Di-Nucleotide Repeats in Genomic Sequences
Di-Nucleotide Repeats in
Drosophila melanogaster Chromosome-Arm-2R Genomic Scaffolds
Genomic Sequence:..
gi|7289019|gb|AE002937.1|AE002937 Drosophila melanogaster genomic scaffold 142000013385320, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 3612
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289079|gb|AE003017.1|AE003017 Drosophila melanogaster genomic scaffold 142000013385367, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 19141
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289475|gb|AE003048.1|AE003048 Drosophila melanogaster genomic scaffold 142000013385699, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 29176
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289453|gb|AE003279.1|AE003279 Drosophila melanogaster genomic scaffold 142000013385680, complete sequence
Position Repeat Coverage Repeat
4260 AT * 11 20/22 AT AT AT AT AT AT AT AT AT CT TT
-----------------------------------------------------------------------------------------
Total sequence length......................... 7951
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 0 0 0 0 0 0 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 0 TA = 1
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 0 TG + 0 CA + 0 AC = 0
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289112|gb|AE003322.1|AE003322 Drosophila melanogaster genomic scaffold 142000013385396, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 43718
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289300|gb|AE002594.1|AE002594 Drosophila melanogaster genomic scaffold 142000013385553, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 11918
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289520|gb|AE002621.1|AE002621 Drosophila melanogaster genomic scaffold 142000013385737, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 2655
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289039|gb|AE002630.1|AE002630 Drosophila melanogaster genomic scaffold 142000013385333, complete sequence
Position Repeat Coverage Repeat
6442 AT * 10 18/20 AT AA AT AT AT AT AT GT AT AT
6470 AT * 12 22/24 AT AT AT AT AC AT AT GT AT AT AT AT
6499 TA * 12 22/24 TA TA TG TA TG TA TA TA TA TA TA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 12312
Total number of repeats detected.............. 3
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 1 0 0 0 0 0 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 1 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 1 TA = 3
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 0 TG + 0 CA + 0 AC = 0
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7288934|gb|AE002639.1|AE002639 Drosophila melanogaster genomic scaffold 142000013385246, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 13170
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289090|gb|AE002666.1|AE002666 Drosophila melanogaster genomic scaffold 142000013385377, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 24153
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7288943|gb|AE002691.1|AE002691 Drosophila melanogaster genomic scaffold 142000013385255, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 32417
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7288917|gb|AE002726.1|AE002726 Drosophila melanogaster genomic scaffold 142000013385230, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1893
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289853|gb|AE002751.1|AE002751 Drosophila melanogaster genomic scaffold 142000013386031, complete sequence
Position Repeat Coverage Repeat
3617 TG * 13 24/26 TG TA TG TG TG TG TG TG TG TG TG TG TA
33338 TA * 10 18/20 TA TA TA TA AG TA TA TA TA TA
33384 TA * 11 20/22 TA TA TA TA TA AG TA TA TA TA TA
33434 AT * 12 22/24 AT AT AT AT AT AG GT AT AT AT AT AT
33461 TA * 11 20/22 TA TA TA TA TA AG TA TA TA TA TA
33487 TA * 12 22/24 TA TA TA TA TA AG TA TA TA TA TA TA
33513 TA * 12 22/24 TA TA TA TA TA AG TA TA TA TA TA TA
33539 TA * 12 22/24 TA TA TA TA TA AG TA TA TA TA TA TA
33565 TA * 12 22/24 TA TA TA TA TA AG TA TA TA TA TA TA
33591 TA * 12 22/24 TA TA TA TA TA AG TA TA TA TA TA TA
33617 TA * 12 22/24 TA TA TA TA TA AG TA TA TA TA TA TA
33644 TA * 12 22/24 TA TA TA TA TA AG TA TA TA TA TA TA
33670 TA * 12 22/24 TA TA TA TA TA AG TA TA TA TA TA TA
33696 TA * 12 22/24 TA TA TA TA TA AG TA TA TA TA TA TA
33722 TA * 12 22/24 TA TA TA TA TA AG TA TA TA TA TA TA
33748 TA * 10 18/20 TA TA TA TA TA AG TA TA TA TA
92288 AT * 12 22/24 AT AT AT AT AT AA AT AT AT AA AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 107231
Total number of repeats detected.............. 17
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 14 0 0 0 0 1 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 14 0 0 0 0 1 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 14 TA = 16
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 1 TG + 0 CA + 0 AC = 1
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289862|gb|AE002760.1|AE002760 Drosophila melanogaster genomic scaffold 142000013386034, complete sequence
Position Repeat Coverage Repeat
59529 AT * 10 19/20 AT AT AT AT AT AT CT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 62674
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 0 0 0 0 0 0 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 0 TA = 1
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 0 TG + 0 CA + 0 AC = 0
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289517|gb|AE002761.1|AE002761 Drosophila melanogaster genomic scaffold 142000013385734, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 4416
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289299|gb|AE002770.1|AE002770 Drosophila melanogaster genomic scaffold 142000013385552, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 32269
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289417|gb|AE002806.1|AE002806 Drosophila melanogaster genomic scaffold 142000013385651, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 3603
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289767|gb|AE002892.1|AE002892 Drosophila melanogaster genomic scaffold 142000013385959, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 16864
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7288929|gb|AE002919.1|AE002919 Drosophila melanogaster genomic scaffold 142000013385241, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 3000
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289383|gb|AE002935.1|AE002935 Drosophila melanogaster genomic scaffold 142000013385620, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 21261
