Di-Nucleotide Repeats in Genomic Sequences
Di-Nucleotide Repeats in
Drosophila melanogaster Chromosome-Arm-2L Genomic Scaffolds
Genomic Sequence:..
gi|7316101|gb|AE002638.1|AE002638 Drosophila melanogaster genomic scaffold 142000013386046, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7296218|gb|AE003590.1|AE003590 Drosophila melanogaster genomic scaffold 142000013386046 section 16 of 16, complete sequence
Position Repeat Coverage Repeat
1729 TA * 10 18/20 TA AA TA TC TA TA TA TA TA TA
3551 AT * 12 23/24 AT AT AT AT AT AT AT AT AT AT AT AG
47554 TG * 10 18/20 TG AC TG TG TG TG TG TG TG TG
49231 TG * 11 20/22 TG CG TG TG TG TG TC TG TG TG TG
60820 TG * 10 18/20 TG TG TA TG TG TG TG TG AG TG
78288 TG * 10 18/20 TG TG TG TG TG TG CG TG TG TT
103322 AT * 13 24/26 AT CT AT AT AT AT AT AT GT AT AT AT AT
168538 AT * 12 22/24 AT GC AT AT AT AT AT AT AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 301627
Total number of repeats detected.............. 8
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 1 0 0 0 0 4 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 1 0 0 0 0 4 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 1 TA = 4
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 4 TG + 0 CA + 0 AC = 4
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7296179|gb|AE003589.1|AE003589 Drosophila melanogaster genomic scaffold 142000013386046 section 15 of 16, complete sequence
Position Repeat Coverage Repeat
14786 AG * 12 22/24 AG GG AG AG AG AG AA AG AG AG AG AG
84387 AC * 16 29/32 AC AA GC AC AC AC AC AC AC AC AC AC AC AC AC AG
89522 AT * 11 20/22 AT AT AT AC AT AT AC AT AT AT AT
90590 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA CG GA
95193 AG * 13 24/26 AG AG AA AC AG AG AG AG AG AG AG AG AG
97168 CA * 10 18/20 CA CA CA CA CA TA CA CA CT CA
99137 AC * 10 18/20 AC AC GC AC AC AC AC AA AC AC
101110 TG * 10 18/20 TG TA TA TG TG TG TG TG TG TG
101212 AG * 12 22/24 AG AG AG AG AG AG AG AG AG AG AG TT
107942 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA CA TT
110055 CT * 13 24/26 CT CT CT CT CT CT CG CT CT CT CT CT CC
121134 AG * 13 24/26 AG AG AG AG AG AG AA GG AG AG AG AG AG
121161 GA * 13 24/26 GA GA GA GA TA GG GA GA GA GA GA GA GA
124810 AG * 28 51/56 AG AG GG AG AG AG AG AG AG AG AG AG AG AG AG AG AG CG GG AG AG AG AG AG GG AG AG AA
129795 AT * 10 18/20 AT AC AT AT AC AT AT AT AT AT
141399 TG * 10 18/20 TG TG TG TG CG AG TG TG TG TG
163406 TA * 11 20/22 TA TA TA TA TT TA TT TA TA TA TA
163831 TG * 10 18/20 TG TG AG TA TG TG TG TG TG TG
198780 TA * 10 18/20 TA TA TA TA TA GT TA TA TA TA
253896 CT * 18 34/36 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT TA
260933 CT * 18 34/36 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT TA
271799 CA * 10 18/20 CA CA CA CG CA AA CA CA CA CA
293970 TG * 11 20/22 TG TG TG TA TG TG TG TA TG TG TG
299507 AT * 10 18/20 AT AT AT AT AT AT AT TT AT TT
-----------------------------------------------------------------------------------------
Total sequence length......................... 302473
Total number of repeats detected.............. 24
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 2 4 1 1 4 4 0 0 1 0 0
15 to 19 0 0 0 0 1 0 0 0 0 2 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 1 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 2 5 1 2 4 4 0 0 3 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 2 TA = 5
5 AG + 1 GA + 3 CT + 0 TC = 9
0 GT + 4 TG + 4 CA + 2 AC = 10
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7296139|gb|AE003588.1|AE003588 Drosophila melanogaster genomic scaffold 142000013386046 section 14 of 16, complete sequence
Position Repeat Coverage Repeat
17553 TG * 10 18/20 TG TG TG TG TG TG TG TG TG CC
25132 CA * 16 29/32 CA CA CA CA CA CA CA CA CA CA CA CC CA CA CA TG
51853 TC * 12 22/24 TC TC TT TC TC TC CC TC TC TC TC TC
78989 AT * 13 24/26 AT AT AT AT AT AT AT AT AT AT AT AT CC
93707 AG * 10 18/20 AG AG AG AG AG AG AG AG AG CC
94073 GT * 10 18/20 GT GA GT GT GT GT GT GT GA GT
151017 TG * 11 20/22 TG TG TA TG TG TG TG TG TG TG AG
151041 TG * 10 18/20 TG TG TG TG TG CG TG TG TC TG
167356 AT * 11 20/22 AT AT GT AT AT AT AT GT AT AT AT
217929 TC * 12 23/24 TC TC TC TC TC TC TC TC TC TC TC TG
218173 TC * 11 20/22 TC TC TC TT TC TC TC TC TC TC CC
225880 AG * 10 19/20 AG AG AG AG AG GG AG AG AG AG
251756 TA * 10 18/20 TA TA TA TA TT TA TA TA TA TT
252242 CA * 12 23/24 CA CA CA CA CA CA CA CA CA CA CA TA
276588 AT * 11 20/22 AT AT AT AT AC AA AT AT AT AT AT
291117 CT * 11 21/22 CT CT CT CT CT CT CT CT CT CT CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 299378
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 1 2 0 0 1 3 1 3 1 0 0
15 to 19 0 0 0 0 0 1 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 1 2 0 0 2 3 1 3 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 1 TA = 4
2 AG + 0 GA + 1 CT + 3 TC = 6
1 GT + 3 TG + 2 CA + 0 AC = 6
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7296095|gb|AE003587.1|AE003587 Drosophila melanogaster genomic scaffold 142000013386046 section 13 of 16, complete sequence
Position Repeat Coverage Repeat
7414 AG * 10 18/20 AG AG AG AG AG AG AG AG AG CT
13695 AG * 10 18/20 AG AG AG AG AG AG AG AG AG CT
16822 AC * 10 18/20 AC TC AC AC AC AC TC AC AC AC
21610 AC * 14 26/28 AC AC AC AC AC AC AC AC AC AC AC AC TC AA
47498 CA * 10 19/20 CA CA CA CA CA CA CA CA CA CT
93344 TA * 12 23/24 TA TA TT TA TA TA TA TA TA TA TA TA
96874 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA CA TG
105406 CA * 10 18/20 CA AA CA CA CA CT CA CA CA CA
117026 AT * 10 18/20 AT AT AT AC AT AT GT AT AT AT
119315 AT * 11 20/22 AT AT AC AT AA AT AT AT AT AT AT
144230 CA * 10 19/20 CA CA CA CA CA CA CA CA CA CC
150657 AT * 11 20/22 AT AC AT AT AT AT AT AC AT AT AT
159461 AC * 11 20/22 AC GC AT AC AC AC AC AC AC AC AC
179682 AT * 12 22/24 AT AT AT AT AT AT AT AT AT TT GT AT
185795 CA * 15 28/30 CA CA CA CA CA CA CA CA CA CA CG CG CA CA CA
186757 CA * 11 20/22 CA CC CA CA CA CA CG CA CA CA CA
210981 TG * 13 24/26 TG CG AG TG TG TG TG TG TG TG TG TG TG
222563 AT * 10 18/20 AT AT AT AT AT AT AT AT GT AA
224224 TA * 13 24/26 TA CA TA TA TA TA CA TA TA TA TA TA TA
226145 CT * 10 18/20 CT CT CT CT CT CT CT CT CC CC
244471 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CA TT
251415 TA * 10 18/20 TA TA TG TA TT TA TA TA TA TA
260897 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA GA CA CT
268355 GT * 12 22/24 GT GT GC GT GT GT GT GT GT GT GT GC
271623 TA * 10 18/20 TA TA TA TA TA TA TA TA TA GT
283218 AC * 11 20/22 AC AC AC AC AC TC AC AC AC AC AT
283880 CA * 10 18/20 CA CA CA CA CA CA CA CG CA AA
284327 TG * 10 18/20 TG TG TG TG TG TG TG TG TG CC
284398 GT * 10 18/20 GT TT GT GT CT GT GT GT GT GT
287659 TG * 17 31/34 TG TG CG TA TG TG TG TG TG TG TG TG TG TG TG CG TG
288276 CA * 12 22/24 CA CA CA CA CA CA CA CA TA CA CA TA
289576 CA * 11 20/22 CA CA CA AA CG CA CA CA CA CA CA
289632 GT * 10 18/20 GT CA GT GT GT GT GT GT GT GT
293085 TG * 10 18/20 TG TG TG TG TG TG TG TA TT TG
293915 CT * 15 28/30 CT CC CT CT CT CT CT CT CT CA CT CT CT CT CT
300465 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA TG CA
306535 CA * 15 27/30 CA CA GA CA CA CA CA CA CA CA CA CA CA CG CG
-----------------------------------------------------------------------------------------
Total sequence length......................... 309388
Total number of repeats detected.............. 37
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 4 2 0 4 11 3 3 0 1 0 0
15 to 19 0 0 0 0 0 2 1 0 0 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 4 2 0 4 13 4 3 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 4 TA = 9
2 AG + 0 GA + 2 CT + 0 TC = 4
3 GT + 4 TG + 13 CA + 4 AC = 24
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7296066|gb|AE003586.1|AE003586 Drosophila melanogaster genomic scaffold 142000013386046 section 12 of 16, complete sequence
Position Repeat Coverage Repeat
2382 TG * 12 22/24 TG TG CG AG TG TG TG TG TG TG TG TG
9285 GT * 10 18/20 GT AC GT GT GT GT GT GT GT GT
73471 CA * 17 32/34 CA CA CA CA CA CA CA CA CG CA CA CA CA CT CA CA CA
129502 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA CA AC
135351 TA * 15 28/30 TA TA TA TA TA TA TA TA TA TA TA TA TA CA TT
141737 CT * 10 18/20 CT CT CT CT CG CT CT CC CT CT
155204 TG * 10 18/20 TG TG TG TG TG TG TG TG TG CT
194645 GT * 11 20/22 GT GT GT GT GT GT GT GT GT GT TC
197077 TC * 11 20/22 TC CC TC TC TC TC TC TC TC TA TC
199116 CT * 12 22/24 CT CT CT CT GT CA CT CT CT CT CT CT
199629 TA * 13 24/26 TA AT TA TA TA TA TA TA TA TA TA TA TA
200260 GA * 12 22/24 GA AA GA GA GA GA GA GA GA GA GA AA
204247 CA * 11 20/22 CA CT CA CA CA CA CT CA CA CA CA
208954 AG * 11 20/22 AG AG GG AG AG AT AG AG AG AG AG
213523 CA * 11 20/22 CA CA CA CA CA CA CA CA CA TA GA
215247 CA * 11 20/22 CA CA CA CA CG CA AA CA CA CA CA
221885 GT * 10 18/20 GT GT GT GT GT GT GT GT GC TT
222794 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TT TA
239931 CA * 11 20/22 CA CA CT CG CA CA CA CA CA CA CA
241126 GT * 10 18/20 GT CT AT GT GT GT GT GT GT GT
261256 TG * 16 29/32 TG TG TG TG TG TT TG TG TG TG TG TG TG TG TG GC
262821 TG * 18 33/36 TG TG TC TC TG TG TG TG TG TG TG TG TG TG TG TG TG CG
270347 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TA TA
284280 CA * 11 20/22 CA CA CA CA CA CA CA AA TA CA CA
292392 CA * 11 20/22 CA CA CA CA CA CA CA CA CG CA TA
293789 CA * 11 20/22 CA CA CA CA CA CA CA CA CG CA CT
293841 AC * 10 18/20 AC AC AC AC AC AC AC AC AG GC
297029 TG * 11 20/22 TG TA AG TG TG TG TG TG TG TG TG
304177 CA * 15 27/30 CA CA CA CA CA CA CA CA CA CA CC TA CA CA CT
-----------------------------------------------------------------------------------------
Total sequence length......................... 306352
Total number of repeats detected.............. 29
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 1 1 1 1 8 5 4 1 2 0 0
15 to 19 0 1 0 0 0 2 2 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 2 1 1 1 10 7 4 1 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 2 TA = 2
1 AG + 1 GA + 2 CT + 1 TC = 5
4 GT + 7 TG + 10 CA + 1 AC = 22
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7296031|gb|AE003585.1|AE003585 Drosophila melanogaster genomic scaffold 142000013386046 section 11 of 16, complete sequence
Position Repeat Coverage Repeat
2879 AT * 10 19/20 AT AT AT AT AT AT AT AT AT TT
5233 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AC AC TT
9004 TC * 11 20/22 TC TC CC TC TC TC TC TC TC TC GC
10458 AC * 11 20/22 AC AA AC AC AC AC AC AC AC AC CC
16288 TG * 13 24/26 TG TG TG TG TG TA TG TG TG TG TG GG TG
18154 CA * 17 31/34 CA CG CG CA CA CA CA CA CA CA CA CA CA CA CG CA CA
34374 TG * 11 20/22 TG TG TG TG TG TG TA TG TG TG TT
34485 CA * 10 18/20 CA CA CA CA CA CA CA CA TG CA
41426 AC * 16 29/32 AC AC TC CC AC AC AC AC AC AC AC AC AC AC AC AA
56163 CA * 11 20/22 CA CA CA CA CA CA CA AA CA CA GA
56586 AC * 10 18/20 AC AC AC AC AA AA AC AC AC AC
97527 TA * 15 28/30 TA TA TA TA TA TA TA TA TA TA AG TA TA TA TA
109293 CT * 10 18/20 CT CT CG CT CT CT CT CT CT CG
125137 AT * 12 22/24 AT AT AT AT AT AT AT AT AT TT AT AC
130140 TA * 12 22/24 TA AA TA TA TA TA TA TA TA GA TA TA
142990 GT * 10 18/20 GT AT GT GT GT GT GT GT GT TT
153038 TA * 10 18/20 TA CA TA TA TA TA TA TA TA TT
153783 CA * 11 21/22 CA CA CA CA CA CA CA CA CA CA CT
155347 AC * 15 27/30 AC AG AC AC AC AC AC AC AC AC AC AC AC AA AT
160468 AG * 10 18/20 AG AG AG AG AG AG AG AG AG CT
168472 AG * 10 18/20 AG AG AG AG AG AG AG AG AG CT
175570 GT * 12 22/24 GT AT GT GT GT GC GT GT GT GT GT GT
182143 TG * 10 18/20 TG TG TG TG TG TG TG TG CG TA
182689 AT * 13 25/26 AT AT AT AT AT AC AT AT AT AT AT AT AT
184355 CT * 13 25/26 CT CT CT CT CT CT CT CT CT CT CT CG CT
186471 AT * 10 19/20 AT AT AT AT AT AT AT GT AT AT
189331 CT * 11 20/22 CT CT CT CT CG CT CT CT CA CT CT
193461 GT * 10 18/20 GT TT GT GT GT GT GT GT GC GT
195517 CA * 17 32/34 CA CA CA CA CA CA CA CA CA CA CA CA TA AA CA CA CA
196490 AG * 11 20/22 AG AG AG AG AG AG AA AG AG AG CG
196804 CT * 10 18/20 CT CT TT CT CT CA CT CT CT CT
197651 TC * 12 23/24 TC TC TC TC TC TC TC TC TC TC TC TG
198564 TG * 10 18/20 TG TG TG TG TG TG CT TG TG TG
198755 CT * 12 22/24 CT GT CT CA CT CT CT CT CT CT CT CT
198780 TC * 11 20/22 TC TC TC TC TC TC TC TC TA CC TC
206832 AT * 11 20/22 AT AT AT AT AT AT AT AT AT CT GT
211097 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TT GG TG
211952 TG * 10 19/20 TG TG TG TG TG TG TG TG TG AG
212840 AT * 12 22/24 AT AT AT AT AT AT AC AT AT AC AT AT
212866 AT * 17 31/34 AT AT AT AT AT AT AC AT AT AT AT AC AT AT AC AT AT
218140 CA * 11 21/22 CA AA CA CA CA CA CA CA CA CA CA
220447 AC * 15 27/30 AC AC AC AC AC AC AA AC AC AC AC AC AG AC AG
220754 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT GT AC
229665 AG * 11 20/22 AG CG AG AG CG AG AG AG AG AG AG
257431 TG * 10 18/20 TG AG TG TG TG TG TG TG TG CG
272393 GT * 10 18/20 GT GT GT GT GT GT GT GC TT GT
289294 AT * 32 59/64 AT GT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT AT AT AT TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 306573
Total number of repeats detected.............. 47
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 6 2 4 0 3 4 7 5 3 5 0 0
15 to 19 1 1 0 0 3 2 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 1 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 8 3 4 0 6 6 7 5 3 5 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
8 AT + 3 TA = 11
4 AG + 0 GA + 5 CT + 3 TC = 12
5 GT + 7 TG + 6 CA + 6 AC = 24
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295986|gb|AE003584.1|AE003584 Drosophila melanogaster genomic scaffold 142000013386046 section 10 of 16, complete sequence
Position Repeat Coverage Repeat
3740 GA * 11 20/22 GA GA GC GA CA GA GA GA GA GA GA
4232 GT * 10 18/20 GT GT GT GT GT GT GT CT GT TT
55413 TG * 17 31/34 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG AG GC
85826 AT * 12 22/24 AT AT AT AT CT AT AT AT AT AT AA AT
103590 GT * 10 18/20 GT GA GT GT GT GT GT GT TT GT
108058 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AT TC
109756 GT * 13 24/26 GT GT GT GT GT GT GT GT GC GT GT GT GC
118941 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
118965 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
118989 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
119013 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
119037 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
119061 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
119085 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
119109 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
119150 TA * 11 20/22 TA TA TA CA TA TA TA CA TA TA TA
119189 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
119213 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
119253 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
119277 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
119301 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
119325 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
132299 TG * 13 24/26 TG TA TG TG TG TG TG TG TG TG TG TG TA
135044 AC * 10 18/20 AC AC AC TC AC AC AC TC AC AC
136506 CA * 14 26/28 CA CA CA CA CA CA CA TA CA CA TA CA CA CA
145674 AG * 10 18/20 AG AG AG AG AG AG AG AG AG GT
147482 GT * 10 18/20 GT GT TT GT CT GT GT GT GT GT
151028 GT * 12 22/24 GT GT GT GT GT GT GT GC GT AT GT GT
156655 AT * 12 22/24 AT AT AT AT AT AT AT AT AT AT AT GA
160378 CA * 11 20/22 CA CC CA CA CA CA CA CA CA CA CT
163719 CA * 11 20/22 CA CA CA CC CA CA CA CC CA CA CA
170765 TG * 11 20/22 TG TG TG TG TG CG TG TG TC TG TG
171953 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AC TT
178653 AT * 10 18/20 AT AT AT AT AT AT AT AT TT AA
184761 GT * 11 20/22 GT GT GT GT GT TT GT GT GT GT GC
202951 CA * 13 25/26 CA CA CA CC CA CA CA CA CA CA CA CA CA
207260 TG * 12 22/24 TG TG TG TG AG TG TG TG TG TG TG AG
208800 TG * 10 18/20 TG TG TG TG TG TG TG TG CG AG
208905 AG * 10 18/20 AG AG AA AG AG AG TG AG AG AG
233009 GT * 15 27/30 GT GA GT GT GT GT GT GT GT GT GA GT GT GT TT
247192 CA * 25 46/50 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CC CA CA CA CA CA GA TG
318707 TA * 10 19/20 TA TA TA TA TA TA TA TT TA TA
318975 AT * 11 20/22 AT AT AC AT AT AT AT AT AT AT TT
-----------------------------------------------------------------------------------------
Total sequence length......................... 324484
Total number of repeats detected.............. 43
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 19 2 2 1 2 4 4 6 0 0 0 0
15 to 19 0 0 0 0 0 0 1 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 1 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 19 2 2 1 2 5 5 7 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
19 AT + 2 TA = 21
2 AG + 1 GA + 0 CT + 0 TC = 3
7 GT + 5 TG + 5 CA + 2 AC = 19
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295946|gb|AE003583.1|AE003583 Drosophila melanogaster genomic scaffold 142000013386046 section 9 of 16, complete sequence
Position Repeat Coverage Repeat
3611 TG * 15 27/30 TG AG TG TG TG TG TG TG TG TG TG TG TT TG GG
4268 AC * 11 21/22 AC AC AC AC AC AC AC AC AC AC TC
5141 AC * 10 18/20 AC AG AC TC AC AC AC AC AC AC
7099 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG AG TC
7779 GT * 15 27/30 GT GT GT GC GA GT GT GT GT GT GT GT GT GT TT
10321 GT * 12 22/24 GT AT AT GT GT GT GT GT GT GT GT GT
24256 GT * 13 24/26 GT GT AT CT GT GT GT GT GT GT GT GT GT
27250 CA * 11 20/22 CA CA CA CA CT CA CA CA CA CC CA
28391 AT * 10 18/20 AT AT GT AT AT TT AT AT AT AT
73711 TG * 10 18/20 TG TG TG TG TG TG TG TG TG GC
84751 GT * 11 20/22 GT GT GT GT GC GT GT GT AT GT GT
101598 AT * 12 22/24 AT AT AT AT TT AT AT AA AT AT AT AT
106663 GT * 13 24/26 GT AT GT GT GT GT GT GT GT GT GT GT GC
121660 TA * 10 18/20 TA TT TA TA TA TA TA TG TA TA
129423 CA * 10 18/20 CA CC CA CA CC CA CA CA CA CA
175560 TA * 12 22/24 TA TA TA CT TA TA TA TA TA TA TA TA
191132 GT * 12 22/24 GT GT GA GT GA GT GT GT GT GT GT GT
214703 AC * 15 28/30 AC AC AC AC AC AC AC AC AC AC AC AC AC AC CA
218824 CA * 12 22/24 CA CA AA CA CA CA GA CA CA CA CA CA
233606 GT * 10 18/20 GT GT TT GT TT GT GT GT GT GT
246023 AT * 11 20/22 AT AC AT AT AT AC AT AT AT AT AT
255010 GT * 10 18/20 GT GT GT TT GT GT GT GT GT GA
258456 TG * 13 24/26 TG TG TG TG GG TG GG TG TG TG TG TG TG
258646 GT * 11 21/22 GT GT GT GT GT GT GT TT GT GT GT
259212 CA * 10 18/20 CA CA CA CA CA CA CA CG CA TA
260574 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG TG CT
261345 AT * 11 20/22 AT AT AT AT TT AT AT AT AT AT GT
266819 CA * 10 18/20 CA CA CA CA CA CA CA CT GA CA
292188 CT * 17 31/34 CT CG CT CA CT CT CT CT CT CT CT CT CT CT CT CT CC
-----------------------------------------------------------------------------------------
Total sequence length......................... 303356
Total number of repeats detected.............. 29
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 2 0 0 2 5 4 8 0 0 0 0
15 to 19 0 0 0 0 1 0 1 1 0 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 2 0 0 3 5 5 9 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 2 TA = 6
0 AG + 0 GA + 1 CT + 0 TC = 1
9 GT + 5 TG + 5 CA + 3 AC = 22
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295900|gb|AE003582.1|AE003582 Drosophila melanogaster genomic scaffold 142000013386046 section 8 of 16, complete sequence
Position Repeat Coverage Repeat
438 TG * 15 27/30 TG TG TG TG AG TG TG TG TG TG TG TG TG TG GT
25245 GA * 11 20/22 GA CA GA GA GA GA GA GA GG GA GA
31098 CT * 12 22/24 CT CC CA CT CT CT CT CT CT CT CT CT
31187 AC * 10 18/20 AC AC AC AG AC AC AC AC AC AA
31282 CT * 11 20/22 CT CT CT CA CT CA CT CT CT CT CT
31307 TC * 12 22/24 TC TC TC TC TC TC TC TC TC TT CC TC
32666 AG * 12 23/24 AG AA AG AG AG AG AG AG AG AG AG AG
36021 AT * 13 24/26 AT AT AT AT GT AT AT AT AT AT GT AT AT
39839 CA * 10 18/20 CA AA TA CA CA CA CA CA CA CA
41880 AT * 15 27/30 AT AT AA AC AT AT AT AT AT AT AT AT AT AT AA
44989 TA * 12 22/24 TA TA TA TA TA TA TA TA TC CA TA TA
49431 CA * 16 29/32 CA CA CA CA CA CA CA CA CA CC CA CA AA CA CA TA
51074 AT * 10 19/20 AT AT AT AT AT AT AT AT AT AG
56792 AC * 14 26/28 AC AC AC AC AC AC AC AC CC AC AC AC AC TC
74878 GA * 11 21/22 GA GA GA GA GA GA GA GC GA GA GA
93735 AC * 10 18/20 AC GC GC AC AC AC AC AC AC AC
99153 AT * 10 18/20 AT AT AT AT GT AT AT AT AT AA
100965 GT * 11 20/22 GT GT GT GT GT GC GT GC GT GT GT
109075 TG * 11 21/22 TG TG TG TG TG TG TG TT TG TG TG
109203 GT * 13 25/26 GT GT GT GT GT GT GT GT GT GT GT GT GA
119795 CA * 10 18/20 CA CA CA CA CA CA CA CA CT GA
124481 AG * 16 29/32 AG AG AA AG AG AC AG AG AG AG AG AG AG AG AA AG
128245 TC * 13 24/26 TC CC TC TC TC TC GC TC TC TC TC TC TC
135366 CA * 11 21/22 CA CA CA CA CA CA CA CA AA CA CA
138164 TG * 13 24/26 TG TG TG TG TG TG TG TG AG TG TG TG TT
140185 CA * 17 31/34 CA CA CA CA CA CA TA CA CA CA CA CA CA CA CT CA CG
141825 TG * 11 21/22 TG CG TG TG TG TG TG TG TG TG TG
148914 AT * 17 31/34 AT AC AT AT AT AT AT AT AT AT AT AT AT AT AA AT GT
169071 AC * 11 20/22 AC AA AC AC AC AC TC AC AC AC AC
184267 TC * 10 18/20 TC GC TC TC TC TC TC TC TC TT
199025 AC * 10 18/20 AC AC TC AC AC AC AC AC AC AA
209685 TG * 11 20/22 TG AG TG TG TG TG TG TG TG TG GG
213616 AC * 10 18/20 AC AC GC AC AC AC CC AC AC AC
217506 CA * 10 18/20 CA AA CA CA CA CA CG CA CA CA
226692 TA * 13 24/26 TA TA TA TA TA TG TA TA TA TG TA TA TA
239358 TG * 11 20/22 TG TG TG TG TG TG TG TG TG GC TG
263681 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
263705 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
263729 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
263753 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
263777 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
263801 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
263825 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
263849 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
263873 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
263906 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
263930 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
263954 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
267252 GT * 12 22/24 GT GT GT GT GT GT GT GT GT AA GT GT
274569 AC * 11 21/22 AC AC TC AC AC AC AC AC AC AC AC
285003 GT * 10 18/20 GT GT GT GT GG GT AT GT GT GT
287143 TG * 13 24/26 TG GT TG TG TG TG TG TG TG TG TG TG TG
287528 CA * 10 18/20 CA CA CC CA CT CA CA CA CA CA
291836 CA * 11 20/22 CA CA CT CA CA GA CA CA CA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 295312
Total number of repeats detected.............. 54
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 15 2 1 2 7 6 6 4 3 2 0 0
15 to 19 2 0 1 0 0 2 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 17 2 2 2 7 8 7 4 3 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
17 AT + 2 TA = 19
2 AG + 2 GA + 2 CT + 3 TC = 9
4 GT + 7 TG + 8 CA + 7 AC = 26
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295843|gb|AE003581.1|AE003581 Drosophila melanogaster genomic scaffold 142000013386046 section 7 of 16, complete sequence
Position Repeat Coverage Repeat
24395 AT * 10 18/20 AT AT GT AT AT GT AT AT AT AT
25411 TA * 12 22/24 TA CA TA TA TG TA TA TA TA TA TA TA
55439 AT * 11 20/22 AT AA AT AT AT AT AT AT CT AT AT
77982 AC * 14 26/28 AC AT AC AC AC AC AC AC AC AC AG AC AC AC
157151 TA * 15 27/30 TA TA TA TA TA TA TA TA TA TA TA TC AA TA AA
171508 TC * 10 18/20 TC TC TC TC TC TC TC TG AC TC
178330 CA * 11 20/22 CA GA CA CA CA CA CA CA CA CG CA
178456 GA * 11 20/22 GA GA GA CA GA GA GA GA GA GC GA
179152 TG * 10 18/20 TG TG TG CT TG TG TG TG TG TG
182686 TA * 12 22/24 TA TA TA TA TA AA AA TA TA TA TA TA
191555 GT * 14 26/28 GT GT GT GT GT TT GT GT GT GT GT GT GA GT
195293 TG * 11 20/22 TG CG AG TG TG TG TG TG TG TG TG
199675 GA * 10 19/20 GA TA GA GA GA GA GA GA GA GA
210547 GT * 12 23/24 GT GT GT GT GT GT GT GT AT GT GT GT
214061 CT * 10 18/20 CT CT TT CT CT CT CT CT CT TT
236332 CT * 12 22/24 CT CT CT CG CT CA CT CT CT CT CT CT
237745 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TG TG TG TG TA GA
