Di-Nucleotide Repeats in Genomic Sequences
Di-Nucleotide Repeats in
Drosophila melanogaster Chromosome-Arm-2L Genomic Scaffolds
Genomic Sequence:..
gi|7316101|gb|AE002638.1|AE002638 Drosophila melanogaster genomic scaffold 142000013386046, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7296218|gb|AE003590.1|AE003590 Drosophila melanogaster genomic scaffold 142000013386046 section 16 of 16, complete sequence
Position Repeat Coverage Repeat
1729 TA * 10 18/20 TA AA TA TC TA TA TA TA TA TA
3551 AT * 12 23/24 AT AT AT AT AT AT AT AT AT AT AT AG
47554 TG * 10 18/20 TG AC TG TG TG TG TG TG TG TG
49231 TG * 11 20/22 TG CG TG TG TG TG TC TG TG TG TG
60820 TG * 10 18/20 TG TG TA TG TG TG TG TG AG TG
78288 TG * 10 18/20 TG TG TG TG TG TG CG TG TG TT
103322 AT * 13 24/26 AT CT AT AT AT AT AT AT GT AT AT AT AT
168538 AT * 12 22/24 AT GC AT AT AT AT AT AT AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 301627
Total number of repeats detected.............. 8
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 1 0 0 0 0 4 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 1 0 0 0 0 4 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 1 TA = 4
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 4 TG + 0 CA + 0 AC = 4
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7296179|gb|AE003589.1|AE003589 Drosophila melanogaster genomic scaffold 142000013386046 section 15 of 16, complete sequence
Position Repeat Coverage Repeat
14786 AG * 12 22/24 AG GG AG AG AG AG AA AG AG AG AG AG
84387 AC * 16 29/32 AC AA GC AC AC AC AC AC AC AC AC AC AC AC AC AG
89522 AT * 11 20/22 AT AT AT AC AT AT AC AT AT AT AT
90590 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA CG GA
95193 AG * 13 24/26 AG AG AA AC AG AG AG AG AG AG AG AG AG
97168 CA * 10 18/20 CA CA CA CA CA TA CA CA CT CA
99137 AC * 10 18/20 AC AC GC AC AC AC AC AA AC AC
101110 TG * 10 18/20 TG TA TA TG TG TG TG TG TG TG
101212 AG * 12 22/24 AG AG AG AG AG AG AG AG AG AG AG TT
107942 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA CA TT
110055 CT * 13 24/26 CT CT CT CT CT CT CG CT CT CT CT CT CC
121134 AG * 13 24/26 AG AG AG AG AG AG AA GG AG AG AG AG AG
121161 GA * 13 24/26 GA GA GA GA TA GG GA GA GA GA GA GA GA
124810 AG * 28 51/56 AG AG GG AG AG AG AG AG AG AG AG AG AG AG AG AG AG CG GG AG AG AG AG AG GG AG AG AA
129795 AT * 10 18/20 AT AC AT AT AC AT AT AT AT AT
141399 TG * 10 18/20 TG TG TG TG CG AG TG TG TG TG
163406 TA * 11 20/22 TA TA TA TA TT TA TT TA TA TA TA
163831 TG * 10 18/20 TG TG AG TA TG TG TG TG TG TG
198780 TA * 10 18/20 TA TA TA TA TA GT TA TA TA TA
253896 CT * 18 34/36 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT TA
260933 CT * 18 34/36 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT TA
271799 CA * 10 18/20 CA CA CA CG CA AA CA CA CA CA
293970 TG * 11 20/22 TG TG TG TA TG TG TG TA TG TG TG
299507 AT * 10 18/20 AT AT AT AT AT AT AT TT AT TT
-----------------------------------------------------------------------------------------
Total sequence length......................... 302473
Total number of repeats detected.............. 24
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 2 4 1 1 4 4 0 0 1 0 0
15 to 19 0 0 0 0 1 0 0 0 0 2 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 1 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 2 5 1 2 4 4 0 0 3 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 2 TA = 5
5 AG + 1 GA + 3 CT + 0 TC = 9
0 GT + 4 TG + 4 CA + 2 AC = 10
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7296139|gb|AE003588.1|AE003588 Drosophila melanogaster genomic scaffold 142000013386046 section 14 of 16, complete sequence
Position Repeat Coverage Repeat
17553 TG * 10 18/20 TG TG TG TG TG TG TG TG TG CC
25132 CA * 16 29/32 CA CA CA CA CA CA CA CA CA CA CA CC CA CA CA TG
51853 TC * 12 22/24 TC TC TT TC TC TC CC TC TC TC TC TC
78989 AT * 13 24/26 AT AT AT AT AT AT AT AT AT AT AT AT CC
93707 AG * 10 18/20 AG AG AG AG AG AG AG AG AG CC
94073 GT * 10 18/20 GT GA GT GT GT GT GT GT GA GT
151017 TG * 11 20/22 TG TG TA TG TG TG TG TG TG TG AG
151041 TG * 10 18/20 TG TG TG TG TG CG TG TG TC TG
167356 AT * 11 20/22 AT AT GT AT AT AT AT GT AT AT AT
217929 TC * 12 23/24 TC TC TC TC TC TC TC TC TC TC TC TG
218173 TC * 11 20/22 TC TC TC TT TC TC TC TC TC TC CC
225880 AG * 10 19/20 AG AG AG AG AG GG AG AG AG AG
251756 TA * 10 18/20 TA TA TA TA TT TA TA TA TA TT
252242 CA * 12 23/24 CA CA CA CA CA CA CA CA CA CA CA TA
276588 AT * 11 20/22 AT AT AT AT AC AA AT AT AT AT AT
291117 CT * 11 21/22 CT CT CT CT CT CT CT CT CT CT CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 299378
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 1 2 0 0 1 3 1 3 1 0 0
15 to 19 0 0 0 0 0 1 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 1 2 0 0 2 3 1 3 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 1 TA = 4
2 AG + 0 GA + 1 CT + 3 TC = 6
1 GT + 3 TG + 2 CA + 0 AC = 6
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7296095|gb|AE003587.1|AE003587 Drosophila melanogaster genomic scaffold 142000013386046 section 13 of 16, complete sequence
Position Repeat Coverage Repeat
7414 AG * 10 18/20 AG AG AG AG AG AG AG AG AG CT
13695 AG * 10 18/20 AG AG AG AG AG AG AG AG AG CT
16822 AC * 10 18/20 AC TC AC AC AC AC TC AC AC AC
21610 AC * 14 26/28 AC AC AC AC AC AC AC AC AC AC AC AC TC AA
47498 CA * 10 19/20 CA CA CA CA CA CA CA CA CA CT
93344 TA * 12 23/24 TA TA TT TA TA TA TA TA TA TA TA TA
96874 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA CA TG
105406 CA * 10 18/20 CA AA CA CA CA CT CA CA CA CA
117026 AT * 10 18/20 AT AT AT AC AT AT GT AT AT AT
119315 AT * 11 20/22 AT AT AC AT AA AT AT AT AT AT AT
144230 CA * 10 19/20 CA CA CA CA CA CA CA CA CA CC
150657 AT * 11 20/22 AT AC AT AT AT AT AT AC AT AT AT
159461 AC * 11 20/22 AC GC AT AC AC AC AC AC AC AC AC
179682 AT * 12 22/24 AT AT AT AT AT AT AT AT AT TT GT AT
185795 CA * 15 28/30 CA CA CA CA CA CA CA CA CA CA CG CG CA CA CA
186757 CA * 11 20/22 CA CC CA CA CA CA CG CA CA CA CA
210981 TG * 13 24/26 TG CG AG TG TG TG TG TG TG TG TG TG TG
222563 AT * 10 18/20 AT AT AT AT AT AT AT AT GT AA
224224 TA * 13 24/26 TA CA TA TA TA TA CA TA TA TA TA TA TA
226145 CT * 10 18/20 CT CT CT CT CT CT CT CT CC CC
244471 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CA TT
251415 TA * 10 18/20 TA TA TG TA TT TA TA TA TA TA
260897 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA GA CA CT
268355 GT * 12 22/24 GT GT GC GT GT GT GT GT GT GT GT GC
271623 TA * 10 18/20 TA TA TA TA TA TA TA TA TA GT
283218 AC * 11 20/22 AC AC AC AC AC TC AC AC AC AC AT
283880 CA * 10 18/20 CA CA CA CA CA CA CA CG CA AA
284327 TG * 10 18/20 TG TG TG TG TG TG TG TG TG CC
284398 GT * 10 18/20 GT TT GT GT CT GT GT GT GT GT
287659 TG * 17 31/34 TG TG CG TA TG TG TG TG TG TG TG TG TG TG TG CG TG
288276 CA * 12 22/24 CA CA CA CA CA CA CA CA TA CA CA TA
289576 CA * 11 20/22 CA CA CA AA CG CA CA CA CA CA CA
289632 GT * 10 18/20 GT CA GT GT GT GT GT GT GT GT
293085 TG * 10 18/20 TG TG TG TG TG TG TG TA TT TG
293915 CT * 15 28/30 CT CC CT CT CT CT CT CT CT CA CT CT CT CT CT
300465 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA TG CA
306535 CA * 15 27/30 CA CA GA CA CA CA CA CA CA CA CA CA CA CG CG
-----------------------------------------------------------------------------------------
Total sequence length......................... 309388
Total number of repeats detected.............. 37
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 4 2 0 4 11 3 3 0 1 0 0
15 to 19 0 0 0 0 0 2 1 0 0 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 4 2 0 4 13 4 3 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 4 TA = 9
2 AG + 0 GA + 2 CT + 0 TC = 4
3 GT + 4 TG + 13 CA + 4 AC = 24
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7296066|gb|AE003586.1|AE003586 Drosophila melanogaster genomic scaffold 142000013386046 section 12 of 16, complete sequence
Position Repeat Coverage Repeat
2382 TG * 12 22/24 TG TG CG AG TG TG TG TG TG TG TG TG
9285 GT * 10 18/20 GT AC GT GT GT GT GT GT GT GT
73471 CA * 17 32/34 CA CA CA CA CA CA CA CA CG CA CA CA CA CT CA CA CA
129502 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA CA AC
135351 TA * 15 28/30 TA TA TA TA TA TA TA TA TA TA TA TA TA CA TT
141737 CT * 10 18/20 CT CT CT CT CG CT CT CC CT CT
155204 TG * 10 18/20 TG TG TG TG TG TG TG TG TG CT
194645 GT * 11 20/22 GT GT GT GT GT GT GT GT GT GT TC
197077 TC * 11 20/22 TC CC TC TC TC TC TC TC TC TA TC
199116 CT * 12 22/24 CT CT CT CT GT CA CT CT CT CT CT CT