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7288949|gb|AE002944.1|AE002944 Drosophila melanogaster genomic scaffold 142000013385261, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1824
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7288953|gb|AE002952.1|AE002952 Drosophila melanogaster genomic scaffold 142000013385263, complete sequence
Position Repeat Coverage Repeat
3583 TC * 10 18/20 TC GC TC TC AC TC TC TC TC TC
-----------------------------------------------------------------------------------------
Total sequence length......................... 14708
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 0 0 0 0 0 0 0 1 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 0 0 0 0 0 0 0 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 0 TA = 0
0 AG + 0 GA + 0 CT + 1 TC = 1
0 GT + 0 TG + 0 CA + 0 AC = 0
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289359|gb|AE002960.1|AE002960 Drosophila melanogaster genomic scaffold 142000013385601, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 19947
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289183|gb|AE002968.1|AE002968 Drosophila melanogaster genomic scaffold 142000013385462, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 3372
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289437|gb|AE002976.1|AE002976 Drosophila melanogaster genomic scaffold 142000013385668, complete sequence
Position Repeat Coverage Repeat
12679 TA * 10 18/20 TA TA TA TA CA TA TG TA TA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 43487
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 1 0 0 0 0 0 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 1 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 1 TA = 1
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 0 TG + 0 CA + 0 AC = 0
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289322|gb|AE002980.1|AE002980 Drosophila melanogaster genomic scaffold 142000013385568, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 19750
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289200|gb|AE002984.1|AE002984 Drosophila melanogaster genomic scaffold 142000013385479, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 26448
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289372|gb|AE002992.1|AE002992 Drosophila melanogaster genomic scaffold 142000013385609, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 13643
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289348|gb|AE003000.1|AE003000 Drosophila melanogaster genomic scaffold 142000013385592, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 17194
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289338|gb|AE003008.1|AE003008 Drosophila melanogaster genomic scaffold 142000013385583, complete sequence
Position Repeat Coverage Repeat
15772 TG * 12 23/24 TG TA TG TG TG TG TG TG TG TG TG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 26058
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 0 0 0 0 0 1 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 0 0 0 0 0 1 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 0 TA = 0
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 1 TG + 0 CA + 0 AC = 1
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289553|gb|AE003016.1|AE003016 Drosophila melanogaster genomic scaffold 142000013385767, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1073
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7288979|gb|AE003024.1|AE003024 Drosophila melanogaster genomic scaffold 142000013385289, complete sequence
Position Repeat Coverage Repeat
4232 TA * 13 24/26 TA TA TT TA TA TA TA TA TA TT TA TA TA
43848 TG * 10 18/20 TG TG TG TG TG TG TG TG TG AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 59055
Total number of repeats detected.............. 2
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 1 0 0 0 0 1 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 1 0 0 0 0 1 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 1 TA = 1
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 1 TG + 0 CA + 0 AC = 1
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289342|gb|AE003032.1|AE003032 Drosophila melanogaster genomic scaffold 142000013385587, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 29994
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289208|gb|AE003035.1|AE003035 Drosophila melanogaster genomic scaffold 142000013385487, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1546
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289130|gb|AE003040.1|AE003040 Drosophila melanogaster genomic scaffold 142000013385414, complete sequence
Position Repeat Coverage Repeat
37763 TA * 12 22/24 TA TA TA TA TA TA TA TA CA AA TA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 55603
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 1 0 0 0 0 0 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 1 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 1 TA = 1
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 0 TG + 0 CA + 0 AC = 0
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289411|gb|AE002589.1|AE002589 Drosophila melanogaster genomic scaffold 142000013385645, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1058
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289416|gb|AE002607.1|AE002607 Drosophila melanogaster genomic scaffold 142000013385650, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1239
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289156|gb|AE002648.1|AE002648 Drosophila melanogaster genomic scaffold 142000013385436, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 4403
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289408|gb|AE002686.1|AE002686 Drosophila melanogaster genomic scaffold 142000013385643, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1527
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289468|gb|AE003001.1|AE003001 Drosophila melanogaster genomic scaffold 142000013385692, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1019
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289446|gb|AE003056.1|AE003056 Drosophila melanogaster genomic scaffold 142000013385676, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 22669
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289145|gb|AE003064.1|AE003064 Drosophila melanogaster genomic scaffold 142000013385425, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 22016
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289388|gb|AE003195.1|AE003195 Drosophila melanogaster genomic scaffold 142000013385624, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1511
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289263|gb|AE002709.1|AE002709 Drosophila melanogaster genomic scaffold 142000013385535, complete sequence
