Di-Nucleotide Repeats in Genomic Sequences
Di-Nucleotide Repeats in
Drosophila melanogaster Chromosome-Arm-2R Genomic Scaffolds
Genomic Sequence:..
gi|7289019|gb|AE002937.1|AE002937 Drosophila melanogaster genomic scaffold 142000013385320, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 3612
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289079|gb|AE003017.1|AE003017 Drosophila melanogaster genomic scaffold 142000013385367, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 19141
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289475|gb|AE003048.1|AE003048 Drosophila melanogaster genomic scaffold 142000013385699, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 29176
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289453|gb|AE003279.1|AE003279 Drosophila melanogaster genomic scaffold 142000013385680, complete sequence
Position Repeat Coverage Repeat
4260 AT * 11 20/22 AT AT AT AT AT AT AT AT AT CT TT
-----------------------------------------------------------------------------------------
Total sequence length......................... 7951
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 0 0 0 0 0 0 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 0 TA = 1
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 0 TG + 0 CA + 0 AC = 0
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289112|gb|AE003322.1|AE003322 Drosophila melanogaster genomic scaffold 142000013385396, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 43718
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289300|gb|AE002594.1|AE002594 Drosophila melanogaster genomic scaffold 142000013385553, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 11918
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289520|gb|AE002621.1|AE002621 Drosophila melanogaster genomic scaffold 142000013385737, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 2655
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289039|gb|AE002630.1|AE002630 Drosophila melanogaster genomic scaffold 142000013385333, complete sequence
Position Repeat Coverage Repeat
6442 AT * 10 18/20 AT AA AT AT AT AT AT GT AT AT
6470 AT * 12 22/24 AT AT AT AT AC AT AT GT AT AT AT AT
6499 TA * 12 22/24 TA TA TG TA TG TA TA TA TA TA TA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 12312
Total number of repeats detected.............. 3
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 1 0 0 0 0 0 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 1 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 1 TA = 3
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 0 TG + 0 CA + 0 AC = 0
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7288934|gb|AE002639.1|AE002639 Drosophila melanogaster genomic scaffold 142000013385246, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 13170
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289090|gb|AE002666.1|AE002666 Drosophila melanogaster genomic scaffold 142000013385377, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 24153
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7288943|gb|AE002691.1|AE002691 Drosophila melanogaster genomic scaffold 142000013385255, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 32417
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7288917|gb|AE002726.1|AE002726 Drosophila melanogaster genomic scaffold 142000013385230, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1893
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289853|gb|AE002751.1|AE002751 Drosophila melanogaster genomic scaffold 142000013386031, complete sequence
Position Repeat Coverage Repeat
3617 TG * 13 24/26 TG TA TG TG TG TG TG TG TG TG TG TG TA
33338 TA * 10 18/20 TA TA TA TA AG TA TA TA TA TA
33384 TA * 11 20/22 TA TA TA TA TA AG TA TA TA TA TA
33434 AT * 12 22/24 AT AT AT AT AT AG GT AT AT AT AT AT
33461 TA * 11 20/22 TA TA TA TA TA AG TA TA TA TA TA
33487 TA * 12 22/24 TA TA TA TA TA AG TA TA TA TA TA TA
33513 TA * 12 22/24 TA TA TA TA TA AG TA TA TA TA TA TA
33539 TA * 12 22/24 TA TA TA TA TA AG TA TA TA TA TA TA
33565 TA * 12 22/24 TA TA TA TA TA AG TA TA TA TA TA TA
33591 TA * 12 22/24 TA TA TA TA TA AG TA TA TA TA TA TA
33617 TA * 12 22/24 TA TA TA TA TA AG TA TA TA TA TA TA
33644 TA * 12 22/24 TA TA TA TA TA AG TA TA TA TA TA TA
33670 TA * 12 22/24 TA TA TA TA TA AG TA TA TA TA TA TA
33696 TA * 12 22/24 TA TA TA TA TA AG TA TA TA TA TA TA
33722 TA * 12 22/24 TA TA TA TA TA AG TA TA TA TA TA TA
33748 TA * 10 18/20 TA TA TA TA TA AG TA TA TA TA
92288 AT * 12 22/24 AT AT AT AT AT AA AT AT AT AA AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 107231
Total number of repeats detected.............. 17
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 14 0 0 0 0 1 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 14 0 0 0 0 1 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 14 TA = 16
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 1 TG + 0 CA + 0 AC = 1
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289862|gb|AE002760.1|AE002760 Drosophila melanogaster genomic scaffold 142000013386034, complete sequence
Position Repeat Coverage Repeat
59529 AT * 10 19/20 AT AT AT AT AT AT CT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 62674
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 0 0 0 0 0 0 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 0 TA = 1
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 0 TG + 0 CA + 0 AC = 0
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289517|gb|AE002761.1|AE002761 Drosophila melanogaster genomic scaffold 142000013385734, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 4416
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289299|gb|AE002770.1|AE002770 Drosophila melanogaster genomic scaffold 142000013385552, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 32269
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289417|gb|AE002806.1|AE002806 Drosophila melanogaster genomic scaffold 142000013385651, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 3603
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289767|gb|AE002892.1|AE002892 Drosophila melanogaster genomic scaffold 142000013385959, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 16864
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7288929|gb|AE002919.1|AE002919 Drosophila melanogaster genomic scaffold 142000013385241, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 3000
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289383|gb|AE002935.1|AE002935 Drosophila melanogaster genomic scaffold 142000013385620, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 21261
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7288949|gb|AE002944.1|AE002944 Drosophila melanogaster genomic scaffold 142000013385261, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1824
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7288953|gb|AE002952.1|AE002952 Drosophila melanogaster genomic scaffold 142000013385263, complete sequence
Position Repeat Coverage Repeat
3583 TC * 10 18/20 TC GC TC TC AC TC TC TC TC TC
-----------------------------------------------------------------------------------------
Total sequence length......................... 14708
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 0 0 0 0 0 0 0 1 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 0 0 0 0 0 0 0 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 0 TA = 0
0 AG + 0 GA + 0 CT + 1 TC = 1
0 GT + 0 TG + 0 CA + 0 AC = 0
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289359|gb|AE002960.1|AE002960 Drosophila melanogaster genomic scaffold 142000013385601, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 19947
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289183|gb|AE002968.1|AE002968 Drosophila melanogaster genomic scaffold 142000013385462, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 3372
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289437|gb|AE002976.1|AE002976 Drosophila melanogaster genomic scaffold 142000013385668, complete sequence
Position Repeat Coverage Repeat
12679 TA * 10 18/20 TA TA TA TA CA TA TG TA TA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 43487
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 1 0 0 0 0 0 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 1 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 1 TA = 1
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 0 TG + 0 CA + 0 AC = 0
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289322|gb|AE002980.1|AE002980 Drosophila melanogaster genomic scaffold 142000013385568, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 19750
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289200|gb|AE002984.1|AE002984 Drosophila melanogaster genomic scaffold 142000013385479, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 26448
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289372|gb|AE002992.1|AE002992 Drosophila melanogaster genomic scaffold 142000013385609, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 13643
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289348|gb|AE003000.1|AE003000 Drosophila melanogaster genomic scaffold 142000013385592, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 17194
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289338|gb|AE003008.1|AE003008 Drosophila melanogaster genomic scaffold 142000013385583, complete sequence
Position Repeat Coverage Repeat
15772 TG * 12 23/24 TG TA TG TG TG TG TG TG TG TG TG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 26058
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 0 0 0 0 0 1 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 0 0 0 0 0 1 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 0 TA = 0
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 1 TG + 0 CA + 0 AC = 1
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289553|gb|AE003016.1|AE003016 Drosophila melanogaster genomic scaffold 142000013385767, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1073
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7288979|gb|AE003024.1|AE003024 Drosophila melanogaster genomic scaffold 142000013385289, complete sequence
Position Repeat Coverage Repeat
4232 TA * 13 24/26 TA TA TT TA TA TA TA TA TA TT TA TA TA
43848 TG * 10 18/20 TG TG TG TG TG TG TG TG TG AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 59055
Total number of repeats detected.............. 2
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 1 0 0 0 0 1 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 1 0 0 0 0 1 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 1 TA = 1
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 1 TG + 0 CA + 0 AC = 1
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289342|gb|AE003032.1|AE003032 Drosophila melanogaster genomic scaffold 142000013385587, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 29994
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289208|gb|AE003035.1|AE003035 Drosophila melanogaster genomic scaffold 142000013385487, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1546
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289130|gb|AE003040.1|AE003040 Drosophila melanogaster genomic scaffold 142000013385414, complete sequence
Position Repeat Coverage Repeat
37763 TA * 12 22/24 TA TA TA TA TA TA TA TA CA AA TA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 55603
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 1 0 0 0 0 0 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 1 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 1 TA = 1
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 0 TG + 0 CA + 0 AC = 0
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289411|gb|AE002589.1|AE002589 Drosophila melanogaster genomic scaffold 142000013385645, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1058
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289416|gb|AE002607.1|AE002607 Drosophila melanogaster genomic scaffold 142000013385650, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1239
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289156|gb|AE002648.1|AE002648 Drosophila melanogaster genomic scaffold 142000013385436, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 4403
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289408|gb|AE002686.1|AE002686 Drosophila melanogaster genomic scaffold 142000013385643, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1527
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289468|gb|AE003001.1|AE003001 Drosophila melanogaster genomic scaffold 142000013385692, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1019
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289446|gb|AE003056.1|AE003056 Drosophila melanogaster genomic scaffold 142000013385676, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 22669
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289145|gb|AE003064.1|AE003064 Drosophila melanogaster genomic scaffold 142000013385425, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 22016
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289388|gb|AE003195.1|AE003195 Drosophila melanogaster genomic scaffold 142000013385624, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1511
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289263|gb|AE002709.1|AE002709 Drosophila melanogaster genomic scaffold 142000013385535, complete sequence
Position Repeat Coverage Repeat
285 TA * 11 20/22 TA CA TA TA TA TA TA TA TA TA CA
8938 TA * 10 18/20 TA TA TA TA TA TA TA AA TA AA
-----------------------------------------------------------------------------------------
Total sequence length......................... 40796
Total number of repeats detected.............. 2
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 2 0 0 0 0 0 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 2 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 2 TA = 2
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 0 TG + 0 CA + 0 AC = 0
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289785|gb|AE003073.1|AE003073 Drosophila melanogaster genomic scaffold 142000013385973, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 3738
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289275|gb|AE002640.1|AE002640 Drosophila melanogaster genomic scaffold 142000013385546, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 2000
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289053|gb|AE002788.1|AE002788 Drosophila melanogaster genomic scaffold 142000013385347, complete sequence
Position Repeat Coverage Repeat
13009 AT * 10 18/20 AT AT AT TT AC AT AT AT AT AT
14004 AT * 10 18/20 AT AT AT AT AT GA AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 19182
Total number of repeats detected.............. 2
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 0 0 0 0 0 0 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 0 TA = 2
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 0 TG + 0 CA + 0 AC = 0
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289057|gb|AE003081.1|AE003081 Drosophila melanogaster genomic scaffold 142000013385349, complete sequence
Position Repeat Coverage Repeat
892 TG * 10 18/20 TG TG TA TG TG TG TG TA TG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 12708
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 0 0 0 0 0 1 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 0 0 0 0 0 1 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 0 TA = 0
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 1 TG + 0 CA + 0 AC = 1
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289223|gb|AE003090.1|AE003090 Drosophila melanogaster genomic scaffold 142000013385502, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 38153
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7316105|gb|AE002769.1|AE002769 Drosophila melanogaster genomic scaffold 142000013386052, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7302256|gb|AE003788.1|AE003788 Drosophila melanogaster genomic scaffold 142000013386052 section 5 of 5, complete sequence
Position Repeat Coverage Repeat
65187 AT * 10 18/20 AT AT AT AT AT AT AA AT AT AA
-----------------------------------------------------------------------------------------
Total sequence length......................... 128817
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 0 0 0 0 0 0 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 0 TA = 1
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 0 TG + 0 CA + 0 AC = 0
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7302239|gb|AE003787.1|AE003787 Drosophila melanogaster genomic scaffold 142000013386052 section 4 of 5, complete sequence
Position Repeat Coverage Repeat
41057 AT * 10 18/20 AT AT AT AT AC AT AT GT AT AT
266006 TA * 16 29/32 TA TA TA TA TA TA TA TA TA TA TA TA TA TA CA GT
271029 TA * 10 18/20 TA TA TA TA TG CA TA TA TA TA
301892 AG * 12 22/24 AG GA AG AG AG AG AG AG AG AG AG AG
-----------------------------------------------------------------------------------------
Total sequence length......................... 307228
Total number of repeats detected.............. 4
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 1 1 0 0 0 0 0 0 0 0 0
15 to 19 0 1 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 2 1 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 2 TA = 3
1 AG + 0 GA + 0 CT + 0 TC = 1
0 GT + 0 TG + 0 CA + 0 AC = 0
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7302231|gb|AE003786.1|AE003786 Drosophila melanogaster genomic scaffold 142000013386052 section 3 of 5, complete sequence
Position Repeat Coverage Repeat
61015 AC * 10 18/20 AC TT AC AC AC AC AC AC AC AC
74516 AC * 10 18/20 AC TT AC AC AC AC AC AC AC AC
81179 AC * 10 18/20 AC AC AC AC AC AC AC AT AC AT
134178 AC * 10 18/20 AC AC AC AC AC AC AC AT AC AT
140069 AC * 10 18/20 AC AC AC AC AC AC AC AT AC AT
140686 TA * 11 20/22 TA AT TA TA TA TA TA TA TA TA TA
148010 AG * 10 18/20 AG AG AG AG AG AG AG AG AG CT
158153 GA * 11 20/22 GA CA GA AA GA GA GA GA GA GA GA
158467 AG * 11 20/22 AG AG AG AG AG AG AG CA AG AG AG
158741 GA * 15 27/30 GA CA GA GA GA GA GA GA GA GC GA GA GA GA TA
159017 GA * 10 18/20 GA CA GA GA GA GA GA GA GA GC
160558 TA * 10 18/20 TA CA TA TA TA TA TA TA TA AA
190911 AT * 10 18/20 AT AT AT AT AT AT AT AT TT TT
261779 AT * 10 18/20 AT AT AC AT AT AT AC AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 316735
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 2 2 2 5 0 0 0 0 0 0 0
15 to 19 0 0 0 1 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 2 2 3 5 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 2 TA = 4
2 AG + 3 GA + 0 CT + 0 TC = 5
0 GT + 0 TG + 0 CA + 5 AC = 5
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7302205|gb|AE003785.1|AE003785 Drosophila melanogaster genomic scaffold 142000013386052 section 2 of 5, complete sequence
Position Repeat Coverage Repeat
888 TA * 10 18/20 TA TA TA TA TT TT TA TA TA TA
32471 GT * 11 20/22 GT GT GT GT GT GT GT GT TT GT GG
51287 CA * 11 21/22 CA CA CA CT CA CA CA CA CA CA CA
65348 AC * 11 20/22 AC AC AC AC AC AA AC AC AC AC GC
93878 TA * 10 18/20 TA TA TC TA TA TA TA TA TA AA
106689 TG * 10 19/20 TG TG TG TG TG TG TG TG CG TG
129368 AC * 13 24/26 AC AC AC GC AC AC AC AC AC AC AC TC AC
171696 AG * 18 33/36 AG AG AG AG AG AG AG AG AG AG AG AG AG CG TG GG AG AG
213113 TG * 10 18/20 TG TA TG TG TG TG TG TG TA TG
222095 TA * 16 29/32 TA TA TA TA TA TA TA TA TA TA TA TA TA TT AA TT
228041 TA * 12 22/24 TA TA TA AA TA TT TA TA TA TA TA TA
244761 AT * 10 18/20 AT AT AT AG AT AT AT TT AT AT
261236 GT * 16 29/32 GT GT GT GT GT GT GT GT GT GT GT GT GC CT TT GT
281492 AT * 11 20/22 AT AT AT AT AT AT AT AA AT AT AA
-----------------------------------------------------------------------------------------
Total sequence length......................... 296279
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 3 0 0 2 1 2 1 0 0 0 0
15 to 19 0 1 1 0 0 0 0 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 4 1 0 2 1 2 2 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 4 TA = 6
1 AG + 0 GA + 0 CT + 0 TC = 1
2 GT + 2 TG + 1 CA + 2 AC = 7
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7302167|gb|AE003784.1|AE003784 Drosophila melanogaster genomic scaffold 142000013386052 section 1 of 5, complete sequence
Position Repeat Coverage Repeat
20504 TC * 11 20/22 TC TT TC TC TC TC TC TC TC TC GC
52842 TA * 10 18/20 TA TA TG AA TA TA TA TA TA TA
60271 AT * 10 18/20 AT AT AT AC AT AT GT AT AT AT
61911 AT * 29 53/58 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TC AT AT AC AT AT GT GT AT
79508 TA * 10 18/20 TA TA TC TA TA TC TA TA TA TA
100320 CT * 10 18/20 CT CT CT TT CT CC CT CT CT CT
141098 GT * 10 18/20 GT AT GT CT GT GT GT GT GT GT
142824 TA * 11 20/22 TA TA TA TA TG TA TA TA TA TA TT
168693 TA * 18 33/36 TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA AA CA TA
220966 GT * 10 18/20 GT GT GA GT GT GT GT GT GT GC
221367 TA * 10 18/20 TA TA TA TT TA TA TA TA TG TA
233088 TA * 12 22/24 TA TA TA TA CA TA TA TA TA TA TG TA
261698 AT * 10 19/20 AT GT AT AT AT AT AT AT AT AT
279597 TA * 10 18/20 TA TA TA TT TA TA TA TA CA TA
300317 TA * 10 18/20 TA TA TA TG TA TA TA TA TA TT
304288 TA * 11 20/22 TA TA TT AA TA TA TA TA TA TA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 313072
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 8 0 0 0 0 0 2 1 1 0 0
15 to 19 0 1 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 1 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 9 0 0 0 0 0 2 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 9 TA = 12
0 AG + 0 GA + 1 CT + 1 TC = 2
2 GT + 0 TG + 0 CA + 0 AC = 2
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289017|gb|AE003098.1|AE003098 Drosophila melanogaster genomic scaffold 142000013385318, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 24781
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7316098|gb|AE002778.1|AE002778 Drosophila melanogaster genomic scaffold 142000013386042, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7302304|gb|AE003790.1|AE003790 Drosophila melanogaster genomic scaffold 142000013386042 section 2 of 2, complete sequence
Position Repeat Coverage Repeat
7120 GT * 10 18/20 GT GT GT GT GT GC TT GT GT GT
11114 AT * 20 36/40 AT AT AT AT AT AT AC AT AT TT AT AT AT AT AT AT AT AT AT TG
21281 CA * 15 27/30 CA CA CA CA CG CA CA CG CA CA CA CA CA CA GA
32653 GT * 10 18/20 GT GT GT TT GT GT GT GT GT GC
37725 GA * 18 33/36 GA GA TA GA GA GA GA GA CA GA GA GA GA GA GA GA GA GC
48604 TG * 12 22/24 TG TG TG TG CG TG TG TG TG TG TG TA
49209 TG * 10 19/20 TG TG TG TG TG TG TG TG TT TG
77632 AT * 16 29/32 AT AT AT CT AT CT AT AT AT AT AT AT AT AT AT CT
103007 CA * 10 19/20 CA CA CA CA CA CA CA CA CA CG
121996 GT * 11 20/22 GT GT GT GT GT GT GT GG GT GT GG
-----------------------------------------------------------------------------------------
Total sequence length......................... 210451
Total number of repeats detected.............. 10
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 0 0 0 0 1 2 3 0 0 0 0
15 to 19 1 0 0 1 0 1 0 0 0 0 0 0
20 to 24 1 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 0 0 1 0 2 2 3 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 0 TA = 2
0 AG + 1 GA + 0 CT + 0 TC = 1
3 GT + 2 TG + 2 CA + 0 AC = 7
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7302263|gb|AE003789.1|AE003789 Drosophila melanogaster genomic scaffold 142000013386042 section 1 of 2, complete sequence
Position Repeat Coverage Repeat
11252 CA * 10 18/20 CA CA CA CT CA CA CA CA CA GA
45199 AT * 12 22/24 AT AT AT AT AT AT AT AT AT AC AT AA
54054 TG * 10 18/20 TG TG TG TG TG TG TG TG AG AG
76185 GT * 16 29/32 GT GT GT GT GT GT GT GT GT GT GT GT GT GA AT AT
76962 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GT GA AT GT
115076 CT * 10 18/20 CT CT CT CA CT CA CT CT CT CT
115389 AT * 16 29/32 AT AT AT AC AT AT AT AT AT AT AT AT AC AT AC AT
118576 AT * 12 22/24 AT GT AT AC AT AT AT AT AT AT AT AT
120300 TG * 10 18/20 TG CG TG TA TG TG TG TG TG TG
135199 AT * 10 18/20 AT AT AT AT TT AT AT AT AT AA
135573 TG * 11 20/22 TG TA TG TG TG TG TG TG TG TG TT
135600 TG * 10 18/20 TG TG TG TG TG TG TG TG AA TG
137428 CT * 10 18/20 CT CG CT CT CT CT CT CT CT CG
145332 AG * 10 18/20 AG CA AG AG AG AG AG AG AG AG
222201 AT * 13 24/26 AT AT GT AT AT AT AT AT AT AT AT AT AC
258114 GT * 11 20/22 GT GT GT GT GT GT GT GC GT GC GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 298904
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 0 1 0 0 1 4 2 0 2 0 0
