Tetra-Nucleotide Repeats in Genomic Sequences
Tetra-Nucleotide Repeats in
Drosophila melanogaster Chromosome-X Genomic Scaffolds
Genomic sequence...
gi|7289277|gb|AE002611.1|AE002611 Drosophila melanogaster genomic scaffold 142000013385548, complete sequence
Position Repeat Coverage Repeat
1952 ATAC * 5 19/20 ATAC ATAC ATAC ATAC ATAT
2422 ATAC * 5 18/20 ATAC ATAC AAAC ATAC ATAT
10917 TATG * 5 18/20 TATG TATG TATG TATT TATA
24744 TGGC * 5 18/20 TGGC TGGC TGGC TGGG TGGT
29425 TCAA * 5 18/20 TCAA TCAA ACAG TCAA TCAA
35039 TGTA * 6 22/24 TGTA TGTA TGTA TGTG TGTA TATA
51148 ATCA * 5 19/20 ATCA ATCA ATCA ATCA ATCG
55831 ACAA * 5 18/20 ACAA GCAA ACAA ACAA ACAC
60466 AGAA * 5 18/20 AGAA AGAA AGAA GGAA AGGA
63050 GCCA * 5 18/20 GCCA GGCA GCCA GGCA GCCA
67792 CAGT * 5 18/20 CAGT CAGT CGGT CTGT CAGT
72714 TTGA * 5 18/20 TTGA TTCC TTGA TTGA TTGA
100032 TGTC * 6 23/24 TGTC TGTC TGTC TGTC TGTA TGTC
100833 GGAT * 7 26/28 GGAT GGTT GGAT GGAT GGAT GGAT AGAT
123993 CAGA * 5 18/20 CAGA CACA CACA CAGA CAGA
142264 TACA * 5 19/20 TACA TACA TGCA TACA TACA
148052 GGTG * 5 18/20 GGTG TGTG GGTG TGTG GGTG
176235 TATG * 5 18/20 TATG TGTG TATG TATG TATA
188251 GGAT * 5 18/20 GGAT GGAG GGAT GGAT GGTT
201939 ACGC * 5 18/20 ACGC ACGC ACGC ACAC ACAC
215904 TATG * 5 18/20 TATG TACA TATG TATG TATG
-----------------------------------------------------------------------------
Total sequence length......................... 216949
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 21
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
ATAC-2 ATCA-1 AGAA-1 ACAA-1 ACGC-1 TATG-3 TACA-1 TTGA-1
TGTA-1 TGTC-1 TGGC-1 TCAA-1 GGAT-2 GGTG-1 GCCA-1 CAGA-1
CAGT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7316095|gb|AE002620.1|AE002620 Drosophila melanogaster genomic scaffold 142000013386037, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------
Total sequence length......................... 0
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------
Genomic sequence...
gi|7295611|gb|AE003572.1|AE003572 Drosophila melanogaster genomic scaffold 142000013386037 section 5 of 5, complete sequence
Position Repeat Coverage Repeat
11367 CATC * 10 37/40 CATC CATC CATC CATC CATC CATC CATC TATC TATC TATC
12173 TTCC * 5 18/20 TTCC TTCC TTCC CTCC TGCC
15297 ATAC * 10 37/40 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAT ATGG
15410 TACT * 5 18/20 TACT TTCT TACT TACT TTCT
16433 CAAA * 6 22/24 CAAA CAAG CAAA CAAA CAAA CAAG
31412 ACAT * 5 18/20 ACAT ACAT ATAT ACAT ATAT
32656 TACA * 5 19/20 TACA TACA TACA TACA TAGA
38975 GGAT * 5 18/20 GGAT GGAT GGAT GAAT CGAT
43470 TAAA * 6 22/24 TAAA TAAA TAAA GAAA TAAA AAAA
47813 ACGG * 5 18/20 ACGG ACGG ACGG ACGG ACAC
47833 GGAC * 5 18/20 GGAC GGAC GGAC AGAA GGAC
55988 GCGA * 7 26/28 GCGA ACGA GCGA GCGA GCGA GCGA TCGA
67070 AAAG * 5 18/20 AAAG ATAG AAAG AAAG AAAT
-----------------------------------------------------------------------------
Total sequence length......................... 79498
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 13
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAG-1 ATAC-1 ACAT-1 ACGG-1 TAAA-1 TACA-1 TACT-1 TTCC-1
GGAT-1 GGAC-1 GCGA-1 CAAA-1 CATC-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7295580|gb|AE003571.1|AE003571 Drosophila melanogaster genomic scaffold 142000013386037 section 4 of 5, complete sequence
Position Repeat Coverage Repeat
8165 GATA * 5 18/20 GATA GATA GATA GATA GAAT
78765 GGAT * 5 19/20 GGAT GGAT GGAT GGAT AGAT
87053 GTGG * 6 22/24 GTGG GTGG GTGG GCGA GTGG GTGG
94716 ACGG * 5 18/20 ACGG ACTG ACGG ACAG ACGG
101246 TATG * 5 18/20 TATG TATG TATG TACA TATG
126242 TATG * 5 19/20 TATG TATG TATG TATG CATG
138132 ATTG * 5 19/20 ATTG ATTG ATTG ATTG ATCG
138635 TTTA * 5 18/20 TTTA TTTG TTTA TCTA TTTA
163502 TTTG * 5 18/20 TTTG TTTG TTTG TTTT TTTT
165261 TACA * 5 18/20 TACA TACG TACA CACA TACA
167777 TAAA * 6 22/24 TAAA TAAA TAAA TAAA AAAA AAAA
178088 TATG * 5 19/20 TATG TATG TATG TATG TATT
249005 ATAA * 5 18/20 ATAA CTAA CTAA ATAA ATAA
249666 GGCA * 5 18/20 GGCA GCCA GGCA GCCA GGCA
276527 GTGA * 8 29/32 GTGA GTGA GTGA GTGA GTAA GTGA GTGT GTGC
280092 GTCA * 5 18/20 GTCA GTCA TTCA GCCA GTCA
285335 CTGA * 5 18/20 CTGA TTGA CTGA CCGA CTGA
287916 GCTG * 5 18/20 GCTG GCTG GCTG GCTG GCAT
294269 GACT * 5 18/20 GACT GTCT GACT GTCT GACT
295960 ATCC * 5 18/20 ATCC AACC ATCC ACCC ATCC
298425 AACA * 5 19/20 AACA AACA AACA AACA GACA
-----------------------------------------------------------------------------
Total sequence length......................... 302246
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 21
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AACA-1 ATAA-1 ATTG-1 ATCC-1 ACGG-1 TAAA-1 TATG-3 TACA-1
TTTA-1 TTTG-1 GATA-1 GACT-1 GTGA-1 GTGG-1 GTCA-1 GGAT-1
GGCA-1 GCTG-1 CTGA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7295563|gb|AE003570.1|AE003570 Drosophila melanogaster genomic scaffold 142000013386037 section 3 of 5, complete sequence
Position Repeat Coverage Repeat
7180 TGAT * 5 19/20 TGAT TGAT TGAT TGAT GGAT
13397 GTTG * 6 22/24 GTTG GTCG GTTG GTTG GGTG GTTG
15117 AGTC * 5 18/20 AGTC ATTC ACTC AGTC AGTC
61128 CGAA * 5 18/20 CGAA TGAG CGAA CGAA CGAA
92395 TCAG * 11 41/44 TCAG TCAG TCAG TCAA TCAA TCAG TCAG TCAG TCAG TCAG TCAC
94574 AAGC * 5 18/20 AAGC AAGT TAGC AAGC AAGC
112360 TTTC * 5 19/20 TTTC CTTC TTTC TTTC TTTC
115060 TGTC * 5 19/20 TGTC CGTC TGTC TGTC TGTC
116950 TGTT * 6 22/24 TGTT TGTA TGTT TGTT TGTT TTTT
121017 CATA * 5 18/20 CATA CATA TATA CATA TATA
139094 AAAT * 6 22/24 AAAT AAAT AAAT AAAT AAAT ATAA
152750 TTTG * 5 19/20 TTTG TTTG TCTG TTTG TTTG
161772 AAAT * 6 22/24 AAAT AAAT AAAT AAAT ATAT ATAT
163439 AATA * 5 19/20 AATA AATA AATA AATA AATC
189550 GGTG * 5 18/20 GGTG GATG GGTG GTTG GGTG
193058 ATTT * 5 18/20 ATTT ATTT ATTT ATTT ACTC
213115 GGTT * 5 18/20 GGTT GGGT GGTT GGGT GGTT
213135 GGGT * 5 18/20 GGGT GGTT GGGT GGTT GGGT
217937 AGCC * 6 22/24 AGCC AGCC AGTC AGTC AGCC AGCC
219037 ACGG * 8 29/32 ACGG ACGG ACGG ACGG ACGG ACGG AGCG ACGT
235290 CATA * 5 18/20 CATA TGTA CATA CATA CATA
265744 AACA * 5 18/20 AACA AACA AACA AATA GACA
265774 CAAA * 5 18/20 CAAA CAGA CAAA CATA CAAA
275621 TAAA * 5 19/20 TAAA TAAA TAAA CAAA TAAA
277441 ATTA * 5 18/20 ATTA TTTA ATTA ATTA AATA
289179 AATG * 5 18/20 AATG AATG AACG GATG AATG
-----------------------------------------------------------------------------
Total sequence length......................... 299012
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 26
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-2 AATA-1 AATG-1 AAGC-1 AACA-1 ATTA-1 ATTT-1 AGTC-1
AGCC-1 ACGG-1 TAAA-1 TTTG-1 TTTC-1 TGAT-1 TGTT-1 TGTC-1
TCAG-1 GTTG-1 GGTT-1 GGTG-1 GGGT-1 CAAA-1 CATA-2 CGAA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7295529|gb|AE003569.1|AE003569 Drosophila melanogaster genomic scaffold 142000013386037 section 2 of 5, complete sequence
Position Repeat Coverage Repeat
14746 CGGA * 5 18/20 CGGA CGGA CGGA CAGA TGGA
14768 GACG * 5 18/20 GACG GACA GACG GACT GACG
17773 TCAA * 6 22/24 TCAA TCAA TCAA TCAA CCAA TCAC
26260 TGGG * 5 18/20 TGGG TGGG TGTT TGGG TGGG
28368 AGCT * 6 23/24 AGCT AGCT AGTT AGCT AGCT AGCT
88495 ATAC * 5 18/20 ATAC ATAC ATAC ATAT GTAC
194981 AAAT * 5 18/20 AAAT AAAC ACAT AAAT AAAT
214876 AGAC * 8 29/32 AGAC AGAC AGAC AGAC AGAC AGAT AGAC GGTC
217974 ATAC * 5 18/20 ATAC ATAC ATAT ATAC ATAT
225948 TTTG * 5 19/20 TTTG TTTG TTTG TTTG GTTG
228252 CATC * 5 18/20 CATC CATC CATC CATC TAAC
245594 TACA * 6 23/24 TACA TACA TACA TACA TACA TGCA
257366 GTCC * 5 19/20 GTCC GTCC GTCC GTCT GTCC
290305 CACG * 5 18/20 CACG CACG CACA CACA CACG
-----------------------------------------------------------------------------
Total sequence length......................... 292406
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 ATAC-2 AGAC-1 AGCT-1 TACA-1 TTTG-1 TGGG-1 TCAA-1
GACG-1 GTCC-1 CATC-1 CACG-1 CGGA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7295493|gb|AE003568.1|AE003568 Drosophila melanogaster genomic scaffold 142000013386037 section 1 of 5, complete sequence
Position Repeat Coverage Repeat
15873 TACA * 5 18/20 TACA TACA TACA TATG TACA
25906 GGTG * 5 18/20 GGTG GGCG GATG GGTG GGTG
61801 TAAA * 5 18/20 TAAA TAAA TAAA TAAA ATAA
70986 CAGA * 5 19/20 CAGA CAGA CAGA CTGA CAGA
103157 TTAA * 5 18/20 TTAA TCAA TTAA TTTA TTAA
107149 TATG * 11 40/44 TATG TATG TACG TATG TATG TATG TATG TATG TATG TGCG CATG
109442 ATGT * 5 18/20 ATGT GTAT ATGT ATGT ATGT
121204 ACGG * 7 26/28 ACGG ACAG ACGG ACGG ACTG ACGG ACGG
125183 ATAC * 5 18/20 ATAC ATAT ACAC ATAC ATAC
135931 TTAT * 5 19/20 TTAT TTAT TCAT TTAT TTAT
189134 AGGC * 6 22/24 AGGC AGGC AGGC GGGC AGGC AGGA
191167 CGAT * 6 22/24 CGAT CGAT CAAT CGAT CGAT CAAT
253619 ATGT * 7 26/28 ATGT ATGT ATGT ATGT ATGT ATGT GTAT
257922 TTAA * 6 22/24 TTAA CTAA TTAA TTAA TTAA TTTA
258387 CAAA * 8 30/32 CAAA CAAA CAAA CAAA CAAG CAGA CAAA CAAA
287002 TGTT * 5 18/20 TGTT TGTT TGTT CGTT CGTT
287022 CGTT * 5 18/20 CGTT CGTT GGTT CGTT TGTT
-----------------------------------------------------------------------------
Total sequence length......................... 292926
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 17
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
ATAC-1 ATGT-2 AGGC-1 ACGG-1 TAAA-1 TATG-1 TACA-1 TTAA-2
TTAT-1 TGTT-1 GGTG-1 CAAA-1 CAGA-1 CGAT-1 CGTT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7316092|gb|AE002629.1|AE002629 Drosophila melanogaster genomic scaffold 142000013386033, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------
Total sequence length......................... 0
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------
Genomic sequence...
gi|7295629|gb|AE003574.1|AE003574 Drosophila melanogaster genomic scaffold 142000013386033 section 2 of 2, complete sequence
Position Repeat Coverage Repeat
13179 GAAT * 8 29/32 GAAT GAAT GAAT TAAT GAAT GAAT GAAT GATG
30866 TGTC * 5 18/20 TGTC AGTC TGTC TGTC TGCC
35081 CTGA * 5 18/20 CTGA ATGA CTGG CTGA CTGA
35725 TAGA * 5 18/20 TAGA TAGA TATA TAGA AAGA
43164 ATAC * 8 29/32 ATAC ATAC ATAC ATAC ATAC ATAC ATAG GTCC
88740 ATGT * 5 18/20 ATGT ACGT ATGT ATGT ATGG
125110 TATG * 6 22/24 TATG TATG TATG TATG TTTA TATG
160818 ATAC * 5 19/20 ATAC ATAC ATAC ATAC ATAT
186954 TGAC * 8 30/32 TGAC TGAC TGAC TGAC TGAT TGAC TGCC TGAC
193064 TGTA * 5 18/20 TGTA CATA TGTA TGTA TGTA
203752 CATA * 5 19/20 CATA CATA CATA CATA TATA
213538 GACA * 5 18/20 GACA GTCG GACA GACA GACA
215198 CTGT * 5 18/20 CTGT CTGT CTGT TTGT CCGT
228455 TATT * 5 18/20 TATT TATT TATT CTTT TATT
-----------------------------------------------------------------------------
Total sequence length......................... 274456
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
ATAC-2 ATGT-1 TATT-1 TATG-1 TAGA-1 TGAC-1 TGTA-1 TGTC-1
GAAT-1 GACA-1 CATA-1 CTGA-1 CTGT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7295620|gb|AE003573.1|AE003573 Drosophila melanogaster genomic scaffold 142000013386033 section 1 of 2, complete sequence
Position Repeat Coverage Repeat
33315 CCAT * 5 18/20 CCAT CCAT CCAT CCAT CTAC
43670 TTAA * 5 18/20 TTAA TTAA TAAA TTAC TTAA
48301 TTTA * 5 18/20 TTTA TTTA TTTA TTTA TTAT
48328 TTAT * 6 22/24 TTAT TTAT TTAT TTAT TTAT TATT
98933 GTCC * 5 18/20 GTCC GTCC GTCT ATCC GTCC
110953 TACA * 6 22/24 TACA TACA TACA TACA TACA TGTA
113047 TACA * 5 18/20 TACA TACA TACA TACA TAGT
113459 TGTC * 5 18/20 TGTC CGTC TGTC TGTC CGTC
125892 TGTA * 5 18/20 TGTA TGTA TGTA TGTA CATA
128459 ATTT * 6 22/24 ATTT ATTT ATTT ATTG ATTT ACTT
147506 AATA * 5 20/20 AATA AATA AATA AATA AATA
166069 TCAA * 5 18/20 TCAA TCAA TCAA TCAG GCAA
204728 TTAC * 5 18/20 TTAC ATAC ATAC TTAC TTAC
210612 GTCA * 10 36/40 GTCA GTCA GTCA GTCA GTCA GTCA GTCG GTCA TTCA GGCG
228440 TAAA * 5 18/20 TAAA TAAA TAAA TAAA TTTA
-----------------------------------------------------------------------------
Total sequence length......................... 262131
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 15
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AATA-1 ATTT-1 TAAA-1 TACA-2 TTAA-1 TTAT-1 TTAC-1 TTTA-1
TGTA-1 TGTC-1 TCAA-1 GTCA-1 GTCC-1 CCAT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7288912|gb|AE002813.1|AE002813 Drosophila melanogaster genomic scaffold 142000013385227, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------
Total sequence length......................... 2620
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------
Genomic sequence...
gi|7289135|gb|AE002822.1|AE002822 Drosophila melanogaster genomic scaffold 142000013385417, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------
Total sequence length......................... 1638
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------
Genomic sequence...
gi|7289301|gb|AE002567.1|AE002567 Drosophila melanogaster genomic scaffold 142000013385554, complete sequence
Position Repeat Coverage Repeat
53704 TGTC * 5 18/20 TGTC CGTC TGTC CGTC TGTC
-----------------------------------------------------------------------------
Total sequence length......................... 84373
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
TGTC-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7289214|gb|AE002930.1|AE002930 Drosophila melanogaster genomic scaffold 142000013385493, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------
Total sequence length......................... 1282
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------
Genomic sequence...
gi|7289226|gb|AE003341.1|AE003341 Drosophila melanogaster genomic scaffold 142000013385503, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------
Total sequence length......................... 1242
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------
Genomic sequence...