242171 CA * 11 20/22 CA CA AA CA CA CA CA CA CA CA CG
243563 AT * 12 22/24 AT AT CT AT AT AT AT AC AT AT AT AT
249680 AC * 11 20/22 AC CC AA AC AC AC AC AC AC AC AC
252833 TA * 10 18/20 TA TA GA TA TA GA TA TA TA TA
285090 AT * 11 20/22 AT TT CT AT AT AT AT AT AT AT AT
287375 AT * 14 26/28 AT AT AT AT AT AC AT AT AT AT AT AT AT AC
290713 AT * 10 18/20 AT TT AT AT AT GT AT AT AT AT
303867 AT * 10 18/20 AT TG AT AT AT AT AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 306436
Total number of repeats detected.............. 25
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 7 3 0 2 2 2 2 2 1 2 0 0
15 to 19 0 1 0 0 0 0 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 7 4 0 2 2 2 3 2 1 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
7 AT + 4 TA = 11
0 AG + 2 GA + 2 CT + 1 TC = 5
2 GT + 3 TG + 2 CA + 2 AC = 9
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295809|gb|AE003580.1|AE003580 Drosophila melanogaster genomic scaffold 142000013386046 section 6 of 16, complete sequence
Position Repeat Coverage Repeat
6790 AC * 12 22/24 AC CC AC AC AC AC AC AC AC AC AC AT
7456 TG * 10 18/20 TG CG TA TG TG TG TG TG TG TG
9974 TA * 12 23/24 TA TA AA TA TA TA TA TA TA TA TA TA
11228 AT * 11 20/22 AT AT AT AA AA AT AT AT AT AT AT
30193 GT * 11 20/22 GT AT GT GT GT GT GT GT GT GT GA
80169 CA * 18 34/36 CA CA CG CA CG CA CA CA CA CA CA CA CA CA CA CA CA CA
89018 AG * 10 18/20 AG AA AG AG AT AG AG AG AG AG
90232 CA * 10 19/20 CA CA CA CA CA CA CA CA CA CG
92488 TG * 10 18/20 TG CC TG TG TG TG TG TG TG TG
96054 AT * 10 18/20 AT AT CT AT AT AT GT AT AT AT
96407 AG * 16 29/32 AG AG AG AG AG AG AG AA AG AG AG AG AG AG AG CA
126116 TA * 11 20/22 TA TA TA TG TA TA TA TA CA TA TA
136560 CA * 10 18/20 CA CA CA CA CT CA AA CA CA CA
147708 CA * 10 18/20 CA CA CA CA CA CA CA TA TA CA
179984 TA * 10 18/20 TA TA TA TA TG TG TA TA TA TA
183111 AT * 12 22/24 AT AT AT AT AT AC AT AT AT AC AT AT
193123 CA * 10 19/20 CA CA TA CA CA CA CA CA CA CA
214958 GA * 18 33/36 GA AA GA GA GA GA GA GA GA GA GA GA GA GA GA GT GA AA
230049 TG * 11 20/22 TG TG CG TG TG TG TG TG TG TG TT
233228 CA * 11 20/22 CA CA CA CA CA CA CA CG CA CG CA
252516 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CG AA
253941 CA * 10 18/20 CA CA CA CA CC CG CA CA CA CA
279937 TG * 10 18/20 TG TC CG TG TG TG TG TG TG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 295223
Total number of repeats detected.............. 23
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 3 1 0 1 7 4 1 0 0 0 0
15 to 19 0 0 1 1 0 1 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 3 2 1 1 8 4 1 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 3 TA = 6
2 AG + 1 GA + 0 CT + 0 TC = 3
1 GT + 4 TG + 8 CA + 1 AC = 14
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295765|gb|AE003579.1|AE003579 Drosophila melanogaster genomic scaffold 142000013386046 section 5 of 16, complete sequence
Position Repeat Coverage Repeat
6323 AG * 11 20/22 AG AC AG AT AG AG AG AG AG AG AG
7270 TA * 11 20/22 TA TA TA TA TA AA TG TA TA TA TA
7675 AT * 10 19/20 AT AT AT GT AT AT AT AT AT AT
48416 GT * 11 21/22 GT GT GT GT AT GT GT GT GT GT GT
53213 TG * 11 21/22 TG TG TG TG TG TG TG TG TG AG TG
55958 AT * 10 18/20 AT AC AT AT AT AT GT AT AT AT
80705 CT * 10 18/20 CT CT CT CT CA CT CT CT CT CC
92496 TC * 10 19/20 TC TC TC TC TC TC TC TC TC TG
98948 TA * 10 18/20 TA CA GA TA TA TA TA TA TA TA
103647 CA * 12 22/24 CA GA CA CA CA TA CA CA CA CA CA CA
131329 AC * 10 19/20 AC AC AC AC AC AC AC AC AC AA
140278 AT * 11 20/22 AT TT AT AT AT AT AT AT AT GT AT
141647 CT * 16 29/32 CT CT CT CA CT CT CT CT CT CT CT CT CT AT CT GT
189196 TA * 10 18/20 TA TA TA TA TT TA TA TA TA TG
202138 AG * 10 18/20 AG AG TA AG AG AG AG AG AG AG
203011 TG * 12 22/24 TG TG TG TG TG AG TG TG TG TG TT TG
284028 AT * 10 18/20 AT AT AT AT AT AT AA AT AC AT
291883 AT * 11 20/22 AT AT AC AT AT AT AT AC AT AT AT
295985 TG * 16 30/32 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG GA
-----------------------------------------------------------------------------------------
Total sequence length......................... 304383
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 3 2 0 1 1 2 1 1 1 0 0
15 to 19 0 0 0 0 0 0 1 0 0 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 3 2 0 1 1 3 1 1 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 3 TA = 8
2 AG + 0 GA + 2 CT + 1 TC = 5
1 GT + 3 TG + 1 CA + 1 AC = 6
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295742|gb|AE003578.1|AE003578 Drosophila melanogaster genomic scaffold 142000013386046 section 4 of 16, complete sequence
Position Repeat Coverage Repeat
348 GT * 11 20/22 GT GT GT GT GT GT GT GT GG GC GT
1987 AT * 10 18/20 AT AT AT AC AT AT AT GT AT AT
6927 TA * 10 18/20 TA TA TA TA TA TA TA AA TA AA
9153 GT * 11 20/22 GT GT GC GA GT GT GT GT GT GT GT
15040 GA * 11 20/22 GA GA AA GA GA GA CA GA GA GA GA
23654 CA * 17 31/34 CA CG CA CA CA CA CA CA CA CA CA CG CA CA CA CA CT
44811 TG * 17 31/34 TG TA TG TA TG TG TG TG TG TG TG TG TG TG TG TG GG
58517 GT * 16 29/32 GT GT GT GT GT GT GT GT GT GT GT GT GT GC GG TT
65963 TG * 10 18/20 TG CG TG CG TG TG TG TG TG TG
89114 CA * 10 19/20 CA CA CA CA CA CA CA TA CA CA
90942 TA * 20 36/40 TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TG TA TA TG TG
93185 CA * 16 29/32 CA CA CA CA CA CA CA CA CA CA CA CA CT TA CA AA
99745 TA * 13 24/26 TA TA GA AA TA TA TA TA TA TA TA TA TA
105975 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GT GA GT GG
115661 AT * 10 18/20 AT AT AT GT TT AT AT AT AT AT
118407 TG * 15 28/30 TG TG TG TG TG TG TG TG TG CG TG TG TG GG TG
122503 AC * 18 34/36 AC AC GC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AA
128915 CA * 12 22/24 CA CA CA CT CA CA CA CA CG CA CA CA
133519 CA * 16 30/32 CA CA CA CA CA CA CA CA CA CA CA CA CA CG AA CA
134347 CA * 12 22/24 CA CA CA CA CA CA CA CA CA AA TA CA
144255 GT * 17 31/34 GT TT GT GT GT GT GT GT GT GT GT GT GT GT GT GC GA
148503 AT * 16 30/32 AT AT AC AT GT AT AT AT AT AT AT AT AT AT AT AT
153579 AC * 11 20/22 AC AC AC AC AC AC CC AC AC AC AT
155135 TC * 11 20/22 TC TC TC TC TC TC TC TC TC TA TA
164064 AT * 10 18/20 AT AT AT AT AT GT AC AT AT AT
166903 TA * 11 20/22 TA GA TA TA TT TA TA TA TA TA TA
203862 AT * 12 22/24 AT AT AT AT AT AT AT AT AT AT AT GG
254307 AG * 17 31/34 AG AG AG AG CG AG AG AG AG AG AG AG AG AG GG GG AG
265265 AC * 10 19/20 AC AC AC AC AC AC AC AC AC AG
267642 AC * 11 20/22 AC AA AC AC AC AC AG AC AC AC AC
272192 CA * 11 20/22 CA CT CA CA CA CA CA CA CA CA CT
274774 AT * 11 21/22 AT AT AT AT TT AT AT AT AT AT AT
275513 TA * 16 29/32 TA TA TA TA TA TA TA TA TG TG TA TA TA TA TG TA
277921 TC * 10 18/20 TC TC TC TC TT TC TC TC TC TA
286232 CA * 12 23/24 CA AA CA CA CA CA CA CA CA CA CA CA
286267 TA * 11 20/22 TA TA TA TA TA TA TA TA TA TC CA
305143 AT * 18 33/36 AT AT TT AT AT AT AT AT AT AT AT AT AT AT GT AT TT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 307748
Total number of repeats detected.............. 37
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 4 0 1 3 5 1 3 2 0 0 0
15 to 19 2 1 1 0 1 3 2 2 0 0 0 0
20 to 24 0 1 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 7 6 1 1 4 8 3 5 2 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
7 AT + 6 TA = 13
1 AG + 1 GA + 0 CT + 2 TC = 4
5 GT + 3 TG + 8 CA + 4 AC = 20
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295725|gb|AE003577.1|AE003577 Drosophila melanogaster genomic scaffold 142000013386046 section 3 of 16, complete sequence
Position Repeat Coverage Repeat
1271 GT * 11 21/22 GT GT GT GT GT GT GT GT GT GT GA
9178 TG * 14 26/28 TG CG AG TG TG TG TG TG TG TG TG TG TG TG
10059 AG * 18 33/36 AG AG AC AG AG AG AG AG AG AG AG AG AC AG AG AG AG GG
18007 AC * 10 18/20 AC AC AC AT AC AC AC AC GC AC
18720 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TG TG TG AG TG CC
28356 CA * 13 24/26 CA CA CA AA CA CA CG CA CA CA CA CA CA
28595 GA * 12 22/24 GA GA GA GA GA GA GA GC GA GA GA GC
29850 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CA AG
31090 TG * 13 24/26 TG TG TG TG TG TG TG TG TG GG TG TG AG
34649 CA * 11 20/22 CA CA CA CA CA CA CA CA CT TA CA
34808 TG * 11 20/22 TG TG TG TT TC TG TG TG TG TG TG
36909 TG * 10 19/20 TG TG TG TG TG TG TG TG TT TG
58262 AC * 15 27/30 AC AC TT AC AC AC AC AC AC AC AC AC AC AC TC
67121 CA * 16 29/32 CA CA CA CA CG CA CA CA CA CA CA CA TA CA CA CG
68014 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA CT CG
71325 AT * 12 22/24 AT AG GT AT AT AT AT AT AT AT AT AT
74148 TG * 12 22/24 TG TG CG TG TG TG TG TG TG TG TG CG
78384 CA * 10 18/20 CA CA CA CA CA TA CA CA AA CA
90346 GT * 15 27/30 GT GC GT CT GT GT GT GT GT GT GT GT GT GT GC
113955 TG * 15 27/30 TG TG TG TG TG TG TG TG TG GG TG TG CG TG GG
114227 TC * 12 23/24 TC TC TC TC TC TC TC TC TC TC TC TT
127290 CA * 18 34/36 CA CA CA CA CA CA CA CA CA CA CA CA TA CA CA CA TA CA
142644 CA * 10 18/20 CA CT CA CA CA CA CA CA CT CA
142708 AC * 11 20/22 AC AC AC AC AC CC AC AC AC AC TC
144263 TG * 11 20/22 TG TG TT TA TG TG TG TG TG TG TG
148744 GT * 12 22/24 GT GT GT GG GT GT AT GT GT GT GT GT
149162 AC * 11 20/22 AC AC AC AC AC AC AC AC GC AT AC
155228 AC * 10 18/20 AC AC AC AC AC AC AC AC AC CG
159253 AT * 10 18/20 AT AT AT AT AT AT AT AT TA AT
166329 TG * 11 20/22 TG TG TG TG TG TG TG TG TT TA TG
166354 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TA AG TG TG
174650 GT * 11 21/22 GT GT GT GT GT GT GT GT GT GT GG
177471 AT * 10 18/20 AT AT AC AT AT AT AT AT AA AT
201628 CA * 20 36/40 CA CA CA CA GA CA CA CA CA CA CA CA CA CA CA CA CA CA AC GA
202449 AC * 10 18/20 AC AC AC AC AC AC AA AC AC AA
217303 CT * 11 21/22 CT CT CT CT TT CT CT CT CT CT CT
218224 CA * 10 18/20 CA TA CA CT CA CA CA CA CA CA
221700 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG TG GC
226107 CA * 10 19/20 CA CA CA CA CA CA CC CA CA CA
230772 CA * 10 18/20 CA CA CA CA CA CG CA CG CA CA
248489 CA * 42 76/84 CA CT CA CA CA CA CA CA CA CG CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CT CC GC CG CC
-----------------------------------------------------------------------------------------
Total sequence length......................... 267576
Total number of repeats detected.............. 41
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 0 0 1 5 9 9 3 1 1 0 0
15 to 19 0 0 1 0 1 2 2 1 0 0 0 0
20 to 24 0 0 0 0 0 1 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 1 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 0 1 1 6 13 11 4 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 0 TA = 3
1 AG + 1 GA + 1 CT + 1 TC = 4
4 GT + 11 TG + 13 CA + 6 AC = 34
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295692|gb|AE003576.1|AE003576 Drosophila melanogaster genomic scaffold 142000013386046 section 2 of 16, complete sequence
Position Repeat Coverage Repeat
13692 TG * 11 20/22 TG CG CG TG TG TG TG TG TG TG TG
19655 GT * 10 18/20 GT GT GT GT GT GT GT GT CT TT
25695 AT * 12 23/24 AT AT AT AT AT AT AT AT AT AT AT AG
137575 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AC AA AT
175605 TG * 15 27/30 TG TG TG TG TC TG TG TG TG TG TG TG TG TC TT
180171 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CT CG
182531 TG * 12 23/24 TG TT TG TG TG TG TG TG TG TG TG TG
183834 TA * 11 20/22 TA TA TT TC TA TA TA TA TA TA TA
184357 AT * 16 30/32 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GC
185938 TG * 10 18/20 TG TC TG TG TG TG TG AG TG TG
191177 TG * 11 21/22 TG TG TG TG TG TG TG TG TG TG AG
192484 GT * 12 22/24 GT GT GT GT GG GT GG GT GT GT GT GT
195378 TG * 10 18/20 TG TG TG TG TG TG TG CT TG TG
195663 CA * 10 18/20 CA TA CA CA CA CA CA CA AA CA
196083 TG * 10 18/20 TG TC TG TG TG TG TG TG TG TA
198858 TG * 10 18/20 TG TG TG TG TG TG TG TG TG CT
202151 AC * 10 18/20 AC AC AC CC AC AC AC AC CC AC
240930 AG * 11 20/22 AG AG AG AG AG AG AG AG AG AA AA
287508 CA * 10 18/20 CA CG CA CA CA CA CA CA CA CT
289050 TG * 22 40/44 TG CC TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG AC
299172 AT * 10 18/20 AT AT AT AC AA AT AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 304634
Total number of repeats detected.............. 21
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 1 1 0 2 3 7 2 0 0 0 0
15 to 19 1 0 0 0 0 0 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 1 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 1 1 0 2 3 9 2 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 1 TA = 4
1 AG + 0 GA + 0 CT + 0 TC = 1
2 GT + 9 TG + 3 CA + 2 AC = 16
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295650|gb|AE003575.1|AE003575 Drosophila melanogaster genomic scaffold 142000013386046 section 1 of 16, complete sequence
Position Repeat Coverage Repeat
10643 AT * 13 24/26 AT CT AT AT AT AT TT AT AT AT AT AT AT
20626 TA * 10 18/20 TA TA TA TA TA TA TA TA TT TG
25784 CA * 14 26/28 CA CA CA CA CA CA CA CA CA CA CA CA TG CA
32442 GT * 11 20/22 GT AT GT GT GT GT GT GT TT GT GT
49092 TA * 11 20/22 TA TA TG TA TA TA TA TA TG TA TA
50676 TG * 10 18/20 TG TG TG TG TG TG CG TG TG AG
50905 GT * 12 22/24 GT GT GT AT GT GT GT GT GT GT GA GT
56005 AC * 10 19/20 AC AC AC AC AC AC AT AC AC AC
57818 TA * 10 19/20 TA TA TA TA TA TA TA TA TA TN
58030 CT * 15 27/30 CT CT CT CT CT CT CT CT CT CT CT GT AT CT TT
60183 AC * 15 27/30 AC AG AC AC AC AC AC AA AC AC AC AC AC AC CC
62021 AT * 15 27/30 AT AT AT AT AT GT AT AT AT AT TT AT AT AT AA
63858 AC * 13 24/26 AC AC AT GC AC AC AC AC AC AC AC AC AC
69555 GT * 10 18/20 GT GT GT GT GT GT GT GT AT TT
69600 CA * 13 25/26 CA CA CA CA CA CA CA CA CA CA CA CA CG
69933 TC * 13 24/26 TC TC AC TC TC TC TC TC TC TC TC TT TC
70100 TG * 12 23/24 TG AG TG TG TG TG TG TG TG TG TG TG
71989 TG * 10 18/20 TG TG TG TG TG TG TG TG AT TG
76420 CA * 10 18/20 CA CA CA CA CA CA CG CA CA CT
77811 TG * 10 18/20 TG TG TG TG TG TG TG TG GA TG
81639 AT * 10 18/20 AT AC AT AT AT AT AC AT AT AT
84983 TG * 18 33/36 TG TG TG TG TG TG TG TG TG TC TG TG TG TG TC TG TA TG
85295 CA * 23 43/46 CA CA CA CA CA AA CA CA CA CA GA CA CA CA CA TA CA CA CA CA CA CA CA
99696 CA * 11 20/22 CA CA CA CA CA CA CT CA TA CA CA
116518 AC * 12 22/24 AC AC TC AC GC AC AC AC AC AC AC AC
118050 TC * 11 20/22 TC AC TC TC TC TC TG TC TC TC TC
126751 AC * 13 24/26 AC AT AT AC AC AC AC AC AC AC AC AC AC
139922 AT * 12 22/24 AT AT AT AT AC AT AT AT GT AT AT AT
148055 GT * 15 27/30 GT GT GT GT GT GT GT GT GT GT GT GT GT AG AT
148357 TC * 16 29/32 TC AC TC TC TC TC TC TC TC TC TC TC TC TT TC TG
150360 AT * 10 18/20 AT AT GG AT AT AT AT AT AT AT
150552 GT * 12 22/24 GT GT GT GT GT GT GT GA GT GT GT GG
171238 AG * 12 22/24 AG AG AG AG TG AG AG AG AG AG AG GG
171700 CA * 10 18/20 CA CA CA CT CA CA CA CA CA CT
173408 CA * 13 24/26 CA CA CT CA CA CA CA CA CA CA CG CA CA
174138 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG CG TT
176273 TC * 12 22/24 TC TC CC TC TC TC TC TC TC TC TC AC
181159 TG * 11 20/22 TG TG TC TG TA TG TG TG TG TG TG
181372 GT * 12 22/24 GT GT GT GA GT GA GT GT GT GT GT GT
182144 CA * 18 33/36 CA CC CA CA CA CA CA CA CA CA CA CA CA CA CA GA TA CA
189512 GT * 11 21/22 GT GT GT GT GT GT GT GT GT TT GT
201087 CA * 20 36/40 CA CA CA CA CA CA CA CA CA CA CA CA CA CG CA CG CA CA GA GA
209202 TG * 10 19/20 TG TG TG TG TT TG TG TG TG TG
210179 GA * 12 22/24 GA TA GA GA GA GA GA GA GA GA GG GA
215282 GT * 11 20/22 GT GA GT GA GT GT GT GT GT GT GT
219562 AT * 10 18/20 AT AT AC AT AT AC AT AT AT AT
228445 CA * 10 18/20 CA CA CA CA CA CA CA CA CC CC
239642 GT * 10 18/20 GT GT TT GT GT GT GT GT GT GA
317517 AG * 12 22/24 AG AG AG AG AG AG AG AG AG AG AG TT
325896 AT * 12 22/24 AT AG AT AT AT AT AT AC AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 327242
Total number of repeats detected.............. 50
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 6 3 2 1 4 7 7 8 3 0 0 0
15 to 19 1 0 0 0 1 1 1 1 1 1 0 0
20 to 24 0 0 0 0 0 2 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 7 3 2 1 5 10 8 9 4 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
7 AT + 3 TA = 10
2 AG + 1 GA + 1 CT + 4 TC = 8
9 GT + 8 TG + 10 CA + 5 AC = 32
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7316108|gb|AE002690.1|AE002690 Drosophila melanogaster genomic scaffold 142000013386055, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298777|gb|AE003670.1|AE003670 Drosophila melanogaster genomic scaffold 142000013386055 section 63 of 63, complete sequence
Position Repeat Coverage Repeat
25524 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CA AT
44443 AT * 10 18/20 AT AC AC AT AT AT AT AT AT AT
64010 CT * 10 18/20 CT CT CT CT CT CT CT CT CT TA
71030 TC * 10 19/20 TC TC TC TC TC TC TC TC TC TT
95327 TA * 13 24/26 TA TA TA TA TA TA TA TA TA TA TA TA AT
110155 AT * 15 27/30 AT AT AT AT AT AT AT AT AT AT AT AT AT AA TA
110185 TA * 10 18/20 TA TA TA TA TA TA TA TA TA AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 117404
Total number of repeats detected.............. 7
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 2 0 0 0 1 0 0 1 1 0 0
15 to 19 1 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 2 0 0 0 1 0 0 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 2 TA = 4
0 AG + 0 GA + 1 CT + 1 TC = 2
0 GT + 0 TG + 1 CA + 0 AC = 1
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298740|gb|AE003669.1|AE003669 Drosophila melanogaster genomic scaffold 142000013386055 section 62 of 63, complete sequence
Position Repeat Coverage Repeat
559 AT * 11 20/22 AT AT AT AT AT AT AT AT AT TT TT
1490 CA * 15 28/30 CA CA CA CA CA CA CA CA CA CT CG CA CA CA CA
40298 AT * 11 20/22 AT AT TC AT AT AT AT AT AT AT AT
52163 TA * 15 27/30 TA TA TA TA TA TA TA TA TC CA TA TA TA TA TG
61797 TA * 10 18/20 TA AA TA TA TA TA TA TA TA GA
79604 AT * 27 49/54 AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC GT TC
95261 TA * 15 28/30 TA TA TA TA TA CA TA TA TA TA TA TA TA TA TT
98405 AT * 11 20/22 AT AT AG AT AC AT AT AT AT AT AT
110874 CT * 17 31/34 CT CT CT CT CT CT CT CT CT CT CT CT GT CT CT CT GA
151936 TA * 13 24/26 TA TA TA TA TA TA TA TA TA TA TT AA TA
186920 AT * 13 24/26 AT AC AT AT AT GT AT AT AT AT AT AT AT
233503 AT * 17 32/34 AT AT AA AT AA AT AT AT AT AT AT AT AT AT AT AT AT
249064 AT * 13 24/26 AT AT AT AT AT AT AT AT GT AT GT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 272526
Total number of repeats detected.............. 13
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 2 0 0 0 0 0 0 0 0 0 0
15 to 19 1 2 0 0 0 1 0 0 0 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 1 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 7 4 0 0 0 1 0 0 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
7 AT + 4 TA = 11
0 AG + 0 GA + 1 CT + 0 TC = 1
0 GT + 0 TG + 1 CA + 0 AC = 1
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298706|gb|AE003668.1|AE003668 Drosophila melanogaster genomic scaffold 142000013386055 section 61 of 63, complete sequence
Position Repeat Coverage Repeat
15796 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CA AC
15943 AT * 11 20/22 AT AT AT AT CT AT AT CT AT AT AT
31125 GA * 14 26/28 GA AA AA GA GA GA GA GA GA GA GA GA GA GA
41276 TA * 13 24/26 TA TA TA TG TA TA TG TA TA TA TA TA TA
60644 AC * 10 18/20 AC AC AC AC CC AC AC AC CC AC
65258 CT * 11 20/22 CT CT CT CT CT CT CT CT CG CT CA
93196 TG * 10 18/20 TG TA TG TG TG TG TG TG TG TA
170947 AT * 10 19/20 AT TT AT AT AT AT AT AT AT AT
197439 GT * 10 18/20 GT GT GT GT GT GC CT GT GT GT
198248 CA * 17 31/34 CA CA CA CA CA GA TA CA CA CA CA CA CA CA CT CA CA
199338 CA * 16 30/32 CA CA CA CA CA CA CA CA CA CA CA CA CA CG CA GA
202033 CT * 10 18/20 CT GT TT CT CT CT CT CT CT CT
224907 CA * 11 20/22 CA CA CA CG CA GA CA CA CA CA CA
227877 TG * 23 42/46 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG CG GG GT
239546 TG * 14 26/28 TG GG TG TG TG TG TG TG TG TG TG CG TG TG
239830 CA * 12 22/24 CA GA CA AA CA CA CA CA CA CA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 267300
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 1 0 1 1 3 2 1 0 2 0 0
15 to 19 0 0 0 0 0 2 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 1 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 1 0 1 1 5 3 1 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 1 TA = 3
0 AG + 1 GA + 2 CT + 0 TC = 3
1 GT + 3 TG + 5 CA + 1 AC = 10
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298684|gb|AE003667.1|AE003667 Drosophila melanogaster genomic scaffold 142000013386055 section 60 of 63, complete sequence
Position Repeat Coverage Repeat
17660 GT * 12 22/24 GT GT GT GT GT GT GT GA GT GT GT AT
26498 CA * 11 20/22 CA CA CT CA CA CA CA CA TA CA CA
27819 AT * 10 18/20 AT AT AG AT AT AG AT AT AT AT
28076 GT * 17 31/34 GT GT GT GT GT GT GT GA GT GT GT GT GG GT GT GT GC
46579 CA * 12 22/24 CA CA CA CA CA CG CA CA CA TA CA CA
47298 CA * 10 19/20 CA CA CA CA CA CG CA CA CA CA
54207 CA * 15 28/30 CA GA CA CA CA CC CA CA CA CA CA CA CA CA CA
63708 TG * 12 22/24 TG AG TG TG GG TG TG TG TG TG TG TG
66842 GT * 12 23/24 GT GT GT GT GT GT GT GT GT GT GT TT
67999 TG * 11 20/22 TG TC GG TG TG TG TG TG TG TG TG
68771 TG * 13 25/26 TG TG TG TG AG TG TG TG TG TG TG TG TG
78726 GT * 21 38/42 GT TT GT GT TT GT GT GT GT GT GT GT GT GT GT GT GT GA GT GA GT
79451 CT * 10 18/20 CT CT CT CT CT CT CT CT CT GC
88188 TA * 20 36/40 TA TA TA TG TA TA TA TA TA TA TA TA TA CA TA TA TA TG TA TT
93807 CT * 10 18/20 CT CT CT CT CT CT CT CT CT TA
100827 TC * 10 19/20 TC TC TC TC TC TC TC TC TC TT
104850 CA * 15 27/30 CA CA CA CA CA CA CA CA CA CA CA TA CA CA TG
110995 TA * 11 20/22 TA TA TA CA TA TA TA CA TA TA TA
124065 CA * 11 20/22 CA CA CA CC CA CA CA CA CA CA CT
127663 AC * 11 20/22 AC AC AC AC AC AC AC AC TC AC CC
129356 TA * 16 29/32 TA TA TA TA TA TA TA TA TA TA TA TA TC TG GA TA
133216 CT * 10 18/20 CT CT CT CT CT CT CT GT CT TT
143237 CA * 10 18/20 CA CT CA CA CT CA CA CA CA CA
155832 AG * 18 33/36 AG AG AG AG TG AG AG AG AG AG AG AG AG AG TG AG AG AT
202691 AT * 10 18/20 AT AT AT AT AT AA AT AT AT AG
222279 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA CA AT
223214 AG * 15 28/30 AG AA AG TG AG AG AG AG AG AG AG AG AG AG AG
228244 AT * 13 24/26 AT AT AT AT AT AT AT AT AT AA AT AG AT
231064 TA * 10 18/20 TA TA TA CA TA TA CA TA TA TA
239011 TA * 17 31/34 TA TA TA GA TA GA TA TA TA TA TA TA TA TA AA TA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 263704
Total number of repeats detected.............. 30
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 2 0 0 1 6 3 2 1 3 0 0
15 to 19 0 2 2 0 0 2 0 1 0 0 0 0
20 to 24 0 1 0 0 0 0 0 1 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 5 2 0 1 8 3 4 1 3 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 5 TA = 8
2 AG + 0 GA + 3 CT + 1 TC = 6
4 GT + 3 TG + 8 CA + 1 AC = 16
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298667|gb|AE003666.1|AE003666 Drosophila melanogaster genomic scaffold 142000013386055 section 59 of 63, complete sequence
Position Repeat Coverage Repeat
66495 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CT AA CA
77443 AG * 10 18/20 AG AG AG AG AG AG AG AG AG CT
85101 AG * 10 18/20 AG AG AG AG AG AG AG AG AG CT
104709 TA * 15 27/30 TA TA TA TA TA CA TA TA TA TA TG TA TA TA GA
106167 TA * 11 20/22 TA TA TA TA TA TA TA TA TA CG TA
108437 TA * 12 22/24 TA TA CA GA TA TA TA TA TA TA TA TA
182477 AT * 27 50/54 AT AC AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AA
204897 GT * 15 27/30 GT GT GT GT GA GT GA GT GT GT GT GT GT GT GG
206155 AT * 10 18/20 AT AG AT AT AT AT AT AT AT TT
213009 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TG CA
219561 AT * 11 21/22 AT AT AC AT AT AT AT AT AT AT AT
220892 AC * 16 29/32 AC AC AC AC AC AC AC AC AC AC AC AC AT AT AC AT
220960 AT * 10 19/20 AT AT AT AT AT AT AT AT AT AC
221489 AC * 18 33/36 AC AC AC AC AC AC AC AC AC AC AC CC AT AC AC AC TC AC
224128 TG * 10 18/20 TG TG TG TG TG CG TA TG TG TG
234363 GT * 14 26/28 GT GT GT GT GT GT GT GT GT GT GT GT AT GG
235807 AC * 10 18/20 AC AC AC CC AC AC AC AC AC AT
243901 CA * 12 22/24 CA GA CA CA CA CA CA GA CA CA CA CA
244695 GT * 10 19/20 GT GT GT GT GT GT GT GT GT CT
