Tetra-Nucleotide Repeats in Genomic Sequences
Tetra-Nucleotide Repeats in
Drosophila melanogaster Chromosome-X Genomic Scaffolds
Genomic sequence...
gi|7289277|gb|AE002611.1|AE002611 Drosophila melanogaster genomic scaffold 142000013385548, complete sequence
Position Repeat Coverage Repeat
1952 ATAC * 5 19/20 ATAC ATAC ATAC ATAC ATAT
2422 ATAC * 5 18/20 ATAC ATAC AAAC ATAC ATAT
10917 TATG * 5 18/20 TATG TATG TATG TATT TATA
24744 TGGC * 5 18/20 TGGC TGGC TGGC TGGG TGGT
29425 TCAA * 5 18/20 TCAA TCAA ACAG TCAA TCAA
35039 TGTA * 6 22/24 TGTA TGTA TGTA TGTG TGTA TATA
51148 ATCA * 5 19/20 ATCA ATCA ATCA ATCA ATCG
55831 ACAA * 5 18/20 ACAA GCAA ACAA ACAA ACAC
60466 AGAA * 5 18/20 AGAA AGAA AGAA GGAA AGGA
63050 GCCA * 5 18/20 GCCA GGCA GCCA GGCA GCCA
67792 CAGT * 5 18/20 CAGT CAGT CGGT CTGT CAGT
72714 TTGA * 5 18/20 TTGA TTCC TTGA TTGA TTGA
100032 TGTC * 6 23/24 TGTC TGTC TGTC TGTC TGTA TGTC
100833 GGAT * 7 26/28 GGAT GGTT GGAT GGAT GGAT GGAT AGAT
123993 CAGA * 5 18/20 CAGA CACA CACA CAGA CAGA
142264 TACA * 5 19/20 TACA TACA TGCA TACA TACA
148052 GGTG * 5 18/20 GGTG TGTG GGTG TGTG GGTG
176235 TATG * 5 18/20 TATG TGTG TATG TATG TATA
188251 GGAT * 5 18/20 GGAT GGAG GGAT GGAT GGTT
201939 ACGC * 5 18/20 ACGC ACGC ACGC ACAC ACAC
215904 TATG * 5 18/20 TATG TACA TATG TATG TATG
-----------------------------------------------------------------------------
Total sequence length......................... 216949
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 21
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
ATAC-2 ATCA-1 AGAA-1 ACAA-1 ACGC-1 TATG-3 TACA-1 TTGA-1
TGTA-1 TGTC-1 TGGC-1 TCAA-1 GGAT-2 GGTG-1 GCCA-1 CAGA-1
CAGT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7316095|gb|AE002620.1|AE002620 Drosophila melanogaster genomic scaffold 142000013386037, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------
Total sequence length......................... 0
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------
Genomic sequence...
gi|7295611|gb|AE003572.1|AE003572 Drosophila melanogaster genomic scaffold 142000013386037 section 5 of 5, complete sequence
Position Repeat Coverage Repeat
11367 CATC * 10 37/40 CATC CATC CATC CATC CATC CATC CATC TATC TATC TATC
12173 TTCC * 5 18/20 TTCC TTCC TTCC CTCC TGCC
15297 ATAC * 10 37/40 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAT ATGG
15410 TACT * 5 18/20 TACT TTCT TACT TACT TTCT
16433 CAAA * 6 22/24 CAAA CAAG CAAA CAAA CAAA CAAG
31412 ACAT * 5 18/20 ACAT ACAT ATAT ACAT ATAT
32656 TACA * 5 19/20 TACA TACA TACA TACA TAGA
38975 GGAT * 5 18/20 GGAT GGAT GGAT GAAT CGAT
43470 TAAA * 6 22/24 TAAA TAAA TAAA GAAA TAAA AAAA
47813 ACGG * 5 18/20 ACGG ACGG ACGG ACGG ACAC
47833 GGAC * 5 18/20 GGAC GGAC GGAC AGAA GGAC
55988 GCGA * 7 26/28 GCGA ACGA GCGA GCGA GCGA GCGA TCGA
67070 AAAG * 5 18/20 AAAG ATAG AAAG AAAG AAAT
-----------------------------------------------------------------------------
Total sequence length......................... 79498
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 13
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAG-1 ATAC-1 ACAT-1 ACGG-1 TAAA-1 TACA-1 TACT-1 TTCC-1
GGAT-1 GGAC-1 GCGA-1 CAAA-1 CATC-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7295580|gb|AE003571.1|AE003571 Drosophila melanogaster genomic scaffold 142000013386037 section 4 of 5, complete sequence
Position Repeat Coverage Repeat
8165 GATA * 5 18/20 GATA GATA GATA GATA GAAT
78765 GGAT * 5 19/20 GGAT GGAT GGAT GGAT AGAT
87053 GTGG * 6 22/24 GTGG GTGG GTGG GCGA GTGG GTGG
94716 ACGG * 5 18/20 ACGG ACTG ACGG ACAG ACGG
101246 TATG * 5 18/20 TATG TATG TATG TACA TATG
126242 TATG * 5 19/20 TATG TATG TATG TATG CATG
138132 ATTG * 5 19/20 ATTG ATTG ATTG ATTG ATCG
138635 TTTA * 5 18/20 TTTA TTTG TTTA TCTA TTTA
163502 TTTG * 5 18/20 TTTG TTTG TTTG TTTT TTTT
165261 TACA * 5 18/20 TACA TACG TACA CACA TACA
167777 TAAA * 6 22/24 TAAA TAAA TAAA TAAA AAAA AAAA
178088 TATG * 5 19/20 TATG TATG TATG TATG TATT
249005 ATAA * 5 18/20 ATAA CTAA CTAA ATAA ATAA
249666 GGCA * 5 18/20 GGCA GCCA GGCA GCCA GGCA
276527 GTGA * 8 29/32 GTGA GTGA GTGA GTGA GTAA GTGA GTGT GTGC
280092 GTCA * 5 18/20 GTCA GTCA TTCA GCCA GTCA
285335 CTGA * 5 18/20 CTGA TTGA CTGA CCGA CTGA
287916 GCTG * 5 18/20 GCTG GCTG GCTG GCTG GCAT
294269 GACT * 5 18/20 GACT GTCT GACT GTCT GACT
295960 ATCC * 5 18/20 ATCC AACC ATCC ACCC ATCC
298425 AACA * 5 19/20 AACA AACA AACA AACA GACA
-----------------------------------------------------------------------------
Total sequence length......................... 302246
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 21
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AACA-1 ATAA-1 ATTG-1 ATCC-1 ACGG-1 TAAA-1 TATG-3 TACA-1
TTTA-1 TTTG-1 GATA-1 GACT-1 GTGA-1 GTGG-1 GTCA-1 GGAT-1
GGCA-1 GCTG-1 CTGA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7295563|gb|AE003570.1|AE003570 Drosophila melanogaster genomic scaffold 142000013386037 section 3 of 5, complete sequence
Position Repeat Coverage Repeat
7180 TGAT * 5 19/20 TGAT TGAT TGAT TGAT GGAT
13397 GTTG * 6 22/24 GTTG GTCG GTTG GTTG GGTG GTTG
15117 AGTC * 5 18/20 AGTC ATTC ACTC AGTC AGTC
61128 CGAA * 5 18/20 CGAA TGAG CGAA CGAA CGAA
92395 TCAG * 11 41/44 TCAG TCAG TCAG TCAA TCAA TCAG TCAG TCAG TCAG TCAG TCAC
94574 AAGC * 5 18/20 AAGC AAGT TAGC AAGC AAGC
112360 TTTC * 5 19/20 TTTC CTTC TTTC TTTC TTTC
115060 TGTC * 5 19/20 TGTC CGTC TGTC TGTC TGTC
116950 TGTT * 6 22/24 TGTT TGTA TGTT TGTT TGTT TTTT
121017 CATA * 5 18/20 CATA CATA TATA CATA TATA
139094 AAAT * 6 22/24 AAAT AAAT AAAT AAAT AAAT ATAA
152750 TTTG * 5 19/20 TTTG TTTG TCTG TTTG TTTG
161772 AAAT * 6 22/24 AAAT AAAT AAAT AAAT ATAT ATAT
163439 AATA * 5 19/20 AATA AATA AATA AATA AATC
189550 GGTG * 5 18/20 GGTG GATG GGTG GTTG GGTG
193058 ATTT * 5 18/20 ATTT ATTT ATTT ATTT ACTC
213115 GGTT * 5 18/20 GGTT GGGT GGTT GGGT GGTT
213135 GGGT * 5 18/20 GGGT GGTT GGGT GGTT GGGT
217937 AGCC * 6 22/24 AGCC AGCC AGTC AGTC AGCC AGCC
219037 ACGG * 8 29/32 ACGG ACGG ACGG ACGG ACGG ACGG AGCG ACGT
235290 CATA * 5 18/20 CATA TGTA CATA CATA CATA
265744 AACA * 5 18/20 AACA AACA AACA AATA GACA
265774 CAAA * 5 18/20 CAAA CAGA CAAA CATA CAAA
275621 TAAA * 5 19/20 TAAA TAAA TAAA CAAA TAAA
277441 ATTA * 5 18/20 ATTA TTTA ATTA ATTA AATA
289179 AATG * 5 18/20 AATG AATG AACG GATG AATG
-----------------------------------------------------------------------------
Total sequence length......................... 299012
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 26
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-2 AATA-1 AATG-1 AAGC-1 AACA-1 ATTA-1 ATTT-1 AGTC-1
AGCC-1 ACGG-1 TAAA-1 TTTG-1 TTTC-1 TGAT-1 TGTT-1 TGTC-1
TCAG-1 GTTG-1 GGTT-1 GGTG-1 GGGT-1 CAAA-1 CATA-2 CGAA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7295529|gb|AE003569.1|AE003569 Drosophila melanogaster genomic scaffold 142000013386037 section 2 of 5, complete sequence
Position Repeat Coverage Repeat
14746 CGGA * 5 18/20 CGGA CGGA CGGA CAGA TGGA
14768 GACG * 5 18/20 GACG GACA GACG GACT GACG
17773 TCAA * 6 22/24 TCAA TCAA TCAA TCAA CCAA TCAC
26260 TGGG * 5 18/20 TGGG TGGG TGTT TGGG TGGG
28368 AGCT * 6 23/24 AGCT AGCT AGTT AGCT AGCT AGCT
88495 ATAC * 5 18/20 ATAC ATAC ATAC ATAT GTAC
194981 AAAT * 5 18/20 AAAT AAAC ACAT AAAT AAAT
214876 AGAC * 8 29/32 AGAC AGAC AGAC AGAC AGAC AGAT AGAC GGTC
217974 ATAC * 5 18/20 ATAC ATAC ATAT ATAC ATAT
225948 TTTG * 5 19/20 TTTG TTTG TTTG TTTG GTTG
228252 CATC * 5 18/20 CATC CATC CATC CATC TAAC
245594 TACA * 6 23/24 TACA TACA TACA TACA TACA TGCA
257366 GTCC * 5 19/20 GTCC GTCC GTCC GTCT GTCC
290305 CACG * 5 18/20 CACG CACG CACA CACA CACG
-----------------------------------------------------------------------------
Total sequence length......................... 292406
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 ATAC-2 AGAC-1 AGCT-1 TACA-1 TTTG-1 TGGG-1 TCAA-1
GACG-1 GTCC-1 CATC-1 CACG-1 CGGA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7295493|gb|AE003568.1|AE003568 Drosophila melanogaster genomic scaffold 142000013386037 section 1 of 5, complete sequence
Position Repeat Coverage Repeat
15873 TACA * 5 18/20 TACA TACA TACA TATG TACA
25906 GGTG * 5 18/20 GGTG GGCG GATG GGTG GGTG
61801 TAAA * 5 18/20 TAAA TAAA TAAA TAAA ATAA
70986 CAGA * 5 19/20 CAGA CAGA CAGA CTGA CAGA
103157 TTAA * 5 18/20 TTAA TCAA TTAA TTTA TTAA
107149 TATG * 11 40/44 TATG TATG TACG TATG TATG TATG TATG TATG TATG TGCG CATG
109442 ATGT * 5 18/20 ATGT GTAT ATGT ATGT ATGT
121204 ACGG * 7 26/28 ACGG ACAG ACGG ACGG ACTG ACGG ACGG
125183 ATAC * 5 18/20 ATAC ATAT ACAC ATAC ATAC
135931 TTAT * 5 19/20 TTAT TTAT TCAT TTAT TTAT
189134 AGGC * 6 22/24 AGGC AGGC AGGC GGGC AGGC AGGA
191167 CGAT * 6 22/24 CGAT CGAT CAAT CGAT CGAT CAAT
253619 ATGT * 7 26/28 ATGT ATGT ATGT ATGT ATGT ATGT GTAT
257922 TTAA * 6 22/24 TTAA CTAA TTAA TTAA TTAA TTTA
258387 CAAA * 8 30/32 CAAA CAAA CAAA CAAA CAAG CAGA CAAA CAAA
287002 TGTT * 5 18/20 TGTT TGTT TGTT CGTT CGTT
287022 CGTT * 5 18/20 CGTT CGTT GGTT CGTT TGTT
-----------------------------------------------------------------------------
Total sequence length......................... 292926
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 17
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
ATAC-1 ATGT-2 AGGC-1 ACGG-1 TAAA-1 TATG-1 TACA-1 TTAA-2
TTAT-1 TGTT-1 GGTG-1 CAAA-1 CAGA-1 CGAT-1 CGTT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7316092|gb|AE002629.1|AE002629 Drosophila melanogaster genomic scaffold 142000013386033, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------
Total sequence length......................... 0
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------
Genomic sequence...
gi|7295629|gb|AE003574.1|AE003574 Drosophila melanogaster genomic scaffold 142000013386033 section 2 of 2, complete sequence
Position Repeat Coverage Repeat
13179 GAAT * 8 29/32 GAAT GAAT GAAT TAAT GAAT GAAT GAAT GATG
30866 TGTC * 5 18/20 TGTC AGTC TGTC TGTC TGCC
35081 CTGA * 5 18/20 CTGA ATGA CTGG CTGA CTGA
35725 TAGA * 5 18/20 TAGA TAGA TATA TAGA AAGA
43164 ATAC * 8 29/32 ATAC ATAC ATAC ATAC ATAC ATAC ATAG GTCC
88740 ATGT * 5 18/20 ATGT ACGT ATGT ATGT ATGG
125110 TATG * 6 22/24 TATG TATG TATG TATG TTTA TATG
160818 ATAC * 5 19/20 ATAC ATAC ATAC ATAC ATAT
186954 TGAC * 8 30/32 TGAC TGAC TGAC TGAC TGAT TGAC TGCC TGAC
193064 TGTA * 5 18/20 TGTA CATA TGTA TGTA TGTA
203752 CATA * 5 19/20 CATA CATA CATA CATA TATA
213538 GACA * 5 18/20 GACA GTCG GACA GACA GACA
215198 CTGT * 5 18/20 CTGT CTGT CTGT TTGT CCGT
228455 TATT * 5 18/20 TATT TATT TATT CTTT TATT
-----------------------------------------------------------------------------
Total sequence length......................... 274456
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
ATAC-2 ATGT-1 TATT-1 TATG-1 TAGA-1 TGAC-1 TGTA-1 TGTC-1
GAAT-1 GACA-1 CATA-1 CTGA-1 CTGT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7295620|gb|AE003573.1|AE003573 Drosophila melanogaster genomic scaffold 142000013386033 section 1 of 2, complete sequence
Position Repeat Coverage Repeat
33315 CCAT * 5 18/20 CCAT CCAT CCAT CCAT CTAC
43670 TTAA * 5 18/20 TTAA TTAA TAAA TTAC TTAA
48301 TTTA * 5 18/20 TTTA TTTA TTTA TTTA TTAT
48328 TTAT * 6 22/24 TTAT TTAT TTAT TTAT TTAT TATT
98933 GTCC * 5 18/20 GTCC GTCC GTCT ATCC GTCC
110953 TACA * 6 22/24 TACA TACA TACA TACA TACA TGTA
113047 TACA * 5 18/20 TACA TACA TACA TACA TAGT
113459 TGTC * 5 18/20 TGTC CGTC TGTC TGTC CGTC
125892 TGTA * 5 18/20 TGTA TGTA TGTA TGTA CATA
128459 ATTT * 6 22/24 ATTT ATTT ATTT ATTG ATTT ACTT
147506 AATA * 5 20/20 AATA AATA AATA AATA AATA
166069 TCAA * 5 18/20 TCAA TCAA TCAA TCAG GCAA
204728 TTAC * 5 18/20 TTAC ATAC ATAC TTAC TTAC
210612 GTCA * 10 36/40 GTCA GTCA GTCA GTCA GTCA GTCA GTCG GTCA TTCA GGCG
228440 TAAA * 5 18/20 TAAA TAAA TAAA TAAA TTTA
-----------------------------------------------------------------------------
Total sequence length......................... 262131
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 15
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AATA-1 ATTT-1 TAAA-1 TACA-2 TTAA-1 TTAT-1 TTAC-1 TTTA-1
TGTA-1 TGTC-1 TCAA-1 GTCA-1 GTCC-1 CCAT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7288912|gb|AE002813.1|AE002813 Drosophila melanogaster genomic scaffold 142000013385227, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------
Total sequence length......................... 2620
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------
Genomic sequence...
gi|7289135|gb|AE002822.1|AE002822 Drosophila melanogaster genomic scaffold 142000013385417, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------
Total sequence length......................... 1638
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------
Genomic sequence...
gi|7289301|gb|AE002567.1|AE002567 Drosophila melanogaster genomic scaffold 142000013385554, complete sequence
Position Repeat Coverage Repeat
53704 TGTC * 5 18/20 TGTC CGTC TGTC CGTC TGTC
-----------------------------------------------------------------------------
Total sequence length......................... 84373
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
TGTC-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7289214|gb|AE002930.1|AE002930 Drosophila melanogaster genomic scaffold 142000013385493, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------
Total sequence length......................... 1282
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------
Genomic sequence...
gi|7289226|gb|AE003341.1|AE003341 Drosophila melanogaster genomic scaffold 142000013385503, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------
Total sequence length......................... 1242
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------
Genomic sequence...
gi|7316107|gb|AE002566.1|AE002566 Drosophila melanogaster genomic scaffold 142000013386054, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------
Total sequence length......................... 0
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------
Genomic sequence...