gi|7316107|gb|AE002566.1|AE002566 Drosophila melanogaster genomic scaffold 142000013386054, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------
Total sequence length......................... 0
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------
Genomic sequence...
gi|7291169|gb|AE003451.1|AE003451 Drosophila melanogaster genomic scaffold 142000013386054 section 35 of 35, complete sequence
Position Repeat Coverage Repeat
4972 ATAA * 5 18/20 ATAA AAAA ATAT ATAA ATAA
19020 CAAC * 5 18/20 CAAC CAAC CAAG TAAC CAAC
30283 CGAA * 5 18/20 CGAA CGAA CGAA CGAA CAAC
30303 CGAC * 5 18/20 CGAC CGAC CGAC CGAC CGTT
33204 GACC * 5 18/20 GACC GACC GACC GACC GCAC
53860 AACG * 5 19/20 AACG AACG AACC AACG AACG
83348 TTAT * 5 18/20 TTAT TTGT TTAT TTAT TTAA
101799 TATG * 9 33/36 TATG TATG TATG TTTG TATG TATG TATG CATG CATG
108544 GTAT * 5 19/20 GTAT GTAT GTAT GTAT GTAG
108663 CTTC * 5 19/20 CTTC CTTC CTTT CTTC CTTC
109252 TAAA * 5 18/20 TAAA TAAA TAAA TAAA TAGT
141971 AGTC * 5 18/20 AGTC AGTC AGTC ATTT AGTC
157287 ACAT * 6 22/24 ACAT ACAT ATAT ACAT ACAT AAAT
158662 ATAA * 5 18/20 ATAA ATAA AAAA ATAT ATAA
160092 AATC * 5 18/20 AATC AATC AATC AATC TAAC
165021 ATAG * 6 23/24 ATAG ATGG ATAG ATAG ATAG ATAG
181807 ACCG * 8 29/32 ACCG ACCA ACCG ACCG GCCG ACCG ACCG AACG
186689 AGAC * 8 29/32 AGAC AGAG AGAC AAAC AGAC AGAC AGAC AGAA
187550 TATG * 6 22/24 TATG TATG TATG TACA TATG TATG
189629 AGTT * 5 19/20 AGTT AGTT AGTT AGTC AGTT
190621 GGTG * 5 18/20 GGTG TGTG TGTG GGTG GGTG
203035 ACAG * 5 19/20 ACAG ACAG ACAG GCAG ACAG
207117 CCAT * 5 20/20 CCAT CCAT CCAT CCAT CCAT
-----------------------------------------------------------------------------
Total sequence length......................... 220623
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 23
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AATC-1 AACG-1 ATAA-2 ATAG-1 AGAC-1 AGTT-1 AGTC-1 ACAT-1
ACAG-1 ACCG-1 TAAA-1 TATG-2 TTAT-1 GACC-1 GTAT-1 GGTG-1
CAAC-1 CTTC-1 CGAA-1 CGAC-1 CCAT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7291133|gb|AE003450.1|AE003450 Drosophila melanogaster genomic scaffold 142000013386054 section 34 of 35, complete sequence
Position Repeat Coverage Repeat
34916 CACT * 5 18/20 CACT CACT CACT CACT CATC
75915 AGTC * 8 29/32 AGTC AGCC AGTC AGTC AGTC AGTC AGTG AGTT
95510 TGGA * 5 18/20 TGGA TGGG TGGA TGGG TGGA
96499 AAAT * 5 18/20 AAAT AAAC ATAT AAAT AAAT
97758 ATAC * 6 22/24 ATAC ATAC ATAC ATAC CTAT ATAC
98526 AGCG * 5 18/20 AGCG AGCG AGCG AGAG AGAG
123968 TCTA * 5 18/20 TCTA TCTA TCTA TCTA TCCG
152854 TTAT * 8 29/32 TTAT TTAT TTAT TTAT TTAT TTAT TTGT TTTG
157183 CATC * 5 18/20 CATC CATC CATC CGAC CATC
164696 TTGG * 5 18/20 TTGG TTGC TTGG TTGG TTGA
186447 TGTT * 5 19/20 TGTT TATT TGTT TGTT TGTT
199211 ACAA * 5 18/20 ACAA ACAA ATTA ACAA ACAA
206468 CATA * 5 18/20 CATA TATA CATA CATA TATA
217103 TGTA * 5 18/20 TGTA TGTA TGTA TGTA TATG
273800 TGGT * 8 29/32 TGGT TGGT TGGT TGGT TGGT TGGC TGGG TGGA
283339 GATC * 5 19/20 GATC GATC GATC GATC GGTC
-----------------------------------------------------------------------------
Total sequence length......................... 300732
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 ATAC-1 AGTC-1 AGCG-1 ACAA-1 TTAT-1 TTGG-1 TGTA-1
TGTT-1 TGGA-1 TGGT-1 TCTA-1 GATC-1 CATA-1 CATC-1 CACT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7291099|gb|AE003449.1|AE003449 Drosophila melanogaster genomic scaffold 142000013386054 section 33 of 35, complete sequence
Position Repeat Coverage Repeat
14636 TGGT * 5 18/20 TGGT GGGT GGGT TGGT TGGT
18093 TTAG * 6 22/24 TTAG TTAG TTAG TTAG TCAG TCAG
48361 GCTT * 5 18/20 GCTT GCTT GCTG GCTT CCTT
60577 TATT * 6 22/24 TATT TGTT TATT TATT TGTT TATT
60950 TGAC * 13 48/52 TGAC TGAA TGAC TGAC TGAC TGAC TGAC TGAC TGAC TAAC TGAA TGAC TTAC
69163 TTTG * 5 19/20 TTTG TTTG TTTT TTTG TTTG
115824 AGTC * 8 30/32 AGTC AGTC AGTC AGTC AGTC AGTC AGTC ATCC
124140 TATG * 5 18/20 TATG TATG CATG TAAG TATG
144447 TACA * 5 19/20 TACA TACA TACA TACA CACA
159624 AACA * 5 18/20 AACA AATA AACC AACA AACA
160340 ATAC * 5 18/20 ATAC ATAT ATAC ATAT ATAC
162640 TTGT * 8 30/32 TTGT TTGT TTGT TTGT TTGT TTGT TTGC TTTT
170629 ATAC * 5 18/20 ATAC ATAC ATAC ATAT ATAG
178673 ACAG * 10 36/40 ACAG ACAG ACAG ACAG ACAG ACAG ACAG ATAG AGAT ACGG
179624 TGTC * 5 18/20 TGTC TGTC TGCC TGTC CGTC
183093 TTGT * 5 18/20 TTGT TTGT TTGT TTGT TCTT
222937 ACAT * 5 18/20 ACAT ACAT ACAT ACAT ATGT
227799 TCTG * 5 19/20 TCTG TCTG TTTG TCTG TCTG
234424 GTTG * 5 18/20 GTTG GTTG GTTG GTTG ATTT
259040 TGTT * 6 24/24 TGTT TGTT TGTT TGTT TGTT TGTT
262870 TTTG * 6 23/24 TTTG TTTG TTTG TTTG TTTG CTTG
268589 TACA * 5 19/20 TACA TACA TACA TACA TAAA
269236 TCTA * 5 18/20 TCTA TGTA TCTA ACTA TCTA
277740 TTCT * 6 22/24 TTCT GTCT TTCT TTCT TTCT TTTT
-----------------------------------------------------------------------------
Total sequence length......................... 299786
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 24
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AACA-1 ATAC-2 AGTC-1 ACAT-1 ACAG-1 TATT-1 TATG-1 TACA-2
TTAG-1 TTTG-2 TTGT-2 TTCT-1 TGAC-1 TGTT-1 TGTC-1 TGGT-1
TCTA-1 TCTG-1 GTTG-1 GCTT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7291077|gb|AE003448.1|AE003448 Drosophila melanogaster genomic scaffold 142000013386054 section 32 of 35, complete sequence
Position Repeat Coverage Repeat
2103 CAGC * 5 18/20 CAGC TAGC CAGT CAGC CAGC
9717 CAAC * 7 27/28 CAAC CAAC CAAC CAAC CAAC GAAC CAAC
29822 CGCA * 6 22/24 CGCA CGCA TGCA CGAA CGCA CGCA
45395 TTGT * 6 23/24 TTGT TTGT TTGT TTGT TTGT CTGT
50199 ATTT * 5 18/20 ATTT ATTT ATTT TTTT TTTT
64955 TGTA * 5 19/20 TGTA TGTA AGTA TGTA TGTA
65434 ACGG * 5 18/20 ACGG ACAG ACGG ACGG ACAG
74158 ATAA * 5 18/20 ATAA ATGA ATTA ATAA ATAA
74649 ACTG * 5 20/20 ACTG ACTG ACTG ACTG ACTG
76678 TTGG * 7 26/28 TTGG TTGT TTGC TTGG TTGG TTGG TTGG
78719 CTTT * 5 18/20 CTTT CTTT CTTT TTTC CTTT
81781 CTTT * 5 18/20 CTTT CTTT CTTT TTTT TTTT
83824 GGAG * 6 22/24 GGAG AGAG GGAG GGAG GGAG CGAG
91303 CAAA * 6 22/24 CAAA CAAA CAAA TAAA TAAA CAAA
91363 AAAC * 6 22/24 AAAC CAAC AAGC AAAC AAAC AAAC
94015 AATA * 5 18/20 AATA ATTA AATA AATA AATT
96508 GACT * 6 22/24 GACT GAGT GACT GACT GACT GGCT
102007 ATGG * 8 30/32 ATGG ATGG ATGG ATGG ATGG ATGG ATTG AGGG
106499 CCAT * 6 22/24 CCAT CCAA CTAT CCAT CCAT CCAT
106549 AACC * 5 18/20 AACC GACT AACC AACC AACC
112145 AACT * 6 22/24 AACT GACT AACT AACT AACT GACT
127070 TATC * 5 18/20 TATC TATC TATC TATA TATT
143915 TGGT * 6 22/24 TGGT TGGT TGGC TGGT TGGC TGGT
147680 ATCA * 5 18/20 ATCA ATCT ATCA ATCA ATAA
180119 ACAT * 5 18/20 ACAT ACAT ACAA ACAC ACAT
185990 GTCC * 5 18/20 GTCC GTTC GTCC GTCC GTCG
197987 GCCA * 5 18/20 GCCA CGCA GCCA GCCA GCCA
198008 CCAG * 15 56/60 CCAG CCAG CCAG CCAG CCAG CCAG CCAG CCAG CCAG CCAG CCAG CCAG TCAG CCAG ACGT
234071 AAAT * 5 19/20 AAAT AAAT AAAT AAAT AAAC
272540 TCGC * 5 19/20 TCGC TCTC TCGC TCGC TCGC
290367 CCCA * 5 18/20 CCCA ACCA CCCA ACCA CCCA
298761 ACTG * 5 18/20 ACTG ATTG ACTG ACTG CCTG
298791 TGAC * 5 18/20 TGAC TGAC TGAG TGCC TGAC
298813 ACTG * 5 19/20 ACTG ACTT ACTG ACTG ACTG
302392 TGGA * 5 19/20 TGGA TGGA TGGA TGGA TGGT
303774 CCAA * 5 19/20 CCAA CCAT CCAA CCAA CCAA
-----------------------------------------------------------------------------
Total sequence length......................... 310399
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 36
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 AAAC-1 AATA-1 AACT-1 AACC-1 ATAA-1 ATTT-1 ATGG-1
ATCA-1 ACAT-1 ACTG-3 ACGG-1 TATC-1 TTGT-1 TTGG-1 TGAC-1
TGTA-1 TGGA-1 TGGT-1 TCGC-1 GACT-1 GTCC-1 GGAG-1 GCCA-1
CAAA-1 CAAC-1 CAGC-1 CTTT-2 CGCA-1 CCAA-1 CCAT-1 CCAG-1
CCCA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7291054|gb|AE003447.1|AE003447 Drosophila melanogaster genomic scaffold 142000013386054 section 31 of 35, complete sequence
Position Repeat Coverage Repeat
441 ACTA * 5 19/20 ACTA ACTA ACTA ACTT ACTA
773 TACA * 5 18/20 TACA TACA TACA TATA TATA
67194 TCTA * 5 18/20 TCTA TCTC TCTC TCTA TCTA
69416 CTCG * 5 18/20 CTCG CTCG CTCG CTCG CTTT
71102 TCTG * 6 22/24 TCTG TTTG TCTG TCTG TCGG TCTG
86087 GGAA * 5 18/20 GGAA GAAA GGAA GGAA GGCA
87079 ACAG * 5 19/20 ACAG ACAG ACAG ACAG ACAT
94442 ACAA * 6 22/24 ACAA ACAA ACAA ACAA ACAG ACCA
102111 TATG * 5 18/20 TATG TATG TGTA TATG TATG
112872 AGCG * 5 18/20 AGCG AGCA AGCG AGCG AGAG
113897 CATA * 5 18/20 CATA CACA CATA CATA TATA
130116 TATG * 5 18/20 TATG TATG TATG TACA TATG
131008 TATG * 5 19/20 TATG CATG TATG TATG TATG
136309 TTTA * 5 18/20 TTTA TTTA TTTA TTTT TTTT
144048 ACTG * 6 22/24 ACTG ACGG ACTG ACTG ACTG AATG
144078 TGAC * 15 54/60 TGAC TCAC TGGC TGAC TGAC TGAC TGAC TGAC TGAC TGAC TGAC TGGC GGAC TGAG TGAG
157341 ATAA * 5 18/20 ATAA ATAA ATAA AAAA ATAT
165090 CTTT * 6 23/24 CTTT CTTT CTTT CTTT CTAT CTTT
166097 ACAT * 8 29/32 ACAT ACAT ACAT ACAT ACAT ACAT GCAT ATGT
172132 CCAT * 6 22/24 CCAT CCAA CCAT CCAG CCAT CCAT
192333 ATAC * 5 19/20 ATAC ATAC ATAC ATAC ATAT
216199 ACAT * 5 18/20 ACAT ACAT ACAT AAAA ACAT
293197 CTGA * 7 26/28 CTGA CTGA CTGA CTGA CTGA CTGG CTGT
-----------------------------------------------------------------------------
Total sequence length......................... 304060
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 23
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
ATAA-1 ATAC-1 AGCG-1 ACAA-1 ACAT-2 ACAG-1 ACTA-1 ACTG-1
TATG-3 TACA-1 TTTA-1 TGAC-1 TCTA-1 TCTG-1 GGAA-1 CATA-1
CTTT-1 CTGA-1 CTCG-1 CCAT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290992|gb|AE003446.1|AE003446 Drosophila melanogaster genomic scaffold 142000013386054 section 30 of 35, complete sequence
Position Repeat Coverage Repeat
12178 CATA * 5 18/20 CATA CACA TATA CATA CATA
32697 ATGG * 8 30/32 ATGG TTGG TTGG ATGG ATGG ATGG ATGG ATGG
43022 ATGT * 6 22/24 ATGT ATGT ATGT ATGT ATGT GTAT
43926 GTTG * 9 33/36 GTTG GTTT GTTG GTTG GTTG GTTG GTTG GTTG GAAG
61218 ACAT * 6 22/24 ACAT ACGT ACAT CCAT ACAT ACAT
77521 TATG * 5 18/20 TATG TATG TATG TATG TCAG
92420 TTTG * 5 18/20 TTTG TTTG TTTG TTTT TTTT
96611 GAAT * 6 22/24 GAAT GAAT GAAT AAAC GAAT GAAT
97503 CCCA * 5 18/20 CCCA ACCA CCCA ACCA CCCA
97669 TGGA * 6 22/24 TGGA TGGT TGGA TGGC TGGA TGGA
97694 GGAT * 5 18/20 GGAT GAAT GGAT GGGT GGAT
101663 GATT * 5 19/20 GATT GATT AATT GATT GATT
109140 ATAC * 6 23/24 ATAC CTAC ATAC ATAC ATAC ATAC
142644 AAAC * 6 22/24 AAAC AAAC AAAC AAAC AAAC AACT
176049 TTAT * 5 19/20 TTAT TTAT TTAT TTAT TTAC
181632 ACCC * 5 18/20 ACCC AACC ACCC ATCC ACCC
190828 AAAC * 5 18/20 AAAC AAAC AAAA AAAC AAAA
194391 TTAT * 6 22/24 TTAT TTGT TTAT TTAT TTAT TTGT
233874 TATG * 5 18/20 TATG TATG TATG TATA TACG
254623 AGAT * 5 18/20 AGAT TGAT AGAT AGAT ATAT
257330 GTAT * 5 19/20 GTAT GTAT GTAT GTGT GTAT
258862 CATA * 5 18/20 CATA AATA CATG CATA CATA
259018 TTGG * 5 18/20 TTGG ATGG TTGG ATGG TTGG
259038 ATGG * 5 18/20 ATGG ATGG ATTG GTGG ATGG
259059 TGGA * 8 30/32 TGGA TGGG TGGA TGGA TGGA TGGG TGGA TGGA
259178 ACTG * 7 26/28 ACTG ACTG ACTG CCTG ACTG ACTG AATG
293966 GACA * 9 33/36 GACA GACA CACA GACA GACA GACA GACA GTCA GGCA
302767 CCAG * 6 23/24 CCAG CCAG CCAG CCAG CCAA CCAG
-----------------------------------------------------------------------------
Total sequence length......................... 303104
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 28
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAC-2 ATAC-1 ATGT-1 ATGG-2 AGAT-1 ACAT-1 ACTG-1 ACCC-1
TATG-2 TTAT-2 TTTG-1 TTGG-1 TGGA-2 GAAT-1 GATT-1 GACA-1
GTAT-1 GTTG-1 GGAT-1 CATA-2 CCAG-1 CCCA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290970|gb|AE003445.1|AE003445 Drosophila melanogaster genomic scaffold 142000013386054 section 29 of 35, complete sequence
Position Repeat Coverage Repeat
13181 CCAT * 5 18/20 CCAT CCAG CCAT CCAG CCAT
13441 ATGA * 5 19/20 ATGA ATGA ATGG ATGA ATGA
44714 TACA * 5 18/20 TACA TACA TACA TATA TATA
45940 TTTG * 5 18/20 TTTG TTTG TTAT TTTG TTTG
78387 TGTA * 5 18/20 TGTA TGTA TGTA TATA TATA