15 to 19 1 0 0 0 0 0 0 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 0 1 0 0 1 4 3 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 0 TA = 5
1 AG + 0 GA + 2 CT + 0 TC = 3
3 GT + 4 TG + 1 CA + 0 AC = 8
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7316102|gb|AE002787.1|AE002787 Drosophila melanogaster genomic scaffold 142000013386047, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7304243|gb|AE003842.1|AE003842 Drosophila melanogaster genomic scaffold 142000013386047 section 52 of 52, complete sequence
Position Repeat Coverage Repeat
381 GA * 10 18/20 GA GC GA GA GA GA GA GG GA GA
28292 AT * 10 18/20 AT AT AT AT AT GT AT AT AT GT
65580 CA * 13 24/26 CA CA CA GA CA CA CA CA CA CA CA CA CG
81933 CA * 11 20/22 CA CA CT CA CA CA CA CA CG CA CA
82778 CA * 11 20/22 CA CA CA CA CA CA CA CA CT CA CG
82957 TC * 11 20/22 TC TC TC GC TC TC TC GC TC TC TC
86357 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC AC AA AT
92991 GT * 10 18/20 GT TG GT GT GT GT GT GT GT GT
112327 CA * 13 25/26 CA CA CA CA CA CA CA CA CA CA CA CA CT
115793 AC * 14 26/28 AC AC AC AC AC AC AC AC AC AC AC AC AT TC
138956 TG * 10 18/20 TG TG TT TG TG TG TG TA TG TG
152888 TG * 12 22/24 TG TG TG AG TG TG TG TG TG TG AG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 252413
Total number of repeats detected.............. 12
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 0 0 1 2 4 2 1 1 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 0 0 1 2 4 2 1 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 0 TA = 1
0 AG + 1 GA + 0 CT + 1 TC = 2
1 GT + 2 TG + 4 CA + 2 AC = 9
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7304203|gb|AE003841.1|AE003841 Drosophila melanogaster genomic scaffold 142000013386047 section 51 of 52, complete sequence
Position Repeat Coverage Repeat
16066 CA * 15 27/30 CA CA CA CA CA CA CA CA CA CA CA CA CA CT TC
27950 AG * 18 33/36 AG AG AG AG AG AT AG AG AG AG AG AG AG AG AG CG AG CG
28597 GT * 13 24/26 GT GT GT GT AT GT GT GT GT CT GT GT GT
34943 AC * 11 20/22 AC AC AT GC AC AC AC AC AC AC AC
37716 AT * 12 22/24 AT AT AT AT AT AT AT AT AT AT AC AA
98057 CA * 16 30/32 CA CA CA CA CA CA CA CA CA CA CA CA CA CA TA GA
108669 TA * 11 20/22 TA TA TA TA TA TA TA TA TA TG AA
109575 GT * 15 28/30 GT GC GT GT GT GT GT GT AT GT GT GT GT GT GT
134756 GA * 10 18/20 GA GA GG GA GA GA GA GA GA GC
135826 GT * 11 20/22 GT CA GT GT GT GT GT GT GT GT GT
136003 TG * 10 18/20 TG TG TG TG TG TG TG TG AG TC
189812 CT * 17 31/34 CT CT CT CT CT CT CT CT CT CT GT CT CT CT CA CA CT
191410 TA * 12 22/24 TA TA TA TA TA TA TA TA TA TA TT TC
222121 AT * 11 20/22 AT AT AT AA AT AT AT CT AT AT AT
225939 CT * 11 20/22 CT CT CT CT CA CT CT CT CT CT AT
247465 TA * 12 22/24 TA TA TA TA TA TA TA TA TA TA TA GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 262082
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 3 0 1 1 0 1 2 0 1 0 0
15 to 19 0 0 1 0 0 2 0 1 0 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 3 1 1 1 2 1 3 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 3 TA = 5
1 AG + 1 GA + 2 CT + 0 TC = 4
3 GT + 1 TG + 2 CA + 1 AC = 7
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7304160|gb|AE003840.1|AE003840 Drosophila melanogaster genomic scaffold 142000013386047 section 50 of 52, complete sequence
Position Repeat Coverage Repeat
4803 CA * 12 23/24 CA GA CA CA CA CA CA CA CA CA CA CA
19519 AC * 15 27/30 AC AC AC AC AC AC AC AC AC AC AC AC AA AG GC
19724 CA * 12 22/24 CA CA GA TA CA CA CA CA CA CA CA CA
20614 TG * 13 24/26 TG AG TT TG TG TG TG TG TG TG TG TG TG
22358 TG * 12 22/24 TG TG TG TG TG TG TG TG TG CG TG AG
23188 AT * 12 22/24 AT AC AT AT AT AT AT AT AT AT AT AC
25762 CT * 22 40/44 CT CT CT CT CT CT CC CT CT CT CT CT CT CT CG CT CG CT CT TT CT CT
27573 AT * 11 20/22 AT AT AT AT AT AT AC AT AT GT AT
31757 AT * 10 18/20 AT AT AT AA AT AT AT AT AG AT
35869 AC * 12 22/24 AC AC GC AC AC AC TC AC AC AC AC AC
36066 TG * 16 29/32 TG CG TG TG TG TG TG TG TG TG TG TG TG TG TG CC
38516 CA * 13 24/26 CA CA CA CA CA CA CA CA CG CA CG CA CA
39620 CT * 10 18/20 CT CT CT CT CT TG CT CT CT CT
42922 AT * 13 24/26 AT TT AT AT AT AT AT AT AT AT AT AT GT
44288 CA * 10 18/20 CA CA CA CA CA CA CA TA CA CC
44308 AC * 20 36/40 AC AC AC AA AC AC AA AC AC AC AC AC AC AC AC AC AC AA AC AA
46065 CA * 11 20/22 CA CA CC AA CA CA CA CA CA CA CA
46477 TG * 13 24/26 TG TG TG TG TG TT TG TG TG TG AG TG TG
50919 AT * 17 31/34 AT AT AT AT AT AA AT AT AT AT AT AC AT AT AT AT AG
60813 TA * 13 24/26 TA TA CA TA TA TA TA TG TA TA TA TA TA
72567 AC * 10 18/20 AC AC AC AC AC AC CG AC AC AC
82035 CT * 11 20/22 CT AG CT CT CT CT CT CT CT CT CT
88483 CT * 21 38/42 CT CT CT CT CT CT CT CT CT CT CT TT CT CT AT CT AT CT CT CT TT
88717 GA * 13 24/26 GA GA TA GA GA GA GA GA GA GA GA GA GC
148905 CT * 11 20/22 CT GC CT CT CT CT CT CT CT CT CT
152975 AT * 10 18/20 AT AT AT AA AT AT AT AT AT CT
155041 GT * 11 20/22 GT GT GC GT GT GT GT AT GT GT GT
169921 AT * 10 18/20 AT AC AT AT AT GT AT AT AT AT
192068 TA * 11 20/22 TA TA TA TA TG TA CA TA TA TA TA
213590 AT * 26 47/52 AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TG GT AG
221842 GT * 11 20/22 GT GT GT GT CT GT GT GT CT GT GT
225055 TG * 10 18/20 TG TG TG CG TG TG TG TG TG TT
230561 TG * 10 18/20 TG TC TC TG TG TG TG TG TG TG
234842 TG * 10 18/20 TG TG TG TG TG TG TG TG GG AG
235746 TA * 13 24/26 TA AA TA TA TA TA TA TA TA TA TA TA TC
-----------------------------------------------------------------------------------------
Total sequence length......................... 259764
Total number of repeats detected.............. 35
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 6 3 0 1 2 5 6 2 0 3 0 0
15 to 19 1 0 0 0 1 0 1 0 0 0 0 0
20 to 24 0 0 0 0 1 0 0 0 0 2 0 0
25 to 29 1 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 8 3 0 1 4 5 7 2 0 5 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
8 AT + 3 TA = 11
0 AG + 1 GA + 5 CT + 0 TC = 6
2 GT + 7 TG + 5 CA + 4 AC = 18
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7304109|gb|AE003839.1|AE003839 Drosophila melanogaster genomic scaffold 142000013386047 section 49 of 52, complete sequence
Position Repeat Coverage Repeat
21854 CA * 13 25/26 CA CC CA CA CA CA CA CA CA CA CA CA CA
25337 TG * 10 18/20 TG TT TG TG TG TG TG TG TG CG
55150 GT * 10 18/20 GT AT GT GT GT GT GT GT GT AT
77799 AT * 11 20/22 AT TG AT AT AT AT AT AT AT AT AT
78828 TG * 11 20/22 TG TG TG TG TA TG TG CG TG TG TG
126733 AC * 11 20/22 AC AC AC AC AC AC AC AC AT GC AC
150403 GT * 16 29/32 GT GT GT GT GT GT GT GT GT GT GA GT GT GT CT AT
153968 AC * 10 18/20 AC AC AC AC AC AC AC AC AC GT
156120 TG * 17 31/34 TG TG AG TG TG TG TG CG TG TG TG TG TG TG TG TG GG
157104 TG * 15 27/30 TG CT TG TG TG TG TG TG TG TG TG TG TG TG CG
163752 GT * 13 24/26 GT GC GT GT GT GT GT GT GT GT GT GG GT
164783 CA * 16 29/32 CA CA CG CA CA CA CA CA CA CA CA CA CA CA TA CT
184095 AC * 12 23/24 AC AC AC GC AC AC AC AC AC AC AC AC
186646 TG * 11 21/22 TG TG TG TG TG TG TG TG TA TG TG
190991 AC * 12 22/24 AC AC TC GC AC AC AC AC AC AC AC AC
191677 CA * 13 25/26 CA CA CA CA CA CA CA CA CA CA CA CT CA
191792 CA * 12 22/24 CA CA CA CA CA CA CA CA CA TA CA TA
191961 CA * 18 33/36 CA CA CA CA CA CA CA CA CA CA CA CG CA CA CA CA TA AA
195037 CT * 11 20/22 CT CT CT CT CT CT CT CT CT CT TC
196851 TG * 10 18/20 TG TG TC TG TG TG TG TG TG GG
203490 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GC GT GT GG
236310 CA * 10 18/20 CA CT AA CA CA CA CA CA CA CA
240053 AT * 10 18/20 AT AT AT TA AT AT AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 261850
Total number of repeats detected.............. 23
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 0 0 0 4 4 4 3 0 1 0 0
15 to 19 0 0 0 0 0 2 2 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 0 0 0 4 6 6 4 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 0 TA = 2
0 AG + 0 GA + 1 CT + 0 TC = 1
4 GT + 6 TG + 6 CA + 4 AC = 20
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7304068|gb|AE003838.1|AE003838 Drosophila melanogaster genomic scaffold 142000013386047 section 48 of 52, complete sequence
Position Repeat Coverage Repeat
4204 TG * 12 22/24 TG TA TG TG TG TG TG TG TG TG TG AG
5364 CA * 14 26/28 CA CA CA CA CA CA CA CA CA CA CA CC CG CA
6606 GA * 22 40/44 GA AA GA GA GA GA GA TA GA GA GA GA GA GA GA GA GA GC GA GC GA GA
9009 AC * 15 27/30 AC TC AC AC AC AC AC AC AC AC AC AC AC AG CC
10175 CA * 13 24/26 CA CA AA TA CA CA CA CA CA CA CA CA CA
22360 AT * 10 18/20 AT AC AT AT AT AC AT AT AT AT
24749 AC * 10 18/20 AC AG AC AC AC AC AC AC AT AC
28000 AT * 11 20/22 AT AC AT AT AT AT AT AT AT TT AT
28759 CA * 10 18/20 CA CA CA CA CA CA CA CA CA TG
66672 CA * 13 24/26 CA CA CA CA AA CA CA CA CA CA TA CA CA
67102 AC * 10 18/20 AC AG AC AC AC AC AC GC AC AC
113501 AT * 11 20/22 AT AT AT AT GT AT GT AT AT AT AT
120152 TG * 18 33/36 TG AA TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TA
127906 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CA GG
128589 CA * 10 18/20 CA GC CA CA CA CA CA CA CA CA
130713 GT * 13 25/26 GT GT GT GT GT GT GC GT GT GT GT GT GT
159917 AC * 11 20/22 AC AT AC AC AC AC GC AC AC AC AC
185989 GT * 12 22/24 GT GT GT GT GT GT GT GA GT GA GT GT
241641 AT * 10 18/20 AT GT TT AT AT AT AT AT AT AT
246274 TG * 12 22/24 TG TG TG TT TG TG TG TG TG TG AG TG
254133 AT * 11 20/22 AT AT AG AT AT AT AT CT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 263411
Total number of repeats detected.............. 21
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 0 0 0 3 6 2 2 0 0 0 0
15 to 19 0 0 0 0 1 0 1 0 0 0 0 0
20 to 24 0 0 0 1 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 0 0 1 4 6 3 2 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 0 TA = 5
0 AG + 1 GA + 0 CT + 0 TC = 1
2 GT + 3 TG + 6 CA + 4 AC = 15
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7304040|gb|AE003837.1|AE003837 Drosophila melanogaster genomic scaffold 142000013386047 section 47 of 52, complete sequence
Position Repeat Coverage Repeat
50940 AC * 10 18/20 AC AC AC AC AC AC AC AC AC GT
60799 CA * 10 18/20 CA CA CA CA CT TA CA CA CA CA
99640 TA * 10 18/20 TA TA TG TA CA TA TA TA TA TA
125985 TA * 11 20/22 TA AA TA TA TA TA TA CA TA TA TA
148626 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CA GC
162795 AG * 13 24/26 AG TG AG AG AG AG AG AG AG AG AG AG CG
164046 CA * 13 24/26 CA CA CG CA CA CA TA CA CA CA CA CA CA
167230 CA * 15 28/30 CA CC CA CC CA CA CA CA CA CA CA CA CA CA CA
167594 CA * 11 20/22 CA AA AA CA CA CA CA CA CA CA CA
167740 AC * 10 18/20 AC CC AC AC AC AC AC AC AC AG
168586 AC * 10 18/20 AC AA AC AC AC AA AC AC AC AC
170062 TG * 11 21/22 TG TG TG TG TG TG TG TT TG TG TG
190399 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA CA GG
197539 TG * 12 23/24 TG TG TG TG TG TG TG TG TG TG TC TG
206259 AG * 11 20/22 AG CG AG AT AG AG AG AG AG AG AG
216043 CT * 10 18/20 CT CT CT CT CT GT CG CT CT CT
218437 CT * 11 20/22 CT GA CT CT CT CT CT CT CT CT CT
220615 AG * 12 22/24 AG AG AA AG AG AG AG AG AG AG TG AG
225816 GT * 10 18/20 GT GT GT GT GC GA GT GT GT GT
227536 CA * 12 22/24 CA CA CA GG CA CA CA CA CA CA CA CA
228068 GT * 10 18/20 GT GT GT GC TT GT GT GT GT GT
232439 GT * 17 31/34 GT AT GT GT GT GT GT GT GT GT GT GT GT GC TT GT GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 234905
Total number of repeats detected.............. 22
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 2 3 0 3 6 2 2 0 2 0 0
15 to 19 0 0 0 0 0 1 0 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 2 3 0 3 7 2 3 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 2 TA = 2
3 AG + 0 GA + 2 CT + 0 TC = 5
3 GT + 2 TG + 7 CA + 3 AC = 15
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7304001|gb|AE003836.1|AE003836 Drosophila melanogaster genomic scaffold 142000013386047 section 46 of 52, complete sequence
Position Repeat Coverage Repeat
19460 CA * 21 38/42 CA CA TA CA CA CA CA CA CA CA CC CA CA CA CA CA CA AA CA CA TA
26342 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GA GT CT
28764 GT * 17 31/34 GT GT CT GG GT GT GT GT GT GT GT GT GT GT GT GT AT
32834 TG * 10 18/20 TG TG TC TG TA TG TG TG TG TG
66924 AT * 10 18/20 AT AT AT GT AT AC AT AT AT AT
71897 AG * 10 18/20 AG AG AG AG AG CG AC AG AG AG
72883 AC * 12 22/24 AC AC AC AT AC AC AC AC AA AC AC AC
109504 CA * 12 22/24 CA CA CA AA CA CA CA CA CA AA CA CA
118319 TG * 17 31/34 TG TA TG TG TG TG TG TG TG TG TG TG TG TG TT CG TG
125795 GT * 11 20/22 GT GT GT GC GT GT GT GG GT GT GT
127551 AG * 21 39/42 AG AG CG GG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG TG
139000 AT * 12 22/24 AT AT AT AT AT AT AT AT GT AT AT AG
140625 TG * 10 18/20 TG TT CG TG TG TG TG TG TG TG
140649 TG * 14 26/28 TG CG TG TG TG TG TG TG TG TG TG TG TA TG
143695 CA * 17 31/34 CA CA CA CA CA CA CA CA CA CA CA CA CT CA CA CT AA
146879 TC * 10 18/20 TC TC TC TC TC AC TC TC TC TT
147635 GT * 10 18/20 GT GT GT GT GT GT GT AT TT GT
172055 CT * 10 18/20 CT CT CT CT CT CT CT GT AT CT
241786 CA * 11 20/22 CA GG CA CA CA CA CA CA CA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 253189
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 0 1 0 1 2 3 3 1 1 0 0
15 to 19 0 0 0 0 0 1 1 1 0 0 0 0
20 to 24 0 0 1 0 0 1 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 0 2 0 1 4 4 4 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 0 TA = 2
2 AG + 0 GA + 1 CT + 1 TC = 4
4 GT + 4 TG + 4 CA + 1 AC = 13
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7303956|gb|AE003835.1|AE003835 Drosophila melanogaster genomic scaffold 142000013386047 section 45 of 52, complete sequence
Position Repeat Coverage Repeat
20518 AT * 10 18/20 AT AT AT AT GT AT AT AT AT GT
28682 TG * 10 18/20 TG TG TG TG TG TG TG TG TT GG
50320 TG * 11 20/22 TG TG TG CG TG TG TG TG TT TG TG
50918 TG * 10 18/20 TG TG TG TG TG TG TG CG AG TG
77754 TA * 20 37/40 TA TA TA TA TA CA TA TA TA AA TA TA TA TA TA TA TA GA TA TA
78060 GT * 11 20/22 GT GT CT GT GT GT GT GA GT GT GT
94661 AT * 10 18/20 AT AT AT AT AT GT AT AT AA AT
113665 AT * 11 20/22 AT TT AT AT AT GT AT AT AT AT AT
127822 TG * 10 18/20 TG CG TG TG TG TG TG CG TG TG
218059 CT * 10 18/20 CT TG CT CT CT CT CT CT CT CT
234090 CA * 12 22/24 CA CA CA CA CA CA CA CT CA CA CA CC
240590 AT * 21 39/42 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT GC
241043 CA * 10 18/20 CA CC CA CA CA CA CG CA CA CA
241670 GT * 10 18/20 GT GT GC GT GT GT GG GT GT GT
242328 TG * 18 33/36 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TC TG CC
249951 TG * 11 20/22 TG AG TG TG TG CG TG TG TG TG TG
253725 CA * 15 27/30 CA TA CA CA CA CG CA CA CA CA CA CA CA CA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 259860
Total number of repeats detected.............. 17
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 0 0 0 0 2 5 2 0 1 0 0
15 to 19 0 0 0 0 0 1 1 0 0 0 0 0
20 to 24 1 1 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 1 0 0 0 3 6 2 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 1 TA = 5
0 AG + 0 GA + 1 CT + 0 TC = 1
2 GT + 6 TG + 3 CA + 0 AC = 11
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7303908|gb|AE003834.1|AE003834 Drosophila melanogaster genomic scaffold 142000013386047 section 44 of 52, complete sequence
Position Repeat Coverage Repeat
13527 GT * 10 19/20 GT GT GT GT TT GT GT GT GT GT
28320 TG * 10 18/20 TG AG TG TG TG TG TG TG TG AG
50124 TA * 12 22/24 TA TA TA TA TA TA TA AA AA TA TA TA
62393 AC * 10 18/20 AC AC AC AC AC AC AC AG AC TC
65991 CA * 10 18/20 CA CA CA CA CA TA CA CA TA CA
81698 CT * 15 28/30 CT AT CT CT CT CT CT CT CT CT CA CT CT CT CT
82358 TC * 10 18/20 TC TC TC TC TC TC TC TT CC TC
90936 AT * 10 18/20 AT AT AT AT CT AT AT CT AT AT
155217 AT * 11 20/22 AT AT TT AT AT AT AT AT AC AT AT
193252 AG * 11 20/22 AG AG AA AG AG AG AG AG AG AA AG
256612 TA * 16 29/32 TA TA TA TA TA TA TA TA TA TG TA TA TA TA TG CA
257064 GA * 13 25/26 GA AA GA GA GA GA GA GA GA GA GA GA GA
-----------------------------------------------------------------------------------------
Total sequence length......................... 257324
Total number of repeats detected.............. 12
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 1 1 1 1 1 1 1 1 0 0 0
15 to 19 0 1 0 0 0 0 0 0 0 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 2 1 1 1 1 1 1 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 2 TA = 4
1 AG + 1 GA + 1 CT + 1 TC = 4
1 GT + 1 TG + 1 CA + 1 AC = 4
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7303875|gb|AE003833.1|AE003833 Drosophila melanogaster genomic scaffold 142000013386047 section 43 of 52, complete sequence
Position Repeat Coverage Repeat
8301 GT * 10 18/20 GT GT GT GC GT GC GT GT GT GT
20200 AG * 18 33/36 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG CT CG
21011 TG * 13 24/26 TG TG TC TG TG TG TG TG TG TG TT TG TG
38808 AG * 13 24/26 AG AG CG AG AG AG AG AG AG AG AG AG AC
44424 TG * 13 24/26 TG TG TG TG TG TG TT TG TG TG TA TG TG
45886 AT * 11 20/22 AT TT AT AT AT AT AT AT AT AT GT
46278 AT * 10 19/20 AT AT AT AT AT AT AA AT AT AT
46695 TA * 32 58/64 TA TT TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA GG TC TA TG TA CA
64917 GT * 10 18/20 GT GT TT GT TT GT GT GT GT GT
66129 AT * 10 19/20 AT AT TT AT AT AT AT AT AT AT
66186 GA * 12 22/24 GA CA GA GA GA CA GA GA GA GA GA GA
67107 TG * 11 20/22 TG TG TG AG TG TG TG TG TA TG TG
67303 AG * 16 29/32 AG AG AG AA TG AG AG AG AG AG AG AG AG AG CG AG
67413 CA * 10 18/20 CA CA CA GA CA CA CA AA CA CA
67556 AG * 10 18/20 AG AG AA AG AG GG AG AG AG AG
67861 GA * 16 29/32 GA GA GA AA TA GA GA GA GA GA GA GA GA GA GA GG
79176 CT * 18 33/36 CT TT CT CT CT CT CT CT CT CT CT CT CT CT CT TT TT CT
82251 AC * 16 29/32 AC AC AC AC AC AC AC AC AC AC AC AC AG GC AC AG
82573 TG * 13 24/26 TG CG TA TG TG TG TG TG TG TG TG TG TG
83176 GT * 10 18/20 GT GT GT GT AT GT GT GT GT GC
91257 CA * 11 20/22 CA CA CA CA CA GA GA CA CA CA CA
96333 AT * 15 27/30 AT AT AT AT GT AT AT AT AT AT AT AT AT AA CT
117425 CA * 16 30/32 CA CA TA CA CA CA CA CA CA CA CA CA CA CA TA CA
117901 CA * 11 20/22 CA CA CA CA CA CA CA CA CG CA CC
118924 CA * 10 18/20 CA CA CA CT CA CA CA CG CA CA
134008 TG * 10 18/20 TG TG TA TG TA TG TG TG TG TG
145007 TA * 13 24/26 TA TA TA AA TA TG TA TA TA TA TA TA TA
193006 GT * 10 18/20 GT GT GT GT GT GT GT GC GT GG
195524 AC * 13 25/26 AC TC AC AC AC AC AC AC AC AC AC AC AC
195720 GT * 11 20/22 GT GG GT GC GT GT GT GT GT GT GT
196048 TG * 10 18/20 TG TT AG TG TG TG TG TG TG TG
197454 TG * 11 20/22 TG TG TG TG TT TG TG TG TG TA TG
201922 CT * 20 36/40 CT CT CG CT CT CT CT CT CT CT CT CT CT CT CT CT CT GT CG CG
212203 TG * 10 18/20 TG CG TG CG TG TG TG TG TG TG
218591 AT * 10 18/20 AT AT AT AT AT AA AT AC AT AT
237265 AC * 15 28/30 AC AC AC AC AC AC AC AC AC AC AC AC AG AA AC
240614 GT * 10 19/20 GT GT GT TT GT GT GT GT GT GT
253341 TG * 15 27/30 TG TG TG TG TG TG TG CG TG TG TG TG TG AG TT
262513 GT * 12 22/24 GT GT GT GT TT GT GT GT GT GG GT GT
264788 GT * 10 18/20 GT GT GC CT GT GT GT GT GT GT
264810 GT * 10 18/20 GT GT GT GT GT GT CT GT GT GC
-----------------------------------------------------------------------------------------
Total sequence length......................... 265562
Total number of repeats detected.............. 41
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 1 2 1 1 4 8 9 0 0 0 0
15 to 19 1 0 2 1 2 1 1 0 0 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 1 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 1 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 2 4 2 3 5 9 9 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 2 TA = 7
4 AG + 2 GA + 2 CT + 0 TC = 8
9 GT + 9 TG + 5 CA + 3 AC = 26
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7303842|gb|AE003832.1|AE003832 Drosophila melanogaster genomic scaffold 142000013386047 section 42 of 52, complete sequence
Position Repeat Coverage Repeat
92499 TG * 16 29/32 TG TG TG TG TT GG TG TG TG TG TG TG TG TG TC TG
94387 AT * 12 22/24 AT AT AT AT AT AT AT AT AT TT CT AT
107785 TG * 13 24/26 TG TG TG GG TG TG TG TG TG TG AG TG TG
108901 AT * 15 27/30 AT AT GT AT AT AT AT AT AT AG AT AT AT AT CT
111751 TG * 14 26/28 TG TG TG TG TG TG TG TG TG TG TG TG TG GA
121452 TA * 14 26/28 TA TA TA TA TA TA TA TA TA CA TA TA TA TT
186237 CA * 12 22/24 CA CA CA GA CA CA CA CA CA CA CA GA
221865 AC * 12 22/24 AC AC CC AC AC TC AC AC AC AC AC AC
222304 CA * 12 22/24 CA CA CA CA CA CA CA AA CA CA CC CA
222885 TA * 13 24/26 TA TA TA TA TA TA TA TA TA TA TA TA GC
228581 CA * 13 25/26 CA CG CA CA CA CA CA CA CA CA CA CA CA
229860 AT * 10 19/20 AT AA AT AT AT AT AT AT AT AT
237397 TA * 12 22/24 TA TT TA TA TA TA TA TA TA TA TA TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 261713
Total number of repeats detected.............. 13
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 3 0 0 1 3 2 0 0 0 0 0
15 to 19 1 0 0 0 0 0 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 3 0 0 1 3 3 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 3 TA = 6
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 3 TG + 3 CA + 1 AC = 7
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7303794|gb|AE003831.1|AE003831 Drosophila melanogaster genomic scaffold 142000013386047 section 41 of 52, complete sequence
Position Repeat Coverage Repeat
3632 TA * 15 28/30 TA TA CA TA TA TA TA TA TA TA TA TA TA TT TA
7299 AT * 12 22/24 AT AT AT AT AT AT AT AT AT CT AT CT
13507 TC * 10 19/20 TC TC TC TC TC TC TC TC TC TG
18786 TG * 10 18/20 TG TG TT TG TG TG TG TG TG TT
20552 TA * 12 22/24 TA TA TA TA TA TA TA TA CA TC TA TA
88353 AT * 12 22/24 AT AT AT AT AT AT AT AT GT AT GT AT
91783 TA * 12 22/24 TA TA TA TA TA TA TA TG TA TA TA TT
105315 GT * 16 29/32 GT GT GT GT GT GT GT GT GT GT GT GT GT GT TT TG
106124 CA * 23 42/46 CA CA CA CC CA CC CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA GG
106544 AT * 10 18/20 AT AT AT AT AC AT AT AT AT CT
113022 AC * 11 20/22 AC AC AC GC GC AC AC AC AC AC AC
114231 AC * 10 18/20 AC AC AC AC GC AC AC AC AC AA
127369 CT * 15 27/30 CT CT CT CT CT CT CT CT CT GT CT CT TT CT CG
153126 AG * 12 22/24 AG AG AG AG AG AG AG AG AG AG AG GA
163875 TG * 18 33/36 TG TG TG TG TG TG TG TG TG TG TG TG CG TA TC TG TG TG
170926 CA * 10 18/20 CA CA CA CA CA CA CA CA CC AA
174618 TG * 13 24/26 TG TG TT TG TG TG TG TC TG TG TG TG TG
174806 TG * 16 29/32 TG TG TG TG AG TG TG TG TG TG TG TG TG CG TG CG
178735 GT * 11 20/22 GT GA GT GT GC GT GT GT GT GT GT
189684 AT * 11 20/22 AT AT AT AT AT AT AT AT AT GT TT
191412 CA * 17 31/34 CA GA CA CA CA CA CA CA CA CA CA CA TA CA TA CA CA
194042 TA * 10 18/20 TA TA TA TA TA TA AA TG TA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 260916
Total number of repeats detected.............. 22
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 3 1 0 2 1 2 1 1 0 0 0
15 to 19 0 1 0 0 0 1 2 1 0 1 0 0
20 to 24 0 0 0 0 0 1 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 4 1 0 2 3 4 2 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 4 TA = 8
1 AG + 0 GA + 1 CT + 1 TC = 3
2 GT + 4 TG + 3 CA + 2 AC = 11
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7303755|gb|AE003830.1|AE003830 Drosophila melanogaster genomic scaffold 142000013386047 section 40 of 52, complete sequence
Position Repeat Coverage Repeat
4739 TG * 10 18/20 TG TG TG TG TG TG TG TG TT GG
21847 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TA TC
30859 CA * 10 18/20 CA CA GA CA CA CA AA CA CA CA
35934 TG * 17 31/34 TG TG TG AG TG TG TG TG TG TG TG TG TG TG TT TG AG
42628 CT * 10 18/20 CT CT CG TT CT CT CT CT CT CT
45791 AT * 11 20/22 AT CT AT AT AT AT AT AT AT AT AA
65575 TA * 10 18/20 TA TA TA AA TA TT TA TA TA TA
94429 AC * 10 18/20 AC AC AC GC AC AC AC GC AC AC
114788 AT * 13 25/26 AT AT AA AT AT AT AT AT AT AT AT AT AT
115413 AT * 10 18/20 AT AT AT AT AT GT AT AT GT AT
131521 AG * 10 18/20 AG AG AG TG GG AG AG AG AG AG
136093 AC * 10 18/20 AC AC AC GC AC AC AC AC AC TC
142996 GT * 10 18/20 GT GC GT GT GC GT GT GT GT GT
144722 CA * 10 19/20 CA CA CA CA CA CA CA CA CA CG
145626 CT * 13 24/26 CT CT CT CT CT TT CT CT CT CT CT CT GT
145930 TG * 10 18/20 TG TG TG TT TG TG TG GG TG TG
153537 GT * 10 18/20 GT GT GT GT GC GT GT GT GT AT
153703 CA * 11 20/22 CA AG CA CA CA CA CA CA CA CA CA
155421 AT * 11 20/22 AT AA AT AT AT AT AT AT AT TT AT
159430 TG * 10 18/20 TG TG TG TG TG TG TG TG TG CT
163112 TA * 10 18/20 TA TC TA TA TA CA TA TA TA TA
163293 AC * 12 22/24 AC AC AC AA AC AC AC AC AC AC AC AT
163920 TA * 16 29/32 TA TA TA TA TC TA TA TA TA TA TA TA TA TA CA TG
164323 AC * 10 18/20 AC AC AT AC AC AC AC AT AC AC
166451 AT * 12 22/24 AT AT AT AT AT AT AT AT AT AT GA AT
183916 CA * 15 27/30 CA CA CA CA CA CA CA CA CA CA TA GA CA CA CT
