Tri-Nucleotide Repeats in Genomic Sequences
Tri-Nucleotide Repeats in
Drosophila melanogaster Chromosome-Arm-2L Genomic Scaffolds
Genomic sequence
gi|7316101|gb|AE002638.1|AE002638 Drosophila melanogaster genomic scaffold 142000013386046, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7296218|gb|AE003590.1|AE003590 Drosophila melanogaster genomic scaffold 142000013386046 section 16 of 16, complete sequence
Position Repeat Coverage Repeat
65043 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CAA
79070 ACC * 7 19/21 ACC AAT ACC ACC ACC ACC ACC
91517 CAG * 8 22/24 CAG CAA CAA CAG CAG CAG CAG CAG
109078 CTG * 7 19/21 CTG CTG CTG TTG TTG CTG CTG
143721 ATT * 8 22/24 ATT ATT ATT ATT ATT GTT GTT ATT
143785 TGT * 8 23/24 TGT TGT TGC TGT TGT TGT TGT TGT
163127 CTC * 7 19/21 CTC CTC GTC CTC CTC CTC ATC
-----------------------------------------------------------------------------------------
Total sequence length......................... 301627
Total number of repeats detected.............. 7
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 1 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 1 TGT = 1
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 1
0 AGC + 0 GCA + 2 CAG + 0 GCT + 1 CTG + 0 TGC = 3
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
1 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7296179|gb|AE003589.1|AE003589 Drosophila melanogaster genomic scaffold 142000013386046 section 15 of 16, complete sequence
Position Repeat Coverage Repeat
5616 GCA * 7 20/21 GCA GCA GCA GCA GCA GCA ACA
6666 TGC * 7 20/21 TGC TGC TGC TGT TGC TGC TGC
11882 CTG * 9 25/27 CTG GTT CTG CTG CTG CTG CTG CTG CTG
33088 TGC * 12 33/36 TGC TGC TCC TGC TGG TGC TGC TGC TGC TGC TGC TGG
62828 CAC * 12 33/36 CAC CAC CAC TAC CAC CAC CAC CAC CAG CAC CAC CAG
68599 AAG * 7 19/21 AAG AAG GAG AAG AAG GAG AAG
80588 GCA * 11 30/33 GCA GCA ACA GCA GCT GCA GCA GCA GCA GCA ACA
83122 TCA * 8 23/24 TCA TCA TCA TCA TCA TCA TCA TCT
99926 CGC * 7 19/21 CGC CGT CGC CGC CGC CGT CGC
118699 TTG * 8 22/24 TTG CTG TTG TTG TTG TTG TTG TGG
118954 CAA * 8 22/24 CAA CAA CAA CAA CAA CAA AAA CTA
132178 CGG * 7 19/21 CGG CAG CGG CGT CGG CGG CGG
138514 CTG * 8 22/24 CTG CTG TTG TTG CTG CTG CTG CTG
147252 CAG * 8 22/24 CAG CAA CAG CAG CAG CAG CAG CAA
154056 CTG * 9 25/27 CTG CTG CTG CTG TTG CTG CTG CTG TTG
154111 TGC * 7 19/21 TGC TGC TGT TGC TGC TGC TGA
164685 TGC * 9 25/27 TGC TGC TGC TGC TGC TGC TGT TGC TTC
166648 GGT * 7 20/21 GGT GGT GGT GGT GCT GGT GGT
170537 AGG * 7 19/21 AGG AGA AGG AGG AGG AGG TGG
173008 CTG * 12 33/36 CTG CCG CTG CTG CTG CTG CTG CTT CTG CTG CTG ATG
188281 CTG * 7 19/21 CTG CTG CTG CTG GTG CTG CTC
191414 CTT * 7 19/21 CTT CTT CTT CTC CTC CTT CTT
203490 AGC * 7 19/21 AGC AGC AGC AGC AGT AGC CGC
268011 ATC * 7 19/21 ATC ATC ATC ATC ATC ATC AGG
-----------------------------------------------------------------------------------------
Total sequence length......................... 302473
Total number of repeats detected.............. 24
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 4 3 1 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 1 1 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAC 1 0 1 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 5 4 1 0 0 0 0 0 0 0 0 0 0
CGG 1 1 0 0 0 0 0 0 0 0 0 0 0
CGC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
1 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 2
0 AAC + 0 ACA + 1 CAA + 0 GTT + 1 TTG + 0 TGT = 2
0 ATG + 0 TGA + 0 GAT + 0 CAT + 1 ATC + 1 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 1
1 AGC + 2 GCA + 1 CAG + 0 GCT + 5 CTG + 4 TGC = 13
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 1 CAC + 1 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 1 CGG + 0 GCC + 0 CCG + 1 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7296139|gb|AE003588.1|AE003588 Drosophila melanogaster genomic scaffold 142000013386046 section 14 of 16, complete sequence
Position Repeat Coverage Repeat
15749 CCT * 9 25/27 CCT CCT CCT CCT CCT CCT CAT CCT CAT
43772 TTG * 8 22/24 TTG TTC CTG TTG TTG TTG TTG TTG
46327 CGA * 7 19/21 CGA CAA CGA CGA CGA CGA CGG
47288 CGA * 10 28/30 CGA CGA CGA CGA CGA CGA CGA CGA GGA GGA
64261 TCC * 7 20/21 TCC TCC TCC CCC TCC TCC TCC
83658 GCA * 8 22/24 GCA GCA GCA GCT GCA TCA GCA GCA
85088 CAG * 10 28/30 CAG CAG CAG CAA CAG CAG CAG CAC CAG CAG
85196 CAG * 8 23/24 CAG CAG CAG CAG CAG CAA CAG CAG
91326 TGA * 7 19/21 TGA TGA TCA TGA TGA TGA TAA
108816 ATA * 14 38/42 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATC TGT
113315 CTC * 8 22/24 CTC CTC CTC CTC CTC CTT CTC CGC
119727 GAG * 7 20/21 GAG GAG GAG GAG GAG GAG GAA
139047 AGG * 11 30/33 AGG ATG AGG AGG AGG AGG AGG AGG AGG CGG TGG
140460 GTG * 7 19/21 GTG GTG GTG GTG GTA GTG CTG
172683 TGA * 8 22/24 TGA TGC TGA TGT TGA TGA TGA TGA
185914 CAT * 7 19/21 CAT CAT CAT CAT CAT CGT CGT
226022 CTG * 8 23/24 CTG CTG CTG CTG CTT CTG CTG CTG
272041 AAT * 7 19/21 AAT AAT AAT AAT AAA AAA AAT
272314 GAT * 8 22/24 GAT GAT GAT GAT GAT TAT GAT TAT
272401 ACA * 8 22/24 ACA ACA ACA ACA ACA ACA ACA AGG
275248 GCA * 13 36/39 GCA GCA GCT TCA GCA GCA GCA GCA GCA TCA GCA GCA GCA
280423 GCT * 8 22/24 GCT GCT GGT GCT GCT GCT GCT GGT
-----------------------------------------------------------------------------------------
Total sequence length......................... 299378
Total number of repeats detected.............. 22
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 0 0 1 0 0 0 0 0 0 0 0 0
AGG 1 0 1 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 2 2 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 1 0 1 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 1 1 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CGA 2 1 1 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 0 CAA + 0 GTT + 1 TTG + 0 TGT = 2
0 ATG + 2 TGA + 1 GAT + 1 CAT + 0 ATC + 0 TCA = 4
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 1 GAG + 1 CCT + 1 CTC + 1 TCC = 5
0 AGC + 2 GCA + 2 CAG + 1 GCT + 1 CTG + 0 TGC = 6
0 ACG + 2 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 2
0 ACC + 0 CCA + 0 CAC + 0 GGT + 1 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7296095|gb|AE003587.1|AE003587 Drosophila melanogaster genomic scaffold 142000013386046 section 13 of 16, complete sequence
Position Repeat Coverage Repeat
28997 TGA * 8 22/24 TGA TGA TGA TGA TGA TGT TGA TGT
36112 TCC * 7 19/21 TCC TTC TCC TCC ACC TCC TCC
36732 TGC * 10 27/30 TGC TGC TGC TGC TGC TGC TGC TGC TGT TTA
47824 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAC CAC
47848 CAC * 12 33/36 CAC CAC CAC CAC CAC CGC CAC CAG CAC CAG CAC CAC
95302 CTG * 7 20/21 CTG CTG CTG CTC CTG CTG CTG