98576 GAGC * 5 18/20 GAGC GAGC GAGC AAGC GAGA
99651 TGTA * 6 22/24 TGTA TGTA TGTG TGTA TGTA TGAA
104254 AAAT * 6 22/24 AAAT AAAT AAAT AAAA AAAT AAAA
112331 CGTG * 5 18/20 CGTG TATG CGTG CGTG CGTG
117318 TGGC * 8 29/32 TGGC TGAC TGGC TGGC TGAC TGGC TGGC TGGA
131806 TCAG * 5 18/20 TCAG TCAG TCAG TCAG TTGG
132995 AAAC * 5 20/20 AAAC AAAC AAAC AAAC AAAC
200508 TATG * 5 18/20 TATG TTTG TATG TATT TATG
207450 CTCG * 5 18/20 CTCG CTCG CTTG CTCG CTCT
207482 CTCC * 6 22/24 CTCC CTCC CTCC CTCT CTCC CTCT
216063 CCAC * 5 19/20 CCAC CCAC CCAG CCAC CCAC
228461 TGCC * 5 18/20 TGCC TCGC TGCC TGCC TGCC
264937 AGTC * 5 18/20 AGTC ATTC ATTC AGTC AGTC
265164 ACAT * 5 19/20 ACAT ACAT ACAT ACAT ACAC
274514 ACAA * 6 22/24 ACAA ACAA ACAA ACAA ACAA AGAG
277606 TTTA * 6 22/24 TTTA TTTA TTCA TGTA TTTA TTTA
287547 ATAC * 5 18/20 ATAC ATAC ATAC AAAC ATAT
290297 AAAT * 5 18/20 AAAT AAAT AAAT AAAT CAAA
291270 GGGA * 5 18/20 GGGA GGGA GGGA GGGA GGAG
293710 TATT * 5 18/20 TATT TATT TATT TATT TGTG
305335 CAAC * 5 18/20 CAAC TAAC CAAC CAAA CAAC
310959 ATAC * 7 26/28 ATAC ATAC ATAT ATAT ATAC ATAC ATAC
-----------------------------------------------------------------------------
Total sequence length......................... 313965
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 27
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-2 AAAC-1 ATAC-2 ATGA-1 AGTC-1 ACAA-1 ACAT-1 TATT-1
TATG-1 TACA-1 TTTA-1 TTTG-1 TGTA-2 TGGC-1 TGCC-1 TCAG-1
GAGC-1 GGGA-1 CAAC-1 CTCG-1 CTCC-1 CGTG-1 CCAT-1 CCAC-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290927|gb|AE003444.1|AE003444 Drosophila melanogaster genomic scaffold 142000013386054 section 28 of 35, complete sequence
Position Repeat Coverage Repeat
1450 ATAC * 8 30/32 ATAC ATGC ATAT ATAC ATAC ATAC ATAC ATAC
4709 ATAC * 5 19/20 ATAC ATAC ATAC ATAC ATAT
5973 CACG * 5 19/20 CACG CACG CACG CGCG CACG
15127 CAAA * 8 29/32 CAAA CAAA CAAA CAAA CAAA CGAA CGAA CGAA
29981 TACA * 6 22/24 TACA TACA TACA TGCA TATA TACA
35777 CTAT * 13 47/52 CTAT TTAT CTAT CTAT CTAA CTAT CTAT ATAT CTAT CTAT CTAT CTAT ATAA
38975 TCAC * 8 31/32 TCAC TCAC TCAT TCAC TCAC TCAC TCAC TCAC
78986 TGAT * 5 18/20 TGAT TGTT TGAT TGTT TGAT
95505 TATG * 5 19/20 TATG TATG TATG TATG TATA
99859 TACA * 5 18/20 TACA TACA TACA TACA TATG
103405 AATA * 5 19/20 AATA AATA AATA AAGA AATA
104538 TACA * 5 18/20 TACA TACA TACA TACA TAAT
107105 TATG * 6 22/24 TATG TATG CATG TATG TATG TGTG
107977 TCAT * 5 20/20 TCAT TCAT TCAT TCAT TCAT
126516 TATG * 6 22/24 TATG TATG TATG TCTG TATA TATG
164335 TATG * 5 18/20 TATG TATA TATG TATA TATG
167318 CAGA * 8 29/32 CAGA CAGA TAGA CAGA CAGA CAGA CAGG CAGG
202450 ACCA * 5 18/20 ACCA ACCA ACCA AGCA AGCA
208115 GTTA * 6 23/24 GTTA GTTA GTTA GTTA GTTC GTTA
209587 ATTT * 5 19/20 ATTT CTTT ATTT ATTT ATTT
214637 TTAT * 5 18/20 TTAT TTAT TTAT ATAT ATAT
222670 CTTT * 5 20/20 CTTT CTTT CTTT CTTT CTTT
230295 CTGT * 6 22/24 CTGT CTGC CTGT CTGT CTGT CTCT
257688 ACAT * 7 26/28 ACAT ACAA ACAT ACAT ACAT ACGT ACAT
260251 ACAA * 6 22/24 ACAA ACAA ACAA ACAA ACAA GCCA
290017 ATTT * 5 18/20 ATTT ATTA ATTT ATTT AGTT
293004 ATAC * 6 22/24 ATAC ATAC ATAC ATGC ATAC ATAT
-----------------------------------------------------------------------------
Total sequence length......................... 300710
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 27
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AATA-1 ATAC-3 ATTT-2 ACAA-1 ACAT-1 ACCA-1 TATG-4 TACA-3
TTAT-1 TGAT-1 TCAT-1 TCAC-1 GTTA-1 CAAA-1 CAGA-1 CACG-1
CTAT-1 CTTT-1 CTGT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290880|gb|AE003443.1|AE003443 Drosophila melanogaster genomic scaffold 142000013386054 section 27 of 35, complete sequence
Position Repeat Coverage Repeat
16778 AAAT * 5 19/20 AAAT AAAT AAAT AAAT AGAT
18375 AATT * 5 18/20 AATT AATT AATT AATT CAGT
29973 AAAT * 5 18/20 AAAT AAAT AAGT AATT AAAT
47462 ATCC * 6 22/24 ATCC AGCA ATCC ATCC ATCC ATCC
55032 CATA * 5 18/20 CATA CATA CATA CATA TATG
58708 TTTG * 5 18/20 TTTG TTTG TTTT TTTT TTTG
64921 GTCC * 5 19/20 GTCC GTCC GTCT GTCC GTCC
82448 TGTA * 6 22/24 TGTA TTTA TGTT TGTA TGTA TGTA
85228 ACAT * 6 22/24 ACAT ACAT ACAT ACAT ATAT GCAT
102427 TATG * 5 18/20 TATG TATG TACA TATG TATG
113834 TATG * 6 22/24 TATG TATG TACA TATG TATG TATG
114042 CCAA * 13 47/52 CCAA CCAA CCAA CCAA CCAA CCAA CCAA CCAA CCAA CCAG CTAC CCAA ACCA
119088 ATAA * 5 18/20 ATAA ATAA ACAA ATAA ACAA
149340 AGCC * 8 29/32 AGCC AGCC AGCC AGCC AGCC AGTT AGCC AGGC
150730 AAAT * 7 26/28 AAAT AAAT AAAT AAAT AAAT AAAA AAAC
192762 CTGT * 5 18/20 CTGT CTAT CTGT ATGT CTGT
192787 TGTC * 5 18/20 TGTC TGTC TGTC TGTT TGAC
216238 ATGT * 5 19/20 ATGT ATGT ATGT ATGT ATGA
224458 ATAC * 5 18/20 ATAC ATAC ATAC ATAT ATGC
232380 TATG * 5 18/20 TATG TATG TATG TACG TATA
237414 TACA * 5 18/20 TACA TACA TACA TATA CACA
245993 TAAA * 5 18/20 TAAA TGAA TAAA TAAA TAAC
249065 CGTT * 8 29/32 CGTT CGTT TGTT CGTT CGTT CGTT CGCT TGTT
249968 TTCA * 13 50/52 TTCA TTCA TTCA TTCA TTCA CTCA TTCA TTCA TTCA TTCA TTCA TTCA TTCT
255000 CATA * 6 23/24 CATA CACA CATA CATA CATA CATA
259016 ATAC * 9 35/36 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAA
264412 AATA * 8 29/32 AATA AATA AATA AATA AATA AATA AATC AAAG
268410 TGGC * 5 18/20 TGGC TGGC TGGC TGGT TGGT
283920 TATG * 5 18/20 TATG TATG TATG TACA TATG
300733 TATG * 5 19/20 TATG TATG TATG TATG TGTG
301744 TGTA * 5 18/20 TGTA TGTA CATA TGTA TGTA
301997 TACA * 5 18/20 TACA TATG TACA TACA TACA
-----------------------------------------------------------------------------
Total sequence length......................... 302357
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 32
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-3 AATA-1 AATT-1 ATAA-1 ATAC-2 ATGT-1 ATCC-1 AGCC-1
ACAT-1 TAAA-1 TATG-5 TACA-2 TTTG-1 TTCA-1 TGTA-2 TGTC-1
TGGC-1 GTCC-1 CATA-2 CTGT-1 CGTT-1 CCAA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290831|gb|AE003442.1|AE003442 Drosophila melanogaster genomic scaffold 142000013386054 section 26 of 35, complete sequence
Position Repeat Coverage Repeat
5300 ATTT * 9 33/36 ATTT AAAT ATTT ATTT ATTT ATTT ATTT ATTT ATTG
27819 ACAA * 5 18/20 ACAA GCAA GCAA ACAA ACAA
29349 ACAA * 7 26/28 ACAA GCAA ACAA ACAA ATAA ACAA ACAA
37887 AATT * 5 18/20 AATT AACT AATT AATT GATT
38260 CCAA * 6 22/24 CCAA CCAA CCAA CCAA CTAA CTAA
47254 ATAC * 7 26/28 ATAC ATAC ATAC ATAC ATAC ATAG ATAT
48089 TATG * 5 18/20 TATG TACA TATG TATG TATG
57040 TATG * 10 36/40 TATG TATG TATG TATG TATG TATG TATG TATG AAAC TATA
57361 GTGG * 5 18/20 GTGG TTGG GTGG TTGG GTGG
104822 CAAA * 5 18/20 CAAA CAAA CAAA CAAA AAAC
131104 GGTC * 6 22/24 GGTC GGTC GGTC GGTC GGTT GGTT
141475 ACAG * 5 18/20 ACAG ACAG ACAG ATAG ACAC
160036 ATTA * 5 18/20 ATTA ATTA ATTG GTTA ATTA
160331 TATG * 8 29/32 TATG TATG TATG TATG TATG TATG TTTG TTTT
180830 ATTT * 5 18/20 ATTT ATTT ATAT ATTT ATAT
182458 TTTA * 5 18/20 TTTA TTTA TTAA CTTA TTTA
182895 CATC * 8 30/32 CATC CATC CATC CATC CATC CACC CATC CACC
195472 CTGA * 9 33/36 CTGA CAGA CTGA CTGA CTGA CTGG CTGA CTAA CTGA
208065 CTTT * 5 18/20 CTTT CTTT TTTT CTTT TTTT
224076 ACAG * 10 37/40 ACAG ACAG ACAG CCAG ACAG ACAG ACAG GCAG ACAG GCAG
224851 TTTA * 5 18/20 TTTA TTTA TTTA TTTT TTTT
233292 CTAT * 5 18/20 CTAT CTTT CTAT CTTT CTAT
235508 TTTG * 5 18/20 TTTG TTGG TTGG TTTG TTTG
243031 TTGG * 15 54/60 TTGG TTGG TTGG TTTG TTGG TTGG TTGG TTGG TTGG TTGA TTGA TTGG TTGA TTGA TTGA
263815 ACCA * 8 29/32 ACCA ACCA ACCA ACCA ACCA ACCA ATCA ATCT
278322 CTGA * 5 18/20 CTGA CTAA CTGA CTAA CTGA
278345 ACTG * 7 26/28 ACTG ACTG ATTG ACTG ACTG GCTG ACTG
279595 TATG * 5 19/20 TATG TATG TATG TTTG TATG
283575 TTTG * 6 22/24 TTTG TTTG TTTG TTTG TTTG TGTT
285719 GTTG * 5 18/20 GTTG GTTG GTTG GGTG GCTG
294763 CGCT * 5 19/20 CGCT CGCT CACT CGCT CGCT
301615 GTAT * 5 18/20 GTAT GTAT GTAT TTAC GTAT
-----------------------------------------------------------------------------
Total sequence length......................... 306267
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 32
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AATT-1 ATAC-1 ATTA-1 ATTT-2 ACAA-2 ACAG-2 ACTG-1 ACCA-1
TATG-4 TTTA-2 TTTG-2 TTGG-1 GTAT-1 GTTG-1 GTGG-1 GGTC-1
CAAA-1 CATC-1 CTAT-1 CTTT-1 CTGA-2 CGCT-1 CCAA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290819|gb|AE003441.1|AE003441 Drosophila melanogaster genomic scaffold 142000013386054 section 25 of 35, complete sequence
Position Repeat Coverage Repeat
13409 TCAG * 5 19/20 TCAG TCAG TCAT TCAG TCAG
14309 CTGA * 5 18/20 CTGA CAAA CTGA CTGA CTGA
27698 CCGT * 8 29/32 CCGT CCGT CCGT CCGT CCGT CCGT CCAC CCAT
51093 GTCC * 5 18/20 GTCC GCCC GTCC GTCC GTTC
59858 CAAA * 6 22/24 CAAA CAAA CAAA CAAA CAAC AAAA
67261 CAAC * 5 19/20 CAAC CAAC CAAC CAAC CAGC
75426 CTTT * 6 22/24 CTTT CTTT CATT CTTT CTTT TTTT
141712 TGAC * 5 19/20 TGAC TGAC TGAC TGAA TGAC
142015 AATG * 5 18/20 AATG AATG AATA AGTG AATG
147250 CTTC * 5 18/20 CTTC CTTC CTTC CATC CTGC
149636 TACA * 5 18/20 TACA TGCA TACA TAGA TACA
156166 ATTC * 5 18/20 ATTC ATTC ATTT ATTC ATTT
160645 ACAT * 5 18/20 ACAT ACAT ACAT ATAT ATAT
161103 TAAA * 5 18/20 TAAA TAAA TAAT TAAA TGAA
205919 ACAG * 5 18/20 ACAG ACGG AGAG ACAG ACAG
218053 AATA * 5 18/20 AATA AATA AATA AATA ACAA
241176 ATAG * 6 22/24 ATAG ATAG ATGG ATAG ATTG ATAG
246599 TGTC * 5 18/20 TGTC TGTC TGTC TGAC TGTG
262060 TGAA * 5 18/20 TGAA TGAA TGAA TGAG GGAA
264350 TTAT * 5 18/20 TTAT TTAT TTAT TTCT TTTT
-----------------------------------------------------------------------------
Total sequence length......................... 285272
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AATA-1 AATG-1 ATAG-1 ATTC-1 ACAT-1 ACAG-1 TAAA-1 TACA-1
TTAT-1 TGAA-1 TGAC-1 TGTC-1 TCAG-1 GTCC-1 CAAA-1 CAAC-1
CTTT-1 CTTC-1 CTGA-1 CCGT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290801|gb|AE003440.1|AE003440 Drosophila melanogaster genomic scaffold 142000013386054 section 24 of 35, complete sequence
Position Repeat Coverage Repeat
1282 ACTG * 6 24/24 ACTG ACTG ACTG ACTG ACTG ACTG
12452 AGTC * 5 18/20 AGTC AGTC AGTC TGGC AGTC
16054 GCCA * 5 19/20 GCCA GCCA GTCA GCCA GCCA
31545 GATG * 6 23/24 GATG GATG GATG GATG GCTG GATG
36687 CACC * 5 18/20 CACC CAAC CACC CACC GACC
37657 ATGG * 5 18/20 ATGG CTGG ATGG CTGG ATGG
37677 CTGG * 6 22/24 CTGG CTGC CTGG CTGG CTGG CTGC
37701 ATGA * 5 19/20 ATGA ATGA ATGA ATGA ATGG
39331 GATG * 5 18/20 GATG GATG GCTG GGTG GATG
45623 TGGC * 5 18/20 TGGC TGGC TGGT TGGC TGGG
56914 CCGT * 5 18/20 CCGT CCGT TTGT CCGT CCGT
65383 AAAT * 5 19/20 AAAT CAAT AAAT AAAT AAAT
69539 AACA * 5 18/20 AACA AACA AACA AACA AAAC
80283 TATG * 6 22/24 TATG TATG TATG TATG TATG TAAA
84300 TGTT * 5 18/20 TGTT CGTT CGTT TGTT TGTT
86038 AATA * 5 18/20 AATA AATC ACTA AATA AATA
100152 TGCG * 6 22/24 TGCG TGCG TGCG TGCG TGTG TGTG
107749 ATAC * 5 18/20 ATAC ATAC ATAC ATAT TTAC
124799 GATA * 5 19/20 GATA GATA GGTA GATA GATA
126957 CATA * 5 18/20 CATA CATA CATA TGTA CATA
128290 TCGC * 6 22/24 TCGC TCGC TCGC CCGC TCGC TCTC
129894 ACAT * 5 18/20 ACAT ACAT ACAT ACAT ATTT
132572 TACA * 6 22/24 TACA TATA TACA TACA TACA TATA
135887 GTCA * 5 18/20 GTCA GTTA GTCA GTCA GTCG
140440 GTCA * 7 27/28 GTCA GTCA GTCA GTCA GTCA GTCA CTCA
144522 TATG * 5 18/20 TATG TATG TATG TATG TACA
145626 TATG * 5 18/20 TATG TAAG TATG TATG CATG
163979 GTAT * 5 18/20 GTAT GTAT GTAT GTAT ATGT
190497 ACGG * 5 18/20 ACGG GCGG GCGG ACGG ACGG
192494 GTTC * 6 22/24 GTTC GTTC GTTC GTTC GTTC GTCT
193416 ACAT * 5 18/20 ACAT ACAT ATAT ACAC ACAT
196648 ACCG * 5 18/20 ACCG ACCC ACCG ACTG ACCG
199840 CATA * 5 19/20 CATA CATA CATA CATA TATA
212545 TATG * 5 18/20 TATG TATG TATG TATG TGGG
214568 ATAC * 5 18/20 ATAC ATAC ATAC ATTC ATCC
223588 CCAT * 6 23/24 CCAT CCAT CCAT CCAT CTAT CCAT
232547 TGAA * 5 18/20 TGAA CGAG TGAA TGAA TGAA
246623 TGGG * 5 18/20 TGGG TGGG TGGG TGTT TGGG
258872 CCAA * 6 22/24 CCAA CCAA CCAA CCAA GCAA CCAT
258896 CCAT * 7 28/28 CCAT CCAT CCAT CCAT CCAT CCAT CCAT
259316 TAAA * 5 18/20 TAAA AAAA TAAA TAAA AAAA