Position Repeat Coverage Repeat
285 TA * 11 20/22 TA CA TA TA TA TA TA TA TA TA CA
8938 TA * 10 18/20 TA TA TA TA TA TA TA AA TA AA
-----------------------------------------------------------------------------------------
Total sequence length......................... 40796
Total number of repeats detected.............. 2
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 2 0 0 0 0 0 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 2 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 2 TA = 2
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 0 TG + 0 CA + 0 AC = 0
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289785|gb|AE003073.1|AE003073 Drosophila melanogaster genomic scaffold 142000013385973, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 3738
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289275|gb|AE002640.1|AE002640 Drosophila melanogaster genomic scaffold 142000013385546, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 2000
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289053|gb|AE002788.1|AE002788 Drosophila melanogaster genomic scaffold 142000013385347, complete sequence
Position Repeat Coverage Repeat
13009 AT * 10 18/20 AT AT AT TT AC AT AT AT AT AT
14004 AT * 10 18/20 AT AT AT AT AT GA AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 19182
Total number of repeats detected.............. 2
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 0 0 0 0 0 0 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 0 TA = 2
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 0 TG + 0 CA + 0 AC = 0
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289057|gb|AE003081.1|AE003081 Drosophila melanogaster genomic scaffold 142000013385349, complete sequence
Position Repeat Coverage Repeat
892 TG * 10 18/20 TG TG TA TG TG TG TG TA TG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 12708
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 0 0 0 0 0 1 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 0 0 0 0 0 1 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 0 TA = 0
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 1 TG + 0 CA + 0 AC = 1
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289223|gb|AE003090.1|AE003090 Drosophila melanogaster genomic scaffold 142000013385502, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 38153
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7316105|gb|AE002769.1|AE002769 Drosophila melanogaster genomic scaffold 142000013386052, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7302256|gb|AE003788.1|AE003788 Drosophila melanogaster genomic scaffold 142000013386052 section 5 of 5, complete sequence
Position Repeat Coverage Repeat
65187 AT * 10 18/20 AT AT AT AT AT AT AA AT AT AA
-----------------------------------------------------------------------------------------
Total sequence length......................... 128817
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 0 0 0 0 0 0 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 0 TA = 1
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 0 TG + 0 CA + 0 AC = 0
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7302239|gb|AE003787.1|AE003787 Drosophila melanogaster genomic scaffold 142000013386052 section 4 of 5, complete sequence
Position Repeat Coverage Repeat
41057 AT * 10 18/20 AT AT AT AT AC AT AT GT AT AT
266006 TA * 16 29/32 TA TA TA TA TA TA TA TA TA TA TA TA TA TA CA GT
271029 TA * 10 18/20 TA TA TA TA TG CA TA TA TA TA
301892 AG * 12 22/24 AG GA AG AG AG AG AG AG AG AG AG AG
-----------------------------------------------------------------------------------------
Total sequence length......................... 307228
Total number of repeats detected.............. 4
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 1 1 0 0 0 0 0 0 0 0 0
15 to 19 0 1 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 2 1 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 2 TA = 3
1 AG + 0 GA + 0 CT + 0 TC = 1
0 GT + 0 TG + 0 CA + 0 AC = 0
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7302231|gb|AE003786.1|AE003786 Drosophila melanogaster genomic scaffold 142000013386052 section 3 of 5, complete sequence
Position Repeat Coverage Repeat
61015 AC * 10 18/20 AC TT AC AC AC AC AC AC AC AC
74516 AC * 10 18/20 AC TT AC AC AC AC AC AC AC AC
81179 AC * 10 18/20 AC AC AC AC AC AC AC AT AC AT
134178 AC * 10 18/20 AC AC AC AC AC AC AC AT AC AT
140069 AC * 10 18/20 AC AC AC AC AC AC AC AT AC AT
140686 TA * 11 20/22 TA AT TA TA TA TA TA TA TA TA TA
148010 AG * 10 18/20 AG AG AG AG AG AG AG AG AG CT
158153 GA * 11 20/22 GA CA GA AA GA GA GA GA GA GA GA
158467 AG * 11 20/22 AG AG AG AG AG AG AG CA AG AG AG
158741 GA * 15 27/30 GA CA GA GA GA GA GA GA GA GC GA GA GA GA TA
159017 GA * 10 18/20 GA CA GA GA GA GA GA GA GA GC
160558 TA * 10 18/20 TA CA TA TA TA TA TA TA TA AA
190911 AT * 10 18/20 AT AT AT AT AT AT AT AT TT TT
261779 AT * 10 18/20 AT AT AC AT AT AT AC AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 316735
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 2 2 2 5 0 0 0 0 0 0 0
15 to 19 0 0 0 1 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 2 2 3 5 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 2 TA = 4
2 AG + 3 GA + 0 CT + 0 TC = 5
0 GT + 0 TG + 0 CA + 5 AC = 5
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7302205|gb|AE003785.1|AE003785 Drosophila melanogaster genomic scaffold 142000013386052 section 2 of 5, complete sequence
Position Repeat Coverage Repeat
888 TA * 10 18/20 TA TA TA TA TT TT TA TA TA TA
32471 GT * 11 20/22 GT GT GT GT GT GT GT GT TT GT GG
51287 CA * 11 21/22 CA CA CA CT CA CA CA CA CA CA CA
65348 AC * 11 20/22 AC AC AC AC AC AA AC AC AC AC GC
93878 TA * 10 18/20 TA TA TC TA TA TA TA TA TA AA
106689 TG * 10 19/20 TG TG TG TG TG TG TG TG CG TG
129368 AC * 13 24/26 AC AC AC GC AC AC AC AC AC AC AC TC AC
171696 AG * 18 33/36 AG AG AG AG AG AG AG AG AG AG AG AG AG CG TG GG AG AG
213113 TG * 10 18/20 TG TA TG TG TG TG TG TG TA TG
222095 TA * 16 29/32 TA TA TA TA TA TA TA TA TA TA TA TA TA TT AA TT
228041 TA * 12 22/24 TA TA TA AA TA TT TA TA TA TA TA TA
244761 AT * 10 18/20 AT AT AT AG AT AT AT TT AT AT
261236 GT * 16 29/32 GT GT GT GT GT GT GT GT GT GT GT GT GC CT TT GT
281492 AT * 11 20/22 AT AT AT AT AT AT AT AA AT AT AA
-----------------------------------------------------------------------------------------
Total sequence length......................... 296279
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 3 0 0 2 1 2 1 0 0 0 0
15 to 19 0 1 1 0 0 0 0 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 4 1 0 2 1 2 2 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 4 TA = 6