199629 TA * 13 24/26 TA AT TA TA TA TA TA TA TA TA TA TA TA
200260 GA * 12 22/24 GA AA GA GA GA GA GA GA GA GA GA AA
204247 CA * 11 20/22 CA CT CA CA CA CA CT CA CA CA CA
208954 AG * 11 20/22 AG AG GG AG AG AT AG AG AG AG AG
213523 CA * 11 20/22 CA CA CA CA CA CA CA CA CA TA GA
215247 CA * 11 20/22 CA CA CA CA CG CA AA CA CA CA CA
221885 GT * 10 18/20 GT GT GT GT GT GT GT GT GC TT
222794 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TT TA
239931 CA * 11 20/22 CA CA CT CG CA CA CA CA CA CA CA
241126 GT * 10 18/20 GT CT AT GT GT GT GT GT GT GT
261256 TG * 16 29/32 TG TG TG TG TG TT TG TG TG TG TG TG TG TG TG GC
262821 TG * 18 33/36 TG TG TC TC TG TG TG TG TG TG TG TG TG TG TG TG TG CG
270347 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TA TA
284280 CA * 11 20/22 CA CA CA CA CA CA CA AA TA CA CA
292392 CA * 11 20/22 CA CA CA CA CA CA CA CA CG CA TA
293789 CA * 11 20/22 CA CA CA CA CA CA CA CA CG CA CT
293841 AC * 10 18/20 AC AC AC AC AC AC AC AC AG GC
297029 TG * 11 20/22 TG TA AG TG TG TG TG TG TG TG TG
304177 CA * 15 27/30 CA CA CA CA CA CA CA CA CA CA CC TA CA CA CT
-----------------------------------------------------------------------------------------
Total sequence length......................... 306352
Total number of repeats detected.............. 29
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 1 1 1 1 8 5 4 1 2 0 0
15 to 19 0 1 0 0 0 2 2 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 2 1 1 1 10 7 4 1 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 2 TA = 2
1 AG + 1 GA + 2 CT + 1 TC = 5
4 GT + 7 TG + 10 CA + 1 AC = 22
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7296031|gb|AE003585.1|AE003585 Drosophila melanogaster genomic scaffold 142000013386046 section 11 of 16, complete sequence
Position Repeat Coverage Repeat
2879 AT * 10 19/20 AT AT AT AT AT AT AT AT AT TT
5233 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AC AC TT
9004 TC * 11 20/22 TC TC CC TC TC TC TC TC TC TC GC
10458 AC * 11 20/22 AC AA AC AC AC AC AC AC AC AC CC
16288 TG * 13 24/26 TG TG TG TG TG TA TG TG TG TG TG GG TG
18154 CA * 17 31/34 CA CG CG CA CA CA CA CA CA CA CA CA CA CA CG CA CA
34374 TG * 11 20/22 TG TG TG TG TG TG TA TG TG TG TT
34485 CA * 10 18/20 CA CA CA CA CA CA CA CA TG CA
41426 AC * 16 29/32 AC AC TC CC AC AC AC AC AC AC AC AC AC AC AC AA
56163 CA * 11 20/22 CA CA CA CA CA CA CA AA CA CA GA
56586 AC * 10 18/20 AC AC AC AC AA AA AC AC AC AC
97527 TA * 15 28/30 TA TA TA TA TA TA TA TA TA TA AG TA TA TA TA
109293 CT * 10 18/20 CT CT CG CT CT CT CT CT CT CG
125137 AT * 12 22/24 AT AT AT AT AT AT AT AT AT TT AT AC
130140 TA * 12 22/24 TA AA TA TA TA TA TA TA TA GA TA TA
142990 GT * 10 18/20 GT AT GT GT GT GT GT GT GT TT
153038 TA * 10 18/20 TA CA TA TA TA TA TA TA TA TT
153783 CA * 11 21/22 CA CA CA CA CA CA CA CA CA CA CT
155347 AC * 15 27/30 AC AG AC AC AC AC AC AC AC AC AC AC AC AA AT
160468 AG * 10 18/20 AG AG AG AG AG AG AG AG AG CT
168472 AG * 10 18/20 AG AG AG AG AG AG AG AG AG CT
175570 GT * 12 22/24 GT AT GT GT GT GC GT GT GT GT GT GT
182143 TG * 10 18/20 TG TG TG TG TG TG TG TG CG TA
182689 AT * 13 25/26 AT AT AT AT AT AC AT AT AT AT AT AT AT
184355 CT * 13 25/26 CT CT CT CT CT CT CT CT CT CT CT CG CT
186471 AT * 10 19/20 AT AT AT AT AT AT AT GT AT AT
189331 CT * 11 20/22 CT CT CT CT CG CT CT CT CA CT CT
193461 GT * 10 18/20 GT TT GT GT GT GT GT GT GC GT
195517 CA * 17 32/34 CA CA CA CA CA CA CA CA CA CA CA CA TA AA CA CA CA
196490 AG * 11 20/22 AG AG AG AG AG AG AA AG AG AG CG
196804 CT * 10 18/20 CT CT TT CT CT CA CT CT CT CT
197651 TC * 12 23/24 TC TC TC TC TC TC TC TC TC TC TC TG
198564 TG * 10 18/20 TG TG TG TG TG TG CT TG TG TG
198755 CT * 12 22/24 CT GT CT CA CT CT CT CT CT CT CT CT
198780 TC * 11 20/22 TC TC TC TC TC TC TC TC TA CC TC
206832 AT * 11 20/22 AT AT AT AT AT AT AT AT AT CT GT
211097 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TT GG TG
211952 TG * 10 19/20 TG TG TG TG TG TG TG TG TG AG
212840 AT * 12 22/24 AT AT AT AT AT AT AC AT AT AC AT AT
212866 AT * 17 31/34 AT AT AT AT AT AT AC AT AT AT AT AC AT AT AC AT AT
218140 CA * 11 21/22 CA AA CA CA CA CA CA CA CA CA CA
220447 AC * 15 27/30 AC AC AC AC AC AC AA AC AC AC AC AC AG AC AG
220754 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT GT AC
229665 AG * 11 20/22 AG CG AG AG CG AG AG AG AG AG AG
257431 TG * 10 18/20 TG AG TG TG TG TG TG TG TG CG
272393 GT * 10 18/20 GT GT GT GT GT GT GT GC TT GT
289294 AT * 32 59/64 AT GT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT AT AT AT TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 306573
Total number of repeats detected.............. 47
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 6 2 4 0 3 4 7 5 3 5 0 0
15 to 19 1 1 0 0 3 2 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 1 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 8 3 4 0 6 6 7 5 3 5 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
8 AT + 3 TA = 11
4 AG + 0 GA + 5 CT + 3 TC = 12
5 GT + 7 TG + 6 CA + 6 AC = 24
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295986|gb|AE003584.1|AE003584 Drosophila melanogaster genomic scaffold 142000013386046 section 10 of 16, complete sequence
Position Repeat Coverage Repeat
3740 GA * 11 20/22 GA GA GC GA CA GA GA GA GA GA GA
4232 GT * 10 18/20 GT GT GT GT GT GT GT CT GT TT
55413 TG * 17 31/34 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG AG GC
85826 AT * 12 22/24 AT AT AT AT CT AT AT AT AT AT AA AT
103590 GT * 10 18/20 GT GA GT GT GT GT GT GT TT GT
108058 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AT TC
109756 GT * 13 24/26 GT GT GT GT GT GT GT GT GC GT GT GT GC
118941 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
118965 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
118989 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
119013 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
119037 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
119061 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
119085 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
119109 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
119150 TA * 11 20/22 TA TA TA CA TA TA TA CA TA TA TA
119189 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
119213 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
119253 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
119277 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
119301 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
119325 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
132299 TG * 13 24/26 TG TA TG TG TG TG TG TG TG TG TG TG TA
135044 AC * 10 18/20 AC AC AC TC AC AC AC TC AC AC
136506 CA * 14 26/28 CA CA CA CA CA CA CA TA CA CA TA CA CA CA
145674 AG * 10 18/20 AG AG AG AG AG AG AG AG AG GT
147482 GT * 10 18/20 GT GT TT GT CT GT GT GT GT GT
151028 GT * 12 22/24 GT GT GT GT GT GT GT GC GT AT GT GT
156655 AT * 12 22/24 AT AT AT AT AT AT AT AT AT AT AT GA
160378 CA * 11 20/22 CA CC CA CA CA CA CA CA CA CA CT
163719 CA * 11 20/22 CA CA CA CC CA CA CA CC CA CA CA
170765 TG * 11 20/22 TG TG TG TG TG CG TG TG TC TG TG
171953 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AC TT
178653 AT * 10 18/20 AT AT AT AT AT AT AT AT TT AA
184761 GT * 11 20/22 GT GT GT GT GT TT GT GT GT GT GC
202951 CA * 13 25/26 CA CA CA CC CA CA CA CA CA CA CA CA CA
207260 TG * 12 22/24 TG TG TG TG AG TG TG TG TG TG TG AG
208800 TG * 10 18/20 TG TG TG TG TG TG TG TG CG AG
208905 AG * 10 18/20 AG AG AA AG AG AG TG AG AG AG
233009 GT * 15 27/30 GT GA GT GT GT GT GT GT GT GT GA GT GT GT TT
247192 CA * 25 46/50 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CC CA CA CA CA CA GA TG
318707 TA * 10 19/20 TA TA TA TA TA TA TA TT TA TA
318975 AT * 11 20/22 AT AT AC AT AT AT AT AT AT AT TT
-----------------------------------------------------------------------------------------
Total sequence length......................... 324484
Total number of repeats detected.............. 43
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 19 2 2 1 2 4 4 6 0 0 0 0
15 to 19 0 0 0 0 0 0 1 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 1 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 19 2 2 1 2 5 5 7 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
19 AT + 2 TA = 21
2 AG + 1 GA + 0 CT + 0 TC = 3
7 GT + 5 TG + 5 CA + 2 AC = 19
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295946|gb|AE003583.1|AE003583 Drosophila melanogaster genomic scaffold 142000013386046 section 9 of 16, complete sequence