184046 CA * 11 20/22 CA CT CA CA CA CA CA CA CA CA TA
186013 AT * 10 18/20 AT AT AT AT AT AA AT AC AT AT
197059 GT * 11 20/22 GT GT CT GT GT GG GT GT GT GT GT
202009 CA * 21 39/42 CA TA CA CA AA CA CA CA CA CA CA CA CA CA CA CA CA CT CA CA CA
202832 AT * 16 29/32 AT AT GC AT AT AT AT AT AT AT AT AT AT AT AT AC
221139 AT * 13 24/26 AT AT AT AT AT AT AT AT AT AT CT AT AC
-----------------------------------------------------------------------------------------
Total sequence length......................... 261895
Total number of repeats detected.............. 32
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 7 2 1 0 4 4 4 3 0 2 0 0
15 to 19 1 1 0 0 0 1 1 0 0 0 0 0
20 to 24 0 0 0 0 0 1 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 8 3 1 0 4 6 5 3 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
8 AT + 3 TA = 11
1 AG + 0 GA + 2 CT + 0 TC = 3
3 GT + 5 TG + 6 CA + 4 AC = 18
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7303717|gb|AE003829.1|AE003829 Drosophila melanogaster genomic scaffold 142000013386047 section 39 of 52, complete sequence
Position Repeat Coverage Repeat
10687 AG * 14 26/28 AG AG AG TG AG AG AG AG AG AG GG AG AG AG
20814 AC * 13 24/26 AC AC AA AC AC AC AC AC AC AC AC AC AG
25520 GT * 11 20/22 GT AT GT GT GT GT GT GT GT GT GG
32687 TG * 10 18/20 TG TG TG TG TG TG TG TG TG CA
32873 CT * 12 22/24 CT CT TT CT CA CT CT CT CT CT CT CT
43640 AT * 11 20/22 AT AT AT AT AC AT AT GT AT AT AT
44728 CA * 13 24/26 CA CA AA CA CA CA CA CA CA TA CA CA CA
45923 TG * 12 22/24 TG CA TG TG TG TG TG TG TG TG TG TG
47494 CA * 10 18/20 CA CA CA CA TA CA CA CT CA CA
48113 CA * 10 18/20 CA CA CA CA CA CA CA CA AA CT
53870 GT * 15 27/30 GT GT GT GT GT GT GT GT GT TT GT GT TT GT GG
58889 GT * 10 18/20 GT GT GT GT GT GA GT GT GC GT
60332 CA * 11 20/22 CA CT CA CA CA CA CA CA AA CA CA
62266 TG * 10 19/20 TG TG TG TG TG TG TG TG TG AG
62542 GA * 10 18/20 GA GA GC GA GA GA GA GA GA TA
64219 AC * 10 18/20 AC AC AC GC AC AT AC AC AC AC
70463 AG * 10 18/20 AG TG AG AG AG AG AG TG AG AG
71025 CA * 10 18/20 CA CA CG TA CA CA CA CA CA CA
73835 GA * 10 19/20 GA GA GA GA GA GA GA GA GC GA
75088 CT * 12 22/24 CT CT CT CT CT CT CT CT GT CT CT AT
77181 CT * 18 33/36 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CG CA CT CG
79568 CA * 11 20/22 CA AA CA TA CA CA CA CA CA CA CA
80667 TG * 12 22/24 TG TA TG TG TG TG TG TG TG TG TA TG
83828 AC * 11 20/22 AC AC AC AC AC AC GC AC AC AC AA
84166 CA * 11 20/22 CA CA CG CA CA CA CA CA CA AA CA
90543 GT * 10 18/20 GT GT GT GT GT GT GT GT TT CT
90895 GT * 10 18/20 GT GT GT GT AT GT GT GT GT GC
110745 AT * 11 21/22 AT AT TT AT AT AT AT AT AT AT AT
113496 TC * 15 27/30 TC TC TG CC TC TC TC TC TC TC TC TC TC TC TA
113810 AC * 16 29/32 AC AC AC AC AC AC AC AC AC AA AC AA AC AC AC GC
115205 GT * 12 22/24 GT GC CT GT GT GT GT GT GT GT GT GT
115672 AT * 12 22/24 AT AC AT AT AT AT AT AT AT AT AT AC
116872 AT * 10 18/20 AT AT AT AT AT AT AT AT AC AC
122602 GA * 10 18/20 GA AA GA GA GA GA GA GA GA GT
124719 AT * 16 29/32 AT AT AA AT AT AT AT AA AT AT AT AT AT AT AT AN
130827 CA * 12 22/24 CA CA CA CA CA CA CA CA CA GA TA CA
132299 TA * 11 20/22 TA CA CA TA TA TA TA TA TA TA TA
147574 GT * 10 19/20 GT GT GT GT GT GT GT GT GT GC
166757 AT * 18 33/36 AT AT TT AT AT AT AT GT AT AT AT AT AT AT AT AT GT AT
168599 CA * 18 34/36 CA CA CA CA CA CA CA CT CA CA CA CT CA CA CA CA CA CA
171629 TA * 13 24/26 TA TA TA TA TA TT TA TA TA AA TA TA TA
176241 AT * 12 22/24 AT GT AT AT AC AT AT AT AT AT AT AT
215807 AT * 10 19/20 AT CT AT AT AT AT AT AT AT AT
226265 TG * 12 22/24 TG TG TC TG TG TG TG TG TG TG AG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 258492
Total number of repeats detected.............. 44
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 6 2 2 3 3 8 5 6 0 2 0 0
15 to 19 2 0 0 0 1 1 0 1 1 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 8 2 2 3 4 9 5 7 1 3 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
8 AT + 2 TA = 10
2 AG + 3 GA + 3 CT + 1 TC = 9
7 GT + 5 TG + 9 CA + 4 AC = 25
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7303677|gb|AE003828.1|AE003828 Drosophila melanogaster genomic scaffold 142000013386047 section 38 of 52, complete sequence
Position Repeat Coverage Repeat
6985 TA * 10 18/20 TA AA TA CA TA TA TA TA TA TA
41676 AT * 10 18/20 AT AT AT AT AC AT AT AT AT TT
73610 AT * 12 22/24 AT AT AT AT AT AC AT AT AT AT AT GT
129079 CA * 15 27/30 CA CA CA CA CA AG CA CA CA CA CA CA CA CA CC
129475 TG * 15 27/30 TG TG TG TG CG TG GG TG TG TG TG TG TG TG TT
136082 GT * 11 20/22 GT GC GT GT GT GT GT GT GT GG GT
136255 TG * 17 31/34 TG TG TG GC TG TG TG TG TG TG TG TG TG TG TG TG CG
140760 CA * 12 22/24 CA TA CA CA AA CA CA CA CA CA CA CA
146961 CA * 13 24/26 CA CC CA CT CA CA CA CA CA CA CA CA CA
152413 TG * 11 20/22 TG TA TG AG TG TG TG TG TG TG TG
156941 TG * 12 22/24 TG TT TG TG TG TG TG TG TG TG TG TT
178238 CA * 11 20/22 CA CC CT CA CA CA CA CA CA CA CA
183267 AG * 12 22/24 AG AA AG AG AG AG AG AG AG AG AG CG
194885 GT * 15 27/30 GT GA AT GT GT GT GT GT GT GT GT GT GT GT GA
194918 GT * 10 18/20 GT GT GT GT GT GT GG GT GT GG
198420 AC * 11 20/22 AC GC AC AC AC AC AC AC AC AC AG
216307 TG * 10 18/20 TG TG TG TG TA TG TA TG TG TG
216498 TG * 18 33/36 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG GT TG TA
218264 AC * 16 30/32 AC AC AC AC GC AC AC AC AC AC AC AC AC AC AC AG
226161 GA * 10 18/20 GA GA AA GA GA GA CA GA GA GA
243111 AC * 12 22/24 AC AC AC TT AC AC AC AC AC AC AC AC
259694 TA * 10 18/20 TA TA TA TA TA TA TA TT TA TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 259920
Total number of repeats detected.............. 22
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 2 1 1 2 3 3 2 0 0 0 0
15 to 19 0 0 0 0 1 1 3 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 2 1 1 3 4 6 3 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 2 TA = 4
1 AG + 1 GA + 0 CT + 0 TC = 2
3 GT + 6 TG + 4 CA + 3 AC = 16
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7303662|gb|AE003827.1|AE003827 Drosophila melanogaster genomic scaffold 142000013386047 section 37 of 52, complete sequence
Position Repeat Coverage Repeat
1817 TC * 12 22/24 TC CC TC TC TC TC TC TC TC TC TC TT
2688 GT * 11 21/22 GT GT GT GT GT GT TT GT GT GT GT
2716 GT * 11 20/22 GT GT AT GG GT GT GT GT GT GT GT
3637 TG * 10 19/20 TG TG TG TG TG TG TG TG TG TC
6164 TG * 17 31/34 TG TG TG CG TG TG TG TG TG TG TG TG TG TG GG TG TA
8654 AG * 13 24/26 AG AG AG AG AG AG AG AG AG AG AG AT TG
12451 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA CT AA
27628 AT * 11 20/22 AT AC AT AT AT AT AT AT AT AT GT
32000 TC * 12 22/24 TC TC TC TC TC TC TC TC TC TC TT TT
48369 CA * 13 24/26 CA CA CA CA CA CA CA CA CA TA CA TA CA
60873 AC * 16 29/32 AC GC AC AC AC AC AC AC AC AC AC AC AC GC AT AC
76526 AC * 10 19/20 AC AC AC AC AC AC AC AT AC AC
76762 TG * 10 18/20 TG TA TA TG TG TG TG TG TG TG
78707 TG * 10 18/20 TG TG TG TG TG TG TG TG CG CG
84185 GT * 11 20/22 GT GT GA GT GT GT GT GT GT GT GA
84552 CA * 15 28/30 CA CA CA CA CA CA CA CA CA CA CA CA CA CA AC
88437 TG * 10 18/20 TG TC AG TG TG TG TG TG TG TG
89017 TG * 11 20/22 TG TG TG TG TG TG TT AG TG TG TG
92805 TG * 13 25/26 TG TG TC TG TG TG TG TG TG TG TG TG TG
96207 CA * 12 22/24 CA CA CA CA CA CA CA CA CA TT CA CA
97021 GT * 11 20/22 GT GT GT GT GT GT GT GT GT GC GG
102422 TG * 12 22/24 TG TG TG CG TC TG TG TG TG TG TG TG
104202 AG * 21 38/42 AG AT AG AT AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG TT
105214 CA * 17 31/34 CA CA CA CA CA CA CA CA CA CA CA CA CA CG CA CG TA
118475 GT * 10 18/20 GT GT GT GT GT GT GT GT GG GC
118857 TG * 10 18/20 TG TG TG TG CG AG TG TG TG TG
121313 GT * 10 18/20 GT GT GT GT GT GT GT GT GT CA
122316 GT * 11 20/22 GT GA GA GT GT GT GT GT GT GT GT
122389 GT * 12 22/24 GT GT GT GT GT GT GT GG GT GT GT GG
123964 GT * 15 27/30 GT GC GT GT GT GT GT GT GT GT GT GT GT GG GA
129439 TA * 21 38/42 TA TA TA TA TG TA CA TA TA TA TA TA TA TA TA TA TA TG TA TG TA
133020 GT * 11 21/22 GT GT GT GT GT GT GT GT GT GT GG
133452 CA * 11 21/22 CA CA CG CA CA CA CA CA CA CA CA
135208 GT * 14 26/28 GT GT GT GT GA GT GT GT GT GT GT GT GT GC
136818 CA * 13 25/26 CA CA CA CA CA CA CA CA CA CA CA CA GA
137030 TG * 17 31/34 TG TG TG TA AG TG TG TG TG TG TG TG TG TG TG TG TT
146785 GT * 11 20/22 GT GT GT GT AT GT GT GT AT GT GT
149978 GT * 17 31/34 GT GT GT AT GT GT GT GT GT GT GT GT GT GT GT GC GA
150767 TG * 11 20/22 TG TG TG CG TG TG TG TG TG TG TT
157139 CA * 18 34/36 CA CT CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CG
157420 TG * 15 27/30 TG TA TG TG TG TG TG TG TG TG TG TG TG TG AA
159071 CA * 10 19/20 CA CA CA CA CA CA CA CA CA CT
161586 TC * 17 31/34 TC GC AC TC TC TC TC TC TC TC TC TC TC TC TC TT TC
165300 TG * 14 26/28 TG TG TG TG TG TG TG TG CG TG TG TA TG TG
165646 TG * 11 20/22 TG CG TG TG TG TG TG TG TG TG GG
166806 TG * 18 34/36 TG TG TG TC TG TG TG TG TG TG TG TG TG TG TG TG CG TG
168405 CA * 12 23/24 CA CG CA CA CA CA CA CA CA CA CA CA
168912 CA * 10 18/20 CA CA CT CA CA CA CA CA CA CT
174080 CA * 15 27/30 CA CA CA CA CA CA CA CA CA CG TA CA CA CA CT
178425 GT * 17 31/34 GT CT AT GT GT GT GT GT GT GT GT GT GT GT GT GT AT
181541 AT * 16 29/32 AT AT AT AT AT AT AT AA AT AT AT AT AT AT AA AA
182152 AT * 14 26/28 AT AT AT AT AT AT AT AT AT AT AT GT AT TT
182316 AT * 12 22/24 AT AT AT AT AC AT AT AT AT GT AT AT
183012 CA * 10 18/20 CA TA TA CA CA CA CA CA CA CA
189362 CA * 10 18/20 CA CA CA CA CA CA CA CA CG CG
194906 AT * 11 20/22 AT AT AT AC AT AC AT AT AT AT AT
194929 AT * 10 18/20 AT AT AT AT AT AT AT GT AT AG
199532 AT * 12 22/24 AT AT AT AT TT AT AT AT AT AT AC AT
199718 AC * 10 18/20 AC AC AC AC AC AC AC AC AG CC
199749 GA * 12 22/24 GA GA AA GA GA GA GA GG GA GA GA GA
201031 GT * 16 29/32 GT GT GT GT GT GT GT GC GA GT GT GT GT GT GT GG
207567 CA * 10 18/20 CA CA CG CA CA CA CA CA CA TA
215032 CA * 11 20/22 CA CA CA CA CA CG CA CA CA CG CA
220219 AC * 11 20/22 AC TC AC AC AC AC AC AC AC AG AC
224521 AC * 13 24/26 AC AT AC AC AA AC AC AC AC AC AC AC AC
227799 TG * 10 18/20 TG TG CG TG TG TA TG TG TG TG
235937 TG * 13 24/26 TG TG TG TA TG TG TG GG TG TG TG TG TG
243312 TG * 10 18/20 TG TC TG TG TG TG TG CG TG TG
243546 CA * 10 18/20 CA CA CA CA CA CA CA CT GA CA
253689 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GG GT GT GG
256849 TA * 16 29/32 TA TT TA TA TA AA TA TA TA TA TA TA TA TA TA TT
260309 AT * 12 22/24 AT AT AT AC AT AC AT AT AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 261694
Total number of repeats detected.............. 72
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 7 0 1 1 4 13 14 12 2 0 0 0
15 to 19 1 1 0 0 1 4 4 4 1 0 0 0
20 to 24 0 1 1 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 8 2 2 1 5 17 18 16 3 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
8 AT + 2 TA = 10
2 AG + 1 GA + 0 CT + 3 TC = 6
16 GT + 18 TG + 17 CA + 5 AC = 56
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7303588|gb|AE003826.1|AE003826 Drosophila melanogaster genomic scaffold 142000013386047 section 36 of 52, complete sequence
Position Repeat Coverage Repeat
28088 TG * 14 26/28 TG GG TG TG TG TG TG TG TG TG TG TG TG TA
42098 TA * 16 29/32 TA TA CA TA TA TA TA TA TA TA TA TA TA TG TG TA
102354 GA * 12 22/24 GA GA GA GA GA GG GA GA GA GA GC GA
103845 AC * 10 18/20 AC AC AC AA AC AC AC AC AC AT
182470 TA * 10 19/20 TA TA TA TA TA TA TA TA CA TA
215981 GA * 12 23/24 GA GA GA GA GA GA GA GA GA GA GA GC
224452 TA * 10 18/20 TA TA TA TA CA TG TA TA TA TA
235944 TC * 11 20/22 TC AG TC TC TC TC TC TC TC TC TC
250734 AT * 10 18/20 AT AT AT AG AT AT AT AT CT AT
264008 CA * 12 22/24 CA CA CT CA CA CA CA AA CA CA CA CA
264324 CA * 11 20/22 CA TA CA CA CA CA CT CA CA CA CA
272534 AC * 12 22/24 AC CC AC AC AC AC AC AA AC AC AC AC
279474 TG * 11 20/22 TG TG CA TG TG TG TG TG TG TG TG
283224 TG * 20 36/40 TG TC TC TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG CT
283270 TG * 11 20/22 TG TG TG TG TG TG TG TG TT TG GG
283685 AG * 12 22/24 AG GG AG GG AG AG AG AG AG AG AG AG
287127 GT * 12 22/24 GT GT GT GT GT GT GT GT GT TT GT AT
287691 TA * 10 18/20 TA GA TA TA TG TA TA TA TA TA
290035 CA * 15 28/30 CA CA CT CA CA CA CA CA CA CA CA CA CG CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 291089
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 3 1 2 2 2 3 1 1 0 0 0
15 to 19 0 1 0 0 0 1 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 1 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 4 1 2 2 3 4 1 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 4 TA = 5
1 AG + 2 GA + 0 CT + 1 TC = 4
1 GT + 4 TG + 3 CA + 2 AC = 10
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7303570|gb|AE003825.1|AE003825 Drosophila melanogaster genomic scaffold 142000013386047 section 35 of 52, complete sequence
Position Repeat Coverage Repeat
6301 AC * 11 20/22 AC AC AC AC AC AC AC AC TC AG AC
12084 TA * 11 20/22 TA TG TA TA TA TA TA CA TA TA TA
28836 AT * 11 20/22 AT AC AT AT AC AT AT AT AT AT AT
64498 GT * 13 24/26 GT AT GT GT GT GT GT GT GT GT GT GT GG
67118 AC * 10 18/20 AC AC AC TC AC AC AC GC AC AC
81941 TG * 10 18/20 TG TG TG TG CA TG TG TG TG TG
84488 AG * 23 42/46 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG GG GG AC AT
89575 GA * 13 24/26 GA GA GA GT GA GA GA CA GA GA GA GA GA
101322 AG * 10 18/20 AG AG AA AG AG AG AG AG AG TG
107141 GT * 10 18/20 GT GT GT TT GT GT GT GT GT GA
107814 TG * 10 18/20 TG TG TT TG TG TG TG TG TG AG
109832 AG * 10 18/20 AG AG AG GG AG CG AG AG AG AG
110083 TC * 11 20/22 TC TA TC CC TC TC TC TC TC TC TC
112099 GT * 12 22/24 GT GT GT GT GT TT GT GT CT GT GT GT
113852 AG * 11 20/22 AG AG CG AG AG AG AG AG CG AG AG
114258 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TC CG TG
116268 AC * 12 22/24 AC AC AC AA AC AC AC AG AC AC AC AC
117241 AC * 11 20/22 AC CC TC AC AC AC AC AC AC AC AC
118518 CA * 10 18/20 CA AA CA CG CA CA CA CA CA CA
120730 AC * 10 18/20 AC AC AC AC AC AC AC GC AC AG
120929 CT * 13 25/26 CT CT CT CA CT CT CT CT CT CT CT CT CT
126833 TG * 10 19/20 TG TG TG TG CG TG TG TG TG TG
127253 AT * 10 19/20 AT AT AT AT AT AT AT AT AT TT
133369 CA * 10 18/20 CA CA CA AA CA CG CA CA CA CA
142933 TG * 10 18/20 TG TG TG TG TG TG TG TG AG CG
154245 CT * 10 18/20 CT CT CT GT CT CT CT TT CT CT
165153 CA * 10 18/20 CA TA CT CA CA CA CA CA CA CA
167939 AT * 11 20/22 AT TA AT AT AT AT AT AT AT AT AT
169740 AT * 10 18/20 AT AG AA AT AT AT AT AT AT AT
184395 GT * 11 20/22 GT GT GT GA GT GT GC GT GT GT GT
198566 TG * 13 24/26 TG TT TG TG TG TG TG TG TG TG TG TC TG
200447 GT * 11 20/22 GT GT GT GT AT GT GT GT GT GT GC
219254 AG * 10 18/20 AG AG AG AG TG AG AG CG AG AG
223006 TA * 10 18/20 TA AA AA TA TA TA TA TA TA TA
237144 CA * 12 22/24 CA CA CC CA CA CA CA GA CA CA CA CA
253918 GT * 12 22/24 GT TT GT GT GT GT GT GT GT GT GT GG
257689 AC * 15 27/30 AC AA AC AC AC AC AC AC AC TC AC AC AC AC AA
-----------------------------------------------------------------------------------------
Total sequence length......................... 278196
Total number of repeats detected.............. 37
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 2 4 1 5 4 6 6 1 2 0 0
15 to 19 0 0 0 0 1 0 0 0 0 0 0 0
20 to 24 0 0 1 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 2 5 1 6 4 6 6 1 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 2 TA = 6
5 AG + 1 GA + 2 CT + 1 TC = 9
6 GT + 6 TG + 4 CA + 6 AC = 22
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7303542|gb|AE003824.1|AE003824 Drosophila melanogaster genomic scaffold 142000013386047 section 34 of 52, complete sequence
Position Repeat Coverage Repeat
3737 AC * 10 18/20 AC AC AC TC AC CC AC AC AC AC
53072 AT * 10 18/20 AT AC AT AT AT AT AT AT AT AA
55052 AT * 10 18/20 AT TT AT AT AT AT AT AT AT AC
86801 TA * 10 18/20 TA TA TA TA CT TA TA TA TA TA
92213 AT * 10 18/20 AT AT CT AT AT CT AT AT AT AT
158037 AC * 11 20/22 AC TC AC AC AC AC GC AC AC AC AC
165443 GT * 14 26/28 GT GT GT GT GT GT GT GT GT GT GT GT GA GG
183047 TA * 20 36/40 TA TA TA TG TA TA TA TA TA TA TA TA TA TA TT TA TA TA TA CT
184161 TA * 10 18/20 TA TA TA TG TT TA TA TA TA TA
201392 AT * 13 25/26 AT AT AC AT AT AT AT AT AT AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 249001
Total number of repeats detected.............. 10
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 2 0 0 2 0 0 1 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 1 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 3 0 0 2 0 0 1 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 3 TA = 7
0 AG + 0 GA + 0 CT + 0 TC = 0
1 GT + 0 TG + 0 CA + 2 AC = 3
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7303489|gb|AE003823.1|AE003823 Drosophila melanogaster genomic scaffold 142000013386047 section 33 of 52, complete sequence
Position Repeat Coverage Repeat
2919 TG * 17 31/34 TG TA TG TG TG TG TG TG TG TG TG TG TG TG CG TG TT
34518 AC * 13 24/26 AC AC AA AC AC AT AC AC AC AC AC AC AC
37811 TG * 12 22/24 TG TG TG CG TG TG TG TG TG TG TG GG
45697 GT * 10 18/20 GT GT GT GT GT GT GA GA GT GT
46408 CT * 11 20/22 CT CT CT CT CT CT CT CT TT CT GT
49661 TA * 19 35/38 TA TA AC TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT
89860 TG * 10 18/20 TG TG TA TG TG TG TG TG TG GG
108046 GT * 10 18/20 GT GA CT GT GT GT GT GT GT GT
128739 TG * 10 18/20 TG TG TG TG CT TG TG TG TG TG
129980 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT GT CG
132128 CA * 10 18/20 CA AA AA CA CA CA CA CA CA CA
143030 AC * 11 20/22 AC TT AC AC AC AC AC AC AC AC AC
145272 TG * 11 20/22 TG TG TG TG TG TG TG TG CG TG CG
147430 GT * 14 26/28 GT GT GT GT GT GT GT GT GT GT GT TT GT GC
147736 GA * 10 18/20 GA GA GC GA GA GA GA GC GA GA
156573 CT * 12 22/24 CT CT CT CT CT CT CT CT CG CT CT TT
157282 GT * 10 18/20 GT GT GT GT GT GT GT GG TT GT
157815 GA * 25 45/50 GA CA GA GA GA GA GA GA GA GA GA GA AA GA GA GA GA GA GA GT GA GT GA GA GG
158420 TG * 12 22/24 TG TG TT TG TG TG TG TG TG TG TG CG
158663 CA * 11 20/22 CA CA CA CA AA CA CA CA CA CA AA
159325 AG * 17 31/34 AG AG AG AG AG AG AG AG AG AG AG AG AG AG CA CG AG
159453 AC * 17 31/34 AC AC AC AC AC AC AC AC AC AC AC AG AC AC AC AA AG
159724 CT * 13 24/26 CT CC CG CT CT CT CT CT CT CT CT CT CT
159961 TG * 12 22/24 TG GG TG TG TG TG TG TG TG CG TG TG
161377 CA * 13 25/26 CA CA CA CA CA CA CA CA CA CA CA CA AA
162426 CA * 10 18/20 CA CA CA CA CA CA CA CA TA TA
162648 TG * 11 20/22 TG TG TG TG TG TG TG TG TG GG AG
164825 CA * 10 19/20 CA CA CA CA CA CA CA CA CA CC
165522 CA * 10 18/20 CA CA CA CA CA CA CA TA CG CA
165894 CA * 10 19/20 CA CA CA CA CA CA CA AA CA CA
166504 CA * 14 26/28 CA CA CA CA CA CA TA CA CA CA CA CA CA CC
169113 CA * 16 29/32 CA CA CA CA CA CA CA CA CA CA CA CA CA GA AA AA
169732 AC * 10 18/20 AC AC AC AC AC AT AC AC AT AC
170074 TC * 10 18/20 TC TC TG TC TC TC TG TC TC TC
171840 CA * 13 24/26 CA CG CA CA CA CA TA CA CA CA CA CA CA
172755 CA * 11 20/22 CA CA CA CT CA CA CA CA CA CA CC
173636 AT * 11 20/22 AT AT AT AT AT AT AT AT GT AT CT
174921 AC * 13 24/26 AC AC AC AC AC AC AC AC TC AA AC AC AC
177025 AT * 11 20/22 AT AT AT AT AT AC AC AT AT AT AT
187509 AC * 14 26/28 AC AC AC AC AC GC AC AC TC AC AC AC AC AC
189671 TG * 12 22/24 TG TG TG CG TG TG TG TG TG TG TG CG
204194 AG * 14 26/28 AG AG AG AG AG AG AG AG AG AG AG CG AG CG
206700 AC * 12 22/24 AC AC AC AC AC AC AC AC GC AC AC TC
230686 CA * 10 18/20 CA CA CA AG CA CA CA CA CA CA
241462 TG * 13 24/26 TG TC AG TG TG TG TG TG TG TG TG TG TG
242486 CA * 10 18/20 CA CA CA GA CA CA CG CA CA CA
261584 AG * 10 19/20 AG AG AG AG AG AG AG AG AG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 262740
Total number of repeats detected.............. 47
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 0 2 1 6 12 9 5 1 3 0 0
15 to 19 0 1 1 0 1 1 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 1 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 1 3 2 7 13 10 5 1 3 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 1 TA = 3
3 AG + 2 GA + 3 CT + 1 TC = 9
5 GT + 10 TG + 13 CA + 7 AC = 35
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7303437|gb|AE003822.1|AE003822 Drosophila melanogaster genomic scaffold 142000013386047 section 32 of 52, complete sequence
Position Repeat Coverage Repeat
13155 AT * 13 24/26 AT AT GT AT AT AT AG AT AT AT AT AT AT
16957 AT * 31 56/62 AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AA GT AA TT
19423 TA * 10 18/20 TA TA TA TC TG TA TA TA TA TA
27622 CA * 15 27/30 CA CA AA CA CA CA CA CA CA CA CA CA CA CA TT
112501 CT * 11 20/22 CT CT CT CT CT CT CT CT CT CT TG
116587 TG * 13 24/26 TG CT TG TG TG TG TG TG TG TG TG TG TG
116931 GT * 10 18/20 GT GT GT GT GT GT GT GT TT GC
120752 GT * 11 20/22 GT TT GA GT GT GT GT GT GT GT GT
122276 CA * 12 22/24 CA CA CA CA CA CA CT CA CT CA CA CA
189197 TA * 10 18/20 TA TA TA TA TA GA TA TG TA TA
236615 TA * 12 22/24 TA TA TA TA TA TA TG TA TA TA TA TT
238050 TG * 12 22/24 TG TG TG TG TG TG TG TA TG TG TG GG
248391 AT * 10 18/20 AT AT AT AT TT AT AT AT AT TT
249771 TA * 13 24/26 TA TT TA TA AA TA TA TA TA TA TA TA TA
250092 TA * 11 20/22 TA TT TA TA TG TA TA TA TA TA TA
250271 TA * 10 18/20 TA AA TA TA TA TA TA TA TA TN
251957 CA * 12 22/24 CA CA CT CA CA CA CA CG CA CA CA CA
253691 CT * 11 20/22 CT CT CG CT CT CT CT CT CT CT CA
255065 AT * 10 18/20 AT AA AT AG AT AT AT AT AT AT
255514 AG * 11 20/22 AG AA AG AG AG AG AG AG AG AG TG
256607 GT * 11 21/22 GT GT GT GT GT GT GT GT GT GT GG
261011 TA * 10 18/20 TA CA TA TA TA TA TA TA TA TC
-----------------------------------------------------------------------------------------
Total sequence length......................... 266350
Total number of repeats detected.............. 22
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 7 1 0 0 2 2 3 0 2 0 0
15 to 19 0 0 0 0 0 1 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 1 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 7 1 0 0 3 2 3 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 7 TA = 11
1 AG + 0 GA + 2 CT + 0 TC = 3
3 GT + 2 TG + 3 CA + 0 AC = 8
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7303396|gb|AE003821.1|AE003821 Drosophila melanogaster genomic scaffold 142000013386047 section 31 of 52, complete sequence
Position Repeat Coverage Repeat
28021 TA * 11 20/22 TA TA TT TA TA TA TA TA TA CA TA
28590 CA * 14 26/28 CA CT CA CA CA CA CA CA CA CA CA CA CA AA
29401 TA * 10 18/20 TA TA TA TA TA TA TG TA TA CA
30707 TG * 10 18/20 TG TG TG TG TG TG TG TG TG GC
38011 AT * 11 20/22 AT AT AA AT AT AT AT AT AT AT AA
38832 CA * 10 18/20 CA CA CA CA CA CA CA CA CT CT
64660 TA * 10 18/20 TA TA CA TA TA TA TA TA TG TA
64683 TA * 13 24/26 TA TC TT TA TA TA TA TA TA TA TA TA TA
75575 AC * 11 20/22 AC AC AC AC AC AC AC AC AT AC AG
81770 CA * 10 18/20 CA AA CA CA CA CA CA GA CA CA
89892 TG * 12 22/24 TG TG TG TG CT TG TG TG TG TG TG TG
99882 AT * 10 18/20 AT AT AT AC AT AT AT AT AT TT
111458 AC * 11 20/22 AC AC CC AC AC AC AC AC AC TC AC
112684 CA * 10 18/20 CA CA AC CA CA CA CA CA CA CA
141031 TG * 13 24/26 TG TG TT TG TG TG TG TG TG TG TG TG TA
201925 TA * 10 18/20 TA GA TA TA TA TC TA TA TA TA
220185 CA * 10 18/20 CA CA CA CA CA CA CA CA CA AC
223527 GT * 16 29/32 GT GT TT GT GT GT GT GT GT GT GT GT GA GT GA GT
227282 CA * 10 18/20 CA CA AA CT CA CA CA CA CA CA
229012 AC * 10 18/20 AC AC AC AT AC AC AC AC AC TC
236929 TA * 13 24/26 TA TA TA CA TA TA TA TA TA TA AA TA TA
265957 GT * 10 18/20 GT GT GT GT GT GT GT GT AT GC
271447 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TA TT
272252 CA * 17 32/34 CA CA CA CA CA CA CA CA CA CA CA CA CA GA AA CA CA
272677 TA * 10 18/20 TA TA TA TA TA TG TA TG TA TA
277484 CA * 10 18/20 CA CA CA CA CA CA CA CA GG CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 290711
Total number of repeats detected.............. 26
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 7 0 0 3 7 4 1 0 0 0 0
15 to 19 0 0 0 0 0 1 0 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 7 0 0 3 8 4 2 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 7 TA = 9
0 AG + 0 GA + 0 CT + 0 TC = 0
2 GT + 4 TG + 8 CA + 3 AC = 17
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7303370|gb|AE003820.1|AE003820 Drosophila melanogaster genomic scaffold 142000013386047 section 30 of 52, complete sequence
Position Repeat Coverage Repeat
2807 AT * 13 24/26 AT AT AT GT AT AT AT AT AT AT AC AT AT
16779 AT * 10 19/20 AT GT AT AT AT AT AT AT AT AT
30361 AC * 11 20/22 AC GC AC CC AC AC AC AC AC AC AC
40032 AC * 11 20/22 AC AC AT AC AC AC AC AC AC TC AC
49675 GT * 10 18/20 GT GT GT GT AG GT GT GT GT GT
50612 CA * 16 29/32 CA CA CA CA CA CA CA CA CA CA CA CA CT CC CC CA