98993 GCT * 8 23/24 GCT GTT GCT GCT GCT GCT GCT GCT
99020 GCT * 15 42/45 GCT GCT GCT GCT GGT GAT GCT GCT GCT GCT GTT GCT GCT GCT GCT
105755 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CAA
125936 CAA * 10 27/30 CAA CAA CAA CAA CAG CTA CAA CAA CAA CAG
131427 CTG * 8 23/24 CTG CTG CTG CTG CTG CTG CTT CTG
162508 AGA * 7 19/21 AGA AGA AGA GGA AGA CGA AGA
165832 CAT * 8 22/24 CAT CAT CAT CAT CAT CAT CAA CAG
172615 CAC * 10 27/30 CAC CAT CAC CAC CAC CAC CAT CAC CAC CTC
195794 TCG * 8 22/24 TCG TTC TCG TCG TCG TCG TCG TCG
202014 TGC * 7 20/21 TGC TGC TGC TGC TGC TGC CGC
226901 CAG * 7 19/21 CAG GAG CAG CAG CAG GAG CAG
251491 TGC * 7 19/21 TGC TGC TGC TGT TGC TGC TGT
251529 CTG * 10 27/30 CTG CTG TTG CTG CTT CTG CTG CTG CTG TTG
256135 GCT * 10 27/30 GCT GCT GCT CCT GCT GCT GCT CCT GCT CCT
258782 GCG * 8 22/24 GCG GCG GCG TCG GCG GCG GCG GAG
276624 GCT * 7 19/21 GCT GGA GCT GCT GCT GCT GCT
276689 TGC * 7 19/21 TGC TGC AAC TGC TGC TGC TGC
291460 TGC * 11 30/33 TGC TGC TGC TGC TGC TCC TGC TGC TGC TGT TGA
297169 CCG * 7 19/21 CCG CCG ACG ACG CCG CCG CCG
303625 AGC * 7 19/21 AGC AGC AGG AGC AGC AGG AGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 309388
Total number of repeats detected.............. 26
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGA 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 5 3 2 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 4 2 1 1 0 0 0 0 0 0 0 0 0
GCG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 0 1 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 3 3 0 0 0 0 0 0 0 0 0 0 0
CAC 2 0 2 0 0 0 0 0 0 0 0 0 0
CTG 3 2 1 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 1 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 1
0 AAC + 0 ACA + 1 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 1 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 1 TCC = 1
1 AGC + 0 GCA + 3 CAG + 4 GCT + 3 CTG + 5 TGC = 16
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 1 TCG = 1
0 ACC + 0 CCA + 2 CAC + 0 GGT + 0 GTG + 0 TGG = 2
0 GGC + 1 GCG + 0 CGG + 0 GCC + 1 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7296066|gb|AE003586.1|AE003586 Drosophila melanogaster genomic scaffold 142000013386046 section 12 of 16, complete sequence
Position Repeat Coverage Repeat
42047 CAG * 7 19/21 CAG CAG CAA CAT CAG CAG CAG
42352 GCA * 12 33/36 GCA ACA GCA GCA GCA GCA GCA GCA GCA ACA GCA GTA
42638 CAG * 12 33/36 CAG CTG CAT CAG CAG CAG CAG CAG CAG CAG CAA CAG
74294 TGC * 7 20/21 TGC TGC TGC TGC TTC TGC TGC
115978 ATC * 8 22/24 ATC ACC ATC ATC ATT ATC ATC ATC
128191 TGC * 10 27/30 TGC TCC TCC TGC TGC TGC TGC TGC TGC TCC
132194 TGC * 7 19/21 TGC TGC TGC CGC TGC TGC TGA
133420 TGC * 10 28/30 TGC TGC TGC TGC TGC TGC AGT TGC TGC TGC
134339 AGC * 10 28/30 AGC AGC AGC AGC AGC AGC AGA AGC AGC AGA
142948 CAA * 7 20/21 CAA TAA CAA CAA CAA CAA CAA
158932 CAG * 8 22/24 CAG CAG CAA CAG CAG CAG CAG CCG
159016 CAG * 9 25/27 CAG CAG CAG CAG CAT CAG CAG CAA CAG
162590 GGA * 7 19/21 GGA GCA GGA GCA GGA GGA GGA
195849 TAT * 7 19/21 TAT TAT TTT TAT GAT TAT TAT
208242 CAT * 13 37/39 CAT CAT CGT CAT CAT CAT CAT CAT CAT CAT CAT CAT TAT
248108 GCT * 8 24/24 GCT GCT GCT GCT GCT GCT GCT GCT
296911 GGA * 9 25/27 GGA GGA GGA GGC GGG GGA GGA GGA GGA
-----------------------------------------------------------------------------------------
Total sequence length......................... 306352
Total number of repeats detected.............. 17
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 0 1 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 4 2 2 0 0 0 0 0 0 0 0 0 0
GGA 2 2 0 0 0 0 0 0 0 0 0 0 0
GCA 1 0 1 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 0 0 1 0 0 0 0 0 0 0 0 0
CAG 4 3 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 1 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 0 TGA + 0 GAT + 1 CAT + 1 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 2 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 2
1 AGC + 1 GCA + 4 CAG + 1 GCT + 0 CTG + 4 TGC = 11
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7296031|gb|AE003585.1|AE003585 Drosophila melanogaster genomic scaffold 142000013386046 section 11 of 16, complete sequence
Position Repeat Coverage Repeat
7762 GCT * 7 19/21 GCT GCT GCT GGT GCT GCT GCC
67160 TGT * 7 19/21 TGT TGT TGT TGC TGT TGT CGT
134891 CTC * 7 19/21 CTC CTC CTC CTC CTC GTC GTC
156235 GCT * 10 27/30 GCT GCT GAT GCT GCT GAT GCT GCT GCT GTT
174226 TGC * 7 20/21 TGC TGC TGC TGC TGC TGC AGC
184135 TCA * 10 27/30 TCA TCA TCA TCA TCA TCA TCC TCA CCA CCA
184172 CAT * 10 28/30 CAT CAT CAT CAT GAT CAT CAT CAT CAT CGT
192949 ATT * 7 19/21 ATT ATT ATT ATT ATT TTT TTT
193103 ACA * 9 25/27 ACA ACA ACA ACA GCA GCA ACA ACA ACA
194304 TGT * 11 30/33 TGT TGT TGC TGT TGT TGT TGT TGT TGT TGT GTT
201316 TGA * 11 30/33 TGA TGA TGA TGA TGA TGA TGA TGG TGA TGT TGC
201607 TAA * 7 19/21 TAA TAA TAA TAA TAA TAT TAT
219708 TTG * 7 19/21 TTG TTG TTG TTG TTG TAT TTG
222033 GCT * 7 19/21 GCT GCT GCT GCT TCT GCT GCC
222080 TGC * 16 44/48 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC GTC CTC
240517 CTG * 8 22/24 CTG CAG CTA CTG CTG CTG CTG CTG
240622 GCT * 12 33/36 GCT GAT GCG GCT GCT GCT GCT GCT GCT GTT GCT GCT
240722 TGC * 10 27/30 TGC TGC TGC TGC TGC TGC TGC TGC CGT GGC
240970 TGC * 8 22/24 TGC TGA TGC TGC TGC TGC TGC TGA
241015 TGC * 14 38/42 TGC TGC TGT TGC TGC TGT TGC TGC TGC TGC TGC TGT TGC TGA
291036 TTG * 7 19/21 TTG TTG TTT TTG TTG CTG TTG
292350 CAA * 8 22/24 CAA CAA CAA CAA CAA CTA CAA CCA
-----------------------------------------------------------------------------------------
Total sequence length......................... 306573
Total number of repeats detected.............. 22
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGA 1 0 1 0 0 0 0 0 0 0 0 0 0
TGT 2 1 1 0 0 0 0 0 0 0 0 0 0
TGC 5 2 1 1 1 0 0 0 0 0 0 0 0
TCA 1 0 1 0 0 0 0 0 0 0 0 0 0
GCT 4 2 2 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 0 1 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 1 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 1 CAA + 0 GTT + 2 TTG + 2 TGT = 6
0 ATG + 1 TGA + 0 GAT + 1 CAT + 0 ATC + 1 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 1
0 AGC + 0 GCA + 0 CAG + 4 GCT + 1 CTG + 5 TGC = 10
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295986|gb|AE003584.1|AE003584 Drosophila melanogaster genomic scaffold 142000013386046 section 10 of 16, complete sequence
Position Repeat Coverage Repeat
33242 AAC * 7 19/21 AAC AGC AAC TAC AAC AAC AAC
45413 AGG * 7 19/21 AGG AGG ATG AGG AGA AGG AGG
48336 TGA * 7 19/21 TGA TGA TGA TGA TGA TGA GGC
61642 GAT * 7 19/21 GAT GGT CAT GAT GAT GAT GAT