244959 CA * 10 18/20 CA CC CT CA CA CA CA CA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 247952
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 2 2 0 1 3 2 2 0 0 0 0
15 to 19 0 1 0 0 2 0 0 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 1 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 3 2 0 3 3 2 3 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 3 TA = 7
2 AG + 0 GA + 0 CT + 0 TC = 2
3 GT + 2 TG + 3 CA + 3 AC = 11
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298648|gb|AE003665.1|AE003665 Drosophila melanogaster genomic scaffold 142000013386055 section 58 of 63, complete sequence
Position Repeat Coverage Repeat
5244 TA * 10 18/20 TA TA CA TA TA TA TA TA TG TA
57383 TA * 13 25/26 TA TA TA TA TA TA TA TA TA TA TA TT TA
58963 AC * 15 27/30 AC AC AC AC AC AC AC AC AC AC AC AC AC AT GT
85772 AC * 13 25/26 AC AC AC AC AC AC AC GC AC AC AC AC AC
95749 CA * 13 24/26 CA CC CA CA CA CA CA CA CA CA CA CA CT
99309 TG * 12 22/24 TG CG TG CG TG TG TG TG TG TG TG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 205045
Total number of repeats detected.............. 6
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 2 0 0 1 1 1 0 0 0 0 0
15 to 19 0 0 0 0 1 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 2 0 0 2 1 1 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 2 TA = 2
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 1 TG + 1 CA + 2 AC = 4
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298621|gb|AE003664.1|AE003664 Drosophila melanogaster genomic scaffold 142000013386055 section 57 of 63, complete sequence
Position Repeat Coverage Repeat
28985 AT * 12 22/24 AT AT AT AT AT AG AT AT AT AT AT GT
55016 AT * 10 18/20 AT AT AT AT AT AT GT AC AT AT
61683 GT * 10 18/20 GT GT GT GT GT GT TC GT GT GT
64590 GT * 15 28/30 GT GT GT GT GT GT GT AT GT GT GT GT GT GT GC
81253 AT * 10 18/20 AT AT AA AT AT AA AT AT AT AT
88767 CT * 14 26/28 CT CC CT CT CT CT CT CT CT CT CT CT CT CA
95024 AG * 10 18/20 AG AG AG AG AG AG AG AG AG GA
103695 GT * 16 29/32 GT GT CT GA GT GT GT GT GT GT GT GT GT GT GG GT
109771 TG * 12 22/24 TG TG TG CG TG TG TG TG TT TG TG TG
109842 TG * 13 25/26 TG TG TG TG TG TG TG TG TG TG TG TT TG
113947 CA * 19 35/38 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CG CA CA TG CA
131501 GT * 13 24/26 GT GT GT GT GT GT GT GT TT CT GT GT GT
173647 AT * 15 27/30 AT AT AT AT AT AA AT AT AC AT AT AT AT AT AG
180492 TA * 11 20/22 TA TA TA TA TA TA TT GA TA TA TA
199389 TA * 12 22/24 TA TA TA AA TA TA TA TA TA TA TA AA
203790 TA * 10 18/20 TA TA TA TA TG TA TA TA TG TA
236647 TA * 11 21/22 TA AA TA TA TA TA TA TA TA TA TA
253923 CT * 13 24/26 CT CT CT CT CT CT CT CT CT CT CT CT GC
257803 TA * 10 18/20 TA TA TA TA CA TA TA TA TA TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 266340
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 5 1 0 0 0 2 2 0 2 0 0
15 to 19 1 0 0 0 0 1 0 2 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 5 1 0 0 1 2 4 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 5 TA = 9
1 AG + 0 GA + 2 CT + 0 TC = 3
4 GT + 2 TG + 1 CA + 0 AC = 7
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298582|gb|AE003663.1|AE003663 Drosophila melanogaster genomic scaffold 142000013386055 section 56 of 63, complete sequence
Position Repeat Coverage Repeat
625 TA * 11 20/22 TA TA TA TG TA TA TA TA TT TA TA
22754 TG * 11 20/22 TG GG TG TG TG TG TG TG GG TG TG
25568 AG * 11 20/22 AG TG CG AG AG AG AG AG AG AG AG
32614 CT * 11 20/22 CT CA CT CG CT CT CT CT CT CT CT
38324 TG * 10 18/20 TG TG TC TG TG TG TG CG TG TG
38423 GA * 15 27/30 GA GA AA GA GA GA GA GA GA GA GA GA GA GC AA
61173 TA * 10 18/20 TA TA TA TA TT TA TA TA TA AA
101338 AT * 10 18/20 AT AT AT AT AC AT AC AT AT AT
108085 CA * 15 27/30 CA CA CA CA CA CA CA CA CA CA CA CA CA CC AC
109847 TA * 12 22/24 TA TA TA TA TA TA TA CA TA TA TA TT
133857 CA * 11 21/22 CA CA CA CA CA CA CA CA CA CG CA
146046 TG * 17 31/34 TG TG TG TG TG TG TG TT TG TG TG TG TG TT TG AG TG
152786 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG CG AG
153012 TG * 12 22/24 TG TG TG TG TG GT TG TG TG TG TG TG
154881 GT * 10 18/20 GT GG GT GT GT GT GT GG GT GT
161010 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA AA GA
161103 GT * 11 20/22 GT GT GT AT GT GT GT GT GT GT GA
161332 GT * 10 18/20 GT GT GT GT GT GT GT GT GT TG
163686 AC * 12 22/24 AC GA AC AC AC AC AC AC AC AC AC AC
167234 TA * 11 20/22 TA GA TA TA TA TA TA TA TA TA GA
167638 TG * 11 20/22 TG TC GG TG TG TG TG TG TG TG TG
168099 AT * 12 22/24 AT AC AT AC AT AT AT AT AT AT AT AT
178229 AT * 18 33/36 AT AT AT AT AT AT AT AT CT AT AT AT AT AT AT AT GT AG
183367 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CC TA CA
183732 GT * 10 18/20 GT GT GT GT GT GT GT GG GT GG
185223 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GT GT GA GC
185925 CA * 11 20/22 CA CA CA CC CA CA CA CC CA CA CA
186640 TG * 16 30/32 TG CG TG TG TG TG TG TG TG TG TG TG TG TG TG TT
188611 CA * 13 24/26 CA CC CA CA CA CA CA CA CA CA CA CA GA
193586 TA * 13 24/26 TA TA TA TA TA CA TA CA TA TA TA TA TA
195574 TG * 10 18/20 TG GG TG TG TC TG TG TG TG TG
199461 AC * 12 22/24 AC AC AC AC AC AC AC AC AG AC AC AT
206630 TG * 12 23/24 TG TG TC TG TG TG TG TG TG TG TG TG
209197 AT * 11 20/22 AT AT AA AT AT AC AT AT AT AT AT
210610 TG * 12 22/24 TG TG TG TG TG TG TG TC TA TG TG TG
243622 TA * 12 22/24 TA TA TA TA TA TA TA TA AA TA TA TG
246744 AT * 16 29/32 AT AT AG AT AT AT AT AT AT AT AT AT GT AT AT GT
252046 GT * 17 31/34 GT GT GT GT GT GT GT GT GC GC GT GT GT GT GA GT GT
259407 GT * 13 24/26 GT GT GT TT GT GT GT GT TT GT GT GT GT
265484 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG TG GT
266936 CA * 12 23/24 CA CC CA CA CA CA CA CA CA CA CA CA
267057 CA * 10 18/20 CA CA CA CA CA CA CA CA CA GT
280576 CA * 10 18/20 CA CA CA CA CG CA CA CA CC CA
287701 AT * 15 27/30 AT AT CT AT AT AT AT AA AT AT AT AT AT AT TT
291257 TG * 10 18/20 TG TG TG TG TG TG TG TG CG GG
-----------------------------------------------------------------------------------------
Total sequence length......................... 299476
Total number of repeats detected.............. 45
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 6 1 0 2 8 10 6 0 1 0 0
15 to 19 3 0 0 1 0 1 2 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 6 6 1 1 2 9 12 7 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
6 AT + 6 TA = 12
1 AG + 1 GA + 1 CT + 0 TC = 3
7 GT + 12 TG + 9 CA + 2 AC = 30
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298553|gb|AE003662.1|AE003662 Drosophila melanogaster genomic scaffold 142000013386055 section 55 of 63, complete sequence
Position Repeat Coverage Repeat
50 AT * 13 24/26 AT AT AT AT AT AT AT AT AT AT AT TT AA
21675 TG * 11 20/22 TG TG TG CA TG TG TG TG TG TG TG
37813 CA * 11 20/22 CA AA AA CA CA CA CA CA CA CA CA
46071 AT * 11 21/22 AT GT AT AT AT AT AT AT AT AT AT
48595 CA * 10 19/20 CA CA CA CA CA CA CC CA CA CA
55389 AC * 12 22/24 AC AC AC AC AT AC AC TC AC AC AC AC
64694 AC * 17 31/34 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC GT GC
65008 CA * 11 20/22 CA CT CA CA CA CA CA CA CA CT CA
67798 AT * 10 18/20 AT AT TT AT AT AT AT AT AT TT
86766 AC * 10 18/20 AC AC AC AC AC AA GC AC AC AC
149006 GT * 16 29/32 GT GT GC GT GT GT GT GT GT GT GT GT GT TT AT GT
158135 TG * 10 18/20 TG GG TG TG TG TG TC TG TG TG
184122 AG * 13 24/26 AG AG CG AG AG AG AG AG AG AG AG AC AG
219814 AG * 17 31/34 AG AG AG AG AG AG AG AG AG AG AG GA AG AG AG AG TG
226657 TG * 12 22/24 TG TA TG TG TG TG TG TG TG TA TG TG
233643 TA * 16 29/32 TA TA TA CA TA CA TA TA TA TA TA TA TA TA TA TC
236092 CA * 11 20/22 CA CA CA CA GA CA CA CA CA CA CC
262843 TA * 10 18/20 TA TA TG TA TA TA TA TA TA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 263214
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 1 1 0 2 4 3 0 0 0 0 0
15 to 19 0 1 1 0 1 0 0 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 2 2 0 3 4 3 1 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 2 TA = 5
2 AG + 0 GA + 0 CT + 0 TC = 2
1 GT + 3 TG + 4 CA + 3 AC = 11
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298501|gb|AE003661.1|AE003661 Drosophila melanogaster genomic scaffold 142000013386055 section 54 of 63, complete sequence
Position Repeat Coverage Repeat
8224 AG * 12 22/24 AG AG AG AG AG AG AG AG AG AG AG CT
12059 CA * 16 29/32 CA CA CA CA CA CA CA AA CA CA CA CA CA CT CA AA
13298 GT * 18 33/36 GT GG GT GT GT GT GT GT GT GT GT GT GT GT GT GC GT TT
20258 TG * 10 18/20 TG TG TG TG TG TG TG TG TG GA
58691 AC * 10 18/20 AC AC AC AC AC AC AC AC TC GC
86355 TA * 18 33/36 TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TG TA CA
117453 GT * 12 23/24 GT GT GT GT GT GT GT GT GT GT GT GA
117686 TG * 11 20/22 TG TG TG TT TG TG TA TG TG TG TG
145008 CA * 11 21/22 CA CA CA CA CA CA CT CA CA CA CA
173994 GT * 11 21/22 GT AT GT GT GT GT GT GT GT GT GT
190464 TA * 16 29/32 TA CA TA TA TA TA TA TA GA TA TA TA TA TA TA GA
209202 AT * 12 22/24 AT AT AT AT AT AT AG AT AT AT AT AG
210845 AT * 10 18/20 AT AT AT AT AT AT AC AT AC AT
228081 GT * 14 26/28 GT GT GT GT GT GT GT GT GT GT GT GG AT GT
229015 GT * 11 20/22 GT GC GT GT GT GT GT GT GT GT CT
235512 CA * 28 51/56 CA CA CA CA CA CA CA CA CA CA CA CA CG CA CA CA CA CA CA CA CA CA CA CA CA GG AA AA
236517 GA * 13 25/26 GA GA GA GA TA GA GA GA GA GA GA GA GA
260308 AC * 10 18/20 AC AC AC AG AC AC AC AC AC TC
263851 TA * 22 40/44 TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA AA TT TA TA AA
-----------------------------------------------------------------------------------------
Total sequence length......................... 265023
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 0 1 1 2 1 2 4 0 0 0 0
15 to 19 0 2 0 0 0 1 0 1 0 0 0 0
20 to 24 0 1 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 1 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 3 1 1 2 3 2 5 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 3 TA = 5
1 AG + 1 GA + 0 CT + 0 TC = 2
5 GT + 2 TG + 3 CA + 2 AC = 12
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298465|gb|AE003660.1|AE003660 Drosophila melanogaster genomic scaffold 142000013386055 section 53 of 63, complete sequence
Position Repeat Coverage Repeat
36810 AT * 10 18/20 AT AC AT GT AT AT AT AT AT AT
57845 GT * 10 18/20 GT GT AT CT GT GT GT GT GT GT
67862 AC * 10 18/20 AC AC AC AC GC AC AC AC AC AG
71591 TA * 11 20/22 TA TA TA TA TA CA TA CA TA TA TA
77452 AT * 10 19/20 AT AT AT AT AT AT AT AT AT GT
89298 TA * 11 20/22 TA TA TA TA TA TA TA TA TA AA GA
91791 AT * 12 22/24 AT AT AT AT AT AT AT AC AT AT AT GT
93972 CA * 15 27/30 CA CA CA CA CA CA CA CA CA CA CA CA CA TG TA
99748 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT GT TA
99808 AG * 11 20/22 AG GG AG AA AG AG AG AG AG AG AG
105091 GA * 15 27/30 GA GA GA GG GA GA GA GA AA GA GA GA GA GA GT
106108 GT * 11 20/22 GT GT GT GT GT GT GT GT GT GT TG
167241 CT * 16 30/32 CT CT CT CT CT CT CC CT CT CT CT CT CT CT CT TT
168402 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA CA GT
170236 CA * 10 18/20 CA AA CA CA CG CA CA CA CA CA
175126 AG * 13 24/26 AG AG AG AG AG AG AG AG AG AG TG AA AG
188753 AC * 25 46/50 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AA AA AA AC AC AC AC AT
191364 TC * 12 22/24 TC TC TC TC TC TC TC TC TC TC TT CC
196120 AC * 12 22/24 AC GC AG AC AC AC AC AC AC AC AC AC
209026 AC * 10 18/20 AC CC AC AC AC AC TC AC AC AC
209388 AC * 13 24/26 AC AC CC AC AC AC AC AC AC AC AC AC AG
225499 CA * 17 31/34 CA CA CA CA CA CA CA CA CA CA CA CA CA CA GG CG CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 231972
Total number of repeats detected.............. 22
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 2 2 0 4 2 0 3 1 0 0 0
15 to 19 0 0 0 1 0 2 0 0 0 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 1 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 2 2 1 5 4 0 3 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 2 TA = 5
2 AG + 1 GA + 1 CT + 1 TC = 5
3 GT + 0 TG + 4 CA + 5 AC = 12
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298444|gb|AE003659.1|AE003659 Drosophila melanogaster genomic scaffold 142000013386055 section 52 of 63, complete sequence
Position Repeat Coverage Repeat
10551 TA * 12 22/24 TA TA GA TA TA TA TA TA TA TA TA TT
11982 AT * 10 18/20 AT AT AT AT AT AT AT AC AT TT
20552 CA * 10 19/20 CA CA AA CA CA CA CA CA CA CA
23845 AC * 13 24/26 AC AC AC AC AC AC AC AT AC AA AC AC AC
38916 GT * 13 25/26 GT GT GT GT GT GT GT GT GT GT GT GT GA
38952 GA * 10 18/20 GA GA AG GA GA GA GA GA GA GA
40042 CA * 10 19/20 CA CA AA CA CA CA CA CA CA CA
127446 TC * 13 24/26 TC TC TC TC TC TC TC TC TC TC TC TA TT
145756 AC * 12 22/24 AC AC AC AG AC AC GC AC AC AC AC AC
167514 AC * 17 31/34 AC AC AC AC AC AC AC AC AC AC AG AA AC AC AC TC AC
167594 GT * 12 22/24 GT GT GT GT GT GT TT GT GT GT GG GT
168762 AT * 12 22/24 AT AA AT AT AA AT AT AT AT AT AT AT
203200 AC * 10 19/20 AC AC AC AC AC AC AC AC AC AA
212155 CT * 20 37/40 CT CT CT CT CT CT CT CT CT CT CT CT CT CC CT CT TT CT CT CC
227445 GT * 10 18/20 GT GT GT TT GT GT GT GT GT TT
231665 AG * 12 23/24 AG AA AG AG AG AG AG AG AG AG AG AG
-----------------------------------------------------------------------------------------
Total sequence length......................... 260897
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 1 1 1 3 2 0 3 1 0 0 0
15 to 19 0 0 0 0 1 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 1 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 1 1 1 4 2 0 3 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 1 TA = 3
1 AG + 1 GA + 1 CT + 1 TC = 4
3 GT + 0 TG + 2 CA + 4 AC = 9
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298430|gb|AE003658.1|AE003658 Drosophila melanogaster genomic scaffold 142000013386055 section 51 of 63, complete sequence
Position Repeat Coverage Repeat
2160 AT * 10 18/20 AT AC AT AT AT GT AT AT AT AT
4364 TG * 13 24/26 TG CG TG TG TG TG TG TG TG TG CG TG TG
4565 AT * 10 18/20 AT AT AC AT AT AT AT GT AT AT
11892 TA * 10 19/20 TA TA TA TA TA TA TA TA TA TT
16563 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AT TG
32193 AC * 13 24/26 AC AC CC AC AG AC AC AC AC AC AC AC AC
34201 AT * 15 28/30 AT TC AT AT AT AT AT AT AT AT AT AT AT AT AT
48938 TG * 11 20/22 TG TA TG TG TG TG TG TG TG GG TG
86844 CA * 12 22/24 CA CA CA CA CA AA CA CA CA CA CA AA
120559 CA * 11 20/22 CA CA TA CA CG CA CA CA CA CA CA
129387 AC * 15 27/30 AC AC AC AC AC AC AT AC AC AC AA AC AC AC AA
173182 AC * 10 19/20 AC AC AC AC AC AC AC CC AC AC
206396 AC * 10 18/20 AC AC AC AC AC AC GC AC AC AG
238841 TC * 11 20/22 TC CC TT TC TC TC TC TC TC TC TC
259826 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC AT AC AA
269498 AC * 16 29/32 AC AC AC AC GC AC AC AC AC AC AC AC AC TC AC TC
-----------------------------------------------------------------------------------------
Total sequence length......................... 270233
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 1 0 0 4 2 2 0 1 0 0 0
15 to 19 1 0 0 0 2 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 1 0 0 6 2 2 0 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 1 TA = 5
0 AG + 0 GA + 0 CT + 1 TC = 1
0 GT + 2 TG + 2 CA + 6 AC = 10
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298413|gb|AE003657.1|AE003657 Drosophila melanogaster genomic scaffold 142000013386055 section 50 of 63, complete sequence
Position Repeat Coverage Repeat
13523 AT * 12 22/24 AT AT AT AA AT AT AT TT AT AT AT AT
26217 TG * 15 28/30 TG TG TG TG TG TG TG TG TG TG TG TG CG TC TG
29827 CA * 12 22/24 CA CT CA CA CA CA CA CA CA TA CA CA
44140 TG * 10 18/20 TG TG TA TG TG TG TG TG TG TA
47770 TA * 23 42/46 TA TA TA TA CA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TG TA
51056 AC * 10 18/20 AC AG AC AC AC AC AC AC TC AC
67339 AT * 10 18/20 AT AT AT AT GT AT AT AT AT AA
69609 TA * 15 27/30 TA TA TG TA TA TA TA TA TA TA TA TA TG TA AA
82201 AC * 11 20/22 AC AC AC AC AC AC AC AC TC AC AT
131048 TG * 14 26/28 TG TG TG TG TG TG TG TG TG TG TG AG TG CG
138221 TG * 28 51/56 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG AG TG TG AG TG GG GC TG
153983 GT * 12 23/24 GT GT GT GT GT GT GT GT GC GT GT GT
155250 TG * 10 18/20 TG TG TG TG TG TG TG AG AG TG
204359 TA * 15 28/30 TA TA TA TA TA TG TA TA TA TA TA TA TA TA TC
230247 CA * 10 18/20 CA CT CG CA CA CA CA CA CA CA
235921 CA * 10 18/20 CA CA CA CA CA CA CA CA CT CC
-----------------------------------------------------------------------------------------
Total sequence length......................... 256054
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 0 0 0 2 3 3 1 0 0 0 0
15 to 19 0 2 0 0 0 0 1 0 0 0 0 0
20 to 24 0 1 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 1 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 3 0 0 2 3 5 1 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 3 TA = 5
0 AG + 0 GA + 0 CT + 0 TC = 0
1 GT + 5 TG + 3 CA + 2 AC = 11
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298410|gb|AE003656.1|AE003656 Drosophila melanogaster genomic scaffold 142000013386055 section 49 of 63, complete sequence
Position Repeat Coverage Repeat
9088 TG * 10 18/20 TG TG TT TG TG TG TG TG TA TG
11420 AT * 12 22/24 AT AT AT AT AT AT GT AT AT AT AT GT
65461 AC * 10 19/20 AC AC AC AC AT AC AC AC AC AC
91203 CA * 11 20/22 CA CA CA CA CA CA CA CT CA CA AA
112204 AT * 12 22/24 AT AT AT AT AT AT AT TT AT AT AT TT
114558 AG * 10 19/20 AG AG AG AG AG AG AG AG AA AG
194482 GT * 13 24/26 GT GT GC TT GT GT GT GT GT GT GT GT GT
207516 CA * 10 18/20 CA AA CA CA GA CA CA CA CA CA
208661 TA * 10 18/20 TA CA TA TA TA TA TA TA TA TT
225889 TC * 10 18/20 TC TC TA TC TC TA TC TC TC TC
228812 AT * 15 27/30 AT AT AT AT AT AT AT AT AT AT AC AT AT AC AC
241781 AC * 12 22/24 AC GC GC AC AC AC AC AC AC AC AC AC
242273 TA * 12 22/24 TA TA TA TA TA TA TA TA TA TT TA TT
-----------------------------------------------------------------------------------------
Total sequence length......................... 251154
Total number of repeats detected.............. 13
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 2 1 0 2 2 1 1 1 0 0 0
15 to 19 1 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 2 1 0 2 2 1 1 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 2 TA = 5
1 AG + 0 GA + 0 CT + 1 TC = 2
1 GT + 1 TG + 2 CA + 2 AC = 6
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298378|gb|AE003655.1|AE003655 Drosophila melanogaster genomic scaffold 142000013386055 section 48 of 63, complete sequence
Position Repeat Coverage Repeat
593 GT * 10 18/20 GT GC GT GT GT GT GT GT GT GA
11801 AT * 10 18/20 AT AT AT AT AA AT AT AT AT TT
13965 AT * 13 24/26 AT AT TT AT AT AT AT CT AT AT AT AT AT
39206 AC * 11 20/22 AC AC AC TC AC AC AC AC AC AC AT
39395 CA * 12 22/24 CA CA CA CA CA CA GA CA CA CA CA CG
43695 AT * 10 18/20 AT CT AT AT GT AT AT AT AT AT
45486 GA * 10 18/20 GA GA GG GA GA GA GA GA GC GA
46680 TG * 12 22/24 TG TG TG TT TG TG TG TG TG TG TT TG
65190 TC * 13 24/26 TC TC AC TC AC TC TC TC TC TC TC TC TC
154729 AT * 10 18/20 AT AT AC AT AT AC AT AT AT AT
158447 TG * 11 20/22 TG TG TG TG CG TG TG TG TG TG CG
173458 GT * 10 18/20 GT GT GT GT GT GT GT GA GT TT
177739 CA * 17 31/34 CA AA CA CT CA CA CA CA CA CA CA CA CA CA CA CA AA
202427 GT * 11 20/22 GT GT GT GT GC GT GT GT GT GT GA
205518 AG * 12 22/24 AG GG AG AG AG AG AG AG AG AG TG AG
207815 TA * 10 18/20 TA AA AA TA TA TA TA TA TA TA
208616 AT * 12 22/24 AT AT AT AA TT AT AT AT AT AT AT AT
232356 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TG TG TG TG AA TT
241175 GT * 11 20/22 GT GT GT AT GT GT AT GT GT GT GT
245290 TA * 11 20/22 TA TA TA TA TA TA TA TA TA TA CC
249128 CA * 16 29/32 CA CA CA AA CA CA CA CA CA CA CA CA CA CA CA TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 254383
Total number of repeats detected.............. 21
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 2 1 1 1 1 2 4 1 0 0 0
15 to 19 0 0 0 0 0 2 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 2 1 1 1 3 3 4 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 2 TA = 7
1 AG + 1 GA + 0 CT + 1 TC = 3
4 GT + 3 TG + 3 CA + 1 AC = 11
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298369|gb|AE003654.1|AE003654 Drosophila melanogaster genomic scaffold 142000013386055 section 47 of 63, complete sequence
Position Repeat Coverage Repeat
20974 TA * 10 18/20 TA TA CA TA TA CA TA TA TA TA
62784 TG * 10 18/20 TG TG TG TG TG TG TG TG GG GG
82536 CA * 10 18/20 CA CT CA AA CA CA CA CA CA CA
92117 TC * 18 33/36 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TT TC TC GA
93583 AC * 11 20/22 AC AC AC GC AC AC AC AC AC AC AT
121448 TG * 11 20/22 TG TG TG TG TG TG AG TG TG TG CG
125833 CA * 19 35/38 CA CA CA CA CA CA CA GA CA CA CA CG CA CA AA CA CA CA CA
130904 TA * 10 18/20 TA TA TA TT TA TA TA TA TA TT
142622 AT * 12 22/24 AT AT GT AT AA AT AT AT AT AT AT AT
158539 CA * 22 40/44 CA TA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA GA CA GA GA
171401 AT * 12 22/24 AT AT AT AT AT AT AT AT AT AT AT TA
171757 GT * 11 20/22 GT GT GT GT GT GT AT GT GT GT GC
197886 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CT CC
201257 CT * 10 19/20 CT CT CT CT CT CT CA CT CT CT
220236 TG * 13 24/26 TG TG TG TG TT TG TG TG TG TG TG TG CG
224031 GT * 10 18/20 GT GT GT GC TT GT GT GT GT GT
227597 AC * 11 20/22 AC AC AC AC TC AC AC CC AC AC AC
236121 GT * 10 18/20 GT GT GT AT GT GT AT GT GT GT
241510 CA * 13 24/26 CA CA CA CA CA CA TA CA CA CA CT CA CA
248412 GT * 10 18/20 GT GT AT GT GT TT GT GT GT GT
257216 AT * 10 18/20 AT AC AT AT AT AT AT AT TT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 261000
Total number of repeats detected.............. 21
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 2 0 0 2 3 3 4 0 1 0 0
15 to 19 0 0 0 0 0 1 0 0 1 0 0 0
20 to 24 0 0 0 0 0 1 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 2 0 0 2 5 3 4 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 2 TA = 5
0 AG + 0 GA + 1 CT + 1 TC = 2
4 GT + 3 TG + 5 CA + 2 AC = 14
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298355|gb|AE003653.1|AE003653 Drosophila melanogaster genomic scaffold 142000013386055 section 46 of 63, complete sequence
Position Repeat Coverage Repeat
3730 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CA TT
14749 TG * 11 20/22 TG TG TG CG TG TG TG TG TG TC TG
45044 TG * 11 21/22 TG TG TG TG TG TG TG TG AG TG TG
58371 CA * 11 20/22 CA CA CA CA CT CA CA CA CA CA CG
67593 AC * 10 19/20 AC AC AC AC AC AC AC AC AC AG
72294 TG * 10 18/20 TG TG TG TG TG CG TG CG TG TG
80882 AT * 16 29/32 AT AT AT AT AT AT AT AT AT GT AT AT AT AT AT TC
95307 TG * 11 20/22 TG TG TG TT GG TG TG TG TG TG TG
113041 TC * 16 29/32 TC CA TC TC TC TC TC TC TC TC TC TC TC TC GC TC
130638 TA * 11 20/22 TA TA TA TA TA TA TA TT TG TA TA
131131 AT * 11 20/22 AT AC AT AT AT AT AT AT AT AG AT
135144 CA * 12 22/24 CA CA CC CT CA CA CA CA CA CA CA CA
136477 CA * 14 26/28 CA CA CA CA CA CA CA CA CA CA CA CC CA CC
147025 CA * 19 35/38 CA CT AA CA CA CA CA CA CA CA CA CA CA CA CA CA CG CA CA
176263 AT * 12 22/24 AT AT AT AT AT GT AT AT AC AT AT AT
187287 TG * 12 23/24 TG TG TG TG TG TG TG TG TG TG TT TG
199447 AC * 10 18/20 AC GC AC AC AC AC AC AC AC AG
207743 CA * 10 18/20 CA CA CA CA CA CA CA AA CG CA
207952 CA * 11 20/22 CA CA CA CA CA CA CA TA CA CA CC
210170 GT * 12 22/24 GT CT GT GT GT GT GT GT GT GT TT GT
223087 CA * 10 18/20 CA GA CA CA CA CA CA CA CT CA
225498 GT * 10 18/20 GT GT GG AT GT GT GT GT GT GT
226890 TG * 10 18/20 TG TG TG TG TG TG TG TG AG TA
229580 TG * 15 27/30 TG TG TT TG TT TG TG TG TG TG TG TG TG TG TT
234044 TA * 11 20/22 TA TA TA TA TT TA TA TA TA TA AA
-----------------------------------------------------------------------------------------
Total sequence length......................... 249742
Total number of repeats detected.............. 25
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 2 0 0 2 7 6 2 0 0 0 0
15 to 19 1 0 0 0 0 1 1 0 1 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 2 0 0 2 8 7 2 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 2 TA = 5