1 AG + 0 GA + 0 CT + 0 TC = 1
2 GT + 2 TG + 1 CA + 2 AC = 7
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7302167|gb|AE003784.1|AE003784 Drosophila melanogaster genomic scaffold 142000013386052 section 1 of 5, complete sequence
Position Repeat Coverage Repeat
20504 TC * 11 20/22 TC TT TC TC TC TC TC TC TC TC GC
52842 TA * 10 18/20 TA TA TG AA TA TA TA TA TA TA
60271 AT * 10 18/20 AT AT AT AC AT AT GT AT AT AT
61911 AT * 29 53/58 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TC AT AT AC AT AT GT GT AT
79508 TA * 10 18/20 TA TA TC TA TA TC TA TA TA TA
100320 CT * 10 18/20 CT CT CT TT CT CC CT CT CT CT
141098 GT * 10 18/20 GT AT GT CT GT GT GT GT GT GT
142824 TA * 11 20/22 TA TA TA TA TG TA TA TA TA TA TT
168693 TA * 18 33/36 TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA AA CA TA
220966 GT * 10 18/20 GT GT GA GT GT GT GT GT GT GC
221367 TA * 10 18/20 TA TA TA TT TA TA TA TA TG TA
233088 TA * 12 22/24 TA TA TA TA CA TA TA TA TA TA TG TA
261698 AT * 10 19/20 AT GT AT AT AT AT AT AT AT AT
279597 TA * 10 18/20 TA TA TA TT TA TA TA TA CA TA
300317 TA * 10 18/20 TA TA TA TG TA TA TA TA TA TT
304288 TA * 11 20/22 TA TA TT AA TA TA TA TA TA TA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 313072
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 8 0 0 0 0 0 2 1 1 0 0
15 to 19 0 1 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 1 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 9 0 0 0 0 0 2 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 9 TA = 12
0 AG + 0 GA + 1 CT + 1 TC = 2
2 GT + 0 TG + 0 CA + 0 AC = 2
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289017|gb|AE003098.1|AE003098 Drosophila melanogaster genomic scaffold 142000013385318, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 24781
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7316098|gb|AE002778.1|AE002778 Drosophila melanogaster genomic scaffold 142000013386042, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7302304|gb|AE003790.1|AE003790 Drosophila melanogaster genomic scaffold 142000013386042 section 2 of 2, complete sequence
Position Repeat Coverage Repeat
7120 GT * 10 18/20 GT GT GT GT GT GC TT GT GT GT
11114 AT * 20 36/40 AT AT AT AT AT AT AC AT AT TT AT AT AT AT AT AT AT AT AT TG
21281 CA * 15 27/30 CA CA CA CA CG CA CA CG CA CA CA CA CA CA GA
32653 GT * 10 18/20 GT GT GT TT GT GT GT GT GT GC
37725 GA * 18 33/36 GA GA TA GA GA GA GA GA CA GA GA GA GA GA GA GA GA GC
48604 TG * 12 22/24 TG TG TG TG CG TG TG TG TG TG TG TA
49209 TG * 10 19/20 TG TG TG TG TG TG TG TG TT TG
77632 AT * 16 29/32 AT AT AT CT AT CT AT AT AT AT AT AT AT AT AT CT
103007 CA * 10 19/20 CA CA CA CA CA CA CA CA CA CG
121996 GT * 11 20/22 GT GT GT GT GT GT GT GG GT GT GG
-----------------------------------------------------------------------------------------
Total sequence length......................... 210451
Total number of repeats detected.............. 10
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 0 0 0 0 1 2 3 0 0 0 0
15 to 19 1 0 0 1 0 1 0 0 0 0 0 0
20 to 24 1 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 0 0 1 0 2 2 3 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 0 TA = 2
0 AG + 1 GA + 0 CT + 0 TC = 1
3 GT + 2 TG + 2 CA + 0 AC = 7
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7302263|gb|AE003789.1|AE003789 Drosophila melanogaster genomic scaffold 142000013386042 section 1 of 2, complete sequence
Position Repeat Coverage Repeat
11252 CA * 10 18/20 CA CA CA CT CA CA CA CA CA GA
45199 AT * 12 22/24 AT AT AT AT AT AT AT AT AT AC AT AA
54054 TG * 10 18/20 TG TG TG TG TG TG TG TG AG AG
76185 GT * 16 29/32 GT GT GT GT GT GT GT GT GT GT GT GT GT GA AT AT
76962 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GT GA AT GT
115076 CT * 10 18/20 CT CT CT CA CT CA CT CT CT CT
115389 AT * 16 29/32 AT AT AT AC AT AT AT AT AT AT AT AT AC AT AC AT
118576 AT * 12 22/24 AT GT AT AC AT AT AT AT AT AT AT AT
120300 TG * 10 18/20 TG CG TG TA TG TG TG TG TG TG
135199 AT * 10 18/20 AT AT AT AT TT AT AT AT AT AA
135573 TG * 11 20/22 TG TA TG TG TG TG TG TG TG TG TT
135600 TG * 10 18/20 TG TG TG TG TG TG TG TG AA TG
137428 CT * 10 18/20 CT CG CT CT CT CT CT CT CT CG
145332 AG * 10 18/20 AG CA AG AG AG AG AG AG AG AG
222201 AT * 13 24/26 AT AT GT AT AT AT AT AT AT AT AT AT AC
258114 GT * 11 20/22 GT GT GT GT GT GT GT GC GT GC GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 298904
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 0 1 0 0 1 4 2 0 2 0 0
15 to 19 1 0 0 0 0 0 0 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 0 1 0 0 1 4 3 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 0 TA = 5
1 AG + 0 GA + 2 CT + 0 TC = 3
3 GT + 4 TG + 1 CA + 0 AC = 8
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7316102|gb|AE002787.1|AE002787 Drosophila melanogaster genomic scaffold 142000013386047, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7304243|gb|AE003842.1|AE003842 Drosophila melanogaster genomic scaffold 142000013386047 section 52 of 52, complete sequence
Position Repeat Coverage Repeat
381 GA * 10 18/20 GA GC GA GA GA GA GA GG GA GA
28292 AT * 10 18/20 AT AT AT AT AT GT AT AT AT GT
65580 CA * 13 24/26 CA CA CA GA CA CA CA CA CA CA CA CA CG
81933 CA * 11 20/22 CA CA CT CA CA CA CA CA CG CA CA
82778 CA * 11 20/22 CA CA CA CA CA CA CA CA CT CA CG
82957 TC * 11 20/22 TC TC TC GC TC TC TC GC TC TC TC
86357 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC AC AA AT
92991 GT * 10 18/20 GT TG GT GT GT GT GT GT GT GT
112327 CA * 13 25/26 CA CA CA CA CA CA CA CA CA CA CA CA CT
115793 AC * 14 26/28 AC AC AC AC AC AC AC AC AC AC AC AC AT TC
138956 TG * 10 18/20 TG TG TT TG TG TG TG TA TG TG
152888 TG * 12 22/24 TG TG TG AG TG TG TG TG TG TG AG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 252413
Total number of repeats detected.............. 12
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 0 0 1 2 4 2 1 1 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 0 0 1 2 4 2 1 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 0 TA = 1
0 AG + 1 GA + 0 CT + 1 TC = 2
1 GT + 2 TG + 4 CA + 2 AC = 9
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7304203|gb|AE003841.1|AE003841 Drosophila melanogaster genomic scaffold 142000013386047 section 51 of 52, complete sequence
Position Repeat Coverage Repeat
16066 CA * 15 27/30 CA CA CA CA CA CA CA CA CA CA CA CA CA CT TC
27950 AG * 18 33/36 AG AG AG AG AG AT AG AG AG AG AG AG AG AG AG CG AG CG
28597 GT * 13 24/26 GT GT GT GT AT GT GT GT GT CT GT GT GT
34943 AC * 11 20/22 AC AC AT GC AC AC AC AC AC AC AC
37716 AT * 12 22/24 AT AT AT AT AT AT AT AT AT AT AC AA
98057 CA * 16 30/32 CA CA CA CA CA CA CA CA CA CA CA CA CA CA TA GA
108669 TA * 11 20/22 TA TA TA TA TA TA TA TA TA TG AA