275540 ACCA * 7 26/28 ACCA ACCA ACCA ACCA ACCA ACCA GGCA
276311 TAAT * 5 18/20 TAAT TAAT TAAT TAAT AATT
276919 CTGA * 6 24/24 CTGA CTGA CTGA CTGA CTGA CTGA
277791 ACCA * 7 26/28 ACCA ACCA ACCA ACCA ACCA TCTA ACCA
282466 TAAA * 5 19/20 TAAA TAAA TAAG TAAA TAAA
283822 ATTT * 5 18/20 ATTT ATTT ATGC ATTT ATTT
290642 CATC * 11 40/44 CATC CATC CATC TATC CACC CATC CATC CATC CACC TATC CATC
299288 CCAT * 5 18/20 CCAT TCAT CCAT ACAT CCAT
-----------------------------------------------------------------------------
Total sequence length......................... 342068
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 49
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 AATA-1 AACA-1 ATAC-2 ATTT-1 ATGA-1 ATGG-1 AGTC-1
ACAT-2 ACTG-1 ACGG-1 ACCA-2 ACCG-1 TAAA-2 TAAT-1 TATG-4
TACA-1 TGAA-1 TGTT-1 TGGG-1 TGGC-1 TGCG-1 TCGC-1 GATA-1
GATG-2 GTAT-1 GTTC-1 GTCA-2 GCCA-1 CATA-2 CATC-1 CACC-1
CTGA-1 CTGG-1 CCAA-1 CCAT-3 CCGT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290764|gb|AE003439.1|AE003439 Drosophila melanogaster genomic scaffold 142000013386054 section 23 of 35, complete sequence
Position Repeat Coverage Repeat
302 GTTG * 5 18/20 GTTG GTTG GTTG GTTG CTTC
15201 TATG * 5 18/20 TATG TACA TATG TATG TATG
17987 ATAC * 5 19/20 ATAC ATAC ATAT ATAC ATAC
18048 TATG * 5 18/20 TATG TATG TGTG TGTG TATG
19969 TGTA * 5 18/20 TGTA TGTA GCTA TGTA TGTA
20000 ATAC * 5 19/20 ATAC ATAC ATAC ATAC ATAT
21587 ACAT * 6 22/24 ACAT ACAT ACAT ACAT ACAT ATCT
21784 ATAC * 6 22/24 ATAC ATAC ATAC ATAT GTAC ATAC
21984 TATG * 6 22/24 TATG TATG TACA TATG TATG TATG
22027 ATAC * 5 18/20 ATAC ATAC ATAT GTAC ATAC
24301 ATAC * 5 18/20 ATAC ATAC ATAC ATAG CTAC
24432 TACA * 7 26/28 TACA TACA TACA TACA TATG TACA TACA
26461 ATAC * 5 18/20 ATAC ATAC ATAC ATAT GTAC
52400 GCCA * 13 48/52 GCCA GCCA GCCA GCCA GCCA GGCA GCCA GCCA GCCA GCCA GGCA GCCA GTCG
52825 TACA * 5 18/20 TACA GACA TGCA TACA TACA
52870 ATAC * 5 18/20 ATAC ATAC ATAC ACAC ACAC
89689 ACAG * 5 18/20 ACAG ACAC ACAG ACAC ACAG
103239 CTCA * 5 19/20 CTCA CTCA CTCA CTCA CACA
103279 GAGC * 5 18/20 GAGC GAGC GAGA GAGG GAGC
140582 GTCA * 6 22/24 GTCA GTCA TTCA GTCA GTTA GTCA
145654 ACGG * 5 18/20 ACGG ACAG ACAG ACGG ACGG
146301 TTTA * 6 22/24 TTTA TTTA TTTT TTTA TTTA TTTT
173855 ATGT * 6 22/24 ATGT ATGT ATGT ATGT AAGT AAGT
181885 AATA * 5 18/20 AATA AATA AATA AATA ATAA
200063 CAAT * 8 30/32 CAAT CAGT CAAT CATT CAAT CAAT CAAT CAAT
202073 GCCA * 6 22/24 GCCA GCCA ACCA GCCA GCCA GCTA
209582 ACCC * 5 18/20 ACCC ACCC ACCT AGCC ACCC
211988 ATAC * 5 18/20 ATAC ATAC ATAC ATAT TTAC
268106 TACA * 7 26/28 TACA TACA TACA TACA TACA TACA TATG
275171 TACA * 5 19/20 TACA TACA TACA TACA AACA
275695 ATAC * 5 18/20 ATAC ACAC ACAC ATAC ATAC
275754 CATA * 6 22/24 CATA CATA CATA CATA TATA CGTA
279964 TGGT * 6 22/24 TGGT TGGA TGGT TGGT TGGT TGGA
309283 TTGG * 5 18/20 TTGG ATGG TTGG GTGG TTGG
-----------------------------------------------------------------------------
Total sequence length......................... 328089
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 34
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AATA-1 ATAC-9 ATGT-1 ACAT-1 ACAG-1 ACGG-1 ACCC-1 TATG-3
TACA-4 TTTA-1 TTGG-1 TGTA-1 TGGT-1 GAGC-1 GTTG-1 GTCA-1
GCCA-2 CAAT-1 CATA-1 CTCA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290724|gb|AE003438.1|AE003438 Drosophila melanogaster genomic scaffold 142000013386054 section 22 of 35, complete sequence
Position Repeat Coverage Repeat
631 TCGC * 5 18/20 TCGC TCTC TCGC TCGC TCTC
10450 CAAA * 6 22/24 CAAA CAAA CAAA CAAA CAAA TAGA
32609 AAAT * 5 18/20 AAAT AAAT AAAT AAAT ACAC
37837 TCTA * 5 18/20 TCTA TCTT TCTA TCTA TCTC
44546 TTGA * 5 18/20 TTGA TTGA TTGA CTGG TTGA
45947 CATA * 5 18/20 CATA TATA CATA CATA TATA
47546 CATA * 5 18/20 CATA CACA CAGA CATA CATA
50742 TCGG * 5 18/20 TCGG TCAG TCGG TCGG TCCG
62919 CAAA * 5 19/20 CAAA CGAA CAAA CAAA CAAA
71384 ATCC * 6 23/24 ATCC ATCT ATCC ATCC ATCC ATCC
76110 TATG * 5 18/20 TATG TATC TATG TATC TATG
79297 TACA * 5 18/20 TACA TACA TACA TATA TATA
80467 AACC * 5 18/20 AACC AACG AACC AACG AACC
85359 TTTG * 5 19/20 TTTG TTTG TTTG TTTT TTTG
90983 TCCA * 6 22/24 TCCA TCTA TCCA TCTA TCCA TCCA
115780 AACC * 5 18/20 AACC AAAC AACC AACC ACCC
122205 CATA * 5 19/20 CATA CATA CATA CATA CATT
126260 ATAC * 5 18/20 ATAC ATAC ATAC GTAC ATAT
142090 CAAC * 5 20/20 CAAC CAAC CAAC CAAC CAAC
180143 TATG * 6 22/24 TATG TACA TATG TATG TATG TATG
184023 TTGC * 5 19/20 TTGC TTGC TTGG TTGC TTGC
184424 GATC * 5 18/20 GATC GATC GTTC TATC GATC
189001 ATAC * 5 19/20 ATAC ATAC ATAC ATAC ATAT
193410 GTCC * 14 51/56 GTCC GTCC GTCC GTCC GTCC GTCC GTCC GTCC GTCC GTCC GTCC GTCC GTGT CAAC
193612 AACC * 5 18/20 AACC AAGC AACC AACC ATCC
193632 ATCC * 6 24/24 ATCC ATCC ATCC ATCC ATCC ATCC
197018 AAAT * 6 22/24 AAAT AAAC AAAC AAAT AAAT AAAT
198711 TCCG * 5 18/20 TCCG CCCG TCCG TCCG TCCT
200174 CCAT * 6 22/24 CCAT AGAT CCAT CCAT CCAT CCAT
207918 ATCG * 5 19/20 ATCG ATCG ATCG ACCG ATCG
208698 ATCG * 5 18/20 ATCG ATCG ATCG ATTG ATAG
211101 TGTC * 5 18/20 TGTC CGTC TGTC CGTC TGTC
235492 CCAG * 6 22/24 CCAG CCAG CCAG CCAG CCAG CCTT
241771 AGTT * 5 18/20 AGTT AGTT AGTT AGTT TGGT
250980 CATC * 5 20/20 CATC CATC CATC CATC CATC
252001 AAAT * 5 18/20 AAAT AAAT AAGA AAAT AAAT
257285 CCAG * 8 29/32 CCAG CCAG CCAG CCAG CCAA CCAA CCAG CAAG
273425 GATT * 5 19/20 GATT GATT GATT GATT GATG
278537 GTCC * 5 19/20 GTCC GTCT GTCC GTCC GTCC
-----------------------------------------------------------------------------
Total sequence length......................... 299372
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 39
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-3 AACC-3 ATAC-2 ATCG-2 ATCC-2 AGTT-1 TATG-2 TACA-1
TTTG-1 TTGA-1 TTGC-1 TGTC-1 TCTA-1 TCGG-1 TCGC-1 TCCA-1
TCCG-1 GATT-1 GATC-1 GTCC-2 CAAA-2 CAAC-1 CATA-3 CATC-1
CCAT-1 CCAG-2
----------------------------------------------------------------------------
Genomic sequence...
gi|7290686|gb|AE003437.1|AE003437 Drosophila melanogaster genomic scaffold 142000013386054 section 21 of 35, complete sequence
Position Repeat Coverage Repeat
1031 TGTA * 6 23/24 TGTA TGTA TGTA TGTA AGTA TGTA
6027 CTAT * 6 22/24 CTAT CTAT CTAT CTAT CTGT CTCT
31068 GTAT * 6 23/24 GTAT GTAT GTAT GTAT GTAT GCAT
33918 ATAC * 6 22/24 ATAC ATAC ATAC ATAC ATAC GTAT
94613 AAAT * 5 18/20 AAAT AAAT TAAT AAAT ATAT
109092 GAGC * 5 18/20 GAGC AAGC GAGC GAGC GAGA
122286 TTAT * 5 18/20 TTAT TTAT TTAT TTTT TTGT
141542 CCCT * 6 23/24 CCCT CCCT ACCT CCCT CCCT CCCT
148104 CTGA * 5 19/20 CTGA CTGA CTGA CTGA CTGG
171581 GTGC * 5 18/20 GTGC GTGT GTGC GTGT GTGC
194823 AAAT * 5 18/20 AAAT AAAT AAAT AAAT ACAA
204286 CGAC * 6 22/24 CGAC CGAC CGAC CGAC CGAC CACC
204442 CAAA * 5 18/20 CAAA CAAA CAAA CAAA CACC
207031 ATGT * 5 19/20 ATGT ATGT ATGT ATGT GTGT
209812 TACA * 5 18/20 TACA TATA TACA TACA TACG
210222 TTTC * 5 18/20 TTTC ATTG TTTC TTTC TTTC
224815 ATAC * 5 18/20 ATAC ATAC ATAC ATAT ATAT
225998 CTCA * 5 18/20 CTCA CTCT CTCA CTCT CTCA
230147 TCTG * 5 18/20 TCTG TCTG TCTG TCAG TGTG
230305 GTTA * 5 18/20 GTTA GTTA GTTA GTTA TTAA
238652 TATG * 5 19/20 TATG CATG TATG TATG TATG
242517 CATT * 6 22/24 CATT CATT CGTT CATT CATT CGTT
242542 ATTC * 5 18/20 ATTC ATTC ATTC GCTC ATTC
245989 ACAT * 10 38/40 ACAT GCAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAA
250486 CAAT * 6 22/24 CAAT CTGT CAAT CAAT CAAT CAAT
271335 GCTG * 6 22/24 GCTG GTTG GCTG ACTG GCTG GCTG
271971 GTTG * 5 18/20 GTTG GGTG GTTG GGTG GTTG
274388 CGAG * 8 29/32 CGAG CGAG CGAG CGAG CGAG AGAG AGAG AGAG
279187 CTAC * 6 22/24 CTAC CCAC CTAC CCAC CTAC CTAC
280387 TTAT * 5 18/20 TTAT TTAT TTAT TTCG TTAT
282770 CAGA * 6 22/24 CAGA CAGA CAGA CAAA AAGA CAGA
302740 ACCA * 8 29/32 ACCA ACCA ACCA ATCA ACCA ACCA CCCA CCCA
303011 TTAG * 6 23/24 TTAG CTAG TTAG TTAG TTAG TTAG
-----------------------------------------------------------------------------
Total sequence length......................... 305046
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 33
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-2 ATAC-2 ATTC-1 ATGT-1 ACAT-1 ACCA-1 TATG-1 TACA-1
TTAT-2 TTAG-1 TTTC-1 TGTA-1 TCTG-1 GAGC-1 GTAT-1 GTTA-1
GTTG-1 GTGC-1 GCTG-1 CAAA-1 CAAT-1 CATT-1 CAGA-1 CTAT-1
CTAC-1 CTGA-1 CTCA-1 CGAG-1 CGAC-1 CCCT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290653|gb|AE003436.1|AE003436 Drosophila melanogaster genomic scaffold 142000013386054 section 20 of 35, complete sequence
Position Repeat Coverage Repeat
25556 AATA * 5 19/20 AATA AATA TATA AATA AATA
62020 CGAT * 5 19/20 CGAT CGAT CAAT CGAT CGAT
70013 AAAG * 5 18/20 AAAG AAAG AAAG AAAA AAAA
95823 ACAT * 6 22/24 ACAT AAAT ACAT ACAT ACAT AGAT
98178 AAAC * 7 26/28 AAAC ACAC AAAC AAAC AAAC AAAT AAAC
104702 TCCT * 7 26/28 TCCT TCCT TCCG TCCT TCCT TCCT TCCG
114525 ATAC * 6 22/24 ATAC ATAT GTAC ATAC ATAC ATAC
142797 ACAA * 5 18/20 ACAA ACAA AAAA ACAA AAAA
170500 CCGT * 5 20/20 CCGT CCGT CCGT CCGT CCGT
188638 GTAA * 5 18/20 GTAA ATAA GTAA GGAA GTAA
189772 AACA * 6 23/24 AACA AACA AACA AACA AACA AACC
217696 AATA * 5 18/20 AATA AAAA AATA AAAA AATA
222021 TTTG * 6 22/24 TTTG TTTT TTTG TTTG TTTG TTTT
235811 AATA * 5 18/20 AATA AGCA AATA AATA AATA
240689 CGAT * 5 18/20 CGAT CGAT GGAT CGAT TGAT
281657 CCAC * 5 18/20 CCAC CCAC CCAC ACAC ACAC
-----------------------------------------------------------------------------
Total sequence length......................... 307017
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAG-1 AAAC-1 AATA-3 AACA-1 ATAC-1 ACAA-1 ACAT-1 TTTG-1
TCCT-1 GTAA-1 CGAT-2 CCAC-1 CCGT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290600|gb|AE003435.1|AE003435 Drosophila melanogaster genomic scaffold 142000013386054 section 19 of 35, complete sequence
Position Repeat Coverage Repeat
11492 CCAC * 5 18/20 CCAC CCAA ACAC CCAC CCAC
22226 TACA * 6 22/24 TACA TACA TACA CACA TACA TACT
22630 ATAC * 6 22/24 ATAC ATAC ATAC ATAC ATAT ATAA
24529 TTTG * 9 33/36 TTTG TTTT TTTT TTTG TTTG TTTG TTTG TTTG TTTT
51848 AAGA * 5 18/20 AAGA AAGA AAGA GCGA AAGA
55695 TCCA * 5 18/20 TCCA TCCA TCCA TCCA TCTG
64564 TAAA * 5 18/20 TAAA TAAG TAAA TAAA TAAT
72147 AGAT * 5 18/20 AGAT AGTT AGTT AGAT AGAT
72960 CCAA * 5 18/20 CCAA CCAA CCAA CCAG CCAG
74615 ACGG * 5 18/20 ACGG ATGG ACGG ATGG ACGG
84308 AATG * 10 36/40 AATG AATG AATA AATG AATG AACG AATG AATG ACTG AATA
98601 GCCA * 7 26/28 GCCA GCCA GCCA GCCA GCCA GTCC GCCA
119814 GACC * 5 19/20 GACC GACC GACC GAAC GACC
137602 CAAA * 5 19/20 CAAA CAAA CAAA CAAA CACA
141486 ATCG * 7 26/28 ATCG ATCG ATCG AACG ATCG ATTG ATCG
144552 ACAT * 5 18/20 ACAT ACAT ATAT ACAT ATAT
150048 AATA * 5 20/20 AATA AATA AATA AATA AATA
184492 CCAT * 5 18/20 CCAT CCAT CAAT CCAG CCAT
193545 GTTT * 7 26/28 GTTT ATTT GTTT GTTT GTTT GTTT GTTC
220175 TGGC * 6 22/24 TGGC TGGC TGGC TGGC TGGC TGAA
231277 ATGA * 5 18/20 ATGA ATAA ATGA ATGA ATGT
258050 CATA * 5 18/20 CATA CATA TGTA CATA CATA
261899 ATAC * 5 19/20 ATAC ATAC ATAC ATAC ATAT
264011 TATG * 10 37/40 TATG TATG TATG CATG GATG TATG TATG TATG TATG TATA
264117 TATG * 5 18/20 TATG CATG TATG TATG TATC
269017 TATG * 6 24/24 TATG TATG TATG TATG TATG TATG
277782 CATA * 5 18/20 CATA CAAG CATA CATA CATA
278054 CGCA * 5 18/20 CGCA CGCA CGCA CGCA TGCG
278668 ATAC * 5 18/20 ATAC ATAC ATAA ATAC ATAT
284078 AGTC * 6 23/24 AGTC AGTC AGTC AGTT AGTC AGTC
292443 TAAT * 5 18/20 TAAT TAAT TAAT TTAT AAAT
299749 TATG * 5 18/20 TATG TATG TATG TATA TATA
-----------------------------------------------------------------------------
Total sequence length......................... 300557
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 32
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AATA-1 AATG-1 AAGA-1 ATAC-3 ATGA-1 ATCG-1 AGAT-1 AGTC-1
ACAT-1 ACGG-1 TAAA-1 TAAT-1 TATG-4 TACA-1 TTTG-1 TGGC-1
TCCA-1 GACC-1 GTTT-1 GCCA-1 CAAA-1 CATA-2 CGCA-1 CCAA-1
CCAT-1 CCAC-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290572|gb|AE003434.1|AE003434 Drosophila melanogaster genomic scaffold 142000013386054 section 18 of 35, complete sequence