54343 TA * 14 26/28 TA TA TT TA TA TA TA TA TA TA TA TA TT TA
56823 GT * 10 18/20 GT GT GT GC GT GT GT GT GT GA
65994 CA * 12 22/24 CA TA CA CA CA CA TA CA CA CA CA CA
66272 TG * 15 28/30 TG TG TG TG TG TG TG TG TG TG TG TG TG CG AG
67632 TG * 13 24/26 TG TG TG TG TG TG TG TG TG GG TG GG TG
72915 CA * 12 22/24 CA CT CA CT CA CA CA CA CA CA CA CA
80077 AG * 11 20/22 AG AG AG CG AG AG AG AG TG AG AG
82818 TA * 10 18/20 TA TA CA TA TA TA TA TA TG TA
87994 TG * 12 22/24 TG TG TG GG GG TG TG TG TG TG TG TG
88911 AT * 10 18/20 AT AT AT AT AT AT AT AT AT TC
90731 AG * 11 20/22 AG AG GG AA AG AG AG AG AG AG AG
103965 CA * 18 33/36 CA CG CA CA CA CA CA CA CA CA CA CA CA CA CA CG CA GA
105039 TG * 10 18/20 TG TC TG TG TG TG TG TG TG CG
106347 GA * 11 21/22 GA GA AA GA GA GA GA GA GA GA GA
116216 AC * 11 20/22 AC CC AC AC AC AC AC AC AC AA AC
129944 CA * 12 22/24 CA CG CG CA CA CA CA CA CA CA CA CA
135710 AC * 17 31/34 AC AC AC AC AC AC AC AC AC AC GC AC AC AC TC AC AT
137132 TC * 10 18/20 TC TC TC TC TA TC TC TA TC TC
149632 AT * 11 20/22 AT AT AG AT AT AT GT AT AT AT AT
180794 AC * 11 20/22 AC AC AC AC GC AC AC TC AC AC AC
181193 GT * 20 36/40 GT AT GT GT GC GT GT GT GT GT GT GT GT GT GT GT GT GT GT AG
190506 GT * 10 18/20 GT GT GT GT GA GT GT GT TT GT
191110 GT * 10 18/20 GT GC GT GT GT GT GT GT GT TT
200458 AT * 12 22/24 AT AT AC AT AT AT AC AT AT AT AT AT
201690 AT * 10 18/20 AT AT AT AT GC AT AT AT AT AT
223758 AT * 10 18/20 AT AT AC AT AT TT AT AT AT AT
257188 CA * 10 18/20 CA CA GA CA CA CA AA CA CA CA
257213 CA * 10 18/20 CA CA CA CA CA CA CA TA CT CA
272186 TG * 10 18/20 TG TG TG CG TG TG TG TG TG TC
-----------------------------------------------------------------------------------------
Total sequence length......................... 272870
Total number of repeats detected.............. 35
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 7 2 2 1 4 5 4 4 1 0 0 0
15 to 19 0 0 0 0 1 2 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 1 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 7 2 2 1 5 7 5 5 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
7 AT + 2 TA = 9
2 AG + 1 GA + 0 CT + 1 TC = 4
5 GT + 5 TG + 7 CA + 5 AC = 22
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7303326|gb|AE003819.1|AE003819 Drosophila melanogaster genomic scaffold 142000013386047 section 29 of 52, complete sequence
Position Repeat Coverage Repeat
123 CA * 12 22/24 CA CA CA CA CA CA CA CA CG CA TA CA
334 AC * 11 20/22 AC AC AC AC AC AC AC CC AC AC AG
1673 CA * 13 24/26 CA AA CA CA CA CA CA CA AA CA CA CA CA
2044 TG * 10 18/20 TG TG TG TG TG TG TG TG TT GG
6005 GT * 15 27/30 GT GT GT GT GT GT GT GT GT GT GT GT GG GG GG
10994 AC * 11 21/22 AC AC AC AC AC AC AC AC AC AC AA
11913 AC * 11 20/22 AC AC AC AC AC GC AC AC AC AC AG
12072 CA * 10 18/20 CA CA CA CA CA CA CA CA CC TA
12093 AC * 12 22/24 AC AC AC GC AC AC AC AC AC AC AC AA
14377 GT * 13 24/26 GT GT GA AT GT GT GT GT GT GT GT GT GT
14930 CA * 11 20/22 CA CA CA CA CA CA CG CA CA GA CA
15153 CA * 11 20/22 CA CA CT CG CA CA CA CA CA CA CA
21159 CA * 12 22/24 CA CA CA CA CA CG CA CA CG CA CA CA
23147 CA * 15 27/30 CA CA CA CA CA CA CA CA CA CA CA AT CA CA GA
23355 TG * 13 24/26 TG TG TG TG TG TG TG TG CG TA TG TG TG
23476 CA * 16 29/32 CA CA CC CG CA CA CA CA CA CA CA CA CA CA CA CG
24526 AG * 10 18/20 AG AG AG AG AG AG GG AT AG AG
33654 AT * 10 18/20 AT AC AT AT AT AT AT AT AA AT
50325 AT * 12 22/24 AT AT AT AT AT AT AC AT AC AT AT AT
51067 TA * 13 24/26 TA TA AA TA TA TA TA TA TA TA AA TA TA
57548 AT * 12 22/24 AT AT TT AC AT AT AT AT AT AT AT AT
78900 AT * 13 25/26 AT AT AT AT GT AT AT AT AT AT AT AT AT
81259 GT * 12 22/24 GT AT GT GT GT GT GT GT GT GT GT GC
85243 TA * 12 22/24 TA TA TA TA TA TA TG TA TA TA TA TC
140278 AC * 10 18/20 AC AC AC AT AG AC AC AC AC AC
141066 TG * 11 20/22 TG TG TG TG CG TG CG TG TG TG TG
156489 TA * 10 18/20 TA CG TA TA TA TA TA TA TA TA
180588 GT * 10 18/20 GT GT GT GT GT GC GT GT AT GT
214862 TG * 11 20/22 TG CG TG TG TG TG TG TG TG GG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 237528
Total number of repeats detected.............. 29
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 3 1 0 5 6 4 3 0 0 0 0
15 to 19 0 0 0 0 0 2 0 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 3 1 0 5 8 4 4 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 3 TA = 7
1 AG + 0 GA + 0 CT + 0 TC = 1
4 GT + 4 TG + 8 CA + 5 AC = 21
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7303288|gb|AE003818.1|AE003818 Drosophila melanogaster genomic scaffold 142000013386047 section 28 of 52, complete sequence
Position Repeat Coverage Repeat
402 CA * 13 24/26 CA CC AA CA CA CA CA CA CA CA CA CA CA
1950 CA * 10 18/20 CA CA CA CA CA CA AA CA CA CT
7857 CA * 10 18/20 CA CA CA CA CA TA CA CA CA AA
8668 AC * 12 22/24 AC GC AC AC AC AC AC AC AC GC AC AC
8797 AC * 10 18/20 AC AC AC GC AG AC AC AC AC AC
14186 AT * 10 18/20 AT AT AT AC AT AT AT AT TT AT
15752 GT * 10 18/20 GT AT GT AT GT GT GT GT GT GT
17000 GT * 16 29/32 GT GT AT AT GT GT GT GT GT GT GT GT GT GT GT TT
27709 TG * 12 22/24 TG TG TG TG TG TG TG AG TG TG AG TG
53584 CA * 10 18/20 CA CA CA CT CA CA CT CA CA CA
79893 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AT TA
90913 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT TT AT
91174 CA * 10 18/20 CA CG CA CA CA CA CC CA CA CA
94241 AT * 10 18/20 AT AT TT AT AT AT AT AT AT TT
117300 AT * 12 22/24 AT AT AT AT AT AT AT AT AT TT AT TT
153708 CA * 11 21/22 CA CA CA CA CA CA CA CA CA CA CC
175357 TA * 10 18/20 TA TA TA TA TA TA TT TA TA AA
192182 AC * 10 18/20 AC AC AC AC AC AC AC AG AC GC
202624 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CA TT
209900 AC * 14 26/28 AC GC AC AC AC AC AC AC AC AC AC AC TC AC
210110 TG * 10 18/20 TG TG TG TG TT TG TG TG TG AG
210463 CA * 11 20/22 CA CA CA CA CA CA CA CA CA AG CA
221724 GT * 11 20/22 GT GT GT GT GT GT GT GT GT GG AT
226639 CA * 13 24/26 CA CA CG CA CA CA CA CA CA CA CG CA CA
231974 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AA GC
243978 TG * 18 33/36 TG TG TG TC TG GG TG TG TG TG TG TG TG TG TG TG TT TG
244303 CA * 12 22/24 CA GG CA CA CA CA CA CA CA CA CA CA
247078 TA * 11 20/22 TA TA TA TA TA TA TA TA TA TC CA
248337 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AC AC TT
250754 TG * 10 18/20 TG TG TG TG TG TG TG TG TA TA
252061 AC * 12 22/24 AC AG AC GC AC AC AC AC AC AC AC AC
254587 TC * 10 18/20 TC TA TC TC TC TC CC TC TC TC
257082 AC * 11 20/22 AC AC AC AC AC AC AT AC AC AC TC
261324 AC * 12 23/24 AC AC AC AC AC AC AC AC AC AC AC AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 264644
Total number of repeats detected.............. 34
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 2 0 0 9 10 3 3 1 0 0 0
15 to 19 0 0 0 0 0 0 1 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 2 0 0 9 10 4 4 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 2 TA = 6
0 AG + 0 GA + 0 CT + 1 TC = 1
4 GT + 4 TG + 10 CA + 9 AC = 27
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7303263|gb|AE003817.1|AE003817 Drosophila melanogaster genomic scaffold 142000013386047 section 27 of 52, complete sequence
Position Repeat Coverage Repeat
13080 AT * 17 32/34 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TA
29279 AG * 17 31/34 AG AG AC AG AG AG AG AG AG AG AG AG AG AG AG GG TG
31714 TG * 11 20/22 TG TG TG TG TG TG TG TT TG CG TG
37489 CA * 26 47/52 CA CT CA CT CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA AA CA CA CA CG CA TA
43106 AG * 12 22/24 AG AG AG AG AG AG AG AG AG AA AG TG
44534 AT * 13 24/26 AT AT AT AT AT AT AT AG AT AT AT AT AC
49508 CA * 10 18/20 CA CA CA CA CA CA TT CA CA CA
57329 CA * 14 26/28 CA CA CA AA CA CA CA CA CA CA CA CA CA AA
60127 TA * 13 24/26 TA CA TA TG TA TA TA TA TA TA TA TA TA
64648 CA * 10 18/20 CA TA CA CA CA CA CA CA CA GA
82902 AT * 10 18/20 AT AT AT AT AT AT AT AT AT GG
87255 GA * 10 18/20 GA AA GA GA GT GA GA GA GA GA
89842 TG * 12 22/24 TG TG TG TG AG TG TG TG TG TG TG TT
91913 TA * 15 28/30 TA TA TA TA TC TA TA TA TA TA TA TA TA TA TT
117371 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG GA TG
119065 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CT AA CA CA
127656 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CA AC
139093 CA * 11 20/22 CA CC AA CA CA CA CA CA CA CA CA
141239 TG * 10 18/20 TG TG TG TG AG TG TG TG TG TA
150842 GT * 10 18/20 GT GT GT GT GT GT GT TT GT TT
151033 CA * 11 20/22 CA CA CA CA CA CT CA CT CA CA CA
152736 GT * 11 20/22 GT TC GT GT GT GT GT GT GT GT GT
163874 AC * 45 82/90 AC AC AC AC GC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AT GG GG CG
169292 AT * 13 24/26 AT AT CC AT AT AT AT AT AT AT AT AT AT
169519 GT * 11 20/22 GT GC AT GT GT GT GT GT GT GT GT
171000 GT * 11 21/22 GT GT GT GT GT GT GT GT GT GT GG
177947 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TC TT
178573 TG * 17 32/34 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TA TT
191360 TG * 10 18/20 TG TG TG TG TG TG TG TG TC TC
201157 AC * 12 22/24 AC AT CC AC AC AC AC AC AC AC AC AC
206507 GT * 10 18/20 GT GA GA GT GT GT GT GT GT GT
208851 CA * 13 24/26 CA AG CA CA CA CA CA CA CA CA CA CA CA
209924 CA * 14 26/28 CA CA CC CA CA CA CA CA CA CA CA CA TA CA
209977 AC * 12 22/24 AC TC AC TC AC AC AC AC AC AC AC AC
213966 AC * 13 24/26 AC GC AC AC AC AC AC AC GC AC AC AC AC
216533 TG * 12 22/24 TG TG TG TG TG TG TA TG TG TG TT TG
216584 GT * 10 18/20 GT GG GT GT GT GT GT GT GT GG
217551 AG * 11 20/22 AG AG AG AG AG AG AG AT AG AG AA
218249 TG * 11 20/22 TG TG TG TG CG TG CG TG TG TG TG
219799 CA * 10 18/20 CA CA CA CA CA CA CA CG CA GA
220990 TG * 13 24/26 TG TA TG TG TG TG TG TG TG TG TG TA TG
221676 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CA TC
225895 AG * 13 24/26 AG AG AG AG AA AG AG AG AG AG AC AG AG
227186 AC * 12 22/24 AC AC AC AA AC AC AC AC AC AC AC TC
227356 TG * 15 27/30 TG AG TG TG TG TG TG TG TG TG TG TG TG GG TT
228757 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA CA GT
231030 TG * 14 26/28 TG TA TG TG TG TG TG TG TG TG TG TG AG TG
231607 CA * 10 18/20 CA CA CA AA AA CA CA CA CA CA
233449 AT * 28 52/56 AT AT GT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT AT AT AT AC AT
233767 TA * 10 18/20 TA TA TA TT TA TA TA TT TA TA
235481 AG * 11 20/22 AG AG AG AT AG AC AG AG AG AG AG
245393 AC * 12 22/24 AC AC GC AC AC AC AC AC AC AC CC AC
245717 GT * 11 20/22 GT GC GT GT GT GT GT GT GT GT GG
248195 TG * 11 20/22 TG AG TG TG TG TG AG TG TG TG TG
249190 TA * 10 18/20 TA TT TA TA TA TA TA TA TA TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 262257
Total number of repeats detected.............. 55
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 3 4 1 5 13 11 7 0 0 0 0
15 to 19 1 1 1 0 0 0 2 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 1 0 0 0 0 1 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 1 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 4 5 1 6 14 13 7 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 4 TA = 9
5 AG + 1 GA + 0 CT + 0 TC = 6
7 GT + 13 TG + 14 CA + 6 AC = 40
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7303233|gb|AE003816.1|AE003816 Drosophila melanogaster genomic scaffold 142000013386047 section 26 of 52, complete sequence
Position Repeat Coverage Repeat
2743 GT * 11 20/22 GT GT GT GT GT GT GT GT GT GC TT
4216 TG * 12 22/24 TG AG TG TG TG AG TG TG TG TG TG TG
15516 AT * 10 18/20 AT AT AT AT AT AA AT AC AT AT
36760 TA * 12 22/24 TA TA TA TA TA TA TA CA TA TA TA TC
38244 CA * 12 22/24 CA CA TA CA CA CA CA CA CA GA CA CA
41821 TG * 11 20/22 TG TG TG TG TT TG TG TG TG TG CG
61510 CA * 12 22/24 CA AA CA CA CA CA CA CA CA CA CA GA
61734 TG * 13 24/26 TG TG TA TG TG TG TG AG TG TG TG TG TG
63542 CA * 15 27/30 CA CA CG CA CA CA CA CA CA CA CA CA CA TA GA
67835 AC * 10 18/20 AC AC AC AC AC AC AC AC AC TT
69629 TG * 18 34/36 TG TG CG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TA
69807 TG * 14 26/28 TG TG TG TG TG TG TG TG TG CG TG TG TT TG
70393 CA * 14 26/28 CA CA CA CA CA AA CA CA CA CA CA CA CA AA
70859 AC * 10 18/20 AC AG GC AC AC AC AC AC AC AC
72417 TC * 12 22/24 TC TA TC TC TT TC TC TC TC TC TC TC
72441 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG CC TG
75528 GA * 13 24/26 GA GA GC GA GA GA GC GA GA GA GA GA GA
78974 CA * 10 18/20 CA CA CT CA CA CA CA CT CA CA
85377 CT * 11 20/22 CT CT CT CT CT CT CT CT TA CT CT
87410 AT * 11 20/22 AT AT AT AT AT AT AT AC AT AT GT
89912 TA * 12 22/24 TA TA TA AA TA TA TA TA TA TA CA TA
90186 CA * 21 38/42 CA AG CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA TT
101075 CA * 16 29/32 CA CA CA CA CA CA CA CA CA CA CA CC CA CA CC CG
101485 TG * 22 40/44 TG CA TG TG TG TG TG TG TG TG TG TG TG TG TA TG TG TG TG TG TG AG
113663 AT * 11 20/22 AT AT AT AT AC AT AT AT AT AA AT
126565 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AC AA
159041 AG * 11 20/22 AG TG AG AC AG AG AG AG AG AG AG
163094 TA * 10 18/20 TA TA TA AA TA TA CA TA TA TA
164717 TA * 11 20/22 TA TA TA TA TA TA TA TA TC TA TT
169679 GA * 12 22/24 GA GA GA GA GA GA GA GA GA GA AA AA
170126 TA * 11 20/22 TA TA TA TA TA TA TA TA TA TT TT
181933 CA * 10 18/20 CA CA CA TA CA CA CA CA CA TA
186457 AT * 13 24/26 AT AT AT AT AT AT AT AT GT AT AT AT AA
202846 CT * 11 20/22 CT CT CT CA CT CT CT CT CT TT CT
205282 GT * 12 22/24 GT AT GT GT GT GT GT GT GT GT GC GT
215569 TA * 10 18/20 TA TA TA TA TA TC TA TA TA TT
218895 CT * 11 20/22 CT CT CC CT CT CT CT CT CT CT CA
220025 AT * 11 20/22 AT AT AT AT AT AT AT AT AT TT TT
241859 TA * 12 22/24 TA TA TA TA TT TA TA TA TA TA TA TT
252227 AC * 11 20/22 AC AA AC AC AC AC AC AC AC AC AG
-----------------------------------------------------------------------------------------
Total sequence length......................... 260779
Total number of repeats detected.............. 40
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 6 7 1 2 3 5 5 2 1 3 0 0
15 to 19 0 0 0 0 0 2 1 0 0 0 0 0
20 to 24 0 0 0 0 0 1 1 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 6 7 1 2 3 8 7 2 1 3 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
6 AT + 7 TA = 13
1 AG + 2 GA + 3 CT + 1 TC = 7
2 GT + 7 TG + 8 CA + 3 AC = 20
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7303189|gb|AE003815.1|AE003815 Drosophila melanogaster genomic scaffold 142000013386047 section 25 of 52, complete sequence
Position Repeat Coverage Repeat
18797 AT * 11 20/22 AT AT GT AT AT AG AT AT AT AT AT
21752 AT * 13 25/26 AT AT AC AT AT AT AT AT AT AT AT AT AT
29052 AT * 10 18/20 AT AT AT AT AT AT AT AT AG AG
33411 AC * 10 18/20 AC AT AC AC AC AC AC AC AC GC
45771 AT * 13 24/26 AT AT AT AC AT AT AT AT AT AT AT AT AG
67586 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GA GT GG
69589 GT * 10 18/20 GT GT AT GT GT GT GT GT GT CT
84451 TG * 12 22/24 TG TG TG TG TG TG TG TG TG AC TG TG
88280 AT * 11 20/22 AT AT AT AT AT AG GT AT AT AT AT
119198 AT * 12 22/24 AT AT AT AT AG AT AT AT AT AA AT AT
135812 AT * 12 22/24 AT AT AT AT AT AT AC AT AT AT AT TT
138877 GT * 12 22/24 GT TT GT GT GT GT GG GT GT GT GT GT
155091 TA * 10 18/20 TA CA TA TA TA TA TA TA TA CA
155293 TA * 12 22/24 TA TA TA TG TA TA AA TA TA TA TA TA
159677 AT * 10 18/20 AT AT AC AT AT AC AT AT AT AT
178916 CA * 12 22/24 CA CA CA CA CA CG CG CA CA CA CA CA
216487 TA * 15 27/30 TA TA TA TA TA TA TA TC TA AA TA TA TA TA TG
223919 TG * 10 18/20 TG TG TT TG TG TG TG TG CG TG
224311 AG * 10 18/20 AG GA AG AG AG AG AG AG AG AG
236201 GT * 11 20/22 GT GT GT GT GT GT GT GT GT GC GG
-----------------------------------------------------------------------------------------
Total sequence length......................... 240495
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 8 2 1 0 1 1 2 4 0 0 0 0
15 to 19 0 1 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 8 3 1 0 1 1 2 4 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
8 AT + 3 TA = 11
1 AG + 0 GA + 0 CT + 0 TC = 1
4 GT + 2 TG + 1 CA + 1 AC = 8
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7303162|gb|AE003814.1|AE003814 Drosophila melanogaster genomic scaffold 142000013386047 section 24 of 52, complete sequence
Position Repeat Coverage Repeat
47733 TA * 18 34/36 TA TA TA TA TA GA TA CA TA TA TA TA TA TA TA TA TA TA
49524 GT * 17 32/34 GT GT GT GT GT GT GT GT GA GT GT GT GT GC GT GT GT
56234 TG * 11 20/22 TG TG TG TG TG AG TG TG TG GG TG
64709 CT * 10 18/20 CT CT CA CT CT CT CT CT CT GT
66531 CA * 11 20/22 CA CA CA CA CA CA CA CA CG TA CA
69578 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG GA
72184 AT * 10 19/20 AT AA AT AT AT AT AT AT AT AT
73822 AG * 10 18/20 AG AG AA AG AT AG AG AG AG AG
80508 AT * 12 22/24 AT AT AT AT AT AT AC AT AC AT AT AT
84899 AG * 10 18/20 AG AG GC AG AG AG AG AG AG AG
95360 GT * 15 28/30 GT GT GA GT GT GT CT GT GT GT GT GT GT GT GT
101115 AC * 22 40/44 AC AC AC AC AC TC AC TC AC AC AC AC AC AC TC AC AC AC AC AC AT AC
131525 AC * 11 20/22 AC AC AT AC AC AC AA AC AC AC AC
150862 AC * 11 20/22 AC AC AC AC AC TC AC AC AC AC CC
154518 CT * 12 22/24 CT CT CT TT CT CT CT CT CT CT TT CT
168446 AG * 13 24/26 AG AG AG AG GG AG AG GG AG AG AG AG AG
174136 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TG TG TG TG AT GG
177291 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC AC TC AT
178874 TG * 11 20/22 TG TG TG TG TG TG TG TG TA TA TG
179715 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG CC
179761 TG * 11 20/22 TG TG TG TG TG TG TG TG TG GT TG
183269 GT * 11 21/22 GT GT GT GT GT GT GT AT GT GT GT
186939 AC * 13 24/26 AC TC AC AC AC AC AC AC AC AC AC AC AT
189270 TC * 17 31/34 TC TC TC TC TG TC TC TC GC TC TC TC TC TC TC CC TC
189312 GT * 10 18/20 GT CT CT GT GT GT GT GT GT GT
197014 GT * 13 24/26 GT GC GT GT GC GT GT GT GT GT GT GT GT
202692 AT * 11 21/22 AT AT AT AT AT AT AA AT AT AT AT
205989 TC * 12 22/24 TC TC CT TC TC TC TC TC TC TC TC TC
-----------------------------------------------------------------------------------------
Total sequence length......................... 260713
Total number of repeats detected.............. 28
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 0 3 0 4 1 5 3 1 2 0 0
15 to 19 0 1 0 0 0 0 1 2 1 0 0 0
20 to 24 0 0 0 0 1 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 1 3 0 5 1 6 5 2 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 1 TA = 4
3 AG + 0 GA + 2 CT + 2 TC = 7
5 GT + 6 TG + 1 CA + 5 AC = 17
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7303119|gb|AE003813.1|AE003813 Drosophila melanogaster genomic scaffold 142000013386047 section 23 of 52, complete sequence
Position Repeat Coverage Repeat
65447 TG * 10 18/20 TG CG TG TT TG TG TG TG TG TG
69090 TG * 11 20/22 TG AG TG TG TG TG TG TG TG TC TG
80551 TA * 12 22/24 TA TA TA TG TA CA TA TA TA TA TA TA
89691 AG * 11 21/22 AG AG AG AG AG AG AG AG GG AG AG
90494 CA * 13 24/26 CA CA CA CA CA CA CA GA CA CA CA CA TA
95448 AC * 13 24/26 AC AC CC AC AC AC AC AC AC AC AC AG AC
103295 CA * 13 24/26 CA CT CG CA CA CA CA CA CA CA CA CA CA
107586 AC * 12 23/24 AC AC GC AC AC AC AC AC AC AC AC AC
114038 TG * 12 22/24 TG TG TG CG TG TG TG TG TG TG TG TA
114221 AT * 10 18/20 AT AT AT AT AC AT AC AT AT AT
121306 TA * 10 18/20 TA TA TA TA TA TA TA TA TA GG
125086 TG * 11 20/22 TG TG TG TG TG TG TG TT TT TG TG
128365 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG CG AG TG
128598 CT * 10 18/20 CT CT CG CT CT CT CT CT CT CC
129204 CA * 10 19/20 CA CA CA CA CA CA CA TA CA CA
130572 TC * 13 24/26 TC TC TC TA TC TC TC TC TC TC TC TC TG
130722 AT * 10 18/20 AT AT AT AT AT AT AT AT AA CT
133881 TA * 10 18/20 TA TA TA TA TA TA TA AA AA TA
153486 TA * 10 18/20 TA TA GT TA TA TA TA TA TA TA
154733 TA * 13 24/26 TA TA TA TA TA TA TA TA TA TA TG TA TT
160181 CA * 12 22/24 CA CA CA TA CA CA CA CG CA CA CA CA
162236 TG * 12 22/24 TG AG CG TG TG TG TG TG TG TG TG TG
164045 CA * 12 22/24 CA AA TA CA CA CA CA CA CA CA CA CA
172789 AT * 10 18/20 AT AC AT AT AT AT AC AT AT AT
178355 AG * 20 36/40 AG AG AG AG AG AG GG AG AG AG AG AG AG AG AG AG AG TG AG GA
187879 CA * 11 20/22 CA CA CA AA CA CA AA CA CA CA CA
193656 TA * 12 22/24 TA TA AA TA TA TA TT TA TA TA TA TA
193726 AT * 10 18/20 AT AT AT AT AC AT AT AC AT AT
193747 TA * 12 22/24 TA TA AA TA TA TA TT TA TA TA TA TA
195057 GT * 10 18/20 GT GT GT GT AT GT GT GT CT GT
198425 AT * 15 27/30 AT AT AT AT AT AT AT AT GT AT AT AT AC AT AA
201030 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG TG CA
202052 AC * 11 20/22 AC AC AC AC AC AA AC AC AT AC AC
202407 TG * 12 22/24 TG TG TG TG TG TG TG TG TG GC TG TG
233976 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG TG GT
235310 GT * 13 24/26 GT GC CT GT GT GT GT GT GT GT GT GT GT
238920 CT * 12 22/24 CT CT CT CT CT CT CT CT CT TT CC CT
241282 TG * 11 20/22 TG CG TG TG TG TG TG TG TG CG TG
255309 CA * 10 18/20 CA CA CA CA CT CG CA CA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 258778
Total number of repeats detected.............. 39
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 7 1 0 3 7 10 2 1 2 0 0
15 to 19 1 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 1 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 7 2 0 3 7 10 2 1 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 7 TA = 12
2 AG + 0 GA + 2 CT + 1 TC = 5
2 GT + 10 TG + 7 CA + 3 AC = 22
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7303102|gb|AE003812.1|AE003812 Drosophila melanogaster genomic scaffold 142000013386047 section 22 of 52, complete sequence
Position Repeat Coverage Repeat
691 CA * 12 22/24 CA GA CA CA CA CA CG CA CA CA CA CA
14217 AG * 10 18/20 AG AG AG AG AG AG AG AA AA AG
22628 TG * 11 20/22 TG TG TG CG TG TG TG TG TG TC TG
33473 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GC GT TT
34248 TA * 12 22/24 TA TA TA TA TA AA TA TA TA TA TA AA
35024 TG * 12 22/24 TG TG TG CG TG TG TG TG TT TG TG TG
35147 AC * 10 18/20 AC GC AC AC AC AC AC AC AA AC
37220 AC * 12 22/24 AC AA AA AC AC AC AC AC AC AC AC AC
38004 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT CT AT
38035 GT * 12 22/24 GT CT GT GT GT GT GT GT GT GC GT GT
41793 AC * 11 20/22 AC AC CC AC AC AC AC AC TC AC AC
45571 TG * 10 18/20 TG AG TG TG TG TG TG TG TG TA
45943 AG * 11 20/22 AG AG AT AG AG AG AG AG AC AG AG
65158 TA * 12 22/24 TA TA TA TA TA TC TA TA CA TA TA TA
65183 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
65207 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
65231 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
65255 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
65279 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
65312 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
65336 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
65360 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
65385 TA * 11 20/22 TA TA TA CA TA TA TA CA TA TA TA
65408 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
65432 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
65456 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
65480 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
65504 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
65528 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
65552 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
65576 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
65609 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
65676 AT * 10 18/20 AT AT AT AC AT AT AT AC AT AT
65983 TA * 10 18/20 TA CA TA TA TA TG TA TA TA TA
70221 CA * 10 18/20 CA TA CA CA CA CA CA CA TA CA
71362 CA * 15 27/30 CA CA TA CA CA CA CA CA CA CA CA CA CA CC TA
76860 AC * 11 20/22 AC AC AC AC GC AC AC AC AC AT AC
82614 AC * 16 29/32 AC AC AC AC AC AC AC AC AC AC AC AT AC AC CC AA
99439 CA * 13 24/26 CA CA CA CA CG CA CA CA CA CA CA CA CG
102928 TG * 11 20/22 TG TA TG TG TG TG TG TG TG GG TG
143529 GT * 10 18/20 GT GT GT GT GC GT GT GC GT GT
152082 AT * 10 18/20 AT AC AT AT AT AC AT AT AT AT
153239 GT * 11 20/22 GT CT GT GT GT GT GA GT GT GT GT
156494 GT * 10 18/20 GT GA GT GT GT GT GT GT GT GG
183611 GT * 15 27/30 GT GA GT GA GT GT GT GT GT GT GT GT GT GT GC
186413 AC * 12 22/24 AC TC AC AC AC AT AC AC AC AC AC AC
186636 AG * 10 18/20 AG TG AG AG AG AC AG AG AG AG
187335 CA * 16 29/32 CA CG CA CA CA CA CA CA CA CA CA CA CA CA CA AG
193098 GA * 13 24/26 GA CA GA GA GA GA GA GA GA GC GA GA GA
193878 TA * 11 20/22 TA TA GA TA TA TA TA TA CA TA TA
194866 GT * 13 24/26 GT GT GT GT GT GT GT GT GC GA GT GT GT
197807 TG * 15 27/30 TG TG TG TG TC TG TG TG TG TG TG TG GG TG TC
208139 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT AG GT
212058 GT * 10 18/20 GT AT GT TT GT GT GT GT GT GT
212309 TA * 12 22/24 TA TA TG TA AA TA TA TA TA TA TA TA
243778 TC * 11 20/22 TC TC TC CC TC TC TC TC TC TG TC