gi|7291169|gb|AE003451.1|AE003451 Drosophila melanogaster genomic scaffold 142000013386054 section 35 of 35, complete sequence
Position Repeat Coverage Repeat
4972 ATAA * 5 18/20 ATAA AAAA ATAT ATAA ATAA
19020 CAAC * 5 18/20 CAAC CAAC CAAG TAAC CAAC
30283 CGAA * 5 18/20 CGAA CGAA CGAA CGAA CAAC
30303 CGAC * 5 18/20 CGAC CGAC CGAC CGAC CGTT
33204 GACC * 5 18/20 GACC GACC GACC GACC GCAC
53860 AACG * 5 19/20 AACG AACG AACC AACG AACG
83348 TTAT * 5 18/20 TTAT TTGT TTAT TTAT TTAA
101799 TATG * 9 33/36 TATG TATG TATG TTTG TATG TATG TATG CATG CATG
108544 GTAT * 5 19/20 GTAT GTAT GTAT GTAT GTAG
108663 CTTC * 5 19/20 CTTC CTTC CTTT CTTC CTTC
109252 TAAA * 5 18/20 TAAA TAAA TAAA TAAA TAGT
141971 AGTC * 5 18/20 AGTC AGTC AGTC ATTT AGTC
157287 ACAT * 6 22/24 ACAT ACAT ATAT ACAT ACAT AAAT
158662 ATAA * 5 18/20 ATAA ATAA AAAA ATAT ATAA
160092 AATC * 5 18/20 AATC AATC AATC AATC TAAC
165021 ATAG * 6 23/24 ATAG ATGG ATAG ATAG ATAG ATAG
181807 ACCG * 8 29/32 ACCG ACCA ACCG ACCG GCCG ACCG ACCG AACG
186689 AGAC * 8 29/32 AGAC AGAG AGAC AAAC AGAC AGAC AGAC AGAA
187550 TATG * 6 22/24 TATG TATG TATG TACA TATG TATG
189629 AGTT * 5 19/20 AGTT AGTT AGTT AGTC AGTT
190621 GGTG * 5 18/20 GGTG TGTG TGTG GGTG GGTG
203035 ACAG * 5 19/20 ACAG ACAG ACAG GCAG ACAG
207117 CCAT * 5 20/20 CCAT CCAT CCAT CCAT CCAT
-----------------------------------------------------------------------------
Total sequence length......................... 220623
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 23
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AATC-1 AACG-1 ATAA-2 ATAG-1 AGAC-1 AGTT-1 AGTC-1 ACAT-1
ACAG-1 ACCG-1 TAAA-1 TATG-2 TTAT-1 GACC-1 GTAT-1 GGTG-1
CAAC-1 CTTC-1 CGAA-1 CGAC-1 CCAT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7291133|gb|AE003450.1|AE003450 Drosophila melanogaster genomic scaffold 142000013386054 section 34 of 35, complete sequence
Position Repeat Coverage Repeat
34916 CACT * 5 18/20 CACT CACT CACT CACT CATC
75915 AGTC * 8 29/32 AGTC AGCC AGTC AGTC AGTC AGTC AGTG AGTT
95510 TGGA * 5 18/20 TGGA TGGG TGGA TGGG TGGA
96499 AAAT * 5 18/20 AAAT AAAC ATAT AAAT AAAT
97758 ATAC * 6 22/24 ATAC ATAC ATAC ATAC CTAT ATAC
98526 AGCG * 5 18/20 AGCG AGCG AGCG AGAG AGAG
123968 TCTA * 5 18/20 TCTA TCTA TCTA TCTA TCCG
152854 TTAT * 8 29/32 TTAT TTAT TTAT TTAT TTAT TTAT TTGT TTTG
157183 CATC * 5 18/20 CATC CATC CATC CGAC CATC
164696 TTGG * 5 18/20 TTGG TTGC TTGG TTGG TTGA
186447 TGTT * 5 19/20 TGTT TATT TGTT TGTT TGTT
199211 ACAA * 5 18/20 ACAA ACAA ATTA ACAA ACAA
206468 CATA * 5 18/20 CATA TATA CATA CATA TATA
217103 TGTA * 5 18/20 TGTA TGTA TGTA TGTA TATG
273800 TGGT * 8 29/32 TGGT TGGT TGGT TGGT TGGT TGGC TGGG TGGA
283339 GATC * 5 19/20 GATC GATC GATC GATC GGTC
-----------------------------------------------------------------------------
Total sequence length......................... 300732
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 ATAC-1 AGTC-1 AGCG-1 ACAA-1 TTAT-1 TTGG-1 TGTA-1
TGTT-1 TGGA-1 TGGT-1 TCTA-1 GATC-1 CATA-1 CATC-1 CACT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7291099|gb|AE003449.1|AE003449 Drosophila melanogaster genomic scaffold 142000013386054 section 33 of 35, complete sequence
Position Repeat Coverage Repeat
14636 TGGT * 5 18/20 TGGT GGGT GGGT TGGT TGGT
18093 TTAG * 6 22/24 TTAG TTAG TTAG TTAG TCAG TCAG
48361 GCTT * 5 18/20 GCTT GCTT GCTG GCTT CCTT
60577 TATT * 6 22/24 TATT TGTT TATT TATT TGTT TATT
60950 TGAC * 13 48/52 TGAC TGAA TGAC TGAC TGAC TGAC TGAC TGAC TGAC TAAC TGAA TGAC TTAC
69163 TTTG * 5 19/20 TTTG TTTG TTTT TTTG TTTG
115824 AGTC * 8 30/32 AGTC AGTC AGTC AGTC AGTC AGTC AGTC ATCC
124140 TATG * 5 18/20 TATG TATG CATG TAAG TATG
144447 TACA * 5 19/20 TACA TACA TACA TACA CACA
159624 AACA * 5 18/20 AACA AATA AACC AACA AACA
160340 ATAC * 5 18/20 ATAC ATAT ATAC ATAT ATAC
162640 TTGT * 8 30/32 TTGT TTGT TTGT TTGT TTGT TTGT TTGC TTTT
170629 ATAC * 5 18/20 ATAC ATAC ATAC ATAT ATAG
178673 ACAG * 10 36/40 ACAG ACAG ACAG ACAG ACAG ACAG ACAG ATAG AGAT ACGG
179624 TGTC * 5 18/20 TGTC TGTC TGCC TGTC CGTC
183093 TTGT * 5 18/20 TTGT TTGT TTGT TTGT TCTT
222937 ACAT * 5 18/20 ACAT ACAT ACAT ACAT ATGT
227799 TCTG * 5 19/20 TCTG TCTG TTTG TCTG TCTG
234424 GTTG * 5 18/20 GTTG GTTG GTTG GTTG ATTT
259040 TGTT * 6 24/24 TGTT TGTT TGTT TGTT TGTT TGTT
262870 TTTG * 6 23/24 TTTG TTTG TTTG TTTG TTTG CTTG
268589 TACA * 5 19/20 TACA TACA TACA TACA TAAA
269236 TCTA * 5 18/20 TCTA TGTA TCTA ACTA TCTA
277740 TTCT * 6 22/24 TTCT GTCT TTCT TTCT TTCT TTTT
-----------------------------------------------------------------------------
Total sequence length......................... 299786
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 24
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AACA-1 ATAC-2 AGTC-1 ACAT-1 ACAG-1 TATT-1 TATG-1 TACA-2
TTAG-1 TTTG-2 TTGT-2 TTCT-1 TGAC-1 TGTT-1 TGTC-1 TGGT-1
TCTA-1 TCTG-1 GTTG-1 GCTT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7291077|gb|AE003448.1|AE003448 Drosophila melanogaster genomic scaffold 142000013386054 section 32 of 35, complete sequence
Position Repeat Coverage Repeat
2103 CAGC * 5 18/20 CAGC TAGC CAGT CAGC CAGC
9717 CAAC * 7 27/28 CAAC CAAC CAAC CAAC CAAC GAAC CAAC
29822 CGCA * 6 22/24 CGCA CGCA TGCA CGAA CGCA CGCA
45395 TTGT * 6 23/24 TTGT TTGT TTGT TTGT TTGT CTGT
50199 ATTT * 5 18/20 ATTT ATTT ATTT TTTT TTTT
64955 TGTA * 5 19/20 TGTA TGTA AGTA TGTA TGTA
65434 ACGG * 5 18/20 ACGG ACAG ACGG ACGG ACAG
74158 ATAA * 5 18/20 ATAA ATGA ATTA ATAA ATAA
74649 ACTG * 5 20/20 ACTG ACTG ACTG ACTG ACTG
76678 TTGG * 7 26/28 TTGG TTGT TTGC TTGG TTGG TTGG TTGG
78719 CTTT * 5 18/20 CTTT CTTT CTTT TTTC CTTT
81781 CTTT * 5 18/20 CTTT CTTT CTTT TTTT TTTT
83824 GGAG * 6 22/24 GGAG AGAG GGAG GGAG GGAG CGAG
91303 CAAA * 6 22/24 CAAA CAAA CAAA TAAA TAAA CAAA
91363 AAAC * 6 22/24 AAAC CAAC AAGC AAAC AAAC AAAC
94015 AATA * 5 18/20 AATA ATTA AATA AATA AATT
96508 GACT * 6 22/24 GACT GAGT GACT GACT GACT GGCT
102007 ATGG * 8 30/32 ATGG ATGG ATGG ATGG ATGG ATGG ATTG AGGG
106499 CCAT * 6 22/24 CCAT CCAA CTAT CCAT CCAT CCAT
106549 AACC * 5 18/20 AACC GACT AACC AACC AACC
112145 AACT * 6 22/24 AACT GACT AACT AACT AACT GACT
127070 TATC * 5 18/20 TATC TATC TATC TATA TATT
143915 TGGT * 6 22/24 TGGT TGGT TGGC TGGT TGGC TGGT
147680 ATCA * 5 18/20 ATCA ATCT ATCA ATCA ATAA
180119 ACAT * 5 18/20 ACAT ACAT ACAA ACAC ACAT
185990 GTCC * 5 18/20 GTCC GTTC GTCC GTCC GTCG
197987 GCCA * 5 18/20 GCCA CGCA GCCA GCCA GCCA
198008 CCAG * 15 56/60 CCAG CCAG CCAG CCAG CCAG CCAG CCAG CCAG CCAG CCAG CCAG CCAG TCAG CCAG ACGT
234071 AAAT * 5 19/20 AAAT AAAT AAAT AAAT AAAC
272540 TCGC * 5 19/20 TCGC TCTC TCGC TCGC TCGC
290367 CCCA * 5 18/20 CCCA ACCA CCCA ACCA CCCA
298761 ACTG * 5 18/20 ACTG ATTG ACTG ACTG CCTG
298791 TGAC * 5 18/20 TGAC TGAC TGAG TGCC TGAC
298813 ACTG * 5 19/20 ACTG ACTT ACTG ACTG ACTG
302392 TGGA * 5 19/20 TGGA TGGA TGGA TGGA TGGT
303774 CCAA * 5 19/20 CCAA CCAT CCAA CCAA CCAA
-----------------------------------------------------------------------------
Total sequence length......................... 310399
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 36
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 AAAC-1 AATA-1 AACT-1 AACC-1 ATAA-1 ATTT-1 ATGG-1
ATCA-1 ACAT-1 ACTG-3 ACGG-1 TATC-1 TTGT-1 TTGG-1 TGAC-1
TGTA-1 TGGA-1 TGGT-1 TCGC-1 GACT-1 GTCC-1 GGAG-1 GCCA-1
CAAA-1 CAAC-1 CAGC-1 CTTT-2 CGCA-1 CCAA-1 CCAT-1 CCAG-1
CCCA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7291054|gb|AE003447.1|AE003447 Drosophila melanogaster genomic scaffold 142000013386054 section 31 of 35, complete sequence
Position Repeat Coverage Repeat
441 ACTA * 5 19/20 ACTA ACTA ACTA ACTT ACTA
773 TACA * 5 18/20 TACA TACA TACA TATA TATA
67194 TCTA * 5 18/20 TCTA TCTC TCTC TCTA TCTA
69416 CTCG * 5 18/20 CTCG CTCG CTCG CTCG CTTT
71102 TCTG * 6 22/24 TCTG TTTG TCTG TCTG TCGG TCTG
86087 GGAA * 5 18/20 GGAA GAAA GGAA GGAA GGCA
87079 ACAG * 5 19/20 ACAG ACAG ACAG ACAG ACAT
94442 ACAA * 6 22/24 ACAA ACAA ACAA ACAA ACAG ACCA
102111 TATG * 5 18/20 TATG TATG TGTA TATG TATG
112872 AGCG * 5 18/20 AGCG AGCA AGCG AGCG AGAG
113897 CATA * 5 18/20 CATA CACA CATA CATA TATA
130116 TATG * 5 18/20 TATG TATG TATG TACA TATG
131008 TATG * 5 19/20 TATG CATG TATG TATG TATG
136309 TTTA * 5 18/20 TTTA TTTA TTTA TTTT TTTT
144048 ACTG * 6 22/24 ACTG ACGG ACTG ACTG ACTG AATG
144078 TGAC * 15 54/60 TGAC TCAC TGGC TGAC TGAC TGAC TGAC TGAC TGAC TGAC TGAC TGGC GGAC TGAG TGAG
157341 ATAA * 5 18/20 ATAA ATAA ATAA AAAA ATAT
165090 CTTT * 6 23/24 CTTT CTTT CTTT CTTT CTAT CTTT
166097 ACAT * 8 29/32 ACAT ACAT ACAT ACAT ACAT ACAT GCAT ATGT
172132 CCAT * 6 22/24 CCAT CCAA CCAT CCAG CCAT CCAT
192333 ATAC * 5 19/20 ATAC ATAC ATAC ATAC ATAT
216199 ACAT * 5 18/20 ACAT ACAT ACAT AAAA ACAT
293197 CTGA * 7 26/28 CTGA CTGA CTGA CTGA CTGA CTGG CTGT
-----------------------------------------------------------------------------
Total sequence length......................... 304060
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 23
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
ATAA-1 ATAC-1 AGCG-1 ACAA-1 ACAT-2 ACAG-1 ACTA-1 ACTG-1
TATG-3 TACA-1 TTTA-1 TGAC-1 TCTA-1 TCTG-1 GGAA-1 CATA-1
CTTT-1 CTGA-1 CTCG-1 CCAT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290992|gb|AE003446.1|AE003446 Drosophila melanogaster genomic scaffold 142000013386054 section 30 of 35, complete sequence
Position Repeat Coverage Repeat
12178 CATA * 5 18/20 CATA CACA TATA CATA CATA
32697 ATGG * 8 30/32 ATGG TTGG TTGG ATGG ATGG ATGG ATGG ATGG
43022 ATGT * 6 22/24 ATGT ATGT ATGT ATGT ATGT GTAT
43926 GTTG * 9 33/36 GTTG GTTT GTTG GTTG GTTG GTTG GTTG GTTG GAAG
61218 ACAT * 6 22/24 ACAT ACGT ACAT CCAT ACAT ACAT
77521 TATG * 5 18/20 TATG TATG TATG TATG TCAG
92420 TTTG * 5 18/20 TTTG TTTG TTTG TTTT TTTT
96611 GAAT * 6 22/24 GAAT GAAT GAAT AAAC GAAT GAAT
97503 CCCA * 5 18/20 CCCA ACCA CCCA ACCA CCCA
97669 TGGA * 6 22/24 TGGA TGGT TGGA TGGC TGGA TGGA
97694 GGAT * 5 18/20 GGAT GAAT GGAT GGGT GGAT
101663 GATT * 5 19/20 GATT GATT AATT GATT GATT
109140 ATAC * 6 23/24 ATAC CTAC ATAC ATAC ATAC ATAC
142644 AAAC * 6 22/24 AAAC AAAC AAAC AAAC AAAC AACT
176049 TTAT * 5 19/20 TTAT TTAT TTAT TTAT TTAC
181632 ACCC * 5 18/20 ACCC AACC ACCC ATCC ACCC
190828 AAAC * 5 18/20 AAAC AAAC AAAA AAAC AAAA
194391 TTAT * 6 22/24 TTAT TTGT TTAT TTAT TTAT TTGT
233874 TATG * 5 18/20 TATG TATG TATG TATA TACG
254623 AGAT * 5 18/20 AGAT TGAT AGAT AGAT ATAT
257330 GTAT * 5 19/20 GTAT GTAT GTAT GTGT GTAT
258862 CATA * 5 18/20 CATA AATA CATG CATA CATA
259018 TTGG * 5 18/20 TTGG ATGG TTGG ATGG TTGG
259038 ATGG * 5 18/20 ATGG ATGG ATTG GTGG ATGG
259059 TGGA * 8 30/32 TGGA TGGG TGGA TGGA TGGA TGGG TGGA TGGA
259178 ACTG * 7 26/28 ACTG ACTG ACTG CCTG ACTG ACTG AATG
293966 GACA * 9 33/36 GACA GACA CACA GACA GACA GACA GACA GTCA GGCA
302767 CCAG * 6 23/24 CCAG CCAG CCAG CCAG CCAA CCAG
-----------------------------------------------------------------------------
Total sequence length......................... 303104
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 28
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAC-2 ATAC-1 ATGT-1 ATGG-2 AGAT-1 ACAT-1 ACTG-1 ACCC-1
TATG-2 TTAT-2 TTTG-1 TTGG-1 TGGA-2 GAAT-1 GATT-1 GACA-1
GTAT-1 GTTG-1 GGAT-1 CATA-2 CCAG-1 CCCA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290970|gb|AE003445.1|AE003445 Drosophila melanogaster genomic scaffold 142000013386054 section 29 of 35, complete sequence
Position Repeat Coverage Repeat
13181 CCAT * 5 18/20 CCAT CCAG CCAT CCAG CCAT
13441 ATGA * 5 19/20 ATGA ATGA ATGG ATGA ATGA
44714 TACA * 5 18/20 TACA TACA TACA TATA TATA
45940 TTTG * 5 18/20 TTTG TTTG TTAT TTTG TTTG
78387 TGTA * 5 18/20 TGTA TGTA TGTA TATA TATA
98576 GAGC * 5 18/20 GAGC GAGC GAGC AAGC GAGA
99651 TGTA * 6 22/24 TGTA TGTA TGTG TGTA TGTA TGAA
104254 AAAT * 6 22/24 AAAT AAAT AAAT AAAA AAAT AAAA
112331 CGTG * 5 18/20 CGTG TATG CGTG CGTG CGTG