Position Repeat Coverage Repeat
3611 TG * 15 27/30 TG AG TG TG TG TG TG TG TG TG TG TG TT TG GG
4268 AC * 11 21/22 AC AC AC AC AC AC AC AC AC AC TC
5141 AC * 10 18/20 AC AG AC TC AC AC AC AC AC AC
7099 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG AG TC
7779 GT * 15 27/30 GT GT GT GC GA GT GT GT GT GT GT GT GT GT TT
10321 GT * 12 22/24 GT AT AT GT GT GT GT GT GT GT GT GT
24256 GT * 13 24/26 GT GT AT CT GT GT GT GT GT GT GT GT GT
27250 CA * 11 20/22 CA CA CA CA CT CA CA CA CA CC CA
28391 AT * 10 18/20 AT AT GT AT AT TT AT AT AT AT
73711 TG * 10 18/20 TG TG TG TG TG TG TG TG TG GC
84751 GT * 11 20/22 GT GT GT GT GC GT GT GT AT GT GT
101598 AT * 12 22/24 AT AT AT AT TT AT AT AA AT AT AT AT
106663 GT * 13 24/26 GT AT GT GT GT GT GT GT GT GT GT GT GC
121660 TA * 10 18/20 TA TT TA TA TA TA TA TG TA TA
129423 CA * 10 18/20 CA CC CA CA CC CA CA CA CA CA
175560 TA * 12 22/24 TA TA TA CT TA TA TA TA TA TA TA TA
191132 GT * 12 22/24 GT GT GA GT GA GT GT GT GT GT GT GT
214703 AC * 15 28/30 AC AC AC AC AC AC AC AC AC AC AC AC AC AC CA
218824 CA * 12 22/24 CA CA AA CA CA CA GA CA CA CA CA CA
233606 GT * 10 18/20 GT GT TT GT TT GT GT GT GT GT
246023 AT * 11 20/22 AT AC AT AT AT AC AT AT AT AT AT
255010 GT * 10 18/20 GT GT GT TT GT GT GT GT GT GA
258456 TG * 13 24/26 TG TG TG TG GG TG GG TG TG TG TG TG TG
258646 GT * 11 21/22 GT GT GT GT GT GT GT TT GT GT GT
259212 CA * 10 18/20 CA CA CA CA CA CA CA CG CA TA
260574 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG TG CT
261345 AT * 11 20/22 AT AT AT AT TT AT AT AT AT AT GT
266819 CA * 10 18/20 CA CA CA CA CA CA CA CT GA CA
292188 CT * 17 31/34 CT CG CT CA CT CT CT CT CT CT CT CT CT CT CT CT CC
-----------------------------------------------------------------------------------------
Total sequence length......................... 303356
Total number of repeats detected.............. 29
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 2 0 0 2 5 4 8 0 0 0 0
15 to 19 0 0 0 0 1 0 1 1 0 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 2 0 0 3 5 5 9 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 2 TA = 6
0 AG + 0 GA + 1 CT + 0 TC = 1
9 GT + 5 TG + 5 CA + 3 AC = 22
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295900|gb|AE003582.1|AE003582 Drosophila melanogaster genomic scaffold 142000013386046 section 8 of 16, complete sequence
Position Repeat Coverage Repeat
438 TG * 15 27/30 TG TG TG TG AG TG TG TG TG TG TG TG TG TG GT
25245 GA * 11 20/22 GA CA GA GA GA GA GA GA GG GA GA
31098 CT * 12 22/24 CT CC CA CT CT CT CT CT CT CT CT CT
31187 AC * 10 18/20 AC AC AC AG AC AC AC AC AC AA
31282 CT * 11 20/22 CT CT CT CA CT CA CT CT CT CT CT
31307 TC * 12 22/24 TC TC TC TC TC TC TC TC TC TT CC TC
32666 AG * 12 23/24 AG AA AG AG AG AG AG AG AG AG AG AG
36021 AT * 13 24/26 AT AT AT AT GT AT AT AT AT AT GT AT AT
39839 CA * 10 18/20 CA AA TA CA CA CA CA CA CA CA
41880 AT * 15 27/30 AT AT AA AC AT AT AT AT AT AT AT AT AT AT AA
44989 TA * 12 22/24 TA TA TA TA TA TA TA TA TC CA TA TA
49431 CA * 16 29/32 CA CA CA CA CA CA CA CA CA CC CA CA AA CA CA TA
51074 AT * 10 19/20 AT AT AT AT AT AT AT AT AT AG
56792 AC * 14 26/28 AC AC AC AC AC AC AC AC CC AC AC AC AC TC
74878 GA * 11 21/22 GA GA GA GA GA GA GA GC GA GA GA
93735 AC * 10 18/20 AC GC GC AC AC AC AC AC AC AC
99153 AT * 10 18/20 AT AT AT AT GT AT AT AT AT AA
100965 GT * 11 20/22 GT GT GT GT GT GC GT GC GT GT GT
109075 TG * 11 21/22 TG TG TG TG TG TG TG TT TG TG TG
109203 GT * 13 25/26 GT GT GT GT GT GT GT GT GT GT GT GT GA
119795 CA * 10 18/20 CA CA CA CA CA CA CA CA CT GA
124481 AG * 16 29/32 AG AG AA AG AG AC AG AG AG AG AG AG AG AG AA AG
128245 TC * 13 24/26 TC CC TC TC TC TC GC TC TC TC TC TC TC
135366 CA * 11 21/22 CA CA CA CA CA CA CA CA AA CA CA
138164 TG * 13 24/26 TG TG TG TG TG TG TG TG AG TG TG TG TT
140185 CA * 17 31/34 CA CA CA CA CA CA TA CA CA CA CA CA CA CA CT CA CG
141825 TG * 11 21/22 TG CG TG TG TG TG TG TG TG TG TG
148914 AT * 17 31/34 AT AC AT AT AT AT AT AT AT AT AT AT AT AT AA AT GT
169071 AC * 11 20/22 AC AA AC AC AC AC TC AC AC AC AC
184267 TC * 10 18/20 TC GC TC TC TC TC TC TC TC TT
199025 AC * 10 18/20 AC AC TC AC AC AC AC AC AC AA
209685 TG * 11 20/22 TG AG TG TG TG TG TG TG TG TG GG
213616 AC * 10 18/20 AC AC GC AC AC AC CC AC AC AC
217506 CA * 10 18/20 CA AA CA CA CA CA CG CA CA CA
226692 TA * 13 24/26 TA TA TA TA TA TG TA TA TA TG TA TA TA
239358 TG * 11 20/22 TG TG TG TG TG TG TG TG TG GC TG
263681 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
263705 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
263729 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
263753 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
263777 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
263801 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
263825 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
263849 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
263873 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
263906 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
263930 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
263954 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
267252 GT * 12 22/24 GT GT GT GT GT GT GT GT GT AA GT GT
274569 AC * 11 21/22 AC AC TC AC AC AC AC AC AC AC AC
285003 GT * 10 18/20 GT GT GT GT GG GT AT GT GT GT
287143 TG * 13 24/26 TG GT TG TG TG TG TG TG TG TG TG TG TG
287528 CA * 10 18/20 CA CA CC CA CT CA CA CA CA CA
291836 CA * 11 20/22 CA CA CT CA CA GA CA CA CA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 295312
Total number of repeats detected.............. 54
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 15 2 1 2 7 6 6 4 3 2 0 0
15 to 19 2 0 1 0 0 2 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 17 2 2 2 7 8 7 4 3 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
17 AT + 2 TA = 19
2 AG + 2 GA + 2 CT + 3 TC = 9
4 GT + 7 TG + 8 CA + 7 AC = 26
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295843|gb|AE003581.1|AE003581 Drosophila melanogaster genomic scaffold 142000013386046 section 7 of 16, complete sequence
Position Repeat Coverage Repeat
24395 AT * 10 18/20 AT AT GT AT AT GT AT AT AT AT
25411 TA * 12 22/24 TA CA TA TA TG TA TA TA TA TA TA TA
55439 AT * 11 20/22 AT AA AT AT AT AT AT AT CT AT AT
77982 AC * 14 26/28 AC AT AC AC AC AC AC AC AC AC AG AC AC AC
157151 TA * 15 27/30 TA TA TA TA TA TA TA TA TA TA TA TC AA TA AA
171508 TC * 10 18/20 TC TC TC TC TC TC TC TG AC TC
178330 CA * 11 20/22 CA GA CA CA CA CA CA CA CA CG CA
178456 GA * 11 20/22 GA GA GA CA GA GA GA GA GA GC GA
179152 TG * 10 18/20 TG TG TG CT TG TG TG TG TG TG
182686 TA * 12 22/24 TA TA TA TA TA AA AA TA TA TA TA TA
191555 GT * 14 26/28 GT GT GT GT GT TT GT GT GT GT GT GT GA GT
195293 TG * 11 20/22 TG CG AG TG TG TG TG TG TG TG TG
199675 GA * 10 19/20 GA TA GA GA GA GA GA GA GA GA
210547 GT * 12 23/24 GT GT GT GT GT GT GT GT AT GT GT GT
214061 CT * 10 18/20 CT CT TT CT CT CT CT CT CT TT
236332 CT * 12 22/24 CT CT CT CG CT CA CT CT CT CT CT CT
237745 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TG TG TG TG TA GA
242171 CA * 11 20/22 CA CA AA CA CA CA CA CA CA CA CG
243563 AT * 12 22/24 AT AT CT AT AT AT AT AC AT AT AT AT
249680 AC * 11 20/22 AC CC AA AC AC AC AC AC AC AC AC
252833 TA * 10 18/20 TA TA GA TA TA GA TA TA TA TA
285090 AT * 11 20/22 AT TT CT AT AT AT AT AT AT AT AT
287375 AT * 14 26/28 AT AT AT AT AT AC AT AT AT AT AT AT AT AC
290713 AT * 10 18/20 AT TT AT AT AT GT AT AT AT AT
303867 AT * 10 18/20 AT TG AT AT AT AT AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 306436
Total number of repeats detected.............. 25
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 7 3 0 2 2 2 2 2 1 2 0 0
15 to 19 0 1 0 0 0 0 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 7 4 0 2 2 2 3 2 1 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
7 AT + 4 TA = 11
0 AG + 2 GA + 2 CT + 1 TC = 5
2 GT + 3 TG + 2 CA + 2 AC = 9
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295809|gb|AE003580.1|AE003580 Drosophila melanogaster genomic scaffold 142000013386046 section 6 of 16, complete sequence
Position Repeat Coverage Repeat
6790 AC * 12 22/24 AC CC AC AC AC AC AC AC AC AC AC AT
7456 TG * 10 18/20 TG CG TA TG TG TG TG TG TG TG
9974 TA * 12 23/24 TA TA AA TA TA TA TA TA TA TA TA TA
11228 AT * 11 20/22 AT AT AT AA AA AT AT AT AT AT AT
30193 GT * 11 20/22 GT AT GT GT GT GT GT GT GT GT GA
