Tri-Nucleotide Repeats in Genomic Sequences
Tri-Nucleotide Repeats in
Drosophila melanogaster Chromosome-Arm-2L Genomic Scaffolds
Genomic sequence
gi|7316101|gb|AE002638.1|AE002638 Drosophila melanogaster genomic scaffold 142000013386046, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7296218|gb|AE003590.1|AE003590 Drosophila melanogaster genomic scaffold 142000013386046 section 16 of 16, complete sequence
Position Repeat Coverage Repeat
65043 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CAA
79070 ACC * 7 19/21 ACC AAT ACC ACC ACC ACC ACC
91517 CAG * 8 22/24 CAG CAA CAA CAG CAG CAG CAG CAG
109078 CTG * 7 19/21 CTG CTG CTG TTG TTG CTG CTG
143721 ATT * 8 22/24 ATT ATT ATT ATT ATT GTT GTT ATT
143785 TGT * 8 23/24 TGT TGT TGC TGT TGT TGT TGT TGT
163127 CTC * 7 19/21 CTC CTC GTC CTC CTC CTC ATC
-----------------------------------------------------------------------------------------
Total sequence length......................... 301627
Total number of repeats detected.............. 7
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 1 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 1 TGT = 1
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 1
0 AGC + 0 GCA + 2 CAG + 0 GCT + 1 CTG + 0 TGC = 3
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
1 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7296179|gb|AE003589.1|AE003589 Drosophila melanogaster genomic scaffold 142000013386046 section 15 of 16, complete sequence
Position Repeat Coverage Repeat
5616 GCA * 7 20/21 GCA GCA GCA GCA GCA GCA ACA
6666 TGC * 7 20/21 TGC TGC TGC TGT TGC TGC TGC
11882 CTG * 9 25/27 CTG GTT CTG CTG CTG CTG CTG CTG CTG
33088 TGC * 12 33/36 TGC TGC TCC TGC TGG TGC TGC TGC TGC TGC TGC TGG
62828 CAC * 12 33/36 CAC CAC CAC TAC CAC CAC CAC CAC CAG CAC CAC CAG
68599 AAG * 7 19/21 AAG AAG GAG AAG AAG GAG AAG
80588 GCA * 11 30/33 GCA GCA ACA GCA GCT GCA GCA GCA GCA GCA ACA
83122 TCA * 8 23/24 TCA TCA TCA TCA TCA TCA TCA TCT
99926 CGC * 7 19/21 CGC CGT CGC CGC CGC CGT CGC
118699 TTG * 8 22/24 TTG CTG TTG TTG TTG TTG TTG TGG
118954 CAA * 8 22/24 CAA CAA CAA CAA CAA CAA AAA CTA
132178 CGG * 7 19/21 CGG CAG CGG CGT CGG CGG CGG
138514 CTG * 8 22/24 CTG CTG TTG TTG CTG CTG CTG CTG
147252 CAG * 8 22/24 CAG CAA CAG CAG CAG CAG CAG CAA
154056 CTG * 9 25/27 CTG CTG CTG CTG TTG CTG CTG CTG TTG
154111 TGC * 7 19/21 TGC TGC TGT TGC TGC TGC TGA
164685 TGC * 9 25/27 TGC TGC TGC TGC TGC TGC TGT TGC TTC
166648 GGT * 7 20/21 GGT GGT GGT GGT GCT GGT GGT
170537 AGG * 7 19/21 AGG AGA AGG AGG AGG AGG TGG
173008 CTG * 12 33/36 CTG CCG CTG CTG CTG CTG CTG CTT CTG CTG CTG ATG
188281 CTG * 7 19/21 CTG CTG CTG CTG GTG CTG CTC
191414 CTT * 7 19/21 CTT CTT CTT CTC CTC CTT CTT
203490 AGC * 7 19/21 AGC AGC AGC AGC AGT AGC CGC
268011 ATC * 7 19/21 ATC ATC ATC ATC ATC ATC AGG
-----------------------------------------------------------------------------------------
Total sequence length......................... 302473
Total number of repeats detected.............. 24
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 4 3 1 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 1 1 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAC 1 0 1 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 5 4 1 0 0 0 0 0 0 0 0 0 0
CGG 1 1 0 0 0 0 0 0 0 0 0 0 0
CGC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
1 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 2
0 AAC + 0 ACA + 1 CAA + 0 GTT + 1 TTG + 0 TGT = 2
0 ATG + 0 TGA + 0 GAT + 0 CAT + 1 ATC + 1 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 1
1 AGC + 2 GCA + 1 CAG + 0 GCT + 5 CTG + 4 TGC = 13
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 1 CAC + 1 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 1 CGG + 0 GCC + 0 CCG + 1 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7296139|gb|AE003588.1|AE003588 Drosophila melanogaster genomic scaffold 142000013386046 section 14 of 16, complete sequence
Position Repeat Coverage Repeat
15749 CCT * 9 25/27 CCT CCT CCT CCT CCT CCT CAT CCT CAT
43772 TTG * 8 22/24 TTG TTC CTG TTG TTG TTG TTG TTG
46327 CGA * 7 19/21 CGA CAA CGA CGA CGA CGA CGG
47288 CGA * 10 28/30 CGA CGA CGA CGA CGA CGA CGA CGA GGA GGA
64261 TCC * 7 20/21 TCC TCC TCC CCC TCC TCC TCC
83658 GCA * 8 22/24 GCA GCA GCA GCT GCA TCA GCA GCA
85088 CAG * 10 28/30 CAG CAG CAG CAA CAG CAG CAG CAC CAG CAG
85196 CAG * 8 23/24 CAG CAG CAG CAG CAG CAA CAG CAG
91326 TGA * 7 19/21 TGA TGA TCA TGA TGA TGA TAA
108816 ATA * 14 38/42 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATC TGT
113315 CTC * 8 22/24 CTC CTC CTC CTC CTC CTT CTC CGC
119727 GAG * 7 20/21 GAG GAG GAG GAG GAG GAG GAA
139047 AGG * 11 30/33 AGG ATG AGG AGG AGG AGG AGG AGG AGG CGG TGG
140460 GTG * 7 19/21 GTG GTG GTG GTG GTA GTG CTG
172683 TGA * 8 22/24 TGA TGC TGA TGT TGA TGA TGA TGA
185914 CAT * 7 19/21 CAT CAT CAT CAT CAT CGT CGT
226022 CTG * 8 23/24 CTG CTG CTG CTG CTT CTG CTG CTG
272041 AAT * 7 19/21 AAT AAT AAT AAT AAA AAA AAT
272314 GAT * 8 22/24 GAT GAT GAT GAT GAT TAT GAT TAT
272401 ACA * 8 22/24 ACA ACA ACA ACA ACA ACA ACA AGG
275248 GCA * 13 36/39 GCA GCA GCT TCA GCA GCA GCA GCA GCA TCA GCA GCA GCA
280423 GCT * 8 22/24 GCT GCT GGT GCT GCT GCT GCT GGT
-----------------------------------------------------------------------------------------
Total sequence length......................... 299378
Total number of repeats detected.............. 22
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 0 0 1 0 0 0 0 0 0 0 0 0
AGG 1 0 1 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 2 2 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 1 0 1 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 1 1 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CGA 2 1 1 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 0 CAA + 0 GTT + 1 TTG + 0 TGT = 2
0 ATG + 2 TGA + 1 GAT + 1 CAT + 0 ATC + 0 TCA = 4
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 1 GAG + 1 CCT + 1 CTC + 1 TCC = 5
0 AGC + 2 GCA + 2 CAG + 1 GCT + 1 CTG + 0 TGC = 6
0 ACG + 2 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 2
0 ACC + 0 CCA + 0 CAC + 0 GGT + 1 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7296095|gb|AE003587.1|AE003587 Drosophila melanogaster genomic scaffold 142000013386046 section 13 of 16, complete sequence
Position Repeat Coverage Repeat
28997 TGA * 8 22/24 TGA TGA TGA TGA TGA TGT TGA TGT
36112 TCC * 7 19/21 TCC TTC TCC TCC ACC TCC TCC
36732 TGC * 10 27/30 TGC TGC TGC TGC TGC TGC TGC TGC TGT TTA
47824 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAC CAC
47848 CAC * 12 33/36 CAC CAC CAC CAC CAC CGC CAC CAG CAC CAG CAC CAC
95302 CTG * 7 20/21 CTG CTG CTG CTC CTG CTG CTG
98993 GCT * 8 23/24 GCT GTT GCT GCT GCT GCT GCT GCT
99020 GCT * 15 42/45 GCT GCT GCT GCT GGT GAT GCT GCT GCT GCT GTT GCT GCT GCT GCT
105755 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CAA
125936 CAA * 10 27/30 CAA CAA CAA CAA CAG CTA CAA CAA CAA CAG
131427 CTG * 8 23/24 CTG CTG CTG CTG CTG CTG CTT CTG
162508 AGA * 7 19/21 AGA AGA AGA GGA AGA CGA AGA
165832 CAT * 8 22/24 CAT CAT CAT CAT CAT CAT CAA CAG
172615 CAC * 10 27/30 CAC CAT CAC CAC CAC CAC CAT CAC CAC CTC
195794 TCG * 8 22/24 TCG TTC TCG TCG TCG TCG TCG TCG
202014 TGC * 7 20/21 TGC TGC TGC TGC TGC TGC CGC
226901 CAG * 7 19/21 CAG GAG CAG CAG CAG GAG CAG
251491 TGC * 7 19/21 TGC TGC TGC TGT TGC TGC TGT
251529 CTG * 10 27/30 CTG CTG TTG CTG CTT CTG CTG CTG CTG TTG
256135 GCT * 10 27/30 GCT GCT GCT CCT GCT GCT GCT CCT GCT CCT
258782 GCG * 8 22/24 GCG GCG GCG TCG GCG GCG GCG GAG
276624 GCT * 7 19/21 GCT GGA GCT GCT GCT GCT GCT
276689 TGC * 7 19/21 TGC TGC AAC TGC TGC TGC TGC
291460 TGC * 11 30/33 TGC TGC TGC TGC TGC TCC TGC TGC TGC TGT TGA
297169 CCG * 7 19/21 CCG CCG ACG ACG CCG CCG CCG
303625 AGC * 7 19/21 AGC AGC AGG AGC AGC AGG AGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 309388
Total number of repeats detected.............. 26
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGA 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 5 3 2 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 4 2 1 1 0 0 0 0 0 0 0 0 0
GCG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 0 1 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 3 3 0 0 0 0 0 0 0 0 0 0 0
CAC 2 0 2 0 0 0 0 0 0 0 0 0 0
CTG 3 2 1 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 1 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 1
0 AAC + 0 ACA + 1 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 1 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 1 TCC = 1
1 AGC + 0 GCA + 3 CAG + 4 GCT + 3 CTG + 5 TGC = 16
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 1 TCG = 1
0 ACC + 0 CCA + 2 CAC + 0 GGT + 0 GTG + 0 TGG = 2
0 GGC + 1 GCG + 0 CGG + 0 GCC + 1 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7296066|gb|AE003586.1|AE003586 Drosophila melanogaster genomic scaffold 142000013386046 section 12 of 16, complete sequence
Position Repeat Coverage Repeat
42047 CAG * 7 19/21 CAG CAG CAA CAT CAG CAG CAG
42352 GCA * 12 33/36 GCA ACA GCA GCA GCA GCA GCA GCA GCA ACA GCA GTA
42638 CAG * 12 33/36 CAG CTG CAT CAG CAG CAG CAG CAG CAG CAG CAA CAG
74294 TGC * 7 20/21 TGC TGC TGC TGC TTC TGC TGC
115978 ATC * 8 22/24 ATC ACC ATC ATC ATT ATC ATC ATC
128191 TGC * 10 27/30 TGC TCC TCC TGC TGC TGC TGC TGC TGC TCC
132194 TGC * 7 19/21 TGC TGC TGC CGC TGC TGC TGA
133420 TGC * 10 28/30 TGC TGC TGC TGC TGC TGC AGT TGC TGC TGC
134339 AGC * 10 28/30 AGC AGC AGC AGC AGC AGC AGA AGC AGC AGA
142948 CAA * 7 20/21 CAA TAA CAA CAA CAA CAA CAA
158932 CAG * 8 22/24 CAG CAG CAA CAG CAG CAG CAG CCG
159016 CAG * 9 25/27 CAG CAG CAG CAG CAT CAG CAG CAA CAG
162590 GGA * 7 19/21 GGA GCA GGA GCA GGA GGA GGA
195849 TAT * 7 19/21 TAT TAT TTT TAT GAT TAT TAT
208242 CAT * 13 37/39 CAT CAT CGT CAT CAT CAT CAT CAT CAT CAT CAT CAT TAT
248108 GCT * 8 24/24 GCT GCT GCT GCT GCT GCT GCT GCT
296911 GGA * 9 25/27 GGA GGA GGA GGC GGG GGA GGA GGA GGA
-----------------------------------------------------------------------------------------
Total sequence length......................... 306352
Total number of repeats detected.............. 17
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 0 1 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 4 2 2 0 0 0 0 0 0 0 0 0 0
GGA 2 2 0 0 0 0 0 0 0 0 0 0 0
GCA 1 0 1 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 0 0 1 0 0 0 0 0 0 0 0 0
CAG 4 3 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 1 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 0 TGA + 0 GAT + 1 CAT + 1 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 2 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 2
1 AGC + 1 GCA + 4 CAG + 1 GCT + 0 CTG + 4 TGC = 11
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7296031|gb|AE003585.1|AE003585 Drosophila melanogaster genomic scaffold 142000013386046 section 11 of 16, complete sequence
Position Repeat Coverage Repeat
7762 GCT * 7 19/21 GCT GCT GCT GGT GCT GCT GCC
67160 TGT * 7 19/21 TGT TGT TGT TGC TGT TGT CGT
134891 CTC * 7 19/21 CTC CTC CTC CTC CTC GTC GTC
156235 GCT * 10 27/30 GCT GCT GAT GCT GCT GAT GCT GCT GCT GTT
174226 TGC * 7 20/21 TGC TGC TGC TGC TGC TGC AGC
184135 TCA * 10 27/30 TCA TCA TCA TCA TCA TCA TCC TCA CCA CCA
184172 CAT * 10 28/30 CAT CAT CAT CAT GAT CAT CAT CAT CAT CGT
192949 ATT * 7 19/21 ATT ATT ATT ATT ATT TTT TTT
193103 ACA * 9 25/27 ACA ACA ACA ACA GCA GCA ACA ACA ACA
194304 TGT * 11 30/33 TGT TGT TGC TGT TGT TGT TGT TGT TGT TGT GTT
201316 TGA * 11 30/33 TGA TGA TGA TGA TGA TGA TGA TGG TGA TGT TGC
201607 TAA * 7 19/21 TAA TAA TAA TAA TAA TAT TAT
219708 TTG * 7 19/21 TTG TTG TTG TTG TTG TAT TTG
222033 GCT * 7 19/21 GCT GCT GCT GCT TCT GCT GCC
222080 TGC * 16 44/48 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC GTC CTC
240517 CTG * 8 22/24 CTG CAG CTA CTG CTG CTG CTG CTG
240622 GCT * 12 33/36 GCT GAT GCG GCT GCT GCT GCT GCT GCT GTT GCT GCT
240722 TGC * 10 27/30 TGC TGC TGC TGC TGC TGC TGC TGC CGT GGC
240970 TGC * 8 22/24 TGC TGA TGC TGC TGC TGC TGC TGA
241015 TGC * 14 38/42 TGC TGC TGT TGC TGC TGT TGC TGC TGC TGC TGC TGT TGC TGA
291036 TTG * 7 19/21 TTG TTG TTT TTG TTG CTG TTG
292350 CAA * 8 22/24 CAA CAA CAA CAA CAA CTA CAA CCA
-----------------------------------------------------------------------------------------
Total sequence length......................... 306573
Total number of repeats detected.............. 22
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGA 1 0 1 0 0 0 0 0 0 0 0 0 0
TGT 2 1 1 0 0 0 0 0 0 0 0 0 0
TGC 5 2 1 1 1 0 0 0 0 0 0 0 0
TCA 1 0 1 0 0 0 0 0 0 0 0 0 0
GCT 4 2 2 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 0 1 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 1 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 1 CAA + 0 GTT + 2 TTG + 2 TGT = 6
0 ATG + 1 TGA + 0 GAT + 1 CAT + 0 ATC + 1 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 1
0 AGC + 0 GCA + 0 CAG + 4 GCT + 1 CTG + 5 TGC = 10
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295986|gb|AE003584.1|AE003584 Drosophila melanogaster genomic scaffold 142000013386046 section 10 of 16, complete sequence
Position Repeat Coverage Repeat
33242 AAC * 7 19/21 AAC AGC AAC TAC AAC AAC AAC
45413 AGG * 7 19/21 AGG AGG ATG AGG AGA AGG AGG
48336 TGA * 7 19/21 TGA TGA TGA TGA TGA TGA GGC
61642 GAT * 7 19/21 GAT GGT CAT GAT GAT GAT GAT
63378 ATG * 7 20/21 ATG ATG ATG ATG ATG TTG ATG
67984 ATC * 7 19/21 ATC ATC CTC ATC ATC GTC ATC
69428 TGC * 7 19/21 TGC TGC TGC TGC CGC TGC CGC
69476 GAG * 7 19/21 GAG GAG GAA GAG GAG GAG GAA
71587 CAG * 10 27/30 CAG CAG CAG CAA CAG CAG CAG CAG CAA CAA
71659 CAG * 7 19/21 CAG TTG CAG CAG CAG CAG CAG
107636 AAT * 8 22/24 AAT AAT AAT AAT GAT AAT AAT AAC
110009 CAG * 7 19/21 CAG CAG CAG AAG TAG CAG CAG
111183 TGC * 8 22/24 TGC TGC TGT TGC TGC TAC TGC TGC
128011 GCA * 12 33/36 GCA GCA GCA GCA GCA GCA GCA ACA TCA GCA GCA ACA
128372 GCA * 8 22/24 GCA GCA GCA GCA GCA GGA GCA ACA
128405 GCA * 12 33/36 GCA GCA ACA GCA GCA GCA GCA GCA GCA GCA ACA ACA
129398 ATT * 7 19/21 ATT ATT ATT ATT ATT ATT TAT
157622 GCT * 7 19/21 GCT CCT GCT GCT CCT GCT GCT
179640 TAA * 7 19/21 TAA TAA TAA TAA TAA CAG TAA
188160 CCA * 7 19/21 CCA CAA TCA CCA CCA CCA CCA
198004 GAT * 8 22/24 GAT GGT GAT GAT GAT GAT GTT GAT
207162 ATC * 7 19/21 ATC ATC ATC ATC GCC ATC ATC
215491 GAT * 7 19/21 GAT GAT GGT GAT GGT GAT GAT
245490 CCA * 7 19/21 CCA CCA CCA CCA CGA CGA CCA
246287 CAG * 10 27/30 CAG CAG CAG CAG CAG CAG CCG CAG AAG AAG
258528 TGT * 9 25/27 TGT TCT CGT TGT TGT TGT TGT TGT TGT
272248 GAT * 7 20/21 GAT GAT GAT GAC GAT GAT GAT
283693 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC TGT TGG
317495 GTT * 8 22/24 GTT GTT GTT GTT GTT GTT GTT GCA
-----------------------------------------------------------------------------------------
Total sequence length......................... 324484
Total number of repeats detected.............. 29
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 2 2 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 3 3 0 0 0 0 0 0 0 0 0 0 0
GAT 4 4 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 3 1 2 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 4 2 2 0 0 0 0 0 0 0 0 0 0
CCA 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 1 TAA + 1 ATT + 0 TTA + 0 TAT = 3
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 0 CAA + 1 GTT + 0 TTG + 1 TGT = 3
1 ATG + 1 TGA + 4 GAT + 0 CAT + 2 ATC + 0 TCA = 8
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 2
0 AGC + 3 GCA + 4 CAG + 1 GCT + 0 CTG + 3 TGC = 11
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 2 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295946|gb|AE003583.1|AE003583 Drosophila melanogaster genomic scaffold 142000013386046 section 9 of 16, complete sequence
Position Repeat Coverage Repeat
4555 TGC * 12 33/36 TGC TGC TGC TTC TGC TGC TTC TGC TGC TTC TGC TGC
7969 CAT * 8 22/24 CAT CAT CAG CAA CAT CAT CAT CAT
20332 GCA * 7 19/21 GCA GCA GCA GCA GCA ACA ACA
35326 TCC * 7 19/21 TCC TCC TCC TCC TGT TCC TCC
37608 GAC * 7 19/21 GAC GAC GAC GAC GAC GAT GAT
37716 TGC * 7 19/21 TGC TGA TGC TGC TTC TGC TGC
45568 GAT * 7 19/21 GAT GAT GAC GAT GAC GAT GAT
49940 GCA * 7 19/21 GCA GCA GCA TCT GCA GCA GCA
50699 CCT * 8 23/24 CCT CCT CCT CCA CCT CCT CCT CCT
52586 GTC * 7 19/21 GTC GTC GTT GTC GTC GTC CTC
58153 ATA * 7 20/21 ATA ATA ATA ATA ATA ATA ATG
70209 TTC * 7 20/21 TTC TTC TTC TTC TTC TTC TTG
89359 AGA * 7 19/21 AGA AGA AGA AGA AAA AGA AGT
89978 GCT * 7 19/21 GCT GCT GCT GCT GGT GTT GCT
104600 GCT * 8 22/24 GCT GAT GCT GCT GCT GCT GCT GCG
108580 GCA * 7 19/21 GCA CCA GCA GCA GCA GCA ACA
108706 CAG * 11 30/33 CAG CAG CAG CAG CAG CAG CAG GAG CAA CAA CAG
110877 TGA * 8 22/24 TGA TGC TCA TGA TGA TGA TGA TGA
133932 CGA * 7 20/21 CGA CGA CGA CGA CGA GGA CGA
155858 CTG * 8 22/24 CTG CTG CTG CTG TTG CTG CTG CTC
186097 TAT * 7 19/21 TAT TAC TAT TAT TAT TAT TTT
194248 ATG * 7 19/21 ATG ATG ATG ATG ATG GTG GTG
210691 TGC * 7 19/21 TGC TGG TGC TGC TGC TGC TGG
253830 CCA * 11 30/33 CCA CCA CCA CCA CCA CCA CCA TCA ACA TCA CCA
267012 TGT * 7 19/21 TGT TCT TGT TGT TGC TGT TGT
289529 GAT * 7 19/21 GAT GAT GAT GAT GAT GGT GAA
298003 GCA * 7 19/21 GCA GCA GCA GCC GCC GCA GCA
-----------------------------------------------------------------------------------------
Total sequence length......................... 303356
Total number of repeats detected.............. 27
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 3 2 1 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 2 2 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 4 4 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 0 1 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CGA 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 0 1 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 2
0 AAG + 1 AGA + 0 GAA + 0 CTT + 1 TTC + 0 TCT = 2
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 1 TGT = 1
1 ATG + 1 TGA + 2 GAT + 1 CAT + 0 ATC + 0 TCA = 5
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 1 CCT + 0 CTC + 1 TCC = 2
0 AGC + 4 GCA + 1 CAG + 2 GCT + 1 CTG + 3 TGC = 11
0 ACG + 1 CGA + 1 GAC + 0 CGT + 1 GTC + 0 TCG = 3
0 ACC + 1 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295900|gb|AE003582.1|AE003582 Drosophila melanogaster genomic scaffold 142000013386046 section 8 of 16, complete sequence
Position Repeat Coverage Repeat
27850 GAC * 7 19/21 GAC GAT GAC GAC GAC GAC GTC
44821 CTA * 8 22/24 CTA CTA CTA CTA CTA CTA TTA CTG
73101 TCA * 8 22/24 TCA TCA TTA TCA TCA TCA TCA TCT
83444 TTC * 7 19/21 TTC TTC TTG TTC TTC TTC TTT
95584 AAT * 12 33/36 AAT AAT AAT AAT AAT AAT AAC AAT AAC AAT AAC AAT
96326 GAT * 7 19/21 GAT GAT GAT GAT GAT CAT CAT
105701 CAT * 14 40/42 CAT CAC CAT CCT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
131229 AGC * 15 42/45 AGC AGC AGT AGC AGC AGC AGC AGC AGC AGC AGC AGC AGC AGC GCC
166337 TAT * 8 23/24 TAT TAT TAT TAT TAT TAT TAT GAT
223204 CCT * 7 19/21 CCT CCT CCT CGT GCT CCT CCT
242095 CAT * 10 28/30 CAT CAT CAT CAC CAT CAT CAT CAT CAT CAC
246838 CAG * 7 19/21 CAG CAG CCG CAG CAG CAA CAG
-----------------------------------------------------------------------------------------
Total sequence length......................... 295312
Total number of repeats detected.............. 12
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 0 1 0 0 0 0 0 0 0 0 0 0
AGC 1 0 0 1 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 2 0 1 1 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTA 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 1 TTC + 0 TCT = 1
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 1 GAT + 2 CAT + 0 ATC + 1 TCA = 4
0 AGT + 0 GTA + 0 TAG + 0 ACT + 1 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 1 CCT + 0 CTC + 0 TCC = 1
1 AGC + 0 GCA + 1 CAG + 0 GCT + 0 CTG + 0 TGC = 2
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295843|gb|AE003581.1|AE003581 Drosophila melanogaster genomic scaffold 142000013386046 section 7 of 16, complete sequence
Position Repeat Coverage Repeat
9591 ACC * 9 26/27 ACC ACC ACC ACC ACC ACC AGC ACC ACC
47803 AAG * 7 20/21 AAG AGG AAG AAG AAG AAG AAG
48691 TGA * 8 22/24 TGA TGA TGA TGA TGA CGT TGA TGA
57725 GCT * 7 19/21 GCT GCT GCT GCT GCT TCA GCT
110697 CTT * 7 19/21 CTT CTC CTT CTT CTT TTT CTT
115981 TGC * 8 22/24 TGC TGC TAC TGC TGC TGC TGC TGG
121457 TGC * 10 27/30 TGC TGC TGC TGC TGC TGC TGC TGG TGG GGC
122425 TGT * 7 19/21 TGT TGC TGC TGT TGT TGT TGT
122941 TGC * 8 23/24 TGC TGC TGC TGC TGC TGC TGC TGT
123099 CTG * 7 19/21 CTG TTG CTG TTG CTG CTG CTG
172724 CTG * 8 22/24 CTG CTG CAG CTG CAG CTG CTG CTG
172820 CGA * 7 19/21 CGA CGA CGA CGA TGA CGA GGA
175120 GTT * 7 19/21 GTT ATT GTT ATT GTT GTT GTT
175143 TAT * 7 19/21 TAT TAT TAT TAT TAT TGT TGT