117318 TGGC * 8 29/32 TGGC TGAC TGGC TGGC TGAC TGGC TGGC TGGA
131806 TCAG * 5 18/20 TCAG TCAG TCAG TCAG TTGG
132995 AAAC * 5 20/20 AAAC AAAC AAAC AAAC AAAC
200508 TATG * 5 18/20 TATG TTTG TATG TATT TATG
207450 CTCG * 5 18/20 CTCG CTCG CTTG CTCG CTCT
207482 CTCC * 6 22/24 CTCC CTCC CTCC CTCT CTCC CTCT
216063 CCAC * 5 19/20 CCAC CCAC CCAG CCAC CCAC
228461 TGCC * 5 18/20 TGCC TCGC TGCC TGCC TGCC
264937 AGTC * 5 18/20 AGTC ATTC ATTC AGTC AGTC
265164 ACAT * 5 19/20 ACAT ACAT ACAT ACAT ACAC
274514 ACAA * 6 22/24 ACAA ACAA ACAA ACAA ACAA AGAG
277606 TTTA * 6 22/24 TTTA TTTA TTCA TGTA TTTA TTTA
287547 ATAC * 5 18/20 ATAC ATAC ATAC AAAC ATAT
290297 AAAT * 5 18/20 AAAT AAAT AAAT AAAT CAAA
291270 GGGA * 5 18/20 GGGA GGGA GGGA GGGA GGAG
293710 TATT * 5 18/20 TATT TATT TATT TATT TGTG
305335 CAAC * 5 18/20 CAAC TAAC CAAC CAAA CAAC
310959 ATAC * 7 26/28 ATAC ATAC ATAT ATAT ATAC ATAC ATAC
-----------------------------------------------------------------------------
Total sequence length......................... 313965
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 27
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-2 AAAC-1 ATAC-2 ATGA-1 AGTC-1 ACAA-1 ACAT-1 TATT-1
TATG-1 TACA-1 TTTA-1 TTTG-1 TGTA-2 TGGC-1 TGCC-1 TCAG-1
GAGC-1 GGGA-1 CAAC-1 CTCG-1 CTCC-1 CGTG-1 CCAT-1 CCAC-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290927|gb|AE003444.1|AE003444 Drosophila melanogaster genomic scaffold 142000013386054 section 28 of 35, complete sequence
Position Repeat Coverage Repeat
1450 ATAC * 8 30/32 ATAC ATGC ATAT ATAC ATAC ATAC ATAC ATAC
4709 ATAC * 5 19/20 ATAC ATAC ATAC ATAC ATAT
5973 CACG * 5 19/20 CACG CACG CACG CGCG CACG
15127 CAAA * 8 29/32 CAAA CAAA CAAA CAAA CAAA CGAA CGAA CGAA
29981 TACA * 6 22/24 TACA TACA TACA TGCA TATA TACA
35777 CTAT * 13 47/52 CTAT TTAT CTAT CTAT CTAA CTAT CTAT ATAT CTAT CTAT CTAT CTAT ATAA
38975 TCAC * 8 31/32 TCAC TCAC TCAT TCAC TCAC TCAC TCAC TCAC
78986 TGAT * 5 18/20 TGAT TGTT TGAT TGTT TGAT
95505 TATG * 5 19/20 TATG TATG TATG TATG TATA
99859 TACA * 5 18/20 TACA TACA TACA TACA TATG
103405 AATA * 5 19/20 AATA AATA AATA AAGA AATA
104538 TACA * 5 18/20 TACA TACA TACA TACA TAAT
107105 TATG * 6 22/24 TATG TATG CATG TATG TATG TGTG
107977 TCAT * 5 20/20 TCAT TCAT TCAT TCAT TCAT
126516 TATG * 6 22/24 TATG TATG TATG TCTG TATA TATG
164335 TATG * 5 18/20 TATG TATA TATG TATA TATG
167318 CAGA * 8 29/32 CAGA CAGA TAGA CAGA CAGA CAGA CAGG CAGG
202450 ACCA * 5 18/20 ACCA ACCA ACCA AGCA AGCA
208115 GTTA * 6 23/24 GTTA GTTA GTTA GTTA GTTC GTTA
209587 ATTT * 5 19/20 ATTT CTTT ATTT ATTT ATTT
214637 TTAT * 5 18/20 TTAT TTAT TTAT ATAT ATAT
222670 CTTT * 5 20/20 CTTT CTTT CTTT CTTT CTTT
230295 CTGT * 6 22/24 CTGT CTGC CTGT CTGT CTGT CTCT
257688 ACAT * 7 26/28 ACAT ACAA ACAT ACAT ACAT ACGT ACAT
260251 ACAA * 6 22/24 ACAA ACAA ACAA ACAA ACAA GCCA
290017 ATTT * 5 18/20 ATTT ATTA ATTT ATTT AGTT
293004 ATAC * 6 22/24 ATAC ATAC ATAC ATGC ATAC ATAT
-----------------------------------------------------------------------------
Total sequence length......................... 300710
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 27
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AATA-1 ATAC-3 ATTT-2 ACAA-1 ACAT-1 ACCA-1 TATG-4 TACA-3
TTAT-1 TGAT-1 TCAT-1 TCAC-1 GTTA-1 CAAA-1 CAGA-1 CACG-1
CTAT-1 CTTT-1 CTGT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290880|gb|AE003443.1|AE003443 Drosophila melanogaster genomic scaffold 142000013386054 section 27 of 35, complete sequence
Position Repeat Coverage Repeat
16778 AAAT * 5 19/20 AAAT AAAT AAAT AAAT AGAT
18375 AATT * 5 18/20 AATT AATT AATT AATT CAGT
29973 AAAT * 5 18/20 AAAT AAAT AAGT AATT AAAT
47462 ATCC * 6 22/24 ATCC AGCA ATCC ATCC ATCC ATCC
55032 CATA * 5 18/20 CATA CATA CATA CATA TATG
58708 TTTG * 5 18/20 TTTG TTTG TTTT TTTT TTTG
64921 GTCC * 5 19/20 GTCC GTCC GTCT GTCC GTCC
82448 TGTA * 6 22/24 TGTA TTTA TGTT TGTA TGTA TGTA
85228 ACAT * 6 22/24 ACAT ACAT ACAT ACAT ATAT GCAT
102427 TATG * 5 18/20 TATG TATG TACA TATG TATG
113834 TATG * 6 22/24 TATG TATG TACA TATG TATG TATG
114042 CCAA * 13 47/52 CCAA CCAA CCAA CCAA CCAA CCAA CCAA CCAA CCAA CCAG CTAC CCAA ACCA
119088 ATAA * 5 18/20 ATAA ATAA ACAA ATAA ACAA
149340 AGCC * 8 29/32 AGCC AGCC AGCC AGCC AGCC AGTT AGCC AGGC
150730 AAAT * 7 26/28 AAAT AAAT AAAT AAAT AAAT AAAA AAAC
192762 CTGT * 5 18/20 CTGT CTAT CTGT ATGT CTGT
192787 TGTC * 5 18/20 TGTC TGTC TGTC TGTT TGAC
216238 ATGT * 5 19/20 ATGT ATGT ATGT ATGT ATGA
224458 ATAC * 5 18/20 ATAC ATAC ATAC ATAT ATGC
232380 TATG * 5 18/20 TATG TATG TATG TACG TATA
237414 TACA * 5 18/20 TACA TACA TACA TATA CACA
245993 TAAA * 5 18/20 TAAA TGAA TAAA TAAA TAAC
249065 CGTT * 8 29/32 CGTT CGTT TGTT CGTT CGTT CGTT CGCT TGTT
249968 TTCA * 13 50/52 TTCA TTCA TTCA TTCA TTCA CTCA TTCA TTCA TTCA TTCA TTCA TTCA TTCT
255000 CATA * 6 23/24 CATA CACA CATA CATA CATA CATA
259016 ATAC * 9 35/36 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAA
264412 AATA * 8 29/32 AATA AATA AATA AATA AATA AATA AATC AAAG
268410 TGGC * 5 18/20 TGGC TGGC TGGC TGGT TGGT
283920 TATG * 5 18/20 TATG TATG TATG TACA TATG
300733 TATG * 5 19/20 TATG TATG TATG TATG TGTG
301744 TGTA * 5 18/20 TGTA TGTA CATA TGTA TGTA
301997 TACA * 5 18/20 TACA TATG TACA TACA TACA
-----------------------------------------------------------------------------
Total sequence length......................... 302357
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 32
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-3 AATA-1 AATT-1 ATAA-1 ATAC-2 ATGT-1 ATCC-1 AGCC-1
ACAT-1 TAAA-1 TATG-5 TACA-2 TTTG-1 TTCA-1 TGTA-2 TGTC-1
TGGC-1 GTCC-1 CATA-2 CTGT-1 CGTT-1 CCAA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290831|gb|AE003442.1|AE003442 Drosophila melanogaster genomic scaffold 142000013386054 section 26 of 35, complete sequence
Position Repeat Coverage Repeat
5300 ATTT * 9 33/36 ATTT AAAT ATTT ATTT ATTT ATTT ATTT ATTT ATTG
27819 ACAA * 5 18/20 ACAA GCAA GCAA ACAA ACAA
29349 ACAA * 7 26/28 ACAA GCAA ACAA ACAA ATAA ACAA ACAA
37887 AATT * 5 18/20 AATT AACT AATT AATT GATT
38260 CCAA * 6 22/24 CCAA CCAA CCAA CCAA CTAA CTAA
47254 ATAC * 7 26/28 ATAC ATAC ATAC ATAC ATAC ATAG ATAT
48089 TATG * 5 18/20 TATG TACA TATG TATG TATG
57040 TATG * 10 36/40 TATG TATG TATG TATG TATG TATG TATG TATG AAAC TATA
57361 GTGG * 5 18/20 GTGG TTGG GTGG TTGG GTGG
104822 CAAA * 5 18/20 CAAA CAAA CAAA CAAA AAAC
131104 GGTC * 6 22/24 GGTC GGTC GGTC GGTC GGTT GGTT
141475 ACAG * 5 18/20 ACAG ACAG ACAG ATAG ACAC
160036 ATTA * 5 18/20 ATTA ATTA ATTG GTTA ATTA
160331 TATG * 8 29/32 TATG TATG TATG TATG TATG TATG TTTG TTTT
180830 ATTT * 5 18/20 ATTT ATTT ATAT ATTT ATAT
182458 TTTA * 5 18/20 TTTA TTTA TTAA CTTA TTTA
182895 CATC * 8 30/32 CATC CATC CATC CATC CATC CACC CATC CACC
195472 CTGA * 9 33/36 CTGA CAGA CTGA CTGA CTGA CTGG CTGA CTAA CTGA
208065 CTTT * 5 18/20 CTTT CTTT TTTT CTTT TTTT
224076 ACAG * 10 37/40 ACAG ACAG ACAG CCAG ACAG ACAG ACAG GCAG ACAG GCAG
224851 TTTA * 5 18/20 TTTA TTTA TTTA TTTT TTTT
233292 CTAT * 5 18/20 CTAT CTTT CTAT CTTT CTAT
235508 TTTG * 5 18/20 TTTG TTGG TTGG TTTG TTTG
243031 TTGG * 15 54/60 TTGG TTGG TTGG TTTG TTGG TTGG TTGG TTGG TTGG TTGA TTGA TTGG TTGA TTGA TTGA
263815 ACCA * 8 29/32 ACCA ACCA ACCA ACCA ACCA ACCA ATCA ATCT
278322 CTGA * 5 18/20 CTGA CTAA CTGA CTAA CTGA
278345 ACTG * 7 26/28 ACTG ACTG ATTG ACTG ACTG GCTG ACTG
279595 TATG * 5 19/20 TATG TATG TATG TTTG TATG
283575 TTTG * 6 22/24 TTTG TTTG TTTG TTTG TTTG TGTT
285719 GTTG * 5 18/20 GTTG GTTG GTTG GGTG GCTG
294763 CGCT * 5 19/20 CGCT CGCT CACT CGCT CGCT
301615 GTAT * 5 18/20 GTAT GTAT GTAT TTAC GTAT
-----------------------------------------------------------------------------
Total sequence length......................... 306267
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 32
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AATT-1 ATAC-1 ATTA-1 ATTT-2 ACAA-2 ACAG-2 ACTG-1 ACCA-1
TATG-4 TTTA-2 TTTG-2 TTGG-1 GTAT-1 GTTG-1 GTGG-1 GGTC-1
CAAA-1 CATC-1 CTAT-1 CTTT-1 CTGA-2 CGCT-1 CCAA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290819|gb|AE003441.1|AE003441 Drosophila melanogaster genomic scaffold 142000013386054 section 25 of 35, complete sequence
Position Repeat Coverage Repeat
13409 TCAG * 5 19/20 TCAG TCAG TCAT TCAG TCAG
14309 CTGA * 5 18/20 CTGA CAAA CTGA CTGA CTGA
27698 CCGT * 8 29/32 CCGT CCGT CCGT CCGT CCGT CCGT CCAC CCAT
51093 GTCC * 5 18/20 GTCC GCCC GTCC GTCC GTTC
59858 CAAA * 6 22/24 CAAA CAAA CAAA CAAA CAAC AAAA
67261 CAAC * 5 19/20 CAAC CAAC CAAC CAAC CAGC
75426 CTTT * 6 22/24 CTTT CTTT CATT CTTT CTTT TTTT
141712 TGAC * 5 19/20 TGAC TGAC TGAC TGAA TGAC
142015 AATG * 5 18/20 AATG AATG AATA AGTG AATG
147250 CTTC * 5 18/20 CTTC CTTC CTTC CATC CTGC
149636 TACA * 5 18/20 TACA TGCA TACA TAGA TACA
156166 ATTC * 5 18/20 ATTC ATTC ATTT ATTC ATTT
160645 ACAT * 5 18/20 ACAT ACAT ACAT ATAT ATAT
161103 TAAA * 5 18/20 TAAA TAAA TAAT TAAA TGAA
205919 ACAG * 5 18/20 ACAG ACGG AGAG ACAG ACAG
218053 AATA * 5 18/20 AATA AATA AATA AATA ACAA
241176 ATAG * 6 22/24 ATAG ATAG ATGG ATAG ATTG ATAG
246599 TGTC * 5 18/20 TGTC TGTC TGTC TGAC TGTG
262060 TGAA * 5 18/20 TGAA TGAA TGAA TGAG GGAA
264350 TTAT * 5 18/20 TTAT TTAT TTAT TTCT TTTT
-----------------------------------------------------------------------------
Total sequence length......................... 285272
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AATA-1 AATG-1 ATAG-1 ATTC-1 ACAT-1 ACAG-1 TAAA-1 TACA-1
TTAT-1 TGAA-1 TGAC-1 TGTC-1 TCAG-1 GTCC-1 CAAA-1 CAAC-1
CTTT-1 CTTC-1 CTGA-1 CCGT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290801|gb|AE003440.1|AE003440 Drosophila melanogaster genomic scaffold 142000013386054 section 24 of 35, complete sequence
Position Repeat Coverage Repeat
1282 ACTG * 6 24/24 ACTG ACTG ACTG ACTG ACTG ACTG
12452 AGTC * 5 18/20 AGTC AGTC AGTC TGGC AGTC
16054 GCCA * 5 19/20 GCCA GCCA GTCA GCCA GCCA
31545 GATG * 6 23/24 GATG GATG GATG GATG GCTG GATG
36687 CACC * 5 18/20 CACC CAAC CACC CACC GACC
37657 ATGG * 5 18/20 ATGG CTGG ATGG CTGG ATGG
37677 CTGG * 6 22/24 CTGG CTGC CTGG CTGG CTGG CTGC
37701 ATGA * 5 19/20 ATGA ATGA ATGA ATGA ATGG
39331 GATG * 5 18/20 GATG GATG GCTG GGTG GATG
45623 TGGC * 5 18/20 TGGC TGGC TGGT TGGC TGGG
56914 CCGT * 5 18/20 CCGT CCGT TTGT CCGT CCGT
65383 AAAT * 5 19/20 AAAT CAAT AAAT AAAT AAAT
69539 AACA * 5 18/20 AACA AACA AACA AACA AAAC
80283 TATG * 6 22/24 TATG TATG TATG TATG TATG TAAA
84300 TGTT * 5 18/20 TGTT CGTT CGTT TGTT TGTT
86038 AATA * 5 18/20 AATA AATC ACTA AATA AATA
100152 TGCG * 6 22/24 TGCG TGCG TGCG TGCG TGTG TGTG
107749 ATAC * 5 18/20 ATAC ATAC ATAC ATAT TTAC
124799 GATA * 5 19/20 GATA GATA GGTA GATA GATA
126957 CATA * 5 18/20 CATA CATA CATA TGTA CATA
128290 TCGC * 6 22/24 TCGC TCGC TCGC CCGC TCGC TCTC
129894 ACAT * 5 18/20 ACAT ACAT ACAT ACAT ATTT
132572 TACA * 6 22/24 TACA TATA TACA TACA TACA TATA
135887 GTCA * 5 18/20 GTCA GTTA GTCA GTCA GTCG
140440 GTCA * 7 27/28 GTCA GTCA GTCA GTCA GTCA GTCA CTCA
144522 TATG * 5 18/20 TATG TATG TATG TATG TACA
145626 TATG * 5 18/20 TATG TAAG TATG TATG CATG
163979 GTAT * 5 18/20 GTAT GTAT GTAT GTAT ATGT
190497 ACGG * 5 18/20 ACGG GCGG GCGG ACGG ACGG
192494 GTTC * 6 22/24 GTTC GTTC GTTC GTTC GTTC GTCT
193416 ACAT * 5 18/20 ACAT ACAT ATAT ACAC ACAT
196648 ACCG * 5 18/20 ACCG ACCC ACCG ACTG ACCG
199840 CATA * 5 19/20 CATA CATA CATA CATA TATA
212545 TATG * 5 18/20 TATG TATG TATG TATG TGGG
214568 ATAC * 5 18/20 ATAC ATAC ATAC ATTC ATCC
223588 CCAT * 6 23/24 CCAT CCAT CCAT CCAT CTAT CCAT
232547 TGAA * 5 18/20 TGAA CGAG TGAA TGAA TGAA
246623 TGGG * 5 18/20 TGGG TGGG TGGG TGTT TGGG
258872 CCAA * 6 22/24 CCAA CCAA CCAA CCAA GCAA CCAT
258896 CCAT * 7 28/28 CCAT CCAT CCAT CCAT CCAT CCAT CCAT
259316 TAAA * 5 18/20 TAAA AAAA TAAA TAAA AAAA
275540 ACCA * 7 26/28 ACCA ACCA ACCA ACCA ACCA ACCA GGCA
276311 TAAT * 5 18/20 TAAT TAAT TAAT TAAT AATT
276919 CTGA * 6 24/24 CTGA CTGA CTGA CTGA CTGA CTGA