63378 ATG * 7 20/21 ATG ATG ATG ATG ATG TTG ATG
67984 ATC * 7 19/21 ATC ATC CTC ATC ATC GTC ATC
69428 TGC * 7 19/21 TGC TGC TGC TGC CGC TGC CGC
69476 GAG * 7 19/21 GAG GAG GAA GAG GAG GAG GAA
71587 CAG * 10 27/30 CAG CAG CAG CAA CAG CAG CAG CAG CAA CAA
71659 CAG * 7 19/21 CAG TTG CAG CAG CAG CAG CAG
107636 AAT * 8 22/24 AAT AAT AAT AAT GAT AAT AAT AAC
110009 CAG * 7 19/21 CAG CAG CAG AAG TAG CAG CAG
111183 TGC * 8 22/24 TGC TGC TGT TGC TGC TAC TGC TGC
128011 GCA * 12 33/36 GCA GCA GCA GCA GCA GCA GCA ACA TCA GCA GCA ACA
128372 GCA * 8 22/24 GCA GCA GCA GCA GCA GGA GCA ACA
128405 GCA * 12 33/36 GCA GCA ACA GCA GCA GCA GCA GCA GCA GCA ACA ACA
129398 ATT * 7 19/21 ATT ATT ATT ATT ATT ATT TAT
157622 GCT * 7 19/21 GCT CCT GCT GCT CCT GCT GCT
179640 TAA * 7 19/21 TAA TAA TAA TAA TAA CAG TAA
188160 CCA * 7 19/21 CCA CAA TCA CCA CCA CCA CCA
198004 GAT * 8 22/24 GAT GGT GAT GAT GAT GAT GTT GAT
207162 ATC * 7 19/21 ATC ATC ATC ATC GCC ATC ATC
215491 GAT * 7 19/21 GAT GAT GGT GAT GGT GAT GAT
245490 CCA * 7 19/21 CCA CCA CCA CCA CGA CGA CCA
246287 CAG * 10 27/30 CAG CAG CAG CAG CAG CAG CCG CAG AAG AAG
258528 TGT * 9 25/27 TGT TCT CGT TGT TGT TGT TGT TGT TGT
272248 GAT * 7 20/21 GAT GAT GAT GAC GAT GAT GAT
283693 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC TGT TGG
317495 GTT * 8 22/24 GTT GTT GTT GTT GTT GTT GTT GCA
-----------------------------------------------------------------------------------------
Total sequence length......................... 324484
Total number of repeats detected.............. 29
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 2 2 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 3 3 0 0 0 0 0 0 0 0 0 0 0
GAT 4 4 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 3 1 2 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 4 2 2 0 0 0 0 0 0 0 0 0 0
CCA 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 1 TAA + 1 ATT + 0 TTA + 0 TAT = 3
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 0 CAA + 1 GTT + 0 TTG + 1 TGT = 3
1 ATG + 1 TGA + 4 GAT + 0 CAT + 2 ATC + 0 TCA = 8
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 2
0 AGC + 3 GCA + 4 CAG + 1 GCT + 0 CTG + 3 TGC = 11
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 2 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295946|gb|AE003583.1|AE003583 Drosophila melanogaster genomic scaffold 142000013386046 section 9 of 16, complete sequence
Position Repeat Coverage Repeat
4555 TGC * 12 33/36 TGC TGC TGC TTC TGC TGC TTC TGC TGC TTC TGC TGC
7969 CAT * 8 22/24 CAT CAT CAG CAA CAT CAT CAT CAT
20332 GCA * 7 19/21 GCA GCA GCA GCA GCA ACA ACA
35326 TCC * 7 19/21 TCC TCC TCC TCC TGT TCC TCC
37608 GAC * 7 19/21 GAC GAC GAC GAC GAC GAT GAT
37716 TGC * 7 19/21 TGC TGA TGC TGC TTC TGC TGC
45568 GAT * 7 19/21 GAT GAT GAC GAT GAC GAT GAT
49940 GCA * 7 19/21 GCA GCA GCA TCT GCA GCA GCA
50699 CCT * 8 23/24 CCT CCT CCT CCA CCT CCT CCT CCT
52586 GTC * 7 19/21 GTC GTC GTT GTC GTC GTC CTC
58153 ATA * 7 20/21 ATA ATA ATA ATA ATA ATA ATG
70209 TTC * 7 20/21 TTC TTC TTC TTC TTC TTC TTG
89359 AGA * 7 19/21 AGA AGA AGA AGA AAA AGA AGT
89978 GCT * 7 19/21 GCT GCT GCT GCT GGT GTT GCT
104600 GCT * 8 22/24 GCT GAT GCT GCT GCT GCT GCT GCG
108580 GCA * 7 19/21 GCA CCA GCA GCA GCA GCA ACA
108706 CAG * 11 30/33 CAG CAG CAG CAG CAG CAG CAG GAG CAA CAA CAG
110877 TGA * 8 22/24 TGA TGC TCA TGA TGA TGA TGA TGA
133932 CGA * 7 20/21 CGA CGA CGA CGA CGA GGA CGA
155858 CTG * 8 22/24 CTG CTG CTG CTG TTG CTG CTG CTC
186097 TAT * 7 19/21 TAT TAC TAT TAT TAT TAT TTT
194248 ATG * 7 19/21 ATG ATG ATG ATG ATG GTG GTG
210691 TGC * 7 19/21 TGC TGG TGC TGC TGC TGC TGG
253830 CCA * 11 30/33 CCA CCA CCA CCA CCA CCA CCA TCA ACA TCA CCA
267012 TGT * 7 19/21 TGT TCT TGT TGT TGC TGT TGT
289529 GAT * 7 19/21 GAT GAT GAT GAT GAT GGT GAA
298003 GCA * 7 19/21 GCA GCA GCA GCC GCC GCA GCA
-----------------------------------------------------------------------------------------
Total sequence length......................... 303356
Total number of repeats detected.............. 27
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 3 2 1 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 2 2 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 4 4 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 0 1 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CGA 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 0 1 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 2
0 AAG + 1 AGA + 0 GAA + 0 CTT + 1 TTC + 0 TCT = 2
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 1 TGT = 1
1 ATG + 1 TGA + 2 GAT + 1 CAT + 0 ATC + 0 TCA = 5
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 1 CCT + 0 CTC + 1 TCC = 2
0 AGC + 4 GCA + 1 CAG + 2 GCT + 1 CTG + 3 TGC = 11
0 ACG + 1 CGA + 1 GAC + 0 CGT + 1 GTC + 0 TCG = 3
0 ACC + 1 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295900|gb|AE003582.1|AE003582 Drosophila melanogaster genomic scaffold 142000013386046 section 8 of 16, complete sequence
Position Repeat Coverage Repeat
27850 GAC * 7 19/21 GAC GAT GAC GAC GAC GAC GTC
44821 CTA * 8 22/24 CTA CTA CTA CTA CTA CTA TTA CTG
73101 TCA * 8 22/24 TCA TCA TTA TCA TCA TCA TCA TCT
83444 TTC * 7 19/21 TTC TTC TTG TTC TTC TTC TTT
95584 AAT * 12 33/36 AAT AAT AAT AAT AAT AAT AAC AAT AAC AAT AAC AAT
96326 GAT * 7 19/21 GAT GAT GAT GAT GAT CAT CAT
105701 CAT * 14 40/42 CAT CAC CAT CCT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
131229 AGC * 15 42/45 AGC AGC AGT AGC AGC AGC AGC AGC AGC AGC AGC AGC AGC AGC GCC
166337 TAT * 8 23/24 TAT TAT TAT TAT TAT TAT TAT GAT
223204 CCT * 7 19/21 CCT CCT CCT CGT GCT CCT CCT
242095 CAT * 10 28/30 CAT CAT CAT CAC CAT CAT CAT CAT CAT CAC
246838 CAG * 7 19/21 CAG CAG CCG CAG CAG CAA CAG
-----------------------------------------------------------------------------------------
Total sequence length......................... 295312
Total number of repeats detected.............. 12
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 0 1 0 0 0 0 0 0 0 0 0 0
AGC 1 0 0 1 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 2 0 1 1 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTA 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 1 TTC + 0 TCT = 1
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 1 GAT + 2 CAT + 0 ATC + 1 TCA = 4
0 AGT + 0 GTA + 0 TAG + 0 ACT + 1 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 1 CCT + 0 CTC + 0 TCC = 1
1 AGC + 0 GCA + 1 CAG + 0 GCT + 0 CTG + 0 TGC = 2
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295843|gb|AE003581.1|AE003581 Drosophila melanogaster genomic scaffold 142000013386046 section 7 of 16, complete sequence
Position Repeat Coverage Repeat