Position Repeat Coverage Repeat
17042 TGTC * 5 18/20 TGTC TGTC TGTC TGTG TGTT
18911 ATAG * 5 18/20 ATAG ATAC ATAG ATAG AAAG
30817 ACAT * 10 36/40 ACAT ACAG ACAT ACAG ACAT ACAT ACAT ACAT ATAT ATAT
52061 ATGT * 5 18/20 ATGT ATGT ATGT ATGT ACAT
55727 GTTT * 5 18/20 GTTT GTTT GTAT GTTT GTTA
55753 TTGT * 8 30/32 TTGT TTGT TTGT TTGT TTGT TTGT TCGT TTGC
57359 TCAA * 6 22/24 TCAA TCAA CCAG TCAA TCAA TCAA
63112 TGTA * 5 18/20 TGTA TGTG TGTC TGTA TGTA
64182 ATCT * 6 23/24 ATCT ATCT ACCT ATCT ATCT ATCT
72070 AAAT * 5 18/20 AAAT AAAT AAAT AAAT TAAG
73055 AACA * 5 18/20 AACA AACA ATCA ACCA AACA
73075 ACCA * 7 27/28 ACCA ACCA ACCA ACCA ACCA ACCA ACAA
92396 ATGG * 5 19/20 ATGG ATGA ATGG ATGG ATGG
95550 TGTA * 5 18/20 TGTA TGTA TGTA CATA TGTA
109796 GTTG * 5 18/20 GTTG GTTG GTTG GTGG GTGG
128024 TTTA * 5 18/20 TTTA TTTA ATCA TTTA TTTA
133899 TATG * 7 26/28 TATG TATG TATG TATG TATG TATA TATA
141561 ACAT * 5 18/20 ACAT ACAT ACAT ATAT ATAT
145111 ATGG * 6 22/24 ATGG CTGG ATGG ATGG ATGG TTGG
146698 TACA * 5 19/20 TACA TACA TACA TACA TATA
161307 AATA * 5 18/20 AATA AATA AATA AAAA AAAA
163856 GACT * 13 49/52 GACT GACT GACT GACT GACT GACT AACT GACT GACT GACT GACT GGCT GATT
190920 TTGA * 5 18/20 TTGA TTGA TTGA CGGA TTGA
208103 TATG * 5 18/20 TATG TATA TATG TATA TATG
221608 ACAT * 6 22/24 ACAT ATAT ACAT ACAT ACAT ACAA
252831 GACT * 6 23/24 GACT GACT GACT GACT GTCT GACT
278235 ACCC * 6 22/24 ACCC AACC ACCC ACCC AACC ACCC
280287 ACAT * 5 18/20 ACAT ACAT ACAT ACAA ATAT
280616 TACA * 5 19/20 TACA TACA TACA TACA TATA
288913 AAGT * 5 19/20 AAGT AAGT AAGT AAGT AAGA
293026 ATAG * 5 19/20 ATAG ATAG AGAG ATAG ATAG
-----------------------------------------------------------------------------
Total sequence length......................... 302937
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 31
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 AATA-1 AAGT-1 AACA-1 ATAG-2 ATGT-1 ATGG-2 ATCT-1
ACAT-4 ACCA-1 ACCC-1 TATG-2 TACA-2 TTTA-1 TTGA-1 TTGT-1
TGTA-2 TGTC-1 TCAA-1 GACT-2 GTTT-1 GTTG-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290549|gb|AE003433.1|AE003433 Drosophila melanogaster genomic scaffold 142000013386054 section 17 of 35, complete sequence
Position Repeat Coverage Repeat
6466 CAAA * 5 18/20 CAAA CATA CAAA CATA CAAA
6486 CATA * 5 18/20 CATA CATA CATA CATA TGTA
12140 ACTC * 5 18/20 ACTC ACTC ACTC TCTC TCTC
15838 TCGG * 5 18/20 TCGG TCGG TCGG TCGG TCAA
21493 GGCT * 5 18/20 GGCT GGCT GGCT GGCT ATCT
31826 TTCA * 6 22/24 TTCA TGCA GTCA TTCA TTCA TTCA
37468 TATG * 5 19/20 TATG TATA TATG TATG TATG
66273 CAAA * 5 18/20 CAAA CAAA CAAT CAAA CCAA
67385 GTGG * 5 18/20 GTGG GTGG TTGG GTGG TTGG
80766 TTTA * 6 24/24 TTTA TTTA TTTA TTTA TTTA TTTA
91132 TGAT * 5 18/20 TGAT AGAT TGAT GGAT TGAT
94134 ATCC * 5 18/20 ATCC AACC ATCC AACC ATCC
100895 GTCA * 6 24/24 GTCA GTCA GTCA GTCA GTCA GTCA
101121 AATG * 8 29/32 AATG ACTG AATG AATG AATG AATG AATG AGCG
101203 GACT * 5 18/20 GACT GGCT GGCT GACT GACT
113711 ATTC * 5 18/20 ATTC ATTC AATC ATTC AATC
117480 GTGA * 5 18/20 GTGA GTGA GTGA GTGG GTTA
118856 AAAG * 5 18/20 AAAG AAAA AAAG AAAA AAAG
122141 TCTA * 5 18/20 TCTA TCTC TCTA TCTC TCTA
124478 TTTA * 5 18/20 TTTA TTTA TTTT TTTT TTTA
125713 ACAT * 5 20/20 ACAT ACAT ACAT ACAT ACAT
140449 TTTA * 5 18/20 TTTA TTTA TTTA TTTT TTTT
144826 GTTT * 8 29/32 GTTT ATTT GTTT GTTT GTTT GTTT GCTT GCTT
147201 TATG * 5 18/20 TATG TATG TATG TATG TTCG
154777 TACA * 5 18/20 TACA TACA TACG TACA TATA
166155 ATTC * 5 18/20 ATTC ATCC ATCC ATTC ATTC
166176 TTCA * 11 41/44 TTCA TTCA TTCA TTCA TTCA TTCA TTCA TTCA CTCA TTCA GTCC
171429 TCGC * 6 22/24 TCGC TCGC TCGC TCGC TCGC TTTC
173593 AATC * 5 19/20 AATC AATC ACTC AATC AATC
174275 CAAA * 5 19/20 CAAA CAAA CAAA CAAA CAAC
174711 AAAT * 5 20/20 AAAT AAAT AAAT AAAT AAAT
184135 CAGC * 8 29/32 CAGC CAGC CAGC CAGC CAGC CAGG CAGC CAAG
189662 TACA * 11 41/44 TACA TACA TACA TACA TACA TACA TACA TGCG TACA TACA TATA
194692 ACCA * 5 18/20 ACCA ACCG ACCA ACCC ACCA
195531 GTAT * 5 18/20 GTAT ATAT GTAT GTAT ATAT
233578 ACCC * 5 18/20 ACCC AACC ACCC AACC ACCC
253517 GGTT * 5 18/20 GGTT GGTT GGTT GGTG GGTA
258888 TGAC * 10 36/40 TGAC TGAC TGAC TGAC TGAC TGAC TGAC TAAC TGAA TATC
260087 TATG * 7 26/28 TATG TACA TATG TATG TATG TATG TATG
271837 TATT * 7 26/28 TATT TTTT GATT TATT TATT TATT TATT
275216 ATAC * 5 18/20 ATAC ACAC ATAC ATAC ATAT
280576 ACAT * 6 23/24 ACAT ACAT GCAT ACAT ACAT ACAT
294113 TTTG * 5 18/20 TTTG TTTG TTTT TTTG TTTT
294931 AACC * 5 19/20 AACC ATCC AACC AACC AACC
295986 ATCA * 6 22/24 ATCA ATCA ATCA GTCA ATCA ATCG
-----------------------------------------------------------------------------
Total sequence length......................... 303258
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 45
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 AAAG-1 AATG-1 AATC-1 AACC-1 ATAC-1 ATTC-2 ATCA-1
ATCC-1 ACAT-2 ACTC-1 ACCA-1 ACCC-1 TATT-1 TATG-3 TACA-2
TTTA-3 TTTG-1 TTCA-2 TGAT-1 TGAC-1 TCTA-1 TCGG-1 TCGC-1
GACT-1 GTAT-1 GTTT-1 GTGA-1 GTGG-1 GTCA-1 GGTT-1 GGCT-1
CAAA-3 CATA-1 CAGC-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290523|gb|AE003432.1|AE003432 Drosophila melanogaster genomic scaffold 142000013386054 section 16 of 35, complete sequence
Position Repeat Coverage Repeat
2784 GTCT * 5 18/20 GTCT GTCT GTCT GGCT CTCT
8810 TACA * 7 26/28 TACA TACA TACG TACA TACA TACG TACA
8881 ATGT * 5 18/20 ATGT ATGT ATGT GTGT GTGT
17420 GGTG * 5 18/20 GGTG GGTG GGAG GGGG GGTG
19577 TGAC * 9 33/36 TGAC TGAC TGGC TGAC TGAC TGAC TGAC TGAC TCTC
21189 TTCA * 5 18/20 TTCA TTCA CGCA TTCA TTCA
37500 ATAC * 5 18/20 ATAC AAAC ATAC ATAC ATAT
53543 GTGA * 8 29/32 GTGA GTGT GTAA GTGA GTGA GTGA GTGA GTGT
63883 CATA * 5 18/20 CATA CATA CATA CATA CCTC
66297 TATG * 6 22/24 TATG TATG TATG TATG TATG TACC
72808 ATCT * 5 19/20 ATCT ATCT ATCC ATCT ATCT
81282 AGAT * 7 27/28 AGAT AGAT AGAT AGAT AGAT AGAT AGAA
106743 ACAG * 5 18/20 ACAG ACAG ACAG ACAC ACAT
154479 TATG * 5 18/20 TATG TATG TATG TATG TGTA
155320 GGCT * 5 18/20 GGCT GGCT GGCT GGTT GGTT
164469 TGTT * 5 18/20 TGTT TGCT TGTT TGTT TGTA
168884 CAGT * 18 65/72 CAGT TACT CAGT CAGT CAGT CAGT CAGT CAGT CAGT CAGT CAGT CAGT CAAT CAGT CACT CAGT CATT TAGG
168959 TCAG * 6 22/24 TCAG GCAC TCAG TCAG TCAG TCAG
178732 ACCA * 5 18/20 ACCA ACCA GCCA ACCA ACCG
178756 ACCA * 7 26/28 ACCA ACCG ACCA ACCA ACCG ACCA ACCA
190889 TCCA * 5 18/20 TCCA TTCC TCCA TCCA TCCA
193702 TTGA * 7 28/28 TTGA TTGA TTGA TTGA TTGA TTGA TTGA
240157 TGAC * 5 18/20 TGAC TGAC TGAC TGAC TTAT
240285 TACA * 6 22/24 TACA TATG TACA TACA TACA TACA
259840 AGTC * 6 22/24 AGTC AGTC AGTC AGTC AGCC ATTC
259868 AGTC * 11 40/44 AGTC AGTC AGTC AGTC AGTC AGTC AGTT AGTC AGTT AGTT AGTT
263613 TATT * 6 23/24 TATT TACT TATT TATT TATT TATT
273374 AACC * 8 30/32 AACC AACC AACC AACC AACC AACC AACC CAAC
277255 ATTT * 5 18/20 ATTT ACTT ATTT ATTT ATTA
284153 TAAA * 5 18/20 TAAA TAAA TAAG AAAA TAAA
300291 CATA * 5 18/20 CATA CATA CATA TATA TATA
300561 TATG * 6 23/24 TATG TATG TATG TATG TATG TGTG
313537 GGTT * 6 23/24 GGTT GGTT TGTT GGTT GGTT GGTT
314860 CCCT * 5 18/20 CCCT ACCT CCCT CCCT CCAT
-----------------------------------------------------------------------------
Total sequence length......................... 319596
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 34
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AACC-1 ATAC-1 ATTT-1 ATGT-1 ATCT-1 AGAT-1 AGTC-2 ACAG-1
ACCA-2 TAAA-1 TATT-1 TATG-3 TACA-2 TTGA-1 TTCA-1 TGAC-2
TGTT-1 TCAG-1 TCCA-1 GTGA-1 GTCT-1 GGTT-1 GGTG-1 GGCT-1
CATA-2 CAGT-1 CCCT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290491|gb|AE003431.1|AE003431 Drosophila melanogaster genomic scaffold 142000013386054 section 15 of 35, complete sequence
Position Repeat Coverage Repeat
4377 TGTC * 6 22/24 TGTC TGTC TGTC TGTC TGTC CGTT
10225 ACAT * 5 18/20 ACAT ACAT ACAT ACAT AAGT
19946 TAAT * 5 18/20 TAAT TAAT TAAT TAAT TAGC
29146 TATG * 8 30/32 TATG TATG CATG TATG TATG TATG TGTG TATG
30601 CCAC * 5 18/20 CCAC ACAC ACAC CCAC CCAC
47412 TATG * 6 22/24 TATG TATG TATG TACA TATG TATG
62301 AGGG * 5 19/20 AGGG AGGG AGGG AGGG GGGG
73442 GTGG * 5 19/20 GTGG GTGG GTGG GTGG GTGT
76694 TGGC * 5 18/20 TGGC TGCA TGGC TGGC TGGC
76971 GCCA * 5 18/20 GCCA GCCA GCCA TCCA ACCA
76991 TCCA * 5 18/20 TCCA ACCA TCCA ACCA TCCA
88201 ATAC * 5 18/20 ATAC ATAC ATAC ATAC ATGG
90457 GTCA * 6 22/24 GTCA GGCA GTCA GTCA GTTA GTCA
90481 GTTA * 5 18/20 GTTA GTCA GTTA GTCA GTTA
96534 TAAA * 6 22/24 TAAA TAAA TGAA TAAA TAAA TAAC
103028 TCTG * 5 18/20 TCTG TCTG TCCA TCTG TCTG
104495 GACT * 5 18/20 GACT GACT AATT GACT GACT
115507 CATC * 5 18/20 CATC CATC CATC CAAC CAAC
122334 GTGG * 5 18/20 GTGG GTGT GTGG GTGT GTGG
130910 ATAC * 8 30/32 ATAC ATAC ATAC ATAC ATAC ATAC GTAC ATAT
155974 GTAT * 5 18/20 GTAT GTAT GTAC GTTT GTAT
165476 TATG * 6 22/24 TATG TATG TATG TATG TTTG TGTG
185917 CCAA * 9 34/36 CCAA CAAA TCAA CCAA CCAA CCAA CCAA CCAA CCAA
188465 GCTG * 6 24/24 GCTG GCTG GCTG GCTG GCTG GCTG
198115 AACC * 5 18/20 AACC AACC AACC GACC GACC
199264 GATG * 5 18/20 GATG GTTG GATG GTTG GATG
217407 ATAC * 5 18/20 ATAC ATAC ATAC ATAT TTAC
221094 TCAA * 5 18/20 TCAA TCAA ACAA TCAA TCCA
223826 GGCT * 9 33/36 GGCT GGCT GGCT GGCT GGCT GGCT GGCT GGCT TTAT
224158 AACC * 6 22/24 AACC AACC ATCC AACC AACC ATCC
226996 TACA * 5 18/20 TACA TACA TACA TATG TACA
227397 TACA * 10 36/40 TACA TACA TACA TACA TACA TACA TACA TACA TATG TATG
229775 ATGT * 5 18/20 ATGT ATGC ATGT GTGT ATGT
249803 TATG * 5 19/20 TATG TATG TATG TATG TTTG
254212 GATA * 5 18/20 GATA GATA GATA GATT GGTA
271794 AAAT * 5 19/20 AAAT AAAT AAAA AAAT AAAT
301016 ACAT * 5 18/20 ACAT AAAT ACAT ACAT ACGT
-----------------------------------------------------------------------------
Total sequence length......................... 311408
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 37
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 AACC-2 ATAC-3 ATGT-1 AGGG-1 ACAT-2 TAAA-1 TAAT-1
TATG-4 TACA-2 TGTC-1 TGGC-1 TCAA-1 TCTG-1 TCCA-1 GATA-1
GATG-1 GACT-1 GTAT-1 GTTA-1 GTGG-2 GTCA-1 GGCT-1 GCTG-1
GCCA-1 CATC-1 CCAA-1 CCAC-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290460|gb|AE003430.1|AE003430 Drosophila melanogaster genomic scaffold 142000013386054 section 14 of 35, complete sequence
Position Repeat Coverage Repeat
521 GTGC * 5 18/20 GTGC GTGC GTGC GTGT GTGT
14133 AAAT * 5 18/20 AAAT AAAT AAAT ATAT AGAT
25176 ATAC * 5 18/20 ATAC ATAC TCAC ATAC ATAC
55291 ATAC * 5 18/20 ATAC AAAC ATAC ATAC ATAT
87846 ACAG * 5 19/20 ACAG ACAG CCAG ACAG ACAG
91458 CGGT * 5 18/20 CGGT CGGT CGGT TGGT TGGT
91478 TGGT * 5 18/20 TGGT TGGT TGGT TTGT TGGA
100051 TCAG * 8 30/32 TCAG TCAG TCAG TCAG TCAG TCAG TCAG TCTC
130157 TCTG * 5 18/20 TCTG TCTG TCTG GCTG ACTG
146706 AGAC * 5 18/20 AGAC AGAG CGAC AGAC AGAC
155632 CAGC * 5 18/20 CAGC CTGC CAGC CAGC CAGT
166838 GATA * 6 24/24 GATA GATA GATA GATA GATA GATA
169453 GTGG * 6 22/24 GTGG GTGG TTGG GTGG TTGG GTGG
169477 CTGG * 5 18/20 CTGG TTGG CTGG TTGG CTGG
198973 TACA * 5 18/20 TACA TACA CACA TACA CACA
200626 TACA * 6 23/24 TACA TACA TACA TACA TACA TATA
200996 AAAT * 5 18/20 AAAT AAAT AAAT AAAT AATA
210154 GACG * 7 26/28 GACG GACG GACG GACG GACG GACA GACA
230363 ATAC * 7 27/28 ATAC ATAC GTAC ATAC ATAC ATAC ATAC
234452 TATG * 5 18/20 TATG TATG TATG TAAG TAGG
237823 ATGT * 5 18/20 ATGT ATGT ATGT ACGG ATGT
245436 TATG * 5 18/20 TATG TATG TATA TATG TAGG
291435 CAGC * 7 27/28 CAGC CAGC CAGC CAGC CAGC CAGC CAGT
-----------------------------------------------------------------------------
Total sequence length......................... 294292
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 23
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-2 ATAC-3 ATGT-1 AGAC-1 ACAG-1 TATG-2 TACA-2 TGGT-1
TCAG-1 TCTG-1 GATA-1 GACG-1 GTGG-1 GTGC-1 CAGC-2 CTGG-1
CGGT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290438|gb|AE003429.1|AE003429 Drosophila melanogaster genomic scaffold 142000013386054 section 13 of 35, complete sequence