277791 ACCA * 7 26/28 ACCA ACCA ACCA ACCA ACCA TCTA ACCA
282466 TAAA * 5 19/20 TAAA TAAA TAAG TAAA TAAA
283822 ATTT * 5 18/20 ATTT ATTT ATGC ATTT ATTT
290642 CATC * 11 40/44 CATC CATC CATC TATC CACC CATC CATC CATC CACC TATC CATC
299288 CCAT * 5 18/20 CCAT TCAT CCAT ACAT CCAT
-----------------------------------------------------------------------------
Total sequence length......................... 342068
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 49
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 AATA-1 AACA-1 ATAC-2 ATTT-1 ATGA-1 ATGG-1 AGTC-1
ACAT-2 ACTG-1 ACGG-1 ACCA-2 ACCG-1 TAAA-2 TAAT-1 TATG-4
TACA-1 TGAA-1 TGTT-1 TGGG-1 TGGC-1 TGCG-1 TCGC-1 GATA-1
GATG-2 GTAT-1 GTTC-1 GTCA-2 GCCA-1 CATA-2 CATC-1 CACC-1
CTGA-1 CTGG-1 CCAA-1 CCAT-3 CCGT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290764|gb|AE003439.1|AE003439 Drosophila melanogaster genomic scaffold 142000013386054 section 23 of 35, complete sequence
Position Repeat Coverage Repeat
302 GTTG * 5 18/20 GTTG GTTG GTTG GTTG CTTC
15201 TATG * 5 18/20 TATG TACA TATG TATG TATG
17987 ATAC * 5 19/20 ATAC ATAC ATAT ATAC ATAC
18048 TATG * 5 18/20 TATG TATG TGTG TGTG TATG
19969 TGTA * 5 18/20 TGTA TGTA GCTA TGTA TGTA
20000 ATAC * 5 19/20 ATAC ATAC ATAC ATAC ATAT
21587 ACAT * 6 22/24 ACAT ACAT ACAT ACAT ACAT ATCT
21784 ATAC * 6 22/24 ATAC ATAC ATAC ATAT GTAC ATAC
21984 TATG * 6 22/24 TATG TATG TACA TATG TATG TATG
22027 ATAC * 5 18/20 ATAC ATAC ATAT GTAC ATAC
24301 ATAC * 5 18/20 ATAC ATAC ATAC ATAG CTAC
24432 TACA * 7 26/28 TACA TACA TACA TACA TATG TACA TACA
26461 ATAC * 5 18/20 ATAC ATAC ATAC ATAT GTAC
52400 GCCA * 13 48/52 GCCA GCCA GCCA GCCA GCCA GGCA GCCA GCCA GCCA GCCA GGCA GCCA GTCG
52825 TACA * 5 18/20 TACA GACA TGCA TACA TACA
52870 ATAC * 5 18/20 ATAC ATAC ATAC ACAC ACAC
89689 ACAG * 5 18/20 ACAG ACAC ACAG ACAC ACAG
103239 CTCA * 5 19/20 CTCA CTCA CTCA CTCA CACA
103279 GAGC * 5 18/20 GAGC GAGC GAGA GAGG GAGC
140582 GTCA * 6 22/24 GTCA GTCA TTCA GTCA GTTA GTCA
145654 ACGG * 5 18/20 ACGG ACAG ACAG ACGG ACGG
146301 TTTA * 6 22/24 TTTA TTTA TTTT TTTA TTTA TTTT
173855 ATGT * 6 22/24 ATGT ATGT ATGT ATGT AAGT AAGT
181885 AATA * 5 18/20 AATA AATA AATA AATA ATAA
200063 CAAT * 8 30/32 CAAT CAGT CAAT CATT CAAT CAAT CAAT CAAT
202073 GCCA * 6 22/24 GCCA GCCA ACCA GCCA GCCA GCTA
209582 ACCC * 5 18/20 ACCC ACCC ACCT AGCC ACCC
211988 ATAC * 5 18/20 ATAC ATAC ATAC ATAT TTAC
268106 TACA * 7 26/28 TACA TACA TACA TACA TACA TACA TATG
275171 TACA * 5 19/20 TACA TACA TACA TACA AACA
275695 ATAC * 5 18/20 ATAC ACAC ACAC ATAC ATAC
275754 CATA * 6 22/24 CATA CATA CATA CATA TATA CGTA
279964 TGGT * 6 22/24 TGGT TGGA TGGT TGGT TGGT TGGA
309283 TTGG * 5 18/20 TTGG ATGG TTGG GTGG TTGG
-----------------------------------------------------------------------------
Total sequence length......................... 328089
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 34
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AATA-1 ATAC-9 ATGT-1 ACAT-1 ACAG-1 ACGG-1 ACCC-1 TATG-3
TACA-4 TTTA-1 TTGG-1 TGTA-1 TGGT-1 GAGC-1 GTTG-1 GTCA-1
GCCA-2 CAAT-1 CATA-1 CTCA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290724|gb|AE003438.1|AE003438 Drosophila melanogaster genomic scaffold 142000013386054 section 22 of 35, complete sequence
Position Repeat Coverage Repeat
631 TCGC * 5 18/20 TCGC TCTC TCGC TCGC TCTC
10450 CAAA * 6 22/24 CAAA CAAA CAAA CAAA CAAA TAGA
32609 AAAT * 5 18/20 AAAT AAAT AAAT AAAT ACAC
37837 TCTA * 5 18/20 TCTA TCTT TCTA TCTA TCTC
44546 TTGA * 5 18/20 TTGA TTGA TTGA CTGG TTGA
45947 CATA * 5 18/20 CATA TATA CATA CATA TATA
47546 CATA * 5 18/20 CATA CACA CAGA CATA CATA
50742 TCGG * 5 18/20 TCGG TCAG TCGG TCGG TCCG
62919 CAAA * 5 19/20 CAAA CGAA CAAA CAAA CAAA
71384 ATCC * 6 23/24 ATCC ATCT ATCC ATCC ATCC ATCC
76110 TATG * 5 18/20 TATG TATC TATG TATC TATG
79297 TACA * 5 18/20 TACA TACA TACA TATA TATA
80467 AACC * 5 18/20 AACC AACG AACC AACG AACC
85359 TTTG * 5 19/20 TTTG TTTG TTTG TTTT TTTG
90983 TCCA * 6 22/24 TCCA TCTA TCCA TCTA TCCA TCCA
115780 AACC * 5 18/20 AACC AAAC AACC AACC ACCC
122205 CATA * 5 19/20 CATA CATA CATA CATA CATT
126260 ATAC * 5 18/20 ATAC ATAC ATAC GTAC ATAT
142090 CAAC * 5 20/20 CAAC CAAC CAAC CAAC CAAC
180143 TATG * 6 22/24 TATG TACA TATG TATG TATG TATG
184023 TTGC * 5 19/20 TTGC TTGC TTGG TTGC TTGC
184424 GATC * 5 18/20 GATC GATC GTTC TATC GATC
189001 ATAC * 5 19/20 ATAC ATAC ATAC ATAC ATAT
193410 GTCC * 14 51/56 GTCC GTCC GTCC GTCC GTCC GTCC GTCC GTCC GTCC GTCC GTCC GTCC GTGT CAAC
193612 AACC * 5 18/20 AACC AAGC AACC AACC ATCC
193632 ATCC * 6 24/24 ATCC ATCC ATCC ATCC ATCC ATCC
197018 AAAT * 6 22/24 AAAT AAAC AAAC AAAT AAAT AAAT
198711 TCCG * 5 18/20 TCCG CCCG TCCG TCCG TCCT
200174 CCAT * 6 22/24 CCAT AGAT CCAT CCAT CCAT CCAT
207918 ATCG * 5 19/20 ATCG ATCG ATCG ACCG ATCG
208698 ATCG * 5 18/20 ATCG ATCG ATCG ATTG ATAG
211101 TGTC * 5 18/20 TGTC CGTC TGTC CGTC TGTC
235492 CCAG * 6 22/24 CCAG CCAG CCAG CCAG CCAG CCTT
241771 AGTT * 5 18/20 AGTT AGTT AGTT AGTT TGGT
250980 CATC * 5 20/20 CATC CATC CATC CATC CATC
252001 AAAT * 5 18/20 AAAT AAAT AAGA AAAT AAAT
257285 CCAG * 8 29/32 CCAG CCAG CCAG CCAG CCAA CCAA CCAG CAAG
273425 GATT * 5 19/20 GATT GATT GATT GATT GATG
278537 GTCC * 5 19/20 GTCC GTCT GTCC GTCC GTCC
-----------------------------------------------------------------------------
Total sequence length......................... 299372
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 39
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-3 AACC-3 ATAC-2 ATCG-2 ATCC-2 AGTT-1 TATG-2 TACA-1
TTTG-1 TTGA-1 TTGC-1 TGTC-1 TCTA-1 TCGG-1 TCGC-1 TCCA-1
TCCG-1 GATT-1 GATC-1 GTCC-2 CAAA-2 CAAC-1 CATA-3 CATC-1
CCAT-1 CCAG-2
----------------------------------------------------------------------------
Genomic sequence...
gi|7290686|gb|AE003437.1|AE003437 Drosophila melanogaster genomic scaffold 142000013386054 section 21 of 35, complete sequence
Position Repeat Coverage Repeat
1031 TGTA * 6 23/24 TGTA TGTA TGTA TGTA AGTA TGTA
6027 CTAT * 6 22/24 CTAT CTAT CTAT CTAT CTGT CTCT
31068 GTAT * 6 23/24 GTAT GTAT GTAT GTAT GTAT GCAT
33918 ATAC * 6 22/24 ATAC ATAC ATAC ATAC ATAC GTAT
94613 AAAT * 5 18/20 AAAT AAAT TAAT AAAT ATAT
109092 GAGC * 5 18/20 GAGC AAGC GAGC GAGC GAGA
122286 TTAT * 5 18/20 TTAT TTAT TTAT TTTT TTGT
141542 CCCT * 6 23/24 CCCT CCCT ACCT CCCT CCCT CCCT
148104 CTGA * 5 19/20 CTGA CTGA CTGA CTGA CTGG
171581 GTGC * 5 18/20 GTGC GTGT GTGC GTGT GTGC
194823 AAAT * 5 18/20 AAAT AAAT AAAT AAAT ACAA
204286 CGAC * 6 22/24 CGAC CGAC CGAC CGAC CGAC CACC
204442 CAAA * 5 18/20 CAAA CAAA CAAA CAAA CACC
207031 ATGT * 5 19/20 ATGT ATGT ATGT ATGT GTGT
209812 TACA * 5 18/20 TACA TATA TACA TACA TACG
210222 TTTC * 5 18/20 TTTC ATTG TTTC TTTC TTTC
224815 ATAC * 5 18/20 ATAC ATAC ATAC ATAT ATAT
225998 CTCA * 5 18/20 CTCA CTCT CTCA CTCT CTCA
230147 TCTG * 5 18/20 TCTG TCTG TCTG TCAG TGTG
230305 GTTA * 5 18/20 GTTA GTTA GTTA GTTA TTAA
238652 TATG * 5 19/20 TATG CATG TATG TATG TATG
242517 CATT * 6 22/24 CATT CATT CGTT CATT CATT CGTT
242542 ATTC * 5 18/20 ATTC ATTC ATTC GCTC ATTC
245989 ACAT * 10 38/40 ACAT GCAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAA
250486 CAAT * 6 22/24 CAAT CTGT CAAT CAAT CAAT CAAT
271335 GCTG * 6 22/24 GCTG GTTG GCTG ACTG GCTG GCTG
271971 GTTG * 5 18/20 GTTG GGTG GTTG GGTG GTTG
274388 CGAG * 8 29/32 CGAG CGAG CGAG CGAG CGAG AGAG AGAG AGAG
279187 CTAC * 6 22/24 CTAC CCAC CTAC CCAC CTAC CTAC
280387 TTAT * 5 18/20 TTAT TTAT TTAT TTCG TTAT
282770 CAGA * 6 22/24 CAGA CAGA CAGA CAAA AAGA CAGA
302740 ACCA * 8 29/32 ACCA ACCA ACCA ATCA ACCA ACCA CCCA CCCA
303011 TTAG * 6 23/24 TTAG CTAG TTAG TTAG TTAG TTAG
-----------------------------------------------------------------------------
Total sequence length......................... 305046
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 33
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-2 ATAC-2 ATTC-1 ATGT-1 ACAT-1 ACCA-1 TATG-1 TACA-1
TTAT-2 TTAG-1 TTTC-1 TGTA-1 TCTG-1 GAGC-1 GTAT-1 GTTA-1
GTTG-1 GTGC-1 GCTG-1 CAAA-1 CAAT-1 CATT-1 CAGA-1 CTAT-1
CTAC-1 CTGA-1 CTCA-1 CGAG-1 CGAC-1 CCCT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290653|gb|AE003436.1|AE003436 Drosophila melanogaster genomic scaffold 142000013386054 section 20 of 35, complete sequence
Position Repeat Coverage Repeat
25556 AATA * 5 19/20 AATA AATA TATA AATA AATA
62020 CGAT * 5 19/20 CGAT CGAT CAAT CGAT CGAT
70013 AAAG * 5 18/20 AAAG AAAG AAAG AAAA AAAA
95823 ACAT * 6 22/24 ACAT AAAT ACAT ACAT ACAT AGAT
98178 AAAC * 7 26/28 AAAC ACAC AAAC AAAC AAAC AAAT AAAC
104702 TCCT * 7 26/28 TCCT TCCT TCCG TCCT TCCT TCCT TCCG
114525 ATAC * 6 22/24 ATAC ATAT GTAC ATAC ATAC ATAC
142797 ACAA * 5 18/20 ACAA ACAA AAAA ACAA AAAA
170500 CCGT * 5 20/20 CCGT CCGT CCGT CCGT CCGT
188638 GTAA * 5 18/20 GTAA ATAA GTAA GGAA GTAA
189772 AACA * 6 23/24 AACA AACA AACA AACA AACA AACC
217696 AATA * 5 18/20 AATA AAAA AATA AAAA AATA
222021 TTTG * 6 22/24 TTTG TTTT TTTG TTTG TTTG TTTT
235811 AATA * 5 18/20 AATA AGCA AATA AATA AATA
240689 CGAT * 5 18/20 CGAT CGAT GGAT CGAT TGAT
281657 CCAC * 5 18/20 CCAC CCAC CCAC ACAC ACAC
-----------------------------------------------------------------------------
Total sequence length......................... 307017
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 16
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAG-1 AAAC-1 AATA-3 AACA-1 ATAC-1 ACAA-1 ACAT-1 TTTG-1
TCCT-1 GTAA-1 CGAT-2 CCAC-1 CCGT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290600|gb|AE003435.1|AE003435 Drosophila melanogaster genomic scaffold 142000013386054 section 19 of 35, complete sequence
Position Repeat Coverage Repeat
11492 CCAC * 5 18/20 CCAC CCAA ACAC CCAC CCAC
22226 TACA * 6 22/24 TACA TACA TACA CACA TACA TACT
22630 ATAC * 6 22/24 ATAC ATAC ATAC ATAC ATAT ATAA
24529 TTTG * 9 33/36 TTTG TTTT TTTT TTTG TTTG TTTG TTTG TTTG TTTT
51848 AAGA * 5 18/20 AAGA AAGA AAGA GCGA AAGA
55695 TCCA * 5 18/20 TCCA TCCA TCCA TCCA TCTG
64564 TAAA * 5 18/20 TAAA TAAG TAAA TAAA TAAT
72147 AGAT * 5 18/20 AGAT AGTT AGTT AGAT AGAT
72960 CCAA * 5 18/20 CCAA CCAA CCAA CCAG CCAG
74615 ACGG * 5 18/20 ACGG ATGG ACGG ATGG ACGG
84308 AATG * 10 36/40 AATG AATG AATA AATG AATG AACG AATG AATG ACTG AATA
98601 GCCA * 7 26/28 GCCA GCCA GCCA GCCA GCCA GTCC GCCA
119814 GACC * 5 19/20 GACC GACC GACC GAAC GACC
137602 CAAA * 5 19/20 CAAA CAAA CAAA CAAA CACA
141486 ATCG * 7 26/28 ATCG ATCG ATCG AACG ATCG ATTG ATCG
144552 ACAT * 5 18/20 ACAT ACAT ATAT ACAT ATAT
150048 AATA * 5 20/20 AATA AATA AATA AATA AATA
184492 CCAT * 5 18/20 CCAT CCAT CAAT CCAG CCAT
193545 GTTT * 7 26/28 GTTT ATTT GTTT GTTT GTTT GTTT GTTC
220175 TGGC * 6 22/24 TGGC TGGC TGGC TGGC TGGC TGAA
231277 ATGA * 5 18/20 ATGA ATAA ATGA ATGA ATGT
258050 CATA * 5 18/20 CATA CATA TGTA CATA CATA
261899 ATAC * 5 19/20 ATAC ATAC ATAC ATAC ATAT
264011 TATG * 10 37/40 TATG TATG TATG CATG GATG TATG TATG TATG TATG TATA
264117 TATG * 5 18/20 TATG CATG TATG TATG TATC
269017 TATG * 6 24/24 TATG TATG TATG TATG TATG TATG
277782 CATA * 5 18/20 CATA CAAG CATA CATA CATA
278054 CGCA * 5 18/20 CGCA CGCA CGCA CGCA TGCG
278668 ATAC * 5 18/20 ATAC ATAC ATAA ATAC ATAT
284078 AGTC * 6 23/24 AGTC AGTC AGTC AGTT AGTC AGTC
292443 TAAT * 5 18/20 TAAT TAAT TAAT TTAT AAAT
299749 TATG * 5 18/20 TATG TATG TATG TATA TATA
-----------------------------------------------------------------------------
Total sequence length......................... 300557
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 32
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AATA-1 AATG-1 AAGA-1 ATAC-3 ATGA-1 ATCG-1 AGAT-1 AGTC-1
ACAT-1 ACGG-1 TAAA-1 TAAT-1 TATG-4 TACA-1 TTTG-1 TGGC-1
TCCA-1 GACC-1 GTTT-1 GCCA-1 CAAA-1 CATA-2 CGCA-1 CCAA-1
CCAT-1 CCAC-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290572|gb|AE003434.1|AE003434 Drosophila melanogaster genomic scaffold 142000013386054 section 18 of 35, complete sequence