9591 ACC * 9 26/27 ACC ACC ACC ACC ACC ACC AGC ACC ACC
47803 AAG * 7 20/21 AAG AGG AAG AAG AAG AAG AAG
48691 TGA * 8 22/24 TGA TGA TGA TGA TGA CGT TGA TGA
57725 GCT * 7 19/21 GCT GCT GCT GCT GCT TCA GCT
110697 CTT * 7 19/21 CTT CTC CTT CTT CTT TTT CTT
115981 TGC * 8 22/24 TGC TGC TAC TGC TGC TGC TGC TGG
121457 TGC * 10 27/30 TGC TGC TGC TGC TGC TGC TGC TGG TGG GGC
122425 TGT * 7 19/21 TGT TGC TGC TGT TGT TGT TGT
122941 TGC * 8 23/24 TGC TGC TGC TGC TGC TGC TGC TGT
123099 CTG * 7 19/21 CTG TTG CTG TTG CTG CTG CTG
172724 CTG * 8 22/24 CTG CTG CAG CTG CAG CTG CTG CTG
172820 CGA * 7 19/21 CGA CGA CGA CGA TGA CGA GGA
175120 GTT * 7 19/21 GTT ATT GTT ATT GTT GTT GTT
175143 TAT * 7 19/21 TAT TAT TAT TAT TAT TGT TGT
182562 TTG * 14 38/42 TTG TTT TTG TTG TTG TTG TGG TTG TTG TTG TTG TTC TTG TCG
187807 TCC * 7 19/21 TCC TCC TCC TCA CCC TCC TCC
188286 CTG * 10 27/30 CTG CTG CTG CTG TTG CTG CTG CTG CAG TTG
191269 TTG * 7 19/21 TTG TTG TGG TTG TTG TTA TTG
198428 GTG * 8 22/24 GTG GTG TTG GTG GTG GTG GTG GTT
206638 TGC * 7 20/21 TGC TGC CGC TGC TGC TGC TGC
210501 TGC * 7 19/21 TGC TGC TGC CGC TGC TGC TGA
218233 GAT * 8 22/24 GAT GGT GAT GAT GAT GAT GAT GGT
219643 TTA * 11 30/33 TTA TTG TTA TTA TTA TTA TTA TTA TTG TTG TTA
221499 TGC * 14 40/42 TGC TGC CAC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
222495 CGT * 8 22/24 CGT CGT CGT CCT CGT CGT CGT CCT
227577 CAA * 11 30/33 CAA CAA CAA AAA CAA CAA CAA CAA CAA CAC TAA
245784 TGC * 7 20/21 TGC TGG TGC TGC TGC TGC TGC
246194 TGT * 7 19/21 TGT AGT TGT TGA TGT TGT TGT
247501 GTT * 7 19/21 GTT GTT GTT GTT GTT GAT TTT
250314 TTG * 7 19/21 TTG TTG TTG TTG TGA TTG TTG
297717 CTG * 7 20/21 CTG CTG CTC CTG CTG CTG CTG
303676 TAT * 8 22/24 TAT TAT TAT TAT TAT TAT TAC TTT
-----------------------------------------------------------------------------------------
Total sequence length......................... 306436
Total number of repeats detected.............. 32
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 2 2 0 0 0 0 0 0 0 0 0 0 0
TTA 1 0 1 0 0 0 0 0 0 0 0 0 0
TTG 3 2 0 1 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 7 5 1 1 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 2 2 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 0 1 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 4 3 1 0 0 0 0 0 0 0 0 0 0
CGA 1 1 0 0 0 0 0 0 0 0 0 0 0
CGT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 2 TAT = 3
1 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 2
0 AAC + 0 ACA + 1 CAA + 2 GTT + 3 TTG + 2 TGT = 8
0 ATG + 1 TGA + 1 GAT + 0 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 1 TCC = 1
0 AGC + 0 GCA + 0 CAG + 1 GCT + 4 CTG + 7 TGC = 12
0 ACG + 1 CGA + 0 GAC + 1 CGT + 0 GTC + 0 TCG = 2
1 ACC + 0 CCA + 0 CAC + 0 GGT + 1 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295809|gb|AE003580.1|AE003580 Drosophila melanogaster genomic scaffold 142000013386046 section 6 of 16, complete sequence
Position Repeat Coverage Repeat
1254 TGC * 8 23/24 TGC TGC TGC TGC TGC TGC TGC TGG
14216 TGC * 8 22/24 TGC TGC GGC TGC TGC TGC TGC TGA
14710 GCT * 7 19/21 GCT GAT GCT GCT GCT GCT CCT
14845 GCT * 7 19/21 GCT GCG GCT GCT TCT GCT GCT
68757 CAA * 9 25/27 CAA CAA CCA CAA CAA CAA GAA CAA CAA
69202 CAT * 7 19/21 CAT CAT CAT CAT CAT CAG CCT
78406 CAG * 7 19/21 CAG CAG CAA CAT CAG CAG CAG
78466 CAG * 8 22/24 CAG CAG TCG CAG CAG CAG CAG CAG
78597 AGC * 10 27/30 AGC AGC AGC AGC AGC AGC AGC AAC AAC AAC
78988 GCA * 7 21/21 GCA GCA GCA GCA GCA GCA GCA
154686 CAT * 7 20/21 CAT CAG CAT CAT CAT CAT CAT
221279 ATA * 18 50/54 ATA ATA ACA ATA ATA ATA ACA ATA ATA ATA ATA ATA TTA ATA ATA ATT ATA ATA
230149 AGC * 10 27/30 AGC AGC AGC AGG AGC AGC AGG AGC AGC AGA
273104 TTG * 7 19/21 TTG TTG TTA TTC TTG TTG TTG
283224 CAC * 8 22/24 CAC CAC CAC CAC CAC CAC CAT CAG
-----------------------------------------------------------------------------------------
Total sequence length......................... 295223
Total number of repeats detected.............. 15
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 1 0 0 0 1 0 0 0 0 0 0 0 0
AGC 2 0 2 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 1 CAA + 0 GTT + 1 TTG + 0 TGT = 2
0 ATG + 0 TGA + 0 GAT + 2 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
2 AGC + 1 GCA + 2 CAG + 2 GCT + 0 CTG + 2 TGC = 9
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295765|gb|AE003579.1|AE003579 Drosophila melanogaster genomic scaffold 142000013386046 section 5 of 16, complete sequence
Position Repeat Coverage Repeat
37433 AAT * 11 30/33 AAT AAT AAT AAT AAT AAT AAT AAC AAT ATT AAA
63366 TGA * 7 19/21 TGA TAA TGA CGA TGA TGA TGA
70678 GGA * 7 20/21 GGA GGA GGA GGA GGA GGT GGA
93608 GAT * 7 19/21 GAT GAT GAT GAT GAT GAT TTT
95675 CAC * 7 19/21 CAC CAG CAC CAC CAC CAC AAC
104488 TGT * 7 19/21 TGT TGT TGT TGT TGT TTT GGT
108861 GCA * 7 19/21 GCA GCA TCA TCA GCA GCA GCA
128808 CAG * 10 28/30 CAG CGG CAG AAG CAG CAG CAG CAG CAG CAG
128841 CAG * 11 30/33 CAG CAG CAG CAG CAG CAG CAG CAG CAA CGG CAA
129278 CAG * 8 22/24 CAG CGG CAG CAG CAG CAG CAG CAA
130059 CAG * 7 19/21 CAG CAG CAG CAA CAA CAG CAG
130109 GCA * 7 19/21 GCA GAT GCA GCA GCA GCA GCA
130239 CAG * 8 22/24 CAG CAG CAA CAG CAG CAG CAG CAA
137060 TCT * 7 21/21 TCT TCT TCT TCT TCT TCT TCT
137663 TTG * 8 22/24 TTG TTA TTG TTT TTG TTG TTG TTG
139469 CAT * 7 19/21 CAT CAT CAT CAT CAG CAT CAG
155833 TGC * 8 22/24 TGC CGC TGC TGC TGC TGC AGC TGC
166187 TGT * 7 19/21 TGT TGT TGT TAT TGT TGT TTT
187916 ATT * 8 22/24 ATT GTT TTT ATT ATT ATT ATT ATT
201644 CAA * 7 19/21 CAA CAA CAG TAA CAA CAA CAA
201894 CAA * 7 19/21 CAA CAC AAA CAA CAA CAA CAA
244197 AGC * 7 20/21 AGC AGC AGC AGC GGC AGC AGC
252904 GCA * 8 22/24 GCA GCA GCA GCA GCA GCA GCC ACA
-----------------------------------------------------------------------------------------
Total sequence length......................... 304383
Total number of repeats detected.............. 23
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 0 1 0 0 0 0 0 0 0 0 0 0
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 3 3 0 0 0 0 0 0 0 0 0 0 0
CAA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 5 3 2 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 1 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 1 TCT = 1
0 AAC + 0 ACA + 2 CAA + 0 GTT + 1 TTG + 2 TGT = 5
0 ATG + 1 TGA + 1 GAT + 1 CAT + 0 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 1
1 AGC + 3 GCA + 5 CAG + 0 GCT + 0 CTG + 1 TGC = 10
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295742|gb|AE003578.1|AE003578 Drosophila melanogaster genomic scaffold 142000013386046 section 4 of 16, complete sequence
Position Repeat Coverage Repeat