182562 TTG * 14 38/42 TTG TTT TTG TTG TTG TTG TGG TTG TTG TTG TTG TTC TTG TCG
187807 TCC * 7 19/21 TCC TCC TCC TCA CCC TCC TCC
188286 CTG * 10 27/30 CTG CTG CTG CTG TTG CTG CTG CTG CAG TTG
191269 TTG * 7 19/21 TTG TTG TGG TTG TTG TTA TTG
198428 GTG * 8 22/24 GTG GTG TTG GTG GTG GTG GTG GTT
206638 TGC * 7 20/21 TGC TGC CGC TGC TGC TGC TGC
210501 TGC * 7 19/21 TGC TGC TGC CGC TGC TGC TGA
218233 GAT * 8 22/24 GAT GGT GAT GAT GAT GAT GAT GGT
219643 TTA * 11 30/33 TTA TTG TTA TTA TTA TTA TTA TTA TTG TTG TTA
221499 TGC * 14 40/42 TGC TGC CAC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
222495 CGT * 8 22/24 CGT CGT CGT CCT CGT CGT CGT CCT
227577 CAA * 11 30/33 CAA CAA CAA AAA CAA CAA CAA CAA CAA CAC TAA
245784 TGC * 7 20/21 TGC TGG TGC TGC TGC TGC TGC
246194 TGT * 7 19/21 TGT AGT TGT TGA TGT TGT TGT
247501 GTT * 7 19/21 GTT GTT GTT GTT GTT GAT TTT
250314 TTG * 7 19/21 TTG TTG TTG TTG TGA TTG TTG
297717 CTG * 7 20/21 CTG CTG CTC CTG CTG CTG CTG
303676 TAT * 8 22/24 TAT TAT TAT TAT TAT TAT TAC TTT
-----------------------------------------------------------------------------------------
Total sequence length......................... 306436
Total number of repeats detected.............. 32
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 2 2 0 0 0 0 0 0 0 0 0 0 0
TTA 1 0 1 0 0 0 0 0 0 0 0 0 0
TTG 3 2 0 1 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 7 5 1 1 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 2 2 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 0 1 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 4 3 1 0 0 0 0 0 0 0 0 0 0
CGA 1 1 0 0 0 0 0 0 0 0 0 0 0
CGT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 2 TAT = 3
1 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 2
0 AAC + 0 ACA + 1 CAA + 2 GTT + 3 TTG + 2 TGT = 8
0 ATG + 1 TGA + 1 GAT + 0 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 1 TCC = 1
0 AGC + 0 GCA + 0 CAG + 1 GCT + 4 CTG + 7 TGC = 12
0 ACG + 1 CGA + 0 GAC + 1 CGT + 0 GTC + 0 TCG = 2
1 ACC + 0 CCA + 0 CAC + 0 GGT + 1 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295809|gb|AE003580.1|AE003580 Drosophila melanogaster genomic scaffold 142000013386046 section 6 of 16, complete sequence
Position Repeat Coverage Repeat
1254 TGC * 8 23/24 TGC TGC TGC TGC TGC TGC TGC TGG
14216 TGC * 8 22/24 TGC TGC GGC TGC TGC TGC TGC TGA
14710 GCT * 7 19/21 GCT GAT GCT GCT GCT GCT CCT
14845 GCT * 7 19/21 GCT GCG GCT GCT TCT GCT GCT
68757 CAA * 9 25/27 CAA CAA CCA CAA CAA CAA GAA CAA CAA
69202 CAT * 7 19/21 CAT CAT CAT CAT CAT CAG CCT
78406 CAG * 7 19/21 CAG CAG CAA CAT CAG CAG CAG
78466 CAG * 8 22/24 CAG CAG TCG CAG CAG CAG CAG CAG
78597 AGC * 10 27/30 AGC AGC AGC AGC AGC AGC AGC AAC AAC AAC
78988 GCA * 7 21/21 GCA GCA GCA GCA GCA GCA GCA
154686 CAT * 7 20/21 CAT CAG CAT CAT CAT CAT CAT
221279 ATA * 18 50/54 ATA ATA ACA ATA ATA ATA ACA ATA ATA ATA ATA ATA TTA ATA ATA ATT ATA ATA
230149 AGC * 10 27/30 AGC AGC AGC AGG AGC AGC AGG AGC AGC AGA
273104 TTG * 7 19/21 TTG TTG TTA TTC TTG TTG TTG
283224 CAC * 8 22/24 CAC CAC CAC CAC CAC CAC CAT CAG
-----------------------------------------------------------------------------------------
Total sequence length......................... 295223
Total number of repeats detected.............. 15
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 1 0 0 0 1 0 0 0 0 0 0 0 0
AGC 2 0 2 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 1 CAA + 0 GTT + 1 TTG + 0 TGT = 2
0 ATG + 0 TGA + 0 GAT + 2 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
2 AGC + 1 GCA + 2 CAG + 2 GCT + 0 CTG + 2 TGC = 9
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295765|gb|AE003579.1|AE003579 Drosophila melanogaster genomic scaffold 142000013386046 section 5 of 16, complete sequence
Position Repeat Coverage Repeat
37433 AAT * 11 30/33 AAT AAT AAT AAT AAT AAT AAT AAC AAT ATT AAA
63366 TGA * 7 19/21 TGA TAA TGA CGA TGA TGA TGA
70678 GGA * 7 20/21 GGA GGA GGA GGA GGA GGT GGA
93608 GAT * 7 19/21 GAT GAT GAT GAT GAT GAT TTT
95675 CAC * 7 19/21 CAC CAG CAC CAC CAC CAC AAC
104488 TGT * 7 19/21 TGT TGT TGT TGT TGT TTT GGT
108861 GCA * 7 19/21 GCA GCA TCA TCA GCA GCA GCA
128808 CAG * 10 28/30 CAG CGG CAG AAG CAG CAG CAG CAG CAG CAG
128841 CAG * 11 30/33 CAG CAG CAG CAG CAG CAG CAG CAG CAA CGG CAA
129278 CAG * 8 22/24 CAG CGG CAG CAG CAG CAG CAG CAA
130059 CAG * 7 19/21 CAG CAG CAG CAA CAA CAG CAG
130109 GCA * 7 19/21 GCA GAT GCA GCA GCA GCA GCA
130239 CAG * 8 22/24 CAG CAG CAA CAG CAG CAG CAG CAA
137060 TCT * 7 21/21 TCT TCT TCT TCT TCT TCT TCT
137663 TTG * 8 22/24 TTG TTA TTG TTT TTG TTG TTG TTG
139469 CAT * 7 19/21 CAT CAT CAT CAT CAG CAT CAG
155833 TGC * 8 22/24 TGC CGC TGC TGC TGC TGC AGC TGC
166187 TGT * 7 19/21 TGT TGT TGT TAT TGT TGT TTT
187916 ATT * 8 22/24 ATT GTT TTT ATT ATT ATT ATT ATT
201644 CAA * 7 19/21 CAA CAA CAG TAA CAA CAA CAA
201894 CAA * 7 19/21 CAA CAC AAA CAA CAA CAA CAA
244197 AGC * 7 20/21 AGC AGC AGC AGC GGC AGC AGC
252904 GCA * 8 22/24 GCA GCA GCA GCA GCA GCA GCC ACA
-----------------------------------------------------------------------------------------
Total sequence length......................... 304383
Total number of repeats detected.............. 23
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 0 1 0 0 0 0 0 0 0 0 0 0
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 3 3 0 0 0 0 0 0 0 0 0 0 0
CAA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 5 3 2 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 1 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 1 TCT = 1
0 AAC + 0 ACA + 2 CAA + 0 GTT + 1 TTG + 2 TGT = 5
0 ATG + 1 TGA + 1 GAT + 1 CAT + 0 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 1
1 AGC + 3 GCA + 5 CAG + 0 GCT + 0 CTG + 1 TGC = 10
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295742|gb|AE003578.1|AE003578 Drosophila melanogaster genomic scaffold 142000013386046 section 4 of 16, complete sequence
Position Repeat Coverage Repeat
37915 TGA * 7 19/21 TGA TGG TGA TGA TGG TGA TGA
126775 AGG * 7 19/21 AGG AGG AGG AGT TGG AGG AGG
129019 GCA * 7 19/21 GCA GCA GCA GCA ACA GCG GCA
156405 CAT * 7 20/21 CAT CAT CAT CAT CAC CAT CAT
161445 CAT * 8 22/24 CAT CAT CAT CAT CCT CAT CCT CAT
169389 CCA * 7 19/21 CCA CCA CCA CCA CCA CCT CCT
187399 TCA * 7 20/21 TCA TCA TTA TCA TCA TCA TCA
217504 GGC * 7 20/21 GGC GGC GGC GGC AGC GGC GGC
225954 GCT * 10 28/30 GCT GCT GCT GCT GCT GCT GCT GCT GGT CCT
227703 GCA * 7 19/21 GCA GCA GCA GCA CCA ACA GCA
235967 TGA * 7 19/21 TGA TGA TGA TGA TGC TGA CGA
263896 GCC * 7 19/21 GCC GCC GCC GCA GCC GCC TCC
264230 CCG * 7 19/21 CCG CCG CCG CTG CCG CCG CCA
270176 GAT * 7 19/21 GAT GAC GAT GAT GAT GAT GGT
293414 TGC * 11 31/33 TGC TGC TGC TGC TGC TGT TGT TGC TGC TGC TGC
293653 CTG * 11 30/33 CTG CTG CTG CTG TTG CTG ATG CTG CTG CTG CGG
306555 AAC * 11 32/33 AAC AAC AAC AAC AAC AAC AAC AAC TAC AAC AAC
-----------------------------------------------------------------------------------------
Total sequence length......................... 307748
Total number of repeats detected.............. 17
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 0 1 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 1 0 1 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
GCT 1 0 1 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 2 2 0 0 0 0 0 0 0 0 0 0 0
CTG 1 0 1 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 2 TGA + 1 GAT + 2 CAT + 0 ATC + 1 TCA = 6
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 1
0 AGC + 2 GCA + 0 CAG + 1 GCT + 1 CTG + 1 TGC = 5
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 1 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 1
1 GGC + 0 GCG + 0 CGG + 1 GCC + 1 CCG + 0 CGC = 3
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295725|gb|AE003577.1|AE003577 Drosophila melanogaster genomic scaffold 142000013386046 section 3 of 16, complete sequence
Position Repeat Coverage Repeat
5646 GAC * 7 20/21 GAC GAC GAC GAC GAC GAC GGC
42100 GCA * 10 28/30 GCA GCT ACA GCA GCA GCA GCA GCA GCA GCA
60389 GTC * 10 27/30 GTC GTC GTC CTT GTC GTC GTC GTC GTC GTA
62676 CTG * 11 30/33 CTG CTG CTG CTG CTG CTG CTT TTG CTG CTG CTA
65573 GGT * 14 39/42 GGT AGT GGT AGT GGT GGT GGT GGT GGT GGT GGT GGT GTT GGT
111177 CAG * 7 19/21 CAG CCG CAG CAG CAG CAG CAA
111492 CAG * 7 20/21 CAG CAG CAG CAG CAG CAG CAC
121993 TAC * 8 23/24 TAC TAC TAC TAC TAC TAC TAC TAT
128280 TAT * 7 19/21 TAT TAT TAT TAT TAT TAT ATT
149623 TGT * 8 23/24 TGT TGT CGT TGT TGT TGT TGT TGT
166275 GCT * 7 19/21 GCT GCT GCA GCT GCA GCT GCT
181761 TAC * 7 19/21 TAC TAA TAC TAC TAC TAA TAC
188269 GTT * 7 19/21 GTT GTT GTC GTT GGT GTT GTT
188414 TTG * 8 22/24 TTG TTG TTG TTG TGG TTG TGG TTG
188474 TTG * 7 19/21 TTG TGG TTG TTG TTG TCG TTG
257408 CAG * 7 19/21 CAG CAG CAG CAG CAA CAG CAA
257679 AGC * 7 19/21 AGC AGC AGC AGC AGC AGC TGG
257796 AGA * 7 19/21 AGA AGA AGA AGA AGA TAA AGA
258217 CAA * 7 19/21 CAA CAA CAA CAA CAA CCA CAC
-----------------------------------------------------------------------------------------
Total sequence length......................... 267576
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGA 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TAC 2 2 0 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTC 1 0 1 0 0 0 0 0 0 0 0 0 0
GGT 1 0 0 1 0 0 0 0 0 0 0 0 0
GCA 1 0 1 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 3 3 0 0 0 0 0 0 0 0 0 0 0
CTG 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 1
0 AAG + 1 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 1
0 AAC + 0 ACA + 1 CAA + 1 GTT + 2 TTG + 1 TGT = 5
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 2 TAC = 2
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 1 GCA + 3 CAG + 1 GCT + 1 CTG + 0 TGC = 7
0 ACG + 0 CGA + 1 GAC + 0 CGT + 1 GTC + 0 TCG = 2
0 ACC + 0 CCA + 0 CAC + 1 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295692|gb|AE003576.1|AE003576 Drosophila melanogaster genomic scaffold 142000013386046 section 2 of 16, complete sequence
Position Repeat Coverage Repeat
2031 AAT * 14 39/42 AAT AAT AAC AAT AAT AAT AAT AAT ATT AAT AAT AAT TAT AAT
9157 AAT * 14 39/42 AAT AAT AAC AAT AAT AAT AAT AAT ATT AAT AAT AAT TAT AAT
20265 AAT * 7 19/21 AAT AAT AAT AAT AAT AAC AAA
38504 CAT * 8 23/24 CAT CAT CAT CAT CAT CAT CGT CAT
141801 ACC * 7 19/21 ACC TGC ACC ACC ACC ACC ACC
162769 AGC * 7 20/21 AGC AGC AGC AGC AGC AGC AGA
194469 AAC * 8 22/24 AAC AAC CAC AAG AAC AAC AAC AAC
209454 GAC * 8 22/24 GAC GAC GAC GAC GAC CAC AAC GAC
213462 GGT * 8 22/24 GGT GGC GGT GGC GGT GGT GGT GGT
267358 TGC * 7 19/21 TGC TGC TGC TGC TAC TGC GGC
269540 TGC * 7 19/21 TGC TCC TGC TTC TGC TGC TGC
303540 CAG * 11 30/33 CAG TAG CAG CAG CAG CAG CAG CAG CAG CAG TGG
-----------------------------------------------------------------------------------------
Total sequence length......................... 304634
Total number of repeats detected.............. 12
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 3 1 0 2 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
3 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 3
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 0 GCA + 1 CAG + 0 GCT + 0 CTG + 2 TGC = 4
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 1
1 ACC + 0 CCA + 0 CAC + 1 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295650|gb|AE003575.1|AE003575 Drosophila melanogaster genomic scaffold 142000013386046 section 1 of 16, complete sequence
Position Repeat Coverage Repeat
56257 CGC * 7 19/21 CGC CAG CGC CGC CGC CGC CGC
56913 CAA * 7 19/21 CAA CAG CAC CAA CAA CAA CAA
56934 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAG GAA
59650 CTC * 8 22/24 CTC CTC CTC CTC CTA CTC ATC CTC
73003 TGC * 12 33/36 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGA TGA TGA
76494 GCA * 8 22/24 GCA GAA GCA GCA GCA ACA GCA GCA
90563 GTT * 8 23/24 GTT GTT GTT ATT GTT GTT GTT GTT
91861 TTG * 7 19/21 TTG TTC TTG TTG TTG TTG CTG
93151 GCC * 7 19/21 GCC GCA GCC GCC GCT GCC GCC
94233 GCA * 7 19/21 GCA GCA CCA ACA GCA GCA GCA
95742 CAT * 7 19/21 CAT CAT TAT CAT TAT CAT CAT
99259 GCT * 8 22/24 GCT GCT GCT GCA GGT GCT GCT GCT
99524 TGT * 7 19/21 TGT TGT TGT TGT TGC TGC TGT
103038 CCA * 8 22/24 CCA CCG CCA CCA CCA CCA CCA ACA
116905 GCA * 7 19/21 GCA ACA GCA ACA GCA GCA GCA
145513 CGT * 7 19/21 CGT CTT CCT CGT CGT CGT CGT
149297 GAT * 7 19/21 GAT GGT GAT GAT GAT GAT GTT
164879 TGC * 8 22/24 TGC TGC TGA TGC TGC TGC TGT TGC
179142 CAC * 8 22/24 CAC CAC CAC CAC CAC CAC CAC TGC
183944 GCT * 7 20/21 GCT GCT GCT GTT GCT GCT GCT
282188 CAG * 10 28/30 CAG CAG CAG CAG CAG CAG AAG CAG CTG CAG
284716 CAT * 7 19/21 CAT CAT CAT CAT AAT CAT AAT
290484 TAG * 7 19/21 TAG GAG AAG TAG TAG TAG TAG
290506 AGT * 8 22/24 AGT AGT AGT AGT AGC AGG AGT AGT
290533 AGT * 38 103/114 AGT AGT AGT AGT AGT AGT AGT AGT AGT AGG AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGG AGT AGT AGT AGT TGT AGT ACG AGT AGT AGT AGG GCT TAA
299021 TCC * 7 19/21 TCC TCA TCC TCA TCC TCC TCC
302346 AGC * 8 22/24 AGC AGC AGC GGC AGC AGC AGC AAC
305599 CAT * 7 19/21 CAT CAT CGT CAT CAT CAT CTT
325169 GCA * 7 19/21 GCA GCA ACA GCA GCA GCA GCG
325311 GCT * 8 22/24 GCT GCT GTT GCT TCT GCT GCT GCT
-----------------------------------------------------------------------------------------
Total sequence length......................... 327242
Total number of repeats detected.............. 30
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGT 2 1 0 0 0 0 0 0 0 0 0 1 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAG 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 1 1 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 4 4 0 0 0 0 0 0 0 0 0 0 0
GCT 3 3 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 3 3 0 0 0 0 0 0 0 0 0 0 0
CAG 2 1 1 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CGT 1 1 0 0 0 0 0 0 0 0 0 0 0
CGC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 1 CAA + 1 GTT + 1 TTG + 1 TGT = 4
0 ATG + 0 TGA + 1 GAT + 3 CAT + 0 ATC + 0 TCA = 4
2 AGT + 0 GTA + 1 TAG + 0 ACT + 0 CTA + 0 TAC = 3
0 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 1 TCC = 2
1 AGC + 4 GCA + 2 CAG + 3 GCT + 0 CTG + 2 TGC = 12
0 ACG + 0 CGA + 0 GAC + 1 CGT + 0 GTC + 0 TCG = 1
0 ACC + 1 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 1 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7316108|gb|AE002690.1|AE002690 Drosophila melanogaster genomic scaffold 142000013386055, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7298777|gb|AE003670.1|AE003670 Drosophila melanogaster genomic scaffold 142000013386055 section 63 of 63, complete sequence
Position Repeat Coverage Repeat
4658 TGC * 7 20/21 TGC TGC TGG TGC TGC TGC TGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 117404
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 1 TGC = 1
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298740|gb|AE003669.1|AE003669 Drosophila melanogaster genomic scaffold 142000013386055 section 62 of 63, complete sequence
Position Repeat Coverage Repeat
5270 CTG * 8 22/24 CTG CTG CTG CTG CTG GTG CTG CTT
53615 CAT * 7 19/21 CAT CAT CAT TAC CAT CAT CAT
80579 ATA * 7 19/21 ATA ATA ATA ATA ACA ATA ATG
96825 GAG * 7 19/21 GAG AAA GAG GAG GAG GAG GAG
118819 CAA * 12 33/36 CAA CAA CAA CAA CAA CAA CAA CAA CAA CTA CAG TAA
152683 GAT * 7 19/21 GAT GAT GAT GAT GAT GAA GAG
154579 AGG * 7 19/21 AGG AGG AGG AGG AGG TGG AAG
200281 CAT * 7 19/21 CAT CAT CAT CGC CAT CAT CAT
247368 ATT * 7 19/21 ATT ACG ATT ATT ATT ATT ATT
-----------------------------------------------------------------------------------------
Total sequence length......................... 272526
Total number of repeats detected.............. 9
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 0 1 0 0 0 0 0 0 0 0 0 0
CAT 2 2 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 1 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 1 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 0 TGA + 1 GAT + 2 CAT + 0 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 2
0 AGC + 0 GCA + 0 CAG + 0 GCT + 1 CTG + 0 TGC = 1
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298706|gb|AE003668.1|AE003668 Drosophila melanogaster genomic scaffold 142000013386055 section 61 of 63, complete sequence
Position Repeat Coverage Repeat
15230 CAA * 7 19/21 CAA AAA CAA CAA CCA CAA CAA
28480 CAA * 12 34/36 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA TAG
28529 AAC * 7 19/21 AAC AAC AAC AAC AAT AAC AAT
34138 GAG * 12 34/36 GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GGA
39112 AGG * 7 19/21 AGG AGG CGT AGG AGG AGG AGG
39930 CAA * 7 19/21 CAA AAG CAA CAA CAA CAA CAA
59336 CAA * 8 23/24 CAA CAA CAA CAA CAA CAA CAG CAA
66663 GCA * 11 30/33 GCA GCA GCG GCA GCA GCA ACA GCA GCA GCA ACA
198336 CAA * 8 22/24 CAA CAA CAA CAA CAA CAA TAG CAA
204229 GAT * 8 22/24 GAT GAC GCT GAT GAT GAT GAT GAT
210172 GTT * 10 27/30 GTT GTT GTT GTT GTT GTT GTT GCT GCT GCT
210326 TCG * 7 19/21 TCG CCG TCG TTG TCG TCG TCG
214230 GCA * 8 22/24 GCA GCA GCA GCA GCA GCA TCA GGA
254462 TAA * 7 20/21 TAA TAA AAA TAA TAA TAA TAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 267300
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 0 1 0 0 0 0 0 0 0 0 0 0
GTT 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 2 1 1 0 0 0 0 0 0 0 0 0 0
CAA 5 4 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 5 CAA + 1 GTT + 0 TTG + 0 TGT = 7
0 ATG + 0 TGA + 1 GAT + 0 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 2
0 AGC + 2 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 2
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 1 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298684|gb|AE003667.1|AE003667 Drosophila melanogaster genomic scaffold 142000013386055 section 60 of 63, complete sequence
Position Repeat Coverage Repeat
4681 CAT * 9 25/27 CAT CAT CAT CAT CAT TAT CAT CAT CTT
19453 TCG * 11 30/33 TCG TCG TCG TCG TCG TCT TCG TCG TCC TCG TCA
43026 CTG * 7 19/21 CTG CTC CTG CTC CTG CTG CTG
74216 AAT * 11 30/33 AAT AAT AAT AAT AAT AAT AAT AGT ATT TAT AAT
79538 TGC * 8 22/24 TGC TGC TGC TGT TGC TGC CGC TGC
79740 CTG * 8 22/24 CTG CGG CCG CTG CTG CTG CTG CTG
150995 ATG * 7 19/21 ATG ATA ATG ATG ATG TTG ATG
181195 TGC * 8 22/24 TGC TGC TGC TGC TGA TGC TGC TCC
186878 TGC * 7 21/21 TGC TGC TGC TGC TGC TGC TGC
192479 AGG * 7 19/21 AGG AGG AGG AGG AGG ATG TGG
205610 TGC * 7 19/21 TGC TGT TGC TGC TGC TGC TGT
206102 TGC * 12 33/36 TGC TGC TGC TGC TGG TGC TGC TGC TGC TGT TGC TGT
206141 TGC * 8 22/24 TGC TGC TGC TGT TGC TGT TGC TGC
206551 CTG * 11 30/33 CTG CTG CTG CTG CTG CTG CTG TTG TTG TTG CTG
206585 TGC * 8 23/24 TGC TGC TGC TGC TGC TGC TGC TGG
207345 GCT * 9 25/27 GCT GCT GCT GCT GCT GAT GCT GCT CCT
207375 GCT * 11 30/33 GCT TCT GCT GCT GCT GCT GTT GCT GCT GCT GTT
210616 CTC * 8 23/24 CTC CTC CTC CTC CTC CTC CTC CTG
225674 TGG * 12 34/36 TGG TGG TGA TGG TGG TGG TGG TGG TGG TGG TGG TGC
230645 ATG * 7 19/21 ATG ATG TTG ATG GTG ATG ATG
234282 GGT * 7 20/21 GGT GGA GGT GGT GGT GGT GGT
240632 AAC * 7 20/21 AAC AAC AAC AAC AAC AGC AAC
-----------------------------------------------------------------------------------------
Total sequence length......................... 263704
Total number of repeats detected.............. 22
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 0 1 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 2 2 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 7 6 1 0 0 0 0 0 0 0 0 0 0
TCG 1 0 1 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 2 1 1 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 3 2 1 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 1
2 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 2
0 AGC + 0 GCA + 0 CAG + 2 GCT + 3 CTG + 7 TGC = 12
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 1 TCG = 1
0 ACC + 0 CCA + 0 CAC + 1 GGT + 0 GTG + 1 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298667|gb|AE003666.1|AE003666 Drosophila melanogaster genomic scaffold 142000013386055 section 59 of 63, complete sequence
Position Repeat Coverage Repeat
111380 CAT * 7 19/21 CAT CAT CAT CAT AAT CAT TAT
136760 CAG * 8 22/24 CAG CAG CAG CAT CTG CAG CAG CAG
167581 TAA * 7 21/21 TAA TAA TAA TAA TAA TAA TAA
179294 AAT * 8 22/24 AAT AAT AAT AAT AAT AAT AAT GTT
201629 GCA * 7 19/21 GCA GCA GCA GCA GCG TCA GCA
206590 GCT * 7 19/21 GCT GCT GCT GCT GCC GCC GCT
206791 GGC * 7 19/21 GGC GGC GGC GGC GGC AGC GGT
216814 CAG * 10 27/30 CAG CAG CAG CAG CAG CAG CAG TTG CAG CTG
246347 GCT * 7 19/21 GCT GCT GCT TCT GCT GCT TCT
-----------------------------------------------------------------------------------------
Total sequence length......................... 247952
Total number of repeats detected.............. 9
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
GGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 1 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 1 TAA + 0 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 1 GCA + 2 CAG + 2 GCT + 0 CTG + 0 TGC = 5
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
1 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298648|gb|AE003665.1|AE003665 Drosophila melanogaster genomic scaffold 142000013386055 section 58 of 63, complete sequence
Position Repeat Coverage Repeat
20484 TAG * 10 28/30 TAG TAG TAG TAA TAG TAG TAG TAG TAG TTG
23015 CGA * 7 19/21 CGA TGA CGA CGA CGA TGA CGA
55973 CAG * 7 19/21 CAG CAG CAG CAG CAG CAG TTG
78161 CAG * 7 19/21 CAG CAG CAA CAA CAG CAG CAG
108925 AGT * 8 22/24 AGT AGT AGT AGT AGT AGT AGT GCT
147326 GCA * 7 20/21 GCA GCA GCA GCA GGA GCA GCA
-----------------------------------------------------------------------------------------
Total sequence length......................... 205045
Total number of repeats detected.............. 6
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TAG 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CGA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
1 AGT + 0 GTA + 1 TAG + 0 ACT + 0 CTA + 0 TAC = 2
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 1 GCA + 2 CAG + 0 GCT + 0 CTG + 0 TGC = 3
0 ACG + 1 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298621|gb|AE003664.1|AE003664 Drosophila melanogaster genomic scaffold 142000013386055 section 57 of 63, complete sequence
Position Repeat Coverage Repeat
12109 TCC * 8 22/24 TCC TCC TCC TCC TCG TCC TCC TGC
23996 TGC * 7 19/21 TGC TGT TGT TGC TGC TGC TGC
24017 TGT * 11 30/33 TGT TGT TGT TGC TGC TGT TGT TGT TGT TGT TGA
24335 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC TGA GGC
24370 CTG * 12 33/36 CTG CTG ATG CTG CTG CTG CTG CTG TTG CTG CTG CAG
60896 TCA * 8 22/24 TCA TCA TCA TCA TCA TCC TCA TCC
107855 TCA * 8 24/24 TCA TCA TCA TCA TCA TCA TCA TCA
123546 TTA * 7 21/21 TTA TTA TTA TTA TTA TTA TTA
139317 ATG * 14 38/42 ATG ACG ATG ATG AAG ATG ATG ATG ATG ATG ATG ATG ATC GTG
155196 CAG * 11 30/33 CAG CAG GAG CAG CAG CAG CAG CAG CAG CAA CAA
193456 AAC * 9 25/27 AAC AAC AAC AAT AAC AAC AAC AAT AAC
219606 GTT * 7 19/21 GTT GTC GTT GTC GTT GTT GTT
220378 GCA * 8 22/24 GCA ACA GCA GCA GCA GCA GCA ACA
-----------------------------------------------------------------------------------------
Total sequence length......................... 266340
Total number of repeats detected.............. 13
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 0 0 1 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TCA 2 2 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 0 1 0 0 0 0 0 0 0 0 0 0
CTG 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 0 CAA + 1 GTT + 0 TTG + 1 TGT = 3
1 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 2 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 1 TCC = 1
0 AGC + 1 GCA + 1 CAG + 0 GCT + 1 CTG + 2 TGC = 5
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298582|gb|AE003663.1|AE003663 Drosophila melanogaster genomic scaffold 142000013386055 section 56 of 63, complete sequence
Position Repeat Coverage Repeat
363 TAT * 7 19/21 TAT AGT TAT TAT TAT TAT TAT
6328 ATC * 7 19/21 ATC AGA ATC ATC ATC ATC ATC
22514 AAC * 7 19/21 AAC AAC AAC TAC AAC TAC AAC
23893 CCG * 7 19/21 CCG CCT CCG CCG CCG CCG CAG
24920 GCA * 7 19/21 GCA GCA GCA GCA GCA GCA CCC
55099 GCA * 7 19/21 GCA GCA ACA ACA GCA GCA GCA
67798 CCT * 9 25/27 CCT CCT CCT CCT CCT CCT CCT CCG CCG
73140 CAA * 8 23/24 CAA CAA CAA GAA CAA CAA CAA CAA
129056 GAT * 7 19/21 GAT AAT GAT GAT TAT GAT GAT
130084 ACA * 7 19/21 ACA ACA GCA ACA ACA ACA ACG
132792 GAT * 7 19/21 GAT GAC GAT GAC GAT GAT GAT
150923 CAG * 10 27/30 CAG CAG CAG CAG CAG CAG CAG CAG GAG GAT
171500 CAG * 8 22/24 CAG CAG CAG CGG CAA CAG CAG CAG
193651 TGT * 10 28/30 TGT TGT TGT TGT TGT TGT TGT TAT TGC TGT
198589 GGA * 7 19/21 GGA GGA GGA GGA GGA GCT GGA
256207 TGG * 7 19/21 TGG TGA TGG TGT TGG TGG TGG
292802 ATA * 7 19/21 ATA ATA AAA ATA TTA ATA ATA
-----------------------------------------------------------------------------------------
Total sequence length......................... 299476
Total number of repeats detected.............. 17
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 0 1 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 2 2 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 1 1 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 1 ACA + 1 CAA + 0 GTT + 0 TTG + 1 TGT = 4
0 ATG + 0 TGA + 2 GAT + 0 CAT + 1 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 0 GAG + 1 CCT + 0 CTC + 0 TCC = 2
0 AGC + 2 GCA + 2 CAG + 0 GCT + 0 CTG + 0 TGC = 4
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 1 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 1 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298553|gb|AE003662.1|AE003662 Drosophila melanogaster genomic scaffold 142000013386055 section 55 of 63, complete sequence
Position Repeat Coverage Repeat
20679 TCC * 10 28/30 TCC TCC TCC TCC TGC TCC TCC TCC TCC TAC
21332 AGG * 7 19/21 AGG AGG AGG AGG AGG AGG GGT
28807 CAG * 11 31/33 CAG CAG CAG CAG CAG CAG CAG CAG CGG CAG CGG
89763 CTG * 7 20/21 CTG CTG CTG CTG CTG CTG TTG
102052 GAA * 7 20/21 GAA GAA GAA GAA GAA GAA GAG
104692 ATG * 7 19/21 ATG ATG ATG ATG ATG CTG CTG
152693 TGA * 7 19/21 TGA TGA TGA TGG AGA TGA TGA
153087 AGC * 7 19/21 AGC TGC AAC AGC AGC AGC AGC
158830 AAC * 8 22/24 AAC AAC AAC AAC AAC AAC AAC CAA
183279 CTG * 7 20/21 CTG CTG CTG CTG CTG CGG CTG
225083 TGC * 10 28/30 TGC TGC TGC TGC TGC TGC TGC TGC GCC TGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 263214
Total number of repeats detected.............. 11
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 0 1 0 0 0 0 0 0 0 0 0 0
TCC 1 0 1 0 0 0 0 0 0 0 0 0 0
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 0 1 0 0 0 0 0 0 0 0 0 0
CTG 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 1 GAA + 0 CTT + 0 TTC + 0 TCT = 1
1 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 1
1 ATG + 1 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 1 TCC = 2
1 AGC + 0 GCA + 1 CAG + 0 GCT + 2 CTG + 1 TGC = 5
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298501|gb|AE003661.1|AE003661 Drosophila melanogaster genomic scaffold 142000013386055 section 54 of 63, complete sequence
Position Repeat Coverage Repeat
8443 TGA * 7 19/21 TGA TGA TGA TGC TGA TGA TGT
15842 CAT * 7 20/21 CAT CGT CAT CAT CAT CAT CAT
49310 TTA * 7 19/21 TTA TTA TTA TTA TTA TTA TAG
71114 TGT * 8 22/24 TGT TGT TGT TGT TGT TGT TGT AGC
100433 GCT * 7 19/21 GCT GCT GCT GCT GCC GCT GCC
104300 GAC * 8 22/24 GAC GAC GAC GAC AAC GAC GAC GAT
117827 TGT * 8 22/24 TGT TGT TGT TGC TAT TGT TGT TGT
117957 CAG * 8 22/24 CAG CAA AAG CAG CAG CAG CAG CAG
132900 CAT * 7 19/21 CAT GAT CAC CAT CAT CAT CAT
170341 CTG * 7 19/21 CTG TTG CTG CTG CTG CTG CGG
170409 GCT * 7 20/21 GCT GAT GCT GCT GCT GCT GCT
196168 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC TGA TGG
202631 CTG * 9 26/27 CTG CTG CTG CTG CTG CTG CTG CTT CTG
228007 GTT * 7 19/21 GTT GAT GTT GTT GAT GTT GTT
232596 AAC * 7 20/21 AAC AAC AAC ATC AAC AAC AAC
244219 GTT * 7 19/21 GTT GTT GTT GTT GTT GCT GCT
257668 AGC * 7 19/21 AGC AAC AGC AGC AGC AAC AGC
258129 ACA * 7 19/21 ACA ACA ACA ACA ACA GCA GCA
-----------------------------------------------------------------------------------------
Total sequence length......................... 265023
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 1 ACA + 0 CAA + 2 GTT + 0 TTG + 2 TGT = 6
0 ATG + 1 TGA + 0 GAT + 2 CAT + 0 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 0 GCA + 1 CAG + 2 GCT + 2 CTG + 1 TGC = 7
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298465|gb|AE003660.1|AE003660 Drosophila melanogaster genomic scaffold 142000013386055 section 53 of 63, complete sequence
Position Repeat Coverage Repeat
10010 TCG * 7 19/21 TCG TCG TCG TCG TCA TTG TCG
18492 TTA * 7 19/21 TTA TTA TTA TTA TTA TTT TTG
37254 TGC * 12 34/36 TGC TGC TGC TGT TGC TGC TGC TGC TGC TGT TGC TGC
38061 CCT * 10 27/30 CCT CCT CCT CCT CCT CCT CCT CCG CCA CCG
43451 GCA * 21 57/63 GCA GCA GCG GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCG ACA GTT GCA ACA
48622 GTT * 10 27/30 GTT GTT GTT TTT GTT TTT GTT GTT GTT GCT
50840 TCA * 8 22/24 TCA CCA TCA TCA TCA TCA TCA CCA
55910 GCA * 7 19/21 GCA ATA GCA GCA GCA GCA GCA
63002 GCT * 12 33/36 GCT GCT GCT GCT GCT GCT GCT GCT GTT GCT GAT GTT
63836 GAT * 7 19/21 GAT GAT GAT GAT GAT GAT GCA
66011 AAC * 8 22/24 AAC AGC AAC AAC AAC AAC AAC AGC
69408 TGC * 7 20/21 TGC TGC TGC GGC TGC TGC TGC
69815 TGT * 10 27/30 TGT TGC TGT TGT TGT TGT TGT TGC TGT TGC
85018 ATA * 8 22/24 ATA ATA ATA ATA ATA ATA ATA TAA
98379 GCT * 7 19/21 GCT GCT GCT GCG GCT GCT GCC
118665 GCT * 7 19/21 GCT GCT GCT GCT GCT GCG GTT
121106 CGT * 7 19/21 CGT TGT CGT CGT CGT CGT CGG
161072 GTT * 7 19/21 GTT GTT GTT GCA GTT GTT GTT
180954 CAA * 10 27/30 CAA CAA CAA CAA CAA CAA CAA CAA CTA AGA
193524 TGC * 14 38/42 TGC TGC GGC TGC TGC TGC TGC TGC TGC TGC TGC TGC GGC GGA
193795 TGC * 7 19/21 TGC TGT TGC TGC TGC TGC TGT
207953 GTT * 7 19/21 GTT GTT GTT ATT GTT TTT GTT
207983 GCA * 10 27/30 GCA GCA GCA GCA GCA GCA GCA GCC ACA GGA
-----------------------------------------------------------------------------------------
Total sequence length......................... 231972
Total number of repeats detected.............. 23
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 4 2 1 1 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 3 2 1 0 0 0 0 0 0 0 0 0 0
GCA 3 1 1 0 0 1 0 0 0 0 0 0 0
GCT 3 2 1 0 0 0 0 0 0 0 0 0 0
CAA 1 0 1 0 0 0 0 0 0 0 0 0 0
CGT 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 1 CAA + 3 GTT + 0 TTG + 1 TGT = 6
0 ATG + 0 TGA + 1 GAT + 0 CAT + 0 ATC + 1 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 1 CCT + 0 CTC + 0 TCC = 1
0 AGC + 3 GCA + 0 CAG + 3 GCT + 0 CTG + 4 TGC = 10
0 ACG + 0 CGA + 0 GAC + 1 CGT + 0 GTC + 1 TCG = 2
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298444|gb|AE003659.1|AE003659 Drosophila melanogaster genomic scaffold 142000013386055 section 52 of 63, complete sequence
Position Repeat Coverage Repeat
4994 AAC * 8 22/24 AAC AAC AAC AGC AAC AAC AAC AAT
16596 TCA * 7 19/21 TCA TCA GCA TCA TCA TCG TCA
28464 CTT * 8 22/24 CTT CTT CTT CTT CTT TTT GTT CTT
48709 GCT * 10 28/30 GCT GCT GCT GCT GCT GCT GTT GCT GCT GCG
48777 TGC * 7 19/21 TGC TGC TGC TGC TGC TGC CGG
52693 CTG * 7 19/21 CTG CTG CTT CTG CTG CTG CGG
58808 TGC * 7 19/21 TGC TGC TGC TGC TGC TGT GGC
58994 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC AGC TGA
116266 GAT * 12 33/36 GAT GAT GAT GAT GCT GGT GAT GAT GAT GAT GCT GAT
116511 TGA * 7 19/21 TGA TGG TGA TGA TGA TGA TGG
129477 TGC * 7 19/21 TGC TGT TGC TGT TGC TGC TGC
152941 ATC * 7 19/21 ATC ATT ATT ATC ATC ATC ATC
176732 CAG * 7 19/21 CAG CAG CAT CAA CAG CAG CAG
189520 TTA * 7 19/21 TTA TTA TTA ATA TTA TTT TTA
202436 GCT * 7 19/21 GCT GCT GCT GCT GCT CCT CCT
237714 GCA * 7 19/21 GCA TCA GCC GCA GCA GCA GCA
246925 TGA * 7 19/21 TGA TGA TGA TGA TGA TGC TGC
247808 CTC * 7 19/21 CTC GGC CTC CTC CTC CTC CTC
251114 TGA * 8 22/24 TGA TGA TGA TGA TGA TGA TGA GGT
-----------------------------------------------------------------------------------------
Total sequence length......................... 260897
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 3 3 0 0 0 0 0 0 0 0 0 0 0
TGC 4 4 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 2 1 1 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 1
1 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 3 TGA + 1 GAT + 0 CAT + 1 ATC + 1 TCA = 6
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 1
0 AGC + 1 GCA + 1 CAG + 2 GCT + 1 CTG + 4 TGC = 9
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298430|gb|AE003658.1|AE003658 Drosophila melanogaster genomic scaffold 142000013386055 section 51 of 63, complete sequence
Position Repeat Coverage Repeat
4268 AAC * 11 30/33 AAC AAC AAG AAC AAC AAC AAC AAC AAC AAC GGC
18973 TTG * 7 19/21 TTG TTG TTG ATG TTG TTG TTT
30971 ATA * 7 19/21 ATA ACA AGA ATA ATA ATA ATA
36872 CTG * 8 22/24 CTG CTC CTG CTC CTG CTG CTG CTG
57563 TGC * 12 33/36 TGC TGC TGC TGC TGC TGC TGC TGC TGC AGG TGT TGC
58411 ATC * 9 25/27 ATC ATC ATC ATC ATC GTC ATA ATC ATC
84055 ATG * 7 19/21 ATG ATG ATG AAG ATG ATG ACG
87560 CAG * 8 22/24 CAG CAG TAG CAG CAA CAG CAG CAG
138339 CAG * 7 19/21 CAG CAG CAG CAA CTG CAG CAG
153082 GAT * 8 22/24 GAT GAT GAT GAT GAT GAC GAT GCT
184332 CAG * 7 19/21 CAG CAG CAG CAG CAC CAG CAA
197150 CTG * 7 19/21 CTG CTG CTG CTG CTG CTG AAG
241648 ACG * 7 19/21 ACG ACG ACG ACA CCG ACG ACG
243931 CAG * 7 19/21 CAG CAG CAG CAG CAG AAG AAG
-----------------------------------------------------------------------------------------
Total sequence length......................... 270233
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 0 1 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACG 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 0 1 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 4 4 0 0 0 0 0 0 0 0 0 0 0
CTG 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 0 CAA + 0 GTT + 1 TTG + 0 TGT = 2
1 ATG + 0 TGA + 1 GAT + 0 CAT + 1 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 4 CAG + 0 GCT + 2 CTG + 1 TGC = 7
1 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298413|gb|AE003657.1|AE003657 Drosophila melanogaster genomic scaffold 142000013386055 section 50 of 63, complete sequence
Position Repeat Coverage Repeat
82707 CAG * 7 19/21 CAG CTG CAG CAA CAG CAG CAG
82758 CAG * 8 22/24 CAG CAA CAG CAG CAG CAT CAG CAG
83268 CAG * 14 38/42 CAG CAC CAG CAG CAG CAA CAG CAG CAG CAG CAG CAG CAA CAT
83387 GCC * 7 19/21 GCC GCC TCC GCC GCC GCC CCC
117325 AAT * 7 19/21 AAT AAT AAA AAC AAT AAT AAT
229248 TAC * 12 33/36 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAT CAC TGC
241871 TTG * 7 20/21 TTG CTG TTG TTG TTG TTG TTG
246426 TGC * 8 22/24 TGC TGC TGC TGT TGC TGC TGC AGC
250581 TGC * 10 27/30 TGC TGC TGC TGC TGC TGC TGC TGG TGG TGG
-----------------------------------------------------------------------------------------
Total sequence length......................... 256054
Total number of repeats detected.............. 9
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TAC 1 0 1 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 1 1 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 3 2 0 1 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 1 TTG + 0 TGT = 1
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 1 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 3 CAG + 0 GCT + 0 CTG + 2 TGC = 5
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298410|gb|AE003656.1|AE003656 Drosophila melanogaster genomic scaffold 142000013386055 section 49 of 63, complete sequence
Position Repeat Coverage Repeat
1386 GCT * 7 19/21 GCT GCG GCT GCT TCT GCT GCT
-----------------------------------------------------------------------------------------
Total sequence length......................... 251154
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 1 GCT + 0 CTG + 0 TGC = 1
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298378|gb|AE003655.1|AE003655 Drosophila melanogaster genomic scaffold 142000013386055 section 48 of 63, complete sequence
Position Repeat Coverage Repeat
18243 AGC * 13 36/39 AGC AGC AGC AAC AGC AGC AGC AGC AGC AGC AGC AGC ATG
18297 GCA * 7 19/21 GCA GCA GCA GCA ACA GCC GCA
52790 TAT * 8 22/24 TAT TAT TAT TGT TAT TAT TGT TAT
52854 CTG * 13 36/39 CTG CTG CTG CTG CTG CTG CTG AAG CTG CTG CTG CTG ATG
53246 CTG * 14 38/42 CTG TTG CTG TTG CTG CTG CTG CTG CTG CTG CTG CTG TTG GTG
53304 TGC * 8 22/24 TGC TGG TGC TGT TGC TGC TGC TGC
53403 TGC * 7 19/21 TGC TGC TGT TGC TGT TGC TGC
83993 TCA * 8 22/24 TCA TCA TCA TCA TCA TCA TCG TCC
91212 CCG * 8 22/24 CCG CTG CCG CCA CCG CCG CCG CCG
103398 CTG * 7 19/21 CTG CTG CTA CTG GTG CTG CTG
172055 TGA * 12 33/36 TGA TGG TGA TGA TGA TGA TGG TGA TGA TGA TGG TGA
172116 GTG * 7 19/21 GTG TTG GTG GTG GTG GTA GTG
175156 TGC * 8 22/24 TGC TCT TGC TGC TGC TGC TGC TGC
193575 CTG * 14 38/42 CTG CTG CTA TTG CTG CTG CTG CTG CTG TTG CTG CTG CTG TTG
226452 TGC * 9 25/27 TGC AGT TGC TGC TGC TGC TGC TGC TGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 254383
Total number of repeats detected.............. 15
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGC 1 0 0 1 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 4 4 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 4 1 0 3 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 1 TGA + 0 GAT + 0 CAT + 0 ATC + 1 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 1 GCA + 0 CAG + 0 GCT + 4 CTG + 4 TGC = 10
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 1 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 1 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298369|gb|AE003654.1|AE003654 Drosophila melanogaster genomic scaffold 142000013386055 section 47 of 63, complete sequence
Position Repeat Coverage Repeat
119916 ATA * 7 20/21 ATA ATA TTA ATA ATA ATA ATA
196700 GTT * 7 20/21 GTT GTT GTT GTT GTT GTT GCT
198407 TAT * 7 19/21 TAT CAT TAT CAT TAT TAT TAT
198635 ATG * 7 19/21 ATG CTG ATG CTG ATG ATG ATG
203455 ACA * 10 27/30 ACA GCA ACA ACA ACA ACA ACA ACA GCA AAA
207994 ACA * 7 19/21 ACA ACA ACA ACA ACA GCA GCA
208136 TGC * 7 20/21 TGC TGC TGC TGT TGC TGC TGC
247960 GCT * 7 19/21 GCT GCT GCT GTT GCT GCT GCA
257407 TGC * 8 22/24 TGC TGC CGC TGC TGC TGC TGT TGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 261000
Total number of repeats detected.............. 9
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 2 1 1 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 2 ACA + 0 CAA + 1 GTT + 0 TTG + 0 TGT = 3
1 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 1 GCT + 0 CTG + 2 TGC = 3
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298355|gb|AE003653.1|AE003653 Drosophila melanogaster genomic scaffold 142000013386055 section 46 of 63, complete sequence
Position Repeat Coverage Repeat
14245 AAT * 7 19/21 AAT AAT AAT GAT AAT TAT AAT
14934 CAA * 7 19/21 CAA CAA CAG CAA CAT CAA CAA
39988 GCA * 8 22/24 GCA GCA ACA GCA GCA GCA GCA ACA
55402 CAG * 9 25/27 CAG AAG CTG CAG CAG CAG CAG CAG CAG
82776 CTG * 7 19/21 CTG CTG TTG CTG CTG CTG GTG
106150 TAA * 7 19/21 TAA GAA TAA TAA TAA TAA TCA
119038 GCA * 8 22/24 GCA GCT GCA GCA GCA GCA GCA GCC
147066 GCA * 9 25/27 GCA GGA GCA GTA GCA GCA GCA GCA GCA
148626 CAA * 7 19/21 CAA CAA CAA CAA CAA CAA AAC
148709 TGT * 7 19/21 TGT TGT AGT TGT AGT TGT TGT
218922 GCT * 10 29/30 GCT GCT GTT GCT GCT GCT GCT GCT GCT GCT
228596 ATA * 7 19/21 ATA ATA AAA ATA ATA ATA ATG
-----------------------------------------------------------------------------------------
Total sequence length......................... 249742
Total number of repeats detected.............. 12
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 3 3 0 0 0 0 0 0 0 0 0 0 0
GCT 1 0 1 0 0 0 0 0 0 0 0 0 0
CAA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 1 ATA + 1 TAA + 0 ATT + 0 TTA + 0 TAT = 3
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 2 CAA + 0 GTT + 0 TTG + 1 TGT = 3
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 3 GCA + 1 CAG + 1 GCT + 1 CTG + 0 TGC = 6
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298316|gb|AE003652.1|AE003652 Drosophila melanogaster genomic scaffold 142000013386055 section 45 of 63, complete sequence
Position Repeat Coverage Repeat
3693 CTT * 8 22/24 CTT CTT CTT CTT CTT CAT CAT CTT
6280 GCA * 20 54/60 GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA ACA GCA GCA GCC GCA GCA ACC ACC
6367 GCA * 11 30/33 GCA GCA ACA GCA GCA ACA GCA GCA GCA GCA ACA
41735 GCA * 7 19/21 GCA ACA GCA GCA GCA GCA GCC
41801 ACA * 7 19/21 ACA GCA ACA ACA ACA ACA GCA
45527 CAT * 7 19/21 CAT CAC CAT CAT CAT CAT CAC
150947 AGC * 8 22/24 AGC AGC AGC ATC AGC GGC AGC AGC
153127 TAC * 7 19/21 TAC TAC TAC TAC TAC TAC AAG
188391 TTG * 7 19/21 TTG TTG TTG CTG TTG TTG TCG
192910 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC TGC TAA
193100 TGC * 11 32/33 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGG
194543 CAA * 7 19/21 CAA CAA CAA CAA CAA CAA CCG
197880 CAG * 7 19/21 CAG CAG CAC CAC CAG CAG CAG
199758 GAG * 8 23/24 GAG GAT GAG GAG GAG GAG GAG GAG
243759 TAC * 7 19/21 TAC TAC AAT TAC TAC TAC TAC
253879 AGG * 14 38/42 AGG AGG CGC AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG AAA
256786 CTG * 8 23/24 CTG CTG CTG CTG CTG CTG CTG CTT
-----------------------------------------------------------------------------------------
Total sequence length......................... 258166
Total number of repeats detected.............. 17