80169 CA * 18 34/36 CA CA CG CA CG CA CA CA CA CA CA CA CA CA CA CA CA CA
89018 AG * 10 18/20 AG AA AG AG AT AG AG AG AG AG
90232 CA * 10 19/20 CA CA CA CA CA CA CA CA CA CG
92488 TG * 10 18/20 TG CC TG TG TG TG TG TG TG TG
96054 AT * 10 18/20 AT AT CT AT AT AT GT AT AT AT
96407 AG * 16 29/32 AG AG AG AG AG AG AG AA AG AG AG AG AG AG AG CA
126116 TA * 11 20/22 TA TA TA TG TA TA TA TA CA TA TA
136560 CA * 10 18/20 CA CA CA CA CT CA AA CA CA CA
147708 CA * 10 18/20 CA CA CA CA CA CA CA TA TA CA
179984 TA * 10 18/20 TA TA TA TA TG TG TA TA TA TA
183111 AT * 12 22/24 AT AT AT AT AT AC AT AT AT AC AT AT
193123 CA * 10 19/20 CA CA TA CA CA CA CA CA CA CA
214958 GA * 18 33/36 GA AA GA GA GA GA GA GA GA GA GA GA GA GA GA GT GA AA
230049 TG * 11 20/22 TG TG CG TG TG TG TG TG TG TG TT
233228 CA * 11 20/22 CA CA CA CA CA CA CA CG CA CG CA
252516 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CG AA
253941 CA * 10 18/20 CA CA CA CA CC CG CA CA CA CA
279937 TG * 10 18/20 TG TC CG TG TG TG TG TG TG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 295223
Total number of repeats detected.............. 23
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 3 1 0 1 7 4 1 0 0 0 0
15 to 19 0 0 1 1 0 1 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 3 2 1 1 8 4 1 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 3 TA = 6
2 AG + 1 GA + 0 CT + 0 TC = 3
1 GT + 4 TG + 8 CA + 1 AC = 14
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295765|gb|AE003579.1|AE003579 Drosophila melanogaster genomic scaffold 142000013386046 section 5 of 16, complete sequence
Position Repeat Coverage Repeat
6323 AG * 11 20/22 AG AC AG AT AG AG AG AG AG AG AG
7270 TA * 11 20/22 TA TA TA TA TA AA TG TA TA TA TA
7675 AT * 10 19/20 AT AT AT GT AT AT AT AT AT AT
48416 GT * 11 21/22 GT GT GT GT AT GT GT GT GT GT GT
53213 TG * 11 21/22 TG TG TG TG TG TG TG TG TG AG TG
55958 AT * 10 18/20 AT AC AT AT AT AT GT AT AT AT
80705 CT * 10 18/20 CT CT CT CT CA CT CT CT CT CC
92496 TC * 10 19/20 TC TC TC TC TC TC TC TC TC TG
98948 TA * 10 18/20 TA CA GA TA TA TA TA TA TA TA
103647 CA * 12 22/24 CA GA CA CA CA TA CA CA CA CA CA CA
131329 AC * 10 19/20 AC AC AC AC AC AC AC AC AC AA
140278 AT * 11 20/22 AT TT AT AT AT AT AT AT AT GT AT
141647 CT * 16 29/32 CT CT CT CA CT CT CT CT CT CT CT CT CT AT CT GT
189196 TA * 10 18/20 TA TA TA TA TT TA TA TA TA TG
202138 AG * 10 18/20 AG AG TA AG AG AG AG AG AG AG
203011 TG * 12 22/24 TG TG TG TG TG AG TG TG TG TG TT TG
284028 AT * 10 18/20 AT AT AT AT AT AT AA AT AC AT
291883 AT * 11 20/22 AT AT AC AT AT AT AT AC AT AT AT
295985 TG * 16 30/32 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG GA
-----------------------------------------------------------------------------------------
Total sequence length......................... 304383
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 3 2 0 1 1 2 1 1 1 0 0
15 to 19 0 0 0 0 0 0 1 0 0 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 3 2 0 1 1 3 1 1 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 3 TA = 8
2 AG + 0 GA + 2 CT + 1 TC = 5
1 GT + 3 TG + 1 CA + 1 AC = 6
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295742|gb|AE003578.1|AE003578 Drosophila melanogaster genomic scaffold 142000013386046 section 4 of 16, complete sequence
Position Repeat Coverage Repeat
348 GT * 11 20/22 GT GT GT GT GT GT GT GT GG GC GT
1987 AT * 10 18/20 AT AT AT AC AT AT AT GT AT AT
6927 TA * 10 18/20 TA TA TA TA TA TA TA AA TA AA
9153 GT * 11 20/22 GT GT GC GA GT GT GT GT GT GT GT
15040 GA * 11 20/22 GA GA AA GA GA GA CA GA GA GA GA
23654 CA * 17 31/34 CA CG CA CA CA CA CA CA CA CA CA CG CA CA CA CA CT
44811 TG * 17 31/34 TG TA TG TA TG TG TG TG TG TG TG TG TG TG TG TG GG
58517 GT * 16 29/32 GT GT GT GT GT GT GT GT GT GT GT GT GT GC GG TT
65963 TG * 10 18/20 TG CG TG CG TG TG TG TG TG TG
89114 CA * 10 19/20 CA CA CA CA CA CA CA TA CA CA
90942 TA * 20 36/40 TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TG TA TA TG TG
93185 CA * 16 29/32 CA CA CA CA CA CA CA CA CA CA CA CA CT TA CA AA
99745 TA * 13 24/26 TA TA GA AA TA TA TA TA TA TA TA TA TA
105975 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GT GA GT GG
115661 AT * 10 18/20 AT AT AT GT TT AT AT AT AT AT
118407 TG * 15 28/30 TG TG TG TG TG TG TG TG TG CG TG TG TG GG TG
122503 AC * 18 34/36 AC AC GC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AA
128915 CA * 12 22/24 CA CA CA CT CA CA CA CA CG CA CA CA
133519 CA * 16 30/32 CA CA CA CA CA CA CA CA CA CA CA CA CA CG AA CA
134347 CA * 12 22/24 CA CA CA CA CA CA CA CA CA AA TA CA
144255 GT * 17 31/34 GT TT GT GT GT GT GT GT GT GT GT GT GT GT GT GC GA
148503 AT * 16 30/32 AT AT AC AT GT AT AT AT AT AT AT AT AT AT AT AT
153579 AC * 11 20/22 AC AC AC AC AC AC CC AC AC AC AT
155135 TC * 11 20/22 TC TC TC TC TC TC TC TC TC TA TA
164064 AT * 10 18/20 AT AT AT AT AT GT AC AT AT AT
166903 TA * 11 20/22 TA GA TA TA TT TA TA TA TA TA TA
203862 AT * 12 22/24 AT AT AT AT AT AT AT AT AT AT AT GG
254307 AG * 17 31/34 AG AG AG AG CG AG AG AG AG AG AG AG AG AG GG GG AG
265265 AC * 10 19/20 AC AC AC AC AC AC AC AC AC AG
267642 AC * 11 20/22 AC AA AC AC AC AC AG AC AC AC AC
272192 CA * 11 20/22 CA CT CA CA CA CA CA CA CA CA CT
274774 AT * 11 21/22 AT AT AT AT TT AT AT AT AT AT AT
275513 TA * 16 29/32 TA TA TA TA TA TA TA TA TG TG TA TA TA TA TG TA
277921 TC * 10 18/20 TC TC TC TC TT TC TC TC TC TA
286232 CA * 12 23/24 CA AA CA CA CA CA CA CA CA CA CA CA
286267 TA * 11 20/22 TA TA TA TA TA TA TA TA TA TC CA
305143 AT * 18 33/36 AT AT TT AT AT AT AT AT AT AT AT AT AT AT GT AT TT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 307748
Total number of repeats detected.............. 37
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 4 0 1 3 5 1 3 2 0 0 0
15 to 19 2 1 1 0 1 3 2 2 0 0 0 0
20 to 24 0 1 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 7 6 1 1 4 8 3 5 2 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
7 AT + 6 TA = 13
1 AG + 1 GA + 0 CT + 2 TC = 4
5 GT + 3 TG + 8 CA + 4 AC = 20
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295725|gb|AE003577.1|AE003577 Drosophila melanogaster genomic scaffold 142000013386046 section 3 of 16, complete sequence
Position Repeat Coverage Repeat
1271 GT * 11 21/22 GT GT GT GT GT GT GT GT GT GT GA
9178 TG * 14 26/28 TG CG AG TG TG TG TG TG TG TG TG TG TG TG
10059 AG * 18 33/36 AG AG AC AG AG AG AG AG AG AG AG AG AC AG AG AG AG GG
18007 AC * 10 18/20 AC AC AC AT AC AC AC AC GC AC
18720 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TG TG TG AG TG CC
28356 CA * 13 24/26 CA CA CA AA CA CA CG CA CA CA CA CA CA
28595 GA * 12 22/24 GA GA GA GA GA GA GA GC GA GA GA GC
29850 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CA AG
31090 TG * 13 24/26 TG TG TG TG TG TG TG TG TG GG TG TG AG
34649 CA * 11 20/22 CA CA CA CA CA CA CA CA CT TA CA
34808 TG * 11 20/22 TG TG TG TT TC TG TG TG TG TG TG
36909 TG * 10 19/20 TG TG TG TG TG TG TG TG TT TG
58262 AC * 15 27/30 AC AC TT AC AC AC AC AC AC AC AC AC AC AC TC
67121 CA * 16 29/32 CA CA CA CA CG CA CA CA CA CA CA CA TA CA CA CG
68014 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA CT CG
71325 AT * 12 22/24 AT AG GT AT AT AT AT AT AT AT AT AT
74148 TG * 12 22/24 TG TG CG TG TG TG TG TG TG TG TG CG
78384 CA * 10 18/20 CA CA CA CA CA TA CA CA AA CA
90346 GT * 15 27/30 GT GC GT CT GT GT GT GT GT GT GT GT GT GT GC
113955 TG * 15 27/30 TG TG TG TG TG TG TG TG TG GG TG TG CG TG GG
114227 TC * 12 23/24 TC TC TC TC TC TC TC TC TC TC TC TT
127290 CA * 18 34/36 CA CA CA CA CA CA CA CA CA CA CA CA TA CA CA CA TA CA
142644 CA * 10 18/20 CA CT CA CA CA CA CA CA CT CA
142708 AC * 11 20/22 AC AC AC AC AC CC AC AC AC AC TC
144263 TG * 11 20/22 TG TG TT TA TG TG TG TG TG TG TG
148744 GT * 12 22/24 GT GT GT GG GT GT AT GT GT GT GT GT
149162 AC * 11 20/22 AC AC AC AC AC AC AC AC GC AT AC
155228 AC * 10 18/20 AC AC AC AC AC AC AC AC AC CG
159253 AT * 10 18/20 AT AT AT AT AT AT AT AT TA AT
166329 TG * 11 20/22 TG TG TG TG TG TG TG TG TT TA TG
166354 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TA AG TG TG
174650 GT * 11 21/22 GT GT GT GT GT GT GT GT GT GT GG
177471 AT * 10 18/20 AT AT AC AT AT AT AT AT AA AT
201628 CA * 20 36/40 CA CA CA CA GA CA CA CA CA CA CA CA CA CA CA CA CA CA AC GA
202449 AC * 10 18/20 AC AC AC AC AC AC AA AC AC AA
217303 CT * 11 21/22 CT CT CT CT TT CT CT CT CT CT CT
218224 CA * 10 18/20 CA TA CA CT CA CA CA CA CA CA
221700 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG TG GC