Position Repeat Coverage Repeat
1902 AATT * 5 19/20 AATT AATT AATA AATT AATT
18419 TCTA * 8 29/32 TCTA TCTA TCTA TCTT TCTA TCTA TCCA TCTG
34307 CATA * 5 18/20 CATA TGTA CATA CATA CATA
38301 CATA * 5 18/20 CATA CATA CATA TGTA CATA
47411 TACA * 5 19/20 TACA TACA TACA TACA TATA
49907 TACA * 5 18/20 TACA TATG TACA TACA TACA
60123 ACCC * 5 18/20 ACCC ACCC ACTA ACCC ACCC
77836 ATCA * 8 29/32 ATCA ATCA ATCA ATCA ATCA ATCA ATCT ATAG
78195 AATG * 5 19/20 AATG AATG AATG AATG AGTG
87291 CCGA * 5 18/20 CCGA CCAA CCGA CCAA CCGA
88985 TACA * 5 18/20 TACA CACA TACA TACA TACG
89005 TATG * 5 19/20 TATG TATG TACG TATG TATG
109017 TTAA * 5 18/20 TTAA TTAT TTAA CTAA TTAA
114798 ATTT * 5 18/20 ATTT ATTT TTTT ATAT ATTT
130057 AAAC * 6 24/24 AAAC AAAC AAAC AAAC AAAC AAAC
130267 AAAC * 5 19/20 AAAC CAAC AAAC AAAC AAAC
130479 TATG * 5 19/20 TATG TATG TATG TACG TATG
142975 ATAC * 5 18/20 ATAC ATAC ATAC ATAT ATAA
184583 GTCC * 6 22/24 GTCC GTCC GTCC GCCT GTCC GTCC
191262 TTTG * 5 18/20 TTTG TTTG TGTT TTTG TTTG
204669 CAGC * 5 19/20 CAGC CAGC CAGC CAGT CAGC
206412 ATAC * 5 18/20 ATAC ATAC ATAC ATGC ATAT
211342 GCGA * 5 18/20 GCGA GCGA GAGA GTGA GCGA
211553 TACA * 5 18/20 TACA TACA TACA TATG TACA
214106 TGGT * 5 18/20 TGGT TGGT TGGT TGGT TGTG
231289 TATG * 5 18/20 TATG TGTG TATG TATG TTTG
237095 ATAC * 5 18/20 ATAC ATAC ATAC ATAC AGAG
251239 CCAT * 5 18/20 CCAT CCAT CCAG CCAT CCAG
251261 ATCC * 5 18/20 ATCC ATCC AACC ACCC ATCC
269569 TCCA * 12 44/48 TCCA TCCA TCCA TCCA TCCA TCCA ACAA TCCA TCCA ACAA TCCA TCCA
279361 TGTT * 5 18/20 TGTT TGAT TGTT TGTT TGAT
282535 ACCA * 5 18/20 ACCA ACCA ACCC ACTA ACCA
-----------------------------------------------------------------------------
Total sequence length......................... 297405
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 32
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAC-2 AATT-1 AATG-1 ATAC-3 ATTT-1 ATCA-1 ATCC-1 ACCA-1
ACCC-1 TATG-3 TACA-4 TTAA-1 TTTG-1 TGTT-1 TGGT-1 TCTA-1
TCCA-1 GTCC-1 GCGA-1 CATA-2 CAGC-1 CCAT-1 CCGA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290425|gb|AE003428.1|AE003428 Drosophila melanogaster genomic scaffold 142000013386054 section 12 of 35, complete sequence
Position Repeat Coverage Repeat
5884 TGTA * 8 29/32 TGTA TATA TGTT TGTA TGTA TGTA TGTA TGTG
10914 CCAT * 10 36/40 CCAT CCAT CCAT CCAT CCAT CCAT CCAT CTAT TCAT TTAT
11809 GACG * 8 29/32 GACG GACG GACG AACG GACG AACG GACG GACA
13037 GTAT * 5 19/20 GTAT GTAT GTAT GTAT GTGT
30219 ACAT * 5 19/20 ACAT ACAT ACAT ACAT ACAA
75304 TTAT * 6 22/24 TTAT TTAT TTAT TTAT TTAT TTCG
143071 TATG * 5 18/20 TATG TATA TATG TATA TATG
150993 AAAT * 5 18/20 AAAT ATAT ACAT AAAT AAAT
152433 ATTC * 6 22/24 ATTC ATTC ATTC ATAC ATTT ATTC
163966 ACAG * 6 22/24 ACAG ACAA ACAG ACAG ACAG ACAA
172099 TGAC * 8 29/32 TGAC TAAC TGAC TGAC TGAC TGAC TGAC TCCC
172704 ACAT * 10 37/40 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAC ATAG
173256 ATAC * 5 18/20 ATAC ATAC ATAC ATAC ACAT
178710 CATA * 6 22/24 CATA CATA CATA TATG CATA CATA
188732 TATG * 5 18/20 TATG TATG TATG TATG TACA
189130 TATG * 5 18/20 TATG TATG TATG TATG TAGC
189191 AAAT * 5 18/20 AAAT AATT AAAT AAAT ACAT
195398 TACA * 5 18/20 TACA TACA TATG TACA TACA
196394 TACA * 5 18/20 TACA TACA TATC TACA TACA
196590 TCAG * 5 18/20 TCAG TCAG TCAG TCCG TCAA
202880 TGTT * 5 18/20 TGTT TGTT TGTT TGTT TTTG
208574 ATAC * 5 18/20 ATAC ATGC ATAC ATAC ACAC
219144 ACAT * 6 22/24 ACAT ACAT ACAT ACAT ACAT ATAC
224316 AAAT * 6 22/24 AAAT AAAT AACT AATT AAAT AAAT
231953 CAAA * 5 18/20 CAAA CAAA CAAA CAAA TAAT
238800 ACAA * 5 18/20 ACAA ACCA AAAA ACAA ACAA
245470 GGAT * 5 18/20 GGAT GGAT AGAT GGCT GGAT
253765 ATAC * 7 26/28 ATAC ATAC ATAC ATAC ATAC ATAT ATAG
257711 ATTT * 5 18/20 ATTT ATTT ATTT AGTT TTTT
262486 GAGC * 5 18/20 GAGC GAGC GAGC GAGA GAGA
279454 TATG * 5 18/20 TATG TACA TATG TATG TATG
283469 GTAT * 6 23/24 GTAT ATAT GTAT GTAT GTAT GTAT
283750 ATGT * 6 22/24 ATGT ACAT ATGT ATGT ATGT ATGT
284699 ATAC * 8 29/32 ATAC ATAC ATAC ATAC ATAC ATAC ATAC GTTT
285308 ATGT * 5 19/20 ATGT ATGT ATGT ATGA ATGT
288917 TGTA * 5 18/20 TGTA TGTA TGTG TGTA TGTG
-----------------------------------------------------------------------------
Total sequence length......................... 301465
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 36
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-3 ATAC-4 ATTT-1 ATTC-1 ATGT-2 ACAA-1 ACAT-3 ACAG-1
TATG-4 TACA-2 TTAT-1 TGAC-1 TGTA-2 TGTT-1 TCAG-1 GAGC-1
GACG-1 GTAT-2 GGAT-1 CAAA-1 CATA-1 CCAT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290398|gb|AE003427.1|AE003427 Drosophila melanogaster genomic scaffold 142000013386054 section 11 of 35, complete sequence
Position Repeat Coverage Repeat
5740 GTGC * 5 18/20 GTGC GTGC GTGC GTGT GTGT
15725 AAAT * 5 18/20 AAAT AAAT AAAT AAAT GAAA
16142 TTTA * 6 22/24 TTTA TTTA TTTA TTTA TTTT TTTT
27829 AACA * 5 18/20 AACA AACA AACA AAAA AAAA
30925 ACAA * 6 22/24 ACAA ACAA ACAA AAAA AAAA ACAA
33351 ATTT * 5 18/20 ATTT TTTT TTTT ATTT ATTT
44840 TATT * 5 18/20 TATT TATA TATT TATA TATT
56013 TTGA * 5 19/20 TTGA TTGA TTAA TTGA TTGA
64512 CATA * 5 18/20 CATA CATA CATA GATA CAAA
74866 CCAT * 6 23/24 CCAT CCAT TCAT CCAT CCAT CCAT
76822 TTTG * 5 18/20 TTTG TTTG CTTT TTTG TTTG
80695 TCAA * 6 24/24 TCAA TCAA TCAA TCAA TCAA TCAA
82694 TCTG * 5 18/20 TCTG TTTG TCTG TCTG TTTG
83655 TCTA * 11 41/44 TCTA TCTA GCTA TCTA TCAA TCTA TCTA TCTA TCTA TCTA TCTC
91545 TGTT * 5 18/20 TGTT TGTT CGAT TGTT TGTT
91570 GTTT * 10 36/40 GTTT GTCT GTTT GTTT GTTT GTTT GTTT GTTT GATG ATTT
92103 TTAA * 6 22/24 TTAA TTAA TTAA TTAA TTAA CTCA
97819 AAAG * 5 18/20 AAAG AAAG AAAG AAGG AAAA
103875 ATGT * 5 19/20 ATGT ATGT ATGT ATGT ATCT
106116 TTGT * 6 23/24 TTGT TTGT TTGT TTGT TTTT TTGT
109319 CTGA * 5 18/20 CTGA CTGA CTAA CTGA CTGG
120803 ACAT * 5 18/20 ACAT ACAT ACAT ACAT ATGT
122334 ACAT * 10 39/40 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACGT
128802 TATG * 5 18/20 TATG TATG TATG TACA TATG
129849 TATG * 5 18/20 TATG TATG TATG TATG TAGA
139280 TTCT * 6 22/24 TTCT TTCC TTCT TTCT TTCT TTCA
143990 ATCT * 5 18/20 ATCT ATAT ATCT ATAT ATCT
150053 TGTA * 5 18/20 TGTA TATA TGTA CGTA TGTA
154803 ATCA * 10 37/40 ATCA ATCA ATCA ATCA ATCA ATCA ATTA ATCA ATCA AACC
157852 CATA * 5 18/20 CATA CATA CATA TGTA CATA
158001 TTTC * 5 18/20 TTTC TTTC TTTT TTTC TTTT
158532 TATG * 5 18/20 TATG TACA TATG TATG TATG
162787 ATGA * 12 45/48 ATGA ATGA ATGA ATAA ATGA ATGA ATGA ATGA ACGA ATGA GTGA ATGA
170848 GAAA * 5 18/20 GAAA GAAA AAAA AAAA GAAA
172020 ATAA * 6 22/24 ATAA ATAA ATAC ATAA ATAA TTAA
182495 TATC * 5 18/20 TATC TATA TATC TATA TATC
190342 TATG * 5 18/20 TATG TATA TATG TATG TATA
204332 ACAT * 5 18/20 ACAT ACAT ATGT ACAT ACAT
205301 TACA * 5 19/20 TACA TACA TTCA TACA TACA
207594 ACAT * 5 18/20 ACAT ACAT ACAT ATGT ACAT
208345 TACA * 6 23/24 TACA TACA TACA TACA TGCA TACA
214535 TCTG * 5 18/20 TCTG TCTG GCTG TCTG TCTA
216684 ATCG * 6 23/24 ATCG ATCG ATCG ATCG ATCG ATCT
228459 ATGT * 11 42/44 ATGT GTGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT GTGT
232935 CAAA * 5 18/20 CAAA CAAA CACA CACA CAAA
234642 GTAT * 5 18/20 GTAT GCAT GTAC GTAT GTAT
286520 ATGT * 5 19/20 ATGT ATGT ATGT ATGT ATTT
287666 TTTA * 5 18/20 TTTA TTTA TTTA TTTG TTTG
297805 CCAA * 5 18/20 CCAA CCAA CCAA CCAC CCAC
-----------------------------------------------------------------------------
Total sequence length......................... 310909
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 49
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 AAAG-1 AACA-1 ATAA-1 ATTT-1 ATGA-1 ATGT-3 ATCA-1
ATCT-1 ATCG-1 ACAA-1 ACAT-4 TATT-1 TATG-4 TATC-1 TACA-2
TTAA-1 TTTA-2 TTTG-1 TTTC-1 TTGA-1 TTGT-1 TTCT-1 TGTA-1
TGTT-1 TCAA-1 TCTA-1 TCTG-2 GAAA-1 GTAT-1 GTTT-1 GTGC-1
CAAA-1 CATA-2 CTGA-1 CCAA-1 CCAT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290382|gb|AE003426.1|AE003426 Drosophila melanogaster genomic scaffold 142000013386054 section 10 of 35, complete sequence
Position Repeat Coverage Repeat
21176 GCCA * 7 26/28 GCCA GCCA GCCA GCCA GCCA GCCA GCTC
22487 TATC * 10 36/40 TATC TATC TATC TATC TATC TATC TATT TCTC TATA TATA
26371 GAAT * 10 36/40 GAAT AAAT GAAT GAAT GAAT GAAT GAAT GAAT GAAT GTTC
36946 ATAC * 8 29/32 ATAC ATAT GTAC ATAC ATAC ATAC ATAC ATAT
44393 TGAC * 5 18/20 TGAC TAAC TGAT TGAC TGAC
62372 CAGT * 8 29/32 CAGT CAGT CAGT CAGT CAGT CAAT CAAT CAGC
66193 TATG * 5 18/20 TATG TATG TATG TACA TATG
73059 AGTC * 9 33/36 AGTC AGTC AGTC AGTC AGTC AGTT AGTT AGTT AGTC
85713 ATCC * 5 18/20 ATCC ATCC ATGC AACC ATCC
92848 CTAT * 6 22/24 CTAT CTAT GTAT TTAT CTAT CTAT
98862 GATG * 5 18/20 GATG GATG GATG GATG GCCG
100530 CATA * 5 18/20 CATA CATA CATA TATA TATA
110439 AACA * 5 18/20 AACA AGCA AACA AACG AACA
117686 CAAA * 5 18/20 CAAA CAAA CAAA CAAA CAGC
132180 TATG * 6 23/24 TATG TATG TATG TATG TTTG TATG
140723 CATA * 5 19/20 CATA CATA CATA CACA CATA
141367 TGTA * 5 18/20 TGTA TGGA TGTA TGGA TGTA
145549 TACA * 5 18/20 TACA TACA TACA TGCA TATA
159448 ATCA * 5 19/20 ATCA ATCA GTCA ATCA ATCA
164232 TCAT * 7 26/28 TCAT TCAT TCAT TCGC TCAT TCAT TCAT
171363 TCCC * 5 18/20 TCCC TCCC TCCC CCCC CCCC
171815 TTTA * 6 22/24 TTTA TTTA TTTA TTTA TTTT TTTT
176801 AATG * 7 26/28 AATG AATG AATG AATG AATG AATG AGGG
177444 TTAT * 5 19/20 TTAT TTAT TTAT TTAT TTAG
187699 TTTG * 5 18/20 TTTG TTTG TTTG TTTC TTTC
193058 TAAT * 5 18/20 TAAT TAAT TAAC TAAT TTAT
210626 GATG * 6 23/24 GATG GTTG GATG GATG GATG GATG
211939 AAAT * 5 18/20 AAAT AAAT AAAT AAAT AATG
229622 ACTA * 5 18/20 ACTA GCTA ACTA GCTA ACTA
230926 GAAA * 6 22/24 GAAA GAAA GAAA GAAA AGAA GAAA
236230 AAAT * 5 18/20 AAAT CAAT GAAT AAAT AAAT
248324 TACA * 6 22/24 TACA TACA TACA TACA TACA TGCG
251849 CCAC * 5 18/20 CCAC CCAC CCCC CCCC CCAC
275902 TTTA * 5 18/20 TTTA TTTA TTTA TTTA TTGG
293386 CATA * 7 26/28 CATA CTCA CATA CATA CATA CATA CATA
297390 ACAT * 6 23/24 ACAT ACAT ACAT ACAT ACAT ATAT
-----------------------------------------------------------------------------
Total sequence length......................... 300193
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 36
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-2 AATG-1 AACA-1 ATAC-1 ATCA-1 ATCC-1 AGTC-1 ACAT-1
ACTA-1 TAAT-1 TATG-2 TATC-1 TACA-2 TTAT-1 TTTA-2 TTTG-1
TGAC-1 TGTA-1 TCAT-1 TCCC-1 GAAA-1 GAAT-1 GATG-2 GCCA-1
CAAA-1 CATA-3 CAGT-1 CTAT-1 CCAC-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290341|gb|AE003425.1|AE003425 Drosophila melanogaster genomic scaffold 142000013386054 section 9 of 35, complete sequence
Position Repeat Coverage Repeat
10333 ATGT * 5 18/20 ATGT ATGT ATGT ATGA ATAT
22276 GATC * 5 19/20 GATC GATC GATC GATT GATC
42849 AGTT * 5 19/20 AGTT AGTT AGTT ATTT AGTT
62905 TATG * 5 18/20 TATG TATG TATG TAAG TATT
68607 ATTT * 6 22/24 ATTT ATTT ATAT TTTT ATTT ATTT
95733 TATG * 5 18/20 TATG TATG TATG TATG AAGG
111320 CTGT * 5 19/20 CTGT CCGT CTGT CTGT CTGT
112963 TACA * 5 19/20 TACA TACA TACA TACA TACT
116286 TTTG * 5 19/20 TTTG TTTG TTTG TTTG TTTT
116313 CTGT * 6 23/24 CTGT CTGT CTGT CTGT CGGT CTGT
122884 TATG * 5 19/20 TATG TATG TATG TATG TATT
125795 TAAC * 6 24/24 TAAC TAAC TAAC TAAC TAAC TAAC
141347 AAGC * 5 18/20 AAGC AAGC AAGC CAGC CAGC
159451 GGTC * 5 18/20 GGTC GGTC GGTC GGTC GGGA
163072 TACA * 5 18/20 TACA TACA TACA TACG TACG
194338 GTGA * 5 18/20 GTGA GGGA GTGA GAGA GTGA
198753 TCCA * 6 23/24 TCCA TCCA TCCA TCCA TCCA TCCC
225100 GTCA * 5 18/20 GTCA GCCA GTCA TTCA GTCA
228785 ACAT * 6 22/24 ACAT ACAT ACAT ACAT CCAT ACTT
-----------------------------------------------------------------------------
Total sequence length......................... 300205
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAGC-1 ATTT-1 ATGT-1 AGTT-1 ACAT-1 TAAC-1 TATG-3 TACA-2
TTTG-1 TCCA-1 GATC-1 GTGA-1 GTCA-1 GGTC-1 CTGT-2
----------------------------------------------------------------------------
Genomic sequence...