37915 TGA * 7 19/21 TGA TGG TGA TGA TGG TGA TGA
126775 AGG * 7 19/21 AGG AGG AGG AGT TGG AGG AGG
129019 GCA * 7 19/21 GCA GCA GCA GCA ACA GCG GCA
156405 CAT * 7 20/21 CAT CAT CAT CAT CAC CAT CAT
161445 CAT * 8 22/24 CAT CAT CAT CAT CCT CAT CCT CAT
169389 CCA * 7 19/21 CCA CCA CCA CCA CCA CCT CCT
187399 TCA * 7 20/21 TCA TCA TTA TCA TCA TCA TCA
217504 GGC * 7 20/21 GGC GGC GGC GGC AGC GGC GGC
225954 GCT * 10 28/30 GCT GCT GCT GCT GCT GCT GCT GCT GGT CCT
227703 GCA * 7 19/21 GCA GCA GCA GCA CCA ACA GCA
235967 TGA * 7 19/21 TGA TGA TGA TGA TGC TGA CGA
263896 GCC * 7 19/21 GCC GCC GCC GCA GCC GCC TCC
264230 CCG * 7 19/21 CCG CCG CCG CTG CCG CCG CCA
270176 GAT * 7 19/21 GAT GAC GAT GAT GAT GAT GGT
293414 TGC * 11 31/33 TGC TGC TGC TGC TGC TGT TGT TGC TGC TGC TGC
293653 CTG * 11 30/33 CTG CTG CTG CTG TTG CTG ATG CTG CTG CTG CGG
306555 AAC * 11 32/33 AAC AAC AAC AAC AAC AAC AAC AAC TAC AAC AAC
-----------------------------------------------------------------------------------------
Total sequence length......................... 307748
Total number of repeats detected.............. 17
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 0 1 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 1 0 1 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
GCT 1 0 1 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 2 2 0 0 0 0 0 0 0 0 0 0 0
CTG 1 0 1 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 2 TGA + 1 GAT + 2 CAT + 0 ATC + 1 TCA = 6
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 1
0 AGC + 2 GCA + 0 CAG + 1 GCT + 1 CTG + 1 TGC = 5
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 1 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 1
1 GGC + 0 GCG + 0 CGG + 1 GCC + 1 CCG + 0 CGC = 3
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295725|gb|AE003577.1|AE003577 Drosophila melanogaster genomic scaffold 142000013386046 section 3 of 16, complete sequence
Position Repeat Coverage Repeat
5646 GAC * 7 20/21 GAC GAC GAC GAC GAC GAC GGC
42100 GCA * 10 28/30 GCA GCT ACA GCA GCA GCA GCA GCA GCA GCA
60389 GTC * 10 27/30 GTC GTC GTC CTT GTC GTC GTC GTC GTC GTA
62676 CTG * 11 30/33 CTG CTG CTG CTG CTG CTG CTT TTG CTG CTG CTA
65573 GGT * 14 39/42 GGT AGT GGT AGT GGT GGT GGT GGT GGT GGT GGT GGT GTT GGT
111177 CAG * 7 19/21 CAG CCG CAG CAG CAG CAG CAA
111492 CAG * 7 20/21 CAG CAG CAG CAG CAG CAG CAC
121993 TAC * 8 23/24 TAC TAC TAC TAC TAC TAC TAC TAT
128280 TAT * 7 19/21 TAT TAT TAT TAT TAT TAT ATT
149623 TGT * 8 23/24 TGT TGT CGT TGT TGT TGT TGT TGT
166275 GCT * 7 19/21 GCT GCT GCA GCT GCA GCT GCT
181761 TAC * 7 19/21 TAC TAA TAC TAC TAC TAA TAC
188269 GTT * 7 19/21 GTT GTT GTC GTT GGT GTT GTT
188414 TTG * 8 22/24 TTG TTG TTG TTG TGG TTG TGG TTG
188474 TTG * 7 19/21 TTG TGG TTG TTG TTG TCG TTG
257408 CAG * 7 19/21 CAG CAG CAG CAG CAA CAG CAA
257679 AGC * 7 19/21 AGC AGC AGC AGC AGC AGC TGG
257796 AGA * 7 19/21 AGA AGA AGA AGA AGA TAA AGA
258217 CAA * 7 19/21 CAA CAA CAA CAA CAA CCA CAC
-----------------------------------------------------------------------------------------
Total sequence length......................... 267576
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGA 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TAC 2 2 0 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTC 1 0 1 0 0 0 0 0 0 0 0 0 0
GGT 1 0 0 1 0 0 0 0 0 0 0 0 0
GCA 1 0 1 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 3 3 0 0 0 0 0 0 0 0 0 0 0
CTG 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 1
0 AAG + 1 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 1
0 AAC + 0 ACA + 1 CAA + 1 GTT + 2 TTG + 1 TGT = 5
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 2 TAC = 2
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 1 GCA + 3 CAG + 1 GCT + 1 CTG + 0 TGC = 7
0 ACG + 0 CGA + 1 GAC + 0 CGT + 1 GTC + 0 TCG = 2
0 ACC + 0 CCA + 0 CAC + 1 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295692|gb|AE003576.1|AE003576 Drosophila melanogaster genomic scaffold 142000013386046 section 2 of 16, complete sequence
Position Repeat Coverage Repeat
2031 AAT * 14 39/42 AAT AAT AAC AAT AAT AAT AAT AAT ATT AAT AAT AAT TAT AAT
9157 AAT * 14 39/42 AAT AAT AAC AAT AAT AAT AAT AAT ATT AAT AAT AAT TAT AAT
20265 AAT * 7 19/21 AAT AAT AAT AAT AAT AAC AAA
38504 CAT * 8 23/24 CAT CAT CAT CAT CAT CAT CGT CAT
141801 ACC * 7 19/21 ACC TGC ACC ACC ACC ACC ACC
162769 AGC * 7 20/21 AGC AGC AGC AGC AGC AGC AGA
194469 AAC * 8 22/24 AAC AAC CAC AAG AAC AAC AAC AAC
209454 GAC * 8 22/24 GAC GAC GAC GAC GAC CAC AAC GAC
213462 GGT * 8 22/24 GGT GGC GGT GGC GGT GGT GGT GGT
267358 TGC * 7 19/21 TGC TGC TGC TGC TAC TGC GGC
269540 TGC * 7 19/21 TGC TCC TGC TTC TGC TGC TGC
303540 CAG * 11 30/33 CAG TAG CAG CAG CAG CAG CAG CAG CAG CAG TGG
-----------------------------------------------------------------------------------------
Total sequence length......................... 304634
Total number of repeats detected.............. 12
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 3 1 0 2 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
3 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 3
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 0 GCA + 1 CAG + 0 GCT + 0 CTG + 2 TGC = 4
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 1
1 ACC + 0 CCA + 0 CAC + 1 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295650|gb|AE003575.1|AE003575 Drosophila melanogaster genomic scaffold 142000013386046 section 1 of 16, complete sequence
Position Repeat Coverage Repeat
56257 CGC * 7 19/21 CGC CAG CGC CGC CGC CGC CGC
56913 CAA * 7 19/21 CAA CAG CAC CAA CAA CAA CAA
56934 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAG GAA
59650 CTC * 8 22/24 CTC CTC CTC CTC CTA CTC ATC CTC
73003 TGC * 12 33/36 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGA TGA TGA
76494 GCA * 8 22/24 GCA GAA GCA GCA GCA ACA GCA GCA
90563 GTT * 8 23/24 GTT GTT GTT ATT GTT GTT GTT GTT
91861 TTG * 7 19/21 TTG TTC TTG TTG TTG TTG CTG
93151 GCC * 7 19/21 GCC GCA GCC GCC GCT GCC GCC
94233 GCA * 7 19/21 GCA GCA CCA ACA GCA GCA GCA
95742 CAT * 7 19/21 CAT CAT TAT CAT TAT CAT CAT
99259 GCT * 8 22/24 GCT GCT GCT GCA GGT GCT GCT GCT
99524 TGT * 7 19/21 TGT TGT TGT TGT TGC TGC TGT
103038 CCA * 8 22/24 CCA CCG CCA CCA CCA CCA CCA ACA
116905 GCA * 7 19/21 GCA ACA GCA ACA GCA GCA GCA
145513 CGT * 7 19/21 CGT CTT CCT CGT CGT CGT CGT
149297 GAT * 7 19/21 GAT GGT GAT GAT GAT GAT GTT
164879 TGC * 8 22/24 TGC TGC TGA TGC TGC TGC TGT TGC
179142 CAC * 8 22/24 CAC CAC CAC CAC CAC CAC CAC TGC
183944 GCT * 7 20/21 GCT GCT GCT GTT GCT GCT GCT
282188 CAG * 10 28/30 CAG CAG CAG CAG CAG CAG AAG CAG CTG CAG
284716 CAT * 7 19/21 CAT CAT CAT CAT AAT CAT AAT