243814 TC * 13 25/26 TC TC TC TC TC TC TC TC TC TC TC TC TT
-----------------------------------------------------------------------------------------
Total sequence length......................... 257946
Total number of repeats detected.............. 57
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 19 6 3 1 5 3 4 9 2 0 0 0
15 to 19 0 0 0 0 1 2 1 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 19 6 3 1 6 5 5 10 2 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
19 AT + 6 TA = 25
3 AG + 1 GA + 0 CT + 2 TC = 6
10 GT + 5 TG + 5 CA + 6 AC = 26
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7303071|gb|AE003811.1|AE003811 Drosophila melanogaster genomic scaffold 142000013386047 section 21 of 52, complete sequence
Position Repeat Coverage Repeat
10325 TC * 10 18/20 TC CC TC TC TC TC TC TC TC TT
44248 TA * 13 24/26 TA AA TA TA TA TA TA TA TA TA TA TA TG
71697 CA * 13 24/26 CA CT CA CA CA AA CA CA CA CA CA CA CA
89350 CA * 11 20/22 CA CA CA CA AA CA CA CG CA CA CA
103362 GT * 10 18/20 GT GT GT AT GT GT TT GT GT GT
107183 TG * 12 22/24 TG TG TG TG TG TG TG CA TG TG TG TG
154186 AT * 10 18/20 AT TT AT AT AT AT AT AT AT GT
173768 GT * 12 22/24 GT GT GT GA GT GT GT GT GT GT GT GG
248998 CA * 10 18/20 CA TG CA CA CA CA CA CA CA CA
249032 AC * 10 18/20 AC AC AC AC AC AC AC AC AC TT
250074 TA * 11 20/22 TA TA TA TA TA TA TA TG TA TG TA
254937 TA * 10 18/20 TA TA TA TA AA TT TA TA TA TA
256986 CA * 13 24/26 CA CA CA CA CA CA CA CA TA CA TA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 259379
Total number of repeats detected.............. 13
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 3 0 0 1 4 1 2 1 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 3 0 0 1 4 1 2 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 3 TA = 4
0 AG + 0 GA + 0 CT + 1 TC = 1
2 GT + 1 TG + 4 CA + 1 AC = 8
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7303048|gb|AE003810.1|AE003810 Drosophila melanogaster genomic scaffold 142000013386047 section 20 of 52, complete sequence
Position Repeat Coverage Repeat
9448 CA * 12 22/24 CA CT CA CA CA CA CA CG CA CA CA CA
11155 CT * 13 24/26 CT CT CT CT CT CT AT CT CT CT CT CT CA
15804 GT * 10 18/20 GT GT GT GT GT GT GC GA GT GT
16048 TG * 10 18/20 TG TG TG CG TG TG TG TG TG TC
16278 GA * 11 20/22 GA GT GC GA GA GA GA GA GA GA GA
18640 CA * 11 21/22 CA TA CA CA CA CA CA CA CA CA CA
21913 CA * 11 20/22 CA CA CA CA CA CA CA AA CA AA CA
22261 CT * 13 24/26 CT CT CT TT CC CT CT CT CT CT CT CT CT
27130 TG * 15 28/30 TG TG TG TG TG TG TG TG TG TG TG TG TG TT TA
30259 GA * 11 20/22 GA GA GA GA CA GA GA GA CA GA GA
35791 CA * 11 21/22 CA CA CA CA CA CA CA CA AA CA CA
39949 TG * 12 22/24 TG TG TA TG TT TG TG TG TG TG TG TG
44783 AT * 10 18/20 AT AT AA AT AT GT AT AT AT AT
45746 CA * 13 24/26 CA CT TA CA CA CA CA CA CA CA CA CA CA
48531 TG * 11 20/22 TG TG TG TG TG TC TG GG TG TG TG
49089 AC * 11 20/22 AC AC AC AT AC AC AC AC AC AC AG
50213 TG * 12 22/24 TG TG TG CG TG TG TG TA TG TG TG TG
56311 GT * 11 20/22 GT GA GT GT GT GT GT GT GT GA GT
60098 CT * 11 20/22 CT CT CA CT CG CT CT CT CT CT CT
61018 TC * 10 18/20 TC TC TT TC TC TC TC CC TC TC
69054 CA * 10 18/20 CA CG CA CG CA CA CA CA CA CA
74570 GT * 11 20/22 GT GT AT GT GT GT GT GT GT GT GC
82738 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG AA
88482 CA * 13 24/26 CA GG CA CA CA CA CA CA CA CA CA CA CA
88604 GT * 11 20/22 GT GC AT GT GT GT GT GT GT GT GT
119923 TA * 12 22/24 TA TA TA TA TA TA TA TA AA GA TA TA
142548 AT * 10 18/20 AT AG AT AT AT AT AT GT AT AT
196621 TA * 10 18/20 TA TA CA TA TA TA TG TA TA TA
211307 AT * 10 18/20 AT AT AT AT AG AT AT AT AT GT
218817 CA * 10 18/20 CA CA CA CA CA GT CA CA CA CA
220821 TG * 10 18/20 TG TG TG TG TG TG TG AG TT TG
234209 GT * 11 20/22 GT CT CT GT GT GT GT GT GT GT GT
237053 TG * 10 18/20 TG CG TG AG TG TG TG TG TG TG
242161 CA * 17 31/34 CA CA CA CA CA CA CA CA CA CA CA CA CG CA CG CA GA
244650 AT * 10 18/20 AT AT AT AT AT AT TT AT TT AT
245605 AT * 10 18/20 AT AT AT AT AT AT AT AT GA AT
245641 AT * 10 18/20 AT AT AT AT AT AT TA AT AT AT
246025 CT * 25 46/50 CT CT CT CT CT CT CT CT CT CT CT CA CT CT CT GT CT CT CT CT TG CT CT CT CT
257936 CA * 10 19/20 CA CA CA CA CA CA CA CA CA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 258873
Total number of repeats detected.............. 39
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 6 2 0 2 1 9 7 5 1 3 0 0
15 to 19 0 0 0 0 0 1 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 1 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 6 2 0 2 1 10 8 5 1 4 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
6 AT + 2 TA = 8
0 AG + 2 GA + 4 CT + 1 TC = 7
5 GT + 8 TG + 10 CA + 1 AC = 24
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7303026|gb|AE003809.1|AE003809 Drosophila melanogaster genomic scaffold 142000013386047 section 19 of 52, complete sequence
Position Repeat Coverage Repeat
366 GT * 10 18/20 GT GT GT GT GT GT GT GT CT GG
1836 GT * 12 23/24 GT GT GT GT GT GT GT GT GT GT GT GC
10599 AC * 11 20/22 AC AC AC AC AC AC AT AC AC GC AC
13660 AG * 10 18/20 AG AG AG AG AG AG AG AG CG AT
19951 GT * 18 33/36 GT GT GT GC GT GT GT GT GT GT GT GT GT GT GA GG GT GT
43437 TG * 10 18/20 TG TG TG TG TG TG TG TG TG CA
60908 TA * 10 18/20 TA TA TA TA TT TA TA TA TA CA
77079 TA * 25 46/50 TA TA GC TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TC TG
142266 CA * 12 23/24 CA CA CA CA CA CA CA CG CA CA CA CA
145469 TG * 20 36/40 TG TG TG TG TG TG TG TG TG TG TG TG TG TA TG TG TG TG TA CT
147314 CA * 10 18/20 CA CA CA CA TA CA CA CA CA CC
151405 TA * 11 20/22 TA TA AA TA TA TA TA TT TA TA TA
158489 AT * 11 20/22 AT AT AT AT AT AT AT AT CT AA AT
158738 AT * 11 20/22 AT AT AT AT AT AA AT AT GT AT AT
161781 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TA CG
169667 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA TC CA
170135 TG * 12 22/24 TG TG TG TG TG TG TA TC TG TG TG TG
175386 AC * 11 21/22 AC AC AC AC AC AC AC AC AC AC AG
178678 CA * 17 32/34 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CT GA CA
181079 AC * 12 22/24 AC AC AA AC AC AC AC AC AC AC AC AG
182225 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TT TA
187839 AC * 16 29/32 AC AC AA AC AT AC AC AC AC AC AC AC AC AC AC AG
197003 GA * 12 22/24 GA GA AA AA GA GA GA GA GA GA GA GA
200825 GT * 10 18/20 GT GT GT GT GT GT GC GT GT TT
201656 CA * 12 22/24 CA CA CT CA CA CA CT CA CA CA CA CA
207002 GT * 10 18/20 GT GC GT GC GT GT GT GT GT GT
209886 CA * 17 31/34 CA CA CA CA CA CA CA CA CA CA CA CA CA CT CA GC CA
209937 GT * 10 18/20 GT GT TT GT GT GC GT GT GT GT
255757 GA * 11 20/22 GA GA AA GA GA CA GA GA GA GA GA
-----------------------------------------------------------------------------------------
Total sequence length......................... 260968
Total number of repeats detected.............. 29
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 2 1 2 3 4 4 5 0 0 0 0
15 to 19 0 0 0 0 1 2 0 1 0 0 0 0
20 to 24 0 0 0 0 0 0 1 0 0 0 0 0
25 to 29 0 1 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 3 1 2 4 6 5 6 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 3 TA = 5
1 AG + 2 GA + 0 CT + 0 TC = 3
6 GT + 5 TG + 6 CA + 4 AC = 21
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7302975|gb|AE003808.1|AE003808 Drosophila melanogaster genomic scaffold 142000013386047 section 18 of 52, complete sequence
Position Repeat Coverage Repeat
16455 AC * 10 18/20 AC GA AC AC AC AC AC AC AC AC
17184 CA * 10 18/20 CA CT CG CA CA CA CA CA CA CA
19211 TA * 10 18/20 TA TA TA TC TA TA TC TA TA TA
36663 CA * 10 18/20 CA CA CG CA CA CA CA TA CA CA
40987 AT * 10 18/20 AT AT AC GT AT AT AT AT AT AT
46072 AC * 12 22/24 AC AC AC AC AC AC AC AC GC AT AC AC
66694 GT * 11 20/22 GT CT GT GT GC GT GT GT GT GT GT
90557 GT * 12 22/24 GT GT GT AT GT GT GT TT GT GT GT GT
92658 AC * 23 42/46 AC AC AC AC CC GC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AG AG
93635 TG * 11 20/22 TG GC TG TG TG TG TG TG TG TG TG
99346 GT * 11 20/22 GT GT GT GT GT GT GT GT GC GT AT
113516 AT * 11 20/22 AT AG AT AT AT AC AT AT AT AT AT
115229 AT * 13 24/26 AT AG AT AT AT AT AT AG AT AT AT AT AT
115860 CA * 15 27/30 CA CA CA CA CA CA CA CA CA CA CA CA CT TA AA
123305 AC * 12 22/24 AC AC AT AC AC AC AC AC AC AC AC AT
126813 GT * 13 24/26 GT GT GT GG GT GT GT GT GT GT GT GT GC
128490 AT * 21 38/42 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AG AT AT GT AT GG
135326 TG * 11 20/22 TG TG TA TG TA TG TG TG TG TG TG
137219 TG * 12 22/24 TG TG TG TA TG TG TG TG TG TG TG TA
137305 AT * 11 20/22 AT AT AT AG AT AT AT AT AT AT TT
141844 CA * 14 26/28 CA CA CA CA CA CA CA CA CA CA CA CA CC GA
142064 CA * 27 50/54 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA AA CA CC CG AA
143547 AC * 20 36/40 AC AC AC AC AG CC AC AC AC AC AC AC AC AC AC AT AC AC AC AT
144061 TA * 13 24/26 TA TA TA TG TA TA TA TA TT TA TA TA TA
150877 TG * 10 18/20 TG TG TG TG TG TG TG TG TG GT
151210 TA * 11 20/22 TA AA TA TA TA TG TA TA TA TA TA
157283 GT * 12 23/24 GT GT GT GT GT GT GT GT GT GA GT GT
161217 AC * 13 24/26 AC AC AC AC AC AC AC AC AT AC AC AC GC
164254 CA * 10 18/20 CA CA CA CA CA CA CT CA CC CA
164611 AC * 18 33/36 AC AC TC AC AC AC AC AC AC AC AC AC AC AC AC AT GC AC
195193 TG * 11 20/22 TG TG TG TG TG TG TG TT CG TG TG
196040 AC * 22 41/44 AC AC TC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC TA
209553 AT * 11 20/22 AT TT AT AT AT AT AT AT AT AT TT
225214 TA * 12 23/24 TA TA TG TA TA TA TA TA TA TA TA TA
254511 GT * 10 18/20 GT GT GC GT GT GT GT GT GT GC
-----------------------------------------------------------------------------------------
Total sequence length......................... 262173
Total number of repeats detected.............. 35
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 4 0 0 4 4 5 6 0 0 0 0
15 to 19 0 0 0 0 1 1 0 0 0 0 0 0
20 to 24 1 0 0 0 3 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 1 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 6 4 0 0 8 6 5 6 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
6 AT + 4 TA = 10
0 AG + 0 GA + 0 CT + 0 TC = 0
6 GT + 5 TG + 6 CA + 8 AC = 25
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7302923|gb|AE003807.1|AE003807 Drosophila melanogaster genomic scaffold 142000013386047 section 17 of 52, complete sequence
Position Repeat Coverage Repeat
4395 GT * 10 18/20 GT GG TT GT GT GT GT GT GT GT
6778 CA * 12 22/24 CA CA CA CT CG CA CA CA CA CA CA CA
17930 TA * 12 22/24 TA TA TG TT TA TA TA TA TA TA TA TA
30018 TA * 10 18/20 TA TA TC TA TA TA TA TA TA TG
32353 AC * 15 28/30 AC AC AC AC AC AC AC AC AC TC AC AC AG AC AC
33212 TG * 10 18/20 TG TG TG CA TG TG TG TG TG TG
43997 CA * 12 22/24 CA TG CA CA CA CA CA CA CA CA CA CA
45382 GT * 12 22/24 GT GT GT GT GC GT GT GT GT TT GT GT
45583 AG * 12 22/24 AG AG AA AG AA AG AG AG AG AG AG AG
52183 TC * 16 29/32 TC TC AC TC TC TC TC TC TC TC TC TC TC TC TC CT
54569 AC * 11 20/22 AC AC AT AA AC AC AC AC AC AC AC
55576 TG * 10 19/20 TG TG TG TG TG TA TG TG TG TG
61798 AC * 15 28/30 AC AC CT AC AC AC AC AC AC AC AC AC AC AC AC
63246 CA * 12 22/24 CA CA TG CA CA CA CA CA CA CA CA CA
66093 AC * 11 21/22 AC AC AC AC AC AC AC AC AC AC AG
66121 AC * 10 18/20 AC GC AC GC AC AC AC AC AC AC
66713 CA * 11 20/22 CA AA CA GA CA CA CA CA CA CA CA
66769 TG * 12 22/24 TG TC TG TG TG TG TG TG TG CG TG TG
67095 CA * 11 20/22 CA CA CT CA CA CA CA CA CA CA CT
75464 TG * 15 27/30 TG TA TG TG TG TG TG TG CG TG TG TG TG TG AG
79943 AG * 16 29/32 AG AG AG AG AG AG AG AG AG AG AG AA GG AG AG AA
89380 CA * 12 22/24 CA CT CA CA CA CA CA CA CA CA GA CA
90454 AG * 18 33/36 AG GG AG AG AG AG AG AG AG AG AG AG AG AG AG AG GG AA
103632 AT * 10 18/20 AT AT AT AT GT AT GT AT AT AT
104587 TG * 17 32/34 TG TG TG CG TG TG TG TG TT TG TG TG TG TG TG TG TG
118026 AG * 15 27/30 AG AG AG AG AG AG AG AG AG GG AG AG AG AG CC
124978 AC * 12 22/24 AC AC AC AC AG AT AC AC AC AC AC AC
125582 TG * 10 18/20 TG TG TG TG TG CG CG TG TG TG
125612 GT * 10 18/20 GT GT GT GT GC GT GT GT GT AT
125773 GT * 11 20/22 GT GT GT GT GT GT GC GT GC GT GT
129563 GT * 11 20/22 GT GT GT GT GT GT AT GT GT GT GC
151868 AT * 10 18/20 AT AT AT AT AT AT AT AT AT TA
154309 CA * 13 24/26 CA GA CA CA CA CG CA CA CA CA CA CA CA
159716 TA * 10 18/20 TA TA CA TA TA TA TA TA TG TA
178328 AG * 12 22/24 AG AG GG AG AG GG AG AG AG AG AG AG
186183 CA * 10 18/20 CA CA CA AA CA CA TA CA CA CA
186503 CT * 10 18/20 CT CT CT CT CT CT CT CT GA CT
198543 TG * 16 29/32 TG AG TG TG TG TG TG TG TG TG TG TG TG CG TG TA
207547 CA * 10 18/20 CA CA CA TA CA CA CA AA CA CA
209504 CA * 20 36/40 CA CA CA CA CA CA CA CA CA CA CA CA CA CT TA AA CA CA CA TA
221962 GT * 12 23/24 GT GT AT GT GT GT GT GT GT GT GT GT
235509 GT * 10 18/20 GT AT GT GT GT GT GT GT GA GT
235772 CT * 10 18/20 CT CT CT CT CT CT CT CT TT CC
246633 TG * 12 22/24 TG TG TG TG TG TG TG TG AT TG TG TG
248647 AT * 11 20/22 AT GT AT AT AT AT GT AT AT AT AT
252429 AT * 10 19/20 AT AT AT AT AT AT AT AA AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 260067
Total number of repeats detected.............. 46
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 3 2 0 4 9 5 7 0 2 0 0
15 to 19 0 0 3 0 2 0 3 0 1 0 0 0
20 to 24 0 0 0 0 0 1 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 3 5 0 6 10 8 7 1 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 3 TA = 7
5 AG + 0 GA + 2 CT + 1 TC = 8
7 GT + 8 TG + 10 CA + 6 AC = 31
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7302890|gb|AE003806.1|AE003806 Drosophila melanogaster genomic scaffold 142000013386047 section 16 of 52, complete sequence
Position Repeat Coverage Repeat
14214 AC * 11 20/22 AC AC AC AC AC GA AC AC AC AC AC
15581 TG * 10 18/20 TG TG TA TG TA TG TG TG TG TG
23431 CA * 19 35/38 CA CC CA CA CA CA CA CA CA CA CA CA CA CA AA CA CA CA CG
30428 AT * 14 26/28 AT AT AT AT AT AT AT AT AT AT TT AA AT AT
40419 TG * 15 27/30 TG CG GG TG TG TG TG TG TG TG TG TG TG TG TC
40869 GT * 10 18/20 GT GT GT GT GT GT GC TT GT GT
42794 AT * 11 20/22 AT AT AT AC AT AT AT AT AT AT AG
45205 CA * 10 18/20 CA CA AA CA CA CA CA CA AA CA
48417 AC * 11 20/22 AC AC AC AC AC AC AC AT AC AC AA
49650 CA * 11 20/22 CA CA CA CA CA CA CA CA CA GA GA
82078 CA * 10 18/20 CA CT CA CA CA CT CA CA CA CA
84270 TG * 13 24/26 TG TG TG TG TA TG TG TG TG TG TG TA TG
84527 AC * 10 18/20 AC AC GC AC AC TC AC AC AC AC
88352 GT * 10 18/20 GT GT GT GT GT GC GT GT AT GT
101249 GT * 10 18/20 GT GT GT GT GT GT GA GT TT GT
112571 GT * 11 20/22 GT GT GT GT GT GT GT GT AT GT GG
113899 AT * 16 29/32 AT AT AT GT AC AT AT AT AT AT AT AT AT AT AT AC
123435 TA * 10 18/20 TA TC TA TA TA TG TA TA TA TA
131474 AC * 12 23/24 AC AC AC AC AC AC AC AC AC AC GC AC
142285 TC * 13 25/26 TC TC TC TC TC TC TC TC TC TC TC TG TC
144236 TG * 11 20/22 TG AG TG TA TG TG TG TG TG TG TG
146088 AC * 12 22/24 AC AC AC AC AC AC AT AC AC AA AC AC
151137 AT * 11 20/22 AT AT AT AT AT AT AT AT AC AC AT
151609 AT * 11 20/22 AT AT AT AT AT AT AT AA AT AT AA
153430 AT * 13 24/26 AT AT AT AT GT AT AT AT AT AT AT GT AT
157771 AT * 10 18/20 AT AT AT AG AT AT AT AA AT AT
160501 GT * 11 20/22 GT GT GT GT GT GT GT GT GT GT TG
167597 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG GC
173278 AT * 11 20/22 AT AT AC AT AT AT AT AT GT AT AT
176720 AC * 16 29/32 AC TC AC AC AC AC AC AC AC AC AC AC AC AC AA AT
187424 TG * 11 21/22 TG AG TG TG TG TG TG TG TG TG TG
187547 CA * 17 31/34 CA CA AA CA CA CA CA CA CA CA CA CA CA CA CA TA TA
191174 CA * 11 20/22 CA CA CA CA CA CA CA CC CA CT CA
191382 CA * 11 20/22 CA CA CA CA CA CC CC CA CA CA CA
208782 CA * 11 20/22 CA CG CA CT CA CA CA CA CA CA CA
210971 AC * 11 20/22 AC AG AC AC AC AC AC GC AC AC AC
211723 GT * 13 24/26 GT GT GC GT GT GT GT GT GT AT GT GT GT
217614 CA * 12 22/24 CA AA CA CA CA CA CA CA CA CA CA CG
219174 GT * 18 33/36 GT CT GT GT AT GT GT GT GT GT GT GT GT GT GT GT GT GA
220261 GT * 11 20/22 GT GT GT GT GA GT GT GT GT GT GC
222407 AC * 11 20/22 AC AT AC AC AC AC AC AC AC AA AC
223795 TA * 13 24/26 TA TA TA TA TG TA TA TA TA TA TA TA TT
225283 AG * 14 26/28 AG AG AG TG AG AG GG AG AG AG AG AG AG AG
228896 GT * 16 30/32 GT GT GT GG GT GT GT GT GT GT TT GT GT GT GT GT
241216 AC * 12 22/24 AC AC AC AC AC AC AC AT AC AC AC AT
244855 CA * 12 22/24 CA CA CA CA CA CA CA CA CA GC CA CA
244891 TG * 11 20/22 TG AG CG TG TG TG TG TG TG TG TG
245972 AC * 10 18/20 AC AC AC AC AC AC AC AC AG CC
246812 GT * 13 24/26 GT GT GC AT GT GT GT GT GT GT GT GT GT
248290 CA * 10 18/20 CA CA CA CA CA CA CA CC CA CT
249128 CA * 11 21/22 CA CA CA CA CA CA CA TA CA CA CA
251014 CA * 13 24/26 CA CA CA CA TA CA CA CA TA CA CA CA CA
252142 TG * 10 18/20 TG CG TG TG TG TG TG TG TG AG
252481 AC * 12 22/24 AC AC AT AC TC AC AC AC AC AC AC AC
254868 CA * 13 24/26 CA CA CA CA CA CA CG TA CA CA CA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 268219
Total number of repeats detected.............. 55
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 7 2 1 0 10 12 7 8 1 0 0 0
15 to 19 1 0 0 0 1 2 1 2 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 8 2 1 0 11 14 8 10 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
8 AT + 2 TA = 10
1 AG + 0 GA + 0 CT + 1 TC = 2
10 GT + 8 TG + 14 CA + 11 AC = 43
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7302851|gb|AE003805.1|AE003805 Drosophila melanogaster genomic scaffold 142000013386047 section 15 of 52, complete sequence
Position Repeat Coverage Repeat
4468 TA * 15 28/30 TA AA TA TA TA TA TA TA TA TA TG TA TA TA TA
55718 AT * 11 20/22 AT AC AT AT AC AT AT AT AT AT AT
56153 CA * 16 29/32 CA CT CG CA CA CA CA CA CA CA CA CA CA CA CA CG
59306 CA * 11 20/22 CA CA CA AA CA CA CT CA CA CA CA
61407 CA * 16 29/32 CA CG CA CA AA CA CA CA CA CA CA CA CA CA CG CA
63295 CA * 11 20/22 CA GA CA CT CA CA CA CA CA CA CA
63670 AT * 16 29/32 AT AT AT AT AT AT AT AC AC AT AT AT AT AT AT TT
89727 AC * 13 24/26 AC AC AC AC AC AT AC AC AC AC AC AC AA
91793 CA * 13 24/26 CA CA CA CT CA CA CA CA CA CA CA CA CT
98604 TG * 12 23/24 TG TG TG TG TG TG TG TG TA TG TG TG
104170 CA * 12 22/24 CA CT CA CA CA CA CA CA CA CA CA GA
104841 CT * 11 20/22 CT CC CT CT CT CG CT CT CT CT CT
107033 AC * 10 18/20 AC AC GC AC AC AC AC AC AC AA
162192 AC * 26 47/52 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AG TC TT AA
165020 GT * 11 20/22 GT GA TT GT GT GT GT GT GT GT GT
165212 CA * 11 21/22 CA CA CA CA CA CA GA CA CA CA CA
166758 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA CC CG
185189 TG * 11 20/22 TG TG TA TG TG TG TG TG TG TT TG
199749 AT * 10 19/20 AT AC AT AT AT AT AT AT AT AT
228351 AT * 16 29/32 AT AT AT AT AT AT AT AT AT AT AA AT AT AT AA TT
232203 GT * 13 24/26 GT GT GT GA GT GT GT GT GC GT GT GT GT
261631 TG * 12 22/24 TG TG TT TG TG TG TG TA TG TG TG TG
264548 TG * 10 18/20 TG TG TG TC TC TG TG TG TG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 270307
Total number of repeats detected.............. 23
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 0 0 0 2 6 4 2 0 1 0 0
15 to 19 2 1 0 0 0 2 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 1 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 1 0 0 3 8 4 2 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 1 TA = 5
0 AG + 0 GA + 1 CT + 0 TC = 1
2 GT + 4 TG + 8 CA + 3 AC = 17
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7302807|gb|AE003804.1|AE003804 Drosophila melanogaster genomic scaffold 142000013386047 section 14 of 52, complete sequence
Position Repeat Coverage Repeat
1779 AT * 12 22/24 AT AT AT AT AC AT AT AT AT AT GT AT
4155 AT * 12 22/24 AT AT AT AT AT TA AT AT AT AT AT AT
8417 AC * 11 20/22 AC GC AC AC AC AC AC AC AC AC AT
26908 TC * 11 20/22 TC TC CC TC TC TC TC TC TC TT TC
30724 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG CG TG TA
58186 AC * 13 25/26 AC AC AC AC AC AC AC AC AC AC AC AC AT
66215 TA * 17 31/34 TA TG TA CA TA TA TA TA TA TA TA TA TA TA TA TA TG
69859 CA * 10 18/20 CA GA CA CA CA CG CA CA CA CA
91044 TA * 17 32/34 TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TC
140714 TA * 10 18/20 TA TA TA TA TA TA CT TA TA TA
158249 AG * 24 44/48 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG CC AA AC
162186 TA * 10 18/20 TA CC TA TA TA TA TA TA TA TA
189610 TA * 10 18/20 TA AA TA TA TA TA AA TA TA TA
239312 AT * 10 18/20 AT AT AT AT AT AT AT AA CT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 259817
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 3 0 0 2 1 1 0 1 0 0 0
15 to 19 0 2 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 1 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 5 1 0 2 1 1 0 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 5 TA = 8
1 AG + 0 GA + 0 CT + 1 TC = 2
0 GT + 1 TG + 1 CA + 2 AC = 4
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7302766|gb|AE003803.1|AE003803 Drosophila melanogaster genomic scaffold 142000013386047 section 13 of 52, complete sequence
Position Repeat Coverage Repeat
4111 CA * 10 18/20 CA CA CT CA CA CA CA CA CG CA
29619 AT * 13 25/26 AT AT AT AT AT AT AT AT AT AC AT AT AT
30558 AT * 10 18/20 AT AC AT AT AT AT TT AT AT AT
32469 GT * 10 18/20 GT GT AA GT GT GT GT GT GT GT
34396 CA * 15 27/30 CA CA CA CA CA CA TA CA CA CA CA CA CT CA CC
36607 AC * 10 18/20 AC AC AC AC AC TC AC AT AC AC
36927 TG * 12 22/24 TG TG CG AG TG TG TG TG TG TG TG TG
39558 TG * 13 24/26 TG TA TG CG TG TG TG TG TG TG TG TG TG
62619 AG * 31 56/62 AG AG AA AG AG AG AG AG AG AG AG AG AT AG AG AG AG AG AG AG AG AG AG GT AG AG AG AG AG GC AG
68857 CA * 14 26/28 CA CG CA CA CA CA CA CA CA CA TA CA CA CA
72621 AT * 15 27/30 AT AT AT AT AT AT AT AT AT AT AT GT AT AC AC
76796 TG * 23 43/46 TG TT TG TT TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG CG
78267 TG * 18 33/36 TG TG TC TG TG TG TG TG TG TG TG TG TC TG TA TG TG TG
80226 CA * 15 28/30 CA CG CA CG CA CA CA CA CA CA CA CA CA CA CA
94760 AC * 10 18/20 AC AC GC AG AC AC AC AC AC AC
99372 GT * 10 19/20 GT GT GT GT GT GT GT GT GT GC
118328 GT * 10 18/20 GT GT GT GT GT GA GT GT GT AT
124505 AT * 11 21/22 AT AT AG AT AT AT AT AT AT AT AT
135915 CA * 10 18/20 CA CA CG AA CA CA CA CA CA CA
157985 GT * 13 24/26 GT GT GT GT GA GT GT GT GT GT GT GT GG
162197 TA * 12 22/24 TA AA TA TA TA TA TG TA TA TA TA TA
167363 GT * 11 20/22 GT GG TT GT GT GT GT GT GT GT GT
168015 TG * 13 24/26 TG TG TG TG TG TG TG TG GG TG AG TG TG
169701 GT * 10 18/20 GT GT GT TT GT GT GT GA GT GT
169722 TG * 10 18/20 TG TG TG TG TG TG TG CG TG TT
171364 AG * 10 18/20 AG AG AG AG AG AG AA AG AG AC
174219 AG * 10 18/20 AG AT AG AG AG AG AG AG AG CG
178707 GT * 12 22/24 GT GT GT GT GT GT GT TT GT GT GT CT
179702 TG * 10 18/20 TG TG TG TG AG TG CG TG TG TG
180127 GT * 10 18/20 GT GT GT GT GT GG GT GG GT GT
182846 CT * 14 26/28 CT CT CC TT CT CT CT CT CT CT CT CT CT CT
185214 GT * 10 18/20 GT GT GT GT GT GT GT GT TT TT
185245 GT * 14 26/28 GT GT AT GT GT GT GT GT GT GT GT GT GT GG
192262 CA * 10 18/20 CA CA CA CA CA CA CA CA GG CA
192624 CA * 14 26/28 CA CA CA CA CA CA TA TA CA CA CA CA CA CA
194584 TG * 10 18/20 TG CT TG TG TG TG TG TG TG TG
195103 AC * 10 18/20 AC AA AC AC AC AC AC AC AC AT
196376 CA * 11 20/22 CA AA CA AA CA CA CA CA CA CA CA
197866 TA * 11 20/22 TA TA TA CT TA TA TA TA TA TA TA
199908 AC * 10 18/20 AC AC AC AC AC AC GC AC AC AT
208170 AT * 10 18/20 AT AC AT AT AT AT GT AT AT AT
210986 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AA AA
214700 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG GT TG TG
216708 CA * 10 18/20 CA CA CA CA CA CA CA CG CA CT
218435 AT * 18 33/36 AT AT AT CT AT AT AT AT AT AT AT AG AT AT AG AT AT AT
221384 AT * 16 29/32 AT AT GT AT AT AT AT AT AT AT AA AT AT AT AT GT
222586 CA * 18 33/36 CA TA CA CA CA CG CA CA CA CA CA CA CA CA CA CA GA CA
222801 TG * 11 20/22 TG TG TG TG CG TG TG TG TG TG TT
223325 GT * 11 20/22 GT GT GT GT GT GT GT GT AT GT GC
224154 GT * 10 18/20 GT GT GT GT GT GT GT GT GT CG
234588 TG * 10 18/20 TG TA TG TG TA TG TG TG TG TG
234764 TG * 13 24/26 TG TG TG TG TG TG TA TG TG TG CG TG TG
236291 TC * 10 18/20 TC GC TC TC TC TC TC TC TC AC
236314 CT * 10 18/20 CT CA CT CA CT CT CT CT CT CT
259998 AT * 16 29/32 AT AT AT AT AT AT AT AT AT GT AT AC AT AT GT AT
260441 TG * 12 22/24 TG GG TG TG TG TG TG TG TG TG TG TC
263530 TA * 10 18/20 TA TA TA TA TA TC TA TA GA TA
263725 AG * 13 24/26 AG AG AG AG AG AG AG AG AG AC AG AG CG
265471 GT * 15 27/30 GT AC GT GT GT GT GT GT GT GT GT GT GT GT GG
275093 GA * 12 22/24 GA TA GA GA GA GA GA GA GA GA GC GA
278910 GT * 13 24/26 GT GG GT GT GT GT AT GT GT GT GT GT GT
279248 TG * 16 29/32 TG TG TG TG TG AG TG TG TG TG TG TG TG TG TT TC
-----------------------------------------------------------------------------------------