gi|7290316|gb|AE003424.1|AE003424 Drosophila melanogaster genomic scaffold 142000013386054 section 8 of 35, complete sequence
Position Repeat Coverage Repeat
8857 AGTG * 5 20/20 AGTG AGTG AGTG AGTG AGTG
37674 AAAT * 5 18/20 AAAT GAAT AAAT AAAT AAAA
78589 GACA * 6 22/24 GACA GACA GACA CACA GATA GACA
100545 CCCA * 5 18/20 CCCA CCCA CCCA CACA CACA
105305 ACGG * 5 18/20 ACGG TCGG ACGG ACGG ACGT
105506 AAAT * 5 19/20 AAAT AAAT AAAT AAAT AACT
110109 TTCA * 5 18/20 TTCA GCCA TTCA TTCA TTCA
139749 TTGG * 8 29/32 TTGG TTGG TTGG TTGG TTGG TTAG ATGG TTAG
145720 GACA * 6 23/24 GACA GACA GACA GACA GACA GGCA
150966 TGTA * 5 18/20 TGTA TATA TGTA TGTA TGTG
155342 TTGT * 6 22/24 TTGT TTAT TTGT TTGT TGGT TTGT
155374 TTGT * 8 30/32 TTGT TTGT TTGT TTAT TTGT TTGT TTGA TTGT
159478 GACA * 10 36/40 GACA GACA GACA AACA GACA GATA GACA GACA GGCA GGCA
162521 ATGT * 11 42/44 ATGT ATGT ATTT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ACGT
170434 TGAC * 8 29/32 TGAC TAAC TGAC TGAC TGAC TGAC TGAC TGCG
191311 TTTA * 5 18/20 TTTA CTTA TTTA TTTA TTTT
195788 GTCA * 16 58/64 GTCA GTCA GTCA GTCA GTCA GTCA GTCA GTCA GTCA GTCA ACTA GTCA GTCA GTCA GTCA CATA
197048 AAAC * 5 18/20 AAAC AAAC AGGC AAAC AAAC
198392 TCTA * 9 33/36 TCTA TCTT TCTA TCTA TCTA TCTA TCTA TCTT TCAA
198896 GCCC * 5 18/20 GCCC GCCT GCCC GCCT GCCC
202144 GACA * 8 29/32 GACA GACA GACA GACA GACA CACA CACA CACA
231072 ACAA * 5 18/20 ACAA ACAA ACAA ACAA AAAC
272919 TCAT * 6 22/24 TCAT TCAT TCAT TCGT TCAT TCCT
287032 ACCG * 5 18/20 ACCG ACCG ACCG ACCG CCCA
-----------------------------------------------------------------------------
Total sequence length......................... 289090
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 24
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-2 AAAC-1 ATGT-1 AGTG-1 ACAA-1 ACGG-1 ACCG-1 TTTA-1
TTGT-2 TTGG-1 TTCA-1 TGAC-1 TGTA-1 TCAT-1 TCTA-1 GACA-4
GTCA-1 GCCC-1 CCCA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290252|gb|AE003423.1|AE003423 Drosophila melanogaster genomic scaffold 142000013386054 section 7 of 35, complete sequence
Position Repeat Coverage Repeat
30131 TTTC * 5 18/20 TTTC TTTC TTAC ATTC TTTC
34539 TGCA * 5 18/20 TGCA TTGA TGCA TGCA TGCA
40110 GAGC * 5 18/20 GAGC GAAC GAGC GAGT GAGC
41639 TCAG * 5 19/20 TCAG TCAG TCAG TCAG TCAA
56540 AAAT * 5 19/20 AAAT AAAT ATAT AAAT AAAT
58062 TACA * 7 26/28 TACA AACA TACA TACA TACA TAAA TACA
102545 GTCC * 13 48/52 GTCC GCCC GTCC GTCC GTCC GTCT GTCC GTCC GTCC GTCC GTCC GTCC GTAT
155789 TCGC * 5 19/20 TCGC TAGC TCGC TCGC TCGC
169980 AAAC * 6 22/24 AAAC AAAC AAAC AAAC AAAC AACA
170104 AAAC * 5 18/20 AAAC AAAC AAAA AAAC AAAG
188390 GCTC * 10 36/40 GCTC GCTC GCTC GCTC GCTC GCTC ACTC TCTC TCTC TCTC
202839 GTTT * 5 19/20 GTTT GTTT GTTT GTTG GTTT
211519 TGTA * 11 40/44 TGTA TATA TGTA TGTA TGTA TGCA TGTA TGCA TGTA TGTA TGTG
212585 TATG * 5 19/20 TATG TATG TATG TATG TATA
216717 GAGT * 5 18/20 GAGT GAGT GAGT GAGA GAGA
219686 GCTC * 6 22/24 GCTC GCTC GCTC GCCC GCCC GCTC
220825 AGGC * 5 18/20 AGGC AGGC AGGC AGGC AAGG
221713 TTGT * 5 18/20 TTGT TTGT TTGT TTGT TTTC
222043 TACA * 5 18/20 TACA TATG TACA TACA TACA
223613 GACG * 6 22/24 GACG GACG GACG GACA GACG GACA
227427 ATGT * 5 18/20 ATGT ATGT ATGT ATGT GTGC
235055 TACA * 5 19/20 TACA TACA TACA TGCA TACA
236618 ACAT * 6 22/24 ACAT ATGT ACAT ACAT ACAT ACAT
236797 GGAG * 5 18/20 GGAG TGAA GGAG GGAG GGAG
237846 ATAC * 6 22/24 ATAC CAAC ATAC ATAC ATAC ATAC
241540 TATG * 6 22/24 TATG TATG TATG TATG TATG TTCG
252334 TATG * 5 18/20 TATG TATG TACA TATG TATG
257259 TGGA * 5 19/20 TGGA TGGA TGGA TGGA TGGG
259545 TACA * 6 22/24 TACA TACA TACA TATG TACA TACA
265600 TGGT * 8 29/32 TGGT TGGT GGGT TGGT TGGT TGGT TTGT TTGT
267923 TATG * 8 29/32 TATG TACA TATG TATG TATG TATG TATG TAAG
268538 TACA * 6 22/24 TACA TACA TATG TACA TACA TACA
271643 CTGG * 9 33/36 CTGG CTGG CTGG CTGG CTGG TTGG GTGG CCGG CTGG
-----------------------------------------------------------------------------
Total sequence length......................... 291976
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 33
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 AAAC-2 ATAC-1 ATGT-1 AGGC-1 ACAT-1 TATG-4 TACA-5
TTTC-1 TTGT-1 TGTA-1 TGGA-1 TGGT-1 TGCA-1 TCAG-1 TCGC-1
GAGT-1 GAGC-1 GACG-1 GTTT-1 GTCC-1 GGAG-1 GCTC-2 CTGG-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290202|gb|AE003422.1|AE003422 Drosophila melanogaster genomic scaffold 142000013386054 section 6 of 35, complete sequence
Position Repeat Coverage Repeat
9778 GATA * 15 55/60 GATA GATA GATA GATA TATA GATA AATA GATA GATA TATA GATA AATA GATA GATA TATA
22594 TTAT * 5 19/20 TTAT TTAT TTAT TTAT TTAC
27435 ACTA * 6 22/24 ACTA ACTA ACTA ACTA ACTG ACTG
27460 CTGA * 5 19/20 CTGA CTGA CTGA CTGA CTGG
37728 CTGA * 5 18/20 CTGA CTGA CTGA CTGC CTAA
150989 AGCC * 6 22/24 AGCC GGCC AGCC AGCC AGCC AGCG
176406 GTGC * 6 22/24 GTGC GTGC GTGC GTGT GTGT GTGC
183621 TATG * 5 18/20 TATG TATG AATG TTTG TATG
204104 GACA * 5 18/20 GACA GGCA GACA GACG GACA
216824 ATAC * 5 18/20 ATAC ATAC ATAC CTAC ACAC
220327 GAAC * 6 22/24 GAAC GAAC GAGC GAAC GAAA GAAC
222564 CGAG * 5 19/20 CGAG CGTG CGAG CGAG CGAG
224507 GCTC * 5 20/20 GCTC GCTC GCTC GCTC GCTC
239926 AAGA * 6 22/24 AAGA AAGA AAGA AAGA AAGA AACG
265849 TGTA * 6 22/24 TGTA TGTA TGTA TCCA TGTA TGTA
268436 AACA * 5 19/20 AACA AGCA AACA AACA AACA
269867 TGAT * 6 22/24 TGAT TGAT TGAT TGAT TGAC CGAT
276111 CAAT * 5 18/20 CAAT CAAT CAAT TAAT TAAT
-----------------------------------------------------------------------------
Total sequence length......................... 300739
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAGA-1 AACA-1 ATAC-1 AGCC-1 ACTA-1 TATG-1 TTAT-1 TGAT-1
TGTA-1 GAAC-1 GATA-1 GACA-1 GTGC-1 GCTC-1 CAAT-1 CTGA-2
CGAG-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290163|gb|AE003421.1|AE003421 Drosophila melanogaster genomic scaffold 142000013386054 section 5 of 35, complete sequence
Position Repeat Coverage Repeat
43537 GCAG * 7 27/28 GCAG GCAG GCAG GCAG GCAG GCAG GCAC
52435 ATTA * 5 19/20 ATTA ATGA ATTA ATTA ATTA
55221 CCAG * 8 29/32 CCAG CCAG CCAG CCAG CCAG TCAG TCAG TCAG
72206 CGAC * 5 19/20 CGAC CGAC CGAC CGAC CGAG
72903 GTGC * 5 18/20 GTGC GTGC GTGT GTGT GTGC
73270 CCAT * 5 18/20 CCAT CCAT CCAT CCAT CCCA
75049 CCAC * 5 18/20 CCAC CCAG CCAC CCAG CCAC
85496 ATGA * 5 18/20 ATGA ATGG ATGA ATGA ATGG
102960 TGCG * 5 18/20 TGCG TGCG TGCG TGCG TATG
103693 GGCT * 6 22/24 GGCT GGCT GGCT GGCT GGCT GGTG
105609 TGCA * 5 20/20 TGCA TGCA TGCA TGCA TGCA
125133 CAGA * 5 18/20 CAGA CACA CAGA CCGA CAGA
125647 GTCT * 5 18/20 GTCT GTCT ACCT GTCT GTCT
129075 GTGG * 5 19/20 GTGG GTGG GTGG GTAG GTGG
129457 GTAT * 7 26/28 GTAT GTAA GTAT GTAT GTAT GTAG GTAT
132229 GCCA * 6 24/24 GCCA GCCA GCCA GCCA GCCA GCCA
143075 TGCC * 5 19/20 TGCC TGCC TGCC TGCC TGGC
163828 TATG * 5 19/20 TATG TATG CATG TATG TATG
164191 GGAA * 10 36/40 GGAA GGCA GGAA GGAA GGAA GGAA GGAA GGAA GGAA GTTG
165367 TCCG * 5 20/20 TCCG TCCG TCCG TCCG TCCG
166371 TATG * 6 22/24 TATG TATG TATG TATG TATG CAAG
171655 ACAT * 5 20/20 ACAT ACAT ACAT ACAT ACAT
173443 AAGA * 5 19/20 AAGA AAGA AAGA ATGA AAGA
175207 ACTC * 5 18/20 ACTC ACTC ACTC ACAC ACCC
175907 CGAC * 5 19/20 CGAC CGAC CGAA CGAC CGAC
178499 CAAA * 10 36/40 CAAA CAAA CAAA CAAA CAAA CAAA CAAA CCAA CCAA ACAA
190901 GTCA * 5 18/20 GTCA GTCA GCCA GTCA GTCC
193068 AAAT * 5 18/20 AAAT AAAT AAAT AAAC AAGT
195348 ATAC * 6 22/24 ATAC ATAC ATAC ATAC ATAC TCAC
206565 ATAC * 5 18/20 ATAC ATAC ATAA ATAC ATTC
210906 TGGT * 20 72/80 TGGT TGGT TAGT TGGT TGGT TGGT TGGT TGGT TGGT TGGT TGGT TGGT TGGT TAAT TGGT TGGT TGGT TGGT TTGA GGAG
212129 ACAT * 5 18/20 ACAT ATGT ACAT ACAT ACAT
212207 GACG * 8 30/32 GACG GACA GACG GACG GACG GACG GACG GACT
229753 CCGA * 7 26/28 CCGA CCGA CCGA CCGA CCGA CCAA CCGG
244590 GTGG * 5 18/20 GTGG ATGG GTGG ATGG GTGG
246809 ATGG * 5 18/20 ATGG ATGG CTGG ATGG GTGG
249415 CTGG * 5 19/20 CTGG CTGG GTGG CTGG CTGG
254993 TCAG * 6 24/24 TCAG TCAG TCAG TCAG TCAG TCAG
255253 CACC * 5 18/20 CACC CACA CACC CACC CACA
259834 TATG * 5 20/20 TATG TATG TATG TATG TATG
264576 ACTG * 6 22/24 ACTG ACTG ACTG ACTG AGTG AATG
280243 CAGC * 5 18/20 CAGC CATC CAGC CACC CAGC
282492 AAAT * 5 18/20 AAAT ATAT AAAT AAAT ATAT
288431 CTGA * 5 18/20 CTGA ATGA CTGC CTGA CTGA
288460 TGAC * 6 22/24 TGAC TGAA TGAC TGGC TGAC TGAC
294840 GTAT * 5 18/20 GTAT GTAT GTAT GTAT GAGT
-----------------------------------------------------------------------------
Total sequence length......................... 296497
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 46
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-2 AAGA-1 ATAC-2 ATTA-1 ATGA-1 ATGG-1 ACAT-2 ACTG-1
ACTC-1 TATG-3 TGAC-1 TGGT-1 TGCA-1 TGCG-1 TGCC-1 TCAG-1
TCCG-1 GACG-1 GTAT-2 GTGG-2 GTGC-1 GTCA-1 GTCT-1 GGAA-1
GGCT-1 GCAG-1 GCCA-1 CAAA-1 CAGA-1 CAGC-1 CACC-1 CTGA-1
CTGG-1 CGAC-2 CCAT-1 CCAG-1 CCAC-1 CCGA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290119|gb|AE003420.1|AE003420 Drosophila melanogaster genomic scaffold 142000013386054 section 4 of 35, complete sequence
Position Repeat Coverage Repeat
3761 CCGA * 6 22/24 CCGA CTGG CCGA CCGA CCGA CCGA
15805 ACGG * 5 18/20 ACGG ACGG ACGG TTGG ACGG
40862 CACT * 6 23/24 CACT CACT TACT CACT CACT CACT
64869 ATGT * 5 18/20 ATGT ATAT ATGT ATGT ATAT
77391 ACAG * 6 22/24 ACAG ACAG GCAG ACAG ACAG ACAA
78550 CATA * 6 22/24 CATA CATA CATA TATA CATA TATA
95922 TTGT * 5 18/20 TTGT TTGT TTGT TTAT TTGC
97803 TTCA * 7 26/28 TTCA TTCA TTCA TTCA TTCA TTTA TTCG
98117 TGAC * 8 29/32 TGAC TGGC TGAC TGAC TGAC TGAC TGGC TGGC
99741 ATGT * 5 18/20 ATGT ATGT ATGT ACAT ATGT
181540 GACC * 5 18/20 GACC CACC GACC GACC GAGC
188571 ACAT * 5 18/20 ACAT ACAT ATGT ACAT ACAT
224388 TATG * 6 22/24 TATG TATG TACA TATG TATG TATG
234784 CTTA * 5 19/20 CTTA CTTA CTTA CTTA ATTA
261563 CACT * 5 18/20 CACT CACT CACT CACT CAGC
268044 TGTC * 5 19/20 TGTC TGTC TGTC TGTC TGAC
270027 TAAC * 13 47/52 TAAC TAGC TAAC TAAC TAAT TAAC TAAC TAAC TAAC TAAC TAAC TAAC GTGC
272494 GACT * 5 18/20 GACT GACT AACT GACT AACT
-----------------------------------------------------------------------------
Total sequence length......................... 302855
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
ATGT-2 ACAT-1 ACAG-1 ACGG-1 TAAC-1 TATG-1 TTGT-1 TTCA-1
TGAC-1 TGTC-1 GACT-1 GACC-1 CATA-1 CACT-2 CTTA-1 CCGA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290091|gb|AE003419.1|AE003419 Drosophila melanogaster genomic scaffold 142000013386054 section 3 of 35, complete sequence
Position Repeat Coverage Repeat
50581 TATG * 5 18/20 TATG TATG TATG GATG TACG
109614 TCAA * 6 22/24 TCAA TCAA GCAG TCAA TCAA TCAA
113055 GTAT * 5 19/20 GTAT GTAT GTAT GTAT GTAC
134571 TGTT * 5 18/20 TGTT TGTT TATT TGTT TATT
148669 ATGT * 5 18/20 ATGT ATCT ATGT ATGT ATAT
158643 AACA * 5 18/20 AACA ATCA AACA AACT AACA
170535 TTTA * 6 22/24 TTTA TTTA TTTA TTTA TTTT TTTC
174055 TAAA * 5 18/20 TAAA CAAA TAAA TAAA TACA
192701 TATG * 6 22/24 TATG TATT TATG TATG CATG TATG
195145 ACAA * 6 23/24 ACAA ACAA ACAA ACAA ACAA ACAC
199133 CGGA * 5 18/20 CGGA CGGA CGGA CGGA CTGC
206593 ACAT * 5 18/20 ACAT ACAT ATGT ACAT ACAT
210314 TTAT * 5 19/20 TTAT TTAT TTAT TTAT TCAT
234900 TTGG * 5 18/20 TTGG TTGG CTGG TTGG TTTG
257988 CAGA * 8 30/32 CAGA CAGA CAGA CAGA CAGA CAGG CAGA CAGT
267530 CTGT * 5 19/20 CTGT CTGT CCGT CTGT CTGT
276318 TTAT * 5 18/20 TTAT TTCT TTAT TTAT TTTT
277616 TTAA * 5 18/20 TTAA TTAA TTAA ATAA CTAA
-----------------------------------------------------------------------------
Total sequence length......................... 299275
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AACA-1 ATGT-1 ACAA-1 ACAT-1 TAAA-1 TATG-2 TTAA-1 TTAT-2
TTTA-1 TTGG-1 TGTT-1 TCAA-1 GTAT-1 CAGA-1 CTGT-1 CGGA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290053|gb|AE003418.1|AE003418 Drosophila melanogaster genomic scaffold 142000013386054 section 2 of 35, complete sequence
Position Repeat Coverage Repeat
7892 CAAA * 5 18/20 CAAA CAAA AACA CAAA CAAA
9616 AATC * 5 18/20 AATC AATC AATG TATC AATC
20073 AGTC * 5 18/20 AGTC AGTC ATTT AGTC AGTC
21552 AAGT * 5 18/20 AAGT AAGT CAGA AAGT AAGT
38257 AAAT * 5 18/20 AAAT AAAT AAAT ACAC AAAT
86173 GTAT * 6 22/24 GTAT GCAT GTAT GTAT GTAT GTTT
113393 GTCC * 5 18/20 GTCC GTTC GTCT GTCC GTCC
131677 ATAC * 8 31/32 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAT
134221 TATT * 5 18/20 TATT TATA TATT TATT TAAT
150883 GTAT * 6 22/24 GTAT GTAT GTAT GTAT GTAC GTGT
157154 TCCA * 5 19/20 TCCA TCCA TCCA TCCA TCCC
179030 ACTG * 5 18/20 ACTG ATTG ACTG ACTG GCTG
187291 TTTG * 5 19/20 TTTG TTTG TTTG CTTG TTTG
201435 CAAA * 6 22/24 CAAA CAAA CAAA CAAA CGAG CAAA
214409 TACA * 5 18/20 TACA TACA TACA TATA TATA
225925 TGTT * 5 18/20 TGTT TGCT TGTT TGTT TGTC
232725 TTCC * 5 18/20 TTCC ATCC TTCC TTCC TACC
253245 AGAA * 5 18/20 AGAA AGAA TGAA AGAA AGGA
-----------------------------------------------------------------------------
Total sequence length......................... 299970
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 AATC-1 AAGT-1 ATAC-1 AGAA-1 AGTC-1 ACTG-1 TATT-1
TACA-1 TTTG-1 TTCC-1 TGTT-1 TCCA-1 GTAT-2 GTCC-1 CAAA-2
----------------------------------------------------------------------------
Genomic sequence...