290484 TAG * 7 19/21 TAG GAG AAG TAG TAG TAG TAG
290506 AGT * 8 22/24 AGT AGT AGT AGT AGC AGG AGT AGT
290533 AGT * 38 103/114 AGT AGT AGT AGT AGT AGT AGT AGT AGT AGG AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGG AGT AGT AGT AGT TGT AGT ACG AGT AGT AGT AGG GCT TAA
299021 TCC * 7 19/21 TCC TCA TCC TCA TCC TCC TCC
302346 AGC * 8 22/24 AGC AGC AGC GGC AGC AGC AGC AAC
305599 CAT * 7 19/21 CAT CAT CGT CAT CAT CAT CTT
325169 GCA * 7 19/21 GCA GCA ACA GCA GCA GCA GCG
325311 GCT * 8 22/24 GCT GCT GTT GCT TCT GCT GCT GCT
-----------------------------------------------------------------------------------------
Total sequence length......................... 327242
Total number of repeats detected.............. 30
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGT 2 1 0 0 0 0 0 0 0 0 0 1 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAG 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 1 1 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 4 4 0 0 0 0 0 0 0 0 0 0 0
GCT 3 3 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 3 3 0 0 0 0 0 0 0 0 0 0 0
CAG 2 1 1 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CGT 1 1 0 0 0 0 0 0 0 0 0 0 0
CGC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 1 CAA + 1 GTT + 1 TTG + 1 TGT = 4
0 ATG + 0 TGA + 1 GAT + 3 CAT + 0 ATC + 0 TCA = 4
2 AGT + 0 GTA + 1 TAG + 0 ACT + 0 CTA + 0 TAC = 3
0 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 1 TCC = 2
1 AGC + 4 GCA + 2 CAG + 3 GCT + 0 CTG + 2 TGC = 12
0 ACG + 0 CGA + 0 GAC + 1 CGT + 0 GTC + 0 TCG = 1
0 ACC + 1 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 1 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7316108|gb|AE002690.1|AE002690 Drosophila melanogaster genomic scaffold 142000013386055, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7298777|gb|AE003670.1|AE003670 Drosophila melanogaster genomic scaffold 142000013386055 section 63 of 63, complete sequence
Position Repeat Coverage Repeat
4658 TGC * 7 20/21 TGC TGC TGG TGC TGC TGC TGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 117404
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 1 TGC = 1
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298740|gb|AE003669.1|AE003669 Drosophila melanogaster genomic scaffold 142000013386055 section 62 of 63, complete sequence
Position Repeat Coverage Repeat
5270 CTG * 8 22/24 CTG CTG CTG CTG CTG GTG CTG CTT
53615 CAT * 7 19/21 CAT CAT CAT TAC CAT CAT CAT
80579 ATA * 7 19/21 ATA ATA ATA ATA ACA ATA ATG
96825 GAG * 7 19/21 GAG AAA GAG GAG GAG GAG GAG
118819 CAA * 12 33/36 CAA CAA CAA CAA CAA CAA CAA CAA CAA CTA CAG TAA
152683 GAT * 7 19/21 GAT GAT GAT GAT GAT GAA GAG
154579 AGG * 7 19/21 AGG AGG AGG AGG AGG TGG AAG
200281 CAT * 7 19/21 CAT CAT CAT CGC CAT CAT CAT
247368 ATT * 7 19/21 ATT ACG ATT ATT ATT ATT ATT
-----------------------------------------------------------------------------------------
Total sequence length......................... 272526
Total number of repeats detected.............. 9
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 0 1 0 0 0 0 0 0 0 0 0 0
CAT 2 2 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 1 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 1 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 0 TGA + 1 GAT + 2 CAT + 0 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 2
0 AGC + 0 GCA + 0 CAG + 0 GCT + 1 CTG + 0 TGC = 1
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298706|gb|AE003668.1|AE003668 Drosophila melanogaster genomic scaffold 142000013386055 section 61 of 63, complete sequence
Position Repeat Coverage Repeat
15230 CAA * 7 19/21 CAA AAA CAA CAA CCA CAA CAA
28480 CAA * 12 34/36 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA TAG
28529 AAC * 7 19/21 AAC AAC AAC AAC AAT AAC AAT
34138 GAG * 12 34/36 GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GGA
39112 AGG * 7 19/21 AGG AGG CGT AGG AGG AGG AGG
39930 CAA * 7 19/21 CAA AAG CAA CAA CAA CAA CAA
59336 CAA * 8 23/24 CAA CAA CAA CAA CAA CAA CAG CAA
66663 GCA * 11 30/33 GCA GCA GCG GCA GCA GCA ACA GCA GCA GCA ACA
198336 CAA * 8 22/24 CAA CAA CAA CAA CAA CAA TAG CAA
204229 GAT * 8 22/24 GAT GAC GCT GAT GAT GAT GAT GAT
210172 GTT * 10 27/30 GTT GTT GTT GTT GTT GTT GTT GCT GCT GCT
210326 TCG * 7 19/21 TCG CCG TCG TTG TCG TCG TCG
214230 GCA * 8 22/24 GCA GCA GCA GCA GCA GCA TCA GGA
254462 TAA * 7 20/21 TAA TAA AAA TAA TAA TAA TAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 267300
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 0 1 0 0 0 0 0 0 0 0 0 0
GTT 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 2 1 1 0 0 0 0 0 0 0 0 0 0
CAA 5 4 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 5 CAA + 1 GTT + 0 TTG + 0 TGT = 7
0 ATG + 0 TGA + 1 GAT + 0 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 2
0 AGC + 2 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 2
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 1 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298684|gb|AE003667.1|AE003667 Drosophila melanogaster genomic scaffold 142000013386055 section 60 of 63, complete sequence
Position Repeat Coverage Repeat
4681 CAT * 9 25/27 CAT CAT CAT CAT CAT TAT CAT CAT CTT
19453 TCG * 11 30/33 TCG TCG TCG TCG TCG TCT TCG TCG TCC TCG TCA
43026 CTG * 7 19/21 CTG CTC CTG CTC CTG CTG CTG
74216 AAT * 11 30/33 AAT AAT AAT AAT AAT AAT AAT AGT ATT TAT AAT
79538 TGC * 8 22/24 TGC TGC TGC TGT TGC TGC CGC TGC
79740 CTG * 8 22/24 CTG CGG CCG CTG CTG CTG CTG CTG
150995 ATG * 7 19/21 ATG ATA ATG ATG ATG TTG ATG
181195 TGC * 8 22/24 TGC TGC TGC TGC TGA TGC TGC TCC
186878 TGC * 7 21/21 TGC TGC TGC TGC TGC TGC TGC
192479 AGG * 7 19/21 AGG AGG AGG AGG AGG ATG TGG
205610 TGC * 7 19/21 TGC TGT TGC TGC TGC TGC TGT
206102 TGC * 12 33/36 TGC TGC TGC TGC TGG TGC TGC TGC TGC TGT TGC TGT
206141 TGC * 8 22/24 TGC TGC TGC TGT TGC TGT TGC TGC
206551 CTG * 11 30/33 CTG CTG CTG CTG CTG CTG CTG TTG TTG TTG CTG
206585 TGC * 8 23/24 TGC TGC TGC TGC TGC TGC TGC TGG
207345 GCT * 9 25/27 GCT GCT GCT GCT GCT GAT GCT GCT CCT
207375 GCT * 11 30/33 GCT TCT GCT GCT GCT GCT GTT GCT GCT GCT GTT
210616 CTC * 8 23/24 CTC CTC CTC CTC CTC CTC CTC CTG
225674 TGG * 12 34/36 TGG TGG TGA TGG TGG TGG TGG TGG TGG TGG TGG TGC
230645 ATG * 7 19/21 ATG ATG TTG ATG GTG ATG ATG
234282 GGT * 7 20/21 GGT GGA GGT GGT GGT GGT GGT
240632 AAC * 7 20/21 AAC AAC AAC AAC AAC AGC AAC
-----------------------------------------------------------------------------------------
Total sequence length......................... 263704
Total number of repeats detected.............. 22