Total sequence length......................... 282588
Total number of repeats detected.............. 62
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 3 3 1 4 7 11 13 1 2 0 0
15 to 19 4 0 0 0 0 3 2 1 0 0 0 0
20 to 24 0 0 0 0 0 0 1 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 1 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 9 3 4 1 4 10 14 14 1 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
9 AT + 3 TA = 12
4 AG + 1 GA + 2 CT + 1 TC = 8
14 GT + 14 TG + 10 CA + 4 AC = 42
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7302706|gb|AE003802.1|AE003802 Drosophila melanogaster genomic scaffold 142000013386047 section 12 of 52, complete sequence
Position Repeat Coverage Repeat
2028 TA * 13 25/26 TA TA TA TA TA TA TA TA TA TA TA TA TG
6207 CT * 14 26/28 CT CT CT CT CT CT CT CT CT CT CT CC CT GT
15316 TA * 21 38/42 TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TG CA CA TA
26232 CA * 19 35/38 CA CC CA CC CA CA CA CA CA CA CA CA CA CA CA CA CA CA AA
57707 TA * 10 18/20 TA CA TA TA TA TA TA TA TA TG
85097 AG * 12 22/24 AG CG AG AA AG AG AG AG AG AG AG AG
105369 TA * 11 20/22 TA TA TA CA TA CA TA TA TA TA TA
108289 AT * 14 26/28 AT AT TT AT AT AT AT AT AT AT AT AT TT AT
110504 AT * 12 22/24 AT AT TT AT AT AT AT AT AT AT AA AT
138071 TA * 10 18/20 TA TA TA TA TA TA TA TT TA AA
146031 TG * 10 18/20 TG GT TG TG TG TG TG TG TG TG
163787 GA * 11 20/22 GA GA GA GA GA GA GA GA AA GA AA
197978 AT * 14 26/28 AT AT AT AT AT TT AT AT AT AT AT AT GT AT
257134 AT * 12 22/24 AT AT AT TT AT GT AT AT AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 262401
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 4 1 1 0 0 1 0 0 1 0 0
15 to 19 0 0 0 0 0 1 0 0 0 0 0 0
20 to 24 0 1 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 5 1 1 0 1 1 0 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 5 TA = 9
1 AG + 1 GA + 1 CT + 0 TC = 3
0 GT + 1 TG + 1 CA + 0 AC = 2
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7302679|gb|AE003801.1|AE003801 Drosophila melanogaster genomic scaffold 142000013386047 section 11 of 52, complete sequence
Position Repeat Coverage Repeat
3822 TG * 12 23/24 TG TG TG TG TG TG TG TG TG TG AG TG
5370 CA * 14 26/28 CA CA CA TT CA CA CA CA CA CA CA CA CA CA
11440 AG * 31 56/62 AG AG AG AG AG AG AG AG AG AG AG AG AT AG AG AG AG AG AG AG AG AG AG AT AG GG AG CG AG GG AA
18475 AC * 10 18/20 AC AC AC AC AC AC AC AC TG AC
40697 TG * 14 26/28 TG TG TG TG TG TG TG TG TG TG TG TG TG AC
44578 GT * 16 29/32 GT GT GT GT GT GT CT GT GT GT GT CT GT GT GT GA
45736 CA * 10 18/20 CA CA CA CA CA CG CA CA CT CA
63063 GT * 11 20/22 GT AT GT GT GT GT GT GT GT TT GT
66569 TC * 15 27/30 TC GC TA TC TC TC TC TC TC TC TC TC TC TC TG
69768 CA * 11 20/22 CA CA CA CC CA CA CA CC CA CA CA
69792 CA * 11 20/22 CA CA CA CC CA CA CA CC CA CA CA
69990 CA * 10 18/20 CA TA CA CA CA CA CA CA CA CC
85025 TA * 11 20/22 TA TA TA TA TT TA TA TA CA TA TA
85446 GT * 10 18/20 GT GT GT GT GT GT GT AT GT GG
91506 CA * 11 21/22 CA CA CA CA CT CA CA CA CA CA CA
91880 AT * 17 31/34 AT AT AT AT AT AT AT AT AT AT AT AT AT AT TG AG AT
96451 TG * 11 20/22 TG TG TC TG TG TG TG TG TG TG TT
104514 GT * 12 22/24 GT GT GT AT GC GT GT GT GT GT GT GT
104591 CA * 15 27/30 CA CC CA CC CA CA CA CA CA CA CA CA CA CA TA
108269 AT * 14 26/28 AT AT AT AT AT GT TT AT AT AT AT AT AT AT
110248 AC * 12 22/24 AC AC AC AC AA AC AC AC CC AC AC AC
110328 CA * 15 27/30 CA CA CA CA CA CA CA CA CA CA CA CA CA CC AG
141308 GT * 11 21/22 GT GT GT GT GT GT GT GT GT GT GC
143879 AC * 12 22/24 AC AC CC AT AC AC AC AC AC AC AC AC
156880 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CG GA
176308 GT * 10 19/20 GT GT GT GT GT GT GT GT GT GC
177216 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CG CA CA CT
190341 CA * 17 31/34 CA CA CA CA CA CA CA CA CA CA CA CA CA CA TA GA GA
198981 CA * 12 22/24 CA CA TA CA CA CA AA CA CA CA CA CA
211519 TA * 10 18/20 TA TT TA AA TA TA TA TA TA TA
214560 AT * 21 38/42 AT AT AT AT AT AT AT AT AT AC AT AT AT AT AT AT TT AT AT AT CC
217304 CA * 11 20/22 CA CA CA CA CA CA CA TA CA CG CA
231796 AT * 16 29/32 AT AT AT AT AT AT AT AT AT AT AT AT AT AG TT GT
234762 CA * 15 28/30 CA CA CA CA CA CA CA CA CA CT CA CA CA CA GA
236725 CA * 15 27/30 CA GG CA CA CA CA CA CA CA CA CA CA CA CA GA
246468 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AT GA
246626 TA * 11 20/22 TA TA TA TA TA TA TA TA GA TA TC
248538 GA * 10 18/20 GA TA GA GA GA GA GA GA GA GT
249878 AT * 10 18/20 AT AT AT AC AT AT TT AT AT AT
252094 AG * 18 34/36 AG AG AG AG AG AG AG AG AG AG GG AG AG AG AG GG AG AG
253996 GT * 11 20/22 GT GA GT AT GT GT GT GT GT GT GT
255876 TG * 11 20/22 TG TG TG TG TG TG TG TG TG CG TC
258658 AT * 12 22/24 AT AT GT GT AT AT AT AT AT AT AT AT
270521 AC * 10 19/20 AC AC AC AC GC AC AC AC AC AC
271148 TG * 10 19/20 TG TG TG TG TG TG TG TG GG TG
271266 AG * 10 18/20 AG AG AG AG AA AG AG AG AG GG
-----------------------------------------------------------------------------------------
Total sequence length......................... 272650
Total number of repeats detected.............. 46
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 3 1 1 4 10 5 6 0 0 0 0
15 to 19 2 0 1 0 0 5 0 1 1 0 0 0
20 to 24 1 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 1 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 7 3 3 1 4 15 5 7 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
7 AT + 3 TA = 10
3 AG + 1 GA + 0 CT + 1 TC = 5
7 GT + 5 TG + 15 CA + 4 AC = 31
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7302632|gb|AE003800.1|AE003800 Drosophila melanogaster genomic scaffold 142000013386047 section 10 of 52, complete sequence
Position Repeat Coverage Repeat
3687 GT * 10 18/20 GT GT GT GT GT GT GT GT TT GG
12082 TG * 10 18/20 TG CG TG TG TG TG TG TA TG TG
12479 GT * 11 20/22 GT GT GT GT GT GT GT GT GT TT GA
14390 AT * 12 23/24 AT AA AT AT AT AT AT AT AT AT AT AT
17106 CA * 15 28/30 CA CA TA CA CG CA CA CA CA CA CA CA CA CA CA
24229 CA * 16 29/32 CA CA CA CA CA CA CA CA CA CA CA GA CA CA CA GG
31397 TG * 10 18/20 TG TG TG TG TG TG TA TG TA TG
38220 GT * 12 22/24 GT GT GT GT GT GG TT GT GT GT GT GT
61024 TA * 11 20/22 TA TA CA TA TA TA AA TA TA TA TA
71634 GT * 11 20/22 GT GT GT GT GT GT GT GT GT TG GT
104215 TG * 12 22/24 TG TA TA TG TG TG TG TG TG TG TG TG
107402 AC * 11 20/22 AC AC AC AC TC GC AC AC AC AC AC
108064 TC * 10 18/20 TC GC TC TC TC TC TC TC TT TC
110877 GA * 12 22/24 GA GA GA GA GA GA GA GA AC GA GA GA
116536 AC * 10 18/20 AC AC CC AC AC AC AC AC AC AG
137745 CA * 10 18/20 CA CC CC CA CA CA CA CA CA CA
156664 GT * 11 20/22 GT GT GG GC GT GT GT GT GT GT GT
163316 TA * 11 20/22 TA TG TA TA TA TA TA CA TA TA TA
215601 TA * 11 21/22 TA TG TA TA TA TA TA TA TA TA TA
236938 CA * 11 20/22 CA CA CA CA CA CA CA TA CA CA AA
262017 AT * 15 27/30 AT AT AT AC AT AT AT AT AT AT AT AT AT GT GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 267271
Total number of repeats detected.............. 21
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 3 0 1 2 2 3 5 1 0 0 0
15 to 19 1 0 0 0 0 2 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 3 0 1 2 4 3 5 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 3 TA = 5
0 AG + 1 GA + 0 CT + 1 TC = 2
5 GT + 3 TG + 4 CA + 2 AC = 14
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7302581|gb|AE003799.1|AE003799 Drosophila melanogaster genomic scaffold 142000013386047 section 9 of 52, complete sequence
Position Repeat Coverage Repeat
29204 CA * 11 20/22 CA CC CA CA CA CA GA CA CA CA CA
44875 AT * 10 18/20 AT TT AT AT AT AT AT AT AT AA
45585 CT * 10 18/20 CT CT CT CA CT CT CT CT CT CG
81002 AT * 16 29/32 AT AT AT AT TT TT AT AT AT AT AT AT AT AT AT AG
89281 AC * 12 22/24 AC AA AC AC AC AC AC AC AC AC AC AG
114678 GA * 14 26/28 GA GA GA GA GA TA GA GA GA GC GA GA GA GA
114732 TG * 10 18/20 TG TG TG TG TG TG TG TT AG TG
119329 AC * 10 18/20 AC AC AC TC AC GC AC AC AC AC
127673 TG * 11 20/22 TG TG TG TG TG TG TG TG TT TC TG
128692 TG * 11 21/22 TG TG TG TG TG TG TG TA TG TG TG
134572 AG * 10 18/20 AG AG AG AG AG AG AG AG AG CT
141253 AG * 10 18/20 AG AG AG AG AG AG AG AG AG CT
142523 AC * 13 24/26 AC GC AC CC AC AC AC AC AC AC AC AC AC
147132 TG * 12 23/24 TG TA TG TG TG TG TG TG TG TG TG TG
148965 CA * 11 20/22 CA CA GA CA CA CA CA CA CA CA AA
162586 TA * 10 18/20 TA TG TA TA TA TA TA TA CA TA
163509 GT * 10 18/20 GT TT GT GT GT GC GT GT GT GT
170609 TA * 11 20/22 TA CA TA TA TA TA TA TA TA AA TA
188114 CA * 10 18/20 CA CA CA CA CA CG CA CC CA CA
208850 GT * 11 20/22 GT CG GT GT GT GT GT GT GT GT GT
216554 TG * 12 22/24 TG TG TG CG TC TG TG TG TG TG TG TG
245595 TA * 10 18/20 TA TA TA AA TA TA TA AA TA TA
251689 CT * 26 47/52 CT CT GT CT CC CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT TT CT CT TT CT CG
261232 TG * 12 22/24 TG TG CT TG TG TG TG TG TG TG TG TG
261921 CT * 11 20/22 CT CT CT CT CT CT TT CT CG CT CT
274382 CT * 10 18/20 CT CT AT CT CT CT CT CT TT CT
-----------------------------------------------------------------------------------------
Total sequence length......................... 277015
Total number of repeats detected.............. 26
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 3 2 1 3 3 6 2 0 3 0 0
15 to 19 1 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 1 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 3 2 1 3 3 6 2 0 4 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 3 TA = 5
2 AG + 1 GA + 4 CT + 0 TC = 7
2 GT + 6 TG + 3 CA + 3 AC = 14
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7302535|gb|AE003798.1|AE003798 Drosophila melanogaster genomic scaffold 142000013386047 section 8 of 52, complete sequence
Position Repeat Coverage Repeat
11248 CA * 13 24/26 CA AA CA CA CG CA CA CA CA CA CA CA CA
11511 GT * 10 18/20 GT GT GT GT GT GT GT GT GT TG
12743 AC * 13 24/26 AC AC AC AC AC AC AC AC AC GC AC AC TC
16436 TG * 10 18/20 TG TA TG TG TG TT TG TG TG TG
30610 TA * 10 18/20 TA TT TA TA TA TA TG TA TA TA
84516 CT * 12 22/24 CT CT CT CT CT CT CT GT CT CT GT CT
87844 CT * 12 22/24 CT CT CC CT CT CT CT CT CT CT CT GT
88073 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA TG CA CA
90118 GA * 13 24/26 GA CA GA GA GA AA GA GA GA GA GA GA GA
96012 AT * 10 18/20 AT AT AT AT AC AT AT AT AT AC
105037 AT * 10 18/20 AT AG AT AT AT AT AC AT AT AT
110506 GT * 12 22/24 GT GT GT GA GT GT GA GT GT GT GT GT
115841 AT * 10 18/20 AT AT AT AT AT AT AT AT TT AA
116573 TA * 11 20/22 TA TA TA TA TA TA TA TA AT TA TA
123738 TG * 11 20/22 TG TG TG TG TG CG TG CG TG TG TG
125740 TA * 10 18/20 TA TT TA TA TG TA TA TA TA TA
127508 GT * 12 22/24 GT GT GT TA GT GT GT GT GT GT GT GT
137062 TA * 10 18/20 TA TG TA TA TA TA TA TA TG TA
137391 AT * 10 19/20 AT AT AT AT GT AT AT AT AT AT
137733 TC * 10 18/20 TC TC TC AC TC TC TC TC CC TC
137988 TA * 15 28/30 TA TA TG TA TA TA TG TA TA TA TA TA TA TA TA
142624 AG * 16 29/32 AG AG AG AG AG AG AG AG AG AG AG AT AG AG AG GA
149303 TG * 15 27/30 TG GG TG TG TG TG TG TG TG TG TG TG TG TG GC
153244 CA * 11 20/22 CA CA CA CA CA CA CA CA AA CA GA
155251 GT * 21 38/42 GT GT GT GT GT GT GT GT TT GT GT GT GT GT GT GT GT GT GT GC AA
158727 CA * 12 22/24 CA CA CA CA CA CA CA CA CA GA TA CA
170077 AC * 11 20/22 AC GC AA AC AC AC AC AC AC AC AC
172637 CT * 11 20/22 CT CT CT CT CT CT CT CT CT CG GT
173564 TG * 10 19/20 TG TG TG TG TG TG TG TG TG TA
203549 GA * 10 18/20 GA GA GA GA GA GA GA GT AA GA
215128 TA * 10 18/20 TA TA TA TA TA TG TA CA TA TA
236419 CA * 17 31/34 CA CA CA CA CA CA CA CA CA TA CA CA CA CA CA CG CT
240072 GT * 12 22/24 GT GT GT GT GT GT GT GT AT TT GT GT
240851 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TG CT
251893 GT * 10 18/20 GT GT GT AT GT GT GT GG GT GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 261090
Total number of repeats detected.............. 35
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 5 0 2 2 4 4 5 1 3 0 0
15 to 19 0 1 1 0 0 1 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 1 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 6 1 2 2 5 5 6 1 3 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 6 TA = 10
1 AG + 2 GA + 3 CT + 1 TC = 7
6 GT + 5 TG + 5 CA + 2 AC = 18
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7302512|gb|AE003797.1|AE003797 Drosophila melanogaster genomic scaffold 142000013386047 section 7 of 52, complete sequence
Position Repeat Coverage Repeat
1031 TA * 10 18/20 TA TA TA TA TG TA TA TA TA TG
13875 AG * 10 18/20 AG AG AA AG AG AG AG AG CG AG
16093 AT * 13 24/26 AT AT AT AT AT AT AT AT AT AT AT GC AT
16466 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TT TG TT
34316 CT * 11 20/22 CT CT TT CT CT CT CG CT CT CT CT
36378 AG * 10 18/20 AG CG GG AG AG AG AG AG AG AG
65994 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AT GC AC
67606 TG * 10 18/20 TG TG TG TG TG TG TG TG TG CC
69917 AC * 15 27/30 AC AA AC AC AC AC AC AC AC AC AC AC AC AA GC
76239 TA * 17 31/34 TA TA TA TA TA TT TA TA TA TA TA TA TA TG TA TG TA
76772 AC * 10 18/20 AC TG AC AC AC AC AC AC AC AC
77631 CA * 10 19/20 CA CA CA CA CA CA CA CA CA CC
81489 AT * 10 18/20 AT AC AA AT AT AT AT AT AT AT
88096 TG * 10 18/20 TG TG TG TG TC TG TG TG GG TG
95133 AT * 11 20/22 AT AT AT TT AC AT AT AT AT AT AT
96097 CT * 13 24/26 CT CT CT CT CT CT CT CT CT CT CT GT CC
98117 GT * 11 20/22 GT GT GT GT GT GT GT GT GT GT AA
100472 TA * 13 24/26 TA TA AA TA TA TA TA TA TA TA TA TA CA
103707 TG * 12 22/24 TG TG TG TG CT TG TG TG TG TG TG TG
105709 AC * 10 19/20 AC AC AC AC AC AC AT AC AC AC
106804 AT * 10 18/20 AT AG AT AT AT AG AT AT AT AT
109406 GT * 11 20/22 GT GT GT GC TT GT GT GT GT GT GT
117033 AC * 10 18/20 AC AC CC AT AC AC AC AC AC AC
119948 TG * 13 24/26 TG TG CT TG TG TG TG TG TG TG TG TG TG
122054 CA * 13 25/26 CA CA CA CA CA CA CA CA CA CA CA CA TA
122219 TG * 13 24/26 TG TG TG TG TG TG TG TG TA TG TG TG TT
122386 TG * 12 22/24 TG TG TA TG TG TG TG TG TG TG TC TG
124289 TG * 10 18/20 TG GA TG TG TG TG TG TG TG TG
127398 GT * 16 29/32 GT GT GT CT GT GT GT GT GT GT GT GT AT GT GT CT
132105 TA * 12 22/24 TA TA TA TA CA TA TA TA TA TA TA TT
135685 GT * 35 63/70 GT GT AT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GC CT GG AA GT GA
140997 GT * 16 29/32 GT GT GT GT GT GT GT GT GT GC GG GT GT GT GG GT
141438 AC * 12 22/24 AC AC AA AC AC AC AC AC AC GC AC AC
147137 GT * 15 28/30 GT GT AT GT GT GT GT GT CT GT GT GT GT GT GT
147578 TA * 15 27/30 TA TA TA TA TA TA AA TA TA TA TA TA TA TA GG
150338 CA * 10 18/20 CA CA CA CA CT CA CA CA CA CT
155754 AT * 16 29/32 AT AT AT AC AT AT AT AC AT AT AT AT AT AT AT TT
156056 TG * 10 18/20 TG TC GG TG TG TG TG TG TG TG
157231 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CG CT CA
157682 AT * 18 33/36 AT AC AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT GT
167402 TC * 10 19/20 TC TC TC TC TC TC TC TC TC TG
170475 TA * 10 18/20 TA TA TA TG TA TA TG TA TA TA
186364 TG * 14 26/28 TG TG TG TG TG TG TG TG TG TG TG TG TG GC
190399 CA * 15 28/30 CA CA CA CA CA CA CA CA CA CA CA CA CA CG TA
191305 TA * 10 18/20 TA TA TA CA TA TA TA CA TA TA
195027 AC * 15 27/30 AC AC AC GC AC AC AC AC AC AC AG AC AC AC AT
196924 AC * 11 20/22 AC AC AC AC TT AC AC AC AC AC AC
219042 TA * 11 20/22 TA TG TA TG TA TA TA TA TA TA TA
223988 AT * 12 22/24 AT AT AT CC AT AT AT AT AT AT AT AT
226675 TG * 13 25/26 TG TG GG TG TG TG TG TG TG TG TG TG TG
226916 TG * 11 20/22 TG TA TG TG TG TG TG TG TG TT TG
242198 TA * 10 18/20 TA TA TA TA TG TA TG TA TA TA
255002 CA * 12 22/24 CA AA CA TA CA CA CA CA CA CA CA CA
283679 CA * 14 26/28 CA CA CA CA CA CA CA CA CG CA CA CA CA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 287859
Total number of repeats detected.............. 54
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 7 2 0 6 6 12 2 1 2 0 0
15 to 19 2 2 0 0 2 1 0 3 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 1 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 7 9 2 0 8 7 12 6 1 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
7 AT + 9 TA = 16
2 AG + 0 GA + 2 CT + 1 TC = 5
6 GT + 12 TG + 7 CA + 8 AC = 33
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7302472|gb|AE003796.1|AE003796 Drosophila melanogaster genomic scaffold 142000013386047 section 6 of 52, complete sequence
Position Repeat Coverage Repeat
8 AT * 12 22/24 AT TA AT AT AT AT AT AT AT AT AT AT
27720 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT CT GG
29192 TA * 12 22/24 TA TA TG TA TA TA TA TA TA TA TA TT
48441 CA * 11 20/22 CA CA CA CA CA CA CA CA CA GA GA
49015 AT * 10 18/20 AT AC AT AT AC AT AT AT AT AT
51677 AG * 10 18/20 AG CG AG AG AG AG AG AG AG AT
89733 TG * 10 19/20 TG TG TG TT TG TG TG TG TG TG
90212 CT * 16 29/32 CT CT CT CT CT TC CT CT CT CT CT CT CT CT CT AT
92209 CA * 16 30/32 CA CA CA CA CA CA CA CA CA CA CA CT CA CA AA CA
94563 AT * 10 18/20 AT CT AT AT AT AT GT AT AT AT
101417 GT * 15 27/30 GT GT GT GT GT GT GT GT GT GT GT GC TT GT GC
107272 TA * 23 43/46 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA CA GA TA TT
153600 AG * 11 20/22 AG AG AG AG AG AG AG AG AG AG CA
177112 GT * 10 18/20 GT AT GT GT GT GT GT GT GC GT
182898 GT * 11 20/22 GT GT GT GT GC GT GC GT GT GT GT
198224 TG * 10 18/20 TG TG TG TG TG TG TG TG GG GG
199961 GA * 11 20/22 GA AT GA GA GA GA GA GA GA GA GA
203435 TG * 10 18/20 TG TG TG TG AG TG TG TG TG CG
211438 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GT GT GG GC
212024 AT * 11 20/22 AT AT AT AC AT AT AT AT AA AT AT
213300 AT * 15 27/30 AT AT AT AC AT AT AT AT GT AT AT AT AT AT CT
216997 GT * 10 19/20 GT GT GT GT GT GT GT GT GT GG
226337 TG * 11 20/22 TG TG TG TA TG TG TG TG TG CG TG
230416 AT * 10 19/20 AT AT AT AT AT AC AT AT AT AT
236364 GT * 10 18/20 GT GT CT GT GT AT GT GT GT GT
237537 TG * 10 18/20 TG TG TA TG TG TG CG TG TG TG
242929 CA * 11 20/22 CA CA TA CA CA CA CA CA CA CA TA
246642 GA * 10 18/20 GA TT GA GA GA GA GA GA GA GA
254369 CA * 13 24/26 CA CA CA AG CA CA CA CA CA CA CA CA CA
259961 CA * 11 21/22 CA CA CA CA CA CA CA CA CA CT CA
263565 AC * 13 24/26 AC CA AC AC AC AC AC AC AC AC AC AC AC
-----------------------------------------------------------------------------------------
Total sequence length......................... 268420
Total number of repeats detected.............. 31
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 1 2 2 1 4 5 6 0 0 0 0
15 to 19 1 0 0 0 0 1 0 1 0 1 0 0
20 to 24 0 1 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 6 2 2 2 1 5 5 7 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
6 AT + 2 TA = 8
2 AG + 2 GA + 1 CT + 0 TC = 5
7 GT + 5 TG + 5 CA + 1 AC = 18
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7302434|gb|AE003795.1|AE003795 Drosophila melanogaster genomic scaffold 142000013386047 section 5 of 52, complete sequence
Position Repeat Coverage Repeat
3134 AT * 10 18/20 AT AA AT AT AT AC AT AT AT AT
16803 AC * 13 24/26 AC GC AC AC AC AC AC AC AC AC AC AC GC
22087 AT * 10 18/20 AT TT AT AT AT AT GT AT AT AT
22951 GT * 11 20/22 GT GT GT GT GT GT GT GT GT GT AG
32006 TG * 11 20/22 TG TG TG TG TG CG TG TG TC TG TG
34936 TA * 27 49/54 TA TA TT TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TG TA TG TA TA TA TA TG
52196 TC * 11 20/22 TC TC TC TT TT TC TC TC TC TC TC
56533 GT * 10 19/20 GT GT GT AT GT GT GT GT GT GT
59960 AT * 10 18/20 AT AT AT AT TT AT GT AT AT AT
77127 GT * 10 18/20 GT GT AT GC GT GT GT GT GT GT
78081 TG * 12 22/24 TG TG TG TG TC TG TG TG TG TG TA TG
81444 AT * 12 23/24 AT AT AT AT AT AT AT AT AT GT AT AT
106297 AT * 10 18/20 AT AT AT AT AT AT AT CT GT AT
107654 GT * 12 22/24 GT GT GT GT GT GT GT GT GC GT GT GG
108802 CA * 11 20/22 CA CA AA CA CA CA CA CA CA TA CA
124587 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TA TT TG
133265 CA * 10 18/20 CA AA CA CC CA CA CA CA CA CA
153313 AC * 11 20/22 AC AC AC AC AC AC AC TT AC AC AC
174058 AC * 11 20/22 AC AC AC AC AC AC AC AG AA AC AC
175090 TC * 10 19/20 TC TC AC TC TC TC TC TC TC TC
181014 AT * 16 30/32 AT AT TT AT AT AT AA AT AT AT AT AT AT AT AT AT
181556 CA * 13 24/26 CA CA CA CA CA CA AC CA CA CA CA CA CA
183132 CA * 13 25/26 CA CA CA CA CA CA GA CA CA CA CA CA CA
199557 CA * 12 22/24 CA CA CC CA CA CA CA CA CA CA CT CA
202363 TA * 12 22/24 TA TG TA TA TA TA TA TA TA TA TA TC
233023 AT * 10 18/20 AT AT AT AT AT AT AT AT AA TT
239191 CA * 10 19/20 CA CA CA CA CA GA CA CA CA CA
244031 AC * 17 31/34 AC AC AC AC AC AC AC AA AC AC AC AC AA AC AC AC AT
254980 AT * 10 18/20 AT AT AA TT AT AT AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 260400
Total number of repeats detected.............. 29
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 7 1 0 0 3 6 3 4 2 0 0 0
15 to 19 1 0 0 0 1 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 1 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 8 2 0 0 4 6 3 4 2 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
8 AT + 2 TA = 10
0 AG + 0 GA + 0 CT + 2 TC = 2
4 GT + 3 TG + 6 CA + 4 AC = 17
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7302424|gb|AE003794.1|AE003794 Drosophila melanogaster genomic scaffold 142000013386047 section 4 of 52, complete sequence
Position Repeat Coverage Repeat
109297 CA * 10 19/20 CA CA CA CA CA CA CA CA CA CT
136367 AC * 13 24/26 AC AC AC AC AC AC AC AA AC CC AC AC AC
137250 TA * 10 18/20 TA TA TA TA TA TA TA AC TA TA
160048 TA * 12 22/24 TA TA TA TA TA TA CA TA TA TA TG TA
162026 GT * 11 20/22 GT GT GT GT GT GT GT GT AA GT GT
174528 AC * 18 33/36 AC AC AC AC AC AC AC AC AC AC AC TC CC AC AC AT AC AC
206415 AC * 22 40/44 AC AC AC GC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC TG GC AC
218613 CA * 10 19/20 CA CA CA CA TA CA CA CA CA CA
245416 GA * 11 20/22 GA GG CA GA GA GA GA GA GA GA GA
246161 AG * 10 18/20 AG AG AG AG AG AG AG AG AG CT
-----------------------------------------------------------------------------------------
Total sequence length......................... 261083
Total number of repeats detected.............. 10
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 2 1 1 1 2 0 1 0 0 0 0
15 to 19 0 0 0 0 1 0 0 0 0 0 0 0
20 to 24 0 0 0 0 1 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 2 1 1 3 2 0 1 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 2 TA = 2
1 AG + 1 GA + 0 CT + 0 TC = 2
1 GT + 0 TG + 2 CA + 3 AC = 6
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7302408|gb|AE003793.1|AE003793 Drosophila melanogaster genomic scaffold 142000013386047 section 3 of 52, complete sequence
Position Repeat Coverage Repeat
29884 AC * 10 18/20 AC AC AC GC AC AC AC AC CC AC
75602 CA * 12 22/24 CA CA CA CA CA CA CA CT CG CA CA CA
80642 AC * 12 22/24 AC GC GC AC AC AC AC AC AC AC AC AC
82541 CA * 11 21/22 CA CT CA CA CA CA CA CA CA CA CA
153387 GT * 13 24/26 GT GT GA GT GT GT GT GT GT GT GT GT GC
198840 GT * 11 20/22 GT GT GT GT GT GT GT GT TT GT GC
214451 AT * 11 20/22 AT AC AT AT AT AT AT AT AT AT CT
251778 GT * 11 20/22 GT GT GT GC TT GT GT GT GT GT GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 263693
Total number of repeats detected.............. 8
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 0 0 0 2 2 0 3 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 0 0 0 2 2 0 3 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 0 TA = 1
0 AG + 0 GA + 0 CT + 0 TC = 0
3 GT + 0 TG + 2 CA + 2 AC = 7
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7302377|gb|AE003792.1|AE003792 Drosophila melanogaster genomic scaffold 142000013386047 section 2 of 52, complete sequence
Position Repeat Coverage Repeat
310 TG * 10 18/20 TG TG CG TG TG TG TG TG TG AG
5359 GT * 10 18/20 GT GC GT GT GT GT TT GT GT GT
8483 AG * 13 24/26 AG AT AG AG TG AG AG AG AG AG AG AG AG
8510 GA * 13 24/26 GA GA GA GA GA GA GA GA AA GG GA GA GA
8687 CA * 12 22/24 CA CA CA CA CA CA CA CA AA CA CA CT
13727 CA * 12 23/24 CA CA CA CA CA CA CA CA CA CA CA AA
20359 CA * 11 20/22 CA CA CA CA CG CA CA CC CA CA CA
24752 CT * 16 30/32 CT CC CT CT CT CT CT CT CT CT CT CT CT CC CT CT
27110 TG * 15 27/30 TG TG AG TG TG TG TG TG TG TG TG TG TG TG CC
27486 CA * 18 34/36 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA TA TA CA
30323 AT * 10 18/20 AT AT AT AT AT GT AT GT AT AT
33381 AC * 11 20/22 AC AC TC AC AC AC AC AC AC AC AA
35360 TG * 13 25/26 TG TG TG TG TG TG TG TG TG TG AG TG TG
36043 GT * 14 26/28 GT GT GT GT GT GT GT GT GT GT GT GA GT TT
37982 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GT GT GA GG
53828 TA * 12 22/24 TA TA TA TA CA TA TA TA TA TG TA TA
55423 GT * 13 25/26 GT GT GT TT GT GT GT GT GT GT GT GT GT
56581 AC * 10 18/20 AC AA AC AC AC GC AC AC AC AC
59599 AC * 12 22/24 AC AG AC AC AC AC GC AC AC AC AC AC
61092 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG CG TT