226107 CA * 10 19/20 CA CA CA CA CA CA CC CA CA CA
230772 CA * 10 18/20 CA CA CA CA CA CG CA CG CA CA
248489 CA * 42 76/84 CA CT CA CA CA CA CA CA CA CG CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CT CC GC CG CC
-----------------------------------------------------------------------------------------
Total sequence length......................... 267576
Total number of repeats detected.............. 41
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 0 0 1 5 9 9 3 1 1 0 0
15 to 19 0 0 1 0 1 2 2 1 0 0 0 0
20 to 24 0 0 0 0 0 1 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 1 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 0 1 1 6 13 11 4 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 0 TA = 3
1 AG + 1 GA + 1 CT + 1 TC = 4
4 GT + 11 TG + 13 CA + 6 AC = 34
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295692|gb|AE003576.1|AE003576 Drosophila melanogaster genomic scaffold 142000013386046 section 2 of 16, complete sequence
Position Repeat Coverage Repeat
13692 TG * 11 20/22 TG CG CG TG TG TG TG TG TG TG TG
19655 GT * 10 18/20 GT GT GT GT GT GT GT GT CT TT
25695 AT * 12 23/24 AT AT AT AT AT AT AT AT AT AT AT AG
137575 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AC AA AT
175605 TG * 15 27/30 TG TG TG TG TC TG TG TG TG TG TG TG TG TC TT
180171 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CT CG
182531 TG * 12 23/24 TG TT TG TG TG TG TG TG TG TG TG TG
183834 TA * 11 20/22 TA TA TT TC TA TA TA TA TA TA TA
184357 AT * 16 30/32 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GC
185938 TG * 10 18/20 TG TC TG TG TG TG TG AG TG TG
191177 TG * 11 21/22 TG TG TG TG TG TG TG TG TG TG AG
192484 GT * 12 22/24 GT GT GT GT GG GT GG GT GT GT GT GT
195378 TG * 10 18/20 TG TG TG TG TG TG TG CT TG TG
195663 CA * 10 18/20 CA TA CA CA CA CA CA CA AA CA
196083 TG * 10 18/20 TG TC TG TG TG TG TG TG TG TA
198858 TG * 10 18/20 TG TG TG TG TG TG TG TG TG CT
202151 AC * 10 18/20 AC AC AC CC AC AC AC AC CC AC
240930 AG * 11 20/22 AG AG AG AG AG AG AG AG AG AA AA
287508 CA * 10 18/20 CA CG CA CA CA CA CA CA CA CT
289050 TG * 22 40/44 TG CC TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG AC
299172 AT * 10 18/20 AT AT AT AC AA AT AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 304634
Total number of repeats detected.............. 21
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 1 1 0 2 3 7 2 0 0 0 0
15 to 19 1 0 0 0 0 0 1 0 0 0 0 0
20 to 24 0 0 0 0 0 0 1 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 1 1 0 2 3 9 2 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 1 TA = 4
1 AG + 0 GA + 0 CT + 0 TC = 1
2 GT + 9 TG + 3 CA + 2 AC = 16
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295650|gb|AE003575.1|AE003575 Drosophila melanogaster genomic scaffold 142000013386046 section 1 of 16, complete sequence
Position Repeat Coverage Repeat
10643 AT * 13 24/26 AT CT AT AT AT AT TT AT AT AT AT AT AT
20626 TA * 10 18/20 TA TA TA TA TA TA TA TA TT TG
25784 CA * 14 26/28 CA CA CA CA CA CA CA CA CA CA CA CA TG CA
32442 GT * 11 20/22 GT AT GT GT GT GT GT GT TT GT GT
49092 TA * 11 20/22 TA TA TG TA TA TA TA TA TG TA TA
50676 TG * 10 18/20 TG TG TG TG TG TG CG TG TG AG
50905 GT * 12 22/24 GT GT GT AT GT GT GT GT GT GT GA GT
56005 AC * 10 19/20 AC AC AC AC AC AC AT AC AC AC
57818 TA * 10 19/20 TA TA TA TA TA TA TA TA TA TN
58030 CT * 15 27/30 CT CT CT CT CT CT CT CT CT CT CT GT AT CT TT
60183 AC * 15 27/30 AC AG AC AC AC AC AC AA AC AC AC AC AC AC CC
62021 AT * 15 27/30 AT AT AT AT AT GT AT AT AT AT TT AT AT AT AA
63858 AC * 13 24/26 AC AC AT GC AC AC AC AC AC AC AC AC AC
69555 GT * 10 18/20 GT GT GT GT GT GT GT GT AT TT
69600 CA * 13 25/26 CA CA CA CA CA CA CA CA CA CA CA CA CG
69933 TC * 13 24/26 TC TC AC TC TC TC TC TC TC TC TC TT TC
70100 TG * 12 23/24 TG AG TG TG TG TG TG TG TG TG TG TG
71989 TG * 10 18/20 TG TG TG TG TG TG TG TG AT TG
76420 CA * 10 18/20 CA CA CA CA CA CA CG CA CA CT
77811 TG * 10 18/20 TG TG TG TG TG TG TG TG GA TG
81639 AT * 10 18/20 AT AC AT AT AT AT AC AT AT AT
84983 TG * 18 33/36 TG TG TG TG TG TG TG TG TG TC TG TG TG TG TC TG TA TG
85295 CA * 23 43/46 CA CA CA CA CA AA CA CA CA CA GA CA CA CA CA TA CA CA CA CA CA CA CA
99696 CA * 11 20/22 CA CA CA CA CA CA CT CA TA CA CA
116518 AC * 12 22/24 AC AC TC AC GC AC AC AC AC AC AC AC
118050 TC * 11 20/22 TC AC TC TC TC TC TG TC TC TC TC
126751 AC * 13 24/26 AC AT AT AC AC AC AC AC AC AC AC AC AC
139922 AT * 12 22/24 AT AT AT AT AC AT AT AT GT AT AT AT
148055 GT * 15 27/30 GT GT GT GT GT GT GT GT GT GT GT GT GT AG AT
148357 TC * 16 29/32 TC AC TC TC TC TC TC TC TC TC TC TC TC TT TC TG
150360 AT * 10 18/20 AT AT GG AT AT AT AT AT AT AT
150552 GT * 12 22/24 GT GT GT GT GT GT GT GA GT GT GT GG
171238 AG * 12 22/24 AG AG AG AG TG AG AG AG AG AG AG GG
171700 CA * 10 18/20 CA CA CA CT CA CA CA CA CA CT
173408 CA * 13 24/26 CA CA CT CA CA CA CA CA CA CA CG CA CA
174138 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG CG TT
176273 TC * 12 22/24 TC TC CC TC TC TC TC TC TC TC TC AC
181159 TG * 11 20/22 TG TG TC TG TA TG TG TG TG TG TG
181372 GT * 12 22/24 GT GT GT GA GT GA GT GT GT GT GT GT
182144 CA * 18 33/36 CA CC CA CA CA CA CA CA CA CA CA CA CA CA CA GA TA CA
189512 GT * 11 21/22 GT GT GT GT GT GT GT GT GT TT GT
201087 CA * 20 36/40 CA CA CA CA CA CA CA CA CA CA CA CA CA CG CA CG CA CA GA GA
209202 TG * 10 19/20 TG TG TG TG TT TG TG TG TG TG
210179 GA * 12 22/24 GA TA GA GA GA GA GA GA GA GA GG GA
215282 GT * 11 20/22 GT GA GT GA GT GT GT GT GT GT GT
219562 AT * 10 18/20 AT AT AC AT AT AC AT AT AT AT
228445 CA * 10 18/20 CA CA CA CA CA CA CA CA CC CC
239642 GT * 10 18/20 GT GT TT GT GT GT GT GT GT GA
317517 AG * 12 22/24 AG AG AG AG AG AG AG AG AG AG AG TT
325896 AT * 12 22/24 AT AG AT AT AT AT AT AC AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 327242
Total number of repeats detected.............. 50
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 6 3 2 1 4 7 7 8 3 0 0 0
15 to 19 1 0 0 0 1 1 1 1 1 1 0 0
20 to 24 0 0 0 0 0 2 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 7 3 2 1 5 10 8 9 4 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
7 AT + 3 TA = 10
2 AG + 1 GA + 1 CT + 4 TC = 8
9 GT + 8 TG + 10 CA + 5 AC = 32
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7316108|gb|AE002690.1|AE002690 Drosophila melanogaster genomic scaffold 142000013386055, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298777|gb|AE003670.1|AE003670 Drosophila melanogaster genomic scaffold 142000013386055 section 63 of 63, complete sequence
Position Repeat Coverage Repeat
25524 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CA AT
44443 AT * 10 18/20 AT AC AC AT AT AT AT AT AT AT
64010 CT * 10 18/20 CT CT CT CT CT CT CT CT CT TA
71030 TC * 10 19/20 TC TC TC TC TC TC TC TC TC TT
95327 TA * 13 24/26 TA TA TA TA TA TA TA TA TA TA TA TA AT
110155 AT * 15 27/30 AT AT AT AT AT AT AT AT AT AT AT AT AT AA TA
110185 TA * 10 18/20 TA TA TA TA TA TA TA TA TA AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 117404
Total number of repeats detected.............. 7
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 2 0 0 0 1 0 0 1 1 0 0
15 to 19 1 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 2 0 0 0 1 0 0 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 2 TA = 4
0 AG + 0 GA + 1 CT + 1 TC = 2
0 GT + 0 TG + 1 CA + 0 AC = 1
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298740|gb|AE003669.1|AE003669 Drosophila melanogaster genomic scaffold 142000013386055 section 62 of 63, complete sequence
Position Repeat Coverage Repeat
559 AT * 11 20/22 AT AT AT AT AT AT AT AT AT TT TT
1490 CA * 15 28/30 CA CA CA CA CA CA CA CA CA CT CG CA CA CA CA
40298 AT * 11 20/22 AT AT TC AT AT AT AT AT AT AT AT
52163 TA * 15 27/30 TA TA TA TA TA TA TA TA TC CA TA TA TA TA TG
61797 TA * 10 18/20 TA AA TA TA TA TA TA TA TA GA
79604 AT * 27 49/54 AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC GT TC
95261 TA * 15 28/30 TA TA TA TA TA CA TA TA TA TA TA TA TA TA TT
98405 AT * 11 20/22 AT AT AG AT AC AT AT AT AT AT AT
110874 CT * 17 31/34 CT CT CT CT CT CT CT CT CT CT CT CT GT CT CT CT GA
151936 TA * 13 24/26 TA TA TA TA TA TA TA TA TA TA TT AA TA
186920 AT * 13 24/26 AT AC AT AT AT GT AT AT AT AT AT AT AT
233503 AT * 17 32/34 AT AT AA AT AA AT AT AT AT AT AT AT AT AT AT AT AT
249064 AT * 13 24/26 AT AT AT AT AT AT AT AT GT AT GT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 272526
Total number of repeats detected.............. 13