0 AG + 0 GA + 0 CT + 1 TC = 1
2 GT + 7 TG + 8 CA + 2 AC = 19
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298316|gb|AE003652.1|AE003652 Drosophila melanogaster genomic scaffold 142000013386055 section 45 of 63, complete sequence
Position Repeat Coverage Repeat
91 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG GC TG
1377 GT * 12 23/24 GT GT GT GT GT GT GT GT GT GT CT GT
3484 GA * 11 20/22 GA GC TA GA GA GA GA GA GA GA GA
15025 AT * 11 20/22 AT AT AT AT AT AT AT AT AT TT AC
23591 GT * 10 19/20 GT GT GT GT GT GT GT GT GG GT
27878 CA * 11 20/22 CA GA CA CA CA CA CA CA CA CA GA
32932 AT * 11 20/22 AT AT AT AT AT AT CT AT AT AT AA
46789 AT * 17 31/34 AT AT AT AT AT TT AT AT AT AT AT AT AG AT AT AT AC
47403 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AA AA
47887 TA * 21 39/42 TA TA TA TA TA TA TA TA TG TA TA TA TA TA TA TG TA TG TA TA TA
54313 TG * 10 18/20 TG TG TG TG TG TG TG TG TG GT
55378 AC * 12 22/24 AC AC AC GC AC AC AC AC AC AC AC AT
58134 GT * 10 18/20 GT TT GT GT GT GT GT GT GT AT
60301 CA * 14 26/28 CA CA CA CA CA CA CA CA CA CA CA CT CA TA
74016 TC * 11 20/22 TC TC TC TT TC TC TC TC TC TC TT
74727 TC * 11 20/22 TC TC TC TC TC TC TC TC TC GC TT
75642 GT * 10 18/20 GT CT GT AT GT GT GT GT GT GT
77187 AC * 10 18/20 AC AC AC AC AT AC AC AC AC AT
100717 CT * 10 18/20 CT CT TT CT CT CT CT CT CG CT
102982 CT * 10 18/20 CT CT CT CT CT CT CT CT CA GT
133931 AT * 10 18/20 AT AG AT AT AT AT AT AT AT TT
153459 TC * 10 18/20 TC TC TC TC TC TC TC AA TC TC
156917 CT * 17 31/34 CT CT CT CT CT CT AT CT CT CT CT CT CT CT AT CT AT
157234 AC * 11 21/22 AC AC AT AC AC AC AC AC AC AC AC
157563 CA * 18 33/36 CA CC CA CA CA CA CA CA CA CA CA CA CA CA GA CA CA CT
160194 TA * 10 18/20 TA TA TA TA TA TA TA TA TA CT
168184 TC * 11 20/22 TC CC TC TA TC TC TC TC TC TC TC
239025 AT * 11 20/22 AT AT AT AT GT AT AT AT TT AT AT
249800 AT * 10 18/20 AT AA AT AT AT AT AT GT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 258166
Total number of repeats detected.............. 29
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 6 1 0 1 3 2 2 4 4 2 0 0
15 to 19 1 0 0 0 0 1 0 0 0 1 0 0
20 to 24 0 1 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 7 2 0 1 3 3 2 4 4 3 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
7 AT + 2 TA = 9
0 AG + 1 GA + 3 CT + 4 TC = 8
4 GT + 2 TG + 3 CA + 3 AC = 12
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298303|gb|AE003651.1|AE003651 Drosophila melanogaster genomic scaffold 142000013386055 section 44 of 63, complete sequence
Position Repeat Coverage Repeat
531 AT * 12 22/24 AT AT AT AT AT AT AC AT AC AT AT AT
10280 TC * 12 23/24 TC TC TC TC AC TC TC TC TC TC TC TC
21742 TG * 10 18/20 TG TA TG TG TG TG CG TG TG TG
61539 CT * 13 24/26 CT CT CT CT TT CT CA CT CT CT CT CT CT
61902 CT * 10 18/20 CT CT CG CT CT CC CT CT CT CT
77049 AT * 16 29/32 AT AT AT AT AT GT AT AT AT AT AT AT AT AT AT GG
78157 GT * 11 20/22 GT GC GA GT GT GT GT GT GT GT GT
78273 AT * 10 18/20 AT AT AT AA AT AT GT AT AT AT
104158 AT * 13 25/26 AT AT AT AT AT AT AT AT AT AT AT AT CT
112632 TA * 14 26/28 TA TA CA TA TA TA TA CA TA TA TA TA TA TA
144180 TC * 10 18/20 TC TC TC TC TC GC TC TC TC TA
147192 TA * 10 18/20 TA TG TA TC TA TA TA TA TA TA
160178 GT * 10 18/20 GT GT GC GT GC GT GT GT GT GT
166973 TA * 13 24/26 TA TA TG TT TA TA TA TA TA TA TA TA TA
173022 TC * 13 24/26 TC TA TC TC TG TC TC TC TC TC TC TC TC
184562 CT * 11 20/22 CT CT CC CA CT CT CT CT CT CT CT
191034 CA * 10 19/20 CA AA CA CA CA CA CA CA CA CA
193828 AT * 10 18/20 AT AT AT AT AA AT AA AT AT AT
208971 TG * 12 22/24 TG AG TG TG TG TG TG TG TG TG TG TA
220897 TG * 10 18/20 TG TG TG GG TG TG TG TG TG TT
226828 GA * 12 22/24 GA AG GA GA GA GA GA GA GA GA GA GA
230089 TG * 11 20/22 TG TG TG TG CG TG TG TG TG TG GG
236416 CA * 12 23/24 CA CA CA CA CA CA CA CA CA CA CA GA
251870 TG * 13 24/26 TG TG TG TA TG TG TG TG TG TG TG TG TT
-----------------------------------------------------------------------------------------
Total sequence length......................... 254674
Total number of repeats detected.............. 24
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 3 0 1 0 2 5 2 3 3 0 0
15 to 19 1 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 3 0 1 0 2 5 2 3 3 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 3 TA = 8
0 AG + 1 GA + 3 CT + 3 TC = 7
2 GT + 5 TG + 2 CA + 0 AC = 9
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298270|gb|AE003650.1|AE003650 Drosophila melanogaster genomic scaffold 142000013386055 section 43 of 63, complete sequence
Position Repeat Coverage Repeat
33219 AC * 16 29/32 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AG GA
42573 AT * 17 31/34 AT CT AT AT AT AT AT AT AT AT AT AT AT AT AT CC AT
45054 AC * 13 24/26 AC AC AC AC AC AC AC AC GC AC AC CC AC
70097 TA * 10 18/20 TA TA TA TT TA TA TA TA TA TG
82129 TA * 11 20/22 TA TA TA TA TA TA TA TA TA TT TG
107602 CA * 11 20/22 CA CT CA CA CA CA CA CA CA CA CG
119329 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AT AC AC AT
125555 GT * 10 18/20 GT GC GT GT GT GT GT GT GT TT
135138 CA * 12 22/24 CA CA CA CA CA CA CA CA CA GT CA CA
137638 AT * 10 18/20 AT AT AT AT AT AT AT AT AT TG
143576 TA * 18 33/36 TA TA CA TA TA TA TA TA TA TA TA TA TA TA AA TA TA TT
149773 TA * 12 22/24 TA TA TG TA TA GA TA TA TA TA TA TA
160969 CA * 12 22/24 CA CG CA CA CA CA CA CA CA AA CA CA
161377 AT * 11 20/22 AT AT AT AT AC AT AT AT AT TT AT
167849 TA * 13 24/26 TA TA TT AA TA TA TA TA TA TA TA TA TA
171725 CT * 11 21/22 CT CT CG CT CT CT CT CT CT CT CT
173249 CT * 10 19/20 CT CT CT CT CT CT CT CT CT CA
175266 GT * 12 22/24 GT GT GT GT GT TG GT GT GT GT GT GT
179822 TA * 34 62/68 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA TG TA TG TG CA TT
180497 CT * 10 18/20 CT CT CT CC CA CT CT CT CT CT
188570 GA * 12 22/24 GA GA GA GG GA GA GA GA GA GA AA GA
191023 AG * 10 18/20 AG AG AG AG AG AG AG AG AT GG
200162 TA * 10 18/20 TA TA AA TA TA TA TA TA TA TG
200360 AT * 10 19/20 AT AT AT AT AA AT AT AT AT AT
203214 TC * 10 18/20 TC TC AC GC TC TC TC TC TC TC
228710 CA * 10 18/20 CA AA CA CA CA CA CA TA CA CA
234152 AT * 11 20/22 AT AT AT AT AA AT AT AT AA AT AT
255120 CA * 10 18/20 CA CA CA CA CA CG CA CG CA CA
263550 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TA GG
-----------------------------------------------------------------------------------------
Total sequence length......................... 264581
Total number of repeats detected.............. 29
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 5 1 1 2 5 1 2 1 3 0 0
15 to 19 1 1 0 0 1 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 1 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 7 1 1 3 5 1 2 1 3 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 7 TA = 12
1 AG + 1 GA + 3 CT + 1 TC = 6
2 GT + 1 TG + 5 CA + 3 AC = 11
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298255|gb|AE003649.1|AE003649 Drosophila melanogaster genomic scaffold 142000013386055 section 42 of 63, complete sequence
Position Repeat Coverage Repeat
3295 AT * 10 19/20 AT AT AT AT AT AT AT AT AT GT
38333 GT * 10 19/20 GT GT GT GT GT GC GT GT GT GT
38758 AC * 12 22/24 AC CC AC AC AC AC AC AC AC AC AC AT
93053 TA * 11 20/22 TA TA TA TA CA TA TA CA TA TA TA
100918 AT * 13 24/26 AT AT GT AT GT AT AT AT AT AT AT AT AT
106028 GT * 10 18/20 GT GT GT GT GT GC GA GT GT GT
118957 AC * 11 20/22 AC AC AC AC AC AC AC AC TA AC AC
137776 AT * 11 20/22 AT AT AT AT AT AT AT AT AT GT TT
142419 TA * 10 18/20 TA TA TA TA TA TA CA TA TT TA
142522 AT * 17 31/34 AT AT AT AT AT AC AT AT AT AT AT AT AT AT AC AT TT
163091 GT * 10 19/20 GT GT GT GT GT GT GT GT GT CT
165769 AT * 12 22/24 AT AT AG TT AT AT AT AT AT AT AT AT
177249 TG * 12 22/24 TG TG TG TG TG TG TG TG TT TG TG TT
182325 GT * 13 25/26 GT GT GT GT GT GT GT GT GT GT GT GT GC
241692 TG * 10 18/20 TG TG TG TG TG TG TG TG TG CC
256413 AC * 10 18/20 AC AC AC AC AC AC AC AC GT AC
266392 AC * 12 22/24 AC AC AC AC AC AC AC AC TC AC AC AG
268668 AT * 12 22/24 AT AT TT AT AT AT AT AT AT GT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 275242
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 2 0 0 4 0 2 4 0 0 0 0
15 to 19 1 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 6 2 0 0 4 0 2 4 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
6 AT + 2 TA = 8
0 AG + 0 GA + 0 CT + 0 TC = 0
4 GT + 2 TG + 0 CA + 4 AC = 10
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298233|gb|AE003648.1|AE003648 Drosophila melanogaster genomic scaffold 142000013386055 section 41 of 63, complete sequence
Position Repeat Coverage Repeat
11229 TA * 10 18/20 TA TA TA TA TA GA TA TA TA TC
11806 AT * 12 22/24 AT AC AA AT AT AT AT AT AT AT AT AT
36357 AC * 11 20/22 AC AT AC AC CC AC AC AC AC AC AC
39343 CA * 10 18/20 CA CA TA CA CA CA CA CA CA TA
40439 TG * 10 19/20 TG TG CG TG TG TG TG TG TG TG
66732 TA * 10 18/20 TA TA TA TA TA TA TA TA TA CT
73241 AT * 10 18/20 AT AT AT AT AC AT AC AT AT AT
79412 AC * 10 18/20 AC AC CC AC AC TC AC AC AC AC
79623 TG * 14 26/28 TG CG TT TG TG TG TG TG TG TG TG TG TG TG
80308 TC * 10 18/20 TC TC TC TC TC TC TC TC TC GG
93225 CA * 11 20/22 CA CA CA CA CA CA CA CA CT GA CA
107174 TA * 10 18/20 TA TA AA TA TA TA TA TA TA TT
136033 TG * 10 18/20 TG TG TG TG TT TG TG TG TC TG
139042 TA * 10 18/20 TA TA TA TG TA TA TA TA TA TG
140882 AC * 11 20/22 AC GC AC AC AT AC AC AC AC AC AC
142990 CA * 16 30/32 CA CA CA CA CA CA CA CA CA CA CA CA CA CG TA CA
145317 CT * 11 20/22 CT CT GT CT CT CT CT CT CT CT TT
146102 CA * 12 22/24 CA TA CA CA CA CA CA CA CA CA CC CA
151223 TA * 16 29/32 TA TA TC TA TA GA TA TA TA TA TA TA TA TA TA TC
152808 CA * 10 18/20 CA CA CA CA CA CA CA CA CA TT
153749 AC * 12 22/24 AC AC AC AT AC AC AC AC GC AC AC AC
155112 AC * 10 18/20 AC AC AC AC AC AC AC AT AC AT
156732 TA * 11 20/22 TA TG TG TA TA TA TA TA TA TA TA
173885 AG * 10 18/20 AG AG AG CG AG AG AA AG AG AG
190076 TG * 12 22/24 TG TG TG TG TG TG TG TA TC TG TG TG
206476 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AG AC GC
206702 GT * 11 20/22 GT GT GT GT GT GT GT GT GT GA GA
226867 AT * 10 18/20 AT AT AT AT AA AT AT AT GT AT
231628 CA * 11 20/22 CA TA CA CA CA CA CA CA CG CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 240520
Total number of repeats detected.............. 29
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 5 1 0 6 5 4 1 1 1 0 0
15 to 19 0 1 0 0 0 1 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 6 1 0 6 6 4 1 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 6 TA = 9
1 AG + 0 GA + 1 CT + 1 TC = 3
1 GT + 4 TG + 6 CA + 6 AC = 17
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298216|gb|AE003647.1|AE003647 Drosophila melanogaster genomic scaffold 142000013386055 section 40 of 63, complete sequence
Position Repeat Coverage Repeat
34770 TA * 13 24/26 TA TA GA TA TA TA TA TA TA TA TA TA CA
40974 TA * 12 22/24 TA TA TA CA TA TA TA TA TA TA TA TC
44742 AT * 11 20/22 AT AG AT AT AC AT AT AT AT AT AT
54592 CA * 15 27/30 CA CA CA CA CA TA CA CA CA CA CA CA CA CA GG
88748 AT * 11 20/22 AT AT AT TT AT AT TT AT AT AT AT
180953 CT * 10 18/20 CT CT CT CT CT CT CT CT CT TA
187975 CT * 10 18/20 CT CT CT CT CT CT CT CT CT TA
189737 AT * 11 20/22 AT AT AT AT AG AT AT AG AT AT AT
193026 TA * 10 18/20 TA TA TA TA TG TA TA AA TA TA
206754 TA * 10 19/20 TA TA TA TA TA TA TA TA CA TA
213132 CT * 13 25/26 CT CT CT CA CT CT CT CT CT CT CT CT CT
226853 TC * 10 18/20 TC TA TC TC TC AC TC TC TC TC
234306 AG * 12 22/24 AG AG AG AG GG AG AG AG AG TG AG AG
240755 GT * 11 20/22 GT GT GT GA GT GT GT GT GT GT GC
251395 CA * 20 36/40 CA CA CA CA CA CA CA CA CA CA CA CA CG CA CA TA CA TA CA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 262205
Total number of repeats detected.............. 15
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 4 1 0 0 0 0 1 1 3 0 0
15 to 19 0 0 0 0 0 1 0 0 0 0 0 0
20 to 24 0 0 0 0 0 1 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 4 1 0 0 2 0 1 1 3 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 4 TA = 7
1 AG + 0 GA + 3 CT + 1 TC = 5
1 GT + 0 TG + 2 CA + 0 AC = 3
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298191|gb|AE003646.1|AE003646 Drosophila melanogaster genomic scaffold 142000013386055 section 39 of 63, complete sequence
Position Repeat Coverage Repeat
14587 TC * 18 33/36 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TG TG TG TC
14678 TG * 12 22/24 TG AG TG TG TG TG TG TG TG TG CG TG
18936 GT * 10 18/20 GT CT GT GT GT GT GT AT GT GT
103064 AT * 10 19/20 AT AT AT AT AT AT AT AT AT TT
127874 GA * 10 19/20 GA GA GA GG GA GA GA GA GA GA
139128 TG * 10 18/20 TG TG TG TG TG TG TG TG CG TC
139356 TG * 12 22/24 TG TG AG TG TG TG TG TG TG TG TG TA
149936 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CT CA CT
155248 GT * 11 20/22 GT GA GT GT GT GT GT GT GT GT GC
155319 AC * 10 18/20 AC AC AC AC AC AC GC TC AC AC
159448 AC * 14 26/28 AC AC AC TC AC AC AG AC AC AC AC AC AC AC
159680 TG * 10 18/20 TG GT TG TG TG TG TG TG TG TG
164368 TA * 10 18/20 TA TA TA TA TT TA TA TA TG TA
174620 TG * 11 21/22 TG TG TG TA TG TG TG TG TG TG TG
177439 TA * 11 20/22 TA TA TA TA TA TA TA TA TA TG TG
181243 CA * 10 18/20 CA CA CA CA AA CA CA TA CA CA
187417 TA * 11 20/22 TA TA TA TA TA TA TA TA TA CA TT
188952 GA * 11 20/22 GA CA GA GG GA GA GA GA GA GA GA
196550 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT TT GC
215202 CA * 17 31/34 CA CA CA CA CA CA CA CA CA CA CA AA CA TA CA CA CG
220208 TG * 11 20/22 TG TG TG TG TA TG TG TG TG TG GG
223148 GT * 21 38/42 GT AT GC GT GT GT GT GT GT GT GT GT GT GT AT GT GT GT GT GT AT
235637 GT * 10 18/20 GT GC GT GT GT GT GT GT GT AT
238981 AT * 10 18/20 AT AT AT AT AT AT AT GT AT AG
248021 TG * 10 18/20 TG GG TG TG TG TG TG TG CG TG
254104 TC * 10 18/20 TC TC TC TC TT TC TC TC TC TG
255589 AC * 16 29/32 AC AC GC CC AC AC AC AC AC AC AC AC AC AC AC AA
259640 TA * 10 18/20 TA TA TA TA TA TA TA TA GA AA
261917 AT * 15 28/30 AT AT AT AT AT AT TC AT AT AT AT AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 266295
Total number of repeats detected.............. 29
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 4 0 2 2 2 7 4 1 0 0 0
15 to 19 1 0 0 0 1 1 0 0 1 0 0 0
20 to 24 0 0 0 0 0 0 0 1 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 4 0 2 3 3 7 5 2 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 4 TA = 7
0 AG + 2 GA + 0 CT + 2 TC = 4
5 GT + 7 TG + 3 CA + 3 AC = 18
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298171|gb|AE003645.1|AE003645 Drosophila melanogaster genomic scaffold 142000013386055 section 38 of 63, complete sequence
Position Repeat Coverage Repeat
777 CA * 11 20/22 CA CG CA CA CA CA CA CA CA CT CA
10228 TG * 14 26/28 TG TG TG TG TG TG TG TG TG TG AG TG TG GG
50576 TA * 11 20/22 TA TA TA TA TA TA TG TA TA TA CA
77845 TG * 11 20/22 TG TG TC TG TG GG TG TG TG TG TG
86002 GT * 11 20/22 GT GT GT GT GT GT GT GT GC GT TT
89088 AG * 11 20/22 AG AG AG AG AG AG AG AG AG GA AG
130489 TG * 10 18/20 TG TT TG TG TG TG TA TG TG TG
147758 TG * 10 18/20 TG TG TG TG TA TG TG TG TA TG
155344 AC * 15 28/30 AC AA GC AC AC AC AC AC AC AC AC AC AC AC AC
162312 CA * 10 18/20 CA CA CA CA TA CA CA CA CA GA
165531 CA * 11 20/22 CA CT CA CT CA CA CA CA CA CA CA
166237 TA * 12 22/24 TA TA TA TA TA AA TA TA CA TA TA TA
176478 TG * 16 29/32 TG TG TT TG TG TG CG TG TG TG TG TG TG TG TG TA
179220 AT * 11 20/22 AT AC AT AT AT GT AT AT AT AT AT
198298 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG GG CG
201827 CT * 12 22/24 CT GT CT CT CT CT CT CT CC CT CT CT
212238 CA * 17 31/34 CA CA CA CA TA CA CA CA CA CA CG CA CA CA CA TA CA
214787 TG * 13 24/26 TG TG TG TG TG CG TG TG TG TG TG GG TG
225399 TA * 17 31/34 TA TA TA TA TG TA TA TA TA TA TA TA TA TA TA TG TT
233718 AC * 12 22/24 AC AC AG AC AC AC AC AC AC AC AC AA
246330 TA * 15 27/30 TA TA TA TA TA TA TA TA TA TA TA TA TA AG TT
258067 TC * 16 29/32 TC TC TC TC TC TC TC TC TC TC TC GC AC TC GC TC
-----------------------------------------------------------------------------------------
Total sequence length......................... 261527
Total number of repeats detected.............. 22
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 2 1 0 1 3 6 1 0 1 0 0
15 to 19 0 2 0 0 1 1 1 0 1 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 4 1 0 2 4 7 1 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 4 TA = 5
1 AG + 0 GA + 1 CT + 1 TC = 3
1 GT + 7 TG + 4 CA + 2 AC = 14
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298162|gb|AE003644.1|AE003644 Drosophila melanogaster genomic scaffold 142000013386055 section 37 of 63, complete sequence
Position Repeat Coverage Repeat
1693 AC * 17 31/34 AC AC AC TC AC AC AC AC AC AC AC AC AC AA GC AC AC
3600 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT GG GC
12863 GT * 11 20/22 GT GT GC GT GT GT GT GT GT GT TT
38290 AG * 15 28/30 AG AG AG AG AG AG AG AG AG AT AG AG GG AG AG
59176 TC * 10 18/20 TC GC TG TC TC TC TC TC TC TC
89912 AC * 13 24/26 AC AC AC AC AC AC AC GC AC AC GC AC AC
170962 TA * 11 20/22 TA TA AA CA TA TA TA TA TA TA TA
177837 TG * 10 18/20 TG TA TG TG TG TG TG TG TG TA
194152 TA * 11 20/22 TA TA TA TG TA TC TA TA TA TA TA
205429 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AC GG
207100 CA * 10 18/20 CA CA CA CA CA CA CA CT CA CG
209588 TA * 33 60/66 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT GA TA TA TA TA TA TA TC AA TA TA TT CA
210731 GA * 10 18/20 GA GA GA CC GA GA GA GA GA GA
245922 AT * 13 24/26 AT AT AT AT AT AT AT AG AT AT AT AT AC
250816 AT * 10 18/20 AT AT AC AT AT AT AT GT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 264851
Total number of repeats detected.............. 15
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 2 0 1 2 1 1 2 1 0 0 0
15 to 19 0 0 1 0 1 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 1 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 3 1 1 3 1 1 2 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 3 TA = 5
1 AG + 1 GA + 0 CT + 1 TC = 3
2 GT + 1 TG + 1 CA + 3 AC = 7
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298143|gb|AE003643.1|AE003643 Drosophila melanogaster genomic scaffold 142000013386055 section 36 of 63, complete sequence
Position Repeat Coverage Repeat
26200 TA * 10 18/20 TA TA TA TA TT TA TA TA TA TC
73196 AC * 11 20/22 AC AC AC AC AC TC AC AC AC AC AT
104430 AC * 16 30/32 AC AC AC AC AC AC AC AC AT AC AA AC AC AC AC AC
154703 TC * 21 39/42 TC GC AC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TG TC TC TC
159073 GT * 13 24/26 GT GT GT GT GC GA GT GT GT GT GT GT GT
159520 GT * 13 24/26 GT GT GT AT GT GT GT GT GT GT AT GT GT
176698 GT * 10 19/20 GT GT GT GT GT GT GT GT GT GC
226272 TG * 11 21/22 TG TG TG TG TG TG TG TG TG TG TC
234353 AT * 10 18/20 AT AT AT GT AT AT AT AT AT TT
-----------------------------------------------------------------------------------------
Total sequence length......................... 240197
Total number of repeats detected.............. 9
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 1 0 0 1 0 1 3 0 0 0 0
15 to 19 0 0 0 0 1 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 1 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 1 0 0 2 0 1 3 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 1 TA = 2
0 AG + 0 GA + 0 CT + 1 TC = 1
3 GT + 1 TG + 0 CA + 2 AC = 6
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298121|gb|AE003642.1|AE003642 Drosophila melanogaster genomic scaffold 142000013386055 section 35 of 63, complete sequence
Position Repeat Coverage Repeat
12732 AT * 10 18/20 AT GT AT AT AT AT AT AT GT AT
24647 TA * 17 31/34 TA TA TA AA TA TA TA TA TA TA TA TA TA TA TA GT TA
32639 CA * 11 20/22 CA CA CA CA CA CA CA CA CA TA GA
36067 CA * 10 19/20 CA CA CA CA CA CA CA CA CA CT
42628 CA * 11 20/22 CA CC AA CA CA CA CA CA CA CA CA
63882 TG * 13 25/26 TG TG TG TG TG TG TG TG TG TG TG TG TA
67079 AT * 13 24/26 AT AT AT AT AC AT AT AT AT AT TT AT AT
76996 TA * 12 22/24 TA TA TA TA TA TG TA TA GA TA TA TA
77322 TA * 11 20/22 TA TA TA TA TA TA TA CG TA TA TA
82294 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GG GT TT
85554 CA * 12 22/24 CA CA CT CA CA CA TA CA CA CA CA CA
86149 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TT TT
87743 CA * 15 27/30 CA CG CA CA CG CA CA CA CA CA CA CA CA CA CG
91978 TG * 18 33/36 TG TG TA TG TG TG TG TG TG TG TG TG TG TG TG TT TG CG
94227 GT * 13 24/26 GT GT GT GT GT GT GT GT GT AT GT CT GT
96177 CA * 14 26/28 CA CA CA CA CA CA CA CA CA CA CA CG CA GA
99380 AC * 12 22/24 AC AC AC AC AT AC AC AC AC AC AC TC
107483 TG * 11 20/22 TG TA TG TG TG TG TG TG TG TG GG
110098 TG * 13 24/26 TG TT TG CG TG TG TG TG TG TG TG TG TG
111205 CA * 10 18/20 CA CA CA CA CA CA CA CA CA AG
117004 CA * 15 27/30 CA CA CA CA CA CG CA CA CA CA CA CA CA CA TG
127209 TG * 10 18/20 TG TG TG TG TG TC TG AG TG TG
131505 AT * 12 22/24 AT AT AT AT AT AT AT AT AT AC AT AC
134527 TA * 12 23/24 TA TA TA TA TA TA TA AA TA TA TA TA
137459 TG * 10 18/20 TG CG TG TG TG TG TG TG TG CG
137642 CA * 13 24/26 CA CG CA CA CA CA CA CA CG CA CA CA CA
139213 CA * 13 25/26 CA CA CA CA CA CA CA CA CA CA CA CA CT
139589 CA * 11 20/22 CA AA AA CA CA CA CA CA CA CA CA
142358 GT * 16 29/32 GT GT GT GT GT TT GT GT GT GT GT GT GT GT TT GG
149719 AT * 11 21/22 AT AT AT AT AT AT AT AT AT AT AA
152581 TA * 10 19/20 TA TG TA TA TA TA TA TA TA TA
154302 TG * 11 20/22 TG TG TG TG TG TG TG TG TT TG TC
155395 TG * 16 29/32 TG TG TG TA TG TG TG TG TG TG TG TG TG TG GG TT
157099 TA * 13 24/26 TA TA TG TA TA TA TA TA TA AA TA TA TA
157317 CA * 11 20/22 CA CA CA CA CA CA CA CA CT CA CT
157740 CA * 21 38/42 CA CA CG CA CA CA CA CA CA CA CA CA CA CA CA CA AA CA CT CG CA
158199 CA * 12 22/24 CA CA CA AA CA CA CA CA CA CA CG CA
159825 CA * 10 18/20 CA CG CA CA CA CA CA AA CA CA
160019 CA * 10 18/20 CA CA CA CA CA CT CA CA AA CA
160989 GT * 13 24/26 GT GA GT GT GT GT GT GT GT GT GT GA GT
166447 GT * 11 21/22 GT GT GT GT GT GT GT GT GT TT GT
166490 TG * 10 18/20 TG GG TG TG TG TG TG TG GG TG
168043 TG * 12 22/24 TG TA TA TG TG TG TG TG TG TG TG TG
170553 AC * 13 25/26 AC AC AC AC AC AC AC AC AC AC AC GC AC
172372 CA * 11 20/22 CA TG CA CA CA CA CA CA CA CA CA
177909 GT * 11 20/22 GT GT GC AT GT GT GT GT GT GT GT
183486 CA * 12 22/24 CA CA CA CA CC CA CT CA CA CA CA CA
192556 TG * 10 18/20 TG TG TG TG TG TG CG TG CG TG
195352 TA * 11 20/22 TA TA TA TG TA TA TA TA AA TA TA
196084 AC * 10 18/20 AC GC AC AC AC AC GC AC AC AC
197088 TG * 16 29/32 TG TG TG TG TG TG TG TG TG TG TG TG TG TT TG GA
234716 AC * 13 24/26 AC AC AA AC TC AC AC AC AC AC AC AC AC
260578 GT * 11 20/22 GT GT GT GT GT GT GT GT GT GC CT
267238 AT * 10 18/20 AT AT AT AT AC AT AT AT AC AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 272070
Total number of repeats detected.............. 54
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 6 0 0 4 15 10 6 0 0 0 0
15 to 19 0 1 0 0 0 2 3 1 0 0 0 0
20 to 24 0 0 0 0 0 1 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 7 0 0 4 18 13 7 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 7 TA = 12
0 AG + 0 GA + 0 CT + 0 TC = 0
7 GT + 13 TG + 18 CA + 4 AC = 42
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298081|gb|AE003641.1|AE003641 Drosophila melanogaster genomic scaffold 142000013386055 section 34 of 63, complete sequence
Position Repeat Coverage Repeat
1100 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AC GT
16157 CA * 10 18/20 CA CA CA CA CA CA CA CA CA TT
27154 GT * 11 20/22 GT GT GT GT GT GT TT GT GT GT TT
42970 AT * 11 20/22 AT TT AT AT AA AT AT AT AT AT AT
72005 AC * 10 18/20 AC AC AC AC AC GC AC AC AC AT
81041 CA * 12 22/24 CA CA CA CA CA CA CG CA CA CA CC CA
90608 CA * 10 18/20 CA CA CA CA CA CA CA CA CA TT
90659 CA * 11 20/22 CA CA CA CA CA CA CA CG CA CA CC
90744 CA * 11 20/22 CA CA CG CA CA CA CA CA CT CA CA
118331 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TT TT
120298 AC * 10 18/20 AC AC AT AC AA AC AC AC AC AC
121996 CA * 10 18/20 CA CA CA CA CA TA CA CA CG CA
141367 TA * 26 47/52 TA TA TA TA TA TA TA AA TA TA TA TA TA TA TA TA TA TG TA TA TG TA TA TG CA TA