Position Repeat Coverage Repeat
17042 TGTC * 5 18/20 TGTC TGTC TGTC TGTG TGTT
18911 ATAG * 5 18/20 ATAG ATAC ATAG ATAG AAAG
30817 ACAT * 10 36/40 ACAT ACAG ACAT ACAG ACAT ACAT ACAT ACAT ATAT ATAT
52061 ATGT * 5 18/20 ATGT ATGT ATGT ATGT ACAT
55727 GTTT * 5 18/20 GTTT GTTT GTAT GTTT GTTA
55753 TTGT * 8 30/32 TTGT TTGT TTGT TTGT TTGT TTGT TCGT TTGC
57359 TCAA * 6 22/24 TCAA TCAA CCAG TCAA TCAA TCAA
63112 TGTA * 5 18/20 TGTA TGTG TGTC TGTA TGTA
64182 ATCT * 6 23/24 ATCT ATCT ACCT ATCT ATCT ATCT
72070 AAAT * 5 18/20 AAAT AAAT AAAT AAAT TAAG
73055 AACA * 5 18/20 AACA AACA ATCA ACCA AACA
73075 ACCA * 7 27/28 ACCA ACCA ACCA ACCA ACCA ACCA ACAA
92396 ATGG * 5 19/20 ATGG ATGA ATGG ATGG ATGG
95550 TGTA * 5 18/20 TGTA TGTA TGTA CATA TGTA
109796 GTTG * 5 18/20 GTTG GTTG GTTG GTGG GTGG
128024 TTTA * 5 18/20 TTTA TTTA ATCA TTTA TTTA
133899 TATG * 7 26/28 TATG TATG TATG TATG TATG TATA TATA
141561 ACAT * 5 18/20 ACAT ACAT ACAT ATAT ATAT
145111 ATGG * 6 22/24 ATGG CTGG ATGG ATGG ATGG TTGG
146698 TACA * 5 19/20 TACA TACA TACA TACA TATA
161307 AATA * 5 18/20 AATA AATA AATA AAAA AAAA
163856 GACT * 13 49/52 GACT GACT GACT GACT GACT GACT AACT GACT GACT GACT GACT GGCT GATT
190920 TTGA * 5 18/20 TTGA TTGA TTGA CGGA TTGA
208103 TATG * 5 18/20 TATG TATA TATG TATA TATG
221608 ACAT * 6 22/24 ACAT ATAT ACAT ACAT ACAT ACAA
252831 GACT * 6 23/24 GACT GACT GACT GACT GTCT GACT
278235 ACCC * 6 22/24 ACCC AACC ACCC ACCC AACC ACCC
280287 ACAT * 5 18/20 ACAT ACAT ACAT ACAA ATAT
280616 TACA * 5 19/20 TACA TACA TACA TACA TATA
288913 AAGT * 5 19/20 AAGT AAGT AAGT AAGT AAGA
293026 ATAG * 5 19/20 ATAG ATAG AGAG ATAG ATAG
-----------------------------------------------------------------------------
Total sequence length......................... 302937
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 31
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 AATA-1 AAGT-1 AACA-1 ATAG-2 ATGT-1 ATGG-2 ATCT-1
ACAT-4 ACCA-1 ACCC-1 TATG-2 TACA-2 TTTA-1 TTGA-1 TTGT-1
TGTA-2 TGTC-1 TCAA-1 GACT-2 GTTT-1 GTTG-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290549|gb|AE003433.1|AE003433 Drosophila melanogaster genomic scaffold 142000013386054 section 17 of 35, complete sequence
Position Repeat Coverage Repeat
6466 CAAA * 5 18/20 CAAA CATA CAAA CATA CAAA
6486 CATA * 5 18/20 CATA CATA CATA CATA TGTA
12140 ACTC * 5 18/20 ACTC ACTC ACTC TCTC TCTC
15838 TCGG * 5 18/20 TCGG TCGG TCGG TCGG TCAA
21493 GGCT * 5 18/20 GGCT GGCT GGCT GGCT ATCT
31826 TTCA * 6 22/24 TTCA TGCA GTCA TTCA TTCA TTCA
37468 TATG * 5 19/20 TATG TATA TATG TATG TATG
66273 CAAA * 5 18/20 CAAA CAAA CAAT CAAA CCAA
67385 GTGG * 5 18/20 GTGG GTGG TTGG GTGG TTGG
80766 TTTA * 6 24/24 TTTA TTTA TTTA TTTA TTTA TTTA
91132 TGAT * 5 18/20 TGAT AGAT TGAT GGAT TGAT
94134 ATCC * 5 18/20 ATCC AACC ATCC AACC ATCC
100895 GTCA * 6 24/24 GTCA GTCA GTCA GTCA GTCA GTCA
101121 AATG * 8 29/32 AATG ACTG AATG AATG AATG AATG AATG AGCG
101203 GACT * 5 18/20 GACT GGCT GGCT GACT GACT
113711 ATTC * 5 18/20 ATTC ATTC AATC ATTC AATC
117480 GTGA * 5 18/20 GTGA GTGA GTGA GTGG GTTA
118856 AAAG * 5 18/20 AAAG AAAA AAAG AAAA AAAG
122141 TCTA * 5 18/20 TCTA TCTC TCTA TCTC TCTA
124478 TTTA * 5 18/20 TTTA TTTA TTTT TTTT TTTA
125713 ACAT * 5 20/20 ACAT ACAT ACAT ACAT ACAT
140449 TTTA * 5 18/20 TTTA TTTA TTTA TTTT TTTT
144826 GTTT * 8 29/32 GTTT ATTT GTTT GTTT GTTT GTTT GCTT GCTT
147201 TATG * 5 18/20 TATG TATG TATG TATG TTCG
154777 TACA * 5 18/20 TACA TACA TACG TACA TATA
166155 ATTC * 5 18/20 ATTC ATCC ATCC ATTC ATTC
166176 TTCA * 11 41/44 TTCA TTCA TTCA TTCA TTCA TTCA TTCA TTCA CTCA TTCA GTCC
171429 TCGC * 6 22/24 TCGC TCGC TCGC TCGC TCGC TTTC
173593 AATC * 5 19/20 AATC AATC ACTC AATC AATC
174275 CAAA * 5 19/20 CAAA CAAA CAAA CAAA CAAC
174711 AAAT * 5 20/20 AAAT AAAT AAAT AAAT AAAT
184135 CAGC * 8 29/32 CAGC CAGC CAGC CAGC CAGC CAGG CAGC CAAG
189662 TACA * 11 41/44 TACA TACA TACA TACA TACA TACA TACA TGCG TACA TACA TATA
194692 ACCA * 5 18/20 ACCA ACCG ACCA ACCC ACCA
195531 GTAT * 5 18/20 GTAT ATAT GTAT GTAT ATAT
233578 ACCC * 5 18/20 ACCC AACC ACCC AACC ACCC
253517 GGTT * 5 18/20 GGTT GGTT GGTT GGTG GGTA
258888 TGAC * 10 36/40 TGAC TGAC TGAC TGAC TGAC TGAC TGAC TAAC TGAA TATC
260087 TATG * 7 26/28 TATG TACA TATG TATG TATG TATG TATG
271837 TATT * 7 26/28 TATT TTTT GATT TATT TATT TATT TATT
275216 ATAC * 5 18/20 ATAC ACAC ATAC ATAC ATAT
280576 ACAT * 6 23/24 ACAT ACAT GCAT ACAT ACAT ACAT
294113 TTTG * 5 18/20 TTTG TTTG TTTT TTTG TTTT
294931 AACC * 5 19/20 AACC ATCC AACC AACC AACC
295986 ATCA * 6 22/24 ATCA ATCA ATCA GTCA ATCA ATCG
-----------------------------------------------------------------------------
Total sequence length......................... 303258
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 45
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 AAAG-1 AATG-1 AATC-1 AACC-1 ATAC-1 ATTC-2 ATCA-1
ATCC-1 ACAT-2 ACTC-1 ACCA-1 ACCC-1 TATT-1 TATG-3 TACA-2
TTTA-3 TTTG-1 TTCA-2 TGAT-1 TGAC-1 TCTA-1 TCGG-1 TCGC-1
GACT-1 GTAT-1 GTTT-1 GTGA-1 GTGG-1 GTCA-1 GGTT-1 GGCT-1
CAAA-3 CATA-1 CAGC-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290523|gb|AE003432.1|AE003432 Drosophila melanogaster genomic scaffold 142000013386054 section 16 of 35, complete sequence
Position Repeat Coverage Repeat
2784 GTCT * 5 18/20 GTCT GTCT GTCT GGCT CTCT
8810 TACA * 7 26/28 TACA TACA TACG TACA TACA TACG TACA
8881 ATGT * 5 18/20 ATGT ATGT ATGT GTGT GTGT
17420 GGTG * 5 18/20 GGTG GGTG GGAG GGGG GGTG
19577 TGAC * 9 33/36 TGAC TGAC TGGC TGAC TGAC TGAC TGAC TGAC TCTC
21189 TTCA * 5 18/20 TTCA TTCA CGCA TTCA TTCA
37500 ATAC * 5 18/20 ATAC AAAC ATAC ATAC ATAT
53543 GTGA * 8 29/32 GTGA GTGT GTAA GTGA GTGA GTGA GTGA GTGT
63883 CATA * 5 18/20 CATA CATA CATA CATA CCTC
66297 TATG * 6 22/24 TATG TATG TATG TATG TATG TACC
72808 ATCT * 5 19/20 ATCT ATCT ATCC ATCT ATCT
81282 AGAT * 7 27/28 AGAT AGAT AGAT AGAT AGAT AGAT AGAA
106743 ACAG * 5 18/20 ACAG ACAG ACAG ACAC ACAT
154479 TATG * 5 18/20 TATG TATG TATG TATG TGTA
155320 GGCT * 5 18/20 GGCT GGCT GGCT GGTT GGTT
164469 TGTT * 5 18/20 TGTT TGCT TGTT TGTT TGTA
168884 CAGT * 18 65/72 CAGT TACT CAGT CAGT CAGT CAGT CAGT CAGT CAGT CAGT CAGT CAGT CAAT CAGT CACT CAGT CATT TAGG
168959 TCAG * 6 22/24 TCAG GCAC TCAG TCAG TCAG TCAG
178732 ACCA * 5 18/20 ACCA ACCA GCCA ACCA ACCG
178756 ACCA * 7 26/28 ACCA ACCG ACCA ACCA ACCG ACCA ACCA
190889 TCCA * 5 18/20 TCCA TTCC TCCA TCCA TCCA
193702 TTGA * 7 28/28 TTGA TTGA TTGA TTGA TTGA TTGA TTGA
240157 TGAC * 5 18/20 TGAC TGAC TGAC TGAC TTAT
240285 TACA * 6 22/24 TACA TATG TACA TACA TACA TACA
259840 AGTC * 6 22/24 AGTC AGTC AGTC AGTC AGCC ATTC
259868 AGTC * 11 40/44 AGTC AGTC AGTC AGTC AGTC AGTC AGTT AGTC AGTT AGTT AGTT
263613 TATT * 6 23/24 TATT TACT TATT TATT TATT TATT
273374 AACC * 8 30/32 AACC AACC AACC AACC AACC AACC AACC CAAC
277255 ATTT * 5 18/20 ATTT ACTT ATTT ATTT ATTA
284153 TAAA * 5 18/20 TAAA TAAA TAAG AAAA TAAA
300291 CATA * 5 18/20 CATA CATA CATA TATA TATA
300561 TATG * 6 23/24 TATG TATG TATG TATG TATG TGTG
313537 GGTT * 6 23/24 GGTT GGTT TGTT GGTT GGTT GGTT
314860 CCCT * 5 18/20 CCCT ACCT CCCT CCCT CCAT
-----------------------------------------------------------------------------
Total sequence length......................... 319596
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 34
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AACC-1 ATAC-1 ATTT-1 ATGT-1 ATCT-1 AGAT-1 AGTC-2 ACAG-1
ACCA-2 TAAA-1 TATT-1 TATG-3 TACA-2 TTGA-1 TTCA-1 TGAC-2
TGTT-1 TCAG-1 TCCA-1 GTGA-1 GTCT-1 GGTT-1 GGTG-1 GGCT-1
CATA-2 CAGT-1 CCCT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290491|gb|AE003431.1|AE003431 Drosophila melanogaster genomic scaffold 142000013386054 section 15 of 35, complete sequence
Position Repeat Coverage Repeat
4377 TGTC * 6 22/24 TGTC TGTC TGTC TGTC TGTC CGTT
10225 ACAT * 5 18/20 ACAT ACAT ACAT ACAT AAGT
19946 TAAT * 5 18/20 TAAT TAAT TAAT TAAT TAGC
29146 TATG * 8 30/32 TATG TATG CATG TATG TATG TATG TGTG TATG
30601 CCAC * 5 18/20 CCAC ACAC ACAC CCAC CCAC
47412 TATG * 6 22/24 TATG TATG TATG TACA TATG TATG
62301 AGGG * 5 19/20 AGGG AGGG AGGG AGGG GGGG
73442 GTGG * 5 19/20 GTGG GTGG GTGG GTGG GTGT
76694 TGGC * 5 18/20 TGGC TGCA TGGC TGGC TGGC
76971 GCCA * 5 18/20 GCCA GCCA GCCA TCCA ACCA
76991 TCCA * 5 18/20 TCCA ACCA TCCA ACCA TCCA
88201 ATAC * 5 18/20 ATAC ATAC ATAC ATAC ATGG
90457 GTCA * 6 22/24 GTCA GGCA GTCA GTCA GTTA GTCA
90481 GTTA * 5 18/20 GTTA GTCA GTTA GTCA GTTA
96534 TAAA * 6 22/24 TAAA TAAA TGAA TAAA TAAA TAAC
103028 TCTG * 5 18/20 TCTG TCTG TCCA TCTG TCTG
104495 GACT * 5 18/20 GACT GACT AATT GACT GACT
115507 CATC * 5 18/20 CATC CATC CATC CAAC CAAC
122334 GTGG * 5 18/20 GTGG GTGT GTGG GTGT GTGG
130910 ATAC * 8 30/32 ATAC ATAC ATAC ATAC ATAC ATAC GTAC ATAT
155974 GTAT * 5 18/20 GTAT GTAT GTAC GTTT GTAT
165476 TATG * 6 22/24 TATG TATG TATG TATG TTTG TGTG
185917 CCAA * 9 34/36 CCAA CAAA TCAA CCAA CCAA CCAA CCAA CCAA CCAA
188465 GCTG * 6 24/24 GCTG GCTG GCTG GCTG GCTG GCTG
198115 AACC * 5 18/20 AACC AACC AACC GACC GACC
199264 GATG * 5 18/20 GATG GTTG GATG GTTG GATG
217407 ATAC * 5 18/20 ATAC ATAC ATAC ATAT TTAC
221094 TCAA * 5 18/20 TCAA TCAA ACAA TCAA TCCA
223826 GGCT * 9 33/36 GGCT GGCT GGCT GGCT GGCT GGCT GGCT GGCT TTAT
224158 AACC * 6 22/24 AACC AACC ATCC AACC AACC ATCC
226996 TACA * 5 18/20 TACA TACA TACA TATG TACA
227397 TACA * 10 36/40 TACA TACA TACA TACA TACA TACA TACA TACA TATG TATG
229775 ATGT * 5 18/20 ATGT ATGC ATGT GTGT ATGT
249803 TATG * 5 19/20 TATG TATG TATG TATG TTTG
254212 GATA * 5 18/20 GATA GATA GATA GATT GGTA
271794 AAAT * 5 19/20 AAAT AAAT AAAA AAAT AAAT
301016 ACAT * 5 18/20 ACAT AAAT ACAT ACAT ACGT
-----------------------------------------------------------------------------
Total sequence length......................... 311408
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 37
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 AACC-2 ATAC-3 ATGT-1 AGGG-1 ACAT-2 TAAA-1 TAAT-1
TATG-4 TACA-2 TGTC-1 TGGC-1 TCAA-1 TCTG-1 TCCA-1 GATA-1
GATG-1 GACT-1 GTAT-1 GTTA-1 GTGG-2 GTCA-1 GGCT-1 GCTG-1
GCCA-1 CATC-1 CCAA-1 CCAC-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290460|gb|AE003430.1|AE003430 Drosophila melanogaster genomic scaffold 142000013386054 section 14 of 35, complete sequence
Position Repeat Coverage Repeat
521 GTGC * 5 18/20 GTGC GTGC GTGC GTGT GTGT
14133 AAAT * 5 18/20 AAAT AAAT AAAT ATAT AGAT
25176 ATAC * 5 18/20 ATAC ATAC TCAC ATAC ATAC
55291 ATAC * 5 18/20 ATAC AAAC ATAC ATAC ATAT
87846 ACAG * 5 19/20 ACAG ACAG CCAG ACAG ACAG
91458 CGGT * 5 18/20 CGGT CGGT CGGT TGGT TGGT
91478 TGGT * 5 18/20 TGGT TGGT TGGT TTGT TGGA
100051 TCAG * 8 30/32 TCAG TCAG TCAG TCAG TCAG TCAG TCAG TCTC
130157 TCTG * 5 18/20 TCTG TCTG TCTG GCTG ACTG
146706 AGAC * 5 18/20 AGAC AGAG CGAC AGAC AGAC
155632 CAGC * 5 18/20 CAGC CTGC CAGC CAGC CAGT
166838 GATA * 6 24/24 GATA GATA GATA GATA GATA GATA
169453 GTGG * 6 22/24 GTGG GTGG TTGG GTGG TTGG GTGG
169477 CTGG * 5 18/20 CTGG TTGG CTGG TTGG CTGG
198973 TACA * 5 18/20 TACA TACA CACA TACA CACA
200626 TACA * 6 23/24 TACA TACA TACA TACA TACA TATA
200996 AAAT * 5 18/20 AAAT AAAT AAAT AAAT AATA
210154 GACG * 7 26/28 GACG GACG GACG GACG GACG GACA GACA
230363 ATAC * 7 27/28 ATAC ATAC GTAC ATAC ATAC ATAC ATAC
234452 TATG * 5 18/20 TATG TATG TATG TAAG TAGG
237823 ATGT * 5 18/20 ATGT ATGT ATGT ACGG ATGT
245436 TATG * 5 18/20 TATG TATG TATA TATG TAGG
291435 CAGC * 7 27/28 CAGC CAGC CAGC CAGC CAGC CAGC CAGT
-----------------------------------------------------------------------------
Total sequence length......................... 294292
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 23
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-2 ATAC-3 ATGT-1 AGAC-1 ACAG-1 TATG-2 TACA-2 TGGT-1
TCAG-1 TCTG-1 GATA-1 GACG-1 GTGG-1 GTGC-1 CAGC-2 CTGG-1
CGGT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290438|gb|AE003429.1|AE003429 Drosophila melanogaster genomic scaffold 142000013386054 section 13 of 35, complete sequence