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 2 0 0 0 0 0 0 0 0 0 0
15 to 19 1 2 0 0 0 1 0 0 0 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 1 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 7 4 0 0 0 1 0 0 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
7 AT + 4 TA = 11
0 AG + 0 GA + 1 CT + 0 TC = 1
0 GT + 0 TG + 1 CA + 0 AC = 1
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298706|gb|AE003668.1|AE003668 Drosophila melanogaster genomic scaffold 142000013386055 section 61 of 63, complete sequence
Position Repeat Coverage Repeat
15796 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CA AC
15943 AT * 11 20/22 AT AT AT AT CT AT AT CT AT AT AT
31125 GA * 14 26/28 GA AA AA GA GA GA GA GA GA GA GA GA GA GA
41276 TA * 13 24/26 TA TA TA TG TA TA TG TA TA TA TA TA TA
60644 AC * 10 18/20 AC AC AC AC CC AC AC AC CC AC
65258 CT * 11 20/22 CT CT CT CT CT CT CT CT CG CT CA
93196 TG * 10 18/20 TG TA TG TG TG TG TG TG TG TA
170947 AT * 10 19/20 AT TT AT AT AT AT AT AT AT AT
197439 GT * 10 18/20 GT GT GT GT GT GC CT GT GT GT
198248 CA * 17 31/34 CA CA CA CA CA GA TA CA CA CA CA CA CA CA CT CA CA
199338 CA * 16 30/32 CA CA CA CA CA CA CA CA CA CA CA CA CA CG CA GA
202033 CT * 10 18/20 CT GT TT CT CT CT CT CT CT CT
224907 CA * 11 20/22 CA CA CA CG CA GA CA CA CA CA CA
227877 TG * 23 42/46 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG CG GG GT
239546 TG * 14 26/28 TG GG TG TG TG TG TG TG TG TG TG CG TG TG
239830 CA * 12 22/24 CA GA CA AA CA CA CA CA CA CA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 267300
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 1 0 1 1 3 2 1 0 2 0 0
15 to 19 0 0 0 0 0 2 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 1 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 1 0 1 1 5 3 1 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 1 TA = 3
0 AG + 1 GA + 2 CT + 0 TC = 3
1 GT + 3 TG + 5 CA + 1 AC = 10
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298684|gb|AE003667.1|AE003667 Drosophila melanogaster genomic scaffold 142000013386055 section 60 of 63, complete sequence
Position Repeat Coverage Repeat
17660 GT * 12 22/24 GT GT GT GT GT GT GT GA GT GT GT AT
26498 CA * 11 20/22 CA CA CT CA CA CA CA CA TA CA CA
27819 AT * 10 18/20 AT AT AG AT AT AG AT AT AT AT
28076 GT * 17 31/34 GT GT GT GT GT GT GT GA GT GT GT GT GG GT GT GT GC
46579 CA * 12 22/24 CA CA CA CA CA CG CA CA CA TA CA CA
47298 CA * 10 19/20 CA CA CA CA CA CG CA CA CA CA
54207 CA * 15 28/30 CA GA CA CA CA CC CA CA CA CA CA CA CA CA CA
63708 TG * 12 22/24 TG AG TG TG GG TG TG TG TG TG TG TG
66842 GT * 12 23/24 GT GT GT GT GT GT GT GT GT GT GT TT
67999 TG * 11 20/22 TG TC GG TG TG TG TG TG TG TG TG
68771 TG * 13 25/26 TG TG TG TG AG TG TG TG TG TG TG TG TG
78726 GT * 21 38/42 GT TT GT GT TT GT GT GT GT GT GT GT GT GT GT GT GT GA GT GA GT
79451 CT * 10 18/20 CT CT CT CT CT CT CT CT CT GC
88188 TA * 20 36/40 TA TA TA TG TA TA TA TA TA TA TA TA TA CA TA TA TA TG TA TT
93807 CT * 10 18/20 CT CT CT CT CT CT CT CT CT TA
100827 TC * 10 19/20 TC TC TC TC TC TC TC TC TC TT
104850 CA * 15 27/30 CA CA CA CA CA CA CA CA CA CA CA TA CA CA TG
110995 TA * 11 20/22 TA TA TA CA TA TA TA CA TA TA TA
124065 CA * 11 20/22 CA CA CA CC CA CA CA CA CA CA CT
127663 AC * 11 20/22 AC AC AC AC AC AC AC AC TC AC CC
129356 TA * 16 29/32 TA TA TA TA TA TA TA TA TA TA TA TA TC TG GA TA
133216 CT * 10 18/20 CT CT CT CT CT CT CT GT CT TT
143237 CA * 10 18/20 CA CT CA CA CT CA CA CA CA CA
155832 AG * 18 33/36 AG AG AG AG TG AG AG AG AG AG AG AG AG AG TG AG AG AT
202691 AT * 10 18/20 AT AT AT AT AT AA AT AT AT AG
222279 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA CA AT
223214 AG * 15 28/30 AG AA AG TG AG AG AG AG AG AG AG AG AG AG AG
228244 AT * 13 24/26 AT AT AT AT AT AT AT AT AT AA AT AG AT
231064 TA * 10 18/20 TA TA TA CA TA TA CA TA TA TA
239011 TA * 17 31/34 TA TA TA GA TA GA TA TA TA TA TA TA TA TA AA TA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 263704
Total number of repeats detected.............. 30
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 2 0 0 1 6 3 2 1 3 0 0
15 to 19 0 2 2 0 0 2 0 1 0 0 0 0
20 to 24 0 1 0 0 0 0 0 1 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 5 2 0 1 8 3 4 1 3 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 5 TA = 8
2 AG + 0 GA + 3 CT + 1 TC = 6
4 GT + 3 TG + 8 CA + 1 AC = 16
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298667|gb|AE003666.1|AE003666 Drosophila melanogaster genomic scaffold 142000013386055 section 59 of 63, complete sequence
Position Repeat Coverage Repeat
66495 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CT AA CA
77443 AG * 10 18/20 AG AG AG AG AG AG AG AG AG CT
85101 AG * 10 18/20 AG AG AG AG AG AG AG AG AG CT
104709 TA * 15 27/30 TA TA TA TA TA CA TA TA TA TA TG TA TA TA GA
106167 TA * 11 20/22 TA TA TA TA TA TA TA TA TA CG TA
108437 TA * 12 22/24 TA TA CA GA TA TA TA TA TA TA TA TA
182477 AT * 27 50/54 AT AC AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AA
204897 GT * 15 27/30 GT GT GT GT GA GT GA GT GT GT GT GT GT GT GG
206155 AT * 10 18/20 AT AG AT AT AT AT AT AT AT TT
213009 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TG CA
219561 AT * 11 21/22 AT AT AC AT AT AT AT AT AT AT AT
220892 AC * 16 29/32 AC AC AC AC AC AC AC AC AC AC AC AC AT AT AC AT
220960 AT * 10 19/20 AT AT AT AT AT AT AT AT AT AC
221489 AC * 18 33/36 AC AC AC AC AC AC AC AC AC AC AC CC AT AC AC AC TC AC
224128 TG * 10 18/20 TG TG TG TG TG CG TA TG TG TG
234363 GT * 14 26/28 GT GT GT GT GT GT GT GT GT GT GT GT AT GG
235807 AC * 10 18/20 AC AC AC CC AC AC AC AC AC AT
243901 CA * 12 22/24 CA GA CA CA CA CA CA GA CA CA CA CA
244695 GT * 10 19/20 GT GT GT GT GT GT GT GT GT CT
244959 CA * 10 18/20 CA CC CT CA CA CA CA CA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 247952
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 2 2 0 1 3 2 2 0 0 0 0
15 to 19 0 1 0 0 2 0 0 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 1 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 3 2 0 3 3 2 3 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 3 TA = 7
2 AG + 0 GA + 0 CT + 0 TC = 2
3 GT + 2 TG + 3 CA + 3 AC = 11
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298648|gb|AE003665.1|AE003665 Drosophila melanogaster genomic scaffold 142000013386055 section 58 of 63, complete sequence
Position Repeat Coverage Repeat
5244 TA * 10 18/20 TA TA CA TA TA TA TA TA TG TA
57383 TA * 13 25/26 TA TA TA TA TA TA TA TA TA TA TA TT TA
58963 AC * 15 27/30 AC AC AC AC AC AC AC AC AC AC AC AC AC AT GT
85772 AC * 13 25/26 AC AC AC AC AC AC AC GC AC AC AC AC AC
95749 CA * 13 24/26 CA CC CA CA CA CA CA CA CA CA CA CA CT
99309 TG * 12 22/24 TG CG TG CG TG TG TG TG TG TG TG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 205045
Total number of repeats detected.............. 6
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 2 0 0 1 1 1 0 0 0 0 0
15 to 19 0 0 0 0 1 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 2 0 0 2 1 1 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 2 TA = 2
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 1 TG + 1 CA + 2 AC = 4
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298621|gb|AE003664.1|AE003664 Drosophila melanogaster genomic scaffold 142000013386055 section 57 of 63, complete sequence
Position Repeat Coverage Repeat
28985 AT * 12 22/24 AT AT AT AT AT AG AT AT AT AT AT GT
55016 AT * 10 18/20 AT AT AT AT AT AT GT AC AT AT
61683 GT * 10 18/20 GT GT GT GT GT GT TC GT GT GT
64590 GT * 15 28/30 GT GT GT GT GT GT GT AT GT GT GT GT GT GT GC
81253 AT * 10 18/20 AT AT AA AT AT AA AT AT AT AT
88767 CT * 14 26/28 CT CC CT CT CT CT CT CT CT CT CT CT CT CA
95024 AG * 10 18/20 AG AG AG AG AG AG AG AG AG GA
103695 GT * 16 29/32 GT GT CT GA GT GT GT GT GT GT GT GT GT GT GG GT
109771 TG * 12 22/24 TG TG TG CG TG TG TG TG TT TG TG TG
109842 TG * 13 25/26 TG TG TG TG TG TG TG TG TG TG TG TT TG
113947 CA * 19 35/38 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CG CA CA TG CA
131501 GT * 13 24/26 GT GT GT GT GT GT GT GT TT CT GT GT GT
173647 AT * 15 27/30 AT AT AT AT AT AA AT AT AC AT AT AT AT AT AG
180492 TA * 11 20/22 TA TA TA TA TA TA TT GA TA TA TA
199389 TA * 12 22/24 TA TA TA AA TA TA TA TA TA TA TA AA
203790 TA * 10 18/20 TA TA TA TA TG TA TA TA TG TA
236647 TA * 11 21/22 TA AA TA TA TA TA TA TA TA TA TA
253923 CT * 13 24/26 CT CT CT CT CT CT CT CT CT CT CT CT GC
257803 TA * 10 18/20 TA TA TA TA CA TA TA TA TA TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 266340