109575 GT * 15 28/30 GT GC GT GT GT GT GT GT AT GT GT GT GT GT GT
134756 GA * 10 18/20 GA GA GG GA GA GA GA GA GA GC
135826 GT * 11 20/22 GT CA GT GT GT GT GT GT GT GT GT
136003 TG * 10 18/20 TG TG TG TG TG TG TG TG AG TC
189812 CT * 17 31/34 CT CT CT CT CT CT CT CT CT CT GT CT CT CT CA CA CT
191410 TA * 12 22/24 TA TA TA TA TA TA TA TA TA TA TT TC
222121 AT * 11 20/22 AT AT AT AA AT AT AT CT AT AT AT
225939 CT * 11 20/22 CT CT CT CT CA CT CT CT CT CT AT
247465 TA * 12 22/24 TA TA TA TA TA TA TA TA TA TA TA GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 262082
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 3 0 1 1 0 1 2 0 1 0 0
15 to 19 0 0 1 0 0 2 0 1 0 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 3 1 1 1 2 1 3 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 3 TA = 5
1 AG + 1 GA + 2 CT + 0 TC = 4
3 GT + 1 TG + 2 CA + 1 AC = 7
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7304160|gb|AE003840.1|AE003840 Drosophila melanogaster genomic scaffold 142000013386047 section 50 of 52, complete sequence
Position Repeat Coverage Repeat
4803 CA * 12 23/24 CA GA CA CA CA CA CA CA CA CA CA CA
19519 AC * 15 27/30 AC AC AC AC AC AC AC AC AC AC AC AC AA AG GC
19724 CA * 12 22/24 CA CA GA TA CA CA CA CA CA CA CA CA
20614 TG * 13 24/26 TG AG TT TG TG TG TG TG TG TG TG TG TG
22358 TG * 12 22/24 TG TG TG TG TG TG TG TG TG CG TG AG
23188 AT * 12 22/24 AT AC AT AT AT AT AT AT AT AT AT AC
25762 CT * 22 40/44 CT CT CT CT CT CT CC CT CT CT CT CT CT CT CG CT CG CT CT TT CT CT
27573 AT * 11 20/22 AT AT AT AT AT AT AC AT AT GT AT
31757 AT * 10 18/20 AT AT AT AA AT AT AT AT AG AT
35869 AC * 12 22/24 AC AC GC AC AC AC TC AC AC AC AC AC
36066 TG * 16 29/32 TG CG TG TG TG TG TG TG TG TG TG TG TG TG TG CC
38516 CA * 13 24/26 CA CA CA CA CA CA CA CA CG CA CG CA CA
39620 CT * 10 18/20 CT CT CT CT CT TG CT CT CT CT
42922 AT * 13 24/26 AT TT AT AT AT AT AT AT AT AT AT AT GT
44288 CA * 10 18/20 CA CA CA CA CA CA CA TA CA CC
44308 AC * 20 36/40 AC AC AC AA AC AC AA AC AC AC AC AC AC AC AC AC AC AA AC AA
46065 CA * 11 20/22 CA CA CC AA CA CA CA CA CA CA CA
46477 TG * 13 24/26 TG TG TG TG TG TT TG TG TG TG AG TG TG
50919 AT * 17 31/34 AT AT AT AT AT AA AT AT AT AT AT AC AT AT AT AT AG
60813 TA * 13 24/26 TA TA CA TA TA TA TA TG TA TA TA TA TA
72567 AC * 10 18/20 AC AC AC AC AC AC CG AC AC AC
82035 CT * 11 20/22 CT AG CT CT CT CT CT CT CT CT CT
88483 CT * 21 38/42 CT CT CT CT CT CT CT CT CT CT CT TT CT CT AT CT AT CT CT CT TT
88717 GA * 13 24/26 GA GA TA GA GA GA GA GA GA GA GA GA GC
148905 CT * 11 20/22 CT GC CT CT CT CT CT CT CT CT CT
152975 AT * 10 18/20 AT AT AT AA AT AT AT AT AT CT
155041 GT * 11 20/22 GT GT GC GT GT GT GT AT GT GT GT
169921 AT * 10 18/20 AT AC AT AT AT GT AT AT AT AT
192068 TA * 11 20/22 TA TA TA TA TG TA CA TA TA TA TA
213590 AT * 26 47/52 AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TG GT AG
221842 GT * 11 20/22 GT GT GT GT CT GT GT GT CT GT GT
225055 TG * 10 18/20 TG TG TG CG TG TG TG TG TG TT
230561 TG * 10 18/20 TG TC TC TG TG TG TG TG TG TG
234842 TG * 10 18/20 TG TG TG TG TG TG TG TG GG AG
235746 TA * 13 24/26 TA AA TA TA TA TA TA TA TA TA TA TA TC
-----------------------------------------------------------------------------------------
Total sequence length......................... 259764
Total number of repeats detected.............. 35
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 6 3 0 1 2 5 6 2 0 3 0 0
15 to 19 1 0 0 0 1 0 1 0 0 0 0 0
20 to 24 0 0 0 0 1 0 0 0 0 2 0 0
25 to 29 1 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 8 3 0 1 4 5 7 2 0 5 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
8 AT + 3 TA = 11
0 AG + 1 GA + 5 CT + 0 TC = 6
2 GT + 7 TG + 5 CA + 4 AC = 18
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7304109|gb|AE003839.1|AE003839 Drosophila melanogaster genomic scaffold 142000013386047 section 49 of 52, complete sequence
Position Repeat Coverage Repeat
21854 CA * 13 25/26 CA CC CA CA CA CA CA CA CA CA CA CA CA
25337 TG * 10 18/20 TG TT TG TG TG TG TG TG TG CG
55150 GT * 10 18/20 GT AT GT GT GT GT GT GT GT AT
77799 AT * 11 20/22 AT TG AT AT AT AT AT AT AT AT AT
78828 TG * 11 20/22 TG TG TG TG TA TG TG CG TG TG TG
126733 AC * 11 20/22 AC AC AC AC AC AC AC AC AT GC AC
150403 GT * 16 29/32 GT GT GT GT GT GT GT GT GT GT GA GT GT GT CT AT
153968 AC * 10 18/20 AC AC AC AC AC AC AC AC AC GT
156120 TG * 17 31/34 TG TG AG TG TG TG TG CG TG TG TG TG TG TG TG TG GG
157104 TG * 15 27/30 TG CT TG TG TG TG TG TG TG TG TG TG TG TG CG
163752 GT * 13 24/26 GT GC GT GT GT GT GT GT GT GT GT GG GT
164783 CA * 16 29/32 CA CA CG CA CA CA CA CA CA CA CA CA CA CA TA CT
184095 AC * 12 23/24 AC AC AC GC AC AC AC AC AC AC AC AC
186646 TG * 11 21/22 TG TG TG TG TG TG TG TG TA TG TG
190991 AC * 12 22/24 AC AC TC GC AC AC AC AC AC AC AC AC
191677 CA * 13 25/26 CA CA CA CA CA CA CA CA CA CA CA CT CA
191792 CA * 12 22/24 CA CA CA CA CA CA CA CA CA TA CA TA
191961 CA * 18 33/36 CA CA CA CA CA CA CA CA CA CA CA CG CA CA CA CA TA AA
195037 CT * 11 20/22 CT CT CT CT CT CT CT CT CT CT TC
196851 TG * 10 18/20 TG TG TC TG TG TG TG TG TG GG
203490 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GC GT GT GG
236310 CA * 10 18/20 CA CT AA CA CA CA CA CA CA CA
240053 AT * 10 18/20 AT AT AT TA AT AT AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 261850
Total number of repeats detected.............. 23
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 0 0 0 4 4 4 3 0 1 0 0
15 to 19 0 0 0 0 0 2 2 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 0 0 0 4 6 6 4 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 0 TA = 2
0 AG + 0 GA + 1 CT + 0 TC = 1
4 GT + 6 TG + 6 CA + 4 AC = 20
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7304068|gb|AE003838.1|AE003838 Drosophila melanogaster genomic scaffold 142000013386047 section 48 of 52, complete sequence
Position Repeat Coverage Repeat
4204 TG * 12 22/24 TG TA TG TG TG TG TG TG TG TG TG AG
5364 CA * 14 26/28 CA CA CA CA CA CA CA CA CA CA CA CC CG CA
6606 GA * 22 40/44 GA AA GA GA GA GA GA TA GA GA GA GA GA GA GA GA GA GC GA GC GA GA
9009 AC * 15 27/30 AC TC AC AC AC AC AC AC AC AC AC AC AC AG CC
10175 CA * 13 24/26 CA CA AA TA CA CA CA CA CA CA CA CA CA
22360 AT * 10 18/20 AT AC AT AT AT AC AT AT AT AT
24749 AC * 10 18/20 AC AG AC AC AC AC AC AC AT AC
28000 AT * 11 20/22 AT AC AT AT AT AT AT AT AT TT AT
28759 CA * 10 18/20 CA CA CA CA CA CA CA CA CA TG
66672 CA * 13 24/26 CA CA CA CA AA CA CA CA CA CA TA CA CA
67102 AC * 10 18/20 AC AG AC AC AC AC AC GC AC AC
113501 AT * 11 20/22 AT AT AT AT GT AT GT AT AT AT AT
120152 TG * 18 33/36 TG AA TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TA
127906 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CA GG