Position Repeat Coverage Repeat
1902 AATT * 5 19/20 AATT AATT AATA AATT AATT
18419 TCTA * 8 29/32 TCTA TCTA TCTA TCTT TCTA TCTA TCCA TCTG
34307 CATA * 5 18/20 CATA TGTA CATA CATA CATA
38301 CATA * 5 18/20 CATA CATA CATA TGTA CATA
47411 TACA * 5 19/20 TACA TACA TACA TACA TATA
49907 TACA * 5 18/20 TACA TATG TACA TACA TACA
60123 ACCC * 5 18/20 ACCC ACCC ACTA ACCC ACCC
77836 ATCA * 8 29/32 ATCA ATCA ATCA ATCA ATCA ATCA ATCT ATAG
78195 AATG * 5 19/20 AATG AATG AATG AATG AGTG
87291 CCGA * 5 18/20 CCGA CCAA CCGA CCAA CCGA
88985 TACA * 5 18/20 TACA CACA TACA TACA TACG
89005 TATG * 5 19/20 TATG TATG TACG TATG TATG
109017 TTAA * 5 18/20 TTAA TTAT TTAA CTAA TTAA
114798 ATTT * 5 18/20 ATTT ATTT TTTT ATAT ATTT
130057 AAAC * 6 24/24 AAAC AAAC AAAC AAAC AAAC AAAC
130267 AAAC * 5 19/20 AAAC CAAC AAAC AAAC AAAC
130479 TATG * 5 19/20 TATG TATG TATG TACG TATG
142975 ATAC * 5 18/20 ATAC ATAC ATAC ATAT ATAA
184583 GTCC * 6 22/24 GTCC GTCC GTCC GCCT GTCC GTCC
191262 TTTG * 5 18/20 TTTG TTTG TGTT TTTG TTTG
204669 CAGC * 5 19/20 CAGC CAGC CAGC CAGT CAGC
206412 ATAC * 5 18/20 ATAC ATAC ATAC ATGC ATAT
211342 GCGA * 5 18/20 GCGA GCGA GAGA GTGA GCGA
211553 TACA * 5 18/20 TACA TACA TACA TATG TACA
214106 TGGT * 5 18/20 TGGT TGGT TGGT TGGT TGTG
231289 TATG * 5 18/20 TATG TGTG TATG TATG TTTG
237095 ATAC * 5 18/20 ATAC ATAC ATAC ATAC AGAG
251239 CCAT * 5 18/20 CCAT CCAT CCAG CCAT CCAG
251261 ATCC * 5 18/20 ATCC ATCC AACC ACCC ATCC
269569 TCCA * 12 44/48 TCCA TCCA TCCA TCCA TCCA TCCA ACAA TCCA TCCA ACAA TCCA TCCA
279361 TGTT * 5 18/20 TGTT TGAT TGTT TGTT TGAT
282535 ACCA * 5 18/20 ACCA ACCA ACCC ACTA ACCA
-----------------------------------------------------------------------------
Total sequence length......................... 297405
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 32
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAC-2 AATT-1 AATG-1 ATAC-3 ATTT-1 ATCA-1 ATCC-1 ACCA-1
ACCC-1 TATG-3 TACA-4 TTAA-1 TTTG-1 TGTT-1 TGGT-1 TCTA-1
TCCA-1 GTCC-1 GCGA-1 CATA-2 CAGC-1 CCAT-1 CCGA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290425|gb|AE003428.1|AE003428 Drosophila melanogaster genomic scaffold 142000013386054 section 12 of 35, complete sequence
Position Repeat Coverage Repeat
5884 TGTA * 8 29/32 TGTA TATA TGTT TGTA TGTA TGTA TGTA TGTG
10914 CCAT * 10 36/40 CCAT CCAT CCAT CCAT CCAT CCAT CCAT CTAT TCAT TTAT
11809 GACG * 8 29/32 GACG GACG GACG AACG GACG AACG GACG GACA
13037 GTAT * 5 19/20 GTAT GTAT GTAT GTAT GTGT
30219 ACAT * 5 19/20 ACAT ACAT ACAT ACAT ACAA
75304 TTAT * 6 22/24 TTAT TTAT TTAT TTAT TTAT TTCG
143071 TATG * 5 18/20 TATG TATA TATG TATA TATG
150993 AAAT * 5 18/20 AAAT ATAT ACAT AAAT AAAT
152433 ATTC * 6 22/24 ATTC ATTC ATTC ATAC ATTT ATTC
163966 ACAG * 6 22/24 ACAG ACAA ACAG ACAG ACAG ACAA
172099 TGAC * 8 29/32 TGAC TAAC TGAC TGAC TGAC TGAC TGAC TCCC
172704 ACAT * 10 37/40 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAC ATAG
173256 ATAC * 5 18/20 ATAC ATAC ATAC ATAC ACAT
178710 CATA * 6 22/24 CATA CATA CATA TATG CATA CATA
188732 TATG * 5 18/20 TATG TATG TATG TATG TACA
189130 TATG * 5 18/20 TATG TATG TATG TATG TAGC
189191 AAAT * 5 18/20 AAAT AATT AAAT AAAT ACAT
195398 TACA * 5 18/20 TACA TACA TATG TACA TACA
196394 TACA * 5 18/20 TACA TACA TATC TACA TACA
196590 TCAG * 5 18/20 TCAG TCAG TCAG TCCG TCAA
202880 TGTT * 5 18/20 TGTT TGTT TGTT TGTT TTTG
208574 ATAC * 5 18/20 ATAC ATGC ATAC ATAC ACAC
219144 ACAT * 6 22/24 ACAT ACAT ACAT ACAT ACAT ATAC
224316 AAAT * 6 22/24 AAAT AAAT AACT AATT AAAT AAAT
231953 CAAA * 5 18/20 CAAA CAAA CAAA CAAA TAAT
238800 ACAA * 5 18/20 ACAA ACCA AAAA ACAA ACAA
245470 GGAT * 5 18/20 GGAT GGAT AGAT GGCT GGAT
253765 ATAC * 7 26/28 ATAC ATAC ATAC ATAC ATAC ATAT ATAG
257711 ATTT * 5 18/20 ATTT ATTT ATTT AGTT TTTT
262486 GAGC * 5 18/20 GAGC GAGC GAGC GAGA GAGA
279454 TATG * 5 18/20 TATG TACA TATG TATG TATG
283469 GTAT * 6 23/24 GTAT ATAT GTAT GTAT GTAT GTAT
283750 ATGT * 6 22/24 ATGT ACAT ATGT ATGT ATGT ATGT
284699 ATAC * 8 29/32 ATAC ATAC ATAC ATAC ATAC ATAC ATAC GTTT
285308 ATGT * 5 19/20 ATGT ATGT ATGT ATGA ATGT
288917 TGTA * 5 18/20 TGTA TGTA TGTG TGTA TGTG
-----------------------------------------------------------------------------
Total sequence length......................... 301465
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 36
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-3 ATAC-4 ATTT-1 ATTC-1 ATGT-2 ACAA-1 ACAT-3 ACAG-1
TATG-4 TACA-2 TTAT-1 TGAC-1 TGTA-2 TGTT-1 TCAG-1 GAGC-1
GACG-1 GTAT-2 GGAT-1 CAAA-1 CATA-1 CCAT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290398|gb|AE003427.1|AE003427 Drosophila melanogaster genomic scaffold 142000013386054 section 11 of 35, complete sequence
Position Repeat Coverage Repeat
5740 GTGC * 5 18/20 GTGC GTGC GTGC GTGT GTGT
15725 AAAT * 5 18/20 AAAT AAAT AAAT AAAT GAAA
16142 TTTA * 6 22/24 TTTA TTTA TTTA TTTA TTTT TTTT
27829 AACA * 5 18/20 AACA AACA AACA AAAA AAAA
30925 ACAA * 6 22/24 ACAA ACAA ACAA AAAA AAAA ACAA
33351 ATTT * 5 18/20 ATTT TTTT TTTT ATTT ATTT
44840 TATT * 5 18/20 TATT TATA TATT TATA TATT
56013 TTGA * 5 19/20 TTGA TTGA TTAA TTGA TTGA
64512 CATA * 5 18/20 CATA CATA CATA GATA CAAA
74866 CCAT * 6 23/24 CCAT CCAT TCAT CCAT CCAT CCAT
76822 TTTG * 5 18/20 TTTG TTTG CTTT TTTG TTTG
80695 TCAA * 6 24/24 TCAA TCAA TCAA TCAA TCAA TCAA
82694 TCTG * 5 18/20 TCTG TTTG TCTG TCTG TTTG
83655 TCTA * 11 41/44 TCTA TCTA GCTA TCTA TCAA TCTA TCTA TCTA TCTA TCTA TCTC
91545 TGTT * 5 18/20 TGTT TGTT CGAT TGTT TGTT
91570 GTTT * 10 36/40 GTTT GTCT GTTT GTTT GTTT GTTT GTTT GTTT GATG ATTT
92103 TTAA * 6 22/24 TTAA TTAA TTAA TTAA TTAA CTCA
97819 AAAG * 5 18/20 AAAG AAAG AAAG AAGG AAAA
103875 ATGT * 5 19/20 ATGT ATGT ATGT ATGT ATCT
106116 TTGT * 6 23/24 TTGT TTGT TTGT TTGT TTTT TTGT
109319 CTGA * 5 18/20 CTGA CTGA CTAA CTGA CTGG
120803 ACAT * 5 18/20 ACAT ACAT ACAT ACAT ATGT
122334 ACAT * 10 39/40 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACGT
128802 TATG * 5 18/20 TATG TATG TATG TACA TATG
129849 TATG * 5 18/20 TATG TATG TATG TATG TAGA
139280 TTCT * 6 22/24 TTCT TTCC TTCT TTCT TTCT TTCA
143990 ATCT * 5 18/20 ATCT ATAT ATCT ATAT ATCT
150053 TGTA * 5 18/20 TGTA TATA TGTA CGTA TGTA
154803 ATCA * 10 37/40 ATCA ATCA ATCA ATCA ATCA ATCA ATTA ATCA ATCA AACC
157852 CATA * 5 18/20 CATA CATA CATA TGTA CATA
158001 TTTC * 5 18/20 TTTC TTTC TTTT TTTC TTTT
158532 TATG * 5 18/20 TATG TACA TATG TATG TATG
162787 ATGA * 12 45/48 ATGA ATGA ATGA ATAA ATGA ATGA ATGA ATGA ACGA ATGA GTGA ATGA
170848 GAAA * 5 18/20 GAAA GAAA AAAA AAAA GAAA
172020 ATAA * 6 22/24 ATAA ATAA ATAC ATAA ATAA TTAA
182495 TATC * 5 18/20 TATC TATA TATC TATA TATC
190342 TATG * 5 18/20 TATG TATA TATG TATG TATA
204332 ACAT * 5 18/20 ACAT ACAT ATGT ACAT ACAT
205301 TACA * 5 19/20 TACA TACA TTCA TACA TACA
207594 ACAT * 5 18/20 ACAT ACAT ACAT ATGT ACAT
208345 TACA * 6 23/24 TACA TACA TACA TACA TGCA TACA
214535 TCTG * 5 18/20 TCTG TCTG GCTG TCTG TCTA
216684 ATCG * 6 23/24 ATCG ATCG ATCG ATCG ATCG ATCT
228459 ATGT * 11 42/44 ATGT GTGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT GTGT
232935 CAAA * 5 18/20 CAAA CAAA CACA CACA CAAA
234642 GTAT * 5 18/20 GTAT GCAT GTAC GTAT GTAT
286520 ATGT * 5 19/20 ATGT ATGT ATGT ATGT ATTT
287666 TTTA * 5 18/20 TTTA TTTA TTTA TTTG TTTG
297805 CCAA * 5 18/20 CCAA CCAA CCAA CCAC CCAC
-----------------------------------------------------------------------------
Total sequence length......................... 310909
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 49
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 AAAG-1 AACA-1 ATAA-1 ATTT-1 ATGA-1 ATGT-3 ATCA-1
ATCT-1 ATCG-1 ACAA-1 ACAT-4 TATT-1 TATG-4 TATC-1 TACA-2
TTAA-1 TTTA-2 TTTG-1 TTTC-1 TTGA-1 TTGT-1 TTCT-1 TGTA-1
TGTT-1 TCAA-1 TCTA-1 TCTG-2 GAAA-1 GTAT-1 GTTT-1 GTGC-1
CAAA-1 CATA-2 CTGA-1 CCAA-1 CCAT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290382|gb|AE003426.1|AE003426 Drosophila melanogaster genomic scaffold 142000013386054 section 10 of 35, complete sequence
Position Repeat Coverage Repeat
21176 GCCA * 7 26/28 GCCA GCCA GCCA GCCA GCCA GCCA GCTC
22487 TATC * 10 36/40 TATC TATC TATC TATC TATC TATC TATT TCTC TATA TATA
26371 GAAT * 10 36/40 GAAT AAAT GAAT GAAT GAAT GAAT GAAT GAAT GAAT GTTC
36946 ATAC * 8 29/32 ATAC ATAT GTAC ATAC ATAC ATAC ATAC ATAT
44393 TGAC * 5 18/20 TGAC TAAC TGAT TGAC TGAC
62372 CAGT * 8 29/32 CAGT CAGT CAGT CAGT CAGT CAAT CAAT CAGC
66193 TATG * 5 18/20 TATG TATG TATG TACA TATG
73059 AGTC * 9 33/36 AGTC AGTC AGTC AGTC AGTC AGTT AGTT AGTT AGTC
85713 ATCC * 5 18/20 ATCC ATCC ATGC AACC ATCC
92848 CTAT * 6 22/24 CTAT CTAT GTAT TTAT CTAT CTAT
98862 GATG * 5 18/20 GATG GATG GATG GATG GCCG
100530 CATA * 5 18/20 CATA CATA CATA TATA TATA
110439 AACA * 5 18/20 AACA AGCA AACA AACG AACA
117686 CAAA * 5 18/20 CAAA CAAA CAAA CAAA CAGC
132180 TATG * 6 23/24 TATG TATG TATG TATG TTTG TATG
140723 CATA * 5 19/20 CATA CATA CATA CACA CATA
141367 TGTA * 5 18/20 TGTA TGGA TGTA TGGA TGTA
145549 TACA * 5 18/20 TACA TACA TACA TGCA TATA
159448 ATCA * 5 19/20 ATCA ATCA GTCA ATCA ATCA
164232 TCAT * 7 26/28 TCAT TCAT TCAT TCGC TCAT TCAT TCAT
171363 TCCC * 5 18/20 TCCC TCCC TCCC CCCC CCCC
171815 TTTA * 6 22/24 TTTA TTTA TTTA TTTA TTTT TTTT
176801 AATG * 7 26/28 AATG AATG AATG AATG AATG AATG AGGG
177444 TTAT * 5 19/20 TTAT TTAT TTAT TTAT TTAG
187699 TTTG * 5 18/20 TTTG TTTG TTTG TTTC TTTC
193058 TAAT * 5 18/20 TAAT TAAT TAAC TAAT TTAT
210626 GATG * 6 23/24 GATG GTTG GATG GATG GATG GATG
211939 AAAT * 5 18/20 AAAT AAAT AAAT AAAT AATG
229622 ACTA * 5 18/20 ACTA GCTA ACTA GCTA ACTA
230926 GAAA * 6 22/24 GAAA GAAA GAAA GAAA AGAA GAAA
236230 AAAT * 5 18/20 AAAT CAAT GAAT AAAT AAAT
248324 TACA * 6 22/24 TACA TACA TACA TACA TACA TGCG
251849 CCAC * 5 18/20 CCAC CCAC CCCC CCCC CCAC
275902 TTTA * 5 18/20 TTTA TTTA TTTA TTTA TTGG
293386 CATA * 7 26/28 CATA CTCA CATA CATA CATA CATA CATA
297390 ACAT * 6 23/24 ACAT ACAT ACAT ACAT ACAT ATAT
-----------------------------------------------------------------------------
Total sequence length......................... 300193
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 36
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-2 AATG-1 AACA-1 ATAC-1 ATCA-1 ATCC-1 AGTC-1 ACAT-1
ACTA-1 TAAT-1 TATG-2 TATC-1 TACA-2 TTAT-1 TTTA-2 TTTG-1
TGAC-1 TGTA-1 TCAT-1 TCCC-1 GAAA-1 GAAT-1 GATG-2 GCCA-1
CAAA-1 CATA-3 CAGT-1 CTAT-1 CCAC-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290341|gb|AE003425.1|AE003425 Drosophila melanogaster genomic scaffold 142000013386054 section 9 of 35, complete sequence
Position Repeat Coverage Repeat
10333 ATGT * 5 18/20 ATGT ATGT ATGT ATGA ATAT
22276 GATC * 5 19/20 GATC GATC GATC GATT GATC
42849 AGTT * 5 19/20 AGTT AGTT AGTT ATTT AGTT
62905 TATG * 5 18/20 TATG TATG TATG TAAG TATT
68607 ATTT * 6 22/24 ATTT ATTT ATAT TTTT ATTT ATTT
95733 TATG * 5 18/20 TATG TATG TATG TATG AAGG
111320 CTGT * 5 19/20 CTGT CCGT CTGT CTGT CTGT
112963 TACA * 5 19/20 TACA TACA TACA TACA TACT
116286 TTTG * 5 19/20 TTTG TTTG TTTG TTTG TTTT
116313 CTGT * 6 23/24 CTGT CTGT CTGT CTGT CGGT CTGT
122884 TATG * 5 19/20 TATG TATG TATG TATG TATT
125795 TAAC * 6 24/24 TAAC TAAC TAAC TAAC TAAC TAAC
141347 AAGC * 5 18/20 AAGC AAGC AAGC CAGC CAGC
159451 GGTC * 5 18/20 GGTC GGTC GGTC GGTC GGGA
163072 TACA * 5 18/20 TACA TACA TACA TACG TACG
194338 GTGA * 5 18/20 GTGA GGGA GTGA GAGA GTGA
198753 TCCA * 6 23/24 TCCA TCCA TCCA TCCA TCCA TCCC
225100 GTCA * 5 18/20 GTCA GCCA GTCA TTCA GTCA
228785 ACAT * 6 22/24 ACAT ACAT ACAT ACAT CCAT ACTT
-----------------------------------------------------------------------------
Total sequence length......................... 300205
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAGC-1 ATTT-1 ATGT-1 AGTT-1 ACAT-1 TAAC-1 TATG-3 TACA-2
TTTG-1 TCCA-1 GATC-1 GTGA-1 GTCA-1 GGTC-1 CTGT-2
----------------------------------------------------------------------------
Genomic sequence...