141609 AT * 11 20/22 AT CT AT AT AT AA AT AT AT AT AT
145720 AT * 11 20/22 AT AT AT AT AT TT AT AT AT AT AA
161476 AT * 15 27/30 AT AT AT AT AT AT AT AT AT AC AT AT AT AC GT
179497 TG * 16 29/32 TG TG TG TG TG TG TG TG TG TG TG TT TG TA TG CG
235196 CA * 10 18/20 CA CA CA CA CA CG CG CA CA CA
235828 TG * 10 19/20 TG TG TG TG TG TG TG TG CG TG
240306 TA * 10 19/20 TA TA TA TA TA TA TA TG TA TA
275770 AT * 10 19/20 AT AA AT AT AT AT AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 299556
Total number of repeats detected.............. 21
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 1 0 0 3 7 2 1 0 0 0 0
15 to 19 1 0 0 0 0 0 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 1 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 2 0 0 3 7 3 1 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 2 TA = 7
0 AG + 0 GA + 0 CT + 0 TC = 0
1 GT + 3 TG + 7 CA + 3 AC = 14
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298054|gb|AE003640.1|AE003640 Drosophila melanogaster genomic scaffold 142000013386055 section 33 of 63, complete sequence
Position Repeat Coverage Repeat
2900 TA * 11 20/22 TA CA TA TA TA TA TA TA TA TA TT
6636 TA * 12 22/24 TA AG TA TA TA TA TA TA TA TA TA TA
34230 TA * 15 28/30 TA TA TA TA AA TA TA TA TA TA TA TA TA TA TT
40592 TA * 17 31/34 TA AA TA TA TA TA TA TA TA TA TA TA TA AA TA TA TG
42283 TA * 12 22/24 TA TA TA TA CA TA TA CA TA TA TA TA
63784 AT * 10 18/20 AT AT AT AT AC AT GT AT AT AT
69365 TG * 10 18/20 TG TA TG TG TG TG TG TG TG TA
75310 TG * 10 18/20 TG TA TG TG TG TG TG TG TG TA
86822 TA * 18 33/36 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT AT
96848 GT * 11 20/22 GT GT GT GT TT GT GT GT GT GT AT
100655 TG * 12 22/24 TG CG AG TG TG TG TG TG TG TG TG TG
108135 CT * 16 29/32 CT CT CT CT CT CT CT CT CT CT CT CT GT AT CT CA
108507 TA * 12 22/24 TA TA TA TG CA TA TA TA TA TA TA TA
110269 AT * 15 28/30 AT AT AT AT AT AT AC AT AT AT AT GT AT AT AT
113676 AT * 10 18/20 AT AT AT AT AT AC AC AT AT AT
121750 TA * 10 19/20 TA TA TA TA TA TC TA TA TA TA
130087 AT * 10 18/20 AT AC AT AT AT AT AT AC AT AT
131962 AG * 13 24/26 AG AG AG AG AG GA AG AG AG AG AG AG AG
153040 TA * 16 29/32 TA TA CC TA TA TA TA TA TA TA TA TA TA TA TA TT
157193 AT * 10 18/20 AT AT AT TC AT AT AT AT AT AT
166563 TG * 10 18/20 TG TG TG TG TG TG TG TG TG GC
167360 TC * 12 22/24 TC GG TC TC TC TC TC TC TC TC TC TC
171071 TA * 10 18/20 TA CA TA TA TA AA TA TA TA TA
171564 AT * 10 18/20 AT AT AT AT AT AT AT AT AT GC
187737 AT * 12 22/24 AT AT AT AT AT AT AT AC AT AC AT AT
202717 TG * 10 19/20 TG TG TG TG TG TG TG TG TG TT
203370 AT * 11 20/22 AT AT AT AT AT AT AC AT AT AT TT
208839 TA * 10 18/20 TA TA TG TA TT TA TA TA TA TA
221423 GT * 12 22/24 GT GA AT GT GT GT GT GT GT GT GT GT
224767 AT * 10 18/20 AT AT AT AT AT AC AC AT AT AT
238917 CA * 10 19/20 CA CA CA CA CA CA CA CG CA CA
241335 GT * 11 20/22 GT GT GT GT GT GT GT GG GT GC GT
244647 CA * 13 24/26 CA CA CA CA CA CA CA GA CA CA CA CA CT
246892 CA * 10 18/20 CA CA CA CA CA CA CA TA TA CA
252056 CA * 10 18/20 CA CG CA CG CA CA CA CA CA CA
266039 GT * 12 22/24 GT GT GT GT GT GT AT GT GT GT GT GC
-----------------------------------------------------------------------------------------
Total sequence length......................... 267510
Total number of repeats detected.............. 36
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 8 7 1 0 0 4 5 4 1 0 0 0
15 to 19 1 4 0 0 0 0 0 0 0 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 9 11 1 0 0 4 5 4 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
9 AT + 11 TA = 20
1 AG + 0 GA + 1 CT + 1 TC = 3
4 GT + 5 TG + 4 CA + 0 AC = 13
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298000|gb|AE003639.1|AE003639 Drosophila melanogaster genomic scaffold 142000013386055 section 32 of 63, complete sequence
Position Repeat Coverage Repeat
18220 TA * 11 20/22 TA TA TA TA TA TA TA TA TA TT AA
27494 AT * 10 18/20 AT AT AC AT AT AT AT AC AT AT
37465 CA * 10 18/20 CA CG CA CA CA CA CA CA TA CA
37679 AG * 10 18/20 AG AG AG AG AG AG AG AG AT TG
49506 AT * 17 32/34 AT AT CT AT AT AT CT AT AT AT AT AT AT AT AT AT AT
70510 AC * 11 20/22 AC AC AC AG AC AC AC GC AC AC AC
84216 AT * 10 19/20 AT AT AT AT AT AT AT AT AT AN
98883 CA * 10 18/20 CA CA CA CA CC CA CA CA CG CA
114282 AT * 10 19/20 AT AT AT AT AT AT AC AT AT AT
127005 TG * 10 19/20 TG TG TG TG TG TG TG TG TG TT
198660 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC CC AC AA
200059 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CG CG CA
201190 TC * 22 40/44 TC TC TT CC TC TC TC TC TC TC TC TC TC TC TC TC TG TC TC TC GC TC
202585 TG * 14 26/28 TG TG TG TG TG TG TG TG TG TG TG TG TT TT
213154 TA * 10 18/20 TA TA TA TA TA TA TG TA CA TA
214620 TG * 11 21/22 TG TG AG TG TG TG TG TG TG TG TG
241250 AT * 12 22/24 AT GT AT AT AT AT AT AT AT AT AT TT
-----------------------------------------------------------------------------------------
Total sequence length......................... 261590
Total number of repeats detected.............. 17
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 2 1 0 2 3 3 0 0 0 0 0
15 to 19 1 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 1 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 2 1 0 2 3 3 0 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 2 TA = 7
1 AG + 0 GA + 0 CT + 1 TC = 2
0 GT + 3 TG + 3 CA + 2 AC = 8
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7297983|gb|AE003638.1|AE003638 Drosophila melanogaster genomic scaffold 142000013386055 section 31 of 63, complete sequence
Position Repeat Coverage Repeat
6612 CT * 10 18/20 CT CT CT CT CT CT AT CA CT CT
11514 CA * 16 29/32 CA CA CA CA CA CA CA CA CA CA CA AA CA CA AA CG
13969 CA * 10 18/20 CA CA TA CA TA CA CA CA CA CA
15803 AC * 10 18/20 AC AC AC AC AC AC AC AC AT TC
19097 TG * 13 24/26 TG TG TG GG CG TG TG TG TG TG TG TG TG
21757 CA * 11 20/22 CA CA CT CG CA CA CA CA CA CA CA
25937 AC * 12 23/24 AC AG AC AC AC AC AC AC AC AC AC AC
26116 CA * 13 25/26 CA CA CA CA CA CA CA CA CA CA CA CA CT
26280 TG * 10 18/20 TG TG TA TG TG TG TG TG TG AG
30165 AC * 11 20/22 AC AC AC AC AT AC AA AC AC AC AC
35100 CA * 14 26/28 CA CA CA CA CA CA CA CA CA CA CA CA CA TG
37494 CT * 12 22/24 CT CT CT CT CT AT CT CT CT CT TT CT
42935 GT * 11 20/22 GT GT GT GT GT GT GT GT GT GG GC
62959 TA * 10 19/20 TA TA TA TA TA TA CA TA TA TA
63535 AT * 16 30/32 AT AC CT AT AT AT AT AT AT AT AT AT AT AT AT AT
65534 AG * 10 18/20 AG AG AG AG AG AG AG AG AG CT
72537 AG * 10 18/20 AG AG AG AG AG AG AG AG AG CT
73995 AG * 10 18/20 AG AG AG AG AG AG AG AG AG CT
83419 CT * 10 18/20 CT CT CT CT CT CT CT CG CA CT
84003 AC * 10 18/20 AC AA AC GC AC AC AC AC AC AC
92623 TG * 14 26/28 TG TG TC TG TG TG TG TG TG TG TG TG TG CG
94843 TC * 11 20/22 TC CC TC TC TC TC TC TC TC TC TT
95110 CA * 13 24/26 CA CA CA CA CA CA CG CA CA CA CA CA AA
101411 CA * 13 24/26 CA CA CA AA CA CA CA CA CA CA TA CA CA
104659 CA * 14 26/28 CA CA CA CA CA CA CA CA CA CA CA CA CA TG
105128 AT * 10 18/20 AT AT AT AT AT AC AT AC AT AT
105650 CA * 12 22/24 CA CA CA CA CA CA CT CT CA CA CA CA
117010 TG * 11 20/22 TG TG TA TG TG TG TG TG TG TA TG
117203 CA * 12 22/24 CA TA CA CA CG CA CA CA CA CA CA CA
118727 GT * 13 24/26 GT GT GT GT GT GT GT AT GT GT GG GT GT
120238 AG * 10 18/20 AG AG AG AG AG AG AG AG AG GT
127698 AC * 10 18/20 AC AC AC AC AC AC GC TC AC AC
128637 CA * 10 19/20 CA CA CA CA CA CA CA CA CA CC
130801 AG * 10 18/20 AG AG AG GG AG AG AG AG AG CG
155442 TA * 10 18/20 TA AA TA TA TA TA TA TG TA TA
158474 GT * 11 20/22 GT GT AT GT GT GT GT GA GT GT GT
165274 TG * 11 20/22 TG GG TG TA TG TG TG TG TG TG TG
166217 AC * 10 18/20 AC AC AC AC AC AC AC AG GC AC
167391 GA * 11 20/22 GA GA GA GA GA GA GA GA GA GT AA
168790 TC * 10 18/20 TC TT TC TC TC TC TC TC TT TC
183899 CA * 12 22/24 CA CA CT CA CA CA CA CA CA CA GA CA
203267 AT * 12 22/24 AT AT AT AT AA AT AT AT AG AT AT AT
203938 TG * 12 22/24 TG TG GG TG GG TG TG TG TG TG TG TG
203964 TG * 10 18/20 TG TG TG TG TG TG AG TG TG GG
231972 TA * 11 20/22 TA TA TA TC TA TA TA TA TA TA TC
-----------------------------------------------------------------------------------------
Total sequence length......................... 253648
Total number of repeats detected.............. 45
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 3 5 1 6 11 7 3 2 3 0 0
15 to 19 1 0 0 0 0 1 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 3 5 1 6 12 7 3 2 3 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 3 TA = 6
5 AG + 1 GA + 3 CT + 2 TC = 11
3 GT + 7 TG + 12 CA + 6 AC = 28
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7297962|gb|AE003637.1|AE003637 Drosophila melanogaster genomic scaffold 142000013386055 section 30 of 63, complete sequence
Position Repeat Coverage Repeat
10389 GT * 11 20/22 GT GT GT GT GT GT GT GT GT GC GA
13828 CA * 12 22/24 CA CA GA CA CA CA CA CA CA CA CA GA
14762 AT * 10 18/20 AT AT AT AT AT AT AT AT AT TG
21017 TA * 10 18/20 TA TA TA AA TA TA TA AA TA TA
34744 CA * 10 19/20 CA CA CA CA CA CA CA CA CA CT
43946 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CT CT
84126 TG * 10 18/20 TG TG TG TG TA TG TT TG TG TG
104517 TG * 10 19/20 TG TG TG TG TG TG TG TG TG AG
109967 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AG TT
111009 AC * 10 18/20 AC AC AC AC GC TC AC AC AC AC
116408 AC * 10 18/20 AC GC AC AC AC AC AC AC AC AA
120209 AG * 15 27/30 AG AG AG AG AG AG AG AG AG AG AG AG AG CG GT
122034 GT * 11 20/22 GT GT GT GT GT GT GA GT GT GG GT
124662 TG * 12 22/24 TG AG TG TG TG TA TG TG TG TG TG TG
126957 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CA AT
128119 AC * 12 22/24 AC AA AT AC AC AC AC AC AC AC AC AC
129450 TG * 10 18/20 TG TG TG TG TG TG TG TG TT TA
136348 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA GA GA
138211 TA * 11 20/22 TA TA CT TA TA TA TA TA TA TA TA
138836 TG * 10 18/20 TG TA TG TG TG TG TG TG TG TA
147001 TG * 10 18/20 TG TA TG TG TG TG TG TG TG TA
154207 CT * 16 29/32 CT CC CT CT CT CT CT CT CT CT CT CT CT CT GG CT
154811 TA * 11 20/22 TA TA TA TA TA TA TA TA TA TG TG
155030 CA * 14 26/28 CA CT CA CA CA AA CA CA CA CA CA CA CA CA
157727 CA * 12 23/24 CA CA CC CA CA CA CA CA CA CA CA CA
160816 TG * 10 18/20 TG TG TT TG TG TG TG TG CG TG
165317 GT * 12 22/24 GT GT GT TT GT GT GT GA GT GT GT GT
166214 TG * 13 25/26 TG TG TG TG TG TG TG TG TG TG TT TG TG
171625 TG * 10 18/20 TG TG TG TG TG TG GG TG TG TC
172074 TG * 10 18/20 TG TG TG TG TG TG TG TG TA TT
173277 CA * 10 18/20 CA CA CA CA CA CA CA CT CA AA
175721 TG * 11 21/22 TG TG TT TG TG TG TG TG TG TG TG
175995 GT * 16 29/32 GT GT GT GT GT AT GT AT GT GT GT GT GT GT GT GC
176843 AC * 10 18/20 AC AC AC AC AC AT GC AC AC AC
176881 AT * 10 18/20 AT AT AT AT GT GT AT AT AT AT
180602 CA * 10 18/20 CA CT CG CA CA CA CA CA CA CA
193233 GT * 11 20/22 GT AA GT GT GT GT GT GT GT GT GT
193359 CA * 11 20/22 CA CA CA CA CA CA GA CA CG CA CA
193770 TG * 10 18/20 TG TG TG TT AG TG TG TG TG TG
204185 AC * 13 24/26 AC AG AC AC AC AC AC AC AC AC AC AC AT
205987 CA * 12 22/24 CA CA TA GA CA CA CA CA CA CA CA CA
213267 CA * 11 20/22 CA CA CT GA CA CA CA CA CA CA CA
214899 CA * 10 18/20 CA CA CA CT CA CA CA CA CA GA
220242 AC * 13 24/26 AC CC AC AC TC AC AC AC AC AC AC AC AC
223814 AT * 10 18/20 AT AT AT AT AT AT AT AG AA AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 224205
Total number of repeats detected.............. 45
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 3 0 0 6 13 12 4 0 0 0 0
15 to 19 0 0 1 0 0 0 0 1 0 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 3 1 0 6 13 12 5 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 3 TA = 7
1 AG + 0 GA + 1 CT + 0 TC = 2
5 GT + 12 TG + 13 CA + 6 AC = 36
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7297938|gb|AE003636.1|AE003636 Drosophila melanogaster genomic scaffold 142000013386055 section 29 of 63, complete sequence
Position Repeat Coverage Repeat
48652 AT * 10 18/20 AT AT AT AT GT AC AT AT AT AT
59928 GT * 10 18/20 GT AT GA GT GT GT GT GT GT GT
62311 AT * 10 18/20 AT AA AT AT AT AT AT AT AT AG
107627 CT * 10 19/20 CT CT CT CT CT CT CT CT CT GT
107780 TA * 11 20/22 TA TA TA CA TA CA TA TA TA TA TA
110229 AG * 13 24/26 AG AG AG AG AG AG AG AG AG AG AG CA AG
112644 GT * 25 46/50 GT GT GT GT GT GT GT GT GT GT GT GC GT GT GT GT GT GT GT GT GT GT GT GG TC
125831 TG * 26 47/52 TG CC TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TT GT
126642 GT * 11 20/22 GT GG GT GT GT GT GT GT GT GT GA
133036 CA * 14 26/28 CA CA CA CA CA CA CA CA CA CA CA CG GA CA
135012 AT * 11 20/22 AT AT GT AT AT AT AT AA AT AT AT
135725 GT * 20 36/40 GT GT AT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT TG GG
142953 CA * 10 18/20 CA CT CA CA CA CA CA CA CA CG
147938 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC AC CA AC
148348 GA * 13 24/26 GA GA GA GA GA TG GA GA GA GA GA GA GA
148566 CT * 10 18/20 CT CT CT CT CT AT GT CT CT CT
151835 GT * 13 24/26 GT TT GT GT GT GT GT GT GT GT GT GT GG
168612 AC * 16 29/32 AC AA AC GC AC AC AC AC AC AC AC AC AC AC AC AG
170012 CA * 17 31/34 CA CA CA CA CA CA CA CA CA CA CA CA CA GA GA CA AA
170983 AC * 11 20/22 AC TC AC AC AC AC AC AC AC AC AA
178327 CT * 10 18/20 CT AT CT CT CT CT CT CT CT TT
204786 TA * 10 18/20 TA TA TA TA TA TA TA TA TA CT
220259 CT * 10 18/20 CT CT CT CT CT CT CT CT CT TC
220436 GT * 11 20/22 GT GT GT GT GT GT GT GT GT GT CC
225865 GT * 13 24/26 GT GT GT AT GT GT GT GT GT GT GT GT GG
-----------------------------------------------------------------------------------------
Total sequence length......................... 245782
Total number of repeats detected.............. 25
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 2 1 1 2 2 0 5 0 4 0 0
15 to 19 0 0 0 0 1 1 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 1 0 0 0 0
25 to 29 0 0 0 0 0 0 1 1 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 2 1 1 3 3 1 7 0 4 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 2 TA = 5
1 AG + 1 GA + 4 CT + 0 TC = 6
7 GT + 1 TG + 3 CA + 3 AC = 14
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7297915|gb|AE003635.1|AE003635 Drosophila melanogaster genomic scaffold 142000013386055 section 28 of 63, complete sequence
Position Repeat Coverage Repeat
34986 TA * 11 20/22 TA TA TA TA TA TA CA CA TA TA TA
54307 CA * 16 29/32 CA CA CA CA CA CA CA CA AA CA CA CG CA CA CG CA
62174 GT * 10 18/20 GT GT GT GT GT GT GT AT TT GT
62196 GT * 11 20/22 GT GT GT GT TT GT GT TT GT GT GT
84528 TA * 10 18/20 TA TA TA TT TA TA TA TA TA TT
96787 TC * 10 18/20 TC TC TC GC TC TC TC TC AC TC
114712 AT * 12 22/24 AT AT AT AT AG GT AT AT AT AT AT AT
116617 TG * 12 22/24 TG TG TG TG TG TG AG TG GG TG TG TG
123175 TG * 10 18/20 TG TG TA TG TG TG TG TG TG GG
140374 TA * 10 18/20 TA TA TA TA CA TA AA TA TA TA
143456 AC * 11 21/22 AC AC AC AC AC AC AC AC AC AT AC
150979 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA CT AA
155118 GT * 16 29/32 GT AT GC GT GT GT GT GT GT GT GT GT GT GT GT GA
157339 TG * 12 22/24 TG TG TG TG TG TG AG TG TG AG TG TG
157383 GT * 15 28/30 GT GT GT GT GT GT GT GT GT GT GT GT GT GG GG
163604 TG * 12 23/24 TG TG TG TG TG TG TG TG TG TA TG TG
165644 TG * 11 20/22 TG TT TG TG TG TG TG TG TG TC TG
172597 TG * 11 20/22 TG TA TC TG TG TG TG TG TG TG TG
178794 TA * 10 18/20 TA CA TA TA TA TA TA TA TA TT
187319 TG * 21 38/42 TG TG TT TG TG TG TG TG TG TG TG TG TG TG TG TG CG TG TG TC TT
188399 GT * 20 36/40 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GA GT GC AG
192179 GT * 10 18/20 GT GT GT TT GT GT GT GT GT GC
194006 CA * 10 18/20 CA CC CA CA CA CA CA CA CA AA
197396 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AT TC
199094 CT * 12 22/24 CT CT CT CT CT CT CT CT CT TG CT CT
199125 TG * 13 24/26 TG TC TG TG TG TG TG TG TG TG TG TG CG
203319 TG * 10 18/20 TG CG TG TG TG TG TG TG CG TG
206183 TG * 10 18/20 TG AA TG TG TG TG TG TG TG TG
207193 GT * 10 18/20 GT GT GT GT GT GT GT GG GT TT
207299 GA * 17 31/34 GA TA GA GA GA CA GA GA GA GA GA GA GA GA GA GA GG
216480 GT * 10 18/20 GT GT GT GT GT GT GT GT GT AC
229031 CA * 11 21/22 CA CA CA CA CA CA CA CA CA CT CA
232245 TG * 12 22/24 TG TG TG TG TA TG TG TG CG TG TG TG
268958 CA * 10 18/20 CA CA CA CA CA CA CA CA CA GT
269877 AT * 10 18/20 AT TA AT AT AT AT AT AT AT AT
270136 CA * 10 18/20 CA CC CA CA CC CA CA CA CA CA
276440 AG * 10 18/20 AG AG AG AG AG AG AC AG AG CG
285321 TG * 11 20/22 TG TA TG TG TG TG TG TG TG TC TG
285395 TG * 11 20/22 TG TA TG TG TG TG TG TG TG TG TA
296557 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA CA TG
296788 AC * 10 18/20 AC AC TC AC AC AC AC TC AC AC
302699 CA * 11 20/22 CA CC AA CA CA CA CA CA CA CA CA
302899 TC * 10 18/20 TC TC TC TC TT TC TA TC TC TC
-----------------------------------------------------------------------------------------
Total sequence length......................... 307911
Total number of repeats detected.............. 43
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 4 1 0 3 7 12 5 2 1 0 0
15 to 19 0 0 0 1 0 1 0 2 0 0 0 0
20 to 24 0 0 0 0 0 0 1 1 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 4 1 1 3 8 13 8 2 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 4 TA = 6
1 AG + 1 GA + 1 CT + 2 TC = 5
8 GT + 13 TG + 8 CA + 3 AC = 32
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7297877|gb|AE003634.1|AE003634 Drosophila melanogaster genomic scaffold 142000013386055 section 27 of 63, complete sequence
Position Repeat Coverage Repeat
15268 TA * 11 20/22 TA TA TA TA TA TA TA TA GA TA GA
30941 GT * 11 20/22 GT AT GT AT GT GT GT GT GT GT GT
38925 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AA GC AC
44880 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT GT AC
48558 AT * 10 18/20 AT AT CT AT AT AT AT AT AT AC
50194 CA * 10 18/20 CA CA CA CC CA TA CA CA CA CA
61625 CA * 10 18/20 CA AA CA CA CA CA CA CA TA CA
70682 CA * 16 29/32 CA CA CC CA CG CA CA CA CA CA CA CA CA CA AA CA
77634 GT * 11 20/22 GT GT GT CT GT GT GT GC GT GT GT
86903 TA * 10 18/20 TA TA TA TT TA TA TA TA TA CA
90321 TG * 10 19/20 TG TG TG TG CG TG TG TG TG TG
91100 GT * 13 24/26 GT GT GT GT GG GT GT GT GG GT GT GT GT
93960 CA * 10 18/20 CA AT CA CA CA CA CA CA CA CA
95283 AT * 11 20/22 AT AT AT AC AT AC AT AT AT AT AT
101532 AC * 10 18/20 AC AC AC AC AC AA GC AC AC AC
104084 CA * 14 26/28 CA CA CT CG CA CA CA CA CA CA CA CA CA CA
113497 AT * 11 20/22 AT AA AT CT AT AT AT AT AT AT AT
139944 AT * 10 18/20 AT AT AC AT AT AT AT AT AC AT
141326 AC * 11 20/22 AC AC AC AC AC AC AC AC AC GC AG
141395 CA * 11 21/22 CA CA CA CA CA CA CA CA CA CA CG
144681 TG * 10 18/20 TG TG TG AG TG TG TG TG TG CG
144723 AG * 12 22/24 AG AA CG AG AG AG AG AG AG AG AG AG
145197 AT * 10 18/20 AT AT AT CT AT AT AC AT AT AT
145222 TG * 12 22/24 TG TA TG TG TG TG TG TG TG TG TG GG
146175 TC * 12 22/24 TC GC TC TC TG TC TC TC TC TC TC TC
153557 TC * 12 22/24 TC TC TT TC TC TT TC TC TC TC TC TC
179518 GT * 12 22/24 GT GT GT GC GT GT GT GT GT GT GT GC
197861 AT * 11 20/22 AT AT AT GT AT AT GT AT AT AT AT
211800 TA * 10 19/20 TA TA TA TA TA TA TA TA AA TA
220438 AG * 12 23/24 AG AG AG AG AG AG AG CG AG AG AG AG
230237 AT * 11 20/22 AT AC AT AC AT AT AT AT AT AT AT
231696 GA * 13 24/26 GA GA GA GA AA CA GA GA GA GA GA GA GA
-----------------------------------------------------------------------------------------
Total sequence length......................... 264752
Total number of repeats detected.............. 32
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 7 3 2 1 3 5 3 5 2 0 0 0
15 to 19 0 0 0 0 0 1 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 7 3 2 1 3 6 3 5 2 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
7 AT + 3 TA = 10
2 AG + 1 GA + 0 CT + 2 TC = 5
5 GT + 3 TG + 6 CA + 3 AC = 17
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7297859|gb|AE003633.1|AE003633 Drosophila melanogaster genomic scaffold 142000013386055 section 26 of 63, complete sequence
Position Repeat Coverage Repeat
5168 GT * 11 21/22 GT GT GT GT GT GT GT GT GT GT TT
18644 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT GC CT
22539 AT * 10 18/20 AT AC AT AT AT AT AT AT AT TT
23935 TG * 12 22/24 TG TG CG TG TG TG TG TG TG TC TG TG
25837 CA * 11 20/22 CA CA CA CA CA CA CA CA AA TA CA
43444 AT * 10 18/20 AT AT AT GT AT AT CT AT AT AT
60931 CA * 10 18/20 CA CA CA CA CA CA CT CA CT CA
70444 GT * 10 18/20 GT GT GT GT GT GC GT GT GG GT
74164 TG * 12 22/24 TG GG TG TG TG TG TG TG TG TG GG TG
81267 CA * 10 18/20 CA CA CA CA CA CA CA CA CA TG
92024 TG * 11 21/22 TG TG TG TG TG TG TG TG TG TG TA
92109 TG * 10 19/20 TG TG TG TG TG TG TG TA TG TG
116334 CA * 10 18/20 CA AA CA CA CA CA CA CA CT CA
117272 TG * 11 20/22 TG GA TG TG TG TG TG TG TG TG TG
122308 TG * 12 22/24 TG TG TG AG TG TG TG TG TG TG TG GG
126187 AC * 10 18/20 AC AC AC AC AC GC AC AC AC AA
131326 CA * 12 22/24 CA CA CC CA CA CA CA CA CA CA CA CT
139700 CA * 13 24/26 CA CA CA CC CA CA CA CA CA CA CA CC CA
140052 GT * 16 29/32 GT GT GT CT GT GT GT GT GT GT GT GT GT AT GT AT
147386 GT * 10 18/20 GT GT GT GT GC GT GT GT TT GT
149547 TG * 11 20/22 TG TG AA TG TG TG TG TG TG TG TG
155459 CT * 10 18/20 CT CT CT CT CT CT CT CT CT TA
162482 CT * 10 18/20 CT CT CT CT CT CT CT CT CT TA
163640 TG * 10 19/20 TG TG TG TG TG TG TC TG TG TG
178894 TG * 13 24/26 TG TG TG TA TG TG TG TG TG CG TG TG TG
190836 CA * 10 18/20 CA CA CG CA CA CA CA CA CA CG
197023 AC * 13 24/26 AC AC AC AG AC AC AC AC AC AC AC AC AG
197223 TG * 10 19/20 TG TG TG TG TG TG TG TG TG GG
198652 GT * 10 18/20 GT GT GT GT GT GT TG GT GT GT
200600 AT * 12 22/24 AT AC AT AT AT AT AT AT AT AT AT GT
204341 CA * 11 20/22 CA CA CA CA CA CA CC CA CA CA GA
213082 TG * 10 18/20 TG TG TG TG TG TG TG TG TT TC
213536 CA * 17 32/34 CA CA TA CA CA CA AA CA CA CA CA CA CA CA CA CA CA
220687 AG * 12 22/24 AG AA AG AA AG AG AG AG AG AG AG AG
223262 AC * 13 24/26 AC AC GC AC AC AC AC AC AC AC AC AG AC
226696 AC * 10 18/20 AC TC TC AC AC AC AC AC AC AC
242682 GT * 10 18/20 GT GT GT TT GT GT GT GC GT GT
247964 CA * 10 19/20 CA CA CA CA CA CA CA AA CA CA
248810 GA * 19 35/38 GA AA GA GA GA CA GA GA GA GA GA GA GA GA GA GA GA GA CA
256652 TA * 12 23/24 TA TA TA TA TA TA TA TG TA TA TA TA
261098 GT * 10 18/20 GT GC GA GT GT GT GT GT GT GT
262477 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 266057
Total number of repeats detected.............. 42
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 1 1 0 4 9 12 7 0 2 0 0
15 to 19 0 0 0 1 0 1 0 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 1 1 1 4 10 12 8 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 1 TA = 4
1 AG + 1 GA + 2 CT + 0 TC = 4
8 GT + 12 TG + 10 CA + 4 AC = 34
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7297846|gb|AE003632.1|AE003632 Drosophila melanogaster genomic scaffold 142000013386055 section 25 of 63, complete sequence
Position Repeat Coverage Repeat
45 AT * 11 20/22 AT AT AT AT AT AT AT AT AT TT CT
4856 AT * 12 22/24 AT AT AT AT AT AT AT AT AT AT AT TC
27392 TA * 10 18/20 TA TA TA TA CA TA TA TA TA TC
34129 TG * 11 21/22 TG AG TG TG TG TG TG TG TG TG TG
38303 TA * 12 23/24 TA TA CA TA TA TA TA TA TA TA TA TA
46852 TG * 13 25/26 TG TG TG TG TG TG TG TG CG TG TG TG TG
48689 GT * 13 24/26 GT GT GC GT GT GT AT GT GT GT GT GT GT
49029 GT * 10 18/20 GT GT AT CT GT GT GT GT GT GT
49130 AC * 10 18/20 AC AC AC AC AC AC AG AC AC AA
49173 AC * 15 28/30 AC GC AC AC AC AC AC AC AC AC AC AC AC AC GC
49537 AC * 10 18/20 AC AC AC AC AC AC AC AC AT AT
67909 TA * 12 22/24 TA CA TT TA TA TA TA TA TA TA TA TA
94164 CA * 16 29/32 CA CT CA CA AA CA CA CA CA CA CA CA CA CA AA CA
108766 TA * 15 27/30 TA TA CA TA CA TA TA TA TA TA TA TA TA TA AA
109478 GT * 11 20/22 GT GT CT GA GT GT GT GT GT GT GT
112944 TA * 10 18/20 TA TA TA TA TA TA TG TA TC TA
115354 AC * 10 18/20 AC AC AC AC AC TC AC AC TC AC
117895 TG * 15 27/30 TG TA TG TG TG TG TG TG TG TG AG TG TG TG CG
120579 TG * 16 30/32 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TT TT
128009 GT * 11 20/22 GT GT AT GT GT GT GA GT GT GT GT
131700 GT * 10 18/20 GT AC GT GT GT GT GT GT GT GT
132008 CT * 10 18/20 CT CC CT CT CT CT CT TT CT CT