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGG 1 0 0 1 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAC 2 2 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 1 1 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 3 1 1 0 0 1 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 1
0 AAC + 1 ACA + 1 CAA + 0 GTT + 1 TTG + 0 TGT = 3
0 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 2 TAC = 2
1 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 2
1 AGC + 3 GCA + 1 CAG + 0 GCT + 1 CTG + 2 TGC = 8
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298303|gb|AE003651.1|AE003651 Drosophila melanogaster genomic scaffold 142000013386055 section 44 of 63, complete sequence
Position Repeat Coverage Repeat
52382 CAA * 8 22/24 CAA CAA CAA CAA CAA CAA CAA CCG
77152 CAG * 7 19/21 CAG CAG CAG AAG CAG CGG CAG
102535 CAA * 14 39/42 CAA CAA CAA CAA CAA CAT CAG CAA CAA CAA CAA CAA CAA CCA
106841 GCT * 8 22/24 GCT GCT GCT GCA GCT GCT GCT GCG
107756 TTG * 7 19/21 TTG TTG TTA TTA TTG TTG TTG
123044 TGC * 12 33/36 TGC TGC TGC TGC TGT TGC TGC TGC TGT TGT TGC TGC
123260 TGC * 7 19/21 TGC TGC TGC TGT TGC TGC TGG
123281 GCT * 7 19/21 GCT GCT GCG GCT GCC GCT GCT
123310 CTG * 7 19/21 CTG CTG CTG CTG CTG GTG ATG
140469 AGC * 7 19/21 AGC AGC AGC AGT AGC AGC AAC
142519 TGC * 7 19/21 TGC TGC TGC TGC TGC TGT TGA
149390 ACC * 12 33/36 ACC AAC AAC ACC ACC ACC ACC ACC ACC ACC ACC GCC
149494 GCT * 7 19/21 GCT GCT GCT GTT GCT GAT GCT
149537 CTG * 7 19/21 CTG CTG ATG CTG CTG CTG CAG
151573 CAG * 7 19/21 CAG CCG TAG CAG CAG CAG CAG
151818 TAT * 7 19/21 TAT TAT TAT TAT TAT TAT ATT
151935 TTA * 10 27/30 TTA TTA TTA TTA TTG ATA TTA TTA TTA ATA
158782 ATT * 8 23/24 ATT ATT ATT ATT ATT ATT ATT GTT
164724 AAC * 7 19/21 AAC AAC AAC AAC AAT AAC AGC
172174 ACA * 7 19/21 ACA GCA ACA ACA ACA ACA AAA
181042 CTT * 7 19/21 CTT CTT CTT CTT CTT TTC CTT
197967 AGC * 14 40/42 AGC AGC AGC AGC AGC AGC AGC AGC AGC CGC AGC AAC AGC AGC
198099 CAG * 8 22/24 CAG CAG CAG CTG CAA CAG CAG CAG
198124 AGC * 7 19/21 AGC AGC AGC AGC AGG AGC AAC
198398 CAG * 14 38/42 CAG CAG CAA CAG CAA CAG CAG CAG CAG CAG CAG CAG CAG CTT
198524 GCA * 7 19/21 GCA GCA GCA GCA GCA GCT TCA
198584 CAG * 7 19/21 CAG CAG CAA CAG CAA CAG CAG
198620 CAG * 7 19/21 CAG CAT CAG CAG CAA CAG CAG
203172 TAA * 7 19/21 TAA TAA TAA TAA TAA CAA CAA
208694 AGC * 7 19/21 AGC AGC AGC AGC AAC AGT AGC
212023 CAG * 14 38/42 CAG CAG CAA CAG CAG CAG CAA CAG CAG CAG CAG CAG CAA CAT
225068 CTT * 7 19/21 CTT CTT CTT CTT CTT TTT TTT
232659 ATG * 7 19/21 ATG ATG ATG ATG ATG GTT ATG
-----------------------------------------------------------------------------------------
Total sequence length......................... 254674
Total number of repeats detected.............. 33
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 4 3 0 1 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
ACC 1 0 1 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 0 1 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 3 2 1 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 3 3 0 0 0 0 0 0 0 0 0 0 0
CAA 2 1 0 1 0 0 0 0 0 0 0 0 0
CAG 7 5 0 2 0 0 0 0 0 0 0 0 0
CTT 2 2 0 0 0 0 0 0 0 0 0 0 0
CTG 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 1 ATT + 1 TTA + 1 TAT = 4
0 AAG + 0 AGA + 0 GAA + 2 CTT + 0 TTC + 0 TCT = 2
1 AAC + 1 ACA + 2 CAA + 0 GTT + 1 TTG + 0 TGT = 5
1 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
4 AGC + 1 GCA + 7 CAG + 3 GCT + 2 CTG + 3 TGC = 20
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
1 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298270|gb|AE003650.1|AE003650 Drosophila melanogaster genomic scaffold 142000013386055 section 43 of 63, complete sequence
Position Repeat Coverage Repeat
76559 GAC * 7 19/21 GAC GAC GAC GAG GAC GTC GAC
94598 CAG * 11 30/33 CAG CAG GAG AAG CAG CAG CAG CAG CAG TAG CAG
103484 ATA * 7 19/21 ATA ATA ATC CTA ATA ATA ATA
121671 TGG * 7 19/21 TGG TGG TGG TGG TGA TGG TGT
128930 GAT * 12 33/36 GAT GAC GAT GTT GAT GAT GAT GAT GAT GAT GAC GAT
166056 TTA * 7 19/21 TTA GTA TTA TTC TTA TTA TTA
168799 GCT * 7 19/21 GCT GCT GCT GCT GAT GAT GCT
171678 AAC * 7 20/21 AAC AAC AAC AAT AAC AAC AAC
171804 GTT * 7 19/21 GTT GCT GTT GTT GTT GTT ATT
180772 GTT * 7 19/21 GTT GTT GTT GTT GTT GTT TAT
192378 AGG * 11 30/33 AGG AGG AGG AGG AGG AGG AGG AGG TGG TGG TGG
196857 CTC * 7 19/21 CTC CTC CTC CTC CTC CGG CTC
204831 GAT * 7 19/21 GAT GAT GAT GAT GAT GAG GCT
221854 GAC * 8 23/24 GAC GAC GAC GGC GAC GAC GAC GAC
221967 CTA * 7 19/21 CTA CTA CCA CTA TTA CTA CTA
223131 CTA * 8 22/24 CTA CTA CTA CTA CTA CTA CTT CTT
-----------------------------------------------------------------------------------------
Total sequence length......................... 264581
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 1 0 1 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 2 1 1 0 0 0 0 0 0 0 0 0 0
GAC 2 2 0 0 0 0 0 0 0 0 0 0 0
GTT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 0 1 0 0 0 0 0 0 0 0 0 0
CTA 2 2 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 0 CAA + 2 GTT + 0 TTG + 0 TGT = 3
0 ATG + 0 TGA + 2 GAT + 0 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 2 CTA + 0 TAC = 2
1 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 2
0 AGC + 0 GCA + 1 CAG + 1 GCT + 0 CTG + 0 TGC = 2
0 ACG + 0 CGA + 2 GAC + 0 CGT + 0 GTC + 0 TCG = 2
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 1 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298255|gb|AE003649.1|AE003649 Drosophila melanogaster genomic scaffold 142000013386055 section 42 of 63, complete sequence
Position Repeat Coverage Repeat
13204 AGC * 7 19/21 AGC AGC AGC AGC AGC AAC AAC
39547 AGC * 8 23/24 AGC AGC AGC AGC AGC AGC AGC AGG
137233 TTG * 9 25/27 TTG CTG TTG TTG TTG TTG TTA TTG TTG
152325 CAA * 7 20/21 CAA CAA CAA CAA CAA CAA CGA
226365 GCA * 7 19/21 GCA ACA GCG GCA GCA GCA GCA
238784 GGA * 12 33/36 GGA GGA GGA GGA GGA GGA GGA GGA GGA AGA GGA AAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 275242
Total number of repeats detected.............. 6
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 1 CAA + 0 GTT + 1 TTG + 0 TGT = 2
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 1
2 AGC + 1 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 3
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298233|gb|AE003648.1|AE003648 Drosophila melanogaster genomic scaffold 142000013386055 section 41 of 63, complete sequence
Position Repeat Coverage Repeat
27276 GCA * 7 19/21 GCA GCA GCA GCA GCA ACA ACA
109874 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAC GAG
137294 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAG CCA
167869 TGA * 10 29/30 TGA TGA TGA TGA TGA TGA TGA TGA TGT TGA
191117 ATA * 7 19/21 ATA AGA ATA ATA ATA AAA ATA
191160 AAT * 10 27/30 AAT AAT AAT AAT AAT TCT AAT AAT AAT AAA
191196 AAT * 7 19/21 AAT AAT AAT AAT AAT AAT ATA
192162 TAA * 18 49/54 TAA TAA TAA TAA TAA TAA TAA TTA TAA TAT TAA TAT TAA TAA TAA TAA TAA TGG
207518 TCA * 7 20/21 TCA TCA TCA TCA TCA TCA TCG
224513 GAT * 8 22/24 GAT GAT GGT GAT GAT GAT GAT GAC
-----------------------------------------------------------------------------------------
Total sequence length......................... 240520
Total number of repeats detected.............. 10
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 2 1 1 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 0 0 0 1 0 0 0 0 0 0 0 0
TGA 1 0 1 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
2 AAT + 1 ATA + 1 TAA + 0 ATT + 0 TTA + 0 TAT = 4
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 1 TGA + 1 GAT + 0 CAT + 0 ATC + 1 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 1 GCA + 2 CAG + 0 GCT + 0 CTG + 0 TGC = 3
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298216|gb|AE003647.1|AE003647 Drosophila melanogaster genomic scaffold 142000013386055 section 40 of 63, complete sequence
Position Repeat Coverage Repeat
49528 GCA * 9 25/27 GCA GCA GCA GCA GCA GCA GCA ACT GCA
56884 GAT * 7 19/21 GAT GAT GAT GAT GAT GAA GAC
83275 TCA * 7 19/21 TCA TCA TCA TCA TCA TCA TTG
85963 GTA * 10 28/30 GTA GTA GTA GTA GTA GTA GTA GTT GTA GTG
114713 CAT * 7 20/21 CAT TAT CAT CAT CAT CAT CAT
117435 TCA * 7 20/21 TCA TCA TCA TCA TCA TCA TCG
130127 CGT * 10 27/30 CGT CGT CGC CGT CGT CGC CGT CGT CGT CTT
142890 ATG * 7 19/21 ATG ATG ATG ATG ATG ACG CTG
144828 GAT * 8 22/24 GAT GAT GAT GAT GAT GAT GGA GAT
153501 TAA * 7 19/21 TAA TCA TAA TAA TAA TAA CAA
164299 GAG * 10 27/30 GAG GAG GAG GAG GAG GAG GAG GAG AAC GAT
191226 TTA * 7 20/21 TTA TTA TTA TTA TTA TTA TTT
208960 CCT * 10 27/30 CCT GGT CCT CCT CCT CCT CCT CCT CCT CCA
228151 CTG * 7 19/21 CTG CCG CTG CTG CTG TTG CTG
228853 CAG * 7 19/21 CAG CAG CAG CGG CAG CAG CGG
-----------------------------------------------------------------------------------------
Total sequence length......................... 262205
Total number of repeats detected.............. 15
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 2 2 0 0 0 0 0 0 0 0 0 0 0
GAT 2 2 0 0 0 0 0 0 0 0 0 0 0
GAG 1 0 1 0 0 0 0 0 0 0 0 0 0
GTA 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CGT 1 0 1 0 0 0 0 0 0 0 0 0 0
CCT 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 0 ATT + 1 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
1 ATG + 0 TGA + 2 GAT + 1 CAT + 0 ATC + 2 TCA = 6
0 AGT + 1 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 1 GAG + 1 CCT + 0 CTC + 0 TCC = 2
0 AGC + 1 GCA + 1 CAG + 0 GCT + 1 CTG + 0 TGC = 3
0 ACG + 0 CGA + 0 GAC + 1 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298191|gb|AE003646.1|AE003646 Drosophila melanogaster genomic scaffold 142000013386055 section 39 of 63, complete sequence
Position Repeat Coverage Repeat
9364 GAC * 8 22/24 GAC GAT GAC GAT GAC GAC GAC GAC
18007 CAA * 9 25/27 CAA CAA TAA CAA CAA CAA CAA CAA CCA
18269 AAC * 8 22/24 AAC AAC AAC AAC AAC AAC CGC AAC
40717 ACA * 7 19/21 ACA GCA GCA ACA ACA ACA ACA
41068 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CAA
73400 ATA * 7 19/21 ATA TAA ATA ATA ATA ATA ATA
99488 GAT * 14 39/42 GAT GAT GAT GAT GAT AAT GAT GAT GAT GAT GGT GAT CAT GAT
106430 CAA * 7 19/21 CAA CAA TAA CAA CAA CAA CGA
121233 ACG * 9 25/27 ACG ACG ACG ACG ACG ACG ACG ACC ATG
200897 GGA * 8 22/24 GGA GGA GGA GGA GGT GGA TGA GGA
211378 TGT * 7 19/21 TGT TGC TGT TGC TGT TGT TGT
220057 TTG * 7 19/21 TTG TTG TTG GTG TTG TTG GTG
239907 GCA * 12 33/36 GCA GCA GCA GCA GCA GCA GCA ACA GCA ACA GCA ACA
260017 CTG * 9 25/27 CTG CTG CAG CTG CTG CTG CTG CTG CTC
-----------------------------------------------------------------------------------------
Total sequence length......................... 266295
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
ACG 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 0 0 1 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 0 1 0 0 0 0 0 0 0 0 0 0
CAA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 1 ACA + 2 CAA + 0 GTT + 1 TTG + 1 TGT = 6
0 ATG + 0 TGA + 1 GAT + 0 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 1
0 AGC + 1 GCA + 1 CAG + 0 GCT + 1 CTG + 0 TGC = 3
1 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 2
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298171|gb|AE003645.1|AE003645 Drosophila melanogaster genomic scaffold 142000013386055 section 38 of 63, complete sequence
Position Repeat Coverage Repeat
127506 TTG * 8 22/24 TTG TTG GTG TTG TTG TTG CTG TTG
137196 GCT * 7 19/21 GCT GCT CCT GCT ACT GCT GCT
142631 AGC * 7 19/21 AGC AGC AGC ACA AGC AGC AGC
170607 TGG * 7 19/21 TGG TGG TGC GGG TGG TGG TGG
178249 AGC * 10 28/30 AGC AGC AGC AGC AGC AGC AGC AAC AGC ACC
183075 ATC * 11 31/33 ATC ATC CTC ATC CTC ATC ATC ATC ATC ATC ATC
217822 TGA * 7 19/21 TGA TGA TAA TGA TGA TGA CGA
226837 ATA * 7 19/21 ATA ATA ATA ATA ATA ACA AAA
233524 TGC * 7 19/21 TGC TGC TGC TGC TGT TGC TTC
250661 TAT * 8 23/24 TAT TAT TAT GAT TAT TAT TAT TAT
-----------------------------------------------------------------------------------------
Total sequence length......................... 261527
Total number of repeats detected.............. 10
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 0 1 0 0 0 0 0 0 0 0 0 0
AGC 2 1 1 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 1 TTG + 0 TGT = 1
0 ATG + 1 TGA + 0 GAT + 0 CAT + 1 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
2 AGC + 0 GCA + 0 CAG + 1 GCT + 0 CTG + 1 TGC = 4
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 1 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298162|gb|AE003644.1|AE003644 Drosophila melanogaster genomic scaffold 142000013386055 section 37 of 63, complete sequence
Position Repeat Coverage Repeat
6961 GAT * 7 19/21 GAT GAT GAT GAT GGT GAT GGT
17705 TTG * 8 22/24 TTG TTG TTG TAG TTG TTG TTG TGG
21508 GCA * 7 19/21 GCA GCA GCA GCA GCA GCG GCT
40219 AGC * 7 19/21 AGC AGC AAC GGC AGC AGC AGC
40240 AAC * 7 19/21 AAC ATC AAC AAC AGC AAC AAC
40409 CAG * 12 33/36 CAG CAG CAG CAG CAA CAG CAG CGG CAG CAG CAA CAG
40718 CAG * 11 30/33 CAG CGG CAG CAG CAA CAG CAG CAG CAG CAG CAA
50062 TGC * 7 19/21 TGC TGC TGT TGC TGT TGC TGC
101077 GCA * 10 27/30 GCA GCA GCA GCA GCA GCA GCG GCA ACA ACA
121981 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CAT
125448 CTG * 8 22/24 CTG CTG CTG CTG CTG CTG CTG CCA
129646 CAT * 8 22/24 CAT CAC CAA CAT CAT CAT CAT CAT
130020 GTT * 10 27/30 GTT GTT GGT GCT GTT GTT GTT GTT GTT ATT
153076 GCA * 8 22/24 GCA ACA GCA ACA GCA GCA GCA GCA
160588 GCA * 8 22/24 GCA GCA GCA GCA GCA GCA GCA TCG
184107 GCA * 7 20/21 GCA GCA GCA GCG GCA GCA GCA
189191 TGA * 8 22/24 TGA TGC TGA TGC TGA TGA TGA TGA
198243 TTG * 7 19/21 TTG TTG TTG TTG TTG TAG TTC
198327 GTT * 8 22/24 GTT GTT GTT GTT ATT GTT ATT GTT
243809 AGC * 7 20/21 AGC AGC AGC AGC AGC AGC AAC
244864 CAG * 7 19/21 CAG CAG CAG CAA CAG CAG GAG
244933 CAG * 7 19/21 CAG GAG CAA CAG CAG CAG CAG
244969 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG GAG
-----------------------------------------------------------------------------------------
Total sequence length......................... 264851
Total number of repeats detected.............. 23
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 2 1 1 0 0 0 0 0 0 0 0 0 0
GCA 5 4 1 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 6 4 2 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 0 CAA + 2 GTT + 2 TTG + 0 TGT = 5
0 ATG + 1 TGA + 1 GAT + 1 CAT + 0 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
2 AGC + 5 GCA + 6 CAG + 0 GCT + 1 CTG + 1 TGC = 15
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298143|gb|AE003643.1|AE003643 Drosophila melanogaster genomic scaffold 142000013386055 section 36 of 63, complete sequence
Position Repeat Coverage Repeat
33435 GGA * 7 19/21 GGA GGA GGA GCA GGA GGT GGA
77673 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CAC
78123 CAG * 7 19/21 CAG CAG CAG CAA CAG CAG CAA
78168 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAA CAA
78276 CAG * 7 19/21 CAG CAG CAG CAG CAA CAG CAA
78321 CAG * 8 22/24 CAG CAG CAG CAG CAA CAG CAG CAA
108539 AGC * 7 19/21 AGC AAC AGC AGC AGC AGC AGG
156261 CAT * 7 19/21 CAT CAT CAT TAC CAT CAT CAT
160924 GCC * 7 19/21 GCC GCC GCC GCC GCT GCT GCC
161706 GCC * 7 19/21 GCC GCC GCC GCT GCC GCT GCC
165913 TTG * 8 23/24 TTG TTG TTG TTG TTG TTG TTT TTG
179728 TTG * 7 19/21 TTG TTG CTG TTG TTG TTG TTT
196258 CAG * 7 19/21 CAG CAG CAG CAG CAG CAG GAA
201721 CAG * 9 25/27 CAG TGG CAG CAG CAG CAG CAG CAG CAG
213105 GTT * 7 19/21 GTT GAT GTT GTT TTT GTT GTT
227241 GTT * 8 22/24 GTT GCT GCT GTT GTT GTT GTT GTT
-----------------------------------------------------------------------------------------
Total sequence length......................... 240197
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
GTT 2 2 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCC 2 2 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 7 7 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 2 GTT + 2 TTG + 0 TGT = 4
0 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 1
1 AGC + 0 GCA + 7 CAG + 0 GCT + 0 CTG + 0 TGC = 8
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 2 GCC + 0 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298121|gb|AE003642.1|AE003642 Drosophila melanogaster genomic scaffold 142000013386055 section 35 of 63, complete sequence
Position Repeat Coverage Repeat
15909 ATT * 7 19/21 ATT ATT ATA ATT ATT ATT ATA
20965 TTA * 7 19/21 TTA ATA TTA TTA TTA TTA TAA
34598 ATT * 7 19/21 ATT AAT ATC ATT ATT ATT ATT
35084 TGC * 7 19/21 TGC TGC TGC TGC TGC TGC AGA
43071 CAG * 12 33/36 CAG CCG CAG CAG CAG CAG CAG CAG CAA CAG CAG CAA
59285 GCT * 10 27/30 GCT GCT GTT GCT GCT GCT CCT GCT GCT GGT
82595 CAT * 8 22/24 CAT CAT CAT CAT CAT CAT CAT CTG
93070 TGC * 8 23/24 TGC TGC TGC TGC TGC TGT TGC TGC
93603 TGC * 7 19/21 TGC TGC TGC TGC TGA TGC TTC
103478 GCA * 7 19/21 GCA GCA GCA ACA TCA GCA GCA
104292 AGC * 12 33/36 AGC AGC AGC AGT AGC AGC AGC AAC AGC AGC AAC AGC
137727 TTG * 12 33/36 TTG GTG TTG CTG TTG TTG TTG TTG TTG TTG CTG TTG
141803 GCT * 8 22/24 GCT GCT GCA GCT GCT GCT GCT GTT
158105 CGA * 7 19/21 CGA CGA CGA CAA CGA CAA CGA
171011 TGC * 9 25/27 TGC TGC TAC TGC TGC TGC TGC TGC TGT
181601 TGC * 7 19/21 TGC TGC TGA TGC TGC TGC TAC
181624 CTG * 7 19/21 CTG CTG CTG CTG TTG CTG CTC
200619 GCA * 7 19/21 GCA GCA GCT GCA GCA GCA ACA
200647 CAA * 7 19/21 CAA CAA CAG CAA CAG CAA CAA
206637 GTG * 11 30/33 GTG GTT GTG GTG GTG GTG GTG GTG GTG GTC GAG
208358 CTG * 7 19/21 CTG CTG CTG TTG CTG TTG CTG
208715 GCT * 10 27/30 GCT GCT GAT GCT GCT GCT GCT GCT GCT GTG
208762 TGC * 8 22/24 TGC TGC TGC TGC GGC TGC TGC TGG
217170 GCA * 13 37/39 GCA GCA GCA GCA GCA GCA GCA GCA GCA GTG GCA GCA GCA
224557 ATC * 7 19/21 ATC ATG ATC ATG ATC ATC ATC
238435 TGT * 7 19/21 TGT TGT TGT TGT TGT TGC TAT
239318 ATA * 8 23/24 ATA ATA ATA ATA ATA ATA ATA AAA
249131 TTG * 8 23/24 TTG TTG TTG TTG TTA TTG TTG TTG
257800 TAT * 10 28/30 TAT TAT TAT TAT TAT TAT TAT TAT TAT TCG
-----------------------------------------------------------------------------------------
Total sequence length......................... 272070
Total number of repeats detected.............. 29
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 2 2 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 0 1 0 0 0 0 0 0 0 0 0 0
TAT 1 0 1 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 2 1 1 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 6 6 0 0 0 0 0 0 0 0 0 0 0
GTG 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 3 2 0 1 0 0 0 0 0 0 0 0 0
GCT 3 1 2 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 0 1 0 0 0 0 0 0 0 0 0 0
CTG 2 2 0 0 0 0 0 0 0 0 0 0 0
CGA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 2 ATT + 1 TTA + 1 TAT = 5
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 1 CAA + 0 GTT + 2 TTG + 1 TGT = 4
0 ATG + 0 TGA + 0 GAT + 1 CAT + 1 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 3 GCA + 1 CAG + 3 GCT + 2 CTG + 6 TGC = 16
0 ACG + 1 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 1 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298081|gb|AE003641.1|AE003641 Drosophila melanogaster genomic scaffold 142000013386055 section 34 of 63, complete sequence
Position Repeat Coverage Repeat
17263 TAT * 7 19/21 TAT TAT TAT TAT TAA CAT TAT
20741 TGT * 7 19/21 TGT TGT TGT TGT TGT TGC TTT
48290 ACA * 11 30/33 ACA ACA ACA ACA ACA ACA ACA ACA ACA GCA ATT
75388 GCT * 8 22/24 GCT GCT GCT GCT GCT TCT GCT GCA
96510 TGA * 8 22/24 TGA AGA TGA TGA TGA TGA TGG TGA
119514 GCT * 10 28/30 GCT CCT GCT GCT GCT GCT GCT GCT GCT GCC
161039 GCA * 8 22/24 GCA GCA GCA GCA GCA GCA GAC GCA
163264 GCA * 7 19/21 GCA GCA GTA GCA GCA CCA GCA
163575 AAT * 8 22/24 AAT AAT AAT AAT AAT AAT AAC AAC
225553 AAT * 7 19/21 AAT AAT AAT AAT GAT AAT AAA
233274 CAT * 7 20/21 CAT CAT CAT CAT CAT CGT CAT
262656 TTG * 7 19/21 TTG ATG TTG TTG TTC TTG TTG
265045 TGT * 9 25/27 TGT TGT TGT TTC TGT TGT TGT TGT TGT
271030 GTT * 7 19/21 GTT GTT GCT GTT GTT ATT GTT
-----------------------------------------------------------------------------------------
Total sequence length......................... 299556
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 2 2 0 0 0 0 0 0 0 0 0 0 0
ACA 1 0 1 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 2 2 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
GCT 2 1 1 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
2 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 3
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 0 CAA + 1 GTT + 1 TTG + 2 TGT = 5
0 ATG + 1 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 2 GCA + 0 CAG + 2 GCT + 0 CTG + 0 TGC = 4
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298054|gb|AE003640.1|AE003640 Drosophila melanogaster genomic scaffold 142000013386055 section 33 of 63, complete sequence
Position Repeat Coverage Repeat