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 5 1 0 0 0 2 2 0 2 0 0
15 to 19 1 0 0 0 0 1 0 2 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 5 1 0 0 1 2 4 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 5 TA = 9
1 AG + 0 GA + 2 CT + 0 TC = 3
4 GT + 2 TG + 1 CA + 0 AC = 7
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298582|gb|AE003663.1|AE003663 Drosophila melanogaster genomic scaffold 142000013386055 section 56 of 63, complete sequence
Position Repeat Coverage Repeat
625 TA * 11 20/22 TA TA TA TG TA TA TA TA TT TA TA
22754 TG * 11 20/22 TG GG TG TG TG TG TG TG GG TG TG
25568 AG * 11 20/22 AG TG CG AG AG AG AG AG AG AG AG
32614 CT * 11 20/22 CT CA CT CG CT CT CT CT CT CT CT
38324 TG * 10 18/20 TG TG TC TG TG TG TG CG TG TG
38423 GA * 15 27/30 GA GA AA GA GA GA GA GA GA GA GA GA GA GC AA
61173 TA * 10 18/20 TA TA TA TA TT TA TA TA TA AA
101338 AT * 10 18/20 AT AT AT AT AC AT AC AT AT AT
108085 CA * 15 27/30 CA CA CA CA CA CA CA CA CA CA CA CA CA CC AC
109847 TA * 12 22/24 TA TA TA TA TA TA TA CA TA TA TA TT
133857 CA * 11 21/22 CA CA CA CA CA CA CA CA CA CG CA
146046 TG * 17 31/34 TG TG TG TG TG TG TG TT TG TG TG TG TG TT TG AG TG
152786 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG CG AG
153012 TG * 12 22/24 TG TG TG TG TG GT TG TG TG TG TG TG
154881 GT * 10 18/20 GT GG GT GT GT GT GT GG GT GT
161010 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA AA GA
161103 GT * 11 20/22 GT GT GT AT GT GT GT GT GT GT GA
161332 GT * 10 18/20 GT GT GT GT GT GT GT GT GT TG
163686 AC * 12 22/24 AC GA AC AC AC AC AC AC AC AC AC AC
167234 TA * 11 20/22 TA GA TA TA TA TA TA TA TA TA GA
167638 TG * 11 20/22 TG TC GG TG TG TG TG TG TG TG TG
168099 AT * 12 22/24 AT AC AT AC AT AT AT AT AT AT AT AT
178229 AT * 18 33/36 AT AT AT AT AT AT AT AT CT AT AT AT AT AT AT AT GT AG
183367 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CC TA CA
183732 GT * 10 18/20 GT GT GT GT GT GT GT GG GT GG
185223 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GT GT GA GC
185925 CA * 11 20/22 CA CA CA CC CA CA CA CC CA CA CA
186640 TG * 16 30/32 TG CG TG TG TG TG TG TG TG TG TG TG TG TG TG TT
188611 CA * 13 24/26 CA CC CA CA CA CA CA CA CA CA CA CA GA
193586 TA * 13 24/26 TA TA TA TA TA CA TA CA TA TA TA TA TA
195574 TG * 10 18/20 TG GG TG TG TC TG TG TG TG TG
199461 AC * 12 22/24 AC AC AC AC AC AC AC AC AG AC AC AT
206630 TG * 12 23/24 TG TG TC TG TG TG TG TG TG TG TG TG
209197 AT * 11 20/22 AT AT AA AT AT AC AT AT AT AT AT
210610 TG * 12 22/24 TG TG TG TG TG TG TG TC TA TG TG TG
243622 TA * 12 22/24 TA TA TA TA TA TA TA TA AA TA TA TG
246744 AT * 16 29/32 AT AT AG AT AT AT AT AT AT AT AT AT GT AT AT GT
252046 GT * 17 31/34 GT GT GT GT GT GT GT GT GC GC GT GT GT GT GA GT GT
259407 GT * 13 24/26 GT GT GT TT GT GT GT GT TT GT GT GT GT
265484 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG TG GT
266936 CA * 12 23/24 CA CC CA CA CA CA CA CA CA CA CA CA
267057 CA * 10 18/20 CA CA CA CA CA CA CA CA CA GT
280576 CA * 10 18/20 CA CA CA CA CG CA CA CA CC CA
287701 AT * 15 27/30 AT AT CT AT AT AT AT AA AT AT AT AT AT AT TT
291257 TG * 10 18/20 TG TG TG TG TG TG TG TG CG GG
-----------------------------------------------------------------------------------------
Total sequence length......................... 299476
Total number of repeats detected.............. 45
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 6 1 0 2 8 10 6 0 1 0 0
15 to 19 3 0 0 1 0 1 2 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 6 6 1 1 2 9 12 7 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
6 AT + 6 TA = 12
1 AG + 1 GA + 1 CT + 0 TC = 3
7 GT + 12 TG + 9 CA + 2 AC = 30
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298553|gb|AE003662.1|AE003662 Drosophila melanogaster genomic scaffold 142000013386055 section 55 of 63, complete sequence
Position Repeat Coverage Repeat
50 AT * 13 24/26 AT AT AT AT AT AT AT AT AT AT AT TT AA
21675 TG * 11 20/22 TG TG TG CA TG TG TG TG TG TG TG
37813 CA * 11 20/22 CA AA AA CA CA CA CA CA CA CA CA
46071 AT * 11 21/22 AT GT AT AT AT AT AT AT AT AT AT
48595 CA * 10 19/20 CA CA CA CA CA CA CC CA CA CA
55389 AC * 12 22/24 AC AC AC AC AT AC AC TC AC AC AC AC
64694 AC * 17 31/34 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC GT GC
65008 CA * 11 20/22 CA CT CA CA CA CA CA CA CA CT CA
67798 AT * 10 18/20 AT AT TT AT AT AT AT AT AT TT
86766 AC * 10 18/20 AC AC AC AC AC AA GC AC AC AC
149006 GT * 16 29/32 GT GT GC GT GT GT GT GT GT GT GT GT GT TT AT GT
158135 TG * 10 18/20 TG GG TG TG TG TG TC TG TG TG
184122 AG * 13 24/26 AG AG CG AG AG AG AG AG AG AG AG AC AG
219814 AG * 17 31/34 AG AG AG AG AG AG AG AG AG AG AG GA AG AG AG AG TG
226657 TG * 12 22/24 TG TA TG TG TG TG TG TG TG TA TG TG
233643 TA * 16 29/32 TA TA TA CA TA CA TA TA TA TA TA TA TA TA TA TC
236092 CA * 11 20/22 CA CA CA CA GA CA CA CA CA CA CC
262843 TA * 10 18/20 TA TA TG TA TA TA TA TA TA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 263214
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 1 1 0 2 4 3 0 0 0 0 0
15 to 19 0 1 1 0 1 0 0 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 2 2 0 3 4 3 1 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 2 TA = 5
2 AG + 0 GA + 0 CT + 0 TC = 2
1 GT + 3 TG + 4 CA + 3 AC = 11
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298501|gb|AE003661.1|AE003661 Drosophila melanogaster genomic scaffold 142000013386055 section 54 of 63, complete sequence
Position Repeat Coverage Repeat
8224 AG * 12 22/24 AG AG AG AG AG AG AG AG AG AG AG CT
12059 CA * 16 29/32 CA CA CA CA CA CA CA AA CA CA CA CA CA CT CA AA
13298 GT * 18 33/36 GT GG GT GT GT GT GT GT GT GT GT GT GT GT GT GC GT TT
20258 TG * 10 18/20 TG TG TG TG TG TG TG TG TG GA
58691 AC * 10 18/20 AC AC AC AC AC AC AC AC TC GC
86355 TA * 18 33/36 TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TG TA CA
117453 GT * 12 23/24 GT GT GT GT GT GT GT GT GT GT GT GA
117686 TG * 11 20/22 TG TG TG TT TG TG TA TG TG TG TG
145008 CA * 11 21/22 CA CA CA CA CA CA CT CA CA CA CA
173994 GT * 11 21/22 GT AT GT GT GT GT GT GT GT GT GT
190464 TA * 16 29/32 TA CA TA TA TA TA TA TA GA TA TA TA TA TA TA GA
209202 AT * 12 22/24 AT AT AT AT AT AT AG AT AT AT AT AG
210845 AT * 10 18/20 AT AT AT AT AT AT AC AT AC AT
228081 GT * 14 26/28 GT GT GT GT GT GT GT GT GT GT GT GG AT GT
229015 GT * 11 20/22 GT GC GT GT GT GT GT GT GT GT CT
235512 CA * 28 51/56 CA CA CA CA CA CA CA CA CA CA CA CA CG CA CA CA CA CA CA CA CA CA CA CA CA GG AA AA
236517 GA * 13 25/26 GA GA GA GA TA GA GA GA GA GA GA GA GA
260308 AC * 10 18/20 AC AC AC AG AC AC AC AC AC TC
263851 TA * 22 40/44 TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA AA TT TA TA AA
-----------------------------------------------------------------------------------------
Total sequence length......................... 265023
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 0 1 1 2 1 2 4 0 0 0 0
15 to 19 0 2 0 0 0 1 0 1 0 0 0 0
20 to 24 0 1 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 1 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 3 1 1 2 3 2 5 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 3 TA = 5
1 AG + 1 GA + 0 CT + 0 TC = 2
5 GT + 2 TG + 3 CA + 2 AC = 12
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298465|gb|AE003660.1|AE003660 Drosophila melanogaster genomic scaffold 142000013386055 section 53 of 63, complete sequence
Position Repeat Coverage Repeat
36810 AT * 10 18/20 AT AC AT GT AT AT AT AT AT AT
57845 GT * 10 18/20 GT GT AT CT GT GT GT GT GT GT
67862 AC * 10 18/20 AC AC AC AC GC AC AC AC AC AG
71591 TA * 11 20/22 TA TA TA TA TA CA TA CA TA TA TA
77452 AT * 10 19/20 AT AT AT AT AT AT AT AT AT GT
89298 TA * 11 20/22 TA TA TA TA TA TA TA TA TA AA GA
91791 AT * 12 22/24 AT AT AT AT AT AT AT AC AT AT AT GT
93972 CA * 15 27/30 CA CA CA CA CA CA CA CA CA CA CA CA CA TG TA
99748 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT GT TA
99808 AG * 11 20/22 AG GG AG AA AG AG AG AG AG AG AG
105091 GA * 15 27/30 GA GA GA GG GA GA GA GA AA GA GA GA GA GA GT
106108 GT * 11 20/22 GT GT GT GT GT GT GT GT GT GT TG
167241 CT * 16 30/32 CT CT CT CT CT CT CC CT CT CT CT CT CT CT CT TT
168402 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA CA GT
170236 CA * 10 18/20 CA AA CA CA CG CA CA CA CA CA
175126 AG * 13 24/26 AG AG AG AG AG AG AG AG AG AG TG AA AG
188753 AC * 25 46/50 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AA AA AA AC AC AC AC AT