133540 GT * 10 18/20 GT GT GT GT GT GT GT GT GC GA
133748 CA * 10 18/20 CA TT CA CA CA CA CA CA CA CA
147918 GT * 10 18/20 GT GT GT GT GA GT GT GT GT TT
147976 CA * 10 18/20 CA CA CA CA CA CG CA CA GA CA
154926 TA * 10 18/20 TA TA TA TA TA TA TA CG TA TA
176482 AT * 11 21/22 AT AT AT AT AT AT AT AT AT TT AT
177527 CA * 10 18/20 CA CA CA CA GA CA CA CA TA CA
181379 AC * 10 18/20 AC AC AC AC AC AC AC AC AT AA
181592 GT * 12 22/24 GT AT GT GT GC GT GT GT GT GT GT GT
188904 AG * 13 24/26 AG AG AC AG AA AG AG AG AG AG AG AG AG
220476 GT * 10 18/20 GT GA AT GT GT GT GT GT GT GT
222297 CA * 13 24/26 CA AA CC CA CA CA CA CA CA CA CA CA CA
224260 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG CC
234349 GT * 18 33/36 GT GT GC GT GT GT GT GT GT GT GT GT GT GT CT GT GT GA
242184 TG * 13 24/26 TG GG TG TG TG TG TG TG TG TG TG TG TT
-----------------------------------------------------------------------------------------
Total sequence length......................... 244279
Total number of repeats detected.............. 37
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 5 1 0 4 4 4 9 0 1 0 0
15 to 19 0 1 0 0 1 1 2 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 6 1 0 5 5 6 10 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 6 TA = 9
1 AG + 0 GA + 1 CT + 0 TC = 2
10 GT + 6 TG + 5 CA + 5 AC = 26
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7297810|gb|AE003631.1|AE003631 Drosophila melanogaster genomic scaffold 142000013386055 section 24 of 63, complete sequence
Position Repeat Coverage Repeat
5593 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA CA TG
6486 TA * 10 18/20 TA TA TA TA CA TA AA TA TA TA
7008 TA * 10 18/20 TA TA TC TA TA TG TA TA TA TA
32959 TG * 12 22/24 TG TG TG TG TG CG TG TG TG TT TG TG
118014 CA * 17 31/34 CA CA CA CA CA CA CA CA CA CA GG CA CA CA GA CA CA
120621 GT * 13 24/26 GT GT GT GT AT GT GT GT GT GT GT GT GC
136693 TA * 10 18/20 TA TA TA TA TA TA TA TT TA TT
147775 AC * 10 18/20 AC AA AC AA AC AC AC AC AC AC
150366 AC * 10 18/20 AC AC AC AC AC AC AC AC TC AA
150892 AC * 10 18/20 AC AC AG AC AC AA AC AC AC AC
151767 CA * 10 19/20 CA CA CA CA CA CA CA CA CC CA
155850 TA * 11 20/22 TA TA TT TA TA TA TA TA CA TA TA
157828 GT * 17 32/34 GT GT GT GT GT GT GT GT GT GT GT CT GT GA GT GT GT
158779 AC * 16 29/32 AC AC AC AA AC AC TC AC AC AC AC AC AC AC AC GC
167538 TG * 13 24/26 TG TG AG TG TG TG TG TG TG TG TG TG CG
173871 CA * 10 18/20 CA CA CA CA AG CA CA CA CA CA
179299 CA * 13 24/26 CA CA CA CA CA CA AA CA CA CA CA CA TA
187549 GT * 20 36/40 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GA CA GG
190141 CA * 13 24/26 CA CC AA CA CA CA CA CA CA CA CA CA CA
191056 TG * 16 29/32 TG TG TG TG TG TG TG TG TG TG TG TG TG AG CG AG
192222 TG * 11 20/22 TG TG CG TG TG TG TT TG TG TG TG
193016 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC GC AA AC
194667 CA * 12 22/24 CA CA CA CA CA CA CA CA CT GA CA CA
197030 TG * 10 18/20 TG TC TG TG TG TG TG TG TG TC
197376 AC * 11 20/22 AC AC AG AC AC AC AC AC AC AA AC
197474 GT * 11 20/22 GT CT GT GT GT CT GT GT GT GT GT
202345 GT * 10 18/20 GT GT GT GT GT GT GT GT GT AC
234816 AT * 11 20/22 AT AT AT AT AT AT GT AT GT AT AT
240219 AT * 12 22/24 AT AT AT AT AC AT AT AT AT AT GT AT
240276 TG * 12 22/24 TG TG TG TT TG TG TG TG TG TG AG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 261329
Total number of repeats detected.............. 30
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 4 0 0 5 6 5 3 0 0 0 0
15 to 19 0 0 0 0 1 1 1 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 1 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 4 0 0 6 7 6 5 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 4 TA = 6
0 AG + 0 GA + 0 CT + 0 TC = 0
5 GT + 6 TG + 7 CA + 6 AC = 24
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7297758|gb|AE003630.1|AE003630 Drosophila melanogaster genomic scaffold 142000013386055 section 23 of 63, complete sequence
Position Repeat Coverage Repeat
43302 GT * 12 23/24 GT GT GT GT GT GT GT GT GT GT GT GC
48801 AT * 12 22/24 AT AT AC AT AT AC AT AT AT AT AT AT
57041 CA * 10 18/20 CA CA CA CA CA CA CA CA GA GA
60081 CA * 13 24/26 CA CC CA CA CA CA CA CA CA CA AA CA CA
72968 TC * 10 18/20 TC TC TC TC TC GC TC CC TC TC
74282 TG * 11 20/22 TG TG TG TA TG GG TG TG TG TG TG
114997 TA * 17 31/34 TA TA TA TA TG TA TA TA TA TA TA TA TG TA TA TT TA
130873 AC * 10 18/20 AC AC AC AC AC AC AC AT TC AC
138203 AT * 14 26/28 AT AT CT AT AC AT AT AT AT AT AT AT AT AT
140351 TA * 11 20/22 TA AA TA TA TA TA TA TA TA TT TA
144672 CA * 11 20/22 CA CT CG CA CA CA CA CA CA CA CA
147844 CA * 12 22/24 CA CA CA CT CA CA CA CA CA CA CG CA
154691 GA * 11 20/22 GA GA GA GA GA GA GA CA GA TA GA
163468 TG * 10 19/20 TG TG TG TG TG TG TG TG TG GG
164797 AC * 11 20/22 AC AC AC TG AC AC AC AC AC AC AC
165535 AC * 12 22/24 AC TC AC AC AC AC AC AC AC AC AC AT
165859 AT * 11 20/22 AT AT AT AT AC AT AT GT AT AT AT
173740 TA * 10 19/20 TA TA TA TA TA TA TA TA CA TA
176535 CA * 16 30/32 CA CA CA CA CA CA CA CA CG CA CA CA CA CA CA CC
182833 AC * 10 18/20 AC AT AC AC AC AC AC AC AC AA
237808 TG * 11 20/22 TG TG TG TT CG TG TG TG TG TG TG
238900 TG * 10 18/20 TG AG TG TG TG TG TG TC TG TG
262976 AT * 13 24/26 AT AT AT GT AT AT AT AT AT AT AT GT AT
269182 TC * 11 20/22 TC TC TT TC TC GC TC TC TC TC TC
270530 CA * 11 20/22 CA CA CA CA CA CA CA TA CA CA AA
272023 CA * 12 22/24 CA CA CA CA CA CA GA CA CA CA CA CG
273316 AG * 13 24/26 AG GA AG AG AG AG AG AG AG AG AG AG AG
-----------------------------------------------------------------------------------------
Total sequence length......................... 276576
Total number of repeats detected.............. 27
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 2 1 1 4 6 4 1 2 0 0 0
15 to 19 0 1 0 0 0 1 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 3 1 1 4 7 4 1 2 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 3 TA = 7
1 AG + 1 GA + 0 CT + 2 TC = 4
1 GT + 4 TG + 7 CA + 4 AC = 16
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7297715|gb|AE003629.1|AE003629 Drosophila melanogaster genomic scaffold 142000013386055 section 22 of 63, complete sequence
Position Repeat Coverage Repeat
17705 TG * 16 29/32 TG TG TG TG TG TG TG TG TG TG TG TG TG TG GG GT
27175 CA * 15 27/30 CA CA CA CA CA CA CA CA CA CA CA CA CA CC GT
29598 TA * 10 18/20 TA TA TA TA TA TA TA TA TC CA
30265 TG * 13 25/26 TG TG TG TA TG TG TG TG TG TG TG TG TG
32771 AC * 13 24/26 AC AC AC TC AC AC AC AC AC AC AC AC TC
35109 GT * 10 19/20 GT GT GT GT GT GT GT GT TT GT
46996 AT * 12 22/24 AT AT AT AT AT TT AT AT AT AT AT GT
56398 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CT CG CA
78098 TG * 11 20/22 TG TG TG TG TG TG TG CG TG TG TC
102989 AT * 13 24/26 AT GC AT AT AT AT AT AT AT AT AT AT AT
104508 GT * 10 18/20 GT GT AA GT GT GT GT GT GT GT
128827 TG * 10 19/20 TG TG TG TG TG TG TG TG AG TG
130655 TA * 10 18/20 TA TA TA TA TA TA TA TA TT TC
184507 AC * 10 18/20 AC AC AC AC AC AC AC AC AA GC
194926 TA * 10 18/20 TA TA CA TA TA TA TA TG TA TA
239117 AT * 14 26/28 AT AT AT GT AT AT AT AT AT AT AT AT AT AC
241830 TA * 11 20/22 TA TA TC TA TA TA TA TA TA TA TT
248833 CA * 10 18/20 CA CA CA GG CA CA CA CA CA CA
249819 AG * 10 18/20 AG AA AG AG AA AG AG AG AG AG
-----------------------------------------------------------------------------------------
Total sequence length......................... 260791
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 4 1 0 2 2 3 2 0 0 0 0
15 to 19 0 0 0 0 0 1 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 4 1 0 2 3 4 2 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 4 TA = 7
1 AG + 0 GA + 0 CT + 0 TC = 1
2 GT + 4 TG + 3 CA + 2 AC = 11
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7297628|gb|AE003628.1|AE003628 Drosophila melanogaster genomic scaffold 142000013386055 section 21 of 63, complete sequence
Position Repeat Coverage Repeat
9779 AT * 12 22/24 AT AA AT AT AT AT AT AT AT TT AT AT
23279 AC * 12 22/24 AC AT AC AC AC AC AC AC AC AC AC AG
40231 AC * 11 20/22 AC AC AG AC AC AC GC AC AC AC AC
83225 TA * 10 19/20 TA TA TA TA TA TA TA TA TA TT
131573 TA * 11 20/22 TA AA TA TA TA TA TA TG TA TA TA
139674 AC * 16 29/32 AC AC AC AC AC AC AC AC AC AC AC CC GC AC GC AC
151925 GT * 11 20/22 GT GT GC TT GT GT GT GT GT GT GT
161063 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AT TA
176383 TA * 10 18/20 TA TA TA TA TA TA TG TG TA TA
209161 TA * 13 25/26 TA TA TA TA TA TA TA TA TA TA TA TA TG
219936 TA * 12 23/24 TA TA TA TA TA TA TA TA TA TA TA CA
220836 TA * 10 18/20 TA TA TA CA TA TA TA TA TA TC
226701 AT * 11 20/22 AT AT AT AT AT TT AT AT AT AT TT
231829 TA * 12 22/24 TA TA TA TA CA TA TA TA TA TA TA TG
235699 CA * 12 23/24 CA CA CA CA CA CA CA CA CA CA CA AA
239315 GT * 12 22/24 GT GT GT GT GT GT GT GT GT TG GT GT
239641 AT * 10 18/20 AT TT AT AT GT AT AT AT AT AT
262895 TG * 14 26/28 TG TG TG TG TG TG TG TG TG TG GG TG GG TG
269346 TA * 12 22/24 TA TA CA TA TG TA TA TA TA TA TA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 270055
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 8 0 0 2 1 1 2 0 0 0 0
15 to 19 0 0 0 0 1 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 8 0 0 3 1 1 2 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 8 TA = 12
0 AG + 0 GA + 0 CT + 0 TC = 0
2 GT + 1 TG + 1 CA + 3 AC = 7
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7297589|gb|AE003627.1|AE003627 Drosophila melanogaster genomic scaffold 142000013386055 section 20 of 63, complete sequence
Position Repeat Coverage Repeat
45449 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG TG CT
46624 GT * 11 20/22 GT AT GT GT GT GT GT GT GT GA GT
59600 TA * 11 20/22 TA TA TA TA TG TA TA TA TA TA TT
63259 AC * 11 20/22 AC AC AC TC AC AC TC AC AC AC AC
64188 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AC TT
76707 AT * 13 24/26 AT AT GT AT AT AT TT AT AT AT AT AT AT
77454 AT * 11 20/22 AT AT AA AT AT AT AT AT TT AT AT
89270 TA * 12 22/24 TA TG TA TA TG TA TA TA TA TA TA TA
100888 GA * 10 18/20 GA GA GA GG GA GA GA GA GA GG
113653 AT * 10 18/20 AT AT AT AT AT AT AT AT AA AA
118241 TG * 10 19/20 TG TG TG TG TG TG TG TG TG TA
125284 AC * 11 20/22 AC AC AC AC AC AC AC AC AC GT AC
125717 TA * 11 20/22 TA TA TA TT GA TA TA TA TA TA TA
126708 CA * 16 29/32 CA CA CA CA CA CA CA CA CA CA TA CA CA CA TA GA
127141 AC * 13 25/26 AC AA AC AC AC AC AC AC AC AC AC AC AC
131898 AC * 12 22/24 AC AC AC AC AC AC AC AT AC AC AC CC
132392 AT * 11 20/22 AT AT AT AT AT AT AT AT AA AT GT
133151 AC * 17 31/34 AC AC AC AC AT AC AC AC AC AC AC AC AC AC AC AC TT
141702 CA * 14 26/28 CA CA CA CA CA CA CA CA CA CA CA CA CA TG
145371 AT * 12 22/24 AT AT GT AT AT AT AT AT AT AT AT AC
158059 AT * 10 18/20 AT AT AT AT GT AT GT AT AT AT
167299 GT * 15 27/30 GT GT GT GT GT GT GT GT GT GT TT GT GT GG TT
174477 TA * 14 26/28 TA AA TA TA TA TA TA TA TA TA TA TA TA AA
180482 AG * 10 18/20 AG AG AG AG AG AG AG AG AG CT
187423 AG * 10 18/20 AG AG AG AG AG AG AG AG AG CT
190311 CA * 10 19/20 CA CA CA CA CA CA CA CA CA CC
203120 CA * 11 21/22 CA CA CA CA CA CG CA CA CA CA CA
222689 AT * 11 20/22 AT AT AT GT AC AT AT AT AT AT AT
244479 GT * 10 18/20 GT TT GT GT GT AT GT GT GT GT
254894 CA * 11 20/22 CA CA CA CA CG CA CA CA CA CA CG
-----------------------------------------------------------------------------------------
Total sequence length......................... 260794
Total number of repeats detected.............. 30
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 7 4 2 1 5 4 2 2 0 0 0 0
15 to 19 0 0 0 0 1 1 0 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 7 4 2 1 6 5 2 3 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
7 AT + 4 TA = 11
2 AG + 1 GA + 0 CT + 0 TC = 3
3 GT + 2 TG + 5 CA + 6 AC = 16
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7297545|gb|AE003626.1|AE003626 Drosophila melanogaster genomic scaffold 142000013386055 section 19 of 63, complete sequence
Position Repeat Coverage Repeat
3245 TA * 12 22/24 TA TA TA TA TA TA TA TG TA TG TA TA
5267 AT * 12 22/24 AT AT AT AT AT AT CT TT AT AT AT AT
5602 TG * 16 29/32 TG TG TG TG GG TG TG TG TG TG TG TG TG TG AG GG
6985 AT * 12 22/24 AT AT AT AT AT AT AT TT AT AT AT AA
9742 TA * 22 41/44 TA TA TA TA TT TA TA TA TA TA TA TA TA TA TA TA TT TA TA TT TA TA
11159 AG * 10 18/20 AG AG AG AG AG AG AT AG AT AG
16182 AT * 13 24/26 AT AT GT AT AT AT AT AT AT TT AT AT AT
22710 TG * 10 18/20 TG TG TC TG TG GG TG TG TG TG
28682 AC * 11 20/22 AC AC AC AC AC AA AC AC AC AC TC
31496 CA * 16 29/32 CA CA CA CA CA CA CA CA CA CG CA CA CA CA CA AC
31707 TA * 12 22/24 TA CA TA TA TA TA AA TA TA TA TA TA
32656 TA * 15 27/30 TA TA TA TA TA TC TA TA TA TA TA TA TT TA TT
37032 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA CA GC
37070 AC * 10 18/20 AC AC GC AC AC AC AC AC AC AA
38091 AC * 11 21/22 AC AC AC AC AC AC AC AC AC AC GC
43898 CA * 13 25/26 CA CA CA CA CA CT CA CA CA CA CA CA CA
44694 CA * 12 22/24 CA CA AA CA CA CA CA CA CA CA TA CA
48483 CA * 10 18/20 CA CA CA CA CA CA CT CG CA CA
86769 AT * 13 24/26 AT AT AT CC AT AT AT AT AT AT AT AT AT
87615 TG * 10 18/20 TG TG TC TG TG TG TT TG TG TG
88432 GT * 13 24/26 GT GA GT GT GT GT GT GT GT GT GT GT AT
92816 GA * 12 22/24 GA TA AA GA GA GA GA GA GA GA GA GA
93318 TA * 10 18/20 TA CA TA TA TA TG TA TA TA TA
95415 AT * 11 20/22 AT AT AT AT TT TT AT AT AT AT AT
99362 GA * 16 29/32 GA AA GA GA GA GA GA GA GA GA TA GA GA GA GC GA
101214 AT * 10 18/20 AT AT AT AT AT AT AT AT AT TC
104009 AC * 10 18/20 AC GC AC AC AC AC AC AC AT AC
104050 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA GA CT
104871 AT * 10 19/20 AT AT AT AT AT AT AT AA AT AT
105080 TG * 13 24/26 TG TG TG TG TT TG TG TG TG GG TG TG TG
109532 TG * 16 29/32 TG TG TG TG TG TG TG TG TG TG TG TA TT TG TG GG
112514 GT * 16 30/32 GT GT GT GT GT GT GT GT GT GT GT GT GT GT TT TT
114256 TA * 17 31/34 TA TA TA TA TA TA TA TA TA TA TG TA TA TA CG TA TA
114603 CA * 11 20/22 CA CA CA CA TA CA TA CA CA CA CA
116064 AC * 13 24/26 AC AC GC AC GC AC AC AC AC AC AC AC AC
118798 GT * 11 20/22 GT GT GT GG GT GT GT GT GT GC GT
121260 CA * 10 19/20 CA AA CA CA CA CA CA CA CA CA
123914 TG * 12 22/24 TG TG TG TG CT TG TG TG TG TG TG TG
125804 GT * 12 23/24 GT GT GT GT GT GT GT GT GT GT GT GA
126536 TG * 10 18/20 TG TA TG TG TG TG TG TG TG TC
132447 GT * 12 22/24 GT GT GT GT GT CA GT GT GT GT GT GT
137694 GT * 12 22/24 GT GA GT GT GT GT GT GT GT GT GT GA
141537 AT * 12 22/24 AT AT AT AT AT AT AT AT AT AT GT AC
143547 AC * 10 19/20 AC AC AC AC AC AC AC AC AC AT
146075 TG * 11 20/22 TG TG TG CG TG TG TG TG AG TG TG
148036 TG * 12 22/24 TG TG TG TG TA TA TG TG TG TG TG TG
149765 AC * 13 24/26 AC AC AG AC AC AC AC AC AC AC AC AG AC
150039 AC * 14 26/28 AC CC AC AC AC AC AC AC AC AT AC AC AC AC
153520 AT * 18 34/36 AT TG AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
154790 TC * 12 22/24 TC CG TC TC TC TC TC TC TC TC TC TC
164421 CA * 11 20/22 CA CA CA CA CA CA CA CA CA TA TA
165832 CT * 16 29/32 CT GT CT CT CT CT CT CT CT CT CT CT GT CT AT CT
169169 AG * 11 20/22 AG AA AG AG AG AG AG AG AG AG AT
171934 CA * 13 24/26 CA CA CA CA CA CA AA CA CA CA CA CA TA
173187 AT * 10 18/20 AT AT AT AT AT AT GT AT AT AA
175601 GT * 11 20/22 GT GT GT GT AT GT GT GT GT GT GG
218273 TC * 12 22/24 TC TC TC TC TC TC TC TC TT TC TC TA
218304 CT * 16 30/32 CT CT GT CT CT CT CC CT CT CT CT CT CT CT CT CT
240506 AT * 10 18/20 AT AT AT AT AT AT AA AT AT CT
259547 AT * 10 18/20 AT CT GT AT AT AT AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 265236
Total number of repeats detected.............. 60
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 11 3 2 1 8 9 7 6 2 0 0 0
15 to 19 1 2 0 1 0 1 2 1 0 2 0 0
20 to 24 0 1 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 12 6 2 2 8 10 9 7 2 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
12 AT + 6 TA = 18
2 AG + 2 GA + 2 CT + 2 TC = 8
7 GT + 9 TG + 10 CA + 8 AC = 34
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7297520|gb|AE003625.1|AE003625 Drosophila melanogaster genomic scaffold 142000013386055 section 18 of 63, complete sequence
Position Repeat Coverage Repeat
12079 TC * 10 19/20 TC TC TC TC TC TC TC TT TC TC
15457 TA * 10 18/20 TA CT TA TA TA TA TA TA TA TA
25810 TG * 17 31/34 TG TG TG CA TG TG TG TG TG TG TG TG TG TG TG TG TC
27223 TA * 13 24/26 TA TA TA TA TA TA TA TG TA TA TA TA AA
34018 TA * 13 24/26 TA TA TA TA TA TA TA TG TA TA TA TA AA
34299 CA * 11 21/22 CA CA CA CA CA GA CA CA CA CA CA
34385 AC * 11 20/22 AC AC AC TC AC AC AC AC AC AC TC
35387 AG * 11 21/22 AG AG AG AG AG AG AG AG AG AG AT
40420 GT * 10 18/20 GT GT GT GT GC GT GT GT GT TT
43495 TA * 10 18/20 TA TA TA TA TA TA TA TA TT TT
47398 TG * 10 18/20 TG TG TG AG TG TG TG TG CG TG
62165 AC * 13 24/26 AC AC AC AC AC AC AC AA CC AC AC AC AC
73415 CT * 11 20/22 CT CT CT CT CT CT CT CT TT CT CC
74765 GA * 13 24/26 GA GA GA GA GA GA GA GA GG GA GA GA AA
85099 GT * 10 18/20 GT GT GC GT GT GT TT GT GT GT
102596 AT * 13 24/26 AT GA AT AT AT AT AT AT AT AT AT AT AT
107855 TG * 13 24/26 TG TG TG TG TA TG TC TG TG TG TG TG TG
110993 AC * 11 20/22 AC AC AC AC AC AC AC GC AC AC AG
111656 GT * 12 22/24 GT GT GT AT GT GT GT GT GT GT GT TT
118044 GA * 10 18/20 GA GC GG GA GA GA GA GA GA GA
141317 TA * 10 18/20 TA AA TA TT TA TA TA TA TA TA
148527 TA * 11 20/22 TA TA TA TA TT TA TA AA TA TA TA
164839 AC * 10 18/20 AC AC AC AG AC AC AG AC AC AC
170100 AT * 11 20/22 AT GT AC AT AT AT AT AT AT AT AT
212106 AC * 12 23/24 AC AC AC GC AC AC AC AC AC AC AC AC
231705 AT * 13 24/26 AT AT AT AT AT AT AT AC AT AT AT AT CT
234227 TA * 15 27/30 TA AA TA TA TA TA TT TA TA TA TA TA TA TA TT
240124 AT * 11 20/22 AT CG AT AT AT AT AT AT AT AT AT
250450 GT * 10 18/20 GT GT GC GT GT GT GT AT GT GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 260624
Total number of repeats detected.............. 29
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 6 1 2 5 1 2 4 1 1 0 0
15 to 19 0 1 0 0 0 0 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 7 1 2 5 1 3 4 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 7 TA = 11
1 AG + 2 GA + 1 CT + 1 TC = 5
4 GT + 3 TG + 1 CA + 5 AC = 13
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7297497|gb|AE003624.1|AE003624 Drosophila melanogaster genomic scaffold 142000013386055 section 17 of 63, complete sequence
Position Repeat Coverage Repeat
13309 CA * 12 22/24 CA CA CA CC CA CA CA CA CA TA CA CA
17578 GT * 10 18/20 GT GT GT GT GT GT GT GT GC CT
24740 AC * 10 19/20 AC AC AC AC AC AC AC AC AC AT
26741 CA * 15 27/30 CA CA CA CA CA CA CA CA CA CA CA CA CA AC GA
37732 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AC TC TC
44172 AC * 13 24/26 AC AT AC AC AC AC CC AC AC AC AC AC AC
44678 TA * 10 18/20 TA TA TA TA TG TC TA TA TA TA
47821 AT * 12 22/24 AT AA AT AT AT AT AT AT AT AT TT AT
50053 AT * 13 24/26 AT CG AT AT AT AT AT AT AT AT AT AT AT
61866 TG * 10 18/20 TG TT TA TG TG TG TG TG TG TG
65427 CA * 10 19/20 CA CA CA CA CA CA CA CA CA GA
66009 GT * 11 20/22 GT GT GT GT GT GA GT GT GT AT GT
75476 CA * 16 29/32 CA CA CA CA CA CA CA CA CA CA CA CA CT CA CC AA
86410 AC * 11 20/22 AC TC GC AC AC AC AC AC AC AC AC
86457 TG * 10 18/20 TG TG TG TG TG TG TG AG GG TG
88913 GT * 13 24/26 GT GT GT AT GT GT GT GT GT GT GT GT TT
94084 AT * 12 22/24 AT AA AT AT AT AT AA AT AT AT AT AT
94639 TA * 10 18/20 TA AA TA TA TA AA TA TA TA TA
113318 GT * 12 22/24 GT GT GT GG GT GT GT GT GT GT GT GG
113433 AG * 12 22/24 AG AA AG AG AG AG AG AG AG AG AG AA
113980 CA * 10 18/20 CA CA CA CA CA CA CA TA CA TA
115202 TG * 10 19/20 TG TG TG TG TG TG TG TA TG TG
123349 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA TG CA
127229 AC * 11 21/22 AC GC AC AC AC AC AC AC AC AC AC
135175 AT * 26 47/52 AT AT AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA AT TT TT AG
157926 GT * 10 18/20 GT GT GC GT GT GT GT GT CT GT
169842 TG * 13 24/26 TG TA TG AG TG TG TG TG TG TG TG TG TG
182378 GT * 13 24/26 GT GT GT GT GT GT GT GT GT AA GT GT GT
201875 GT * 15 27/30 GT GT GT GC GT GT GT AT GT GT GT GT GT GT GA
203919 CA * 10 18/20 CA CA CA CA CA CA CA CA CA TT
204114 TA * 10 18/20 TA TA TA TA AA TA TA TA TA TT
219607 TG * 12 22/24 TG TG TG TG TG TG CG TG TG TA TG TG
221531 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CT CA CT
237393 CT * 10 18/20 CT CT CT CT CT CT AT CT AT CT
237567 GT * 12 22/24 GT GT GT GT TT GC GT GT GT GT GT GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 248414
Total number of repeats detected.............. 35
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 3 1 0 5 6 5 7 0 1 0 0
15 to 19 0 0 0 0 0 2 0 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 1 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 3 1 0 5 8 5 8 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 3 TA = 7
1 AG + 0 GA + 1 CT + 0 TC = 2
8 GT + 5 TG + 8 CA + 5 AC = 26
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7297460|gb|AE003623.1|AE003623 Drosophila melanogaster genomic scaffold 142000013386055 section 16 of 63, complete sequence
Position Repeat Coverage Repeat
2647 TA * 12 22/24 TA AA TA TA TG TA TA TA TA TA TA TA
19435 CT * 11 20/22 CT CA CT CT CT CT CT CT CT CG CT
34927 AT * 11 21/22 AT AT AT AT AT AT AT AT AT AT TT
57201 TA * 10 18/20 TA TA TA TA TA TA CA TA TA TG
79240 AT * 12 22/24 AT AT AT AT AT GT AT TT AT AT AT AT
90403 CA * 12 22/24 CA AA CA CA CA CG CA CA CA CA CA CA
100707 CA * 12 22/24 CA CA CA TA CA CA CA CA CA CA CA TA
106562 AT * 11 20/22 AT AG AA AT AT AT AT AT AT AT AT
120064 AT * 15 27/30 AT AT GT AT AT AT AT AT AT AT AT GT AT AT AC
124273 AG * 11 20/22 AG AG AA AG AG AG AG AG AG AG CG
142986 AT * 10 18/20 AT AT AT AT AT AT TT AT AT AA
147562 AT * 11 21/22 AT AT AT AT AT AT AT AT AT AT AC
177276 TA * 12 22/24 TA TA TA TA TG TA TA CA TA TA TA TA
198226 CA * 12 22/24 CA AA CA CA CA CA CA CA CA CA CA TA
201054 TG * 13 25/26 TG TG TG TG TG TG TG TG TG TG TG AG TG
221831 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT GG GA
250298 TG * 10 18/20 TG TG TG TG TG TG TG TG TT TA
252079 AT * 12 22/24 AT AT AT AT AT AT GT AT AT AT AT AA
257796 TG * 10 18/20 TG TA AG TG TG TG TG TG TG TG
262787 GA * 15 27/30 GA GA GA GA GA GA GA GA TA GA GA GA GA GC GC
-----------------------------------------------------------------------------------------
Total sequence length......................... 267547
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 6 3 1 0 0 3 3 1 0 1 0 0
15 to 19 1 0 0 1 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 7 3 1 1 0 3 3 1 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
7 AT + 3 TA = 10
1 AG + 1 GA + 1 CT + 0 TC = 3
1 GT + 3 TG + 3 CA + 0 AC = 7
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7297438|gb|AE003622.1|AE003622 Drosophila melanogaster genomic scaffold 142000013386055 section 15 of 63, complete sequence
Position Repeat Coverage Repeat
29761 AT * 10 19/20 AT AT AT AT AT AT AT AT AT TT
39415 TC * 13 24/26 TC TC TC CC TC TC TC TC TC TC TC TC TA
44271 TA * 16 30/32 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TC GA
63823 AT * 15 28/30 AT AA AT AT AT AA AT AT AT AT AT AT AT AT AT
65469 TG * 11 20/22 TG TG TT CG TG TG TG TG TG TG TG
76793 TG * 10 18/20 TG TG TG TG TG TG TG TG CG TA
79948 CA * 12 22/24 CA CA CA TA CA CA CA CA CA CA CA TA
95017 TA * 27 49/54 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA TA TA CA TT TA TA TG GA
124447 TG * 12 22/24 TG TG TG TG TG GG TG TG TG TG TC TG
133517 TA * 10 18/20 TA TA TA AA TA TA CA TA TA TA
134477 GT * 12 22/24 GT GT GT GT GT GT GT GT GC GT GT GG
135709 TA * 15 28/30 TA TA TA TA TA TA TA TA TA TA TG TA TA TA TT
151675 TC * 11 20/22 TC GC TC TC TC TC TC TC TC TC TG
155004 TA * 13 24/26 TA TA CA TA CA TA TA TA TA TA TA TA TA
164446 TA * 10 18/20 TA TA TA TA CA TA TA TA TG TA
173318 AT * 12 22/24 AT AT AT AT AT AT AA AA AT AT AT AT
180023 GT * 14 26/28 GT GT GT GT GT GT GT GT GT GA GT GT GT GC
180257 AT * 10 18/20 AT AT AT AT AT AG AT AC AT AT
252960 TC * 11 20/22 TC CC CC TC TC TC TC TC TC TC TC
-----------------------------------------------------------------------------------------