79014 ATG * 8 22/24 ATG ATG ATG ATG ATG ATG ATA AGG
81175 AAT * 7 19/21 AAT AAG AAT AAT AAT AAT TAT
105416 CGC * 7 19/21 CGC CGC CGC AGC CGC CTC CGC
116512 CAG * 11 32/33 CAG CAG AAG CAG CAG CAG CAG CAG CAG CAG CAG
116716 CAG * 8 23/24 CAG CAA CAG CAG CAG CAG CAG CAG
116965 ACG * 7 20/21 ACG ACG ACC ACG ACG ACG ACG
117455 CGT * 7 19/21 CGT CGT CGT CCT CGT CGT CGA
131437 TGC * 7 19/21 TGC AGC TGC TGC TGC AGC TGC
131558 GTT * 7 19/21 GTT GTA GCT GTT GTT GTT GTT
164350 CAA * 7 19/21 CAA CAA CAA CAA CAG CAA CAG
165458 TGC * 8 23/24 TGC TGC TGC TGC TGC TGT TGC TGC
198211 GGT * 7 19/21 GGT GGT GGT GGT GGG GGG GGT
199290 AAT * 14 38/42 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAA AAA TAA
216030 TCG * 8 22/24 TCG TCC TCG TCG TCG TCG TCG TCA
236694 CAT * 8 22/24 CAT CAT CAT CAT CAT CGC CAT CAT
242202 TCA * 7 19/21 TCA TCC TCC TCA TCA TCA TCA
254222 GCG * 7 19/21 GCG GCG GCG GCG GTG GAG GCG
254914 CCA * 7 19/21 CCA ACA CCA CAA CCA CCA CCA
255849 GCA * 10 27/30 GCA GCA GCA GCA GCA GCA TCA GCA GCA ACT
262324 AAC * 11 30/33 AAC AAC AAC AAC AAC AAG AAC AAC AGC AAC AGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 267510
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 2 1 0 1 0 0 0 0 0 0 0 0 0
AAC 1 0 1 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
ACG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 0 1 0 0 0 0 0 0 0 0 0 0
GCG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 1 1 0 0 0 0 0 0 0 0 0 0
CGT 1 1 0 0 0 0 0 0 0 0 0 0 0
CGC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
2 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 1 CAA + 1 GTT + 0 TTG + 0 TGT = 3
1 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 1 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 1 GCA + 2 CAG + 0 GCT + 0 CTG + 2 TGC = 5
1 ACG + 0 CGA + 0 GAC + 1 CGT + 0 GTC + 1 TCG = 3
0 ACC + 1 CCA + 0 CAC + 1 GGT + 0 GTG + 0 TGG = 2
0 GGC + 1 GCG + 0 CGG + 0 GCC + 0 CCG + 1 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298000|gb|AE003639.1|AE003639 Drosophila melanogaster genomic scaffold 142000013386055 section 32 of 63, complete sequence
Position Repeat Coverage Repeat
45502 GAG * 7 19/21 GAG GAG GAG GAG GAA GAG GAC
45526 GAG * 9 25/27 GAG GAG GAG GAG GAG GAC GAC GAG GAG
150760 GCC * 7 19/21 GCC GCC GCC ACC ACC GCC GCC
150825 CAC * 7 19/21 CAC CCC CAC CAC CAC CCC CAC
151656 AGC * 10 27/30 AGC CGC AGC AAC AGC AGC AGC AGC AGC AAC
151786 GCA * 7 20/21 GCA GCA GCA GCA GCA ACA GCA
151810 GCA * 7 19/21 GCA ACA GCA GCA GCA ACA GCA
151834 GCA * 7 19/21 GCA ACA GCA GCA GCA ACA GCA
151880 CAG * 7 19/21 CAG CAG CTG CAG CAA CAG CAG
151948 GCA * 18 50/54 GCA GCA GCA GCA ACA GCA GCA ACA GCA GCA ACA GCA GCA GCA ACA GCA GCA GCA
153071 CAG * 11 31/33 CAG CAG CAG CAG CAG CCA CAG CAG CAG CAG CAG
184243 GCT * 7 19/21 GCT GCT GCT GCT GCT GTT GGT
187630 CTG * 7 19/21 CTG CTG CTG CAG TTG CTG CTG
187712 TGC * 14 38/42 TGC TGC TGC TGC TGC TGA TGA TGC TGC TGC TGC TGC TGT TGT
187804 ACC * 7 19/21 ACC ACC ACC ACC ACC CCG ACC
188775 CTG * 8 22/24 CTG CTG CTG CTG CTG CTG TTG TTG
188809 TGC * 7 20/21 TGC TGC TGC TGC TGG TGC TGC
189012 CTG * 7 19/21 CTG CAG TTG CTG CTG CTG CTG
189056 GCT * 7 19/21 GCT GCT GGT GCT GTT GCT GCT
201669 CCT * 10 28/30 CCT CCT CCT CCT CCT CCT CCT CCT CCT CTA
232187 CCA * 7 19/21 CCA CCA CCA CCG CCA CCG CCA
233290 TGC * 7 19/21 TGC TGC TGC TTC TGC TGA TGC
233320 TGC * 8 22/24 TGC TGT TGC TGC TGC TGC TGT TGC
237995 CAG * 9 25/27 CAG CAG CAG GAG CAG CAG CAG CAA CAG
252635 CCT * 7 20/21 CCT CCT CCT CCT CAT CCT CCT
253237 ACA * 7 19/21 ACA ACA ACA GGA ACA ACA ACA
-----------------------------------------------------------------------------------------
Total sequence length......................... 261590
Total number of repeats detected.............. 26
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGC 1 0 1 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 4 3 0 1 0 0 0 0 0 0 0 0 0
GAG 2 2 0 0 0 0 0 0 0 0 0 0 0
GCA 4 3 0 0 1 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 3 2 1 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 3 3 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 2 1 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 2 GAG + 2 CCT + 0 CTC + 0 TCC = 4
1 AGC + 4 GCA + 3 CAG + 2 GCT + 3 CTG + 4 TGC = 17
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
1 ACC + 1 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 3
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7297983|gb|AE003638.1|AE003638 Drosophila melanogaster genomic scaffold 142000013386055 section 31 of 63, complete sequence
Position Repeat Coverage Repeat
13771 GAT * 7 19/21 GAT GGC GAT GAT GAT GAT GAT
16981 GCT * 8 22/24 GCT CCT GCT GCC GCT GCT GCT GCT
24130 AGC * 7 19/21 AGC AGC AGC AAC ACC AGC AGC
24153 CAG * 8 22/24 CAG CAG CAG CAG CAG CAA CAT CAG
30854 CAG * 15 41/45 CAG CAG CAA CAG CAG CAG CAG AAG CAG CAG CAG GAG CAG CAG CAA
64954 CTG * 7 19/21 CTG CTG CTG CTA CTT CTG CTG
91195 TTG * 7 20/21 TTG TTG TTG TTG TTG TTG TTA
93109 AGC * 7 20/21 AGC AGC AGC AGC AGC AGA AGC
153341 CTC * 8 22/24 CTC CTC CTC CGC CTC CTC CTG CTC
156504 GCT * 8 22/24 GCT GCT GTT GCT GCT GCT GCT GCA
163914 TGC * 7 20/21 TGC TGT TGC TGC TGC TGC TGC
166400 TTG * 7 19/21 TTG TTG TTG TTG TTT TTC TTG
175421 AGC * 12 33/36 AGC AGC AGC AGC AGC AGC AGC AGC AGC AGC AGA AAA
175463 CAG * 8 22/24 CAG CAA CAG CAG CCG CAG CAG CAG
177101 GCA * 8 22/24 GCA GCA GCA GCA GCA GCA GCA ACC
177151 GCA * 12 34/36 GCA GCA GCA GCA GCA GCG GCA GCG GCA GCA GCA GCA
198009 TCG * 8 23/24 TCG TTG TCG TCG TCG TCG TCG TCG
199930 CTG * 11 30/33 CTG CTG CCG CTG CTG CTG CCG CTG CTG TTG CTG
204652 GAT * 7 19/21 GAT GAT GAT GAT GAC GAT GAC
212429 CTG * 8 23/24 CTG CTG CTG CTG CTG TTG CTG CTG
225996 CTG * 11 30/33 CTG CTG CTG CGA CTG CTG CTG CTG CTG CTG ATG
228700 TGG * 7 19/21 TGG CGG TAG TGG TGG TGG TGG
237757 GCA * 8 23/24 GCA GCA GCA GCA GCA GCC GCA GCA
242807 TCA * 7 19/21 TCA TCG ACA TCA TCA TCA TCA
-----------------------------------------------------------------------------------------
Total sequence length......................... 253648
Total number of repeats detected.............. 24
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGC 3 2 1 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCA 3 2 1 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 3 2 0 1 0 0 0 0 0 0 0 0 0
CTG 4 2 2 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 2 TTG + 0 TGT = 2
0 ATG + 0 TGA + 2 GAT + 0 CAT + 0 ATC + 1 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 1
3 AGC + 3 GCA + 3 CAG + 2 GCT + 4 CTG + 1 TGC = 16
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 1 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 1 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7297962|gb|AE003637.1|AE003637 Drosophila melanogaster genomic scaffold 142000013386055 section 30 of 63, complete sequence
Position Repeat Coverage Repeat
16690 AGC * 10 27/30 AGC AGC AGC ATC AGC AGC AGC AGC AAC AAC
16794 CAG * 8 22/24 CAG CAG CAG CAG CAG CAA CAG CAA
16826 GCA * 7 19/21 GCA ACT GCA GCA GCA GCA GCA
32980 CAG * 8 23/24 CAG CAG CAG CAG CAG CAG CAG CAA
67294 CCA * 7 19/21 CCA CCT CCG CCA CCA CCA CCA
128567 ATT * 8 22/24 ATT ATT GTT ATT ATT ATT TTT ATT
159623 GCT * 17 46/51 GCT GCT GCT GCT GCT GCT GCT GCT GCT TCT GCT TCT TCT GCT GTT GCT GCC
202037 TGT * 10 27/30 TGT TGT TGT TGT TGT TAT TAT TGT TGT TGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 224205
Total number of repeats detected.............. 8
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 0 1 0 0 0 0 0 0 0 0 0 0
TGT 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 1 0 0 0 1 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 1 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 1 TGT = 1
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 1 GCA + 2 CAG + 1 GCT + 0 CTG + 0 TGC = 5
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 1 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7297938|gb|AE003636.1|AE003636 Drosophila melanogaster genomic scaffold 142000013386055 section 29 of 63, complete sequence
Position Repeat Coverage Repeat
5093 TGA * 7 19/21 TGA TGA TGA TGA TGA GGA TGC
34056 CAG * 7 19/21 CAG CAG CAG CAT CAG CAT CAG
34082 GCA * 8 22/24 GCA GCA GCA GCA GCA GTA GCA ACA
60346 TGC * 7 19/21 TGC TGC TGC TGC CGC TGC TGA
87020 GCA * 7 19/21 GCA GCA GCA GCA GCA TCA GCG
117866 CAT * 7 20/21 CAT CAT CAT CAT TAT CAT CAT
139054 CTG * 9 25/27 CTG ATG CTG CTG CTG CTG CTG TTG CTG
139185 CTG * 10 27/30 CTG CGG CTG CTG CTG CTG CTG CTG CTC CTA
139457 TGC * 8 22/24 TGC TGC TGC TGC TGC TGT TGC TCC
139563 GCT * 8 23/24 GCT GCT GCT GCT GCT GCT GTT GCT
139854 GCT * 8 23/24 GCT GCT GCT GCT GCT GTT GCT GCT
140291 TGC * 11 30/33 TGC TGC TGC TGC TGC TGT TGC TGC TGC TGC TCG
141154 CTG * 8 22/24 CTG TTG CTG CTG CTG CTG CTG GTG
141188 TGA * 8 22/24 TGA TGG TGG TGA TGA TGA TGA TGA
141375 GCT * 7 19/21 GCT GCT GCT GTT GCT GCT GCG
141830 TGC * 7 20/21 TGC TGT TGC TGC TGC TGC TGC
141876 CTG * 8 22/24 CTG TTG CTG CTG CTG CTG CTA CTG
142829 ACA * 7 19/21 ACA CCG ACA ACA ACA ACA ACA
143977 ATG * 7 19/21 ATG ATG ACG ATG TTG ATG ATG
179055 GAT * 8 23/24 GAT GAT GAT GAT GTT GAT GAT GAT
195892 GCA * 8 22/24 GCA GCA GCA ACA ACA GCA GCA GCA
195921 AAC * 7 19/21 AAC AGC AAC AGC AAC AAC AAC
196119 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAA CAT
196292 GCA * 7 19/21 GCA GCA GCA GCA GCA ACA GCC
200402 TCG * 7 20/21 TCG TCT TCG TCG TCG TCG TCG
200612 TGT * 7 19/21 TGT TGT TGT TGT TGT TGC TGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 245782
Total number of repeats detected.............. 26
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 2 2 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 4 3 1 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 4 4 0 0 0 0 0 0 0 0 0 0 0
GCT 3 3 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CTG 4 3 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 1 ACA + 0 CAA + 0 GTT + 0 TTG + 1 TGT = 3
1 ATG + 2 TGA + 1 GAT + 1 CAT + 0 ATC + 0 TCA = 5
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 4 GCA + 2 CAG + 3 GCT + 4 CTG + 4 TGC = 17
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 1 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7297915|gb|AE003635.1|AE003635 Drosophila melanogaster genomic scaffold 142000013386055 section 28 of 63, complete sequence
Position Repeat Coverage Repeat
6532 GTC * 7 19/21 GTC GTC GTC GTC GTC ATC ATC
14373 AAC * 8 22/24 AAC AAC AAC AAC AAC AGC AAC CAC
39653 GCA * 7 20/21 GCA GCA ACA GCA GCA GCA GCA
101589 GCT * 7 19/21 GCT GCT CCT GCT GCT GTT GCT
178356 CAA * 8 23/24 CAA GAA CAA CAA CAA CAA CAA CAA
182089 AAC * 8 22/24 AAC AAC AAC AAC AAT AAC AGC AAC
199544 TCA * 7 19/21 TCA TCA TCA TTA TCA TTA TCA
199566 CAG * 8 22/24 CAG AAG CAG CAG CAG CAG CAG CGG
199618 AGC * 10 27/30 AGC AAC ATC AGC AGC AGC AGC AGC AGC AGG
201669 AGT * 7 19/21 AGT AGT GGT AGT AGT AGT AGA
205135 ACA * 7 20/21 ACA ACA ACA ACA ACA ACA ACT
207096 GCT * 7 19/21 GCT GCT ACT GCT GCT GCT GCA
207238 ATG * 8 23/24 ATG ATG ATA ATG ATG ATG ATG ATG
214965 CGC * 7 19/21 CGC CGC AGC CGC CGC CGC AGC
240059 ACA * 8 22/24 ACA ACA ACA ACA GCA ACA ACA GCA
262456 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CTG
262597 GCA * 11 30/33 GCA GCA GCA GCA ACA GCA ACA GCA GCA GCA ACA
262677 CAG * 11 30/33 CAG CAG CAG CAG CAG CAG CAG CAG CAA CAT CCG
263001 GCA * 8 22/24 GCA GCA GCA ACA GCA GCA ACA GCA
281980 ATA * 8 22/24 ATA ATA ATA ATA ATA ATA ATA CGA
284260 CAA * 7 19/21 CAA CAA CAA CAA CAA CAA TAG
289831 TGC * 9 25/27 TGC TGC CGA TGC TGC TGC TGC TGC TGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 307911
Total number of repeats detected.............. 22
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 2 2 0 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 0 1 0 0 0 0 0 0 0 0 0 0
ACA 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GTC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 3 2 1 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 3 2 1 0 0 0 0 0 0 0 0 0 0
CGC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
2 AAC + 2 ACA + 2 CAA + 0 GTT + 0 TTG + 0 TGT = 6
1 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 1 TCA = 2
1 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 3 GCA + 3 CAG + 2 GCT + 0 CTG + 1 TGC = 10
0 ACG + 0 CGA + 0 GAC + 0 CGT + 1 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 1 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7297877|gb|AE003634.1|AE003634 Drosophila melanogaster genomic scaffold 142000013386055 section 27 of 63, complete sequence
Position Repeat Coverage Repeat
49893 ATT * 7 19/21 ATT ATT ATT ATT TAT ATT ATT
55270 TGG * 7 20/21 TGG TGG TGG TGG TGG TGT TGG
76298 TGA * 12 34/36 TGA TGA TGG TGA TCA TGA TGA TGA TGA TGA TGA TGA
82206 TTG * 7 19/21 TTG TTG CTG TTG TAG TTG TTG
91197 CAC * 7 19/21 CAC CCA CAC CAC CAC CAC CAC
92190 AGC * 7 19/21 AGC AAC AAC AGC AGC AGC AGC
120749 CAG * 8 22/24 CAG CAG CAG CAG CAA CAG CAG CTG
125557 TGT * 8 22/24 TGT TGT TGT TGT TGT AGT TGC TGT
138458 CAT * 8 22/24 CAT CGT CAT CAT CAT CAT CAT TAT
143952 TGC * 10 28/30 TGC CGC TGC TGC TGC TGC TGT TGC TGC TGC
169867 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC TGC ATC
173777 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC TGC ATC
179132 TGC * 10 28/30 TGC TGC TGC TTC TGC TGC TGC TGG TGC TGC
186000 GTG * 7 19/21 GTG GTT GTG GTG GTG ATG GTG
203557 ATC * 7 19/21 ATC GTC ATC ATC ATC ATC ATG
217425 TCC * 10 27/30 TCC TCC TCC TCC GCT TCC TCC TCC TCC TCA
217476 GTC * 7 19/21 GTC GTC GTC GTC GTC GTG GTT
221449 TTG * 7 19/21 TTG TTG TTG TTG TTG GTG TTC
-----------------------------------------------------------------------------------------
Total sequence length......................... 264752
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGA 1 0 1 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 4 2 2 0 0 0 0 0 0 0 0 0 0
TCC 1 0 1 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 1 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 2 TTG + 1 TGT = 3
0 ATG + 1 TGA + 0 GAT + 1 CAT + 1 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 1 TCC = 1
1 AGC + 0 GCA + 1 CAG + 0 GCT + 0 CTG + 4 TGC = 6
0 ACG + 0 CGA + 0 GAC + 0 CGT + 1 GTC + 0 TCG = 1
0 ACC + 0 CCA + 1 CAC + 0 GGT + 1 GTG + 1 TGG = 3
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7297859|gb|AE003633.1|AE003633 Drosophila melanogaster genomic scaffold 142000013386055 section 26 of 63, complete sequence
Position Repeat Coverage Repeat
17025 TAA * 8 22/24 TAA TAA TAA TAA TAA TAA TAA ATA
26568 TGA * 8 22/24 TGA TGA TAA TGA TGA TGA TGA TGT
65528 CAG * 8 22/24 CAG CAA CAG CAG CAG CAG CAA CAG
65771 CAG * 9 25/27 CAG CAG CAG CAG CAG CAA CAG CAG CAA
111220 GCA * 11 30/33 GCA GGA GCA GGA GCA GCA GCA GCA GCA GCA GGA
117592 GCA * 7 19/21 GCA TCA GCA GCA GCA GCC GCA
200753 ATT * 9 25/27 ATT ATT ATT ATT ATT ATT ATT ATT ACC
234766 CCT * 8 22/24 CCT CCT CCT TCT CCT CCT CTT CCT
239147 CTG * 7 19/21 CTG CTG TTG CTG CTG CTG GTG
253653 GCC * 8 22/24 GCC GCC GCC ACC GCC GCC GCC TCC
-----------------------------------------------------------------------------------------
Total sequence length......................... 266057
Total number of repeats detected.............. 10
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 1 1 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 1 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 1 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 1 CCT + 0 CTC + 0 TCC = 1
0 AGC + 2 GCA + 2 CAG + 0 GCT + 1 CTG + 0 TGC = 5
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7297846|gb|AE003632.1|AE003632 Drosophila melanogaster genomic scaffold 142000013386055 section 25 of 63, complete sequence
Position Repeat Coverage Repeat
31829 AGC * 7 19/21 AGC AGC AGA AGC AGC AGC AAC
44971 AGC * 7 19/21 AGC AGC AGC AGC AGC ACC ACC
44994 CAG * 7 19/21 CAG CAG CAG CAG CAG CAG TCG
57911 TCG * 7 20/21 TCG TCG TCG TCC TCG TCG TCG
65184 GCA * 11 31/33 GCA GCA GCA GCA GCA GCA TCA GCA GCA GCA GCG
65380 AGC * 7 19/21 AGC AGC AGC AGC AGC GGC AGT
70394 GCA * 7 19/21 GCA GCA AAA GCA GCA GCA GCA
91338 CAA * 7 21/21 CAA CAA CAA CAA CAA CAA CAA
91514 CAG * 12 33/36 CAG CAG CAA CAG CAA CAG CAG CAG CAG CAG CAG CAA
126730 TGC * 7 19/21 TGC TGC TGC TGT TGC TGT TGC
126897 TGC * 11 30/33 TGC TGC TGC TGT TGG TGC TGC TGC TGC TGC TGG
153248 CCG * 7 20/21 CCG CCG CCG CCG CCG ACG CCG
173468 CTG * 7 20/21 CTG CTG CTG CTG CTG CTG CTT
186641 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CAA
197973 TCC * 7 19/21 TCC TCC TCC ACC GCC TCC TCC
223536 CTG * 9 25/27 CTG CTA CTG CTG CTG CTG CTG CTG TTG
-----------------------------------------------------------------------------------------
Total sequence length......................... 244279
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGC 3 3 0 0 0 0 0 0 0 0 0 0 0
TGC 2 1 1 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 1 1 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 3 2 1 0 0 0 0 0 0 0 0 0 0
CTG 2 2 0 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 1 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 1 TCC = 1
3 AGC + 2 GCA + 3 CAG + 0 GCT + 2 CTG + 2 TGC = 12
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 1 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 1 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7297810|gb|AE003631.1|AE003631 Drosophila melanogaster genomic scaffold 142000013386055 section 24 of 63, complete sequence
Position Repeat Coverage Repeat
6005 GTT * 7 19/21 GTT GTT GCT GTT GTT CTT GTT
11071 AAT * 10 27/30 AAT AAT AAT AAT AAT AAT AAA AAT AAT GAA
16238 CTC * 7 20/21 CTC CTC CTC CTC CTC CTC CTT
17399 TGA * 13 36/39 TGA TGA TGA TGA CGA TGA TGA TGA TGA TGA TGA GGA TGC
21752 GCT * 7 19/21 GCT TCT GCT GCT GCT GCT GCG
25811 ATC * 9 25/27 ATC ATC ATC ATA ATC ATC ATA ATC ATC
28848 AGC * 8 22/24 AGC AGC AGC AGC AGA ACC AGC AGC
78354 GCC * 7 19/21 GCC GCC GCC GCC GCC GCC ACT
81241 TCC * 7 19/21 TCC TCG TCC TCA TCC TCC TCC
81548 CAG * 7 19/21 CAG CAG CAG CGG CAG CAG CTG
81775 CAG * 12 33/36 CAG CAG CAG CAA CAT CAG CAG CAG CAG CAG CAG CAA
128279 CGG * 7 20/21 CGG AGG CGG CGG CGG CGG CGG
129143 AGT * 11 30/33 AGT AGT AGT AGT AGT AGT ATG AGT AGT AGT GGT
135155 GCC * 7 19/21 GCC GCC GCC GCC GCT GCC GTC
137777 TGA * 7 19/21 TGA TGA AGA TGA CGA TGA TGA
148452 TAT * 7 19/21 TAT TAT TTT TAT TAT AAT TAT
159004 CTT * 8 22/24 CTT CTT CGT CTT CTT CTT ATT CTT
170783 CAA * 8 22/24 CAA CAA CAA CAA CAA CCA AAA CAA
183061 CAG * 8 22/24 CAG CAG CAG CAG CAC CAG CAG CAC
183614 CAA * 7 19/21 CAA TAA CAA CAA CAA CAA CAG
183656 CAA * 8 22/24 CAA CAA CAA TAA CAA TAA CAA CAA
183894 GCA * 7 19/21 GCA GCG GCA GCA GCA GCA GCG
183942 GCA * 7 19/21 GCA GCA GCG GCA GCA ACA GCA
196799 AAG * 7 19/21 AAG AAG AGG AAG AAG GAG AAG
199709 AAT * 7 19/21 AAT AAC AAT AAT AAT AAT AAG
202861 GCA * 8 22/24 GCA GCA GCA GGA GCA GCA GCA GCG
203111 CAG * 7 19/21 CAG CAG CAG CAA CAG CAG CAC
203261 CAG * 7 19/21 CAG CAG CAG CAC CAG CAG CAA
203288 CAG * 11 30/33 CAG CAG CAG CAT CAG CAG CAG CAG CAG CAG TAT
206894 ACT * 7 20/21 ACT ACT ACT ACT ACT ACT ACA
246316 GAT * 7 19/21 GAT GAT GAT GAT GAT GAC GAC
-----------------------------------------------------------------------------------------
Total sequence length......................... 261329
Total number of repeats detected.............. 31
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 2 1 1 0 0 0 0 0 0 0 0 0 0
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGT 1 0 1 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACT 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 2 1 0 1 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 3 3 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCC 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 3 3 0 0 0 0 0 0 0 0 0 0 0
CAG 6 4 2 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CGG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
2 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 3
1 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 2
0 AAC + 0 ACA + 3 CAA + 1 GTT + 0 TTG + 0 TGT = 4
0 ATG + 2 TGA + 1 GAT + 0 CAT + 1 ATC + 0 TCA = 4
1 AGT + 0 GTA + 0 TAG + 1 ACT + 0 CTA + 0 TAC = 2
0 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 1 TCC = 2
1 AGC + 3 GCA + 6 CAG + 1 GCT + 0 CTG + 0 TGC = 11
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 1 CGG + 2 GCC + 0 CCG + 0 CGC = 3
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7297758|gb|AE003630.1|AE003630 Drosophila melanogaster genomic scaffold 142000013386055 section 23 of 63, complete sequence
Position Repeat Coverage Repeat
6315 TGC * 8 22/24 TGC TGC TGC TGT TGT TGC TGC TGC
31804 CCG * 8 22/24 CCG CCG CCG CCG CCG CCG CCG CTC