191364 TC * 12 22/24 TC TC TC TC TC TC TC TC TC TC TT CC
196120 AC * 12 22/24 AC GC AG AC AC AC AC AC AC AC AC AC
209026 AC * 10 18/20 AC CC AC AC AC AC TC AC AC AC
209388 AC * 13 24/26 AC AC CC AC AC AC AC AC AC AC AC AC AG
225499 CA * 17 31/34 CA CA CA CA CA CA CA CA CA CA CA CA CA CA GG CG CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 231972
Total number of repeats detected.............. 22
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 2 2 0 4 2 0 3 1 0 0 0
15 to 19 0 0 0 1 0 2 0 0 0 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 1 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 2 2 1 5 4 0 3 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 2 TA = 5
2 AG + 1 GA + 1 CT + 1 TC = 5
3 GT + 0 TG + 4 CA + 5 AC = 12
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298444|gb|AE003659.1|AE003659 Drosophila melanogaster genomic scaffold 142000013386055 section 52 of 63, complete sequence
Position Repeat Coverage Repeat
10551 TA * 12 22/24 TA TA GA TA TA TA TA TA TA TA TA TT
11982 AT * 10 18/20 AT AT AT AT AT AT AT AC AT TT
20552 CA * 10 19/20 CA CA AA CA CA CA CA CA CA CA
23845 AC * 13 24/26 AC AC AC AC AC AC AC AT AC AA AC AC AC
38916 GT * 13 25/26 GT GT GT GT GT GT GT GT GT GT GT GT GA
38952 GA * 10 18/20 GA GA AG GA GA GA GA GA GA GA
40042 CA * 10 19/20 CA CA AA CA CA CA CA CA CA CA
127446 TC * 13 24/26 TC TC TC TC TC TC TC TC TC TC TC TA TT
145756 AC * 12 22/24 AC AC AC AG AC AC GC AC AC AC AC AC
167514 AC * 17 31/34 AC AC AC AC AC AC AC AC AC AC AG AA AC AC AC TC AC
167594 GT * 12 22/24 GT GT GT GT GT GT TT GT GT GT GG GT
168762 AT * 12 22/24 AT AA AT AT AA AT AT AT AT AT AT AT
203200 AC * 10 19/20 AC AC AC AC AC AC AC AC AC AA
212155 CT * 20 37/40 CT CT CT CT CT CT CT CT CT CT CT CT CT CC CT CT TT CT CT CC
227445 GT * 10 18/20 GT GT GT TT GT GT GT GT GT TT
231665 AG * 12 23/24 AG AA AG AG AG AG AG AG AG AG AG AG
-----------------------------------------------------------------------------------------
Total sequence length......................... 260897
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 1 1 1 3 2 0 3 1 0 0 0
15 to 19 0 0 0 0 1 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 1 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 1 1 1 4 2 0 3 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 1 TA = 3
1 AG + 1 GA + 1 CT + 1 TC = 4
3 GT + 0 TG + 2 CA + 4 AC = 9
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298430|gb|AE003658.1|AE003658 Drosophila melanogaster genomic scaffold 142000013386055 section 51 of 63, complete sequence
Position Repeat Coverage Repeat
2160 AT * 10 18/20 AT AC AT AT AT GT AT AT AT AT
4364 TG * 13 24/26 TG CG TG TG TG TG TG TG TG TG CG TG TG
4565 AT * 10 18/20 AT AT AC AT AT AT AT GT AT AT
11892 TA * 10 19/20 TA TA TA TA TA TA TA TA TA TT
16563 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AT TG
32193 AC * 13 24/26 AC AC CC AC AG AC AC AC AC AC AC AC AC
34201 AT * 15 28/30 AT TC AT AT AT AT AT AT AT AT AT AT AT AT AT
48938 TG * 11 20/22 TG TA TG TG TG TG TG TG TG GG TG
86844 CA * 12 22/24 CA CA CA CA CA AA CA CA CA CA CA AA
120559 CA * 11 20/22 CA CA TA CA CG CA CA CA CA CA CA
129387 AC * 15 27/30 AC AC AC AC AC AC AT AC AC AC AA AC AC AC AA
173182 AC * 10 19/20 AC AC AC AC AC AC AC CC AC AC
206396 AC * 10 18/20 AC AC AC AC AC AC GC AC AC AG
238841 TC * 11 20/22 TC CC TT TC TC TC TC TC TC TC TC
259826 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC AT AC AA
269498 AC * 16 29/32 AC AC AC AC GC AC AC AC AC AC AC AC AC TC AC TC
-----------------------------------------------------------------------------------------
Total sequence length......................... 270233
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 1 0 0 4 2 2 0 1 0 0 0
15 to 19 1 0 0 0 2 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 1 0 0 6 2 2 0 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 1 TA = 5
0 AG + 0 GA + 0 CT + 1 TC = 1
0 GT + 2 TG + 2 CA + 6 AC = 10
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298413|gb|AE003657.1|AE003657 Drosophila melanogaster genomic scaffold 142000013386055 section 50 of 63, complete sequence
Position Repeat Coverage Repeat
13523 AT * 12 22/24 AT AT AT AA AT AT AT TT AT AT AT AT
26217 TG * 15 28/30 TG TG TG TG TG TG TG TG TG TG TG TG CG TC TG
29827 CA * 12 22/24 CA CT CA CA CA CA CA CA CA TA CA CA
44140 TG * 10 18/20 TG TG TA TG TG TG TG TG TG TA
47770 TA * 23 42/46 TA TA TA TA CA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TG TA
51056 AC * 10 18/20 AC AG AC AC AC AC AC AC TC AC
67339 AT * 10 18/20 AT AT AT AT GT AT AT AT AT AA
69609 TA * 15 27/30 TA TA TG TA TA TA TA TA TA TA TA TA TG TA AA
82201 AC * 11 20/22 AC AC AC AC AC AC AC AC TC AC AT
131048 TG * 14 26/28 TG TG TG TG TG TG TG TG TG TG TG AG TG CG
138221 TG * 28 51/56 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG AG TG TG AG TG GG GC TG
153983 GT * 12 23/24 GT GT GT GT GT GT GT GT GC GT GT GT
155250 TG * 10 18/20 TG TG TG TG TG TG TG AG AG TG
204359 TA * 15 28/30 TA TA TA TA TA TG TA TA TA TA TA TA TA TA TC
230247 CA * 10 18/20 CA CT CG CA CA CA CA CA CA CA
235921 CA * 10 18/20 CA CA CA CA CA CA CA CA CT CC
-----------------------------------------------------------------------------------------
Total sequence length......................... 256054
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 0 0 0 2 3 3 1 0 0 0 0
15 to 19 0 2 0 0 0 0 1 0 0 0 0 0
20 to 24 0 1 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 1 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 3 0 0 2 3 5 1 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 3 TA = 5
0 AG + 0 GA + 0 CT + 0 TC = 0
1 GT + 5 TG + 3 CA + 2 AC = 11
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298410|gb|AE003656.1|AE003656 Drosophila melanogaster genomic scaffold 142000013386055 section 49 of 63, complete sequence
Position Repeat Coverage Repeat
9088 TG * 10 18/20 TG TG TT TG TG TG TG TG TA TG
11420 AT * 12 22/24 AT AT AT AT AT AT GT AT AT AT AT GT
65461 AC * 10 19/20 AC AC AC AC AT AC AC AC AC AC
91203 CA * 11 20/22 CA CA CA CA CA CA CA CT CA CA AA
112204 AT * 12 22/24 AT AT AT AT AT AT AT TT AT AT AT TT
114558 AG * 10 19/20 AG AG AG AG AG AG AG AG AA AG
194482 GT * 13 24/26 GT GT GC TT GT GT GT GT GT GT GT GT GT
207516 CA * 10 18/20 CA AA CA CA GA CA CA CA CA CA
208661 TA * 10 18/20 TA CA TA TA TA TA TA TA TA TT
225889 TC * 10 18/20 TC TC TA TC TC TA TC TC TC TC
228812 AT * 15 27/30 AT AT AT AT AT AT AT AT AT AT AC AT AT AC AC
241781 AC * 12 22/24 AC GC GC AC AC AC AC AC AC AC AC AC
242273 TA * 12 22/24 TA TA TA TA TA TA TA TA TA TT TA TT
-----------------------------------------------------------------------------------------
Total sequence length......................... 251154
Total number of repeats detected.............. 13
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 2 1 0 2 2 1 1 1 0 0 0
15 to 19 1 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 2 1 0 2 2 1 1 1 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 2 TA = 5
1 AG + 0 GA + 0 CT + 1 TC = 2
1 GT + 1 TG + 2 CA + 2 AC = 6
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7298378|gb|AE003655.1|AE003655 Drosophila melanogaster genomic scaffold 142000013386055 section 48 of 63, complete sequence
Position Repeat Coverage Repeat
593 GT * 10 18/20 GT GC GT GT GT GT GT GT GT GA
11801 AT * 10 18/20 AT AT AT AT AA AT AT AT AT TT
13965 AT * 13 24/26 AT AT TT AT AT AT AT CT AT AT AT AT AT
39206 AC * 11 20/22 AC AC AC TC AC AC AC AC AC AC AT
39395 CA * 12 22/24 CA CA CA CA CA CA GA CA CA CA CA CG
43695 AT * 10 18/20 AT CT AT AT GT AT AT AT AT AT
45486 GA * 10 18/20 GA GA GG GA GA GA GA GA GC GA
46680 TG * 12 22/24 TG TG TG TT TG TG TG TG TG TG TT TG
65190 TC * 13 24/26 TC TC AC TC AC TC TC TC TC TC TC TC TC
154729 AT * 10 18/20 AT AT AC AT AT AC AT AT AT AT
158447 TG * 11 20/22 TG TG TG TG CG TG TG TG TG TG CG
173458 GT * 10 18/20 GT GT GT GT GT GT GT GA GT TT
177739 CA * 17 31/34 CA AA CA CT CA CA CA CA CA CA CA CA CA CA CA CA AA
202427 GT * 11 20/22 GT GT GT GT GC GT GT GT GT GT GA
205518 AG * 12 22/24 AG GG AG AG AG AG AG AG AG AG TG AG
207815 TA * 10 18/20 TA AA AA TA TA TA TA TA TA TA
208616 AT * 12 22/24 AT AT AT AA TT AT AT AT AT AT AT AT
232356 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TG TG TG TG AA TT
241175 GT * 11 20/22 GT GT GT AT GT GT AT GT GT GT GT
245290 TA * 11 20/22 TA TA TA TA TA TA TA TA TA TA CC
249128 CA * 16 29/32 CA CA CA AA CA CA CA CA CA CA CA CA CA CA CA TG
--