gi|7290018|gb|AE003417.1|AE003417 Drosophila melanogaster genomic scaffold 142000013386054 section 1 of 35, complete sequence
Position Repeat Coverage Repeat
53242 TTTG * 5 18/20 TTTG TTTG TGTT TTTG TTTG
58496 TATT * 5 18/20 TATT TTTT TTTT TATT TATT
69542 CTGA * 5 18/20 CTGA TTGA CTGA CTGA CTGT
85153 GACT * 5 18/20 GACT GACT ACCT GACT GACT
127397 GATC * 5 19/20 GATC GATC GATC GATC GATG
134569 TTAT * 5 18/20 TTAT TGAT TTAT TTAT TTAA
184013 ATAC * 5 18/20 ATAC ATAC AGGC ATAC ATAC
200565 AAAC * 5 18/20 AAAC AAAC AAAC AAAC AGAG
227106 ATAC * 7 26/28 ATAC ATAC ATAC ATAC ATTC ATAC ATAG
278663 TCTA * 5 18/20 TCTA TCTC TCTC TCTA TCTA
306621 TTGG * 5 18/20 TTGG GTGG TTGG GTGG TTGG
-----------------------------------------------------------------------------
Total sequence length......................... 314661
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 11
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAC-1 ATAC-2 TATT-1 TTAT-1 TTTG-1 TTGG-1 TCTA-1 GATC-1
GACT-1 CTGA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7289092|gb|AE002987.1|AE002987 Drosophila melanogaster genomic scaffold 142000013385379, complete sequence
Position Repeat Coverage Repeat
28374 ATAC * 5 18/20 ATAC ATAC ATAC ATAC ATTA
58787 AAAT * 6 22/24 AAAT AAAT AAAT AAGT AAAT AAAA
69389 TGTA * 5 20/20 TGTA TGTA TGTA TGTA TGTA
-----------------------------------------------------------------------------
Total sequence length......................... 71090
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 3
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 ATAC-1 TGTA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7289791|gb|AE002991.1|AE002991 Drosophila melanogaster genomic scaffold 142000013385979, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------
Total sequence length......................... 7017
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------
Genomic sequence...
gi|7316106|gb|AE002593.1|AE002593 Drosophila melanogaster genomic scaffold 142000013386053, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------
Total sequence length......................... 0
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------
Genomic sequence...
gi|7293636|gb|AE003513.1|AE003513 Drosophila melanogaster genomic scaffold 142000013386053 section 30 of 30, complete sequence
Position Repeat Coverage Repeat
16002 GATC * 6 22/24 GATC AATC GATC GATC GATC GACC
16368 ACAT * 5 18/20 ACAT ACAT ACAT ATGT ACAT
46192 ACAT * 5 18/20 ACAT ACAT ACAT ACAT ATGT
53127 GCCA * 7 26/28 GCCA GCCA GCCA GCCA GCCA GCCA TCCG
54602 CTGT * 5 18/20 CTGT ATGT CTGT CTGT CTGC
54636 CTCA * 11 40/44 CTCA CTCA CTTA CTCA CTCA CTCA CTCA CTCA CTTA CTCG CTCG
63090 AAAT * 6 23/24 AAAT AAAT AAAT AAAT AAAT AAAA
72904 ATAC * 8 29/32 ATAC ATAC ATAC ATAC ATAC ATAC ATTT ATAT
74002 TACA * 5 18/20 TACA TACA TATA TAGA TACA
75517 CATA * 5 18/20 CATA CATA CATA TGTA CATA
75981 AGGG * 5 18/20 AGGG AGGG AGGG GGGG GGGG
95323 ACAT * 5 18/20 ACAT ACAT ACAT GCAT ACAC
96795 AAAT * 5 18/20 AAAT AAAT ATAT AAAT ATAT
117499 ATGT * 7 28/28 ATGT ATGT ATGT ATGT ATGT ATGT ATGT
118166 TACA * 6 22/24 TACA TACA TACA TACA TACA TATG
121933 CTAT * 7 27/28 CTAT CTAT CTAT CTAT CTAT CTAT CTAC
129297 TATG * 5 18/20 TATG TATG TATG TATT AATG
141599 GACA * 6 22/24 GACA GACG GATA GACA GACA GACA
142177 TTGT * 5 18/20 TTGT TTGT TTTT TTTT TTGT
146201 TATG * 5 19/20 TATG TATG TATG TATG TGTG
150879 GAAA * 5 18/20 GAAA GTAA GAAA GTAA GAAA
152727 ATAC * 5 18/20 ATAC ATAC ATAC ATAT ATAA
156081 TAAA * 6 22/24 TAAA TAAA TAAT TAAA TAAA TAAT
161874 GCGA * 5 18/20 GCGA GCGA GCGA GTGA GTGA
169640 TTTA * 5 18/20 TTTA TTTA TGTT TTTA TTTA
180474 AGTT * 8 30/32 AGTT GGTA AGTT AGTT AGTT AGTT AGTT AGTT
197958 TATG * 5 18/20 TATG TATG TAAA TATG TATG
-----------------------------------------------------------------------------
Total sequence length......................... 207355
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 27
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-2 ATAC-2 ATGT-1 AGTT-1 AGGG-1 ACAT-3 TAAA-1 TATG-3
TACA-2 TTTA-1 TTGT-1 GAAA-1 GATC-1 GACA-1 GCGA-1 GCCA-1
CATA-1 CTAT-1 CTGT-1 CTCA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7293579|gb|AE003512.1|AE003512 Drosophila melanogaster genomic scaffold 142000013386053 section 29 of 30, complete sequence
Position Repeat Coverage Repeat
303 TGAC * 5 18/20 TGAC AGAC TGAC TAAC TGAC
325 ACTG * 5 18/20 ACTG ACTC ACTG ACTA ACTG
349 ACTG * 8 30/32 ACTG ACTA ACTG ACTG ACTG ACTG ACTG ACTT
10864 CCAT * 11 40/44 CCAT CCAT CCAT CCAT CCAT CCAT CCAA GCGT CCAT CCAT TCAT
18416 CACC * 5 18/20 CACC CACC CACC AACC AACC
27209 ACTG * 5 18/20 ACTG ACTA ACTG ACTG AATG
27230 CTGA * 5 18/20 CTGA CTGT CTGA CTGA CTGG
29316 GCTG * 5 18/20 GCTG GCTG GCTG GTTG GTTG
38560 AGTC * 6 22/24 AGTC AGTC AGTC AGTC AGTC AGCT
63319 CTGG * 8 30/32 CTGG ATGG TTGG CTGG CTGG CTGG CTGG CTGG
69190 CATA * 7 27/28 CATA CATA CATA CATA CATA CATA CATG
101627 TGTT * 6 23/24 TGTT TGTT TGTT TGTT TGTT TGTG
127566 TACA * 6 23/24 TACA TTCA TACA TACA TACA TACA
139476 ATCC * 9 34/36 ATCC ATCC ATCC ATCC ATCC ATCC ATCC ATCT ATCT
155147 GATG * 11 40/44 GATG GATG GACG GATG GATG GACG GATG GATG GATG GATG GTCG
156683 ATAG * 5 19/20 ATAG ATAG ATAG ATAG ATAT
162197 GTAT * 5 18/20 GTAT GTAT GTAT GTAT ATAC
173026 TTTG * 5 18/20 TTTG CTTG CTTG TTTG TTTG
173101 TTAT * 5 18/20 TTAT TTAT TTAT TTAT GTTT
198605 TAAA * 5 18/20 TAAA TAAG TAAA TAAA TGAA
207863 TACA * 5 18/20 TACA TACG TGCA TACA TACA
209825 TACA * 5 18/20 TACA TACA TACA TACA TATG
211796 CATA * 6 22/24 CATA CATA CATA TGTA CATA CATA
212002 TACA * 5 19/20 TACA TACA TACA TACG TACA
218809 TATG * 5 18/20 TATG TATG TATG TATT TAGG
233241 TATG * 5 19/20 TATG TATA TATG TATG TATG
238799 ATAC * 6 22/24 ATAC ACTC ATAC ATAC ATAC ATAC
242681 ACAT * 6 23/24 ACAT GCAT ACAT ACAT ACAT ACAT
249012 AATT * 6 22/24 AATT CATT AAAT AATT AATT AATT
249351 AAAT * 5 18/20 AAAT AAAT AAAT TAAT AACT
253603 AGCC * 6 22/24 AGCC AGCC AACC AGCC AGCG AGCC
278089 TATG * 5 19/20 TATG TATG TATG TATG TATA
289610 GGCT * 9 33/36 GGCT GGCT GGCT GGCC GGCT GGCT GGCT GGCC GGGT
291806 TGTA * 6 22/24 TGTA TGTA TGTA TGTA CATA TGTA
-----------------------------------------------------------------------------
Total sequence length......................... 301656
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 34
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 AATT-1 ATAG-1 ATAC-1 ATCC-1 AGTC-1 AGCC-1 ACAT-1
ACTG-3 TAAA-1 TATG-3 TACA-4 TTAT-1 TTTG-1 TGAC-1 TGTA-1
TGTT-1 GATG-1 GTAT-1 GGCT-1 GCTG-1 CATA-2 CACC-1 CTGA-1
CTGG-1 CCAT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7293536|gb|AE003511.1|AE003511 Drosophila melanogaster genomic scaffold 142000013386053 section 28 of 30, complete sequence
Position Repeat Coverage Repeat
842 CCAC * 5 18/20 CCAC CCAG CCAC CCAG CCAC
12695 ATAA * 6 22/24 ATAA ATAA ATAA ATAA ATAA ATGT
31061 CATT * 5 19/20 CATT CACT CATT CATT CATT
71568 ATAC * 6 22/24 ATAC ATAC ATAC ATAT ATAC ATAT
73944 TGGT * 5 18/20 TGGT CGGT CGGT TGGT TGGT
88444 CAAA * 5 18/20 CAAA CAAA AACA CAAA CAAA
95428 TACA * 5 18/20 TACA TACA TACA TATG TACA
98122 TTTA * 5 18/20 TTTA TTTA TTTA TTTT TTTT
104949 ATAC * 5 18/20 ATAC ATAT GTAC ATAC ATAC
105612 TATG * 5 18/20 TATG TATG TATG TGTA TATG
128194 CCAC * 5 18/20 CCAC CAAC CCAC CCAC CTAC
141317 CCAA * 7 26/28 CCAA CCAA CCAA CCAA CCAA CCAA GCAC
146018 GGTG * 6 22/24 GGTG GGTG GTTG GGTG GTTG GGTG
154297 TTTA * 5 18/20 TTTA TATA TTTA TTTA TTAA
172185 ATAG * 5 18/20 ATAG ATAG ATAT ATAG ATAT
175081 GGTC * 8 30/32 GGTC TGTC GGTC GGTC GGTC GGTC GGTC GGTG
233593 ATGG * 15 54/60 ATGG ATGG ATGG ATGG ATGG ATGG ATGG GTGG ATGG ATGG ATGG ATGG TTGG ATGG GATA
234618 CTGT * 5 18/20 CTGT CTGT CTGT CTGC CTGG
236551 TATG * 6 22/24 TATG TACA TATG TATG TATG TATG
237699 CCAG * 5 18/20 CCAG CCAG CCAG CCAG TCAT
238400 AAAT * 5 18/20 AAAT AAAT AAAT AAAT AGAA
238860 TTGA * 5 18/20 TTGA TTGT ATGA TTGA TTGA
246083 TATT * 5 20/20 TATT TATT TATT TATT TATT
250375 TTGG * 5 19/20 TTGG TTGG TTGG TTGG TCGG
252531 TACA * 5 19/20 TACA TACA TACG TACA TACA
269858 ATAC * 5 19/20 ATAC ATAC ATAC ATAC ATAT
273955 TATG * 7 26/28 TATG TATG TATG TATG TATG TATG TGTT
284891 ATGT * 8 30/32 ATGT ACAT ATGT ATGT ATGT ATGT ATGT ATGT
291379 AAAT * 9 34/36 AAAT AGAT AAAT AAAT AAAT AAAT AGAT AAAT AAAT
293630 GTTT * 10 36/40 GTTT GTTT GTTT GTTT GTTT GCTT GTTT GTTT GCTT CTTG
301493 CATA * 5 18/20 CATA TGTA CATA CATA CATA
305742 TGTA * 11 41/44 TGTA TGTA TGTA CGTA TGAA TGTA TGTA CGTA TGTA TGTA TGTA
306981 ATAC * 5 18/20 ATAC ATAC ATAC ATAC GTAT
310957 ACAA * 5 18/20 ACAA AAAA ACAA ACAA AAAA
311610 GAAC * 7 27/28 GAAC GAAC GAAC GAAC GAAC GAAC GAAA
319628 ACCC * 5 18/20 ACCC AACC ACCC AACC ACCC
324115 ATGG * 5 20/20 ATGG ATGG ATGG ATGG ATGG
328617 GCCT * 11 42/44 GCCT GACT GCCT GCCT GCCT GCCT GCCT GCCT GCCT GCCT GCCC
333704 ACCA * 5 19/20 ACCA ACCA ACCA AACA ACCA
335923 CCAA * 10 36/40 CCAA CCAA CCAA CCAA CCAA CCAA CCAA CCAT CCAG GCAT
338004 AGGC * 5 19/20 AGGC AGGC AGGC GGGC AGGC
341021 TACA * 5 18/20 TACA TACA TACA TACG GACA
341143 CCAG * 7 26/28 CCAG CCAG CCAG CCAG CTAG CCAG CCGG
341398 CGGA * 5 18/20 CGGA TGGA CGGA TGGA CGGA
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Total sequence length......................... 343711
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 44
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Frequency of Tetra-Nucleotide Repeats
AAAT-2 ATAA-1 ATAG-1 ATAC-4 ATGT-1 ATGG-2 AGGC-1 ACAA-1
ACCA-1 ACCC-1 TATT-1 TATG-3 TACA-3 TTTA-2 TTGA-1 TTGG-1
TGTA-1 TGGT-1 GAAC-1 GTTT-1 GGTG-1 GGTC-1 GCCT-1 CAAA-1
CATA-1 CATT-1 CTGT-1 CGGA-1 CCAA-2 CCAG-2 CCAC-2
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Genomic sequence...
gi|7293504|gb|AE003510.1|AE003510 Drosophila melanogaster genomic scaffold 142000013386053 section 27 of 30, complete sequence