47854 ATC * 8 23/24 ATC AAC ATC ATC ATC ATC ATC ATC
63753 CTG * 11 30/33 CTG TTG CTG CAG CTG CTG CTG CTG CTG CTG CAG
63787 TGC * 8 22/24 TGC TGT TGC TGC TGC TGC TGT TGC
73334 TGC * 7 19/21 TGC TCC TGC TGC TGC TGC TTC
73568 TTG * 7 19/21 TTG TTG CTG TTG TTG TTA TTG
73604 TGT * 10 27/30 TGT TGC TGT TGT TGA TGT TGT TGT TGT TGA
73730 TGC * 7 19/21 TGC TGC TGC TGC TGC TGT TGT
73751 TGT * 8 22/24 TGT TGT TGC TGC TGT TGT TGT TGT
73777 TTG * 11 31/33 TTG TTG TTG CTG TTG TTG TTG TTG TTG TTG TTT
73939 CTG * 7 20/21 CTG CTG TTG CTG CTG CTG CTG
79740 TGT * 9 25/27 TGT TAT TGT TGT TGT TGT TGT TGT TGG
148707 AAT * 7 20/21 AAT AAT AAT AAT AAT AAT ATT
158848 TGT * 11 30/33 TGT TGT TGT TGT TGT TGT TGC TGT TGC TGC TGT
193763 TTG * 7 19/21 TTG CTG TTG TTG TTG TTG CTG
196616 AGC * 8 22/24 AGC AGC GAC AGC AGC AGC AGC AGC
196832 CCA * 7 20/21 CCA CCA CCA CCA CCA CCG CCA
199251 ATA * 7 19/21 ATA AGT ATA ATA ATA ATA ATA
238196 TGC * 8 22/24 TGC TGC TGC TGC CGC TGC TGC TAC
239132 CTG * 14 38/42 CTG CTG CTG CTG CTG CTG CTG CTG CTG GTG GTG CTG CTG CAA
239686 TGG * 10 27/30 TGG TGG CGG TGG TGG TGC TGG TGG TGG TGC
240607 TAT * 25 69/75 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT ATT AAA GAC
248457 TGC * 10 27/30 TGC TGC TGT TGC TGC TGC TGC TGC TGC TCG
251560 GCA * 10 27/30 GCA GCA GCA CCA GCA GCA GCA GCA GCT CCA
253362 TGC * 8 22/24 TGC TGC TGC TGC TGC TGT TGT TGC
254216 TCC * 7 19/21 TCC TCC TGC TCC TCC GCC TCC
254687 TGC * 9 25/27 TGC TGC TGC TGT TGC TGT TGC TGC TGC
254824 GAT * 7 19/21 GAT GCA GAT GAT GAT GAT GAT
254960 CAC * 7 19/21 CAC CAC CAC CAG CAC CAC CGC
259526 TGC * 10 27/30 TGC TGC TGC TGC TGC TGC TAC TGC TGT TGT
259556 TGT * 11 30/33 TGT TGT TGA TGG TGT TGT TGT TGT TGT TAT TGT
259802 CAC * 9 25/27 CAC CAC CAC CAC CAC CAC CCG CAC CAC
263775 ATG * 7 20/21 ATG CTG ATG ATG ATG ATG ATG
266906 ATA * 7 19/21 ATA ATA ATA ATA ATA AAA AAA
268991 CAA * 7 19/21 CAA TAA CAA CAA AAA CAA CAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 276576
Total number of repeats detected.............. 36
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 2 2 0 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 0 0 0 0 0 0 1 0 0 0 0 0
TTG 3 2 1 0 0 0 0 0 0 0 0 0 0
TGT 5 2 3 0 0 0 0 0 0 0 0 0 0
TGG 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 9 7 2 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 0 1 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAC 2 2 0 0 0 0 0 0 0 0 0 0 0
CTG 3 1 1 1 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 2 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 4
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 1 CAA + 0 GTT + 3 TTG + 5 TGT = 9
1 ATG + 0 TGA + 1 GAT + 0 CAT + 1 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 1 TCC = 1
1 AGC + 1 GCA + 0 CAG + 0 GCT + 3 CTG + 9 TGC = 14
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 1 CCA + 2 CAC + 0 GGT + 0 GTG + 1 TGG = 4
0 GGC + 0 GCG + 0 CGG + 0 GCC + 1 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7297715|gb|AE003629.1|AE003629 Drosophila melanogaster genomic scaffold 142000013386055 section 22 of 63, complete sequence
Position Repeat Coverage Repeat
66461 ATG * 10 27/30 ATG ATG ATG ATT ATG ATG ATG ATG ATG ACA
72446 ATT * 10 27/30 ATT ATT ACA ATT ATT ATT ATT ATT ATT TTT
186037 GCC * 7 19/21 GCC GCC ACC GCC GCC TCC GCC
218118 GCT * 8 22/24 GCT GCT ACT GCT GCT GTT GCT GCT
230947 GAC * 10 28/30 GAC GAC GAC GAT GAC GAT GAC GAC GAC GAC
248750 CTG * 10 27/30 CTG CTG CTG CTG CTG CTT CTG CTG CTG CGA
255538 GCA * 8 22/24 GCA GCA GCA GCA ACC GCA GCA GCA
255697 GCA * 8 22/24 GCA GCA GCA GCT GCC GCA GCA GCA
-----------------------------------------------------------------------------------------
Total sequence length......................... 260791
Total number of repeats detected.............. 8
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATT 1 0 1 0 0 0 0 0 0 0 0 0 0
ATG 1 0 1 0 0 0 0 0 0 0 0 0 0
GAC 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 1 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
1 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 2 GCA + 0 CAG + 1 GCT + 1 CTG + 0 TGC = 4
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7297628|gb|AE003628.1|AE003628 Drosophila melanogaster genomic scaffold 142000013386055 section 21 of 63, complete sequence
Position Repeat Coverage Repeat
64424 TGA * 7 19/21 TGA TGA TGG TGG TGA TGA TGA
155224 GCA * 7 20/21 GCA GCA GCA GCA GCA GCA ACA
164758 GCA * 11 31/33 GCA GCA GCA GCA GCA GCA GCA GCA ACA GCA ACA
-----------------------------------------------------------------------------------------
Total sequence length......................... 270055
Total number of repeats detected.............. 3
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 1 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 1 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 2 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 2
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7297589|gb|AE003627.1|AE003627 Drosophila melanogaster genomic scaffold 142000013386055 section 20 of 63, complete sequence
Position Repeat Coverage Repeat
6727 GAT * 11 30/33 GAT GAT TAT GGT GAT GAT GAT GAT GAT GAT GAC
6997 CAT * 8 22/24 CAT TAT CAT CAT CGT CAT CAT CAT
7857 CAT * 8 23/24 CAT CAT CAT CAT CAT CAT CCT CAT
7896 CAT * 7 20/21 CAT CAT CAT CAT CAT CAT CTT
8437 GTG * 7 20/21 GTG GTG GTG GTG TTG GTG GTG
13564 ATT * 7 19/21 ATT CAT ATT ATT ATT ATT ATT
17747 CAG * 7 19/21 CAG CAG CAG CAG CAA CAG CAA
17921 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CTT CAG
18425 CAG * 14 39/42 CAG CAG CAG CAG CAG CAA CAA CAG CAG CAG CAG CAG CAA CAG
32646 TAA * 7 19/21 TAA TAA TAA TAA TAA GAA TAT
40610 GGT * 8 23/24 GGT GGT GGT GGT GGT GGT GGT GCT
53378 GCT * 8 22/24 GCT GCT GCT GCT GCT GCT GCT GGC
59354 GCA * 8 22/24 GCA GCA GCA GCA GCA GCA GCA ACT
62709 AGG * 10 29/30 AGG AGG AGG AGG AGG AGG AGG AGG AGT AGG
79539 CAG * 10 28/30 CAG CAG CAG CAG CAG GAG CAG CAG CAG CAA
83844 ACA * 9 26/27 ACA ACA ACA ACA ACA ACA ACA ACA ACT
93649 GCA * 8 22/24 GCA TCA GCA GCA GCA GCA GAA GCA
94735 AAT * 7 20/21 AAT AAT AAT AAT AAC AAT AAT
105816 GGA * 8 22/24 GGA GGA GGA GGC GGT GGA GGA GGA
107130 GAT * 7 19/21 GAT GAT GAT GAT GAT GAT GGG
119225 CCA * 11 30/33 CCA CCA CCA CCA CCA CCA CCA CCT CCT CCT CCA
147969 ACC * 11 30/33 ACC ATC GCC ACC ACC ACC ACC ACC ACC ACC ACG
172216 AGG * 7 19/21 AGG AGC AAG AGG AGG AGG AGG
175477 CAG * 7 19/21 CAG CAG CAG CAG AAG CAA CAG
175499 AGC * 7 19/21 AGC AGC AGC AGC AGC AGG AGA
222789 ATT * 7 19/21 ATT ATT ATT ATT ATT CTT TTT
-----------------------------------------------------------------------------------------
Total sequence length......................... 260794
Total number of repeats detected.............. 26
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 2 2 0 0 0 0 0 0 0 0 0 0 0
AGG 2 1 1 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
ACC 1 0 1 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 2 1 1 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 3 3 0 0 0 0 0 0 0 0 0 0 0
CAG 5 3 1 1 0 0 0 0 0 0 0 0 0
CCA 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 1 TAA + 2 ATT + 0 TTA + 0 TAT = 4
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 0 TGA + 2 GAT + 3 CAT + 0 ATC + 0 TCA = 5
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
2 AGG + 1 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 3
1 AGC + 2 GCA + 5 CAG + 1 GCT + 0 CTG + 0 TGC = 9
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
1 ACC + 1 CCA + 0 CAC + 1 GGT + 1 GTG + 0 TGG = 4
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7297545|gb|AE003626.1|AE003626 Drosophila melanogaster genomic scaffold 142000013386055 section 19 of 63, complete sequence
Position Repeat Coverage Repeat
12295 GCT * 7 19/21 GCT GCT GCT TTT GCT GCT GCT
25465 TGA * 8 22/24 TGA CGA TGA TGA TGA TGA TGT TGA
30989 TTG * 10 27/30 TTG TTG ATG TTG TTG TTT TTG TTG TTG CTG
34139 TGC * 7 19/21 TGC TGC TGC TGC GGC TGC GGC
34897 TGC * 14 38/42 TGC CAC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TAT
42307 TGC * 11 31/33 TGC TGC TGC TGC TGC TGC TGC TAC TGC CGC TGC
74139 AGC * 10 28/30 AGC AAC AGC AGC AAC AGC AGC AGC AGC AGC
95229 TTA * 7 19/21 TTA TTA TTA TTA TTA TTT TTT
113561 CAT * 11 30/33 CAT CAT CAT CAT CAT CAT CAT CGT CAT CGT CAC
124817 CAT * 7 19/21 CAT CGT CAT TAT CAT CAT CAT
164673 ACA * 7 19/21 ACA GCA ACA ACC ACA ACA ACA
165289 TGA * 7 19/21 TGA TGT TAA TGA TGA TGA TGA
168966 TTG * 7 19/21 TTG TTG TTG TTG TTG TTA TTT
170641 TGT * 8 22/24 TGT CGA TGT TGT TGT TGT TGT TGT
171964 TTG * 7 19/21 TTG TTG CTG TTG TTG TTT TTG
217111 CAG * 7 19/21 CAG CAC CAG CAA CAG CAG CAG
218421 CTC * 7 19/21 CTC CTC CTC GTC CTC CCC CTC
239947 TGT * 9 25/27 TGT TGC CGT TGT TGT TGT TGT TGT TGT
261794 CCT * 7 19/21 CCT CCT CCT CAT CCT CCT CAT
263646 CAG * 7 19/21 CAG CCG TAG CAG CAG CAG CAG
263891 TAT * 7 19/21 TAT TAT TAT TAT TAT TAT ATT
264008 TTA * 10 27/30 TTA TTA TTA TTA TTG ATA TTA TTA TTA ATA
-----------------------------------------------------------------------------------------
Total sequence length......................... 265236
Total number of repeats detected.............. 22
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGC 1 0 1 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 2 1 1 0 0 0 0 0 0 0 0 0 0
TTG 3 2 1 0 0 0 0 0 0 0 0 0 0
TGA 2 2 0 0 0 0 0 0 0 0 0 0 0
TGT 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 3 1 1 1 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 2 1 1 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 2 TTA + 1 TAT = 3
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 0 CAA + 0 GTT + 3 TTG + 2 TGT = 6
0 ATG + 2 TGA + 0 GAT + 2 CAT + 0 ATC + 0 TCA = 4
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 1 CCT + 1 CTC + 0 TCC = 2
1 AGC + 0 GCA + 2 CAG + 1 GCT + 0 CTG + 3 TGC = 7
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7297520|gb|AE003625.1|AE003625 Drosophila melanogaster genomic scaffold 142000013386055 section 18 of 63, complete sequence
Position Repeat Coverage Repeat
19530 TCT * 7 19/21 TCT TCT TCT TCT TCT CCT TCA
26055 ATC * 14 38/42 ATC ATC ATC ACC GTC ATC ATC ATC ATC ATC ATC ATC ATT GTC
26856 TGC * 7 19/21 TGC CAC TGC TGC TGC TGC TGC
33652 TGC * 7 19/21 TGC CAC TGC TGC TGC TGC TGC
39635 GTG * 7 19/21 GTG GTG GGG GTG GTG GTG GGG
41240 CAT * 10 28/30 CAT CAT CAT CAT CAT CAT CAT CAT CAC CAG
64436 TTG * 7 20/21 TTG TTG TTG TTG TTC TTG TTG
84027 GGA * 7 19/21 GGA GAA GGA GGA GCA GGA GGA
104212 GCT * 11 30/33 GCT GCT GCT GCT GCT GTT GCT GTT GCT GCT GCA
104444 CTG * 10 27/30 CTG TTG CTG CTG CTG GTG CTG CTG CTG GTG
104632 GCT * 8 22/24 GCT GCT GCT GCT GTT GCT GCT GCA
104735 CTG * 7 20/21 CTG CTG CTG CTG CTG CTG TTG
107551 TGC * 7 19/21 TGC TGC TGC TGC TGC TGC AGT
107578 TGC * 8 22/24 TGC TGC TGT TGC TGT TGC TGC TGC
121035 TTG * 7 19/21 TTG TTG TTG TTG TTG TTG TCT
122320 TGT * 7 19/21 TGT TGT TGT TGT TAC TGT TGT
123926 AAT * 7 19/21 AAT AAT AAT AAT AAT AAC AAC
140128 TGA * 11 30/33 TGA TGA TGA TGA TGA TGA TGA TGA CGA CGA TGG
158801 CAG * 8 23/24 CAG CAG CAG CGG CAG CAG CAG CAG
160210 CTG * 7 19/21 CTG CTG CTG CCG CTG CTG CTC
164151 ACC * 7 19/21 ACC ACC ATC ACC ATC ACC ACC
168952 ACC * 7 19/21 ACC ATC GCC ACC ACC ACC ACC
207849 GCA * 8 22/24 GCA GCA GCA GCA GCA GCA GCA ACG
219444 CAG * 8 22/24 CAG CAG CAG CAT CAA CAG CAG CAG
219471 CAG * 11 30/33 CAG CAA CAG CAG CAG CAA CAG CAG CAG CAA CAG
221010 CAA * 7 19/21 CAA TAA CAA CAA CAC CAA CAA
221487 GAT * 9 25/27 GAT GAT GAT GAT GAT GAT GAT GAT GGC
223213 CAA * 11 31/33 CAA CAA CAA CAA CAA CAA CAA CAA CAG CAA CGA
224690 ACA * 7 19/21 ACA ACA ACA ATA GCA ACA ACA
227348 TTA * 8 22/24 TTA TTA TTA TTA TTA TTT TTT TTA
242696 GAT * 8 22/24 GAT GGT GAT GGT GAT GAT GAT GAT
254803 TCG * 10 27/30 TCG TTG TCG TCG TCG TCG TCG TCG TTG TTG
257128 GCA * 8 22/24 GCA GCA GCA GCA GCA GCA ACA GCT
-----------------------------------------------------------------------------------------
Total sequence length......................... 260624
Total number of repeats detected.............. 33
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 0 0 1 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
ACC 2 2 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGA 1 0 1 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 4 4 0 0 0 0 0 0 0 0 0 0 0
TCT 1 1 0 0 0 0 0 0 0 0 0 0 0
TCG 1 0 1 0 0 0 0 0 0 0 0 0 0
GAT 2 2 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
GCT 2 1 1 0 0 0 0 0 0 0 0 0 0
CAA 2 1 1 0 0 0 0 0 0 0 0 0 0
CAT 1 0 1 0 0 0 0 0 0 0 0 0 0
CAG 3 2 1 0 0 0 0 0 0 0 0 0 0
CTG 3 2 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 1 TCT = 1
0 AAC + 1 ACA + 2 CAA + 0 GTT + 2 TTG + 1 TGT = 6
0 ATG + 1 TGA + 2 GAT + 1 CAT + 1 ATC + 0 TCA = 5
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 1
0 AGC + 2 GCA + 3 CAG + 2 GCT + 3 CTG + 4 TGC = 14
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 1 TCG = 1
2 ACC + 0 CCA + 0 CAC + 0 GGT + 1 GTG + 0 TGG = 3
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7297497|gb|AE003624.1|AE003624 Drosophila melanogaster genomic scaffold 142000013386055 section 17 of 63, complete sequence
Position Repeat Coverage Repeat
1882 TGC * 8 22/24 TGC TGC TGT TGT TGC TGC TGC TGC
28477 AAC * 10 27/30 AAC AAC AAC AAC AAC AGC AAC AAC AGC AAA
34046 CAG * 9 25/27 CAG CAG CAG CAG CAG CAG CAG CAT TAG
34392 CAG * 7 19/21 CAG CAC CAG CAT CAG CAG CAG
38562 TAT * 8 22/24 TAT AAT TAT TAT TAT TAT TAT TAC
40580 GCA * 8 22/24 GCA GCA GCA ACA ACA GCA GCA GCA
41157 CAG * 8 22/24 CAG CAG CAG CAG CAG CAA CAA CAG
42082 AGC * 10 27/30 AGC AGC AGC AAC AGC AGC AGC AGC AAC AAC
44326 CAG * 22 60/66 CAG CAG CAG CAA CAG CAG CAA CAG CAG CAG CAA CAG CAG CAG CAT CAG CAG CAG CAA CAT CAG CAG
52122 TGC * 7 20/21 TGC GGC TGC TGC TGC TGC TGC
91239 ACA * 8 22/24 ACA ACA ACA AGA ACA ACA ACA GCA
91417 ACT * 7 19/21 ACT ACT ACT ACT ATT ACA ACT
95653 TGA * 7 20/21 TGA TGT TGA TGA TGA TGA TGA
116250 TCA * 9 25/27 TCA TCA TCA TCA TCA TAA TCA TCA TCT
131513 CAT * 11 30/33 CAT CAA CAA CAT CAT CAT CAT CAT CAT TAT CAT
140855 CGA * 8 22/24 CGA TGA CTA CGA CGA CGA CGA CGA
177852 CGG * 7 19/21 CGG CGG GGG CGG CTG CGG CGG
205120 ATG * 9 25/27 ATG ATG TTG ATG ATG ATG ATG CTG ATG
-----------------------------------------------------------------------------------------
Total sequence length......................... 248414
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 0 1 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 0 1 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
ACT 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 0 1 0 0 0 0 0 0 0 0 0 0
CAG 4 3 0 0 0 0 1 0 0 0 0 0 0
CGA 1 1 0 0 0 0 0 0 0 0 0 0 0
CGG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 1 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 2
1 ATG + 1 TGA + 0 GAT + 1 CAT + 0 ATC + 1 TCA = 4
0 AGT + 0 GTA + 0 TAG + 1 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 1 GCA + 4 CAG + 0 GCT + 0 CTG + 2 TGC = 8
0 ACG + 1 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 1 CGG + 0 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7297460|gb|AE003623.1|AE003623 Drosophila melanogaster genomic scaffold 142000013386055 section 16 of 63, complete sequence
Position Repeat Coverage Repeat
76670 CAT * 7 20/21 CAT CGT CAT CAT CAT CAT CAT
106198 GAT * 11 30/33 GAT GAT AAT GAT GAT GAC GAT GAT GAT GAT TAT
111744 ACA * 7 20/21 ACA ACA ACA ACA ACA ACA AAA
194532 CAG * 8 22/24 CAG CAG CAG CAC CAG CAG CAT CAG
202421 ACA * 7 19/21 ACA ACC ACA ACA ACA ACA ACC
217417 TGA * 7 19/21 TGA AGA TGA TGG TGA TGA TGA
231621 GCA * 7 19/21 GCA GCA GCC ACA GCA GCA GCA
231644 AGC * 7 19/21 AGC AGC AGC AGC AGC CGC TGC
239385 TAT * 8 23/24 TAT TAT TAT TAT TAT TAT TAA TAT
258702 TGA * 7 19/21 TGA TCA TGA TGA TGA CGA TGA
-----------------------------------------------------------------------------------------
Total sequence length......................... 267547
Total number of repeats detected.............. 10
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 2 2 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 2 2 0 0 0 0 0 0 0 0 0 0 0
GAT 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 2 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 2
0 ATG + 2 TGA + 1 GAT + 1 CAT + 0 ATC + 0 TCA = 4
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 1 GCA + 1 CAG + 0 GCT + 0 CTG + 0 TGC = 3
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7297438|gb|AE003622.1|AE003622 Drosophila melanogaster genomic scaffold 142000013386055 section 15 of 63, complete sequence
Position Repeat Coverage Repeat
1315 AAC * 10 27/30 AAC AAC AAC AAC AAC AAC ATG AAC AAC AAA
22149 CAA * 8 22/24 CAA CAA CAA CAA CAT CAA CGA CAA
51356 TGA * 7 19/21 TGA TGA TGA TGG TGA TGG TGA
65080 TTG * 7 19/21 TTG ATG TTG TTG TTG TTG CTG
117086 CAT * 7 20/21 CAT CAT CAT CGT CAT CAT CAT
122178 GAT * 7 19/21 GAT GAT GAT GAT GAT GAT GGC
124596 CAT * 8 22/24 CAT CAT CAT CAT CAT CAT CAG CAG
126387 TCA * 7 19/21 TCA TCA TCA TCA TCG TCA TCG
135911 AGC * 7 19/21 AGC AGC AGC AGG AGC AGG AGC
152335 TCA * 8 22/24 TCA TCA TCA TCA TCA CCA TCA CCA
156829 GCA * 11 30/33 GCA GCA GCA GCA GCA ACA GCA GCA GCA GCA GAG
157906 CAA * 10 27/30 CAA CAA CAA CAA CAA CAT CAA CAA CAA TCA
157961 GCA * 12 33/36 GCA GCG GCG GCA GCA GCA GCA GCA GCA GCG GCA GCA
158194 GCA * 8 22/24 GCA GCA GCA GCA GCA GCA ACA CCA
158350 GCA * 8 22/24 GCA GCA ACA GCA GCA GCA GCA ACA
158556 CTG * 8 22/24 CTG CTG CTG CCG TTG CTG CTG CTG
158699 CAG * 12 33/36 CAG CAG CAG CAG CAG CAA CAG CAG CAG CTG CAG CAC
172156 ACT * 7 19/21 ACT ACT ACT ACC ACA ACT ACT
198683 TGA * 7 19/21 TGA TGA TGA TGG TGA TGA TCA
199982 GAT * 7 19/21 GAT GAT GGT GAT GAT GAT GAA
212750 ATC * 9 25/27 ATC ATC ATC AAC ATC ATC ATC AGC ATC
239179 ACA * 10 27/30 ACA ACA ACA ACA ACA ACA ACA ACA ATG GCA
245929 CAT * 8 22/24 CAT CAT CAT CAT CAT CAT CAT CTG
255387 ATC * 8 22/24 ATC ATC ATT ATC ATC ATC ATC AAC
255557 ACG * 7 19/21 ACG ATG ACG ACG ACG ACG ACA
256856 CCA * 7 20/21 CCA ACA CCA CCA CCA CCA CCA
-----------------------------------------------------------------------------------------
Total sequence length......................... 262244
Total number of repeats detected.............. 26
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 0 1 0 0 0 0 0 0 0 0 0 0
ATC 2 2 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 0 1 0 0 0 0 0 0 0 0 0 0
ACT 1 1 0 0 0 0 0 0 0 0 0 0 0
ACG 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 2 2 0 0 0 0 0 0 0 0 0 0 0
TCA 2 2 0 0 0 0 0 0 0 0 0 0 0
GAT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCA 4 2 2 0 0 0 0 0 0 0 0 0 0
CAA 2 1 1 0 0 0 0 0 0 0 0 0 0
CAT 3 3 0 0 0 0 0 0 0 0 0 0 0
CAG 1 0 1 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 1 ACA + 2 CAA + 0 GTT + 1 TTG + 0 TGT = 5
0 ATG + 2 TGA + 2 GAT + 3 CAT + 2 ATC + 2 TCA = 11
0 AGT + 0 GTA + 0 TAG + 1 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 4 GCA + 1 CAG + 0 GCT + 1 CTG + 0 TGC = 7
1 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 1 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7297389|gb|AE003621.1|AE003621 Drosophila melanogaster genomic scaffold 142000013386055 section 14 of 63, complete sequence
Position Repeat Coverage Repeat
12710 TGG * 9 25/27 TGG TGG TGG TGG TGG TGG TGG TGG CGA
33148 TCC * 10 28/30 TCC TCC TCC TCC TCC TGC TCC TCC TCC GCC
62740 GAA * 7 19/21 GAA AAA GAA GAA GCA GAA GAA
70362 ACA * 7 19/21 ACA ACA ACA ACA AAA ACA ACC
105092 TTG * 9 25/27 TTG CTG CTG TTG TTG TTG TTG TTG TTG
150800 TCA * 7 19/21 TCA TCG TCA TCA TCA TCA TCG
186277 GTT * 7 19/21 GTT GTT GTT GTT CTT GCT GTT
186483 AAC * 8 22/24 AAC AAC CAC AAC AAC AAC AAC AGC
207887 TTC * 10 29/30 TTC TTC TTC TGC TTC TTC TTC TTC TTC TTC
219831 ATT * 7 19/21 ATT ATT ATT ATT GCT ATT ATT
253510 GGT * 8 22/24 GGT GGT GGT GGT GGT GAT GGT GAT
260973 CAG * 7 19/21 CAG AAG CAG CAT CAG CAG CAG
265270 CAT * 7 19/21 CAT CAT CAG CTT CAT CAT CAT
277467 CAG * 10 28/30 CAG GAG CAG CAG CAG CAG CAG CAG CAT CAG
307336 CAG * 10 27/30 CAG CAG CAG CAG CAG CAG TCG CAG CAG CCG
-----------------------------------------------------------------------------------------
Total sequence length......................... 311009
Total number of repeats detected.............. 15
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TTC 1 0 1 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
TCC 1 0 1 0 0 0 0 0 0 0 0 0 0
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 3 1 2 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 1 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 1 GAA + 0 CTT + 1 TTC + 0 TCT = 2
1 AAC + 1 ACA + 0 CAA + 1 GTT + 1 TTG + 0 TGT = 4
0 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 1 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 1 TCC = 1
