|gb|AE0037 210451 20 gi|7302263|gb|AE0037 298904 12 gi|7316102|gb|AE0027 0 0 gi|7304243|gb|AE0038 252413 11 gi|7304203|gb|AE0038 262082 31 gi|7304160|gb|AE0038 259764 20 gi|7304109|gb|AE0038 261850 18 gi|7304068|gb|AE0038 263411 29 gi|7304040|gb|AE0038 234905 16 gi|7304001|gb|AE0038 253189 20 gi|7303956|gb|AE0038 259860 26 gi|7303908|gb|AE0038 257324 14 gi|7303875|gb|AE0038 265562 33 gi|7303842|gb|AE0038 261713 15 gi|7303794|gb|AE0038 260916 14 gi|7303755|gb|AE0038 261895 27 gi|7303717|gb|AE0038 258492 33 gi|7303677|gb|AE0038 259920 21 gi|7303662|gb|AE0038 261694 38 gi|7303588|gb|AE0038 291089 38 gi|7303570|gb|AE0038 278196 35 gi|7303542|gb|AE0038 249001 23 gi|7303489|gb|AE0038 262740 20 gi|7303437|gb|AE0038 266350 19 gi|7303396|gb|AE0038 290711 23 gi|7303370|gb|AE0038 272870 28 gi|7303326|gb|AE0038 237528 24 gi|7303288|gb|AE0038 264644 32 gi|7303263|gb|AE0038 262257 21 gi|7303233|gb|AE0038 260779 51 gi|7303189|gb|AE0038 240495 32 gi|7303162|gb|AE0038 260713 22 gi|7303119|gb|AE0038 258778 10 gi|7303102|gb|AE0038 257946 31 gi|7303071|gb|AE0038 259379 10 gi|7303048|gb|AE0038 258873 32 gi|7303026|gb|AE0038 260968 30 gi|7302975|gb|AE0038 262173 30 gi|7302923|gb|AE0038 260067 13 gi|7302890|gb|AE0038 268219 14 gi|7302851|gb|AE0038 270307 13 gi|7302807|gb|AE0038 259817 13 gi|7302766|gb|AE0038 282588 36 gi|7302706|gb|AE0038 262401 7 gi|7302679|gb|AE0038 272650 30 gi|7302632|gb|AE0038 267271 44 gi|7302581|gb|AE0037 277015 13 gi|7302535|gb|AE0037 261090 31 gi|7302512|gb|AE0037 287859 30 gi|7302472|gb|AE0037 268420 18 gi|7302434|gb|AE0037 260400 12 gi|7302424|gb|AE0037 261083 8 gi|7302408|gb|AE0037 263693 28 gi|7302377|gb|AE0037 261900 25 gi|7302331|gb|AE0037 260580 19 gi|7288937|gb|AE0030 20167 1 gi|7316096|gb|AE0025 0 0 gi|7291893|gb|AE0034 283099 6 gi|7291836|gb|AE0034 328500 23 gi|7291775|gb|AE0034 306848 18 gi|7291737|gb|AE0034 299975 44 gi|7291637|gb|AE0034 300542 18 gi|7291588|gb|AE0034 298616 28 gi|7291543|gb|AE0034 297907 24 gi|7291495|gb|AE0034 299572 22 gi|7291432|gb|AE0034 300917 17 gi|7291400|gb|AE0034 290792 25 gi|7291355|gb|AE0034 298464 27 gi|7291326|gb|AE0034 302502 18 gi|7291292|gb|AE0034 300941 34 gi|7291238|gb|AE0034 302547 36 gi|7291191|gb|AE0034 305505 23 -----------------------------------------------------------------------------------------

© Division of Biochemical Sciences, National Chemical Laboratory, Pune 411008, INDIA