Total sequence length......................... 262244
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 3 0 0 0 1 3 2 3 0 0 0
15 to 19 1 2 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 1 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 6 0 0 0 1 3 2 3 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 6 TA = 10
0 AG + 0 GA + 0 CT + 3 TC = 3
2 GT + 3 TG + 1 CA + 0 AC = 6
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7297389|gb|AE003621.1|AE003621 Drosophila melanogaster genomic scaffold 142000013386055 section 14 of 63, complete sequence
Position Repeat Coverage Repeat
8759 GT * 10 18/20 GT GT GT GT GT GC GT GT GT GC
50331 AC * 10 18/20 AC AC AC AC AT AC AC AT AC AC
58206 TG * 10 18/20 TG CG TG TG TG TG TG TG CG TG
58723 TC * 11 20/22 TC TC GC TC TC TC TC TC TC TC TT
61614 TG * 11 20/22 TG CG TG CG TG TG TG TG TG TG TG
62561 GA * 13 24/26 GA TA GA GA GA GA GA GA GA GA GC GA GA
67223 CT * 11 20/22 CT CT CT TT CT CT CT CT CT CT CC
68268 GT * 10 18/20 GT GT GT GT GT TT GT GT GT TT
72272 AC * 10 18/20 AC AC AC AT AC AC AC AC AC TC
173306 TA * 12 22/24 TA TA TA CA TA TA TA TA TG TA TA TA
201955 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC AC AC TT
204843 GT * 12 22/24 GT GC GT GT GT GT GT GT GT GT GT GG
220885 AT * 12 22/24 AT AT AT AC AG AT AT AT AT AT AT AT
228760 TG * 22 40/44 TG TG TG TG TG TG TG TG TG TG TG TG TG TA TG GG TG AG TG TG TG TT
229466 GA * 11 20/22 GA GA GA GA GA GA GA GC GA GA GG
230031 CA * 17 31/34 CA CA CA CC CA CA CA CA CA CA CA CA CA CA CA CT CC
231645 AT * 13 24/26 AT AA AT AT AT AT AT AT AT AT AT AT TT
234212 AC * 12 22/24 AC AC AC AC AC AC AC AG GC AC AC AC
244569 TG * 11 20/22 TG TG CG TG TG TG TG GG TG TG TG
247713 AT * 11 20/22 AT AT AT AT AT GT AC AT AT AT AT
248406 AC * 12 22/24 AC CC CC AC AC AC AC AC AC AC AC AC
251923 CA * 10 18/20 CA CA CA CT CA CA CA CA CA TA
253401 TG * 12 22/24 TG CG TG TG TG TG TG TG TG TG TG TC
253918 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG CA
254164 AT * 10 18/20 AT AT AT CT AA AT AT AT AT AT
256653 AT * 13 24/26 AT AT AT AT AT AT AT AT AC AT AT AT TT
261952 GT * 11 20/22 GT GT AT GT GT GT TT GT GT GT GT
270179 GT * 11 21/22 GT GT GT GT AT GT GT GT GT GT GT
279792 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC AC AG AG
280866 AT * 12 22/24 AT AT AT AT AT AT AT AT AT TC AT AT
287927 CA * 10 18/20 CA CA CA CA CA CA CA CT CA CG
306041 GT * 13 24/26 GT AT GT GC GT GT GT GT GT GT GT GT GT
307129 TG * 11 20/22 TG TG TG TG TG TG TG TG CG AG TG
309291 AT * 11 20/22 AT AT AT AT AT AG AT AT AT AC AT
310660 AT * 10 18/20 AT AC AT AT AT AT AT AT AA AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 311009
Total number of repeats detected.............. 35
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 8 1 0 2 6 2 6 6 1 1 0 0
15 to 19 0 0 0 0 0 1 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 1 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 8 1 0 2 6 3 7 6 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
8 AT + 1 TA = 9
0 AG + 2 GA + 1 CT + 1 TC = 4
6 GT + 7 TG + 3 CA + 6 AC = 22
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7297341|gb|AE003620.1|AE003620 Drosophila melanogaster genomic scaffold 142000013386055 section 13 of 63, complete sequence
Position Repeat Coverage Repeat
350 GT * 13 24/26 GT GC GT GT GT GT AT GT GT GT GT GT GT
3448 AC * 12 22/24 AC AC AC TC AC AC AC AC AC AC CC AC
12580 TA * 12 22/24 TA AA TA TA TA TA TA TA TA TA TA CA
17213 AT * 12 22/24 AT AT AA AT AT AT AT AT AT AT AT GT
70896 GT * 11 20/22 GT GT GT GT GT GT GT GT GT GC CT
84897 TA * 10 18/20 TA TA TC TA TA TA CA TA TA TA
137175 TA * 11 20/22 TA TA TA TA TA TA TA CA TA TA TT
138793 TA * 11 20/22 TA TA TA TA TA TG TA CA TA TA TA
139158 CA * 11 20/22 CA CA CA CA CA CA CA CA CG CA CT
162712 AT * 10 18/20 AT AT AT AT AT TT AT TT AT AT
170327 CA * 11 20/22 CA CG CA CA CA CA CA CA CA CA AA
184751 CA * 10 18/20 CA CA CA CA CA TG CA CA CA CA
188255 TA * 10 18/20 TA CA TG TA TA TA TA TA TA TA
199743 TA * 11 20/22 TA TA TA TG TA TA TA TA CA TA TA
225424 TG * 15 27/30 TG CA TG TG TG TG TG TG TG TG TG TG TG TG GG
-----------------------------------------------------------------------------------------
Total sequence length......................... 266748
Total number of repeats detected.............. 15
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 6 0 0 1 3 0 2 0 0 0 0
15 to 19 0 0 0 0 0 0 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 6 0 0 1 3 1 2 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 6 TA = 8
0 AG + 0 GA + 0 CT + 0 TC = 0
2 GT + 1 TG + 3 CA + 1 AC = 7
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7297302|gb|AE003619.1|AE003619 Drosophila melanogaster genomic scaffold 142000013386055 section 12 of 63, complete sequence
Position Repeat Coverage Repeat
17814 TG * 10 19/20 TG TG TG CG TG TG TG TG TG TG
17967 AC * 11 20/22 AC AC CA AC AC AC AC AC AC AC AC
33834 AC * 10 18/20 AC AC AC AC AC AC AA GC AC AC
40621 TA * 13 24/26 TA TT TA TA TA TA AA TA TA TA TA TA TA
84307 AC * 10 18/20 AC TC AC AC AC AG AC AC AC AC
84814 TA * 13 24/26 TA TG TA TA TA TA TA TA TA TA TA TA TG
89967 TA * 14 26/28 TA TA TA TA TA TA CT TA TA TA TA TA TA TA
98881 TG * 10 18/20 TG TG TA TG TG TG TG TA TG TG
105356 CT * 11 21/22 CT CT CT CT CT CT CT CA CT CT CT
108044 TG * 12 22/24 TG GC TG TG TG TG TG TG TG TG TG TG
111582 CA * 22 40/44 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA TA CA AT CA AA
119435 CA * 16 30/32 CA AA CA CA CA CA CA CT CA CA CA CA CA CA CA CA
119869 TG * 10 19/20 TG TG TG TG TG TG TG TG TG CG
119918 AC * 15 28/30 AC TC AC AC AC AC AC AC AC AC AC AA AC AC AC
120290 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG AG TG GG
123395 AT * 16 29/32 AT AT AT AT CT AT AT AT AT AT AT AT AT AC AT AC
127308 TA * 10 18/20 TA TA TA TA TA TA TT TA TT TA
140355 TA * 13 24/26 TA TA TA TA TA TA TA TG TA TG TA TA TA
140453 AG * 10 18/20 AG TG AG AC AG AG AG AG AG AG
145973 GA * 15 27/30 GA GA GA GA GA GA GA GA GA GA GA GA CG GA GG
152949 CA * 10 18/20 CA CA CA CA CG CA CA CA CA CC
153762 TA * 10 18/20 TA TA TT TA TA TA TG TA TA TA
155945 AC * 10 18/20 AC GC AC AC AC AC AC AC AC GC
178139 GT * 16 30/32 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GC GC
186242 TA * 16 29/32 TA TA TA TA TA TA TA TA TA TA TA TA TA TT TT TT
213556 GT * 13 24/26 GT GA GT GT GC GT GT GT GT GT GT GT GT
213779 AG * 10 18/20 AG AG AG AG AG AT AG AG AG TG
221940 AT * 12 23/24 AT AT AC AT AT AT AT AT AT AT AT AT
253719 AT * 15 27/30 AT AT AT AT AT AT AT AT AT AT AT AA CT AT AA
265669 TC * 10 18/20 TC TC TC TC TC TC TC TC AC AC
275136 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AG AG
276439 TA * 10 18/20 TA TA TA TA GT TA TA TA TA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 282125
Total number of repeats detected.............. 32
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 7 2 0 5 1 5 1 1 1 0 0
15 to 19 2 1 0 1 1 1 0 1 0 0 0 0
20 to 24 0 0 0 0 0 1 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 8 2 1 6 3 5 2 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 8 TA = 11
2 AG + 1 GA + 1 CT + 1 TC = 5
2 GT + 5 TG + 3 CA + 6 AC = 16
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7297264|gb|AE003618.1|AE003618 Drosophila melanogaster genomic scaffold 142000013386055 section 11 of 63, complete sequence
Position Repeat Coverage Repeat
29333 AT * 10 18/20 AT AT AT TT AT AT TT AT AT AT
59536 TA * 11 20/22 TA TA TA TA TA AA TA TA TA TG TA
72730 AC * 10 18/20 AC AC AC AC AC AC GC AC AC TC
102935 CA * 12 22/24 CA CA CA CA CA CA CC CG CA CA CA CA
149128 CT * 10 18/20 CT CT CT CT CT CT CT CT CC CA
149275 TC * 10 18/20 TC TC TC TC TC TC GC TC TC AC
193151 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT TT GG
213992 CA * 11 20/22 CA CA CA CA CA TA CA TA CA CA CA
221905 CA * 11 20/22 CA CA CA CA CA CA GA CA CA GA CA
234280 AT * 11 20/22 AT TT AT AT AT AT AT GT AT AT AT
251110 AG * 10 18/20 AG AG AG AG AG AG AG AG AA AT
257521 AG * 10 18/20 AG AG AG AG GG AG AG AG AG TG
259034 GT * 10 18/20 GT GC GA GT GT GT GT GT GT GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 268667
Total number of repeats detected.............. 13
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 1 2 0 1 3 0 2 1 1 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 1 2 0 1 3 0 2 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 1 TA = 3
2 AG + 0 GA + 1 CT + 1 TC = 4
2 GT + 0 TG + 3 CA + 1 AC = 6
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7297236|gb|AE003617.1|AE003617 Drosophila melanogaster genomic scaffold 142000013386055 section 10 of 63, complete sequence
Position Repeat Coverage Repeat
11608 CA * 11 20/22 CA CA CA CA CA CA CG CA CG CA CA
30829 AT * 10 19/20 AT AT AT AT AT AT AT AT AT AC
39652 TA * 11 20/22 TA TA TA TA TA CA TA TA TG TA TA
41048 TA * 10 18/20 TA TA TA CA TA TA TT TA TA TA
78833 TC * 12 22/24 TC TC TC TC TC TC TC TC CC TC TC TA
87611 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AT TA
129468 AT * 17 31/34 AT AT AT AC AA AT AT AT AT AT AT AT AT AT AT AA AT
134755 TA * 11 20/22 TA TA TA TA TA TA TA TA TA GA AA
153444 TA * 12 22/24 TA TA TA TA TA TA TA CA CA TA TA TA
168377 AT * 12 22/24 AT AA AT AT AT AT AT GT AT AT AT AT
198864 CA * 12 22/24 CA CA AA CA CA CA CA CA CA CA CA CT
200029 TA * 11 20/22 TA TA CA TA TA CA TA TA TA TA TA
217299 GA * 10 18/20 GA GA GA GA CA GA GA TA GA GA
228026 GT * 13 24/26 GT GT GT GT GT GT GC GT GT GT GT GT GA
229439 GT * 11 21/22 GT GT GT GT GT GT GT GT GT GT AT
231642 TA * 12 22/24 TA TA TA TA TA TA TA CA TA TA CA TA
239987 TA * 10 18/20 TA TA TA TG TA TA TA TA TA TC
243698 TG * 16 29/32 TG TG TG CA TG TG TG TG TG TG TG TG TG TG TT TG
255222 TA * 10 18/20 TA TA TA TA TA TA TA TA TA GC
-----------------------------------------------------------------------------------------
Total sequence length......................... 257296
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 8 0 1 0 2 0 2 1 0 0 0
15 to 19 1 0 0 0 0 0 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 8 0 1 0 2 1 2 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 8 TA = 12
0 AG + 1 GA + 0 CT + 1 TC = 2
2 GT + 1 TG + 2 CA + 0 AC = 5
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7297210|gb|AE003616.1|AE003616 Drosophila melanogaster genomic scaffold 142000013386055 section 9 of 63, complete sequence
Position Repeat Coverage Repeat
6084 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA CA TG
11579 TG * 10 18/20 TG TG TG TG TG TG TG TT CG TG
15685 TG * 11 20/22 TG TG TG TT AG TG TG TG TG TG TG
22371 TG * 10 18/20 TG TA TT TG TG TG TG TG TG TG
46612 TG * 10 18/20 TG TG TG CG TG TG TG TG TG TT
51595 TA * 10 19/20 TA TA TA TA TA TA TA TA TA GA
59737 AT * 18 33/36 AT AT AT AT AT AT AT AT AT AT AT AT AG AC AT AT AC AT
60481 TA * 11 20/22 TA TA TA TA TA TA TA TA TA TT TC
66398 AC * 10 18/20 AC AC AC AC AC AC AC AC AT AT
68767 GT * 13 24/26 GT GT GT TT GT GT GT GT GT GC GT GT GT
68871 AC * 10 19/20 AC CC AC AC AC AC AC AC AC AC
83043 TC * 12 22/24 TC TC TC TC CC TC AC TC TC TC TC TC
83068 CT * 12 22/24 CT CG CT CT CT CT CT CT CT CT CT TT
94249 TC * 10 19/20 TC TC TC TC TC TC TC TC TC TA
106316 TG * 10 18/20 TG TG TG TG TG TG TG TG TG GT
114260 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TG TG TT TG TA CG
138907 CA * 20 37/40 CA CA CA CG CA CT CA CA CA CA CA CA CA CA CT CA CA CA CA CA
172124 CA * 13 24/26 CA CA CA CC CA CA CA CA CA CA CA CA AA
191556 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CT GA
195614 TA * 10 18/20 TA TA TA TA TA TA TA TA TA GT
227937 TG * 12 22/24 TG AG TA TG TG TG TG TG TG TG TG TG
235446 TA * 12 22/24 TA TA TA TG TA TA TA TA TA AA TA TA
254275 TG * 10 19/20 TG TG TG TG TG TG TG TG TG TT
259421 TG * 12 22/24 TG TG TG TG TG TG TG TG TT TG AG TG
266690 GA * 10 19/20 GA GA GA GA GA GA GA GA GA GG
-----------------------------------------------------------------------------------------
Total sequence length......................... 267518
Total number of repeats detected.............. 25
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 4 0 1 2 3 8 1 2 1 0 0
15 to 19 1 0 0 0 0 0 1 0 0 0 0 0
20 to 24 0 0 0 0 0 1 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 4 0 1 2 4 9 1 2 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 4 TA = 5
0 AG + 1 GA + 1 CT + 2 TC = 4
1 GT + 9 TG + 4 CA + 2 AC = 16
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7297167|gb|AE003615.1|AE003615 Drosophila melanogaster genomic scaffold 142000013386055 section 8 of 63, complete sequence
Position Repeat Coverage Repeat
12519 AG * 10 19/20 AG AA AG AG AG AG AG AG AG AG
15972 AT * 33 60/66 AT GA AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AG GG AT AT AT AT AT TT
22567 AT * 13 24/26 AT AT AT AT AT AT AT AT AT CT AT AT CT
26794 AC * 18 33/36 AC AC AC AC AC CC AC AC AC AC AC AC AC AC AC AC AT TC
35560 TG * 13 24/26 TG CG TG TG TG TG TG TG TG TG TG TT TG
67412 GT * 20 36/40 GT TT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GA GT GA GC
67998 CA * 10 18/20 CA CT CA CA CA CA CA CA CA GA
68152 CA * 10 18/20 CA GA CA CA CA CA CA CA CA GA
74445 TA * 11 21/22 TA TA TA TA CA TA TA TA TA TA TA
82210 AT * 12 23/24 AT AT AT AT AT AT AT AT AT AT AT TT
82828 AT * 10 19/20 AT AT AT AT AT AT AT AT AA AT
107934 CA * 12 22/24 CA CA CA CA CA CA CA TA CA CA TA CA
126936 AT * 13 25/26 AT AT AT AT AT AT AT AT AA AT AT AT AT
132741 AC * 16 29/32 AC AC TC AC AC AC CC AC AC AC AC AC AC AC AC AG
132900 TG * 11 20/22 TG TG TG TC TG TA TG TG TG TG TG
133043 AC * 10 19/20 AC AC AC AC AC AC AC AC AC AT
133939 AT * 11 20/22 AT AT AT AT AT AT GT AC AT AT AT
136318 AT * 10 18/20 AT AT AT AT AT AC AT AT AT AC
142805 AC * 11 20/22 AC AC GC AC AC AC AC AC AC AC GC
165727 GT * 10 18/20 GT GT GT TT GT GT GT AT GT GT
170128 AT * 11 20/22 AT AT AT AT AT AT AT AT AT TT AA
172119 CA * 16 29/32 CA CA CA CA CC CA CA CA CA CA CA CA CA CA CA TG
174829 AC * 16 29/32 AC AA AC AA AC AC AC AC AC AC AC AC AC AC AT AC
216373 TA * 12 22/24 TA TC TT TA TA TA TA TA TA TA TA TA
230276 TA * 11 20/22 TA TA TA TA TA GA TA GA TA TA TA
234828 TA * 10 19/20 TA TA TA TA TA TA TA TA TA TT
246463 AG * 10 19/20 AG AT AG AG AG AG AG AG AG AG
252563 CA * 11 20/22 CA CG CA CA CA CA CA TA CA CA CA
267674 AT * 10 18/20 AT TT TT AT AT AT AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 269823
Total number of repeats detected.............. 29
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 8 4 2 0 2 4 2 1 0 0 0 0
15 to 19 0 0 0 0 3 1 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 1 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 1 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 9 4 2 0 5 5 2 2 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
9 AT + 4 TA = 13
2 AG + 0 GA + 0 CT + 0 TC = 2
2 GT + 2 TG + 5 CA + 5 AC = 14
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7297129|gb|AE003614.1|AE003614 Drosophila melanogaster genomic scaffold 142000013386055 section 7 of 63, complete sequence
Position Repeat Coverage Repeat
6566 AG * 12 22/24 AG AG AG AG AG AG AG AG AG AG AC GG
10547 TG * 12 23/24 TG TG TG TG TG TG TG TG AG TG TG TG
30673 CA * 11 20/22 CA CA CG CA CA CA CA CA CA TA CA
38689 AC * 10 18/20 AC AC AC AC AA AA AC AC AC AC
48097 CT * 16 29/32 CT CT CC CT CT CT CT CT CT CT CT CT CA CT CA CT
71929 TA * 22 40/44 TA TA TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TG CT
75461 TG * 11 20/22 TG TG TG TG TG CG TG TG TG TG AG
82194 AC * 11 20/22 AC AG AC AG AC AC AC AC AC AC AC
82377 AT * 10 18/20 AT AT AT AC AT AT AT AA AT AT
85798 AC * 18 33/36 AC TC AC AC AC AC AC AC AC AC AC AC AC AC AT CC AC AC
86154 AG * 12 22/24 AG AA AG AA AG AG AG AG AG AG AG AG
90078 GT * 10 18/20 GT GT GT GC GT GT GT GT GT AT
97090 GT * 18 33/36 GT GA CT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GG
97262 GT * 11 21/22 GT CT GT GT GT GT GT GT GT GT GT
99002 GT * 11 20/22 GT GT GT GT GT GT GT GT GT GC CT
101563 GT * 10 18/20 GT GT GT AT GT AT GT GT GT GT
104592 GT * 15 27/30 GT GT GC GT GC GT GT GT GT GT GT GT GT GT GA
114056 TG * 11 20/22 TG TG TG TG TG TG TG GG TG TG CG
114358 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AC GT
116787 AT * 10 18/20 AT AT AT AT AT AT AT AT TT AA
134624 TA * 10 18/20 TA TA TG TA TA TA TA TT TA TA
136149 TG * 10 19/20 TG TG TG TG TG TG TG TG TG TT
173812 AT * 11 20/22 AT AT AT AT AT AT AT AT AT GT TT
181103 TA * 11 20/22 TA TA TA TA TA TA TA TT TA TG TA
246381 AT * 11 20/22 AT AT GT AT AT AC AT AT AT AT AT
248301 TG * 12 23/24 TG GG TG TG TG TG TG TG TG TG TG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 259440
Total number of repeats detected.............. 26
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 2 2 0 3 1 5 4 0 0 0 0
15 to 19 0 0 0 0 1 0 0 2 0 1 0 0
20 to 24 0 1 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 3 2 0 4 1 5 6 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 3 TA = 7
2 AG + 0 GA + 1 CT + 0 TC = 3
6 GT + 5 TG + 1 CA + 4 AC = 16
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7297088|gb|AE003613.1|AE003613 Drosophila melanogaster genomic scaffold 142000013386055 section 6 of 63, complete sequence
Position Repeat Coverage Repeat
4789 CA * 12 23/24 CA CA CA CA CA CA CA CA CA CA CA CC
25394 TG * 12 22/24 TG TG TG TG TG TG TT TG TG TG TG GG
27122 TA * 10 18/20 TA TA AA TA TA TA TA TT TA TA
61979 CA * 11 21/22 CA CA CA CA CA CA CA CA CA CA TA
68322 CA * 13 24/26 CA AA CC CA CA CA CA CA CA CA CA CA CA
77427 CA * 10 19/20 CA CA CA CA GA CA CA CA CA CA
88832 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CG TA
89413 AC * 15 27/30 AC AA AT AC AC AC AC AC AC AC AC AC AC AC TC
93479 GT * 15 27/30 GT GT GT GT GT GT GT GT GT GG GT GG GT GT GA
95818 CA * 10 18/20 CA CA CA AA CA CA TA CA CA CA
99795 TG * 12 22/24 TG TG CG TG TG TG TG CG TG TG TG TG
107029 TG * 11 20/22 TG TG TG TT TG TG TG TG TG AG TG
122364 CA * 11 21/22 CA CA CA CA CA CA CA CA CA CA GA
160964 TA * 11 20/22 TA TT TA AA TA TA TA TA TA TA TA
168897 AT * 10 18/20 AT AT AT AT AT AT AT GA AT AT
170365 TA * 11 20/22 TA TA AA TA TA TA TA TA CA TA TA
172729 CA * 10 18/20 CA CA CA GA TA CA CA CA CA CA
173596 TG * 10 18/20 TG TG TC TG TA TG TG TG TG TG
220382 AC * 11 20/22 AC AC AC GC AC AC AC AC GC AC AC
238652 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CA AG
238732 TG * 11 20/22 TG TG TG TG TG TG TG TG AT TG TG
244702 GT * 11 20/22 GT GT GT GT CT GT GT GC GT GT GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 261872
Total number of repeats detected.............. 22
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 3 0 0 1 9 5 1 0 0 0 0
15 to 19 0 0 0 0 1 0 0 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 3 0 0 2 9 5 2 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 3 TA = 4
0 AG + 0 GA + 0 CT + 0 TC = 0
2 GT + 5 TG + 9 CA + 2 AC = 18
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7297037|gb|AE003612.1|AE003612 Drosophila melanogaster genomic scaffold 142000013386055 section 5 of 63, complete sequence
Position Repeat Coverage Repeat
18185 AT * 10 18/20 AT TT AT AT AT AT AT AT AT AG
23382 GA * 12 23/24 GA GA AA GA GA GA GA GA GA GA GA GA
40554 TA * 11 20/22 TA TA TA TG TA TA TA TA TA AA TA
40812 TG * 10 18/20 TG TG TG TG TG TG TA TA TG TG
41062 AG * 10 19/20 AG AG AG AG AG AG AG AG AG TG
41308 CA * 10 18/20 CA TG CA CA CA CA CA CA CA CA
41642 GT * 10 18/20 GT GC GT AT GT GT GT GT GT GT
63604 CA * 10 18/20 CA CA CA CA GA CA CA CA CA CC
97860 CT * 10 18/20 CT CT CT CT CT CA CT CT CT CG
98109 CA * 11 20/22 CA CA CA GA CA CA CA CA CA CA CG
119067 CA * 12 23/24 CA CA CA CA CA CA CA CA CA CA CA AA
120008 TG * 10 18/20 TG TG CG TG TG TG TG CG TG TG
135187 GT * 15 27/30 GT GT GC TT GT GT GT GT GT GT GT GT GT GT GG
159208 AT * 10 18/20 AT AT AT AT GT AT AT AT AT AC
160619 TG * 12 22/24 TG TG TG TG TG TG TG TG TG CG AG TG
179474 AT * 11 20/22 AT AT AT AT AT AC AA AT AT AT AT
193249 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AT AG
200295 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA GA GA
230135 CT * 22 40/44 CT TG CT CT CT CT CT CT CT CT CT CT CT CT CT GT CT CT CT CT CT CC
-----------------------------------------------------------------------------------------
Total sequence length......................... 260550
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 1 1 1 1 5 3 1 0 1 0 0
15 to 19 0 0 0 0 0 0 0 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 1 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 1 1 1 1 5 3 2 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 1 TA = 4
1 AG + 1 GA + 2 CT + 0 TC = 4
2 GT + 3 TG + 5 CA + 1 AC = 11
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7297008|gb|AE003611.1|AE003611 Drosophila melanogaster genomic scaffold 142000013386055 section 4 of 63, complete sequence
Position Repeat Coverage Repeat
5077 AC * 13 24/26 AC TC AC AC AC AC AC AC GC AC AC AC AC
9592 AC * 10 18/20 AC CC AC AC AC AC AC AC AC AT
34393 CT * 12 23/24 CT CT CT CT CT CT CT CT CG CT CT CT
35807 TG * 11 20/22 TG TG TG TG TG AG TG TG AG TG TG
81514 CA * 10 18/20 CA CA CA CA CA CA CA CT CA GA
93947 AG * 10 18/20 AG AG AG AG AG AA AG AG AG AT
150399 CA * 12 22/24 CA GA CA CA CA CA CA CA CA CA CA CG
161984 TG * 11 20/22 TG CG TT TG TG TG TG TG TG TG TG
170494 CA * 13 24/26 CA CA CA GA CG CA CA CA CA CA CA CA CA
171353 CA * 13 25/26 CA CA GA CA CA CA CA CA CA CA CA CA CA
235868 TA * 10 18/20 TA TA TA TA TA TA TA TG TA TG
236081 CA * 11 20/22 CA CA CA CG AA CA CA CA CA CA CA
237618 TG * 10 19/20 TG TG TG TG TG TG TG TG TG GG
239067 CA * 12 22/24 CA CT CA CA CA CG CA CA CA CA CA CA
247431 CT * 12 22/24 CT CT CT TC CT CT CT CT CT CT CT CT
248175 CT * 10 19/20 CT CG CT CT CT CT CT CT CT CT
-----------------------------------------------------------------------------------------
Total sequence length......................... 259961
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 1 1 0 2 6 3 0 0 3 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 1 1 0 2 6 3 0 0 3 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 1 TA = 1
1 AG + 0 GA + 3 CT + 0 TC = 4
0 GT + 3 TG + 6 CA + 2 AC = 11
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7296978|gb|AE003610.1|AE003610 Drosophila melanogaster genomic scaffold 142000013386055 section 3 of 63, complete sequence
Position Repeat Coverage Repeat
2279 AT * 11 20/22 AT AT AT AC AT AT AT AT TT AT AT
9508 CA * 18 34/36 CA CA CA CA CA CA CA CA CA CA AA CA CA CT CA CA CA CA
11444 CA * 11 20/22 CA CA CA CA CA CA CA CA TA CA TA
13534 TC * 16 29/32 TC TC TG TC TC TC TC TC TC TC TC TT TC TC TC TT
52817 CA * 10 18/20 CA CA CA CA CA CA CA CG TA CA
63257 TA * 11 20/22 TA TA TA TA TA TA TA TA TA TC CA
72103 TA * 13 24/26 TA TA TG TA TA TA TA TA TA TA TA TA GA
73198 AC * 14 26/28 AC CC AC CC AC AC AC AC AC AC AC AC AC AC
75936 CA * 10 18/20 CA CA CA AA CA CA CA GA CA CA
76010 CA * 11 20/22 CA CT CA CA CA CA CA CA CA CA AA
108435 TC * 10 18/20 TC TC TC TC TT TT TC TC TC TC
116987 CA * 10 19/20 CA CA CA CA CA CA CA CA CA CT
125509 TG * 10 19/20 TG TA TG TG TG TG TG TG TG TG
128075 AT * 10 18/20 AT AT AT AT AT AT AT GT TT AT
130746 CA * 15 28/30 CA CT CA CA CA CA CA AA CA CA CA CA CA CA CA
135572 GT * 18 33/36 GT GT GC TT GT GT GT GT GT GT GT GT GT GT GT GT GT GG
150503 GT * 12 22/24 GT CT GT AT GT GT GT GT GT GT GT GT
151669 CA * 10 18/20 CA CA CA CA CA CA CA TA CA TA
154925 TG * 15 28/30 TG CA TG TG TG TG TG TG TG TG TG TG TG TG TG
157111 TG * 11 20/22 TG TG CG TG TG TG TG TA TG TG TG
160185 TG * 11 20/22 TG TG CG TG TG TG TG AG TG TG TG
162202 CA * 12 22/24 CA CA CA CA CA CA CA TA CA CA AA CA
162749 AT * 13 24/26 AT AA AT AT AT AT AT AT AT AT TT AT AT
165990 TG * 17 31/34 TG TA TG TG TG TG TG TG TG TG TG TG TG TG TG TG GA
176124 CA * 11 20/22 CA TA CA CA CA TA CA CA CA CA CA
178151 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AG AC AC GC
180245 AT * 15 27/30 AT AT AT AC TT AT AT AT AT AT AT AT AT AT TT
209350 AT * 11 20/22 AT AT AT AT AT AC GT AT AT AT AT
210565 AC * 10 18/20 AC AA AC AC AA AC AC AC AC AC
211762 TG * 16 29/32 TG TG TG TG CG TG TG TA TG TG TG TG TG TG TG TT