0 AGC + 0 GCA + 3 CAG + 0 GCT + 0 CTG + 0 TGC = 3
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 1 GGT + 0 GTG + 1 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7297341|gb|AE003620.1|AE003620 Drosophila melanogaster genomic scaffold 142000013386055 section 13 of 63, complete sequence
Position Repeat Coverage Repeat
3043 CAG * 7 20/21 CAG CAG CAG CTG CAG CAG CAG
53378 CGA * 7 19/21 CGA CGA CGA CGA CAA CGA CCA
73740 GCA * 7 19/21 GCA GCA ACA GCA GCA GCA GCT
75255 ACC * 10 27/30 ACC ACC ACC ACG ACC ACC ACC TCC ACC ACT
133887 TCA * 8 22/24 TCA TCA TCA TCA TCA TTA TCA TCG
146033 GTG * 7 19/21 GTG GTT GTG GTG GTG GTG GTT
153127 TCT * 7 19/21 TCT TTT TCT TCT CCT TCT TCT
165913 AAC * 7 19/21 AAC AAC AAC AAC AAA GAC AAC
167706 AAC * 8 22/24 AAC AAT AAC AAT AAC AAC AAC AAC
180266 GTT * 7 21/21 GTT GTT GTT GTT GTT GTT GTT
196455 CAA * 7 19/21 CAA CAA CAA CAG CGA CAA CAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 266748
Total number of repeats detected.............. 11
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 2 2 0 0 0 0 0 0 0 0 0 0 0
ACC 1 0 1 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
TCT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CGA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 1 TCT = 1
2 AAC + 0 ACA + 1 CAA + 1 GTT + 0 TTG + 0 TGT = 4
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 1 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 1 GCA + 1 CAG + 0 GCT + 0 CTG + 0 TGC = 2
0 ACG + 1 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 1
1 ACC + 0 CCA + 0 CAC + 0 GGT + 1 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7297302|gb|AE003619.1|AE003619 Drosophila melanogaster genomic scaffold 142000013386055 section 12 of 63, complete sequence
Position Repeat Coverage Repeat
11359 AGC * 7 19/21 AGC AGC AGC GGT AGC AGC AGC
44903 TGC * 7 19/21 TGC TGC TGC TGC TGC TGC CAC
44959 TGC * 11 31/33 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGT TGT
57116 TCC * 7 19/21 TCC TCC TCC TCA TCC TCC TCA
73147 GCT * 7 19/21 GCT GCT GCT GCT GTC GCT GCT
78679 CTG * 7 19/21 CTG CTG ATG CTG CGG CTG CTG
81380 AGC * 9 25/27 AGC AGC AGC AGC AGC AGC AGC AGA AGA
102391 CGA * 12 33/36 CGA CGA CGA CGA CGA CGA CGA TGA CGA TGA CGA TGA
103024 CTG * 9 25/27 CTG CTG CTC CTT CTG CTG CTG CTG CTG
104010 CTG * 7 19/21 CTG CTG CTG CTG CTG CTT TTG
117916 CAG * 8 22/24 CAG CAG CAA CAG CGG CAG CAG CAG
119664 AGA * 7 19/21 AGA CGA TGA AGA AGA AGA AGA
130590 CAG * 7 19/21 CAG CAG CAG TAG CAG CGG CAG
131427 TGC * 8 23/24 TGC TGC TGC TGC CGC TGC TGC TGC
132351 AGC * 7 19/21 AGC AGC AGC AGC AGC AAC AAC
132498 TTG * 8 22/24 TTG TTG TTG CTG TTA TTG TTG TTG
146039 CAT * 7 20/21 CAT CAT CAT CAT CAT CAT CTT
147132 TTG * 7 19/21 TTG TTG CTG TTG TTG CTG TTG
150415 CAA * 8 23/24 CAA CAA CAA CAA CAG CAA CAA CAA
216596 CTC * 11 31/33 CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CNN
264667 CAA * 8 22/24 CAA CAA CAA CAA CAG CAA CAA CAC
271433 CAA * 7 19/21 CAA CAA CAA CAT CAA CAA CCA
278743 AAT * 7 19/21 AAT TAT AAG AAT AAT AAT AAT
-----------------------------------------------------------------------------------------
Total sequence length......................... 282125
Total number of repeats detected.............. 23
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGA 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 3 3 0 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 3 2 1 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 3 3 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CTG 3 3 0 0 0 0 0 0 0 0 0 0 0
CTC 1 0 1 0 0 0 0 0 0 0 0 0 0
CGA 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 1 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 1
0 AAC + 0 ACA + 3 CAA + 0 GTT + 2 TTG + 0 TGT = 5
0 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 1 TCC = 2
3 AGC + 0 GCA + 2 CAG + 1 GCT + 3 CTG + 3 TGC = 12
0 ACG + 1 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7297264|gb|AE003618.1|AE003618 Drosophila melanogaster genomic scaffold 142000013386055 section 11 of 63, complete sequence
Position Repeat Coverage Repeat
22361 AAC * 11 30/33 AAC AAC AAC AAC ACC AAC AAC AAC AAC AAC AGT
63232 ACC * 8 22/24 ACC ACC ACC ACC AGC ACC ACC ACG
76692 ATG * 7 19/21 ATG ATG ACG ACG ATG ATG ATG
80779 GAT * 7 19/21 GAT GAT GAT AAT GAC GAT GAT
93150 CCT * 7 19/21 CCT CCT CCT CCT GCT CCT CGT
94742 TGT * 7 19/21 TGT TGT TGT AGT TGT TGT TGG
106629 ATG * 8 22/24 ATG ATG ATG ATG AAG ATG ATG AGG
224540 TGC * 7 19/21 TGC TGC AGT TGC TGC TGC TGC
224693 TGC * 7 20/21 TGC TGC TCC TGC TGC TGC TGC
230979 AAG * 7 19/21 AAG AAA AAA AAG AAG AAG AAG
250019 TGT * 7 20/21 TGT TGT TGT TGT TGT TGC TGT
250210 GCT * 7 19/21 GCT GCC GCT GTT GCT GCT GCT
251005 CTG * 7 19/21 CTG CTG CTG CTG CTG CTG TTC
252160 TGT * 10 27/30 TGT TGT TGT TGT TGT TGT TGT GGT TAT TAT
-----------------------------------------------------------------------------------------
Total sequence length......................... 268667
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 1 0 1 0 0 0 0 0 0 0 0 0 0
ATG 2 2 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 3 2 1 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
1 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 1
1 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 3 TGT = 4
2 ATG + 0 TGA + 1 GAT + 0 CAT + 0 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 1 CCT + 0 CTC + 0 TCC = 1
0 AGC + 0 GCA + 0 CAG + 1 GCT + 1 CTG + 2 TGC = 4
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
1 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7297236|gb|AE003617.1|AE003617 Drosophila melanogaster genomic scaffold 142000013386055 section 10 of 63, complete sequence
Position Repeat Coverage Repeat
7263 CCA * 7 19/21 CCA CCA CCA CCA CCA CCA CAC
9327 GCT * 7 19/21 GCT GCT GCT GCT GCT GAT TCT
64109 TGA * 7 19/21 TGA TGA TGA TGA TGA TGA CCA
69505 GCA * 7 20/21 GCA GCA GCA GAA GCA GCA GCA
69536 AGC * 11 30/33 AGC AGC AGC AGC AGC AAC AGC AGC AGC AAC AAC
77731 TGC * 11 30/33 TGC TGC TTC GGC TGC TGC TGC TGC TGC TGC TAC
133211 CAG * 7 19/21 CAG CAC CGG CAG CAG CAG CAG
177549 AAT * 7 19/21 AAT TAA AAT AAT AAT AAT AAT
187915 GCT * 7 20/21 GCT GCT GCT ACT GCT GCT GCT
214125 TTA * 8 22/24 TTA TTG TTT TTA TTA TTA TTA TTA
254695 ATA * 7 19/21 ATA ATA ATA ATA ATA ATA TTT
-----------------------------------------------------------------------------------------
Total sequence length......................... 257296
Total number of repeats detected.............. 11
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 0 1 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 1 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 3
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 1 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 1 GCA + 1 CAG + 2 GCT + 0 CTG + 1 TGC = 6
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 1 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7297210|gb|AE003616.1|AE003616 Drosophila melanogaster genomic scaffold 142000013386055 section 9 of 63, complete sequence
Position Repeat Coverage Repeat
26593 CAG * 7 19/21 CAG CAT CAG CAG CAG CAA CAG
29656 GTT * 7 19/21 GTT GCT GTT GTT GTT GCT GTT
33778 TTA * 8 22/24 TTA TTC ATA TTA TTA TTA TTA TTA
33972 ACA * 8 22/24 ACA ACA ACA ACA ATA ACA GCA ACA
33997 CAA * 8 22/24 CAA TAA CAA CAA CAA CAA CCA CAA
81043 TTG * 7 19/21 TTG TAG TTG TTG TTG TTG TTT
105268 TGC * 7 19/21 TGC TGC TGC AGC TGC CGC TGC
112010 TGA * 7 19/21 TGA TCA TGA TGA TGG TGA TGA
116763 TGC * 7 20/21 TGC TGC TGC TGC TGT TGC TGC
168603 ATT * 11 30/33 ATT GTT GTT ATT ATT ATT ATT ATT ATT ATT GTT
168685 TTA * 8 22/24 TTA TTA TTA TTT ATA TTA TTA TTA
179537 TTG * 7 20/21 TTG TTG TTG TTG TTG TTG TTA
179668 ATG * 7 20/21 ATG ATG ATG ATG GTG ATG ATG
191936 GTT * 8 22/24 GTT GTT GTT GTT GCT GTT GTT GCT
202491 TCC * 9 25/27 TCC TCC TCC TCC TCG TCC ACC TCC TCC
209243 AGT * 7 19/21 AGT AGT AGT AGT AGT AGT TTT
224254 GTT * 7 19/21 GTT GTT GTG GTT GTT GAT GTT
232569 TGC * 7 19/21 TGC TTC TGC TGC TGA TGC TGC
248007 CTG * 7 19/21 CTG GTG CTG CTG ATG CTG CTG
248907 TGC * 7 20/21 TGC TGC TCC TGC TGC TGC TGC
254806 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAT CCG
262265 CAA * 7 21/21 CAA CAA CAA CAA CAA CAA CAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 267518
Total number of repeats detected.............. 22
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATT 1 0 1 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGT 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 2 2 0 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 4 4 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 3 3 0 0 0 0 0 0 0 0 0 0 0
CAA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 1 ATT + 2 TTA + 0 TAT = 3
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 2 CAA + 3 GTT + 2 TTG + 0 TGT = 8
1 ATG + 1 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 2
1 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 1 TCC = 1
0 AGC + 0 GCA + 2 CAG + 0 GCT + 1 CTG + 4 TGC = 7
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7297167|gb|AE003615.1|AE003615 Drosophila melanogaster genomic scaffold 142000013386055 section 8 of 63, complete sequence
Position Repeat Coverage Repeat
14096 TAT * 7 19/21 TAT TAA TAT TAT TAT AAT TAT
37512 CAA * 22 60/66 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAC CAA CAA CAA CGA CAA CAG AAA CAG AAA
40518 TGA * 8 23/24 TGA TGA TGA TGA TGA TGA TGA TGC
65515 GCA * 12 33/36 GCA GGA GCA GCA GCA GCC GCA GCA GCA GCA GCA GCG
65711 CAG * 7 19/21 CAG TAG CAG CAG CAT CAG CAG
72949 GCA * 8 22/24 GCA ACA ACA GCA GCA GCA GCA GCA
75277 CAG * 8 22/24 CAG CAG CAG CAG CAG CAA CAG CAA
81326 CGG * 7 19/21 CGG CGG CGG CGG CAG CGG CAG
81373 GCG * 7 20/21 GCG GCG GCG GCG GCG GCG GGG
109753 CAT * 7 19/21 CAT CAT CGT CAT CAT TAT CAT
149240 CAG * 7 20/21 CAG CAG CAG CAG CAG CAG CAA
160367 CTT * 11 30/33 CTT CTG CTT CTT CTT CTT TTT CTT CTT CTT CTC
163014 CCA * 7 19/21 CCA CCA CCA CCG CCT CCA CCA
165528 ACA * 7 20/21 ACA ACA ACA ACA ACA ACA ACC
189256 TTG * 7 19/21 TTG TTG TTG TTG CCG TTG TTG
267895 CTG * 7 19/21 CTG ATG CTG CTG CTG ATG CTG
267917 TGC * 11 30/33 TGC TGC TGC TGA TGC TGC TGC TGG TGC TGC TGT
268131 GCT * 11 30/33 GCT GCT GCT GCT GTT GCT GCT GAT GCT GAT GCT
269003 GCT * 7 19/21 GCT GCT GCT GTT GCT CCT GCT
-----------------------------------------------------------------------------------------
Total sequence length......................... 269823
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 2 1 1 0 0 0 0 0 0 0 0 0 0
GCT 2 1 1 0 0 0 0 0 0 0 0 0 0
GCG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 0 0 0 0 0 1 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 3 3 0 0 0 0 0 0 0 0 0 0 0
CTT 1 0 1 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CGG 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 1
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 1
0 AAC + 1 ACA + 1 CAA + 0 GTT + 1 TTG + 0 TGT = 3
0 ATG + 1 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 2 GCA + 3 CAG + 2 GCT + 1 CTG + 1 TGC = 9
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 1 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 1 GCG + 1 CGG + 0 GCC + 0 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7297129|gb|AE003614.1|AE003614 Drosophila melanogaster genomic scaffold 142000013386055 section 7 of 63, complete sequence
Position Repeat Coverage Repeat
13157 TCC * 8 22/24 TCC TAC TCC TCC TCC TCC TCC TTC
20922 CAT * 7 19/21 CAT CAT CAT CAC CAT CAC CAT
32882 CTC * 7 19/21 CTC CGC CTC CTA CTC CTC CTC
33004 TGC * 8 22/24 TGC TGC TGC TGC TGT TGT TGC TGC
33052 TGC * 7 19/21 TGC TGT TGC TGC TGC TGC TGT
43425 AGG * 7 19/21 AGG AGG AGG AGG AGG ACG ACG
55658 TGT * 10 28/30 TGT TGT GAT TGT TGT TGT TGT TGT TGT TGT
74955 GCT * 7 21/21 GCT GCT GCT GCT GCT GCT GCT
89980 TTG * 8 22/24 TTG TTG GTG TTG TTG TTG TTC TTG
115767 GCA * 7 19/21 GCA GCA ACA GCA GCA TCA GCA
149174 TGT * 7 19/21 TGT TGT TGT TGT TGC TGG TGT
149348 TGT * 7 19/21 TGT TGC TGC TGT TGT TGT TGT
168402 AAC * 7 19/21 AAC ATG AAC AAC AAC AAC AAC
172294 CAG * 7 19/21 CAG CAG CAG CAA CAG AAG CAG
172601 CAG * 11 30/33 CAG CAG CAG CAG CAG CAG CAC AAG CAG CAG CTG
186874 GGT * 7 19/21 GGT GGT GGT GGA GGT GAT GGT
193854 TTG * 7 19/21 TTG TTG TTG TTG TTG TTA ATG
-----------------------------------------------------------------------------------------
Total sequence length......................... 259440
Total number of repeats detected.............. 17
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGT 3 2 1 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 1 1 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 0 CAA + 0 GTT + 2 TTG + 3 TGT = 6
0 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 1 TCC = 3
0 AGC + 1 GCA + 2 CAG + 1 GCT + 0 CTG + 2 TGC = 6
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 1 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7297088|gb|AE003613.1|AE003613 Drosophila melanogaster genomic scaffold 142000013386055 section 6 of 63, complete sequence
Position Repeat Coverage Repeat
77366 TGC * 7 19/21 TGC TGC TGC TGC TGC TGC AAC
89560 AGG * 7 19/21 AGG AGG AGT AGC AGG AGG AGG
101280 TGC * 8 22/24 TGC AGC TGC TGC TGC TGC TGC TAC
113478 CAG * 7 19/21 CAG CAG CTC CAG CAG CAG CAG
119129 GTT * 7 19/21 GTT GTT ATT GTT GTT GTT GCT
121026 TTG * 8 22/24 TTG CTG TTG TTG TTG TTG TCG TTG
137333 GCT * 7 19/21 GCT GCT GCT GCT GCT GAA GCT
146763 TAT * 7 19/21 TAT TAT TAT TAT TAT TAT ATT
171536 CTG * 8 22/24 CTG CTG CTG CTC CTG CTG CTC CTG
184587 GCA * 7 19/21 GCA GCT GCA GCA GCA GGA GCA
198637 CTG * 7 20/21 CTG CTG TTG CTG CTG CTG CTG
228592 GCT * 8 22/24 GCT GCT GCT GCT GCT GCT GTT GCA
248514 AAC * 7 19/21 AAC AAC AAC AAC AGC AGC AAC
-----------------------------------------------------------------------------------------
Total sequence length......................... 261872
Total number of repeats detected.............. 13
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 0 CAA + 1 GTT + 1 TTG + 0 TGT = 3
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 1
0 AGC + 1 GCA + 1 CAG + 2 GCT + 2 CTG + 2 TGC = 8
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7297037|gb|AE003612.1|AE003612 Drosophila melanogaster genomic scaffold 142000013386055 section 5 of 63, complete sequence
Position Repeat Coverage Repeat
6990 GGT * 7 19/21 GGT GGT GGC GGT GGT GGT GGG
17146 TTG * 7 19/21 TTG TTG CTG CTG TTG TTG TTG
17191 TGT * 7 19/21 TGT TGT TGT TGT TGT GGT TGA
20952 CCA * 8 22/24 CCA CCA CCA CCA CCA CCA CTA CAA
26923 CAT * 7 19/21 CAT CAT CAT CTT CAC CAT CAT
35433 TCG * 8 22/24 TCG TCC TCG TCG TCA TCG TCG TCG
50909 TAA * 8 23/24 TAA TAA TAA TAA TAA TAA TCA TAA
53569 GCT * 8 22/24 GCT GTT GCT GCT GCT GCT GCT GCG
57475 GGC * 7 19/21 GGC AGC GGC GGC GGC GGC GGG
57660 GAT * 7 19/21 GAT GGT GCT GAT GAT GAT GAT
57681 GCT * 7 19/21 GCT GCT GGT GCT GCT GCT TCT
136875 CAG * 8 22/24 CAG CAC CAG CAG GAG CAG CAG CAG
182743 TCA * 8 22/24 TCA TCA TCG TCA TCA TCA TCA GCA
182768 CAT * 7 20/21 CAT CAT CAT CAT CAT CAT CAG
219543 CTG * 7 20/21 CTG CTG CTG CTG CTG CTG TTG
235196 GTT * 8 22/24 GTT GTT GTT CCT GTT GTT GTT GTT
243455 AGG * 10 29/30 AGG AGG AGG AGG AGG AGG AGG AGG AGT AGG
251848 GCC * 7 19/21 GCC GCC GCC GCC GCC GCA GCG
-----------------------------------------------------------------------------------------
Total sequence length......................... 260550
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGG 1 0 1 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 1 GTT + 1 TTG + 1 TGT = 3
0 ATG + 0 TGA + 1 GAT + 2 CAT + 0 ATC + 1 TCA = 4
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 1
0 AGC + 0 GCA + 1 CAG + 2 GCT + 1 CTG + 0 TGC = 4
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 1 TCG = 1
0 ACC + 1 CCA + 0 CAC + 1 GGT + 0 GTG + 0 TGG = 2
1 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7297008|gb|AE003611.1|AE003611 Drosophila melanogaster genomic scaffold 142000013386055 section 4 of 63, complete sequence
Position Repeat Coverage Repeat
5658 GCA * 13 36/39 GCA GCA GCA GCA GCA GAA GCA GCA GCA GTA GCA GCA GCC
28800 ATT * 9 25/27 ATT ATT ATT ATT ATT ATT ATT ATT TTC
107280 GCA * 7 19/21 GCA GCA GCA GCC ACA GCA GCA
107595 GCA * 9 25/27 GCA GCA GCA GCA GCA ACA ACA GCA GCA
155111 CAG * 7 19/21 CAG CAT CAG CAG CCG CAG CAG
155198 CAC * 7 19/21 CAC CAC CAC CAC CAG CAT CAC
155267 GGT * 7 19/21 GGT GGT GGT GGT GGG GGC GGT
206607 CCG * 7 20/21 CCG TCG CCG CCG CCG CCG CCG
236654 ATA * 10 27/30 ATA ATA ATA ATA ATA ATA ATA ATA AAC ATT
239753 CAT * 7 19/21 CAT CAT CAT CAT CAT CAT GCT
240661 CAA * 7 19/21 CAA CAA TAA CAA TAA CAA CAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 259961
Total number of repeats detected.............. 11
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 1 0 1 0 0 0 0 0 0 0 0 0 0
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 3 2 0 1 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 1 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 1 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 3 GCA + 1 CAG + 0 GCT + 0 CTG + 0 TGC = 4
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 1 CAC + 1 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 1 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7296978|gb|AE003610.1|AE003610 Drosophila melanogaster genomic scaffold 142000013386055 section 3 of 63, complete sequence
Position Repeat Coverage Repeat
14779 CAT * 9 25/27 CAT CAT CAT CAT CAT CAT CAT CTT CGT
25182 ACA * 10 28/30 ACA ATA ACA ACA ATA ACA ACA ACA ACA ACA
43725 CTG * 7 20/21 CTG CTG CCG CTG CTG CTG CTG
51357 TGC * 12 34/36 TGC TGC TGT TGC TGT TGC TGC TGC TGC TGC TGC TGC
61622 CAG * 7 19/21 CAG CAG CAG CAA CAT CAG CAG
61903 GCA * 7 19/21 GCA ACA GCA GCA GCA GCA ACA
73012 GCA * 9 25/27 GCA GCA GCA CCA GCA GCA GCA GCA ACA
73485 AGC * 7 19/21 AGC AAC AGC AGC TGC AGC AGC
86309 CAA * 7 19/21 CAA CAA CAA TAA TAA CAA CAA
107583 AAC * 7 19/21 AAC AGC AAC AAC AAC AAC AGC
158899 AGC * 7 20/21 AGC AGC AGC AGC AGC AGC GGC
182259 CTC * 7 19/21 CTC CTC CTT CTC CGC CTC CTC
192950 TGC * 8 22/24 TGC TGC TGC TGG TGG TGC TGC TGC
193004 GAG * 9 25/27 GAG GAG GAG GAG GAG GAG GAG GAG TGG
-----------------------------------------------------------------------------------------
Total sequence length......................... 256628
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 2 0 0 0 0 0 0 0 0 0 0 0
ACA 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 2 1 1 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 1 ACA + 1 CAA + 0 GTT + 0 TTG + 0 TGT = 3
0 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 0 CCT + 1 CTC + 0 TCC = 2
2 AGC + 2 GCA + 1 CAG + 0 GCT + 1 CTG + 2 TGC = 8
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7296952|gb|AE003609.1|AE003609 Drosophila melanogaster genomic scaffold 142000013386055 section 2 of 63, complete sequence
Position Repeat Coverage Repeat
1370 GAC * 8 22/24 GAC GAT GAT GAC GAC GAC GAC GAC
2041 AGC * 10 27/30 AGC AGA AGC AGC AAC AGC AGC AGC AGC AGA
13469 CAG * 7 19/21 CAG CAG CAG TAG GAG CAG CAG
13893 TCG * 7 19/21 TCG TCG TTG TGG TCG TCG TCG
49797 TTA * 8 22/24 TTA TTA TTA TTA TTA TTA TAA CTA
52711 ACA * 8 22/24 ACA ACA AGA GCA ACA ACA ACA ACA
53152 GAA * 7 19/21 GAA GAA AAA GAA GAA GAA GAG
54014 TGT * 7 20/21 TGT AGT TGT TGT TGT TGT TGT
54986 GCT * 8 22/24 GCT GAT GCT GCT GCT GCT GCT GGT
70510 CAG * 7 20/21 CAG CAG CAG CAG CAA CAG CAG
74424 AGC * 7 20/21 AGC AGC AGC AGC AGC AGC AGA
78911 AGC * 12 33/36 AGC AGC AAC AGC AGC AGC AGC AGC AGC AGC GGC AGT
89056 GCT * 7 19/21 GCT GCT GTT GCT GCT GCT GGT
97409 CAG * 8 22/24 CAG CAA CAA CAG CAG CAG CAG CAG
97875 ACA * 7 19/21 ACA ACA ACA ACA ATA ACA CCA
105407 CAA * 7 19/21 CAA CAA CAA CAA CAA CAT CAT
112156 AAG * 7 19/21 AAG AAG AAG AAG AAG AAA AAC
119950 CGA * 7 19/21 CGA CGT CGA CGT CGA CGA CGA
125119 CAG * 7 19/21 CAG CCG CAT CAG CAG CAG CAG
125154 GCA * 7 19/21 GCA GCA ACA ACA GCA GCA GCA
126818 TAT * 7 21/21 TAT TAT TAT TAT TAT TAT TAT
134032 GCT * 7 19/21 GCT GTT GCT GCT GCT GCT GAT
136037 CTG * 7 19/21 CTG CTG CTG CTG CTG CTG CAC
136597 GCT * 7 19/21 GCT GCT GTT GCT GCT GCT GTT
136620 TGC * 7 19/21 TGC TGC TGC TGT TGC TGC TGT
136821 TTG * 7 19/21 TTG TTG TTA TTG TTG CTG TTG
137391 TGT * 7 19/21 TGT TGC TGT TGT TGC TGT TGT
137588 CTG * 7 19/21 CTG TTG CTG CTG CTG CTG TTG
137609 TTG * 9 25/27 TTG TTG CTG CTG TTG TTG TTG TTG TTG
138453 TGC * 8 23/24 TGC TGC TGC TGC TGC TGT TGC TGC
138653 TTG * 7 19/21 TTG TTG CTG TTG TTG TTG CTG
139018 GCT * 8 22/24 GCT GCT GCT GCT GCT GTT GCG GCT
139295 CTG * 7 19/21 CTG CGG CTG CTG CTG CTG TTG
139453 GCT * 7 19/21 GCT GCT GCT GCT GCT GTT GCG
140747 CTG * 11 31/33 CTG CTG CTG CTG CTG TTG TTG CTG CTG CTG CTG
148793 CTC * 13 36/39 CTC CTC CTC CTC CTC CTC CTC CTC CTT CTC CTG CGC CTC