128589 CA * 10 18/20 CA GC CA CA CA CA CA CA CA CA
130713 GT * 13 25/26 GT GT GT GT GT GT GC GT GT GT GT GT GT
159917 AC * 11 20/22 AC AT AC AC AC AC GC AC AC AC AC
185989 GT * 12 22/24 GT GT GT GT GT GT GT GA GT GA GT GT
241641 AT * 10 18/20 AT GT TT AT AT AT AT AT AT AT
246274 TG * 12 22/24 TG TG TG TT TG TG TG TG TG TG AG TG
254133 AT * 11 20/22 AT AT AG AT AT AT AT CT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 263411
Total number of repeats detected.............. 21
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 0 0 0 3 6 2 2 0 0 0 0
15 to 19 0 0 0 0 1 0 1 0 0 0 0 0
20 to 24 0 0 0 1 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 0 0 1 4 6 3 2 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 0 TA = 5
0 AG + 1 GA + 0 CT + 0 TC = 1
2 GT + 3 TG + 6 CA + 4 AC = 15
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7304040|gb|AE003837.1|AE003837 Drosophila melanogaster genomic scaffold 142000013386047 section 47 of 52, complete sequence
Position Repeat Coverage Repeat
50940 AC * 10 18/20 AC AC AC AC AC AC AC AC AC GT
60799 CA * 10 18/20 CA CA CA CA CT TA CA CA CA CA
99640 TA * 10 18/20 TA TA TG TA CA TA TA TA TA TA
125985 TA * 11 20/22 TA AA TA TA TA TA TA CA TA TA TA
148626 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CA GC
162795 AG * 13 24/26 AG TG AG AG AG AG AG AG AG AG AG AG CG
164046 CA * 13 24/26 CA CA CG CA CA CA TA CA CA CA CA CA CA
167230 CA * 15 28/30 CA CC CA CC CA CA CA CA CA CA CA CA CA CA CA
167594 CA * 11 20/22 CA AA AA CA CA CA CA CA CA CA CA
167740 AC * 10 18/20 AC CC AC AC AC AC AC AC AC AG
168586 AC * 10 18/20 AC AA AC AC AC AA AC AC AC AC
170062 TG * 11 21/22 TG TG TG TG TG TG TG TT TG TG TG
190399 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA CA GG
197539 TG * 12 23/24 TG TG TG TG TG TG TG TG TG TG TC TG
206259 AG * 11 20/22 AG CG AG AT AG AG AG AG AG AG AG
216043 CT * 10 18/20 CT CT CT CT CT GT CG CT CT CT
218437 CT * 11 20/22 CT GA CT CT CT CT CT CT CT CT CT
220615 AG * 12 22/24 AG AG AA AG AG AG AG AG AG AG TG AG
225816 GT * 10 18/20 GT GT GT GT GC GA GT GT GT GT
227536 CA * 12 22/24 CA CA CA GG CA CA CA CA CA CA CA CA
228068 GT * 10 18/20 GT GT GT GC TT GT GT GT GT GT
232439 GT * 17 31/34 GT AT GT GT GT GT GT GT GT GT GT GT GT GC TT GT GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 234905
Total number of repeats detected.............. 22
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 2 3 0 3 6 2 2 0 2 0 0
15 to 19 0 0 0 0 0 1 0 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 2 3 0 3 7 2 3 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 2 TA = 2
3 AG + 0 GA + 2 CT + 0 TC = 5
3 GT + 2 TG + 7 CA + 3 AC = 15
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7304001|gb|AE003836.1|AE003836 Drosophila melanogaster genomic scaffold 142000013386047 section 46 of 52, complete sequence
Position Repeat Coverage Repeat
19460 CA * 21 38/42 CA CA TA CA CA CA CA CA CA CA CC CA CA CA CA CA CA AA CA CA TA
26342 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GA GT CT
28764 GT * 17 31/34 GT GT CT GG GT GT GT GT GT GT GT GT GT GT GT GT AT
32834 TG * 10 18/20 TG TG TC TG TA TG TG TG TG TG
66924 AT * 10 18/20 AT AT AT GT AT AC AT AT AT AT
71897 AG * 10 18/20 AG AG AG AG AG CG AC AG AG AG
72883 AC * 12 22/24 AC AC AC AT AC AC AC AC AA AC AC AC
109504 CA * 12 22/24 CA CA CA AA CA CA CA CA CA AA CA CA
118319 TG * 17 31/34 TG TA TG TG TG TG TG TG TG TG TG TG TG TG TT CG TG
125795 GT * 11 20/22 GT GT GT GC GT GT GT GG GT GT GT
127551 AG * 21 39/42 AG AG CG GG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG TG
139000 AT * 12 22/24 AT AT AT AT AT AT AT AT GT AT AT AG
140625 TG * 10 18/20 TG TT CG TG TG TG TG TG TG TG
140649 TG * 14 26/28 TG CG TG TG TG TG TG TG TG TG TG TG TA TG
143695 CA * 17 31/34 CA CA CA CA CA CA CA CA CA CA CA CA CT CA CA CT AA
146879 TC * 10 18/20 TC TC TC TC TC AC TC TC TC TT
147635 GT * 10 18/20 GT GT GT GT GT GT GT AT TT GT
172055 CT * 10 18/20 CT CT CT CT CT CT CT GT AT CT
241786 CA * 11 20/22 CA GG CA CA CA CA CA CA CA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 253189
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 0 1 0 1 2 3 3 1 1 0 0
15 to 19 0 0 0 0 0 1 1 1 0 0 0 0
20 to 24 0 0 1 0 0 1 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 0 2 0 1 4 4 4 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 0 TA = 2
2 AG + 0 GA + 1 CT + 1 TC = 4
4 GT + 4 TG + 4 CA + 1 AC = 13
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7303956|gb|AE003835.1|AE003835 Drosophila melanogaster genomic scaffold 142000013386047 section 45 of 52, complete sequence
Position Repeat Coverage Repeat
20518 AT * 10 18/20 AT AT AT AT GT AT AT AT AT GT
28682 TG * 10 18/20 TG TG TG TG TG TG TG TG TT GG
50320 TG * 11 20/22 TG TG TG CG TG TG TG TG TT TG TG
50918 TG * 10 18/20 TG TG TG TG TG TG TG CG AG TG
77754 TA * 20 37/40 TA TA TA TA TA CA TA TA TA AA TA TA TA TA TA TA TA GA TA TA
78060 GT * 11 20/22 GT GT CT GT GT GT GT GA GT GT GT
94661 AT * 10 18/20 AT AT AT AT AT GT AT AT AA AT
113665 AT * 11 20/22 AT TT AT AT AT GT AT AT AT AT AT
127822 TG * 10 18/20 TG CG TG TG TG TG TG CG TG TG
218059 CT * 10 18/20 CT TG CT CT CT CT CT CT CT CT
234090 CA * 12 22/24 CA CA CA CA CA CA CA CT CA CA CA CC
240590 AT * 21 39/42 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT GC
241043 CA * 10 18/20 CA CC CA CA CA CA CG CA CA CA
241670 GT * 10 18/20 GT GT GC GT GT GT GG GT GT GT
242328 TG * 18 33/36 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TC TG CC
249951 TG * 11 20/22 TG AG TG TG TG CG TG TG TG TG TG
253725 CA * 15 27/30 CA TA CA CA CA CG CA CA CA CA CA CA CA CA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 259860
Total number of repeats detected.............. 17
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 0 0 0 0 2 5 2 0 1 0 0
15 to 19 0 0 0 0 0 1 1 0 0 0 0 0
20 to 24 1 1 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 1 0 0 0 3 6 2 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 1 TA = 5
0 AG + 0 GA + 1 CT + 0 TC = 1
2 GT + 6 TG + 3 CA + 0 AC = 11
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7303908|gb|AE003834.1|AE003834 Drosophila melanogaster genomic scaffold 142000013386047 section 44 of 52, complete sequence
Position Repeat Coverage Repeat
13527 GT * 10 19/20 GT GT GT GT TT GT GT GT GT GT
28320 TG * 10 18/20 TG AG TG TG TG TG TG TG TG AG
50124 TA * 12 22/24 TA TA TA TA TA TA TA AA AA TA TA TA
62393 AC * 10 18/20 AC AC AC AC AC AC AC AG AC TC
65991 CA * 10 18/20 CA CA CA CA CA TA CA CA TA CA
81698 CT * 15 28/30 CT AT CT CT CT CT CT CT CT CT CA CT CT CT CT
82358 TC * 10 18/20 TC TC TC TC TC TC TC TT CC TC
90936 AT * 10 18/20 AT AT AT AT CT AT AT CT AT AT