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 0 1 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 2 2 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 7 6 1 0 0 0 0 0 0 0 0 0 0
TCG 1 0 1 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 2 1 1 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 3 2 1 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 1
2 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 2
0 AGC + 0 GCA + 0 CAG + 2 GCT + 3 CTG + 7 TGC = 12
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 1 TCG = 1
0 ACC + 0 CCA + 0 CAC + 1 GGT + 0 GTG + 1 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298667|gb|AE003666.1|AE003666 Drosophila melanogaster genomic scaffold 142000013386055 section 59 of 63, complete sequence
Position Repeat Coverage Repeat
111380 CAT * 7 19/21 CAT CAT CAT CAT AAT CAT TAT
136760 CAG * 8 22/24 CAG CAG CAG CAT CTG CAG CAG CAG
167581 TAA * 7 21/21 TAA TAA TAA TAA TAA TAA TAA
179294 AAT * 8 22/24 AAT AAT AAT AAT AAT AAT AAT GTT
201629 GCA * 7 19/21 GCA GCA GCA GCA GCG TCA GCA
206590 GCT * 7 19/21 GCT GCT GCT GCT GCC GCC GCT
206791 GGC * 7 19/21 GGC GGC GGC GGC GGC AGC GGT
216814 CAG * 10 27/30 CAG CAG CAG CAG CAG CAG CAG TTG CAG CTG
246347 GCT * 7 19/21 GCT GCT GCT TCT GCT GCT TCT
-----------------------------------------------------------------------------------------
Total sequence length......................... 247952
Total number of repeats detected.............. 9
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
GGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 1 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 1 TAA + 0 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 1 GCA + 2 CAG + 2 GCT + 0 CTG + 0 TGC = 5
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
1 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298648|gb|AE003665.1|AE003665 Drosophila melanogaster genomic scaffold 142000013386055 section 58 of 63, complete sequence
Position Repeat Coverage Repeat
20484 TAG * 10 28/30 TAG TAG TAG TAA TAG TAG TAG TAG TAG TTG
23015 CGA * 7 19/21 CGA TGA CGA CGA CGA TGA CGA
55973 CAG * 7 19/21 CAG CAG CAG CAG CAG CAG TTG
78161 CAG * 7 19/21 CAG CAG CAA CAA CAG CAG CAG
108925 AGT * 8 22/24 AGT AGT AGT AGT AGT AGT AGT GCT
147326 GCA * 7 20/21 GCA GCA GCA GCA GGA GCA GCA
-----------------------------------------------------------------------------------------
Total sequence length......................... 205045
Total number of repeats detected.............. 6
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TAG 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CGA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
1 AGT + 0 GTA + 1 TAG + 0 ACT + 0 CTA + 0 TAC = 2
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 1 GCA + 2 CAG + 0 GCT + 0 CTG + 0 TGC = 3
0 ACG + 1 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298621|gb|AE003664.1|AE003664 Drosophila melanogaster genomic scaffold 142000013386055 section 57 of 63, complete sequence
Position Repeat Coverage Repeat
12109 TCC * 8 22/24 TCC TCC TCC TCC TCG TCC TCC TGC
23996 TGC * 7 19/21 TGC TGT TGT TGC TGC TGC TGC
24017 TGT * 11 30/33 TGT TGT TGT TGC TGC TGT TGT TGT TGT TGT TGA
24335 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC TGA GGC
24370 CTG * 12 33/36 CTG CTG ATG CTG CTG CTG CTG CTG TTG CTG CTG CAG
60896 TCA * 8 22/24 TCA TCA TCA TCA TCA TCC TCA TCC
107855 TCA * 8 24/24 TCA TCA TCA TCA TCA TCA TCA TCA
123546 TTA * 7 21/21 TTA TTA TTA TTA TTA TTA TTA
139317 ATG * 14 38/42 ATG ACG ATG ATG AAG ATG ATG ATG ATG ATG ATG ATG ATC GTG
155196 CAG * 11 30/33 CAG CAG GAG CAG CAG CAG CAG CAG CAG CAA CAA
193456 AAC * 9 25/27 AAC AAC AAC AAT AAC AAC AAC AAT AAC
219606 GTT * 7 19/21 GTT GTC GTT GTC GTT GTT GTT
220378 GCA * 8 22/24 GCA ACA GCA GCA GCA GCA GCA ACA
-----------------------------------------------------------------------------------------
Total sequence length......................... 266340
Total number of repeats detected.............. 13
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 0 0 1 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TCA 2 2 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 0 1 0 0 0 0 0 0 0 0 0 0
CTG 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 0 CAA + 1 GTT + 0 TTG + 1 TGT = 3
1 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 2 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 1 TCC = 1
0 AGC + 1 GCA + 1 CAG + 0 GCT + 1 CTG + 2 TGC = 5
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298582|gb|AE003663.1|AE003663 Drosophila melanogaster genomic scaffold 142000013386055 section 56 of 63, complete sequence
Position Repeat Coverage Repeat
363 TAT * 7 19/21 TAT AGT TAT TAT TAT TAT TAT
6328 ATC * 7 19/21 ATC AGA ATC ATC ATC ATC ATC
22514 AAC * 7 19/21 AAC AAC AAC TAC AAC TAC AAC
23893 CCG * 7 19/21 CCG CCT CCG CCG CCG CCG CAG
24920 GCA * 7 19/21 GCA GCA GCA GCA GCA GCA CCC
55099 GCA * 7 19/21 GCA GCA ACA ACA GCA GCA GCA
67798 CCT * 9 25/27 CCT CCT CCT CCT CCT CCT CCT CCG CCG
73140 CAA * 8 23/24 CAA CAA CAA GAA CAA CAA CAA CAA
129056 GAT * 7 19/21 GAT AAT GAT GAT TAT GAT GAT
130084 ACA * 7 19/21 ACA ACA GCA ACA ACA ACA ACG
132792 GAT * 7 19/21 GAT GAC GAT GAC GAT GAT GAT
150923 CAG * 10 27/30 CAG CAG CAG CAG CAG CAG CAG CAG GAG GAT
171500 CAG * 8 22/24 CAG CAG CAG CGG CAA CAG CAG CAG
193651 TGT * 10 28/30 TGT TGT TGT TGT TGT TGT TGT TAT TGC TGT
198589 GGA * 7 19/21 GGA GGA GGA GGA GGA GCT GGA
256207 TGG * 7 19/21 TGG TGA TGG TGT TGG TGG TGG
292802 ATA * 7 19/21 ATA ATA AAA ATA TTA ATA ATA
-----------------------------------------------------------------------------------------
Total sequence length......................... 299476
Total number of repeats detected.............. 17
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 0 1 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 2 2 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 1 1 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 1 ACA + 1 CAA + 0 GTT + 0 TTG + 1 TGT = 4
0 ATG + 0 TGA + 2 GAT + 0 CAT + 1 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 0 GAG + 1 CCT + 0 CTC + 0 TCC = 2
0 AGC + 2 GCA + 2 CAG + 0 GCT + 0 CTG + 0 TGC = 4
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 1 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 1 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298553|gb|AE003662.1|AE003662 Drosophila melanogaster genomic scaffold 142000013386055 section 55 of 63, complete sequence
Position Repeat Coverage Repeat
20679 TCC * 10 28/30 TCC TCC TCC TCC TGC TCC TCC TCC TCC TAC
21332 AGG * 7 19/21 AGG AGG AGG AGG AGG AGG GGT
28807 CAG * 11 31/33 CAG CAG CAG CAG CAG CAG CAG CAG CGG CAG CGG