64364 GA * 11 20/22 GA GC GA GA GA CA GA GA GA GA GA
65456 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TG TG TG TG CT GG
67405 AC * 10 18/20 AC AA AC AC AC AC AC AC AC TC
70310 GT * 12 22/24 GT GT GT GC TT GT GT GT GT GT GT GT
70440 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA AA TA
72060 CA * 13 24/26 CA TA CA CA CA CA CA CA CA CA CA CA GA
76018 TG * 10 18/20 TG AG TG TG TG TG TG TG TG CG
76973 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TG AA
80096 GT * 11 20/22 GT CT GT GT GT GT GT GT GT GT GC
80411 CT * 12 22/24 CT CT CT CT CT CT CT CT CT AT CC CT
82974 AT * 12 22/24 AT AT AC AC AT AT AT AT AT AT AT AT
90400 AG * 10 18/20 AG AG AG AG AC AG AG AG AT AG
92796 TG * 11 20/22 TG AG TG TG TG TG TG TG TG AG TG
92994 GT * 12 22/24 GT GC GA GT GT GT GT GT GT GT GT GT
102034 GT * 10 18/20 GT GT GT GT GT GT GT GT GG GG
107819 TA * 11 21/22 TA CA TA TA TA TA TA TA TA TA TA
115559 GT * 11 20/22 GT GT GT GC GT GT GT GT GT GT GG
116662 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA CT GA
121775 AC * 16 29/32 AC AC AC AC AC AC AC CC AC AC AC AC AC AC AT AG
122937 AT * 14 26/28 AT AT AT GT AT AT AT AT AT AT AT AT GT AT
137344 AG * 14 26/28 AG CA AG AG AG AG AG AG AG AG AG AG AG AG
137628 TG * 16 29/32 TG TG TG TG TC TG TG TG TG TG TG TG TG TG TG CT
153699 CA * 11 21/22 CA CA CA CA CA CA CA TA CA CA CA
154015 CA * 10 18/20 CA CA CA CA CA CA CA CG CA CT
169729 AC * 12 22/24 AC GC AC AC AC AC AC AC TC AC AC AC
177767 CA * 11 20/22 CA AA CA CA CT CA CA CA CA CA CA
179949 TA * 11 20/22 TA TA TC TA TA TA TG TA TA TA TA
191856 AG * 10 18/20 AG AG CG AG AC AG AG AG AG AG
-----------------------------------------------------------------------------------------
Total sequence length......................... 261900
Total number of repeats detected.............. 48
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 3 4 2 5 9 6 9 0 1 0 0
15 to 19 0 0 0 0 1 1 3 0 0 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 3 4 2 6 10 9 9 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 3 TA = 6
4 AG + 2 GA + 2 CT + 0 TC = 8
9 GT + 9 TG + 10 CA + 6 AC = 34
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7302331|gb|AE003791.1|AE003791 Drosophila melanogaster genomic scaffold 142000013386047 section 1 of 52, complete sequence
Position Repeat Coverage Repeat
9523 AG * 11 20/22 AG AG AG TG TG AG AG AG AG AG AG
20673 CA * 17 31/34 CA CA TA CA CA CA CT CA CA CA CA CA CA CA CA CA AA
24543 TG * 10 18/20 TG TG TG TG CG TG TG TG CG TG
24830 TG * 11 20/22 TG TG TG TG GG TG TG TG TT TG TG
32167 TG * 12 22/24 TG CG TG TG TG TG TG TG TG TG TG AG
56435 AG * 11 20/22 AG AG AG CG AG AG AG AG AG AG AT
60678 TG * 17 31/34 TG CG TC TG TG TG TG TG TG TG TG TG TG TG TG TA TG
66054 GT * 12 22/24 GT GT GG GT GA GT GT GT GT GT GT GT
69968 CA * 11 20/22 CA CA CA CA CA CA CA CA CA GA GA
70858 TG * 10 18/20 TG TG TG AG TG TG TG TG TT TG
72894 CA * 11 21/22 CA CA CA CA CA CA CA CA CA TA CA
75017 GT * 13 24/26 GT GT GC GT GT GT GT GT GT GT GT GA GT
78830 AC * 12 22/24 AC AC GC AC AC AC AC AC AC AC AT AC
96964 GT * 11 20/22 GT GT GT GT GT GT GT GT GT TT GA
133014 AC * 13 24/26 AC AA AC GC AC AC AC AC AC AC AC AC AC
133691 TA * 11 20/22 TA TA TA TA TA TA TA TG TA TA TG
162528 TG * 11 20/22 TG TG TG TG TG TG TT TG TG TG TC
169400 AT * 19 35/38 AT AT AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT GG
177427 AC * 12 22/24 AC AC GC AC AC AC AC AC AC AC AT AC
183079 AT * 13 24/26 AT AT AT AT AT AT AG AT AG AT AT AT AT
183460 TA * 14 26/28 TA TA TA TA TA TA TA TT TA TA TA TA TA TT
187615 TG * 18 33/36 TG CG TG AG TG TG TG TG TG TG TG TG TG TG TG TG TG TT
188736 TG * 12 22/24 TG TG AG TG TG AG TG TG TG TG TG TG
189026 TG * 12 22/24 TG CG TG TG TG TG TG TG TG TG TG TC
199688 AT * 11 20/22 AT AT AT AT AT AT GT AC AT AT AT
211634 AC * 12 22/24 AC AC AC AC AC AC AC AC AT AG AC AC
217090 AT * 12 22/24 AT AT GC AT AT AT AT AT AT AT AT AT
249343 AT * 12 22/24 AT AT AT AT AC AT GT AT AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 260580
Total number of repeats detected.............. 28
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 2 2 0 4 2 7 3 0 0 0 0
15 to 19 1 0 0 0 0 1 2 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 2 2 0 4 3 9 3 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 2 TA = 7
2 AG + 0 GA + 0 CT + 0 TC = 2
3 GT + 9 TG + 3 CA + 4 AC = 19
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7288937|gb|AE003082.1|AE003082 Drosophila melanogaster genomic scaffold 142000013385249, complete sequence
Position Repeat Coverage Repeat
10482 AC * 10 18/20 AC AC AC AC AC AC AC AC AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 20167
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 0 0 0 1 0 0 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 0 0 0 1 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 0 TA = 0
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 0 TG + 0 CA + 1 AC = 1
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7316096|gb|AE002575.1|AE002575 Drosophila melanogaster genomic scaffold 142000013386038, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7291893|gb|AE003466.1|AE003466 Drosophila melanogaster genomic scaffold 142000013386038 section 15 of 15, complete sequence
Position Repeat Coverage Repeat
65672 AT * 20 36/40 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA AN NN
65746 AT * 11 21/22 AT AT AT AT AT CT AT AT AT AT AT
94898 CT * 13 25/26 CT CT CC CT CT CT CT CT CT CT CT CT CT
96159 GT * 11 20/22 GT GT GT AT GT GT GG GT GT GT GT
123383 AT * 10 18/20 AT AT AT AT AT AA AT AC AT AT
255338 AT * 13 24/26 AT AT AA AT AT AT AT AT GT AT AT AT AT
281729 TA * 12 22/24 TA TA TA TA TA TA AC TA TA TA TA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 283099
Total number of repeats detected.............. 7
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 1 0 0 0 0 0 1 0 1 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 1 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 1 0 0 0 0 0 1 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 1 TA = 5
0 AG + 0 GA + 1 CT + 0 TC = 1
1 GT + 0 TG + 0 CA + 0 AC = 1
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7291836|gb|AE003465.1|AE003465 Drosophila melanogaster genomic scaffold 142000013386038 section 14 of 15, complete sequence
Position Repeat Coverage Repeat
25135 CA * 10 19/20 CA AA CA CA CA CA CA CA CA CA
27272 TG * 10 18/20 TG TG TC TG TG TG TG TG GG TG
28754 AG * 18 33/36 AG AA AG AA AG AG AG AG AG AG AG AG AG AG AG AG AG GG
43442 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AG GC AC AC
44674 CA * 10 18/20 CA CA CA CA CA CA GA CG CA CA
47418 GT * 10 18/20 GT GT GT GT GT GC GT AT GT GT
50699 TC * 10 18/20 TC GC TC TC TC TC TC TC TC TT
55017 AC * 11 20/22 AC AC AC AC AC AC AC TT AC AC AC
60093 AT * 15 28/30 AT AT AT AT AT AT AT AT AT AT AT AT AT AT GC
79410 AT * 12 22/24 AT AT AT AT AT AT AT AT AT GT AT AC
94397 AT * 12 22/24 AT AT AT AT AT AT AT AT AA AT TT AT
98867 TA * 13 24/26 TA GA TA TA TG TA TA TA TA TA TA TA TA
118555 TC * 12 23/24 TC TC TC TC TC TT TC TC TC TC TC TC
122802 GT * 10 18/20 GT GT GT GT GT GT GT GT TT GA
138578 CT * 11 20/22 CT CT CT CT CT CT CT CT TA CT CT
143463 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AA AC AA
189160 AT * 11 20/22 AT AT TT AT AT AT AG AT AT AT AT
190659 GT * 10 18/20 GT GT GT GT CT GT GT GT GT TT
201003 TG * 10 18/20 TG TG TG TG TG TG CG TG TG TC
284930 TA * 18 33/36 TA TA TA TA TA TA TA AA TA TA TA TA TA TA TA TA TG TT
312090 TG * 12 22/24 TG TA TG TG TG TG TG TG CG TG TG TG
319974 CA * 10 18/20 CA CA CA CA CA CA CA CA TA GA
-----------------------------------------------------------------------------------------
Total sequence length......................... 328500
Total number of repeats detected.............. 22
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 1 0 0 3 3 3 3 2 1 0 0
15 to 19 1 1 1 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 2 1 0 3 3 3 3 2 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 2 TA = 6
1 AG + 0 GA + 1 CT + 2 TC = 4
3 GT + 3 TG + 3 CA + 3 AC = 12
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7291775|gb|AE003464.1|AE003464 Drosophila melanogaster genomic scaffold 142000013386038 section 13 of 15, complete sequence
Position Repeat Coverage Repeat
7666 CT * 11 20/22 CT TT CT CT CT CT CT CT CT CT GT
10685 CA * 10 18/20 CA CA CA CA CA CA CA CA CA TT
12274 AC * 11 20/22 AC GC AC AC AC AC AG AC AC AC AC
14906 TA * 13 24/26 TA AA TA TA TA TA TA TA TA TT TA TA TA
24616 GT * 12 22/24 GT GC GT GT GT GT GT GT GC GT GT GT
60140 GT * 13 24/26 GT GC AT GT GT GT GT GT GT GT GT GT GT
80789 TG * 16 29/32 TG TG TG TC TG TG TG TG TG TG AG TG TG TG TG GG
103516 AC * 15 27/30 AC AC AG AC AC AC AC AC AC AC GC AC AC AC GC
137712 CA * 11 20/22 CA TA CA CA CA CA CA CA CA CG CA
161765 AG * 21 38/42 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AT AG AG AC AG AA CG
163056 TG * 12 22/24 TG TT TG TG TG TG TG TG TG TG CG TG
164421 TG * 10 19/20 TG TG TG TG TG TG TG TG CG TG
177413 AT * 11 21/22 AT AG AT AT AT AT AT AT AT AT AT
178597 TC * 10 18/20 TC TA TA TC TC TC TC TC TC TC
179825 AC * 12 22/24 AC AC AC AC AT AC AC AC AT AC AC AC
179851 AC * 12 22/24 AC AC AC AC AC TC AC AC AC AC AC AT
210565 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TG GT
237301 AT * 12 22/24 AT AC GT AT AT AT AT AT AT AT AT AT
238617 AC * 12 22/24 AC AC AC AC AC CC AC AC AC AC AC AG
242635 TG * 11 20/22 TG TC TG TC TG TG TG TG TG TG TG
249607 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CA TC
257403 TA * 26 48/52 TA TA TA TA TA TC TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TG
258553 CA * 10 18/20 CA CA CA CA AG CA CA CA CA CA
266170 GT * 10 18/20 GT AC GT GT GT GT GT GT GT GT
267049 CA * 10 18/20 CA CA CA CT CA CA CA CA CT CA
297283 TA * 18 33/36 TA TA TA TG TA TA TA CA TA TA TA TA TA TA TA TA TA GA
-----------------------------------------------------------------------------------------
Total sequence length......................... 306848
Total number of repeats detected.............. 26
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 1 0 0 4 5 4 3 1 1 0 0
15 to 19 0 1 0 0 1 0 1 0 0 0 0 0
20 to 24 0 0 1 0 0 0 0 0 0 0 0 0
25 to 29 0 1 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 3 1 0 5 5 5 3 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 3 TA = 5
1 AG + 0 GA + 1 CT + 1 TC = 3
3 GT + 5 TG + 5 CA + 5 AC = 18
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7291737|gb|AE003463.1|AE003463 Drosophila melanogaster genomic scaffold 142000013386038 section 12 of 15, complete sequence
Position Repeat Coverage Repeat
54694 AT * 10 18/20 AT AT AC AT AT AC AT AT AT AT
62739 CA * 15 28/30 CA CA CA CT CG CA CA CA CA CA CA CA CA CA CA
135440 AT * 11 20/22 AT AT AT AG AT AT AT AT TT AT AT
135759 GA * 11 20/22 GA GA GA AA GA TA GA GA GA GA GA
136221 CA * 10 18/20 CA CA CA CA CA CA CA CA CA GC
140213 CA * 12 23/24 CA CA CA CA CA CA CA CA CG CA CA CA
148517 CA * 14 26/28 CA CA CA CA CA CA CA TA CA CA CA CT CA CA
151877 GA * 10 18/20 GA GC AA GA GA GA GA GA GA GA
167263 GT * 11 20/22 GT GT GT GT GC AT GT GT GT GT GT
198371 CA * 11 20/22 CA CA CA CA CA CA CT CT CA CA CA
202966 AC * 13 24/26 AC AG AC AC AC AC AC AC AC AC AC AC AT
204056 TG * 10 19/20 TG TG TG TG TG TG TG TG TG CG
215043 GT * 10 18/20 GT GT GT GT GT GT GT TT TT GT
215174 TG * 11 20/22 TG TG TG TG TG TG GG TG TG TG TT
215310 CA * 10 18/20 CA CA CA CG CA CA CA CA CA GA
222159 GT * 11 20/22 GT GT GT GT GT GT GT GT GT GA GC
225403 GT * 10 18/20 GT GT GT GT GT GT GG GT GT TT
225560 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CC CT
251905 TC * 16 29/32 TC CC TC TC TC TC TC TC TC TC TC TA TC TC TC TG
254305 CA * 12 22/24 CA CA CA CT CA TA CA CA CA CA CA CA
256377 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AT TC AC
276669 AT * 10 18/20 AT AT AT AT AT AA AT AC AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 299975
Total number of repeats detected.............. 22
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 0 0 2 2 7 2 4 0 0 0 0
15 to 19 0 0 0 0 0 1 0 0 1 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 0 0 2 2 8 2 4 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 0 TA = 3
0 AG + 2 GA + 0 CT + 1 TC = 3
4 GT + 2 TG + 8 CA + 2 AC = 16
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7291637|gb|AE003462.1|AE003462 Drosophila melanogaster genomic scaffold 142000013386038 section 11 of 15, complete sequence
Position Repeat Coverage Repeat
3912 AT * 10 18/20 AT AT AT AT AT AT AT AT TT TT
5465 AG * 12 22/24 AG AT TG AG AG AG AG AG AG AG AG AG
19048 CT * 22 40/44 CT CT CT CA CT CT CT CT CT CT CT CT CT CT CG CA CT CT CT CG CT CT
41733 AT * 11 20/22 AT AT AT AT AT AT AT GT AT AT AA
45525 TG * 18 34/36 TG TC TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG AG
50111 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA CA AT
51646 GT * 15 27/30 GT GT GT GT GT GT GT GT GT GT GT GA GT GC GG
53928 GT * 11 21/22 GT GT GT GT GT GT GT GT GT GT GG
60009 TA * 10 18/20 TA TA AG TA TA TA TA TA TA TA
84722 CA * 11 20/22 CA CA CA CA CA CA CG CA CA CA AA
87300 CA * 11 20/22 CA CC CA CA CA TA CA CA CA CA CA
96500 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CA TG
129567 TG * 11 21/22 TG CG TG TG TG TG TG TG TG TG TG
132784 AG * 21 38/42 AG AT AG AG AG AG AG AA AG AG AG AG AG AG AG AG AG TG AG AG AT
297579 TA * 16 29/32 TA TA TA TA TA TA TA TA TA CA TA TA TA TA TG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 300542
Total number of repeats detected.............. 15
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 1 1 0 0 4 1 1 0 0 0 0
15 to 19 0 1 0 0 0 0 1 1 0 0 0 0
20 to 24 0 0 1 0 0 0 0 0 0 1 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 2 2 0 0 4 2 2 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 2 TA = 4
2 AG + 0 GA + 1 CT + 0 TC = 3
2 GT + 2 TG + 4 CA + 0 AC = 8
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7291588|gb|AE003461.1|AE003461 Drosophila melanogaster genomic scaffold 142000013386038 section 10 of 15, complete sequence
Position Repeat Coverage Repeat
8989 TG * 12 22/24 TG TA TG TG TG TG TG TG TG TG TG TT
13965 AT * 17 31/34 AT AT TT AT AT AT AT AT AT AT AT AT AT GT AT TT AT
25460 CA * 11 20/22 CA CA CA CA CA CA CA CA TG CA CA
28214 AG * 14 26/28 AG AG AG AG AG AG AG AG AG AG AG AG GA AG
35473 CA * 12 23/24 CA CA CA CA CA CA CA CA CA CA CT CA
39112 TG * 12 23/24 TG CG TG TG TG TG TG TG TG TG TG TG
89803 TA * 15 27/30 TA TA TA TG TA TA TA TA TA TA TA TA TA TA GG
94444 CT * 10 18/20 CT CT CT CT CG CT AT CT CT CT
94574 CA * 10 18/20 CA TA CA CA CA CA CA CT CA CA
100529 TG * 10 18/20 TG TG TG TG TG TG TG TG TT CG
101854 AG * 11 20/22 AG AG AG AG AG AG AG AG CG AG AA
104133 CA * 14 26/28 CA CG CA CA CA CA CA CA CA CA CA CA CA CG
108824 TA * 11 20/22 TA TA TA TA TA TA TA TA TA TT TT
112084 CA * 13 24/26 CA CA CA CA CA CA GC CA CA CA CA CA CA
120022 CA * 14 26/28 CA CA AG CA CA CA CA CA CA CA CA CA CA CA
120070 CA * 11 20/22 CA GA CA CA CA CA CA CA GA CA CA
130753 AC * 12 22/24 AC AC AC AC AG AT AC AC AC AC AC AC
130794 CA * 16 29/32 CA CA AG CA CA CA CA CA CA CA CA CA CA CA CA AA
145677 CA * 10 18/20 CA GA CA CA CA CG CA CA CA CA
149653 TG * 12 23/24 TG TG TG TG TG TG TG TG TG TG TG GG
157713 GT * 15 28/30 GT GT GT GT GT GT GC GT GT GT GT GT GT GT GC
159124 TG * 16 29/32 TG CG TG TG TG TG TG TG TG TG TG TG TG TT TG TT
159244 AC * 10 18/20 AC GC AC AC AC AC AC AC AC GC
165110 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA CT CG
166681 AC * 14 26/28 AC AC CC AC AC CC AC AC AC AC AC AC AC AC
167249 TG * 12 22/24 TG TG TG TG TG CG TG TG TG TG TG CG
169255 CA * 10 18/20 CA CA TA CA CA CG CA CA CA CA
175033 AC * 11 20/22 AC TC AA AC AC AC AC AC AC AC AC
175582 TA * 14 26/28 TA TA TA TA TA TA TA TA TA TA TA TA TA CT
175781 CA * 12 22/24 CA CC CA CA CA CA CA CA CA CA CA AA
179444 TG * 11 20/22 TG TG TG TG TG AG TG TG TG TG TT
181414 GT * 18 33/36 GT GC GT GT GT GT GA GT GT GT GT GT GT GT GT GT GC GT
184805 TC * 11 20/22 TC TC TC TC TC TC TC TC TC TG TA
188034 CT * 18 34/36 CT CT CT CT CT CT CT CT CC CT CT CT CT CT CT CG CT CT
192763 CA * 11 20/22 CA CT CA CA CA CA CA CA CA CA CT
192920 TG * 11 20/22 TG TG TG CG TG TG TT TG TG TG TG
193435 GT * 16 29/32 GT GT GT GT GT GT GT GT GT GT GT GC TT GT GT GG
200753 AT * 10 18/20 AT AC AT AT AT AC AT AT AT AT
201220 TA * 17 31/34 TA TA CA TA TA TA TA TA TA TA TA TA TT TA TA TA TG
209248 GT * 15 27/30 GT GT GC GA GT GT GT GT GT GT GT GT GT GT CT
228185 GA * 11 20/22 GA GT GA GA GA GA GA GA GA CA GA
237376 TG * 10 18/20 TG TG TG TG TG TT TA TG TG TG
248276 GT * 11 20/22 GT GT GT GT GT GT GT GA TT GT GT
280605 AG * 18 33/36 AG AG AG AG AG AG AG AG AG AG AG AT AC AG AG AG TG AG
281470 GT * 11 21/22 GT GT GT TT GT GT GT GT GT GT GT
284525 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CC CA GA
286913 TG * 11 20/22 TG TG TG TG TG TG TG TG TG GG GG
-----------------------------------------------------------------------------------------
Total sequence length......................... 298616
Total number of repeats detected.............. 47
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 2 2 1 4 13 9 2 1 1 0 0
15 to 19 1 2 1 0 0 1 1 4 0 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 4 3 1 4 14 10 6 1 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 4 TA = 6
3 AG + 1 GA + 2 CT + 1 TC = 7
6 GT + 10 TG + 14 CA + 4 AC = 34
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7291543|gb|AE003460.1|AE003460 Drosophila melanogaster genomic scaffold 142000013386038 section 9 of 15, complete sequence
Position Repeat Coverage Repeat
2732 AT * 10 18/20 AT AT AC AT AT AT GT AT AT AT
12496 AC * 13 24/26 AC GA AC AC AC AC AC AC AC AC AC AC AC
33738 CT * 11 20/22 CT GT CT CT CT CT CT CG CT CT CT
57175 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CC CT
57533 GT * 16 29/32 GT GT GT GT GT GT GT GT GT GT GT GT GT GA GC GG
89200 CA * 11 20/22 CA CC CA CA CA CA CA CA CA CA CT
96903 AC * 13 24/26 AC CC AC CC AC AC AC AC AC AC AC AC AC
100861 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG TC AG
115699 AG * 23 42/46 AG AG AG AG AG AG AG AG AG AG AG AG AG AG GG AG AG AG AG AT AG AT AA
135940 GT * 15 27/30 GT GT GT GT GT GT GT GT GT GT GT GG GT GG TT
145869 TA * 15 27/30 TA TA TA TA TA TA TA TA TA TG TA CA TA TA TT
229467 GT * 15 27/30 GT CT GT GT GT GT GT GT GT GT GT GT GT GG GC
229666 GT * 12 22/24 GT GT GT GT GT GT GT AT GT GT GT GG
270613 CA * 11 21/22 CA CA CA CA CA CA CA CA CA CA CG
-----------------------------------------------------------------------------------------
Total sequence length......................... 297907
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 0 0 0 2 3 1 1 0 1 0 0
15 to 19 0 1 0 0 0 0 0 3 0 0 0 0
20 to 24 0 0 1 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 1 1 0 2 3 1 4 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 1 TA = 2
1 AG + 0 GA + 1 CT + 0 TC = 2
4 GT + 1 TG + 3 CA + 2 AC = 10
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7291495|gb|AE003459.1|AE003459 Drosophila melanogaster genomic scaffold 142000013386038 section 8 of 15, complete sequence
Position Repeat Coverage Repeat
65747 GT * 22 40/44 GT GT CT GT GT GT GT GT GT GT GT GT GT GT TT GT GA GT GT GT GA GT
71706 TG * 10 19/20 TG TG TG TG TG TG TG TG TG TT
73148 TG * 13 24/26 TG TG TG TA TG TG TG TG TG TG TG TG TC
77969 AT * 11 20/22 AT AC AT AT AA AT AT AT AT AT AT
82836 TA * 17 31/34 TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TG
86470 TG * 10 18/20 TG TG TG TG TG TG TG CG TG TT
97064 AC * 10 19/20 AC AC AC AC AC AC AC AC AC AG
98911 AC * 11 20/22 AC AC AC AC AC AC AC GC AC AC CC
107336 GT * 11 20/22 GT GT GT AT GG GT GT GT GT GT GT
112750 GT * 12 22/24 GT GT GT GT GT TT GT GT GT GA GT GT
113344 AT * 12 22/24 AT AT AT AT AT AC AT AT AT AT AT AC
119524 GT * 11 20/22 GT GT GT GT GA GT GT GT AT GT GT
119740 AC * 10 19/20 AC AC AC AC AC GC AC AC AC AC
120304 CA * 18 33/36 CA CA CC CA CC CA CA CA CA CA CA CA CA CA AA CA CA CA
124513 TG * 12 22/24 TG TG AT TG TG TG TG TG TG TG TG TG
138545 AT * 10 18/20 AT AT AT CT AT AT AT AC AT AT
139356 GT * 12 22/24 GT GT GT GT GT GT GT GT GC GA GT GT
149788 AG * 12 22/24 AG AG AG AG AG AG AC AG AG AG AG AT
172770 TA * 10 19/20 TA TA TA TA TA TA TA TA TA AA
218738 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC AC AT GC
228548 TG * 11 21/22 TG TG TG TG TG TG TG TT TG TG TG
229488 TG * 11 21/22 TG TG TG TG TG TG TG TG TG TG TA
232217 AC * 17 31/34 AC AC AC CC AC AC AC AC AC CC AC AC AC AC AC CC AC
233524 TG * 17 31/34 TG TG TG TG CG TG TG TG TG TG TG TG TG TG TG GG AG
237370 AT * 10 18/20 AT CT AT AT AT AT AT AT AT AA
241456 GT * 11 20/22 GT GT GT GT GT GT GT GT GT CG GT
252709 CA * 10 18/20 CA CA CA CA CA CA CA CC CA TA
253858 GT * 21 38/42 GT GT GT GT GT GG GT GT GT GT GT GT GG GT GT GT GT GT GT GG GG
266279 TG * 10 18/20 TG TG TG TG TG TG TG TG TG CA
276258 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TT TT
294188 CA * 15 28/30 CA CA CA CA CA CA CA CA CA CA CA CA CA CA TT
-----------------------------------------------------------------------------------------
Total sequence length......................... 299572
Total number of repeats detected.............. 31
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 1 1 0 4 1 8 5 0 0 0 0
15 to 19 0 1 0 0 1 2 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 2 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 2 1 0 5 3 9 7 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 2 TA = 6
1 AG + 0 GA + 0 CT + 0 TC = 1
7 GT + 9 TG + 3 CA + 5 AC = 24
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7291432|gb|AE003458.1|AE003458 Drosophila melanogaster genomic scaffold 142000013386038 section 7 of 15, complete sequence
Position Repeat Coverage Repeat
9890 TG * 10 18/20 TG TC TC TG TG TG TG TG TG TG
19926 AT * 13 24/26 AT AT AT AT AT AT AT AT AA AT GT AT AT
36819 GT * 15 27/30 GT GT GT TT GT GT GT GT GT GT GT GT GT GA GA
39313 TA * 11 20/22 TA AA TC TA TA TA TA TA TA TA TA
43454 TG * 17 31/34 TG CG TG CG TG TG TG TG TG TG TG TG TG TG TG AG TG
45999 TA * 10 18/20 TA TA TA TA AA TA TA TA TA CA
46881 CA * 12 22/24 CA CA CA CA CA CA CA CA CG CA CA CT
65320 TG * 13 24/26 TG TG TG TG TG TG TT TG TG TG TG TA TG
80420 TA * 13 24/26 TA TA TA TA TG TA TA TA TA TA TA CA TA
83844 AT * 13 25/26 AT AT AT AT AT AT AT AT AT AT GT AT AT
96135 AC * 13 24/26 AC AC TC AC AC AC AC AC AC AC AC AT AC
97804 AG * 12 22/24 AG TG AG AG AG AG AG AG AG AG CG AG
99872 TA * 11 20/22 TA GA TA TA TA GA TA TA TA TA TA
101283 AC * 10 18/20 AC AC GC AC AC TC AC AC AC AC
103773 TG * 10 18/20 TG TG TG TG TG TG TG TT TG TA
112857 TA * 13 24/26 TA TG TA TA TA TA TA TA TA TA TA TA TT
119431 CA * 11 20/22 CA CA CA CA CA CG CA CA CA CT CA
119464 AC * 10 18/20 AC AC TC AC AC AC CC AC AC AC
150784 TG * 11 20/22 TG TT GG TG TG TG TG TG TG TG TG
159287 AT * 11 20/22 AT AC AT AT AT AT AC AT AT AT AT
160772 AT * 22 41/44 AT AG AT AT AT AT AT AT AT AT GT AT AT AT AT AT AT AT AT AT AT AC
162624 CT * 13 24/26 CT CT CT AT CT CT CT CT CT CT CT CT GT
162878 GA * 12 22/24 GA GA GA GA GA GA GA GA GG GA GA AA
164913 AG * 10 18/20 AG AG AT AG AG AG AG AC AG AG
168775 CA * 13 24/26 CA CA CA CA CA CA CA CA CA GA CA CA TA
169829 CA * 14 26/28 CA CA CA CA CA CA CA CA CA CA CA CA AA CT
171173 AT * 10 19/20 AT AT AT AT AT AT AC AT AT AT
171196 CA * 10 18/20 CA CA CA CA CA CA CA CA CA GG
171372 AC * 11 20/22 AC AC AC AG AC AC AC GC AC AC AC
172931 GT * 10 18/20 GT GT GT GT GT GT GT GT GC GG
184897 GT * 11 20/22 GT GT TT GT GT GT GT GT GT GC GT
186528 CA * 10 18/20 CA AA CA GA CA CA CA CA CA CA
187261 AT * 10 18/20 AT AT AC AT AT AT AT GT AT AT
211438 AC * 10 18/20 AC AC AC AC AC AC AC TC AT AC
213327 GT * 10 19/20 GT GT GT GT GT TT GT GT GT GT
216178 TC * 13 24/26 TC TC TC GC TC TC TC TC TC TC TC TC TT
222309 AC * 11 20/22 AC AC CC AC AC AC AC AC AC GC AC
237191 GT * 13 25/26 GT GT GT GT GT GT GT GT GT GT GT GC GT
237802 CA * 12 22/24 CA AA CA AA CA CA CA CA CA CA CA CA
241215 TA * 11 20/22 TA TA CA TA TA CA TA TA TA TA TA
279583 TC * 17 31/34 TC TC TC TC TC CT TC TC TC TC TC TC TC TC TC TG TC
279720 AC * 10 18/20 AC AC AC TC AC AC AC AT AC AC
279768 GT * 17 32/34 GT GT CT GT GT GT GT GT GT GT GT GT GT GT GT GT GC
290583 TG * 10 18/20 TG TG TA TG TG TG TG CG TG TG
292858 TA * 10 18/20 TA TA TA TA TA TA TA TC CA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 300917
Total number of repeats detected.............. 45
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 7 2 1 7 7 5 4 1 1 0 0
15 to 19 0 0 0 0 0 0 1 2 1 0 0 0
20 to 24 1 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 6 7 2 1 7 7 6 6 2 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