155217 AT * 11 20/22 AT AT TT AT AT AT AT AT AC AT AT
193252 AG * 11 20/22 AG AG AA AG AG AG AG AG AG AA AG
256612 TA * 16 29/32 TA TA TA TA TA TA TA TA TA TG TA TA TA TA TG CA
257064 GA * 13 25/26 GA AA GA GA GA GA GA GA GA GA GA GA GA
-----------------------------------------------------------------------------------------
Total sequence length......................... 257324
Total number of repeats detected.............. 12
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 1 1 1 1 1 1 1 1 0 0 0
15 to 19 0 1 0 0 0 0 0 0 0 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 2 1 1 1 1 1 1 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 2 TA = 4
1 AG + 1 GA + 1 CT + 1 TC = 4
1 GT + 1 TG + 1 CA + 1 AC = 4
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7303875|gb|AE003833.1|AE003833 Drosophila melanogaster genomic scaffold 142000013386047 section 43 of 52, complete sequence
Position Repeat Coverage Repeat
8301 GT * 10 18/20 GT GT GT GC GT GC GT GT GT GT
20200 AG * 18 33/36 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG CT CG
21011 TG * 13 24/26 TG TG TC TG TG TG TG TG TG TG TT TG TG
38808 AG * 13 24/26 AG AG CG AG AG AG AG AG AG AG AG AG AC
44424 TG * 13 24/26 TG TG TG TG TG TG TT TG TG TG TA TG TG
45886 AT * 11 20/22 AT TT AT AT AT AT AT AT AT AT GT
46278 AT * 10 19/20 AT AT AT AT AT AT AA AT AT AT
46695 TA * 32 58/64 TA TT TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA GG TC TA TG TA CA
64917 GT * 10 18/20 GT GT TT GT TT GT GT GT GT GT
66129 AT * 10 19/20 AT AT TT AT AT AT AT AT AT AT
66186 GA * 12 22/24 GA CA GA GA GA CA GA GA GA GA GA GA
67107 TG * 11 20/22 TG TG TG AG TG TG TG TG TA TG TG
67303 AG * 16 29/32 AG AG AG AA TG AG AG AG AG AG AG AG AG AG CG AG
67413 CA * 10 18/20 CA CA CA GA CA CA CA AA CA CA
67556 AG * 10 18/20 AG AG AA AG AG GG AG AG AG AG
67861 GA * 16 29/32 GA GA GA AA TA GA GA GA GA GA GA GA GA GA GA GG
79176 CT * 18 33/36 CT TT CT CT CT CT CT CT CT CT CT CT CT CT CT TT TT CT
82251 AC * 16 29/32 AC AC AC AC AC AC AC AC AC AC AC AC AG GC AC AG
82573 TG * 13 24/26 TG CG TA TG TG TG TG TG TG TG TG TG TG
83176 GT * 10 18/20 GT GT GT GT AT GT GT GT GT GC
91257 CA * 11 20/22 CA CA CA CA CA GA GA CA CA CA CA
96333 AT * 15 27/30 AT AT AT AT GT AT AT AT AT AT AT AT AT AA CT
117425 CA * 16 30/32 CA CA TA CA CA CA CA CA CA CA CA CA CA CA TA CA
117901 CA * 11 20/22 CA CA CA CA CA CA CA CA CG CA CC
118924 CA * 10 18/20 CA CA CA CT CA CA CA CG CA CA
134008 TG * 10 18/20 TG TG TA TG TA TG TG TG TG TG
145007 TA * 13 24/26 TA TA TA AA TA TG TA TA TA TA TA TA TA
193006 GT * 10 18/20 GT GT GT GT GT GT GT GC GT GG
195524 AC * 13 25/26 AC TC AC AC AC AC AC AC AC AC AC AC AC
195720 GT * 11 20/22 GT GG GT GC GT GT GT GT GT GT GT
196048 TG * 10 18/20 TG TT AG TG TG TG TG TG TG TG
197454 TG * 11 20/22 TG TG TG TG TT TG TG TG TG TA TG
201922 CT * 20 36/40 CT CT CG CT CT CT CT CT CT CT CT CT CT CT CT CT CT GT CG CG
212203 TG * 10 18/20 TG CG TG CG TG TG TG TG TG TG
218591 AT * 10 18/20 AT AT AT AT AT AA AT AC AT AT
237265 AC * 15 28/30 AC AC AC AC AC AC AC AC AC AC AC AC AG AA AC
240614 GT * 10 19/20 GT GT GT TT GT GT GT GT GT GT
253341 TG * 15 27/30 TG TG TG TG TG TG TG CG TG TG TG TG TG AG TT
262513 GT * 12 22/24 GT GT GT GT TT GT GT GT GT GG GT GT
264788 GT * 10 18/20 GT GT GC CT GT GT GT GT GT GT
264810 GT * 10 18/20 GT GT GT GT GT GT CT GT GT GC
-----------------------------------------------------------------------------------------
Total sequence length......................... 265562
Total number of repeats detected.............. 41
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 1 2 1 1 4 8 9 0 0 0 0
15 to 19 1 0 2 1 2 1 1 0 0 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 1 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 1 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 2 4 2 3 5 9 9 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 2 TA = 7
4 AG + 2 GA + 2 CT + 0 TC = 8
9 GT + 9 TG + 5 CA + 3 AC = 26
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7303842|gb|AE003832.1|AE003832 Drosophila melanogaster genomic scaffold 142000013386047 section 42 of 52, complete sequence
Position Repeat Coverage Repeat
92499 TG * 16 29/32 TG TG TG TG TT GG TG TG TG TG TG TG TG TG TC TG
94387 AT * 12 22/24 AT AT AT AT AT AT AT AT AT TT CT AT
107785 TG * 13 24/26 TG TG TG GG TG TG TG TG TG TG AG TG TG
108901 AT * 15 27/30 AT AT GT AT AT AT AT AT AT AG AT AT AT AT CT
111751 TG * 14 26/28 TG TG TG TG TG TG TG TG TG TG TG TG TG GA
121452 TA * 14 26/28 TA TA TA TA TA TA TA TA TA CA TA TA TA TT
186237 CA * 12 22/24 CA CA CA GA CA CA CA CA CA CA CA GA
221865 AC * 12 22/24 AC AC CC AC AC TC AC AC AC AC AC AC
222304 CA * 12 22/24 CA CA CA CA CA CA CA AA CA CA CC CA
222885 TA * 13 24/26 TA TA TA TA TA TA TA TA TA TA TA TA GC
228581 CA * 13 25/26 CA CG CA CA CA CA CA CA CA CA CA CA CA
229860 AT * 10 19/20 AT AA AT AT AT AT AT AT AT AT
237397 TA * 12 22/24 TA TT TA TA TA TA TA TA TA TA TA TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 261713
Total number of repeats detected.............. 13
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 3 0 0 1 3 2 0 0 0 0 0
15 to 19 1 0 0 0 0 0 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 3 0 0 1 3 3 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 3 TA = 6
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 3 TG + 3 CA + 1 AC = 7
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7303794|gb|AE003831.1|AE003831 Drosophila melanogaster genomic scaffold 142000013386047 section 41 of 52, complete sequence
Position Repeat Coverage Repeat
3632 TA * 15 28/30 TA TA CA TA TA TA TA TA TA TA TA TA TA TT TA
7299 AT * 12 22/24 AT AT AT AT AT AT AT AT AT CT AT CT
13507 TC * 10 19/20 TC TC TC TC TC TC TC TC TC TG
18786 TG * 10 18/20 TG TG TT TG TG TG TG TG TG TT
20552 TA * 12 22/24 TA TA TA TA TA TA TA TA CA TC TA TA
88353 AT * 12 22/24 AT AT AT AT AT AT AT AT GT AT GT AT
91783 TA * 12 22/24 TA TA TA TA TA TA TA TG TA TA TA TT
105315 GT * 16 29/32 GT GT GT GT GT GT GT GT GT GT GT GT GT GT TT TG
106124 CA * 23 42/46 CA CA CA CC CA CC CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA GG
106544 AT * 10 18/20 AT AT AT AT AC AT AT AT AT CT
113022 AC * 11 20/22 AC AC AC GC GC AC AC AC AC AC AC
114231 AC * 10 18/20 AC AC AC AC GC AC AC AC AC AA
127369 CT * 15 27/30 CT CT CT CT CT CT CT CT CT GT CT CT TT CT CG
153126 AG * 12 22/24 AG AG AG AG AG AG AG AG AG AG AG GA
163875 TG * 18 33/36 TG TG TG TG TG TG TG TG TG TG TG TG CG TA TC TG TG TG
170926 CA * 10 18/20 CA CA CA CA CA CA CA CA CC AA
174618 TG * 13 24/26 TG TG TT TG TG TG TG TC TG TG TG TG TG
174806 TG * 16 29/32 TG TG TG TG AG TG TG TG TG TG TG TG TG CG TG CG
178735 GT * 11 20/22 GT GA GT GT GC GT GT GT GT GT GT