89763 CTG * 7 20/21 CTG CTG CTG CTG CTG CTG TTG
102052 GAA * 7 20/21 GAA GAA GAA GAA GAA GAA GAG
104692 ATG * 7 19/21 ATG ATG ATG ATG ATG CTG CTG
152693 TGA * 7 19/21 TGA TGA TGA TGG AGA TGA TGA
153087 AGC * 7 19/21 AGC TGC AAC AGC AGC AGC AGC
158830 AAC * 8 22/24 AAC AAC AAC AAC AAC AAC AAC CAA
183279 CTG * 7 20/21 CTG CTG CTG CTG CTG CGG CTG
225083 TGC * 10 28/30 TGC TGC TGC TGC TGC TGC TGC TGC GCC TGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 263214
Total number of repeats detected.............. 11
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 0 1 0 0 0 0 0 0 0 0 0 0
TCC 1 0 1 0 0 0 0 0 0 0 0 0 0
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 0 1 0 0 0 0 0 0 0 0 0 0
CTG 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 1 GAA + 0 CTT + 0 TTC + 0 TCT = 1
1 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 1
1 ATG + 1 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 1 TCC = 2
1 AGC + 0 GCA + 1 CAG + 0 GCT + 2 CTG + 1 TGC = 5
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298501|gb|AE003661.1|AE003661 Drosophila melanogaster genomic scaffold 142000013386055 section 54 of 63, complete sequence
Position Repeat Coverage Repeat
8443 TGA * 7 19/21 TGA TGA TGA TGC TGA TGA TGT
15842 CAT * 7 20/21 CAT CGT CAT CAT CAT CAT CAT
49310 TTA * 7 19/21 TTA TTA TTA TTA TTA TTA TAG
71114 TGT * 8 22/24 TGT TGT TGT TGT TGT TGT TGT AGC
100433 GCT * 7 19/21 GCT GCT GCT GCT GCC GCT GCC
104300 GAC * 8 22/24 GAC GAC GAC GAC AAC GAC GAC GAT
117827 TGT * 8 22/24 TGT TGT TGT TGC TAT TGT TGT TGT
117957 CAG * 8 22/24 CAG CAA AAG CAG CAG CAG CAG CAG
132900 CAT * 7 19/21 CAT GAT CAC CAT CAT CAT CAT
170341 CTG * 7 19/21 CTG TTG CTG CTG CTG CTG CGG
170409 GCT * 7 20/21 GCT GAT GCT GCT GCT GCT GCT
196168 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC TGA TGG
202631 CTG * 9 26/27 CTG CTG CTG CTG CTG CTG CTG CTT CTG
228007 GTT * 7 19/21 GTT GAT GTT GTT GAT GTT GTT
232596 AAC * 7 20/21 AAC AAC AAC ATC AAC AAC AAC
244219 GTT * 7 19/21 GTT GTT GTT GTT GTT GCT GCT
257668 AGC * 7 19/21 AGC AAC AGC AGC AGC AAC AGC
258129 ACA * 7 19/21 ACA ACA ACA ACA ACA GCA GCA
-----------------------------------------------------------------------------------------
Total sequence length......................... 265023
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 1 ACA + 0 CAA + 2 GTT + 0 TTG + 2 TGT = 6
0 ATG + 1 TGA + 0 GAT + 2 CAT + 0 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 0 GCA + 1 CAG + 2 GCT + 2 CTG + 1 TGC = 7
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298465|gb|AE003660.1|AE003660 Drosophila melanogaster genomic scaffold 142000013386055 section 53 of 63, complete sequence
Position Repeat Coverage Repeat
10010 TCG * 7 19/21 TCG TCG TCG TCG TCA TTG TCG
18492 TTA * 7 19/21 TTA TTA TTA TTA TTA TTT TTG
37254 TGC * 12 34/36 TGC TGC TGC TGT TGC TGC TGC TGC TGC TGT TGC TGC
38061 CCT * 10 27/30 CCT CCT CCT CCT CCT CCT CCT CCG CCA CCG
43451 GCA * 21 57/63 GCA GCA GCG GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCG ACA GTT GCA ACA
48622 GTT * 10 27/30 GTT GTT GTT TTT GTT TTT GTT GTT GTT GCT
50840 TCA * 8 22/24 TCA CCA TCA TCA TCA TCA TCA CCA
55910 GCA * 7 19/21 GCA ATA GCA GCA GCA GCA GCA
63002 GCT * 12 33/36 GCT GCT GCT GCT GCT GCT GCT GCT GTT GCT GAT GTT
63836 GAT * 7 19/21 GAT GAT GAT GAT GAT GAT GCA
66011 AAC * 8 22/24 AAC AGC AAC AAC AAC AAC AAC AGC
69408 TGC * 7 20/21 TGC TGC TGC GGC TGC TGC TGC
69815 TGT * 10 27/30 TGT TGC TGT TGT TGT TGT TGT TGC TGT TGC
85018 ATA * 8 22/24 ATA ATA ATA ATA ATA ATA ATA TAA
98379 GCT * 7 19/21 GCT GCT GCT GCG GCT GCT GCC
118665 GCT * 7 19/21 GCT GCT GCT GCT GCT GCG GTT
121106 CGT * 7 19/21 CGT TGT CGT CGT CGT CGT CGG
161072 GTT * 7 19/21 GTT GTT GTT GCA GTT GTT GTT
180954 CAA * 10 27/30 CAA CAA CAA CAA CAA CAA CAA CAA CTA AGA
193524 TGC * 14 38/42 TGC TGC GGC TGC TGC TGC TGC TGC TGC TGC TGC TGC GGC GGA
193795 TGC * 7 19/21 TGC TGT TGC TGC TGC TGC TGT
207953 GTT * 7 19/21 GTT GTT GTT ATT GTT TTT GTT
207983 GCA * 10 27/30 GCA GCA GCA GCA GCA GCA GCA GCC ACA GGA
-----------------------------------------------------------------------------------------
Total sequence length......................... 231972
Total number of repeats detected.............. 23
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 4 2 1 1 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 3 2 1 0 0 0 0 0 0 0 0 0 0
GCA 3 1 1 0 0 1 0 0 0 0 0 0 0
GCT 3 2 1 0 0 0 0 0 0 0 0 0 0
CAA 1 0 1 0 0 0 0 0 0 0 0 0 0
CGT 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 1 CAA + 3 GTT + 0 TTG + 1 TGT = 6
0 ATG + 0 TGA + 1 GAT + 0 CAT + 0 ATC + 1 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 1 CCT + 0 CTC + 0 TCC = 1
0 AGC + 3 GCA + 0 CAG + 3 GCT + 0 CTG + 4 TGC = 10
0 ACG + 0 CGA + 0 GAC + 1 CGT + 0 GTC + 1 TCG = 2
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298444|gb|AE003659.1|AE003659 Drosophila melanogaster genomic scaffold 142000013386055 section 52 of 63, complete sequence
Position Repeat Coverage Repeat
4994 AAC * 8 22/24 AAC AAC AAC AGC AAC AAC AAC AAT
16596 TCA * 7 19/21 TCA TCA GCA TCA TCA TCG TCA
28464 CTT * 8 22/24 CTT CTT CTT CTT CTT TTT GTT CTT
48709 GCT * 10 28/30 GCT GCT GCT GCT GCT GCT GTT GCT GCT GCG
48777 TGC * 7 19/21 TGC TGC TGC TGC TGC TGC CGG
52693 CTG * 7 19/21 CTG CTG CTT CTG CTG CTG CGG
58808 TGC * 7 19/21 TGC TGC TGC TGC TGC TGT GGC
58994 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC AGC TGA
116266 GAT * 12 33/36 GAT GAT GAT GAT GCT GGT GAT GAT GAT GAT GCT GAT
116511 TGA * 7 19/21 TGA TGG TGA TGA TGA TGA TGG
129477 TGC * 7 19/21 TGC TGT TGC TGT TGC TGC TGC
152941 ATC * 7 19/21 ATC ATT ATT ATC ATC ATC ATC
176732 CAG * 7 19/21 CAG CAG CAT CAA CAG CAG CAG
189520 TTA * 7 19/21 TTA TTA TTA ATA TTA TTT TTA
202436 GCT * 7 19/21 GCT GCT GCT GCT GCT CCT CCT
237714 GCA * 7 19/21 GCA TCA GCC GCA GCA GCA GCA
246925 TGA * 7 19/21 TGA TGA TGA TGA TGA TGC TGC
247808 CTC * 7 19/21 CTC GGC CTC CTC CTC CTC CTC
251114 TGA * 8 22/24 TGA TGA TGA TGA TGA TGA TGA GGT
-----------------------------------------------------------------------------------------
Total sequence length......................... 260897
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 3 3 0 0 0 0 0 0 0 0 0 0 0
TGC 4 4 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 2 1 1 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 1
1 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 3 TGA + 1 GAT + 0 CAT + 1 ATC + 1 TCA = 6
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 1
0 AGC + 1 GCA + 1 CAG + 2 GCT + 1 CTG + 4 TGC = 9
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7298430|gb|AE003658.1|AE003658 Drosophila melanogaster genomic scaffo