152041 TTA * 7 19/21 TTA TTA TTA TTA TTA TTA CTT
204323 GCA * 7 19/21 GCA GGA GGA GCA GCA GCA GCA
220968 CGG * 7 19/21 CGG CAG CGG CGG CGG CAG CGG
223087 CAG * 7 19/21 CAG CAA CAA CAG CAG CAG CAG
230850 GCA * 8 22/24 GCA GCA GCA GCA ACA ACA GCA GCA
236575 CAG * 7 19/21 CAG CAA CAG CAG CAG AAG CAG
238562 TGC * 7 19/21 TGC TGG TGC TGC TGC TGC TGT
238714 CTG * 7 20/21 CTG TTG CTG CTG CTG CTG CTG
-----------------------------------------------------------------------------------------
Total sequence length......................... 254808
Total number of repeats detected.............. 44
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 3 1 2 0 0 0 0 0 0 0 0 0 0
ACA 2 2 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 2 2 0 0 0 0 0 0 0 0 0 0 0
TTG 3 3 0 0 0 0 0 0 0 0 0 0 0
TGT 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 3 3 0 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 3 3 0 0 0 0 0 0 0 0 0 0 0
GCT 6 6 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 6 6 0 0 0 0 0 0 0 0 0 0 0
CTG 5 4 1 0 0 0 0 0 0 0 0 0 0
CTC 1 0 0 1 0 0 0 0 0 0 0 0 0
CGA 1 1 0 0 0 0 0 0 0 0 0 0 0
CGG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 2 TTA + 1 TAT = 3
1 AAG + 0 AGA + 1 GAA + 0 CTT + 0 TTC + 0 TCT = 2
0 AAC + 2 ACA + 1 CAA + 0 GTT + 3 TTG + 2 TGT = 8
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 1
3 AGC + 3 GCA + 6 CAG + 6 GCT + 5 CTG + 3 TGC = 26
0 ACG + 1 CGA + 1 GAC + 0 CGT + 0 GTC + 1 TCG = 3
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 1 CGG + 0 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7296901|gb|AE003608.1|AE003608 Drosophila melanogaster genomic scaffold 142000013386055 section 1 of 63, complete sequence
Position Repeat Coverage Repeat
30126 TCC * 7 19/21 TCC TCC TCC GTC TCC TCC TCC
63412 AAC * 7 19/21 AAC AAC AAC AGC AAC AGC AAC
110006 ATT * 7 19/21 ATT ATT ATT ATT ATT ATT TAT
145008 CAT * 9 25/27 CAT TAT CAT CAT CAT CAT CAT TAT CAT
149560 CAG * 7 19/21 CAG CAG CAG CAG CAG CAG CTC
181181 TAT * 7 19/21 TAT TAT TAA TAT TAT TAT TTT
239701 AAC * 7 19/21 AAC CAC AAC AAC AAC AAC TAC
-----------------------------------------------------------------------------------------
Total sequence length......................... 241429
Total number of repeats detected.............. 7
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 2 2 0 0 0 0 0 0 0 0 0 0 0
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 1 ATT + 0 TTA + 1 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
2 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 2
0 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 1 TCC = 1
0 AGC + 0 GCA + 1 CAG + 0 GCT + 0 CTG + 0 TGC = 1
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7289481|gb|AE002744.1|AE002744 Drosophila melanogaster genomic scaffold 142000013385704, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 12466
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289774|gb|AE002717.1|AE002717 Drosophila melanogaster genomic scaffold 142000013385965, complete sequence
Position Repeat Coverage Repeat
20261 GCA * 7 19/21 GCA GCA GCA GCA GCA GCA GTG
24107 TTG * 7 19/21 TTG TTG CTG CTG TTG TTG TTG
24141 TGT * 7 19/21 TGT TGT TGT CGT TGT TCT TGT
-----------------------------------------------------------------------------------------
Total sequence length......................... 49759
Total number of repeats detected.............. 3
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 1 TTG + 1 TGT = 2
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 1 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 1
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7289076|gb|AE002718.1|AE002718 Drosophila melanogaster genomic scaffold 142000013385365, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 17155
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289643|gb|AE002735.1|AE002735 Drosophila melanogaster genomic scaffold 142000013385844, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1207
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7316091|gb|AE002725.1|AE002725 Drosophila melanogaster genomic scaffold 142000013386030, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7302154|gb|AE003783.1|AE003783 Drosophila melanogaster genomic scaffold 142000013386030 section 3 of 3, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 96018
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7302138|gb|AE003782.1|AE003782 Drosophila melanogaster genomic scaffold 142000013386030 section 2 of 3, complete sequence
Position Repeat Coverage Repeat
3632 CAT * 7 20/21 CAT CAT CAT CAT CAT CAG CAT
9580 ACC * 7 19/21 ACC ACC ACC GCC ACC ACC ACA
19408 TAT * 11 30/33 TAT TAT TAT TAT TAT TAT TAT TAT TAT TTT AAG
88439 GCA * 7 19/21 GCA GCA GCA ACA TCA GCA GCA
88461 CAG * 7 19/21 CAG CAT CAG CAT CAG CAG CAG
88547 TCA * 7 19/21 TCA TCA TCG TCA TCA TCA GCA
101233 CTT * 7 20/21 CTT CTT CTT CTT CTT CTT CCT
106895 TGA * 8 22/24 TGA TGA TGA TGG TGA TGA CGA TGA
169488 ATA * 8 23/24 ATA ATA ATA ATA ATA ATA ATA TTA
-----------------------------------------------------------------------------------------
Total sequence length......................... 298276
Total number of repeats detected.............. 9
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 0 1 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 2
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 1
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 1 TGA + 0 GAT + 1 CAT + 0 ATC + 1 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 1 GCA + 1 CAG + 0 GCT + 0 CTG + 0 TGC = 2
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
1 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7302115|gb|AE003781.1|AE003781 Drosophila melanogaster genomic scaffold 142000013386030 section 1 of 3, complete sequence
Position Repeat Coverage Repeat
11743 TGC * 7 19/21 TGC TGC TGC TGT TGC TGC TGT
11781 CTG * 10 27/30 CTG CTG TTG CTG CTT CTG CTG CTG CTG TTG
41067 AGC * 7 19/21 AGC AGC AAC AAC AGC AGC AGC
41123 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CAA
83479 TAA * 7 20/21 TAA GAA TAA TAA TAA TAA TAA
115498 AAT * 7 19/21 AAT AAT CAT AAT AAT AAT ATT
159030 ATT * 8 22/24 ATT ATT ATT ATT ATT ACT AGT ATT
291963 TCT * 8 22/24 TCT TCT GCT TCT TCT TCA TCT TCT
-----------------------------------------------------------------------------------------
Total sequence length......................... 311786
Total number of repeats detected.............. 8
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 1 TAA + 1 ATT + 0 TTA + 0 TAT = 3
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 1 TCT = 1
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 0 GCA + 1 CAG + 0 GCT + 1 CTG + 1 TGC = 4
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7289058|gb|AE002603.1|AE002603 Drosophila melanogaster genomic scaffold 142000013385350, complete sequence
Position Repeat Coverage Repeat
57717 AAT * 8 22/24 AAT AAT AAT AAT AAT AAT ACT CAT
-----------------------------------------------------------------------------------------
Total sequence length......................... 72803
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 0
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7288919|gb|AE002657.1|AE002657 Drosophila melanogaster genomic scaffold 142000013385232, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 3148
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289298|gb|AE002805.1|AE002805 Drosophila melanogaster genomic scaffold 142000013385551, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 12120
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289809|gb|AE002830.1|AE002830 Drosophila melanogaster genomic scaffold 142000013385997, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 4094
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289333|gb|AE002838.1|AE002838 Drosophila melanogaster genomic scaffold 142000013385578, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 3071
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289467|gb|AE002846.1|AE002846 Drosophila melanogaster genomic scaffold 142000013385691, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 2237
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289324|gb|AE002854.1|AE002854 Drosophila melanogaster genomic scaffold 142000013385570, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 15436
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289811|gb|AE003055.1|AE003055 Drosophila melanogaster genomic scaffold 142000013385999, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 2626
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289409|gb|AE002734.1|AE002734 Drosophila melanogaster genomic scaffold 142000013385644, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 31062
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289362|gb|AE002743.1|AE002743 Drosophila melanogaster genomic scaffold 142000013385604, complete sequence
Position Repeat Coverage Repeat
57534 AAT * 7 20/21 AAT AAT AAT TAT AAT AAT AAT
-----------------------------------------------------------------------------------------
Total sequence length......................... 83461
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 0
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7289584|gb|AE002927.1|AE002927 Drosophila melanogaster genomic scaffold 142000013385793, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 28019
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289577|gb|AE003312.1|AE003312 Drosophila melanogaster genomic scaffold 142000013385786, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1385
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289490|gb|AE002910.1|AE002910 Drosophila melanogaster genomic scaffold 142000013385713, complete sequence
Position Repeat Coverage Repeat
17486 AAG * 7 19/21 AAG AAG AAG AAG AAG TGG AAG
-----------------------------------------------------------------------------------------
Total sequence length......................... 67870
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
1 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 1
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 0
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7289873|gb|AE002918.1|AE002918 Drosophila melanogaster genomic scaffold 142000013386041, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 181393
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289120|gb|AE002745.1|AE002745 Drosophila melanogaster genomic scaffold 142000013385404, complete sequence
Position Repeat Coverage Repeat
837 ATA *110 298/330 ATA ATA ATA ATA ATC ATA ATG ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA GTA ATA ATA ATA ATA ATG ATA ATA ATA GTA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATG GTT AAT AAT AAT AAT AAT ATG TAT CAT AAT AAT AAG ACA
5646 ATA *111 301/333 ATA ATA ATA ATA ATC ATA ATG ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATG TTA ATA ATA ATA ATA ATA TGT ATC ATA ATA ATA AGA CAA CCA ATG AGT AAA CTT AAG AGC ACC CTA GAT CCT
-----------------------------------------------------------------------------------------
Total sequence length......................... 10548
Total number of repeats detected.............. 2
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 2 0 0 0 0 0 0 0 0 0 0 0 2
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 2 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 0
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7289373|gb|AE002862.1|AE002862 Drosophila melanogaster genomic scaffold 142000013385610, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1311
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7288961|gb|AE002870.1|AE002870 Drosophila melanogaster genomic scaffold 142000013385272, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 15414
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289796|gb|AE002878.1|AE002878 Drosophila melanogaster genomic scaffold 142000013385984, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 6536
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289312|gb|AE002886.1|AE002886 Drosophila melanogaster genomic scaffold 142000013385559, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1135
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7288989|gb|AE002894.1|AE002894 Drosophila melanogaster genomic scaffold 142000013385295, complete sequence
Position Repeat Coverage Repeat
383 GAG * 7 20/21 GAG GAG GAG GAG GAG GAG AAG
-----------------------------------------------------------------------------------------
Total sequence length......................... 10783
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 1
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 0
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7289308|gb|AE002902.1|AE002902 Drosophila melanogaster genomic scaffold 142000013385556, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 23301
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
-----------------------------------------------------------------------------------------
Tri-nucleotide repeats in Drosophila melanogaster Chromosome-Arm-2L Genomic Scaffolds
Minimum tri-nucleotide repeating units = 7 (allowing maximum of 10% mismatch)
Total 110 sequences searched with a total of 22577126 bp length
Total 1407 repeats covering 32221 / 35145 base pairs
Length distribution of all tri-nucleotide repeats
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
no. of repeat-units 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 >=40
total repeats 764 317 57 101 75 44 8 25 3 1 1 3 0 1 1 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Length distribution of all tri-nucleotide repeats
No. of repeat units> 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
total repeats--> 1138 220 36 5 2 2 1 0 0 0 1 2
AAT 19 5 3 0 0 0 0 0 0 0 0 0
AAG 6 0 0 0 0 0 0 0 0 0 0 0
AAC 25 6 0 0 0 0 0 0 0 0 0 0
ATA 17 1 1 1 0 0 0 0 0 0 0 2
ATT 17 2 0 0 0 0 0 0 0 0 0 0
ATG 17 1 1 0 0 0 0 0 0 0 0 0
ATC 13 1 1 0 0 0 0 0 0 0 0 0
AGA 4 0 0 0 0 0 0 0 0 0 0 0
AGT 4 1 0 0 0 0 0 0 0 0 1 0
AGG 10 4 1 0 0 0 0 0 0 0 0 0
AGC 36 14 3 0 0 0 0 0 0 0 0 0
ACA 23 4 0 0 0 0 0 0 0 0 0 0
ACT 3 0 0 0 0 0 0 0 0 0 0 0
ACG 4 0 0 0 0 0 0 0 0 0 0 0
ACC 8 3 0 0 0 0 0 0 0 0 0 0
TAA 11 0 0 1 0 0 0 0 0 0 0 0
TAT 20 2 0 0 0 0 1 0 0 0 0 0
TAG 1 1 0 0 0 0 0 0 0 0 0 0
TAC 4 1 0 0 0 0 0 0 0 0 0 0
TTA 14 3 0 0 0 0 0 0 0 0 0 0
TTG 49 3 1 0 0 0 0 0 0 0 0 0
TTC 2 1 0 0 0 0 0 0 0 0 0 0
TGA 33 5 1 0 0 0 0 0 0 0 0 0
TGT 32 10 0 0 0 0 0 0 0 0 0 0
TGG 6 2 0 0 0 0 0 0 0 0 0 0
TGC 104 28 5 1 0 0 0 0 0 0 0 0
TCA 21 1 0 0 0 0 0 0 0 0 0 0
TCT 4 0 0 0 0 0 0 0 0 0 0 0
TCG 9 2 0 0 0 0 0 0 0 0 0 0
TCC 13 3 0 0 0 0 0 0 0 0 0 0
GAA 3 0 0 0 0 0 0 0 0 0 0 0
GAT 35 4 1 0 0 0 0 0 0 0 0 0
GAG 8 2 0 0 0 0 0 0 0 0 0 0
GAC 9 1 0 0 0 0 0 0 0 0 0 0
GTA 0 1 0 0 0 0 0 0 0 0 0 0
GTT 26 3 0 0 0 0 0 0 0 0 0 0
GTG 7 1 0 0 0 0 0 0 0 0 0 0
GTC 3 1 0 0 0 0 0 0 0 0 0 0
GGA 8 1 0 0 0 0 0 0 0 0 0 0
GGT 9 0 1 0 0 0 0 0 0 0 0 0
GGC 3 0 0 0 0 0 0 0 0 0 0 0
GCA 84 20 3 1 2 0 0 0 0 0 0 0
GCT 63 13 1 1 0 0 0 0 0 0 0 0
GCG 3 0 0 0 0 0 0 0 0 0 0 0
GCC 11 0 0 0 0 0 0 0 0 0 0 0
CAA 40 7 1 0 0 1 0 0 0 0 0 0
CAT 45 5 2 0 0 0 0 0 0 0 0 0
CAG 111 29 5 0 0 1 0 0 0 0 0 0
CAC 8 3 0 0 0 0 0 0 0 0 0 0
CTA 3 0 0 0 0 0 0 0 0 0 0 0
CTT 8 1 0 0 0 0 0 0 0 0 0 0
CTG 62 15 4 0 0 0 0 0 0 0 0 0
CTC 12 1 1 0 0 0 0 0 0 0 0 0
CGA 8 2 0 0 0 0 0 0 0 0 0 0
CGT 4 1 0 0 0 0 0 0 0 0 0 0
CGG 5 0 0 0 0 0 0 0 0 0 0 0
CGC 4 0 0 0 0 0 0 0 0 0 0 0
CCA 12 2 0 0 0 0 0 0 0 0 0 0
CCT 8 3 0 0 0 0 0 0 0 0 0 0
CCG 7 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------------------------------------
-----------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes in all sequences
27 AAT + 22 ATA + 12 TAA + 19 ATT + 17 TTA + 23 TAT = 120
6 AAG + 4 AGA + 3 GAA + 9 CTT + 3 TTC + 4 TCT = 29
31 AAC + 27 ACA + 49 CAA + 29 GTT + 53 TTG + 42 TGT = 231
19 ATG + 39 TGA + 40 GAT + 52 CAT + 15 ATC + 22 TCA = 187
6 AGT + 1 GTA + 2 TAG + 3 ACT + 3 CTA + 5 TAC = 20
15 AGG + 9 GGA + 10 GAG + 11 CCT + 14 CTC + 16 TCC = 75
53 AGC + 110 GCA + 146 CAG + 78 GCT + 81 CTG + 138 TGC = 606
4 ACG + 10 CGA + 10 GAC + 5 CGT + 4 GTC + 11 TCG = 44
11 ACC + 14 CCA + 11 CAC + 10 GGT + 8 GTG + 8 TGG = 62
3 GGC + 3 GCG + 5 CGG + 11 GCC + 7 CCG + 4 CGC = 33
-----------------------------------------------------------------------------------------
Frequency distribution of repeats longer than 40 bp
3 AAT + 4 ATA + 1 TAA + 0 ATT + 0 TTA + 1 TAT = 9
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 2 CAA + 0 GTT + 1 TTG + 0 TGT = 3
1 ATG + 0 TGA + 1 GAT + 1 CAT + 1 ATC + 0 TCA = 4
1 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 1
1 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 1
2 AGC + 3 GCA + 6 CAG + 2 GCT + 3 CTG + 6 TGC = 22
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 1 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Total repeats longer than 40 bp = 41
-----------------------------------------------------------------------------------------
Sequence-wise distribution of tri-nucleotide repeats
-----------------------------------------------------------------------------------------
Sequence Sequence-length Total-repeats
gi|7316101|gb|AE0026 0 0
gi|7296218|gb|AE0035 301627 7
gi|7296179|gb|AE0035 302473 24
gi|7296139|gb|AE0035 299378 22
gi|7296095|gb|AE0035 309388 26
gi|7296066|gb|AE0035 306352 17
gi|7296031|gb|AE0035 306573 22
gi|7295986|gb|AE0035 324484 29
gi|7295946|gb|AE0035 303356 27
gi|7295900|gb|AE0035 295312 12
gi|7295843|gb|AE0035 306436 32
gi|7295809|gb|AE0035 295223 15
gi|7295765|gb|AE0035 304383 23
gi|7295742|gb|AE0035 307748 17
gi|7295725|gb|AE0035 267576 19
gi|7295692|gb|AE0035 304634 12
gi|7295650|gb|AE0035 327242 30
gi|7316108|gb|AE0026 0 0
gi|7298777|gb|AE0036 117404 1
gi|7298740|gb|AE0036 272526 9
gi|7298706|gb|AE0036 267300 14
gi|7298684|gb|AE0036 263704 22
gi|7298667|gb|AE0036 247952 9
gi|7298648|gb|AE0036 205045 6
gi|7298621|gb|AE0036 266340 13
gi|7298582|gb|AE0036 299476 17
gi|7298553|gb|AE0036 263214 11
gi|7298501|gb|AE0036 265023 18
gi|7298465|gb|AE0036 231972 23
gi|7298444|gb|AE0036 260897 19
gi|7298430|gb|AE0036 270233 14
gi|7298413|gb|AE0036 256054 9
gi|7298410|gb|AE0036 251154 1
gi|7298378|gb|AE0036 254383 15
gi|7298369|gb|AE0036 261000 9
gi|7298355|gb|AE0036 249742 12
gi|7298316|gb|AE0036 258166 17
gi|7298303|gb|AE0036 254674 33
gi|7298270|gb|AE0036 264581 16
gi|7298255|gb|AE0036 275242 6
gi|7298233|gb|AE0036 240520 10
gi|7298216|gb|AE0036 262205 15
gi|7298191|gb|AE0036 266295 14
gi|7298171|gb|AE0036 261527 10
gi|7298162|gb|AE0036 264851 23
gi|7298143|gb|AE0036 240197 16
gi|7298121|gb|AE0036 272070 29
gi|7298081|gb|AE0036 299556 14
gi|7298054|gb|AE0036 267510 20
gi|7298000|gb|AE0036 261590 26
gi|7297983|gb|AE0036 253648 24
gi|7297962|gb|AE0036 224205 8
gi|7297938|gb|AE0036 245782 26
gi|7297915|gb|AE0036 307911 22
gi|7297877|gb|AE0036 264752 18
gi|7297859|gb|AE0036 266057 10
gi|7297846|gb|AE0036 244279 16
gi|7297810|gb|AE0036 261329 31
gi|7297758|gb|AE0036 276576 36
gi|7297715|gb|AE0036 260791 8
gi|7297628|gb|AE0036 270055 3
gi|7297589|gb|AE0036 260794 26
gi|7297545|gb|AE0036 265236 22
gi|7297520|gb|AE0036 260624 33
gi|7297497|gb|AE0036 248414 18
gi|7297460|gb|AE0036 267547 10
gi|7297438|gb|AE0036 262244 26
gi|7297389|gb|AE0036 311009 15
gi|7297341|gb|AE0036 266748 11
gi|7297302|gb|AE0036 282125 23
gi|7297264|gb|AE0036 268667 14
gi|7297236|gb|AE0036 257296 11
gi|7297210|gb|AE0036 267518 22
gi|7297167|gb|AE0036 269823 19
gi|7297129|gb|AE0036 259440 17
gi|7297088|gb|AE0036 261872 13
gi|7297037|gb|AE0036 260550 18
gi|7297008|gb|AE0036 259961 11
gi|7296978|gb|AE0036 256628 14
gi|7296952|gb|AE0036 254808 44
gi|7296901|gb|AE0036 241429 7
gi|7289481|gb|AE0027 12466 0
gi|7289774|gb|AE0027 49759 3
gi|7289076|gb|AE0027 17155 0
gi|7289643|gb|AE0027 1207 0
gi|7316091|gb|AE0027 0 0
gi|7302154|gb|AE0037 96018 0
gi|7302138|gb|AE0037 298276 9
gi|7302115|gb|AE0037 311786 8
gi|7289058|gb|AE0026 72803 1
gi|7288919|gb|AE0026 3148 0
gi|7289298|gb|AE0028 12120 0
gi|7289809|gb|AE0028 4094 0
gi|7289333|gb|AE0028 3071 0
gi|7289467|gb|AE0028 2237 0
gi|7289324|gb|AE0028 15436 0
gi|7289811|gb|AE0030 2626 0
gi|7289409|gb|AE0027 31062 0
gi|7289362|gb|AE0027 83461 1
gi|7289584|gb|AE0029 28019 0
gi|7289577|gb|AE0033 1385 0
gi|7289490|gb|AE0029 67870 1
gi|7289873|gb|AE0029 181393 0
gi|7289120|gb|AE0027 10548 2
gi|7289373|gb|AE0028 1311 0
gi|7288961|gb|AE0028 15414 0
gi|7289796|gb|AE0028 6536 0
gi|7289312|gb|AE0028 1135 0
gi|7288989|gb|AE0028 10783 1
gi|7289308|gb|AE0029 23301 0
-----------------------------------------------------------------------------------------
© Division of Biochemical Sciences, National Chemical Laboratory, Pune 411008, INDIA