gi|7290316|gb|AE003424.1|AE003424 Drosophila melanogaster genomic scaffold 142000013386054 section 8 of 35, complete sequence
Position Repeat Coverage Repeat
8857 AGTG * 5 20/20 AGTG AGTG AGTG AGTG AGTG
37674 AAAT * 5 18/20 AAAT GAAT AAAT AAAT AAAA
78589 GACA * 6 22/24 GACA GACA GACA CACA GATA GACA
100545 CCCA * 5 18/20 CCCA CCCA CCCA CACA CACA
105305 ACGG * 5 18/20 ACGG TCGG ACGG ACGG ACGT
105506 AAAT * 5 19/20 AAAT AAAT AAAT AAAT AACT
110109 TTCA * 5 18/20 TTCA GCCA TTCA TTCA TTCA
139749 TTGG * 8 29/32 TTGG TTGG TTGG TTGG TTGG TTAG ATGG TTAG
145720 GACA * 6 23/24 GACA GACA GACA GACA GACA GGCA
150966 TGTA * 5 18/20 TGTA TATA TGTA TGTA TGTG
155342 TTGT * 6 22/24 TTGT TTAT TTGT TTGT TGGT TTGT
155374 TTGT * 8 30/32 TTGT TTGT TTGT TTAT TTGT TTGT TTGA TTGT
159478 GACA * 10 36/40 GACA GACA GACA AACA GACA GATA GACA GACA GGCA GGCA
162521 ATGT * 11 42/44 ATGT ATGT ATTT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ACGT
170434 TGAC * 8 29/32 TGAC TAAC TGAC TGAC TGAC TGAC TGAC TGCG
191311 TTTA * 5 18/20 TTTA CTTA TTTA TTTA TTTT
195788 GTCA * 16 58/64 GTCA GTCA GTCA GTCA GTCA GTCA GTCA GTCA GTCA GTCA ACTA GTCA GTCA GTCA GTCA CATA
197048 AAAC * 5 18/20 AAAC AAAC AGGC AAAC AAAC
198392 TCTA * 9 33/36 TCTA TCTT TCTA TCTA TCTA TCTA TCTA TCTT TCAA
198896 GCCC * 5 18/20 GCCC GCCT GCCC GCCT GCCC
202144 GACA * 8 29/32 GACA GACA GACA GACA GACA CACA CACA CACA
231072 ACAA * 5 18/20 ACAA ACAA ACAA ACAA AAAC
272919 TCAT * 6 22/24 TCAT TCAT TCAT TCGT TCAT TCCT
287032 ACCG * 5 18/20 ACCG ACCG ACCG ACCG CCCA
-----------------------------------------------------------------------------
Total sequence length......................... 289090
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 24
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-2 AAAC-1 ATGT-1 AGTG-1 ACAA-1 ACGG-1 ACCG-1 TTTA-1
TTGT-2 TTGG-1 TTCA-1 TGAC-1 TGTA-1 TCAT-1 TCTA-1 GACA-4
GTCA-1 GCCC-1 CCCA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290252|gb|AE003423.1|AE003423 Drosophila melanogaster genomic scaffold 142000013386054 section 7 of 35, complete sequence
Position Repeat Coverage Repeat
30131 TTTC * 5 18/20 TTTC TTTC TTAC ATTC TTTC
34539 TGCA * 5 18/20 TGCA TTGA TGCA TGCA TGCA
40110 GAGC * 5 18/20 GAGC GAAC GAGC GAGT GAGC
41639 TCAG * 5 19/20 TCAG TCAG TCAG TCAG TCAA
56540 AAAT * 5 19/20 AAAT AAAT ATAT AAAT AAAT
58062 TACA * 7 26/28 TACA AACA TACA TACA TACA TAAA TACA
102545 GTCC * 13 48/52 GTCC GCCC GTCC GTCC GTCC GTCT GTCC GTCC GTCC GTCC GTCC GTCC GTAT
155789 TCGC * 5 19/20 TCGC TAGC TCGC TCGC TCGC
169980 AAAC * 6 22/24 AAAC AAAC AAAC AAAC AAAC AACA
170104 AAAC * 5 18/20 AAAC AAAC AAAA AAAC AAAG
188390 GCTC * 10 36/40 GCTC GCTC GCTC GCTC GCTC GCTC ACTC TCTC TCTC TCTC
202839 GTTT * 5 19/20 GTTT GTTT GTTT GTTG GTTT
211519 TGTA * 11 40/44 TGTA TATA TGTA TGTA TGTA TGCA TGTA TGCA TGTA TGTA TGTG
212585 TATG * 5 19/20 TATG TATG TATG TATG TATA
216717 GAGT * 5 18/20 GAGT GAGT GAGT GAGA GAGA
219686 GCTC * 6 22/24 GCTC GCTC GCTC GCCC GCCC GCTC
220825 AGGC * 5 18/20 AGGC AGGC AGGC AGGC AAGG
221713 TTGT * 5 18/20 TTGT TTGT TTGT TTGT TTTC
222043 TACA * 5 18/20 TACA TATG TACA TACA TACA
223613 GACG * 6 22/24 GACG GACG GACG GACA GACG GACA
227427 ATGT * 5 18/20 ATGT ATGT ATGT ATGT GTGC
235055 TACA * 5 19/20 TACA TACA TACA TGCA TACA
236618 ACAT * 6 22/24 ACAT ATGT ACAT ACAT ACAT ACAT
236797 GGAG * 5 18/20 GGAG TGAA GGAG GGAG GGAG
237846 ATAC * 6 22/24 ATAC CAAC ATAC ATAC ATAC ATAC
241540 TATG * 6 22/24 TATG TATG TATG TATG TATG TTCG
252334 TATG * 5 18/20 TATG TATG TACA TATG TATG
257259 TGGA * 5 19/20 TGGA TGGA TGGA TGGA TGGG
259545 TACA * 6 22/24 TACA TACA TACA TATG TACA TACA
265600 TGGT * 8 29/32 TGGT TGGT GGGT TGGT TGGT TGGT TTGT TTGT
267923 TATG * 8 29/32 TATG TACA TATG TATG TATG TATG TATG TAAG
268538 TACA * 6 22/24 TACA TACA TATG TACA TACA TACA
271643 CTGG * 9 33/36 CTGG CTGG CTGG CTGG CTGG TTGG GTGG CCGG CTGG
-----------------------------------------------------------------------------
Total sequence length......................... 291976
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 33
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 AAAC-2 ATAC-1 ATGT-1 AGGC-1 ACAT-1 TATG-4 TACA-5
TTTC-1 TTGT-1 TGTA-1 TGGA-1 TGGT-1 TGCA-1 TCAG-1 TCGC-1
GAGT-1 GAGC-1 GACG-1 GTTT-1 GTCC-1 GGAG-1 GCTC-2 CTGG-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290202|gb|AE003422.1|AE003422 Drosophila melanogaster genomic scaffold 142000013386054 section 6 of 35, complete sequence
Position Repeat Coverage Repeat
9778 GATA * 15 55/60 GATA GATA GATA GATA TATA GATA AATA GATA GATA TATA GATA AATA GATA GATA TATA
22594 TTAT * 5 19/20 TTAT TTAT TTAT TTAT TTAC
27435 ACTA * 6 22/24 ACTA ACTA ACTA ACTA ACTG ACTG
27460 CTGA * 5 19/20 CTGA CTGA CTGA CTGA CTGG
37728 CTGA * 5 18/20 CTGA CTGA CTGA CTGC CTAA
150989 AGCC * 6 22/24 AGCC GGCC AGCC AGCC AGCC AGCG
176406 GTGC * 6 22/24 GTGC GTGC GTGC GTGT GTGT GTGC
183621 TATG * 5 18/20 TATG TATG AATG TTTG TATG
204104 GACA * 5 18/20 GACA GGCA GACA GACG GACA
216824 ATAC * 5 18/20 ATAC ATAC ATAC CTAC ACAC
220327 GAAC * 6 22/24 GAAC GAAC GAGC GAAC GAAA GAAC
222564 CGAG * 5 19/20 CGAG CGTG CGAG CGAG CGAG
224507 GCTC * 5 20/20 GCTC GCTC GCTC GCTC GCTC
239926 AAGA * 6 22/24 AAGA AAGA AAGA AAGA AAGA AACG
265849 TGTA * 6 22/24 TGTA TGTA TGTA TCCA TGTA TGTA
268436 AACA * 5 19/20 AACA AGCA AACA AACA AACA
269867 TGAT * 6 22/24 TGAT TGAT TGAT TGAT TGAC CGAT
276111 CAAT * 5 18/20 CAAT CAAT CAAT TAAT TAAT
-----------------------------------------------------------------------------
Total sequence length......................... 300739
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAGA-1 AACA-1 ATAC-1 AGCC-1 ACTA-1 TATG-1 TTAT-1 TGAT-1
TGTA-1 GAAC-1 GATA-1 GACA-1 GTGC-1 GCTC-1 CAAT-1 CTGA-2
CGAG-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290163|gb|AE003421.1|AE003421 Drosophila melanogaster genomic scaffold 142000013386054 section 5 of 35, complete sequence
Position Repeat Coverage Repeat
43537 GCAG * 7 27/28 GCAG GCAG GCAG GCAG GCAG GCAG GCAC
52435 ATTA * 5 19/20 ATTA ATGA ATTA ATTA ATTA
55221 CCAG * 8 29/32 CCAG CCAG CCAG CCAG CCAG TCAG TCAG TCAG
72206 CGAC * 5 19/20 CGAC CGAC CGAC CGAC CGAG
72903 GTGC * 5 18/20 GTGC GTGC GTGT GTGT GTGC
73270 CCAT * 5 18/20 CCAT CCAT CCAT CCAT CCCA
75049 CCAC * 5 18/20 CCAC CCAG CCAC CCAG CCAC
85496 ATGA * 5 18/20 ATGA ATGG ATGA ATGA ATGG
102960 TGCG * 5 18/20 TGCG TGCG TGCG TGCG TATG
103693 GGCT * 6 22/24 GGCT GGCT GGCT GGCT GGCT GGTG
105609 TGCA * 5 20/20 TGCA TGCA TGCA TGCA TGCA
125133 CAGA * 5 18/20 CAGA CACA CAGA CCGA CAGA
125647 GTCT * 5 18/20 GTCT GTCT ACCT GTCT GTCT
129075 GTGG * 5 19/20 GTGG GTGG GTGG GTAG GTGG
129457 GTAT * 7 26/28 GTAT GTAA GTAT GTAT GTAT GTAG GTAT
132229 GCCA * 6 24/24 GCCA GCCA GCCA GCCA GCCA GCCA
143075 TGCC * 5 19/20 TGCC TGCC TGCC TGCC TGGC
163828 TATG * 5 19/20 TATG TATG CATG TATG TATG
164191 GGAA * 10 36/40 GGAA GGCA GGAA GGAA GGAA GGAA GGAA GGAA GGAA GTTG
165367 TCCG * 5 20/20 TCCG TCCG TCCG TCCG TCCG
166371 TATG * 6 22/24 TATG TATG TATG TATG TATG CAAG
171655 ACAT * 5 20/20 ACAT ACAT ACAT ACAT ACAT
173443 AAGA * 5 19/20 AAGA AAGA AAGA ATGA AAGA
175207 ACTC * 5 18/20 ACTC ACTC ACTC ACAC ACCC
175907 CGAC * 5 19/20 CGAC CGAC CGAA CGAC CGAC
178499 CAAA * 10 36/40 CAAA CAAA CAAA CAAA CAAA CAAA CAAA CCAA CCAA ACAA
190901 GTCA * 5 18/20 GTCA GTCA GCCA GTCA GTCC
193068 AAAT * 5 18/20 AAAT AAAT AAAT AAAC AAGT
195348 ATAC * 6 22/24 ATAC ATAC ATAC ATAC ATAC TCAC
206565 ATAC * 5 18/20 ATAC ATAC ATAA ATAC ATTC
210906 TGGT * 20 72/80 TGGT TGGT TAGT TGGT TGGT TGGT TGGT TGGT TGGT TGGT TGGT TGGT TGGT TAAT TGGT TGGT TGGT TGGT TTGA GGAG
212129 ACAT * 5 18/20 ACAT ATGT ACAT ACAT ACAT
212207 GACG * 8 30/32 GACG GACA GACG GACG GACG GACG GACG GACT
229753 CCGA * 7 26/28 CCGA CCGA CCGA CCGA CCGA CCAA CCGG
244590 GTGG * 5 18/20 GTGG ATGG GTGG ATGG GTGG
246809 ATGG * 5 18/20 ATGG ATGG CTGG ATGG GTGG
249415 CTGG * 5 19/20 CTGG CTGG GTGG CTGG CTGG
254993 TCAG * 6 24/24 TCAG TCAG TCAG TCAG TCAG TCAG
255253 CACC * 5 18/20 CACC CACA CACC CACC CACA
259834 TATG * 5 20/20 TATG TATG TATG TATG TATG
264576 ACTG * 6 22/24 ACTG ACTG ACTG ACTG AGTG AATG
280243 CAGC * 5 18/20 CAGC CATC CAGC CACC CAGC
282492 AAAT * 5 18/20 AAAT ATAT AAAT AAAT ATAT
288431 CTGA * 5 18/20 CTGA ATGA CTGC CTGA CTGA
288460 TGAC * 6 22/24 TGAC TGAA TGAC TGGC TGAC TGAC
294840 GTAT * 5 18/20 GTAT GTAT GTAT GTAT GAGT
-----------------------------------------------------------------------------
Total sequence length......................... 296497
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 46
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-2 AAGA-1 ATAC-2 ATTA-1 ATGA-1 ATGG-1 ACAT-2 ACTG-1
ACTC-1 TATG-3 TGAC-1 TGGT-1 TGCA-1 TGCG-1 TGCC-1 TCAG-1
TCCG-1 GACG-1 GTAT-2 GTGG-2 GTGC-1 GTCA-1 GTCT-1 GGAA-1
GGCT-1 GCAG-1 GCCA-1 CAAA-1 CAGA-1 CAGC-1 CACC-1 CTGA-1
CTGG-1 CGAC-2 CCAT-1 CCAG-1 CCAC-1 CCGA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290119|gb|AE003420.1|AE003420 Drosophila melanogaster genomic scaffold 142000013386054 section 4 of 35, complete sequence
Position Repeat Coverage Repeat
3761 CCGA * 6 22/24 CCGA CTGG CCGA CCGA CCGA CCGA
15805 ACGG * 5 18/20 ACGG ACGG ACGG TTGG ACGG
40862 CACT * 6 23/24 CACT CACT TACT CACT CACT CACT
64869 ATGT * 5 18/20 ATGT ATAT ATGT ATGT ATAT
77391 ACAG * 6 22/24 ACAG ACAG GCAG ACAG ACAG ACAA
78550 CATA * 6 22/24 CATA CATA CATA TATA CATA TATA
95922 TTGT * 5 18/20 TTGT TTGT TTGT TTAT TTGC
97803 TTCA * 7 26/28 TTCA TTCA TTCA TTCA TTCA TTTA TTCG
98117 TGAC * 8 29/32 TGAC TGGC TGAC TGAC TGAC TGAC TGGC TGGC
99741 ATGT * 5 18/20 ATGT ATGT ATGT ACAT ATGT
181540 GACC * 5 18/20 GACC CACC GACC GACC GAGC
188571 ACAT * 5 18/20 ACAT ACAT ATGT ACAT ACAT
224388 TATG * 6 22/24 TATG TATG TACA TATG TATG TATG
234784 CTTA * 5 19/20 CTTA CTTA CTTA CTTA ATTA
261563 CACT * 5 18/20 CACT CACT CACT CACT CAGC
268044 TGTC * 5 19/20 TGTC TGTC TGTC TGTC TGAC
270027 TAAC * 13 47/52 TAAC TAGC TAAC TAAC TAAT TAAC TAAC TAAC TAAC TAAC TAAC TAAC GTGC
272494 GACT * 5 18/20 GACT GACT AACT GACT AACT
-----------------------------------------------------------------------------
Total sequence length......................... 302855
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
ATGT-2 ACAT-1 ACAG-1 ACGG-1 TAAC-1 TATG-1 TTGT-1 TTCA-1
TGAC-1 TGTC-1 GACT-1 GACC-1 CATA-1 CACT-2 CTTA-1 CCGA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290091|gb|AE003419.1|AE003419 Drosophila melanogaster genomic scaffold 142000013386054 section 3 of 35, complete sequence
Position Repeat Coverage Repeat
50581 TATG * 5 18/20 TATG TATG TATG GATG TACG
109614 TCAA * 6 22/24 TCAA TCAA GCAG TCAA TCAA TCAA
113055 GTAT * 5 19/20 GTAT GTAT GTAT GTAT GTAC
134571 TGTT * 5 18/20 TGTT TGTT TATT TGTT TATT
148669 ATGT * 5 18/20 ATGT ATCT ATGT ATGT ATAT
158643 AACA * 5 18/20 AACA ATCA AACA AACT AACA
170535 TTTA * 6 22/24 TTTA TTTA TTTA TTTA TTTT TTTC
174055 TAAA * 5 18/20 TAAA CAAA TAAA TAAA TACA
192701 TATG * 6 22/24 TATG TATT TATG TATG CATG TATG
195145 ACAA * 6 23/24 ACAA ACAA ACAA ACAA ACAA ACAC
199133 CGGA * 5 18/20 CGGA CGGA CGGA CGGA CTGC
206593 ACAT * 5 18/20 ACAT ACAT ATGT ACAT ACAT
210314 TTAT * 5 19/20 TTAT TTAT TTAT TTAT TCAT
234900 TTGG * 5 18/20 TTGG TTGG CTGG TTGG TTTG
257988 CAGA * 8 30/32 CAGA CAGA CAGA CAGA CAGA CAGG CAGA CAGT
267530 CTGT * 5 19/20 CTGT CTGT CCGT CTGT CTGT
276318 TTAT * 5 18/20 TTAT TTCT TTAT TTAT TTTT
277616 TTAA * 5 18/20 TTAA TTAA TTAA ATAA CTAA
-----------------------------------------------------------------------------
Total sequence length......................... 299275
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AACA-1 ATGT-1 ACAA-1 ACAT-1 TAAA-1 TATG-2 TTAA-1 TTAT-2
TTTA-1 TTGG-1 TGTT-1 TCAA-1 GTAT-1 CAGA-1 CTGT-1 CGGA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7290053|gb|AE003418.1|AE003418 Drosophila melanogaster genomic scaffold 142000013386054 section 2 of 35, complete sequence
Position Repeat Coverage Repeat
7892 CAAA * 5 18/20 CAAA CAAA AACA CAAA CAAA
9616 AATC * 5 18/20 AATC AATC AATG TATC AATC
20073 AGTC * 5 18/20 AGTC AGTC ATTT AGTC AGTC
21552 AAGT * 5 18/20 AAGT AAGT CAGA AAGT AAGT
38257 AAAT * 5 18/20 AAAT AAAT AAAT ACAC AAAT
86173 GTAT * 6 22/24 GTAT GCAT GTAT GTAT GTAT GTTT
113393 GTCC * 5 18/20 GTCC GTTC GTCT GTCC GTCC
131677 ATAC * 8 31/32 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAT
134221 TATT * 5 18/20 TATT TATA TATT TATT TAAT
150883 GTAT * 6 22/24 GTAT GTAT GTAT GTAT GTAC GTGT
157154 TCCA * 5 19/20 TCCA TCCA TCCA TCCA TCCC
179030 ACTG * 5 18/20 ACTG ATTG ACTG ACTG GCTG
187291 TTTG * 5 19/20 TTTG TTTG TTTG CTTG TTTG
201435 CAAA * 6 22/24 CAAA CAAA CAAA CAAA CGAG CAAA
214409 TACA * 5 18/20 TACA TACA TACA TATA TATA
225925 TGTT * 5 18/20 TGTT TGCT TGTT TGTT TGTC
232725 TTCC * 5 18/20 TTCC ATCC TTCC TTCC TACC
253245 AGAA * 5 18/20 AGAA AGAA TGAA AGAA AGGA
-----------------------------------------------------------------------------
Total sequence length......................... 299970
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 AATC-1 AAGT-1 ATAC-1 AGAA-1 AGTC-1 ACTG-1 TATT-1
TACA-1 TTTG-1 TTCC-1 TGTT-1 TCCA-1 GTAT-2 GTCC-1 CAAA-2
----------------------------------------------------------------------------
Genomic sequence...
gi|7290018|gb|AE003417.1|AE003417 Drosophila melanogaster genomic scaffold 142000013386054 section 1 of 35, complete sequence
Position Repeat Coverage Repeat
53242 TTTG * 5 18/20 TTTG TTTG TGTT TTTG TTTG
58496 TATT * 5 18/20 TATT TTTT TTTT TATT TATT
69542 CTGA * 5 18/20 CTGA TTGA CTGA CTGA CTGT
85153 GACT * 5 18/20 GACT GACT ACCT GACT GACT
127397 GATC * 5 19/20 GATC GATC GATC GATC GATG
134569 TTAT * 5 18/20 TTAT TGAT TTAT TTAT TTAA
184013 ATAC * 5 18/20 ATAC ATAC AGGC ATAC ATAC
200565 AAAC * 5 18/20 AAAC AAAC AAAC AAAC AGAG
227106 ATAC * 7 26/28 ATAC ATAC ATAC ATAC ATTC ATAC ATAG
278663 TCTA * 5 18/20 TCTA TCTC TCTC TCTA TCTA
306621 TTGG * 5 18/20 TTGG GTGG TTGG GTGG TTGG
-----------------------------------------------------------------------------
Total sequence length......................... 314661
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 11
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAC-1 ATAC-2 TATT-1 TTAT-1 TTTG-1 TTGG-1 TCTA-1 GATC-1
GACT-1 CTGA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7289092|gb|AE002987.1|AE002987 Drosophila melanogaster genomic scaffold 142000013385379, complete sequence
Position Repeat Coverage Repeat
28374 ATAC * 5 18/20 ATAC ATAC ATAC ATAC ATTA
58787 AAAT * 6 22/24 AAAT AAAT AAAT AAGT AAAT AAAA
69389 TGTA * 5 20/20 TGTA TGTA TGTA TGTA TGTA
-----------------------------------------------------------------------------
Total sequence length......................... 71090
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 3
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 ATAC-1 TGTA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7289791|gb|AE002991.1|AE002991 Drosophila melanogaster genomic scaffold 142000013385979, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------
Total sequence length......................... 7017
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------
Genomic sequence...
gi|7316106|gb|AE002593.1|AE002593 Drosophila melanogaster genomic scaffold 142000013386053, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------
Total sequence length......................... 0
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------
Genomic sequence...