217517 TG * 10 18/20 TG TG TG CG CG TG TG TG TG TG
218517 AT * 16 30/32 AT AT AT AT AT AT AA AT AT AT AT AT AT AT GT AT
240250 CA * 13 24/26 CA CT CA CA GA CA CA CA CA CA CA CA CA
255438 GT * 10 18/20 GT CT GT GT GT GT GT GT GT GA
-----------------------------------------------------------------------------------------
Total sequence length......................... 256628
Total number of repeats detected.............. 34
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 2 0 0 3 9 4 2 1 0 0 0
15 to 19 2 0 0 0 0 2 3 1 1 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 6 2 0 0 3 11 7 3 2 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
6 AT + 2 TA = 8
0 AG + 0 GA + 0 CT + 2 TC = 2
3 GT + 7 TG + 11 CA + 3 AC = 24
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7296952|gb|AE003609.1|AE003609 Drosophila melanogaster genomic scaffold 142000013386055 section 2 of 63, complete sequence
Position Repeat Coverage Repeat
71004 CA * 16 29/32 CA CG CA CA CA CA CA CA CA CA CA CA CA CA GA GA
104383 GT * 10 18/20 GT GT TT GT GT GT GT GT GC GT
106557 CA * 10 18/20 CA CA CA CC CA CA CC CA CA CA
108466 TG * 10 18/20 TG TG TG CG TG TG TG TG AG TG
109383 CA * 10 18/20 CA CA CA CA CA CA CA CT CG CA
116099 GT * 10 18/20 GT GT GC GT GT GT GT GT GT GC
122976 GT * 12 22/24 GT GC AT GT GT GT GT GT GT GT GT GT
132741 TA * 16 29/32 TA TA TA TA TA TA TA TA TT TA TA TA TA TC TG TA
142617 AC * 12 23/24 AC AC AC AC AC TC AC AC AC AC AC AC
145473 AT * 10 18/20 AT CT AT AT AT AA AT AT AT AT
151911 CA * 10 18/20 CA CA CA CA GA CA CA CA CA CT
152137 AC * 11 20/22 AC AC AC TC AC AA AC AC AC AC AC
152360 CA * 11 20/22 CA CT CA CA CA CA CA CA CA GA CA
162839 GT * 11 20/22 GT TT GT GT GT GT GT GT TT GT GT
172939 AT * 10 18/20 AT TT AT AT AT AT AT AT AT GT
189601 GT * 15 27/30 GT GT GT GT AT TT GT GT GT GT GT GT GT GT GG
235820 AT * 16 29/32 AT AT AT AT TT AT AT AT AT AT AT AT AC AT AT AG
237871 AG * 13 24/26 AG AC AG AG AG AG AG AG AG AG AG CG AG
-----------------------------------------------------------------------------------------
Total sequence length......................... 254808
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 0 1 0 2 4 1 4 0 0 0 0
15 to 19 1 1 0 0 0 1 0 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 1 1 0 2 5 1 5 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 1 TA = 4
1 AG + 0 GA + 0 CT + 0 TC = 1
5 GT + 1 TG + 5 CA + 2 AC = 13
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7296901|gb|AE003608.1|AE003608 Drosophila melanogaster genomic scaffold 142000013386055 section 1 of 63, complete sequence
Position Repeat Coverage Repeat
10486 TA * 10 18/20 TA TA TA TA TT TA TA TA TA TT
66689 TA * 12 22/24 TA TA TA TA TA TA CA TA TA CA TA TA
69030 AC * 11 20/22 AC AC AC CC AC AC AC AC AC GC AC
78300 TA * 10 18/20 TA TA TA TA TA TA TG TA CA TA
80444 AT * 10 18/20 AT AC AT AC AT AT AT AT AT AT
83305 CA * 16 29/32 CA CA CA CA CA CA CA CA CA CA CA TA CA CG TA CA
96398 AC * 12 22/24 AC AC AC AC AC AC AC AT AC AT AC AC
103198 GT * 11 20/22 GT GT GC GT GT GT GT GT GT GT GC
123423 AT * 10 18/20 AT AT AT AT AT GT AC AT AT AT
133236 AG * 10 18/20 AG AT AG AG AG AG AG AG AG GG
139110 AG * 11 20/22 AG AG AG AG AG AG AG AG AG AG GA
152545 AC * 11 21/22 AC AG AC AC AC AC AC AC AC AC AC
152851 TG * 11 20/22 TG TG TG TG CG TG TG TG AG TG TG
167911 CT * 10 18/20 CT CT CT CT CT CT CT CT CT TG
168477 GT * 14 26/28 GT GT GT GT GT GT GT GA GT GT GT GT GC GT
206234 GT * 16 29/32 GT GT GT GT GT GT GT GT GT GC GT TT GT GT TT GT
209156 TA * 11 20/22 TA GA TA TA TA TA TA TA TA TA TT
213501 AT * 10 19/20 AT AT AT AT AT AT AT AT AT AG
216512 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA CA AG
217128 CA * 10 18/20 CA CA CA CA AA CA CA CA CA CG
217320 TA * 12 22/24 TA TA TA TA TA TA TA AA TA TA TA TC
217705 TA * 21 39/42 TA TC TA TA TA TA TA TA TA TA TA TA TA TA TA CA TA CA TA TA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 241429
Total number of repeats detected.............. 22
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 5 2 0 3 2 1 2 0 1 0 0
15 to 19 0 0 0 0 0 1 0 1 0 0 0 0
20 to 24 0 1 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 6 2 0 3 3 1 3 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 6 TA = 9
2 AG + 0 GA + 1 CT + 0 TC = 3
3 GT + 1 TG + 3 CA + 3 AC = 10
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289481|gb|AE002744.1|AE002744 Drosophila melanogaster genomic scaffold 142000013385704, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 12466
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289774|gb|AE002717.1|AE002717 Drosophila melanogaster genomic scaffold 142000013385965, complete sequence
Position Repeat Coverage Repeat
8657 TG * 15 28/30 TG TG TG TG TG TG TG TG TG TG TG TG TG TG GC
16685 CA * 11 21/22 CA CA CA CA CA CA CA CA CA CC CA
17188 TG * 16 29/32 TG TG TG TG TG TG TG TG TG TG TG TG TA TA TA TG
19487 CA * 11 20/22 CA CA CA CA CA CA CA CA TA CA TA
24241 TG * 10 18/20 TG TA TG TG TG TG TG TG TA TG
28601 GT * 16 29/32 GT GT GT GT GT GT GT GT GT GT GA GG GT GT GT GC
28904 TG * 10 18/20 TG AG TG TG CG TG TG TG TG TG
35271 CA * 10 18/20 CA AA CA CG CA CA CA CA CA CA
36190 TG * 14 26/28 TG TG TG TG TG TG TG TG TG TG TG TG TG GA
36494 GT * 12 22/24 GT GT GT GT GT GT TG GT GT GT GT GT
41261 GT * 15 27/30 GT TT GT GT GT GT GC GT GT GT GT GT GT GT GG
42646 TA * 11 20/22 TA AA TA TA TA TC TA TA TA TA TA
44236 GT * 12 22/24 GT GA GT AT GT GT GT GT GT GT GT GT
46350 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AC CC CC
-----------------------------------------------------------------------------------------
Total sequence length......................... 49759
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 1 0 0 1 3 3 2 0 0 0 0
15 to 19 0 0 0 0 0 0 2 2 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 1 0 0 1 3 5 4 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 1 TA = 1
0 AG + 0 GA + 0 CT + 0 TC = 0
4 GT + 5 TG + 3 CA + 1 AC = 13
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289076|gb|AE002718.1|AE002718 Drosophila melanogaster genomic scaffold 142000013385365, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 17155
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289643|gb|AE002735.1|AE002735 Drosophila melanogaster genomic scaffold 142000013385844, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1207
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7316091|gb|AE002725.1|AE002725 Drosophila melanogaster genomic scaffold 142000013386030, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7302154|gb|AE003783.1|AE003783 Drosophila melanogaster genomic scaffold 142000013386030 section 3 of 3, complete sequence
Position Repeat Coverage Repeat
42573 AG * 11 20/22 AG AG AG AG AG AG AG AG AG AT GG
-----------------------------------------------------------------------------------------
Total sequence length......................... 96018
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 0 1 0 0 0 0 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 0 1 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 0 TA = 0
1 AG + 0 GA + 0 CT + 0 TC = 1
0 GT + 0 TG + 0 CA + 0 AC = 0
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7302138|gb|AE003782.1|AE003782 Drosophila melanogaster genomic scaffold 142000013386030 section 2 of 3, complete sequence
Position Repeat Coverage Repeat
4987 CA * 11 20/22 CA CT CA CA CA CA CA CA CA CA CT
8022 AT * 10 18/20 AT AT AT AT AT AT AT AT AT TC
21589 TG * 10 18/20 TG TG TG TG TG TA TG TG TG AG
32836 TC * 15 27/30 TC TC TC TC TC TC TC TC TT TC TC TC TC TT CC
62491 AT * 12 22/24 AT AT AT AT GA AT AT AT AT AT AT AT
62516 AT * 11 20/22 AT AT AT GA AT AT AT AT AT AT AT
77336 AT * 10 18/20 AT AT AT AT AT AA AT AT AT AA
140960 TA * 12 22/24 TA TA TA TA TA GA TA TA TA TA TT TA
151789 CT * 13 24/26 CT CT CT CT CT TT CT CT CT TT CT CT CT
172383 TA * 11 20/22 TA CC TA TA TA TA TA TA TA TA TA
177486 TA * 13 24/26 TA TA TA TA TA TA TA TA CA AA TA TA TA
211621 TC * 18 33/36 TC TG TC GC TC TC TC TC TC TC TC TC TC TC TG TC TC TC
237889 TA * 10 18/20 TA TA TT AA TA TA TA TA TA TA
257913 AT * 10 18/20 AT AT AC AA AT AT AT AT AT AT
286627 AT * 10 18/20 AT AT AC AT AT AC AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 298276
Total number of repeats detected.............. 15
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 6 4 0 0 0 1 1 0 0 1 0 0
15 to 19 0 0 0 0 0 0 0 0 2 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 6 4 0 0 0 1 1 0 2 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
6 AT + 4 TA = 10
0 AG + 0 GA + 1 CT + 2 TC = 3
0 GT + 1 TG + 1 CA + 0 AC = 2
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7302115|gb|AE003781.1|AE003781 Drosophila melanogaster genomic scaffold 142000013386030 section 1 of 3, complete sequence
Position Repeat Coverage Repeat
11667 TA * 10 18/20 TA TA TG TA TT TA TA TA TA TA
41199 AT * 10 18/20 AT AT AT AT AT AA AT AC AT AT
62674 AT * 10 18/20 AT AT AT AT AT AT AT AT AG AA
73542 CA * 10 18/20 CA CA CG CA TA CA CA CA CA CA
74627 AT * 11 20/22 AT AT AT AT AT AT AT AC AC AT AT
108929 AT * 10 19/20 AT AT AT AT AT TT AT AT AT AT
116024 AT * 10 19/20 AT AT AT AT AT AT GT AT AT AT
135774 TA * 13 24/26 TA TA TC TA TA TA TG TA TA TA TA TA TA
153335 TA * 12 22/24 TA CA TA TA CA TA TA TA TA TA TA TA
177146 AT * 10 18/20 AT AA AT AA AT AT AT AT AT AT
209946 AT * 13 24/26 AT AT GT AT AT AT AT AT AT AC AT AT AT
220843 AT * 10 19/20 AT AT AT AT AT AC AT AT AT AT
221322 CT * 13 24/26 CT GT CT CT CT CT CT CT CT CT CT CT CC
226672 AT * 10 18/20 AT AT AT GT AT AT AA AT AT AT
226694 AT * 16 29/32 AT AT AT AA AT AT AT AT AC AT AT AT AT AT GT AT
232027 CT * 11 20/22 CT CT CT CT CT CT CC CT TT CT CT
247996 AT * 16 29/32 AT AT AT AA AT AT AT AT GT AT AT AT AT AT AT AG
248848 TA * 11 20/22 TA TA TG TA TA TA TA TA TA TA TT
305917 TG * 13 24/26 TG CA TG TG TG TG TG TG TG TG TG TG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 311786
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 9 4 0 0 0 1 1 0 0 2 0 0
15 to 19 2 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 11 4 0 0 0 1 1 0 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
11 AT + 4 TA = 15
0 AG + 0 GA + 2 CT + 0 TC = 2
0 GT + 1 TG + 1 CA + 0 AC = 2
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289058|gb|AE002603.1|AE002603 Drosophila melanogaster genomic scaffold 142000013385350, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 72803
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7288919|gb|AE002657.1|AE002657 Drosophila melanogaster genomic scaffold 142000013385232, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 3148
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289298|gb|AE002805.1|AE002805 Drosophila melanogaster genomic scaffold 142000013385551, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 12120
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289809|gb|AE002830.1|AE002830 Drosophila melanogaster genomic scaffold 142000013385997, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 4094
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289333|gb|AE002838.1|AE002838 Drosophila melanogaster genomic scaffold 142000013385578, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 3071
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289467|gb|AE002846.1|AE002846 Drosophila melanogaster genomic scaffold 142000013385691, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 2237
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289324|gb|AE002854.1|AE002854 Drosophila melanogaster genomic scaffold 142000013385570, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 15436
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289811|gb|AE003055.1|AE003055 Drosophila melanogaster genomic scaffold 142000013385999, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 2626
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289409|gb|AE002734.1|AE002734 Drosophila melanogaster genomic scaffold 142000013385644, complete sequence
Position Repeat Coverage Repeat
30629 TA * 13 24/26 TA TA TA TA TG AA TA TA TA TA TA TA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 31062
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 1 0 0 0 0 0 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 1 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 1 TA = 1
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 0 TG + 0 CA + 0 AC = 0
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289362|gb|AE002743.1|AE002743 Drosophila melanogaster genomic scaffold 142000013385604, complete sequence
Position Repeat Coverage Repeat
43033 AT * 10 18/20 AT AT AT AT AT AT AT AG AA AT
55865 TA * 10 18/20 TA TA TA TA TA AA TA AA TA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 83461
Total number of repeats detected.............. 2
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 1 0 0 0 0 0 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 1 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 1 TA = 2
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 0 TG + 0 CA + 0 AC = 0
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289584|gb|AE002927.1|AE002927 Drosophila melanogaster genomic scaffold 142000013385793, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 28019
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289577|gb|AE003312.1|AE003312 Drosophila melanogaster genomic scaffold 142000013385786, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1385
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289490|gb|AE002910.1|AE002910 Drosophila melanogaster genomic scaffold 142000013385713, complete sequence
Position Repeat Coverage Repeat
6292 TA * 11 20/22 TA TA TT TA TA TA TA TA TA TA TT
-----------------------------------------------------------------------------------------
Total sequence length......................... 67870
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 1 0 0 0 0 0 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 1 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 1 TA = 1
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 0 TG + 0 CA + 0 AC = 0
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289873|gb|AE002918.1|AE002918 Drosophila melanogaster genomic scaffold 142000013386041, complete sequence
Position Repeat Coverage Repeat
27069 AT * 10 18/20 AT GT AT AT AT AT TT AT AT AT
82591 TA * 16 29/32 TA TA TA TA TA TA TC AA TA TA TA TA TA TA TA TT
124586 TC * 12 22/24 TC TC TC TC TC TC TC TC TC TT TT TC
127542 AG * 15 27/30 AG AG AG AG AG AG AG AG AG AG AG AG AG TG TC
-----------------------------------------------------------------------------------------
Total sequence length......................... 181393
Total number of repeats detected.............. 4
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 0 0 0 0 0 0 0 1 0 0 0
15 to 19 0 1 1 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 1 1 0 0 0 0 0 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 1 TA = 2
1 AG + 0 GA + 0 CT + 1 TC = 2
0 GT + 0 TG + 0 CA + 0 AC = 0
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289120|gb|AE002745.1|AE002745 Drosophila melanogaster genomic scaffold 142000013385404, complete sequence
Position Repeat Coverage Repeat
10249 TG * 10 18/20 TG TG TG TG TG TG TG TG TA AG
-----------------------------------------------------------------------------------------
Total sequence length......................... 10548
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 0 0 0 0 0 1 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 0 0 0 0 0 1 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 0 TA = 0
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 1 TG + 0 CA + 0 AC = 1
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289373|gb|AE002862.1|AE002862 Drosophila melanogaster genomic scaffold 142000013385610, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1311
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7288961|gb|AE002870.1|AE002870 Drosophila melanogaster genomic scaffold 142000013385272, complete sequence
Position Repeat Coverage Repeat
158 CT * 10 18/20 CT CT CT CT CT CT CT CT CT TA
7939 AC * 10 18/20 AC AC AC AC AC AC AC AT AC AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 15414
Total number of repeats detected.............. 2
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 0 0 0 1 0 0 0 0 1 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 0 0 0 1 0 0 0 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 0 TA = 0
0 AG + 0 GA + 1 CT + 0 TC = 1
0 GT + 0 TG + 0 CA + 1 AC = 1
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289796|gb|AE002878.1|AE002878 Drosophila melanogaster genomic scaffold 142000013385984, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 6536
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289312|gb|AE002886.1|AE002886 Drosophila melanogaster genomic scaffold 142000013385559, complete sequence
Position Repeat Coverage Repeat
721 AT * 21 38/42 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AC GA AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 1135
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 0 0 0 0 0 0 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 1 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 0 TA = 1
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 0 TG + 0 CA + 0 AC = 0
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7288989|gb|AE002894.1|AE002894 Drosophila melanogaster genomic scaffold 142000013385295, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 10783
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289308|gb|AE002902.1|AE002902 Drosophila melanogaster genomic scaffold 142000013385556, complete sequence
Position Repeat Coverage Repeat
8231 AG * 12 22/24 AG AA AG AG AG AG AG AG AG AG AG CG
-----------------------------------------------------------------------------------------
Total sequence length......................... 23301
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 0 1 0 0 0 0 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 0 1 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 0 TA = 0
1 AG + 0 GA + 0 CT + 0 TC = 1
0 GT + 0 TG + 0 CA + 0 AC = 0
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Di-nucleotide repeats in Drosophila melanogaster Chromosome-Arm-2L Genomic Scaffolds
Minimum di-nucleotide repeating units = 10 (allowing maximum 10% mismatch)
Total 2137 repeats covering 46979 / 51334 base pairs
Length distribution of all di-nucleotide repeats
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
no. of repeat-units 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 >=50
total repeats 724 502 339 215 39 93 94 48 31 4 11 8 9 3 0 3 3 3 3 0 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Length distribution of all di-nucleotide repeats in range
no. of repeat-units 10-14 15-19 20-24 25-29 30-34 35-39 40-44 45-49 >=50
total repeats--> 1819 270 31 12 4 0 1 0 0
AT 317 37 1 3 2 0 0 0 0
TA 232 33 8 2 2 0 0 0 0
AG 74 10 0 1 0 0 0 0 0
GA 33 8 0 0 0 0 0 0 0
AC 196 31 0 1 0 0 0 0 0
CA 324 57 8 2 0 0 1 0 0
TG 297 39 4 2 0 0 0 0 0
GT 220 33 6 1 0 0 0 0 0
TC 60 8 2 0 0 0 0 0 0
CT 66 14 2 0 0 0 0 0 0
GC 0 0 0 0 0 0 0 0 0
CG 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------
Sequence-wise distribution of di-nucleotide repeats
Sequence Sequence-length total repeats detected
gi|7316101|gb|AE0026 0 bp 0
gi|7296218|gb|AE0035 301627 bp 8
gi|7296179|gb|AE0035 302473 bp 24
gi|7296139|gb|AE0035 299378 bp 16
gi|7296095|gb|AE0035 309388 bp 37
gi|7296066|gb|AE0035 306352 bp 29
gi|7296031|gb|AE0035 306573 bp 47
gi|7295986|gb|AE0035 324484 bp 43
gi|7295946|gb|AE0035 303356 bp 29
gi|7295900|gb|AE0035 295312 bp 54
gi|7295843|gb|AE0035 306436 bp 25
gi|7295809|gb|AE0035 295223 bp 23
gi|7295765|gb|AE0035 304383 bp 19
gi|7295742|gb|AE0035 307748 bp 37
gi|7295725|gb|AE0035 267576 bp 41
gi|7295692|gb|AE0035 304634 bp 21
gi|7295650|gb|AE0035 327242 bp 50
gi|7316108|gb|AE0026 0 bp 0
gi|7298777|gb|AE0036 117404 bp 7
gi|7298740|gb|AE0036 272526 bp 13
gi|7298706|gb|AE0036 267300 bp 16
gi|7298684|gb|AE0036 263704 bp 30
gi|7298667|gb|AE0036 247952 bp 20
gi|7298648|gb|AE0036 205045 bp 6
gi|7298621|gb|AE0036 266340 bp 19
gi|7298582|gb|AE0036 299476 bp 45
gi|7298553|gb|AE0036 263214 bp 18
gi|7298501|gb|AE0036 265023 bp 19
gi|7298465|gb|AE0036 231972 bp 22
gi|7298444|gb|AE0036 260897 bp 16
gi|7298430|gb|AE0036 270233 bp 16
gi|7298413|gb|AE0036 256054 bp 16
gi|7298410|gb|AE0036 251154 bp 13
gi|7298378|gb|AE0036 254383 bp 21
gi|7298369|gb|AE0036 261000 bp 21
gi|7298355|gb|AE0036 249742 bp 25
gi|7298316|gb|AE0036 258166 bp 29
gi|7298303|gb|AE0036 254674 bp 24
gi|7298270|gb|AE0036 264581 bp 29
gi|7298255|gb|AE0036 275242 bp 18
gi|7298233|gb|AE0036 240520 bp 29
gi|7298216|gb|AE0036 262205 bp 15
gi|7298191|gb|AE0036 266295 bp 29
gi|7298171|gb|AE0036 261527 bp 22
gi|7298162|gb|AE0036 264851 bp 15
gi|7298143|gb|AE0036 240197 bp 9
gi|7298121|gb|AE0036 272070 bp 54
gi|7298081|gb|AE0036 299556 bp 21
gi|7298054|gb|AE0036 267510 bp 36
gi|7298000|gb|AE0036 261590 bp 17
gi|7297983|gb|AE0036 253648 bp 45
gi|7297962|gb|AE0036 224205 bp 45
gi|7297938|gb|AE0036 245782 bp 25
gi|7297915|gb|AE0036 307911 bp 43
gi|7297877|gb|AE0036 264752 bp 32
gi|7297859|gb|AE0036 266057 bp 42
gi|7297846|gb|AE0036 244279 bp 37
gi|7297810|gb|AE0036 261329 bp 30
gi|7297758|gb|AE0036 276576 bp 27
gi|7297715|gb|AE0036 260791 bp 19
gi|7297628|gb|AE0036 270055 bp 19
gi|7297589|gb|AE0036 260794 bp 30
gi|7297545|gb|AE0036 265236 bp 60
gi|7297520|gb|AE0036 260624 bp 29
gi|7297497|gb|AE0036 248414 bp 35
gi|7297460|gb|AE0036 267547 bp 20
gi|7297438|gb|AE0036 262244 bp 19
gi|7297389|gb|AE0036 311009 bp 35
gi|7297341|gb|AE0036 266748 bp 15
gi|7297302|gb|AE0036 282125 bp 32
gi|7297264|gb|AE0036 268667 bp 13
gi|7297236|gb|AE0036 257296 bp 19
gi|7297210|gb|AE0036 267518 bp 25
gi|7297167|gb|AE0036 269823 bp 29
gi|7297129|gb|AE0036 259440 bp 26
gi|7297088|gb|AE0036 261872 bp 22
gi|7297037|gb|AE0036 260550 bp 19
gi|7297008|gb|AE0036 259961 bp 16
gi|7296978|gb|AE0036 256628 bp 34
gi|7296952|gb|AE0036 254808 bp 18
gi|7296901|gb|AE0036 241429 bp 22
gi|7289481|gb|AE0027 12466 bp 0
gi|7289774|gb|AE0027 49759 bp 14
gi|7289076|gb|AE0027 17155 bp 0
gi|7289643|gb|AE0027 1207 bp 0
gi|7316091|gb|AE0027 0 bp 0
gi|7302154|gb|AE0037 96018 bp 1
gi|7302138|gb|AE0037 298276 bp 15
gi|7302115|gb|AE0037 311786 bp 19
gi|7289058|gb|AE0026 72803 bp 0
gi|7288919|gb|AE0026 3148 bp 0
gi|7289298|gb|AE0028 12120 bp 0
gi|7289809|gb|AE0028 4094 bp 0
gi|7289333|gb|AE0028 3071 bp 0
gi|7289467|gb|AE0028 2237 bp 0
gi|7289324|gb|AE0028 15436 bp 0
gi|7289811|gb|AE0030 2626 bp 0
gi|7289409|gb|AE0027 31062 bp 1
gi|7289362|gb|AE0027 83461 bp 2
gi|7289584|gb|AE0029 28019 bp 0
gi|7289577|gb|AE0033 1385 bp 0
gi|7289490|gb|AE0029 67870 bp 1
gi|7289873|gb|AE0029 181393 bp 4
gi|7289120|gb|AE0027 10548 bp 1
gi|7289373|gb|AE0028 1311 bp 0
gi|7288961|gb|AE0028 15414 bp 2
gi|7289796|gb|AE0028 6536 bp 0
gi|7289312|gb|AE0028 1135 bp 1
gi|7288989|gb|AE0028 10783 bp 0
gi|7289308|gb|AE0029 23301 bp 1
--------------------------------------------------------------------------------------------------------
Total 22577126 bp 2137
--------------------------------------------------------------------------------------------------------
-------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
360 AT + 277 TA = 637
85 AG + 41 GA + 82 CT + 70 TC = 278
260 GT + 342 TG + 392 CA + 228 AC = 1222
0 GC + 0 CG = 0
-------------------------------------------------------------------------------
-------------------------------------------------------------------------------
Frequency distribution of di-nucleotides repeated for 20 times or more
6 AT + 12 TA = 18
1 AG + 0 GA + 2 CT + 2 TC = 5
7 GT + 6 TG + 11 CA + 1 AC = 25
0 GC + 0 CG = 0
-------------------------------------------------------------------------------
Total repeats >= 40 bp = 48
-------------------------------------------------------------------------------
© Division of Biochemical Sciences, National Chemical Laboratory, Pune 411008, INDIA