6 AT + 7 TA = 13
2 AG + 1 GA + 1 CT + 2 TC = 6
6 GT + 6 TG + 7 CA + 7 AC = 26
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7291400|gb|AE003457.1|AE003457 Drosophila melanogaster genomic scaffold 142000013386038 section 6 of 15, complete sequence
Position Repeat Coverage Repeat
28208 GT * 11 20/22 GT GT AT GT GT GT GT GT GT GT GC
45765 TG * 11 20/22 TG CG TG TG TG TG TG TG TG GG TG
46002 AG * 10 18/20 AG AG CC AG AG AG AG AG AG AG
48635 CA * 20 36/40 CA CA CA AA CA CA CA CG CA CA CA CA CA CA CA CA CA CA CT GA
63295 TG * 17 31/34 TG TG TG TG TG TG TG TG TG TG TG TG TG TG CG TG GT
72078 AT * 13 24/26 AT CT AT AC AT AT AT AT AT AT AT AT AT
83306 TC * 10 18/20 TC TC TC TC TC TC TC TC TA CC
92861 CT * 18 33/36 CT CT CT CT CC CT CT CC CT CT CT CT CT CT CT CT CT CA
107213 AT * 15 27/30 AT AT AT AT AT AT AT AT AT AT GT GT AT AT TT
113553 TC * 11 20/22 TC CC TC TC TC TC TC TT TC TC TC
174818 GA * 10 18/20 GA GA GA AA GA GA GA GA GA GC
211929 CA * 10 18/20 CA CC CA CA CA CC CA CA CA CA
211960 AC * 11 20/22 AC AC AC AC CC AT AC AC AC AC AC
227548 CA * 13 24/26 CA CA CA GA CA CA CA CA CA CA CA CA AA
243673 CA * 11 20/22 CA TA CA CC CA CA CA CA CA CA CA
254924 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GT GT GG GC
256343 AC * 15 27/30 AC AA CC AC AC AC AC AC AC AC AC AC AC AC AT
256776 CA * 12 22/24 CA CA CA CA CA CA CA CG CC CA CA CA
256832 AC * 10 18/20 AC AC CC AC AC AC AC AG AC AC
264227 AT * 10 19/20 AT AT AT AC AT AT AT AT AT AT
269220 CA * 22 40/44 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CG AT CG CA
269910 TG * 18 33/36 TG TA TG TA TG TG TG TG TG TG TG TG TG TG TG TG AG TG
271462 AC * 11 20/22 AC AC AC AC AC AC AC AC AT AC GC
273072 TA * 13 24/26 TA TA TG GA TA TA TA TA TA TA TA TA TA
273100 TA * 10 18/20 TA TA TA TA TA TA TA GA TC TA
273672 TA * 13 24/26 TA AA TA TA TG TA TA TA TA TA TA TA TA
282920 TG * 10 18/20 TG TT AG TG TG TG TG TG TG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 290792
Total number of repeats detected.............. 27
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 3 1 1 3 4 2 2 2 0 0 0
15 to 19 1 0 0 0 1 0 2 0 0 1 0 0
20 to 24 0 0 0 0 0 2 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 3 1 1 4 6 4 2 2 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 3 TA = 6
1 AG + 1 GA + 1 CT + 2 TC = 5
2 GT + 4 TG + 6 CA + 4 AC = 16
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7291355|gb|AE003456.1|AE003456 Drosophila melanogaster genomic scaffold 142000013386038 section 5 of 15, complete sequence
Position Repeat Coverage Repeat
20878 GT * 12 22/24 GT CT GT GT GT GA GT GT GT GT GT GT
28825 CA * 13 24/26 CA CA CA CA CA CA CA CA AA CA CA CA CG
40265 AC * 11 20/22 AC AC AC AC AC AC AC GC AC AC AA
54473 GT * 12 22/24 GT GT AT GT GT GT GT GT GT GT GT GC
55559 CT * 22 40/44 CT CT GT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CG GA
59384 GT * 10 18/20 GT CG GT GT GT GT GT GT GT GT
61600 TG * 10 18/20 TG TG TG CG AG TG TG TG TG TG
61627 AC * 13 24/26 AC AA AA AC AC AC AC AC AC AC AC AC AC
62576 GT * 13 24/26 GT GT GT GT GT GT TT GT GC GT GT GT GT
63257 AT * 10 18/20 AT AT AT AT GT AT AT AT AG AT
67278 CT * 10 18/20 CT CT CT CT CT CC CT CT CT TT
71429 AT * 23 42/46 AT GT TT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TC AT AT
84585 CA * 10 18/20 CA CA CA CA CA CA CG CA CA CC
88733 TG * 10 18/20 TG TG TG TG CG TG TG TG GG TG
116622 GT * 11 21/22 GT GT GT GT GT GT GT GT GT GT GG
188932 AT * 12 22/24 AT AT AT AT AT AT AT AT AT AC AA AT
235273 AC * 13 24/26 AC TC AC AC AC AC AC AC AC AC AC AC AA
250473 GA * 10 18/20 GA CA GA GA GG GA GA GA GA GA
259112 TG * 12 22/24 TG TG CG TG TG TG TG TG TG TG TG GG
259213 TA * 17 31/34 TA TA TA TA TA TA TA TA TA TA TA TA TA TT TC TA AA
264704 AG * 11 20/22 AG TG AG AG AG AG AG AG GG AG AG
273424 TG * 12 22/24 TG CG AG TG TG TG TG TG TG TG TG TG
274876 AC * 11 20/22 AC AC AC AC AT AC AC TC AC AC AC
275939 CA * 10 18/20 CA CA TA CA CA CA CA CA CA AA
277748 TG * 10 18/20 TG TG TG TG TG CG TG AG TG TG
279114 TG * 12 22/24 TG TT TG TG TG TG TG TG TG TG TG GG
279366 TG * 10 18/20 TG TG TG TG TG TA TG TG TT TG
279893 AC * 10 18/20 AC AC AC TC AC AC AC AA AC AC
281109 TG * 11 20/22 TG TG AG TG TG TG TG TG TG TC TG
286319 AC * 10 18/20 AC AC AC GC AC AC AT AC AC AC
286730 TG * 12 22/24 TG TG CG TG TG TG CG TG TG TG TG TG
287587 CA * 15 27/30 CA CA CA AG CA CA CA CA CA CA CA CA CA CA TA
289704 AC * 10 18/20 AC AC AC AC AC AC AC AC TC AA
293711 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AG AA AC
294597 AC * 10 18/20 AC AC TC AC AC AC AG AC AC AC
-----------------------------------------------------------------------------------------
Total sequence length......................... 298464
Total number of repeats detected.............. 35
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 0 1 1 9 3 9 5 0 1 0 0
15 to 19 0 1 0 0 0 1 0 0 0 0 0 0
20 to 24 1 0 0 0 0 0 0 0 0 1 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 1 1 1 9 4 9 5 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 1 TA = 4
1 AG + 1 GA + 2 CT + 0 TC = 4
5 GT + 9 TG + 4 CA + 9 AC = 27
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7291326|gb|AE003455.1|AE003455 Drosophila melanogaster genomic scaffold 142000013386038 section 4 of 15, complete sequence
Position Repeat Coverage Repeat
7613 AT * 11 20/22 AT AT AT AT AT TT AA AT AT AT AT
7653 AT * 10 18/20 AT GT AT GT AT AT AT AT AT AT
9784 TA * 11 20/22 TA TA TA CA TA TA TA CA TA TA TA
17831 CA * 17 32/34 CA CA CA CA CA CA CA CA CA CA CA CA CA GA CA GA CA
19401 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG AA TG
49586 AT * 10 18/20 AT AT AT AT AT AA AT AC AT AT
59168 GT * 11 20/22 GT GT GC GT GC GT GT GT GT GT GT
87109 CA * 12 22/24 CA CA TA CA CA CA CG CA CA CA CA CA
92277 AT * 12 22/24 AT AC AT AT AT AT CT AT AT AT AT AT
120700 AT * 10 18/20 AT AT AT AT AT AA AT AC AT AT
153917 AG * 17 31/34 AG AG AG AG AG AG AG AG AG AG AG AG AG AG CG AG GC
170640 AC * 11 20/22 AC AC CC TC AC AC AC AC AC AC AC
198772 GT * 10 18/20 GT GT GT AT GT GT GT GT TT GT
204160 CA * 13 25/26 CA CA CA CA CA CA CA CA CA CA CA CT CA
209957 TC * 15 27/30 TC TC TC TC TC TC TC TC TC TC TC TC TT TC AG
213480 GT * 10 18/20 GT GT GT GC TT GT GT GT GT GT
213506 TG * 13 24/26 TG TG TG TG TG TG TG AG TG TG TG TA TG
226298 CA * 10 18/20 CA TA CA CA CA CA CA CA CA CG
236026 TA * 10 18/20 TA TA TA TA TA AA CA TA TA TA
253268 AC * 10 18/20 AC AC AC AC AC AC AC AC AC TT
255930 AT * 11 20/22 AT AT AT AT AT AT GA AT AT AT AT
266579 AC * 11 20/22 AC TC AC TC AC AC AC AC AC AC AC
-----------------------------------------------------------------------------------------
Total sequence length......................... 302502
Total number of repeats detected.............. 22
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 6 2 0 0 3 3 2 3 0 0 0 0
15 to 19 0 0 1 0 0 1 0 0 1 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 6 2 1 0 3 4 2 3 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
6 AT + 2 TA = 8
1 AG + 0 GA + 0 CT + 1 TC = 2
3 GT + 2 TG + 4 CA + 3 AC = 12
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7291292|gb|AE003454.1|AE003454 Drosophila melanogaster genomic scaffold 142000013386038 section 3 of 15, complete sequence
Position Repeat Coverage Repeat
3432 TG * 17 31/34 TG CT TG TG TG TG TG TG TG TG TG TG TG TG TG TG AG
20316 TG * 10 18/20 TG TG TG TG CG TA TG TG TG TG
26720 TG * 12 22/24 TG AG TG TG TG TG TG TG TG TG TG TA
32142 AG * 22 40/44 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AA AG AG AT AG AA AG TG
35110 GT * 13 24/26 GT GT GT GT GT GT GT GT TT GT TT GT GT
39554 AC * 19 35/38 AC AT AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC GC AG
43949 AT * 10 18/20 AT AC AT AT AT AT AT AT AT AA
44157 TG * 10 18/20 TG TG TG TG TG CG TG TG TG TA
47047 TC * 11 20/22 TC TC TC TC TC TC TA TC TC TC TG
52218 CA * 11 21/22 CA CA GA CA CA CA CA CA CA CA CA
54388 GT * 12 23/24 GT GT GC GT GT GT GT GT GT GT GT GT
61276 AG * 10 18/20 AG AG AG AT AG AG AG AG AT AG
61313 GA * 10 18/20 GA GA GA GA GA GA GA GT GC GA
63473 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AA AA
64205 AC * 16 29/32 AC AC AC AC AC AC AC AC AC AC AC AC TC AC AC CG
64364 AC * 10 18/20 AC AC AC AC AC AC AT AC AC CC
67975 AC * 10 18/20 AC AC AC AC AC AC AC TC GC AC
80116 CA * 11 20/22 CA CC CA CG CA CA CA CA CA CA CA
112984 GT * 10 18/20 GT GT GT GT GT GT GT GC GT GC
113479 TC * 17 31/34 TC CC TC TC TC TC TC TC TC TC TC TC TC TC TG TC TT
124473 CA * 11 20/22 CA CC CA TA CA CA CA CA CA CA CA
125164 AG * 13 24/26 AG AG TG AG TG AG AG AG AG AG AG AG AG
133082 GA * 10 18/20 GA GC GA GA GA GA GA GA GC GA
134657 CA * 13 24/26 CA AA CA CA CA CA CA CA CA CA CA TA CA
156265 AC * 10 18/20 AC AC AC AC AA AC AC AC AC AG
157352 GA * 13 24/26 GA GA GA GT GA GA GA GA GA GA CA GA GA
157898 AT * 12 22/24 AT AT AT AT AT AT AT AT AT AT AT GA
161113 AC * 11 20/22 AC CC AC AC AA AC AC AC AC AC AC
173674 CA * 11 21/22 CA CA CA CA CA CA CA CA CA CT CA
173743 TA * 12 22/24 TA CA TA TA TA GA TA TA TA TA TA TA
175327 CA * 17 32/34 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CC GA
178183 AC * 17 32/34 AC AC AC AA AC GC AC AC AC AC AC AC AC AC AC AC AC
184079 CA * 11 20/22 CA CG CA CA CA CA CA CA TA CA CA
184356 AT * 10 18/20 AT AT GT AT AT AC AT AT AT AT
185942 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AG TC
187440 AT * 20 36/40 AT AT AT AT AT AT AT AT AT AT AT AC AT AT TT AT AT AT AC AC
188450 TG * 12 23/24 TG TG TG TG TG CG TG TG TG TG TG TG
188684 GT * 11 20/22 GT GT GC GT GT GT GT GT GA GT GT
189168 CA * 11 20/22 CA CG CA CA CA CA CA CA CA CT CA
190767 AG * 13 24/26 AG AG CA AG AG AG AG AG AG AG AG AG AG
196053 CA * 11 21/22 CA CA CA CA CA CA CA CA CA CA GA
204833 TG * 17 31/34 TG TG CG TG TG TG TG TG TG TG TG TG TG TG TG TG GC
205396 AC * 11 20/22 AC GC GC AC AC AC AC AC AC AC AC
210275 CA * 10 18/20 CA CA CA CA CA CA CA CA TA TA
210295 TA * 12 22/24 TA TA TA TA TA TA CA TA TT TA TA TA
212207 TA * 12 22/24 TA CA TC TA TA TA TA TA TA TA TA TA
216664 GT * 11 21/22 GT GT GT GT GT GT GT GT AT GT GT
248834 AT * 15 27/30 AT AT AT AT AC AT AT AT AT AT AT AT AT TT TT
293570 AT * 12 22/24 AT AT AT AT AT AT AT AT AT AT AT TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 300941
Total number of repeats detected.............. 49
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 3 3 3 7 9 4 5 1 0 0 0
15 to 19 1 0 0 0 3 1 2 0 1 0 0 0
20 to 24 1 0 1 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 6 3 4 3 10 10 6 5 2 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
6 AT + 3 TA = 9
4 AG + 3 GA + 0 CT + 2 TC = 9
5 GT + 6 TG + 10 CA + 10 AC = 31
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7291238|gb|AE003453.1|AE003453 Drosophila melanogaster genomic scaffold 142000013386038 section 2 of 15, complete sequence
Position Repeat Coverage Repeat
9826 TA * 12 22/24 TA TA GA TA TA TA TA TA TA TA GA TA
13910 GA * 16 30/32 GA GA GA GA GA GA GA GA GG GA GA GA GG GA GA GA
16245 AC * 11 20/22 AC CC AC AC AC AC AC AC AC AC AG
26966 CA * 10 19/20 CA CC CA CA CA CA CA CA CA CA
29311 GT * 12 22/24 GT GT GT GA GT GT GT GG GT GT GT GT
66159 AT * 11 20/22 AT AT AT AA AT AT AT AA AT AT AT
66183 AT * 11 20/22 AT AT AT AA AT AT AT AA AT AT AT
66207 AT * 11 20/22 AT AT AT AA AT AT AT AA AT AT AT
66231 AT * 11 20/22 AT AT AT AA AT AT AT AA AT AT AT
66255 AT * 11 20/22 AT AT AT AA AT AT AT AA AT AT AT
66279 AT * 11 20/22 AT AT AT AA AT AT AT AA AT AT AT
66319 AT * 11 20/22 AT AT AT AA AT AT AT AA AT AT AT
66343 AT * 11 20/22 AT AT AT AA AT AT AT AA AT AT AT
66367 AT * 11 20/22 AT AT AT AA AT AT AT AA AT AT AT
66391 AT * 11 20/22 AT AT AT AA AT AT AT AA AT AT AT
66415 AT * 11 20/22 AT AT AT AA AT AT AT AA AT AT AT
66439 AT * 11 20/22 AT AT AT AA AT AT AT AA AT AT AT
88488 CT * 15 27/30 CT CG CC CT CT CT CT CT CT CT CT CT CT CT CG
90790 AT * 11 20/22 AT AT AT AT GT AT AT AC AT AT AT
94341 CA * 13 24/26 CA CA CA CG CA CA CA CA CA CA CA AA CA
95025 TA * 10 18/20 TA AA TA TA TA TA CA TA TA TA
108135 AG * 10 19/20 AG AG AG AG AG AG AG AG AG AA
108222 CA * 11 20/22 CA CA CA CA CA CA CA CG CA CA CC
114541 AG * 12 22/24 AG AG AG AG AG AG AG AG AG AT AG AT
116588 CA * 16 30/32 CA CA CT CA CC CA CA CA CA CA CA CA CA CA CA CA
119546 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GA GT GC
119751 AC * 14 26/28 AC AC AA AC AA AC AC AC AC AC AC AC AC AC
122276 CA * 15 27/30 CA CA CA CG CA CA CA CA CA CA CA CA CA CG CG
122876 TG * 11 20/22 TG TG TG TG TG TG TT TA TG TG TG
131379 TG * 16 29/32 TG TG TA TG TG TG TG TG TG TG TG TG TG CG TT TG
143490 GT * 12 22/24 GT GT GT GC GT GT GT GT AT GT GT GT
144076 AG * 12 22/24 AG AG AG AG AG AG AG AG AG AG CC AG
150215 GT * 11 20/22 GT GT GT GT GT GT GT GT GA GC GT
155601 AC * 12 23/24 AC AC AC AC AC AC AC AC AC AC AC AG
158388 CA * 13 24/26 CA CC GA CA CA CA CA CA CA CA CA CA CA
158438 CA * 10 19/20 CA CA CA CA CA CA CT CA CA CA
160082 TG * 10 18/20 TG TG TG TG TG TG TG TG TG GC
160372 TG * 15 27/30 TG TG TT TG TG TG TG TG TG TG TG AG TG TG CG
162333 AG * 10 18/20 AG AG CG AG AG AG AG AG AG AC
167716 GT * 12 22/24 GT GT GC GT GT GT GT GT GT GT GT GC
170480 TA * 12 22/24 TA TA TA CT TA TA TA TA TA TA TA TA
172969 AC * 11 20/22 AC GC AC AC AC AC AC AC CC AC AC
181364 AC * 10 18/20 AC AC AC GC AC AC AC AC AC AT
193394 GT * 15 27/30 GT GG GT GT GT GT GT GT GT GT GT GT GC GT GC
193989 TA * 13 24/26 TA TA TA TA TA TA CA TA TA TA TT TA TA
198721 TA * 10 18/20 TA CA TA CA TA TA TA TA TA TA
215931 CA * 11 20/22 CA CA CA CA CA CA CA CA CT CG CA
222529 CA * 14 26/28 CA CA CA CA AA CA CA CA CA CA CA CA CA CG
226307 GT * 10 18/20 GT GT GA GT GT GT GC GT GT GT
268966 TG * 12 22/24 TG TG TG TG TG TG TA TG TG TG TC TG
272989 AT * 10 18/20 AT AT AC AT AT AT AT TT AT AT
273417 GT * 13 24/26 GT AT CT GT GT GT GT GT GT GT GT GT GT
276325 GA * 13 24/26 GA AA GA AA GA GA GA GA GA GA GA GA GA
277923 AC * 13 25/26 AC AC AC AC AG AC AC AC AC AC AC AC AC
288142 TG * 11 20/22 TG TG AG TG TG TG TG TG TG TG CG
288345 TG * 10 18/20 TG TA TC TG TG TG TG TG TG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 302547
Total number of repeats detected.............. 56
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 14 5 4 1 6 7 5 7 0 0 0 0
15 to 19 0 0 0 1 0 2 2 1 0 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 14 5 4 2 6 9 7 8 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
14 AT + 5 TA = 19
4 AG + 2 GA + 1 CT + 0 TC = 7
8 GT + 7 TG + 9 CA + 6 AC = 30
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7291191|gb|AE003452.1|AE003452 Drosophila melanogaster genomic scaffold 142000013386038 section 1 of 15, complete sequence
Position Repeat Coverage Repeat
14387 CA * 15 27/30 CA CA CT CA CA CA CA CA CA CA CA TA CA CA CC
21867 CA * 11 20/22 CA GA CA CA CA CA CG CA CA CA CA
37657 AC * 12 22/24 AC AC AA GC AC AC AC AC AC AC AC AC
49779 GT * 10 18/20 GT GT GT GC GT GT GT GT TT GT
58607 CA * 16 29/32 CA CA CA CA CT CA CA CA CA CA CA CA CA GA CG CA
59713 TG * 11 21/22 TG TG TG TG TG TG TG TG TG CG TG
59775 CT * 11 20/22 CT CT CT CT CT CG CT CT CT CG CT
72385 TG * 12 23/24 TG TG TA TG TG TG TG TG TG TG TG TG
80009 AC * 11 20/22 AC AC AC AC AC AC AC AC AG CC AC
82840 TG * 10 18/20 TG TG TG TG TG TG TG TC CG TG
85503 AT * 13 24/26 AT TT AT AT AT AT AG AT AT AT AT AT AT
97970 AC * 14 26/28 AC AC CC AC AC AC AC AC AC AC AC TC AC AC
99124 TG * 15 27/30 TG CG TG CG TG TG TG TG TG TG TG TG TG TG GG
100666 GT * 11 20/22 GT GG GC GT GT GT GT GT GT GT GT
105436 CA * 10 19/20 CA CA CA CA CA CA CA CA CA TA
106220 AT * 14 26/28 AT AT AT AC AT AT AT AT AT AT AT AT TT AT
106381 TC * 17 31/34 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TT CC CC
106775 GT * 17 32/34 GT GT GT GT GC GT GT GT GT GT GT GT GT GT GT GT GC
112485 TG * 10 18/20 TG TG TG TG TG TG TG TG TG GC
114041 CT * 15 27/30 CT CT CC CT CT CT CG CT CT CT CT CT CT CT CG
120614 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CG CG CA CA
125054 AG * 20 36/40 AG AG AG AG AG AG AG AG AG AA AG AG AT AG AG AG GG AG AG TG
131377 AC * 13 24/26 AC GC AC AC AC AC AC AC AC AC AT AC AC
131526 GT * 10 18/20 GT GT GT GT GT GT GT GT GC GG
131662 CT * 10 18/20 CT CG CT CT CT CT CT CT CT CC
132646 CA * 11 20/22 CA CA GA TA CA CA CA CA CA CA CA
132702 CA * 20 36/40 CA CT CA CA CA CA CA CA CA CA CA CA CA CA CA CA TA CA TA CG
133900 AG * 17 31/34 AG AG AG AG AG AG AG AG AG AG AC AG AG AG AG TG GG
137574 GA * 13 24/26 GA GA GA GA GA GA GA GA GA GA GA GA AG
150764 AG * 12 22/24 AG AG AG TG CG AG AG AG AG AG AG AG
166056 CA * 10 18/20 CA TT CA CA CA CA CA CA CA CA
170639 AC * 12 22/24 AC AT AC AC AC AC AC AC AC AC AC AA
178710 CT * 10 18/20 CT CG CT CT CT CC CT CT CT CT
178869 CT * 13 24/26 CT CT CT CT CT CT CT CT GT CT CT CT TT
181462 TG * 16 29/32 TG TG TG TG TG TT TG TG TG TG TG TG TG TA TG CG
182244 AC * 12 22/24 AC TC AC AC AC AC AC GC AC AC AC AC
184183 CA * 17 31/34 CA CA CA CA CA CA CA CA CA CA TA CA CA CA CA AA CG
187651 AT * 14 26/28 AT AT AT TT CT AT AT AT AT AT AT AT AT AT
212171 AT * 17 31/34 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA TA
212211 AT * 16 29/32 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA TA
235922 GT * 10 18/20 GT GT GT GT GT GC GT GT GT GA
239345 TA * 11 20/22 TA TT TA TA AA TA TA TA TA TA TA
240324 AT * 13 24/26 AT AT AT GC AT AT AT AT AT AT AT AT AT
246232 TA * 11 20/22 TA TA TG TA CA TA TA TA TA TA TA
258997 AT * 11 20/22 AT AT AT AT AT AT AA CT AT AT AT
267539 TA * 10 18/20 TA TA TT TA TA TT TA TA TA TA
268252 AT * 10 18/20 AT AT AT AT GT AT AT AT AT AA
285296 TA * 11 20/22 TA TA TA TA TA TA TA TA TA TA AT
287596 TA * 10 19/20 TA TA AA TA TA TA TA TA TA TA
288742 TA * 10 18/20 TA TA CA TA TA TG TA TA TA TA
301625 TA * 11 20/22 TA TA AA TA TA TA TA TG TA TA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 305505
Total number of repeats detected.............. 51
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 6 7 1 1 6 5 4 4 0 4 0 0
15 to 19 2 0 1 0 0 3 2 1 1 1 0 0
20 to 24 0 0 1 0 0 1 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 8 7 3 1 6 9 6 5 1 5 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
8 AT + 7 TA = 15
3 AG + 1 GA + 5 CT + 1 TC = 10
5 GT + 6 TG + 9 CA + 6 AC = 26
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Di-nucleotide repeats in Drosophila melanogaster Chromosome-Arm-2R Genomic Scaffolds
Minimum di-nucleotide repeating units = 10 (allowing maximum 10% mismatch)
Total 2165 repeats covering 48376 / 52918 base pairs
Length distribution of all di-nucleotide repeats
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
no. of repeat-units 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 >=50
total repeats 669 498 360 231 55 96 78 62 42 5 16 15 12 7 1 3 5 2 1 1 0 3 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Length distribution of all di-nucleotide repeats in range
no. of repeat-units 10-14 15-19 20-24 25-29 30-34 35-39 40-44 45-49 >=50
total repeats--> 1813 283 51 12 4 1 0 1 0
AT 281 33 8 3 1 0 0 0 0
TA 199 26 5 3 1 0 0 0 0
AG 79 15 10 0 2 0 0 0 0
GA 48 4 1 1 0 0 0 0 0
AC 223 27 6 1 0 0 0 1 0
CA 327 65 8 2 0 0 0 0 0
TG 304 52 4 0 0 0 0 0 0
GT 257 40 4 0 0 1 0 0 0
TC 36 10 0 0 0 0 0 0 0
CT 59 11 5 2 0 0 0 0 0
GC 0 0 0 0 0 0 0 0 0
CG 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------
Sequence-wise distribution of di-nucleotide repeats
Sequence Sequence-length total repeats detected
gi|7289019|gb|AE0029 3612 bp 0
gi|7289079|gb|AE0030 19141 bp 0
gi|7289475|gb|AE0030 29176 bp 0
gi|7289453|gb|AE0032 7951 bp 1
gi|7289112|gb|AE0033 43718 bp 0
gi|7289300|gb|AE0025 11918 bp 0
gi|7289520|gb|AE0026 2655 bp 0
gi|7289039|gb|AE0026 12312 bp 3
gi|7288934|gb|AE0026 13170 bp 0
gi|7289090|gb|AE0026 24153 bp 0
gi|7288943|gb|AE0026 32417 bp 0
gi|7288917|gb|AE0027 1893 bp 0
gi|7289853|gb|AE0027 107231 bp 17
gi|7289862|gb|AE0027 62674 bp 1
gi|7289517|gb|AE0027 4416 bp 0
gi|7289299|gb|AE0027 32269 bp 0
gi|7289417|gb|AE0028 3603 bp 0
gi|7289767|gb|AE0028 16864 bp 0
gi|7288929|gb|AE0029 3000 bp 0
gi|7289383|gb|AE0029 21261 bp 0
gi|7288949|gb|AE0029 1824 bp 0
gi|7288953|gb|AE0029 14708 bp 1
gi|7289359|gb|AE0029 19947 bp 0
gi|7289183|gb|AE0029 3372 bp 0
gi|7289437|gb|AE0029 43487 bp 1
gi|7289322|gb|AE0029 19750 bp 0
gi|7289200|gb|AE0029 26448 bp 0
gi|7289372|gb|AE0029 13643 bp 0
gi|7289348|gb|AE0030 17194 bp 0
gi|7289338|gb|AE0030 26058 bp 1
gi|7289553|gb|AE0030 1073 bp 0
gi|7288979|gb|AE0030 59055 bp 2
gi|7289342|gb|AE0030 29994 bp 0
gi|7289208|gb|AE0030 1546 bp 0
gi|7289130|gb|AE0030 55603 bp 1
gi|7289411|gb|AE0025 1058 bp 0
gi|7289416|gb|AE0026 1239 bp 0
gi|7289156|gb|AE0026 4403 bp 0
gi|7289408|gb|AE0026 1527 bp 0
gi|7289468|gb|AE0030 1019 bp 0
gi|7289446|gb|AE0030 22669 bp 0
gi|7289145|gb|AE0030 22016 bp 0
gi|7289388|gb|AE0031 1511 bp 0
gi|7289263|gb|AE0027 40796 bp 2
gi|7289785|gb|AE0030 3738 bp 0
gi|7289275|gb|AE0026 2000 bp 0
gi|7289053|gb|AE0027 19182 bp 2
gi|7289057|gb|AE0030 12708 bp 1
gi|7289223|gb|AE0030 38153 bp 0
gi|7316105|gb|AE0027 0 bp 0
gi|7302256|gb|AE0037 128817 bp 1
gi|7302239|gb|AE0037 307228 bp 4
gi|7302231|gb|AE0037 316735 bp 14
gi|7302205|gb|AE0037 296279 bp 14
gi|7302167|gb|AE0037 313072 bp 16
gi|7289017|gb|AE0030 24781 bp 0
gi|7316098|gb|AE0027 0 bp 0
gi|7302304|gb|AE0037 210451 bp 10
gi|7302263|gb|AE0037 298904 bp 16
gi|7316102|gb|AE0027 0 bp 0
gi|7304243|gb|AE0038 252413 bp 12
gi|7304203|gb|AE0038 262082 bp 16
gi|7304160|gb|AE0038 259764 bp 35
gi|7304109|gb|AE0038 261850 bp 23
gi|7304068|gb|AE0038 263411 bp 21
gi|7304040|gb|AE0038 234905 bp 22
gi|7304001|gb|AE0038 253189 bp 19
gi|7303956|gb|AE0038 259860 bp 17
gi|7303908|gb|AE0038 257324 bp 12
gi|7303875|gb|AE0038 265562 bp 41
gi|7303842|gb|AE0038 261713 bp 13
gi|7303794|gb|AE0038 260916 bp 22
gi|7303755|gb|AE0038 261895 bp 32
gi|7303717|gb|AE0038 258492 bp 44
gi|7303677|gb|AE0038 259920 bp 22
gi|7303662|gb|AE0038 261694 bp 72
gi|7303588|gb|AE0038 291089 bp 19
gi|7303570|gb|AE0038 278196 bp 37
gi|7303542|gb|AE0038 249001 bp 10
gi|7303489|gb|AE0038 262740 bp 47
gi|7303437|gb|AE0038 266350 bp 22
gi|7303396|gb|AE0038 290711 bp 26
gi|7303370|gb|AE0038 272870 bp 35
gi|7303326|gb|AE0038 237528 bp 29
gi|7303288|gb|AE0038 264644 bp 34
gi|7303263|gb|AE0038 262257 bp 55
gi|7303233|gb|AE0038 260779 bp 40
gi|7303189|gb|AE0038 240495 bp 20
gi|7303162|gb|AE0038 260713 bp 28
gi|7303119|gb|AE0038 258778 bp 39
gi|7303102|gb|AE0038 257946 bp 57
gi|7303071|gb|AE0038 259379 bp 13
gi|7303048|gb|AE0038 258873 bp 39
gi|7303026|gb|AE0038 260968 bp 29
gi|7302975|gb|AE0038 262173 bp 35
gi|7302923|gb|AE0038 260067 bp 46
gi|7302890|gb|AE0038 268219 bp 55
gi|7302851|gb|AE0038 270307 bp 23
gi|7302807|gb|AE0038 259817 bp 14
gi|7302766|gb|AE0038 282588 bp 62
gi|7302706|gb|AE0038 262401 bp 14
gi|7302679|gb|AE0038 272650 bp 46
gi|7302632|gb|AE0038 267271 bp 21
gi|7302581|gb|AE0037 277015 bp 26
gi|7302535|gb|AE0037 261090 bp 35
gi|7302512|gb|AE0037 287859 bp 54
gi|7302472|gb|AE0037 268420 bp 31
gi|7302434|gb|AE0037 260400 bp 29
gi|7302424|gb|AE0037 261083 bp 10
gi|7302408|gb|AE0037 263693 bp 8
gi|7302377|gb|AE0037 261900 bp 48
gi|7302331|gb|AE0037 260580 bp 28
gi|7288937|gb|AE0030 20167 bp 1
gi|7316096|gb|AE0025 0 bp 0
gi|7291893|gb|AE0034 283099 bp 7
gi|7291836|gb|AE0034 328500 bp 22
gi|7291775|gb|AE0034 306848 bp 26
gi|7291737|gb|AE0034 299975 bp 22
gi|7291637|gb|AE0034 300542 bp 15
gi|7291588|gb|AE0034 298616 bp 47
gi|7291543|gb|AE0034 297907 bp 14
gi|7291495|gb|AE0034 299572 bp 31
gi|7291432|gb|AE0034 300917 bp 45
gi|7291400|gb|AE0034 290792 bp 27
gi|7291355|gb|AE0034 298464 bp 35
gi|7291326|gb|AE0034 302502 bp 22
gi|7291292|gb|AE0034 300941 bp 49
gi|7291238|gb|AE0034 302547 bp 56
gi|7291191|gb|AE0034 305505 bp 51
--------------------------------------------------------------------------------------------------------
Total 21068156 bp 2165
--------------------------------------------------------------------------------------------------------
-------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
326 AT + 234 TA = 560
106 AG + 54 GA + 77 CT + 46 TC = 283
302 GT + 360 TG + 402 CA + 258 AC = 1322
0 GC + 0 CG = 0
-------------------------------------------------------------------------------
-------------------------------------------------------------------------------
Frequency distribution of di-nucleotides repeated for 20 times or more
12 AT + 9 TA = 21
12 AG + 2 GA + 7 CT + 0 TC = 21
5 GT + 4 TG + 10 CA + 8 AC = 27
0 GC + 0 CG = 0
-------------------------------------------------------------------------------
Total repeat >= 40 bp = 69
-------------------------------------------------------------------------------
© Division of Biochemical Sciences, National Chemical Laboratory, Pune 411008, INDIA