189684 AT * 11 20/22 AT AT AT AT AT AT AT AT AT GT TT
191412 CA * 17 31/34 CA GA CA CA CA CA CA CA CA CA CA CA TA CA TA CA CA
194042 TA * 10 18/20 TA TA TA TA TA TA AA TG TA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 260916
Total number of repeats detected.............. 22
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 3 1 0 2 1 2 1 1 0 0 0
15 to 19 0 1 0 0 0 1 2 1 0 1 0 0
20 to 24 0 0 0 0 0 1 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 4 1 0 2 3 4 2 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 4 TA = 8
1 AG + 0 GA + 1 CT + 1 TC = 3
2 GT + 4 TG + 3 CA + 2 AC = 11
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7303755|gb|AE003830.1|AE003830 Drosophila melanogaster genomic scaffold 142000013386047 section 40 of 52, complete sequence
Position Repeat Coverage Repeat
4739 TG * 10 18/20 TG TG TG TG TG TG TG TG TT GG
21847 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TA TC
30859 CA * 10 18/20 CA CA GA CA CA CA AA CA CA CA
35934 TG * 17 31/34 TG TG TG AG TG TG TG TG TG TG TG TG TG TG TT TG AG
42628 CT * 10 18/20 CT CT CG TT CT CT CT CT CT CT
45791 AT * 11 20/22 AT CT AT AT AT AT AT AT AT AT AA
65575 TA * 10 18/20 TA TA TA AA TA TT TA TA TA TA
94429 AC * 10 18/20 AC AC AC GC AC AC AC GC AC AC
114788 AT * 13 25/26 AT AT AA AT AT AT AT AT AT AT AT AT AT
115413 AT * 10 18/20 AT AT AT AT AT GT AT AT GT AT
131521 AG * 10 18/20 AG AG AG TG GG AG AG AG AG AG
136093 AC * 10 18/20 AC AC AC GC AC AC AC AC AC TC
142996 GT * 10 18/20 GT GC GT GT GC GT GT GT GT GT
144722 CA * 10 19/20 CA CA CA CA CA CA CA CA CA CG
145626 CT * 13 24/26 CT CT CT CT CT TT CT CT CT CT CT CT GT
145930 TG * 10 18/20 TG TG TG TT TG TG TG GG TG TG
153537 GT * 10 18/20 GT GT GT GT GC GT GT GT GT AT
153703 CA * 11 20/22 CA AG CA CA CA CA CA CA CA CA CA
155421 AT * 11 20/22 AT AA AT AT AT AT AT AT AT TT AT
159430 TG * 10 18/20 TG TG TG TG TG TG TG TG TG CT
163112 TA * 10 18/20 TA TC TA TA TA CA TA TA TA TA
163293 AC * 12 22/24 AC AC AC AA AC AC AC AC AC AC AC AT
163920 TA * 16 29/32 TA TA TA TA TC TA TA TA TA TA TA TA TA TA CA TG
164323 AC * 10 18/20 AC AC AT AC AC AC AC AT AC AC
166451 AT * 12 22/24 AT AT AT AT AT AT AT AT AT AT GA AT
183916 CA * 15 27/30 CA CA CA CA CA CA CA CA CA CA TA GA CA CA CT
184046 CA * 11 20/22 CA CT CA CA CA CA CA CA CA CA TA
186013 AT * 10 18/20 AT AT AT AT AT AA AT AC AT AT
197059 GT * 11 20/22 GT GT CT GT GT GG GT GT GT GT GT
202009 CA * 21 39/42 CA TA CA CA AA CA CA CA CA CA CA CA CA CA CA CA CA CT CA CA CA
202832 AT * 16 29/32 AT AT GC AT AT AT AT AT AT AT AT AT AT AT AT AC
221139 AT * 13 24/26 AT AT AT AT AT AT AT AT AT AT CT AT AC
-----------------------------------------------------------------------------------------
Total sequence length......................... 261895
Total number of repeats detected.............. 32
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 7 2 1 0 4 4 4 3 0 2 0 0
15 to 19 1 1 0 0 0 1 1 0 0 0 0 0
20 to 24 0 0 0 0 0 1 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 8 3 1 0 4 6 5 3 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
8 AT + 3 TA = 11
1 AG + 0 GA + 2 CT + 0 TC = 3
3 GT + 5 TG + 6 CA + 4 AC = 18
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7303717|gb|AE003829.1|AE003829 Drosophila melanogaster genomic scaffold 142000013386047 section 39 of 52, complete sequence
Position Repeat Coverage Repeat
10687 AG * 14 26/28 AG AG AG TG AG AG AG AG AG AG GG AG AG AG
20814 AC * 13 24/26 AC AC AA AC AC AC AC AC AC AC AC AC AG
25520 GT * 11 20/22 GT AT GT GT GT GT GT GT GT GT GG
32687 TG * 10 18/20 TG TG TG TG TG TG TG TG TG CA
32873 CT * 12 22/24 CT CT TT CT CA CT CT CT CT CT CT CT
43640 AT * 11 20/22 AT AT AT AT AC AT AT GT AT AT AT
44728 CA * 13 24/26 CA CA AA CA CA CA CA CA CA TA CA CA CA
45923 TG * 12 22/24 TG CA TG TG TG TG TG TG TG TG TG TG
47494 CA * 10 18/20 CA CA CA CA TA CA CA CT CA CA
48113 CA * 10 18/20 CA CA CA CA CA CA CA CA AA CT
53870 GT * 15 27/30 GT GT GT GT GT GT GT GT GT TT GT GT TT GT GG
58889 GT * 10 18/20 GT GT GT GT GT GA GT GT GC GT
60332 CA * 11 20/22 CA CT CA CA CA CA CA CA AA CA CA
62266 TG * 10 19/20 TG TG TG TG TG TG TG TG TG AG
62542 GA * 10 18/20 GA GA GC GA GA GA GA GA GA TA
64219 AC * 10 18/20 AC AC AC GC AC AT AC AC AC AC
70463 AG * 10 18/20 AG TG AG AG AG AG AG TG AG AG
71025 CA * 10 18/20 CA CA CG TA CA CA CA CA CA CA
73835 GA * 10 19/20 GA GA GA GA GA GA GA GA GC GA
75088 CT * 12 22/24 CT CT CT CT CT CT CT CT GT CT CT AT
77181 CT * 18 33/36 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CG CA CT CG
79568 CA * 11 20/22 CA AA CA TA CA CA CA CA CA CA CA
80667 TG * 12 22/24 TG TA TG TG TG TG TG TG TG TG TA TG
83828 AC * 11 20/22 AC AC AC AC AC AC GC AC AC AC AA
84166 CA * 11 20/22 CA CA CG CA CA CA CA CA CA AA CA
90543 GT * 10 18/20 GT GT GT GT GT GT GT GT TT CT
90895 GT * 10 18/20 GT GT GT GT AT GT GT GT GT GC
110745 AT * 11 21/22 AT AT TT AT AT AT AT AT AT AT AT
113496 TC * 15 27/30 TC TC TG CC TC TC TC TC TC TC TC TC TC TC TA
113810 AC * 16 29/32 AC AC AC AC AC AC AC AC AC AA AC AA AC AC AC GC
115205 GT * 12 22/24 GT GC CT GT GT GT GT GT GT GT GT GT
115672 AT * 12 22/24 AT AC AT AT AT AT AT AT AT AT AT AC
116872 AT * 10 18/20 AT AT AT AT AT AT AT AT AC AC
122602 GA * 10 18/20 GA AA GA GA GA GA GA GA GA GT
124719 AT * 16 29/32 AT AT AA AT AT AT AT AA AT AT AT AT AT AT AT AN
130827 CA * 12 22/24 CA CA CA CA CA CA CA CA CA GA TA CA
132299 TA * 11 20/22 TA CA CA TA TA TA TA TA TA TA TA
147574 GT * 10 19/20 GT GT GT GT GT GT GT GT GT GC
166757 AT * 18 33/36 AT AT TT AT AT AT AT GT AT AT AT AT AT AT AT AT GT AT
168599 CA * 18 34/36 CA CA CA CA CA CA CA CT CA CA CA CT CA CA CA CA CA CA
171629 TA * 13 24/26 TA TA TA TA TA TT TA TA TA AA TA TA TA
176241 AT * 12 22/24 AT GT AT AT AC AT AT AT AT AT AT AT
215807 AT * 10 19/20 AT CT AT AT AT AT AT AT AT AT
226265 TG * 12 22/24 TG TG TC TG TG TG TG TG TG TG AG TG
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Total sequence length......................... 258492
Total number of repeats detected.............. 44
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Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
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Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 6 2 2 3 3 8 5 6 0 2 0 0
15 to 19 2 0 0 0 1 1 0 1 1 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
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Total 8 2 2 3 4 9 5 7 1 3 0 0
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Frequency distribution of different di-nucleotide repeat classes
8 AT + 2 TA = 10
2 AG + 3 GA + 3 CT + 1 TC = 9
7 GT + 5 TG + 9 CA + 4 AC = 25
0 GC + 0 CG = 0
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Genomic Sequence:..
gi|73