gi|7293636|gb|AE003513.1|AE003513 Drosophila melanogaster genomic scaffold 142000013386053 section 30 of 30, complete sequence
Position Repeat Coverage Repeat
16002 GATC * 6 22/24 GATC AATC GATC GATC GATC GACC
16368 ACAT * 5 18/20 ACAT ACAT ACAT ATGT ACAT
46192 ACAT * 5 18/20 ACAT ACAT ACAT ACAT ATGT
53127 GCCA * 7 26/28 GCCA GCCA GCCA GCCA GCCA GCCA TCCG
54602 CTGT * 5 18/20 CTGT ATGT CTGT CTGT CTGC
54636 CTCA * 11 40/44 CTCA CTCA CTTA CTCA CTCA CTCA CTCA CTCA CTTA CTCG CTCG
63090 AAAT * 6 23/24 AAAT AAAT AAAT AAAT AAAT AAAA
72904 ATAC * 8 29/32 ATAC ATAC ATAC ATAC ATAC ATAC ATTT ATAT
74002 TACA * 5 18/20 TACA TACA TATA TAGA TACA
75517 CATA * 5 18/20 CATA CATA CATA TGTA CATA
75981 AGGG * 5 18/20 AGGG AGGG AGGG GGGG GGGG
95323 ACAT * 5 18/20 ACAT ACAT ACAT GCAT ACAC
96795 AAAT * 5 18/20 AAAT AAAT ATAT AAAT ATAT
117499 ATGT * 7 28/28 ATGT ATGT ATGT ATGT ATGT ATGT ATGT
118166 TACA * 6 22/24 TACA TACA TACA TACA TACA TATG
121933 CTAT * 7 27/28 CTAT CTAT CTAT CTAT CTAT CTAT CTAC
129297 TATG * 5 18/20 TATG TATG TATG TATT AATG
141599 GACA * 6 22/24 GACA GACG GATA GACA GACA GACA
142177 TTGT * 5 18/20 TTGT TTGT TTTT TTTT TTGT
146201 TATG * 5 19/20 TATG TATG TATG TATG TGTG
150879 GAAA * 5 18/20 GAAA GTAA GAAA GTAA GAAA
152727 ATAC * 5 18/20 ATAC ATAC ATAC ATAT ATAA
156081 TAAA * 6 22/24 TAAA TAAA TAAT TAAA TAAA TAAT
161874 GCGA * 5 18/20 GCGA GCGA GCGA GTGA GTGA
169640 TTTA * 5 18/20 TTTA TTTA TGTT TTTA TTTA
180474 AGTT * 8 30/32 AGTT GGTA AGTT AGTT AGTT AGTT AGTT AGTT
197958 TATG * 5 18/20 TATG TATG TAAA TATG TATG
-----------------------------------------------------------------------------
Total sequence length......................... 207355
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 27
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-2 ATAC-2 ATGT-1 AGTT-1 AGGG-1 ACAT-3 TAAA-1 TATG-3
TACA-2 TTTA-1 TTGT-1 GAAA-1 GATC-1 GACA-1 GCGA-1 GCCA-1
CATA-1 CTAT-1 CTGT-1 CTCA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7293579|gb|AE003512.1|AE003512 Drosophila melanogaster genomic scaffold 142000013386053 section 29 of 30, complete sequence
Position Repeat Coverage Repeat
303 TGAC * 5 18/20 TGAC AGAC TGAC TAAC TGAC
325 ACTG * 5 18/20 ACTG ACTC ACTG ACTA ACTG
349 ACTG * 8 30/32 ACTG ACTA ACTG ACTG ACTG ACTG ACTG ACTT
10864 CCAT * 11 40/44 CCAT CCAT CCAT CCAT CCAT CCAT CCAA GCGT CCAT CCAT TCAT
18416 CACC * 5 18/20 CACC CACC CACC AACC AACC
27209 ACTG * 5 18/20 ACTG ACTA ACTG ACTG AATG
27230 CTGA * 5 18/20 CTGA CTGT CTGA CTGA CTGG
29316 GCTG * 5 18/20 GCTG GCTG GCTG GTTG GTTG
38560 AGTC * 6 22/24 AGTC AGTC AGTC AGTC AGTC AGCT
63319 CTGG * 8 30/32 CTGG ATGG TTGG CTGG CTGG CTGG CTGG CTGG
69190 CATA * 7 27/28 CATA CATA CATA CATA CATA CATA CATG
101627 TGTT * 6 23/24 TGTT TGTT TGTT TGTT TGTT TGTG
127566 TACA * 6 23/24 TACA TTCA TACA TACA TACA TACA
139476 ATCC * 9 34/36 ATCC ATCC ATCC ATCC ATCC ATCC ATCC ATCT ATCT
155147 GATG * 11 40/44 GATG GATG GACG GATG GATG GACG GATG GATG GATG GATG GTCG
156683 ATAG * 5 19/20 ATAG ATAG ATAG ATAG ATAT
162197 GTAT * 5 18/20 GTAT GTAT GTAT GTAT ATAC
173026 TTTG * 5 18/20 TTTG CTTG CTTG TTTG TTTG
173101 TTAT * 5 18/20 TTAT TTAT TTAT TTAT GTTT
198605 TAAA * 5 18/20 TAAA TAAG TAAA TAAA TGAA
207863 TACA * 5 18/20 TACA TACG TGCA TACA TACA
209825 TACA * 5 18/20 TACA TACA TACA TACA TATG
211796 CATA * 6 22/24 CATA CATA CATA TGTA CATA CATA
212002 TACA * 5 19/20 TACA TACA TACA TACG TACA
218809 TATG * 5 18/20 TATG TATG TATG TATT TAGG
233241 TATG * 5 19/20 TATG TATA TATG TATG TATG
238799 ATAC * 6 22/24 ATAC ACTC ATAC ATAC ATAC ATAC
242681 ACAT * 6 23/24 ACAT GCAT ACAT ACAT ACAT ACAT
249012 AATT * 6 22/24 AATT CATT AAAT AATT AATT AATT
249351 AAAT * 5 18/20 AAAT AAAT AAAT TAAT AACT
253603 AGCC * 6 22/24 AGCC AGCC AACC AGCC AGCG AGCC
278089 TATG * 5 19/20 TATG TATG TATG TATG TATA
289610 GGCT * 9 33/36 GGCT GGCT GGCT GGCC GGCT GGCT GGCT GGCC GGGT
291806 TGTA * 6 22/24 TGTA TGTA TGTA TGTA CATA TGTA
-----------------------------------------------------------------------------
Total sequence length......................... 301656
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 34
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 AATT-1 ATAG-1 ATAC-1 ATCC-1 AGTC-1 AGCC-1 ACAT-1
ACTG-3 TAAA-1 TATG-3 TACA-4 TTAT-1 TTTG-1 TGAC-1 TGTA-1
TGTT-1 GATG-1 GTAT-1 GGCT-1 GCTG-1 CATA-2 CACC-1 CTGA-1
CTGG-1 CCAT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7293536|gb|AE003511.1|AE003511 Drosophila melanogaster genomic scaffold 142000013386053 section 28 of 30, complete sequence
Position Repeat Coverage Repeat
842 CCAC * 5 18/20 CCAC CCAG CCAC CCAG CCAC
12695 ATAA * 6 22/24 ATAA ATAA ATAA ATAA ATAA ATGT
31061 CATT * 5 19/20 CATT CACT CATT CATT CATT
71568 ATAC * 6 22/24 ATAC ATAC ATAC ATAT ATAC ATAT
73944 TGGT * 5 18/20 TGGT CGGT CGGT TGGT TGGT
88444 CAAA * 5 18/20 CAAA CAAA AACA CAAA CAAA
95428 TACA * 5 18/20 TACA TACA TACA TATG TACA
98122 TTTA * 5 18/20 TTTA TTTA TTTA TTTT TTTT
104949 ATAC * 5 18/20 ATAC ATAT GTAC ATAC ATAC
105612 TATG * 5 18/20 TATG TATG TATG TGTA TATG
128194 CCAC * 5 18/20 CCAC CAAC CCAC CCAC CTAC
141317 CCAA * 7 26/28 CCAA CCAA CCAA CCAA CCAA CCAA GCAC
146018 GGTG * 6 22/24 GGTG GGTG GTTG GGTG GTTG GGTG
154297 TTTA * 5 18/20 TTTA TATA TTTA TTTA TTAA
172185 ATAG * 5 18/20 ATAG ATAG ATAT ATAG ATAT
175081 GGTC * 8 30/32 GGTC TGTC GGTC GGTC GGTC GGTC GGTC GGTG
233593 ATGG * 15 54/60 ATGG ATGG ATGG ATGG ATGG ATGG ATGG GTGG ATGG ATGG ATGG ATGG TTGG ATGG GATA
234618 CTGT * 5 18/20 CTGT CTGT CTGT CTGC CTGG
236551 TATG * 6 22/24 TATG TACA TATG TATG TATG TATG
237699 CCAG * 5 18/20 CCAG CCAG CCAG CCAG TCAT
238400 AAAT * 5 18/20 AAAT AAAT AAAT AAAT AGAA
238860 TTGA * 5 18/20 TTGA TTGT ATGA TTGA TTGA
246083 TATT * 5 20/20 TATT TATT TATT TATT TATT
250375 TTGG * 5 19/20 TTGG TTGG TTGG TTGG TCGG
252531 TACA * 5 19/20 TACA TACA TACG TACA TACA
269858 ATAC * 5 19/20 ATAC ATAC ATAC ATAC ATAT
273955 TATG * 7 26/28 TATG TATG TATG TATG TATG TATG TGTT
284891 ATGT * 8 30/32 ATGT ACAT ATGT ATGT ATGT ATGT ATGT ATGT
291379 AAAT * 9 34/36 AAAT AGAT AAAT AAAT AAAT AAAT AGAT AAAT AAAT
293630 GTTT * 10 36/40 GTTT GTTT GTTT GTTT GTTT GCTT GTTT GTTT GCTT CTTG
301493 CATA * 5 18/20 CATA TGTA CATA CATA CATA
305742 TGTA * 11 41/44 TGTA TGTA TGTA CGTA TGAA TGTA TGTA CGTA TGTA TGTA TGTA
306981 ATAC * 5 18/20 ATAC ATAC ATAC ATAC GTAT
310957 ACAA * 5 18/20 ACAA AAAA ACAA ACAA AAAA
311610 GAAC * 7 27/28 GAAC GAAC GAAC GAAC GAAC GAAC GAAA
319628 ACCC * 5 18/20 ACCC AACC ACCC AACC ACCC
324115 ATGG * 5 20/20 ATGG ATGG ATGG ATGG ATGG
328617 GCCT * 11 42/44 GCCT GACT GCCT GCCT GCCT GCCT GCCT GCCT GCCT GCCT GCCC
333704 ACCA * 5 19/20 ACCA ACCA ACCA AACA ACCA
335923 CCAA * 10 36/40 CCAA CCAA CCAA CCAA CCAA CCAA CCAA CCAT CCAG GCAT
338004 AGGC * 5 19/20 AGGC AGGC AGGC GGGC AGGC
341021 TACA * 5 18/20 TACA TACA TACA TACG GACA
341143 CCAG * 7 26/28 CCAG CCAG CCAG CCAG CTAG CCAG CCGG
341398 CGGA * 5 18/20 CGGA TGGA CGGA TGGA CGGA
-----------------------------------------------------------------------------
Total sequence length......................... 343711
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 44
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-2 ATAA-1 ATAG-1 ATAC-4 ATGT-1 ATGG-2 AGGC-1 ACAA-1
ACCA-1 ACCC-1 TATT-1 TATG-3 TACA-3 TTTA-2 TTGA-1 TTGG-1
TGTA-1 TGGT-1 GAAC-1 GTTT-1 GGTG-1 GGTC-1 GCCT-1 CAAA-1
CATA-1 CATT-1 CTGT-1 CGGA-1 CCAA-2 CCAG-2 CCAC-2
----------------------------------------------------------------------------
Genomic sequence...
gi|7293504|gb|AE003510.1|AE003510 Drosophila melanogaster genomic scaffold 142000013386053 section 27 of 30, complete sequence
Position Repeat Coverage Repeat
57822 TGTA * 5 18/20 TGTA TGAG TGTA TGTA TGTA
59283 ATGT * 5 18/20 ATGT ATGT ATGT ACAT ATGT
80016 TATG * 5 19/20 TATG TATG TATG TATG CATG
83220 AATA * 5 18/20 AATA AATA AATA AAAA CATA
113146 TATG * 5 18/20 TATG TATA TATG TATG TATA
113753 AAAC * 6 22/24 AAAC AAAC AAAC AAAC AAAA CAAC
114267 TGTT * 5 18/20 TGTT TGTC TGTT TGTT TGTC
132358 ACAT * 5 18/20 ACAT ACAT ACAT ACAT TAAT
145277 CCAA * 5 18/20 CCAA CCAA CCAA CCGC CCAA
145498 ACCA * 8 29/32 ACCA CCCA ACCA ACCA ACCA ACCA ACCA CCCG
149520 GGTG * 5 18/20 GGTG GGCG CGTG GGTG GGTG
151965 TGTT * 5 19/20 TGTT TGTT TGTT TGTT TGTG
176336 ATGG * 6 23/24 ATGG ATGG ATGG ATGG ATGG ATAG
176655 TTGT * 5 18/20 TTGT TTGT TTGT TTAT TTGC
191977 ATGT * 5 18/20 ATGT ATGT TTGT ATTT ATGT
192552 CATA * 5 18/20 CATA CATA CATA TATA TATA
198731 TATG * 6 23/24 TATG TATG TATG TATG TATG TATA
214783 TTAT * 5 18/20 TTAT TTAT TTTT TTTT TTAT
216698 GTTT * 6 22/24 GTTT GTTT GTTT GCTT GTTG GTTT
218943 TATG * 6 22/24 TATG TACA TATG TATG TATG TATG
251780 AGCT * 5 18/20 AGCT AGCT AGCT AGCT AGGA
257486 TACA * 5 18/20 TACA TACA TACA TATA TATA
261358 ACGG * 5 18/20 ACGG ACAG ACGA ACGG ACGG
264345 ATGT * 5 18/20 ATGT ATGG ATGT ATGT ATGA
266563 TCAG * 5 18/20 TCAG TCAG TCAG TCAA TCAT
281249 GAGT * 5 18/20 GAGT GAGT GAGT GTGT GTGT
287532 GCTG * 5 18/20 GCTG GCTG CCTG CCTG GCTG
292748 TTTC * 5 18/20 TTTC TTTT TTTC TTTT TTTC
-----------------------------------------------------------------------------
Total sequence length......................... 298477
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 28
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAC-1 AATA-1 ATGT-3 ATGG-1 AGCT-1 ACAT-1 ACGG-1 ACCA-1
TATG-4 TACA-1 TTAT-1 TTTC-1 TTGT-1 TGTA-1 TGTT-2 TCAG-1
GAGT-1 GTTT-1 GGTG-1 GCTG-1 CATA-1 CCAA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7293467|gb|AE003509.1|AE003509 Drosophila melanogaster genomic scaffold 142000013386053 section 26 of 30, complete sequence
Position Repeat Coverage Repeat
9993 ATTC * 5 19/20 ATTC ATTC ACTC ATTC ATTC
11193 ATGT * 6 22/24 ATGT ATGT ATGT ATGT ATGT ATTC
25019 GGAT * 5 19/20 GGAT GGAT GAAT GGAT GGAT
39622 TGTT * 5 19/20 TGTT TGTT TGTT TATT TGTT
63785 TGAC * 5 18/20 TGAC CGAC TGAC TGAC TGAA
71323 TACA * 5 18/20 TACA TATG TACA TACA TACA
71797 CACT * 7 26/28 CACT CACT CACT CACT CACT CGCT CACC
82435 TAAA * 6 23/24 TAAA TAAA TAAA TAAA TAAA TACA
94677 TGAA * 5 18/20 TGAA TGAC TGAC TGAA TGAA
95507 CATC * 5 18/20 CATC CATC CATC CGTC AATC
100604 TCGG * 6 22/24 TCGG TCGG TCGG TCGG TCGG TTAG
106783 TACA * 6 22/24 TACA CACA TACA TACA TACA TATA
110318 CAAG * 5 18/20 CAAG CCAG TAAG CAAG CAAG
127987 TTGT * 5 18/20 TTGT TTGT TTGT TTGT TTAC
132514 TATG * 9 33/36 TATG TGTG TATG TATG TATG TATG TATG TGTG TGTG
139311 CATA * 6 22/24 CATA CAAA CATA CATA CATA CAAA
139700 GTCA * 5 18/20 GTCA GCCA GTCA GCCA GTCA
171014 TACA * 5 18/20 TACA TACA TACA TACA TAGG
174344 ATGT * 5 18/20 ATGT ATGT ATGT ATGT AGTT
189292 GCCT * 8 29/32 GCCT GCCT GCCT GCCT GCCT GCCC GTCT GTCT
191211 ACAT * 5 18/20 ACAT ATGT ACAT ACAT ACAT
192621 GAGT * 5 19/20 GAGT GAGT GAGT GAGT AAGT
195044 TGCA * 5 18/20 TGCA CGCA TGCA TACA TGCA
196501 GGAT * 5 18/20 GGAT GGAT GGAT AGAT GGAG
211042 TGGT * 5 18/20 TGGT TGGA TGGT TGGC TGGT
215979 ATTT * 6 22/24 ATTT TTTT ATTT ATTT ATTT TTTT
216742 GACG * 8 30/32 GACG GACG GACG GACG GACG GACG GACG TTCG
226788 GATC * 9 35/36 GATC GATC GATC GATC GATC GATC GATC GTTC GATC
229867 TCCA * 5 18/20 TCCA TCCA GCCG TCCA TCCA
238398 TACA * 6 22/24 TACA TACA TACA TACA TATA TATA
261908 GCTG * 5 20/20 GCTG GCTG GCTG GCTG GCTG
265904 TACA * 6 22/24 TACA TACA TATA TACA TATA TACA
268769 GTAT * 5 18/20 GTAT GTAT GTAT ATAT ATAT
279096 TACA * 6 22/24 TACA TATG TACA TACA TACA TACA
291014 GATG * 9 33/36 GATG GATG GATG AATG GATG GATG GATG GATG GGGG
296533 ATGG * 6 23/24 ATGG ATGG ATGG ATGG ATGG TTGG
-----------------------------------------------------------------------------
Total sequence length......................... 303819
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 36
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
ATTT-1 ATTC-1 ATGT-2 ATGG-1 ACAT-1 TAAA-1 TATG-1 TACA-6
TTGT-1 TGAA-1 TGAC-1 TGTT-1 TGGT-1 TGCA-1 TCGG-1 TCCA-1
GATG-1 GATC-1 GAGT-1 GACG-1 GTAT-1 GTCA-1 GGAT-2 GCTG-1
GCCT-1 CAAG-1 CATA-1 CATC-1 CACT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7293431|gb|AE003508.1|AE003508 Drosophila melanogaster genomic scaffold 142000013386053 section 25 of 30, complete sequence
Position Repeat Coverage Repeat
1220 TTTG * 6 22/24 TTTG TTTG TTTG TTCG TTTG TTGG
9585 TTAT * 5 18/20 TTAT TTAT TTAT TTGT TTGT
21646 TAAA * 5 18/20 TAAA TATA TATA TAAA TAAA
22689 ACAT * 6 24/24 ACAT ACAT ACAT ACAT ACAT ACAT
33577 ATTT * 5 20/20 ATTT ATTT ATTT ATTT ATTT
36278 ATTT * 5 18/20 ATTT ATTT ATTT TTTT TTTT
37615 CAGC * 8 29/32 CAGC CGGC CAGC CAGA CAGC CAGC CAGC CAGG
41933 TTTA * 5 19/20 TTTA TATA TTTA TTTA TTTA
55982 ATGT * 5 19/20 ATGT ATAT ATGT ATGT ATGT
75504 TATT * 6 23/24 TATT TATT TATT TATT TATT TATA
88905 ATAA * 5 18/20 ATAA ATAA ATAA ATAA GTTA
91536 CGAG * 5 18/20 CGAG TGAG CGAA CGAG CGAG
91556 TGAG * 5 18/20 TGAG TGAG TGAG TGAG TGCA
92742 AGCC * 5 18/20 AGCC AGCT AGCC AGCC AGTC
96851 TTAT * 5 18/20 TTAT TTAT TTGT TTAT TAAT
98642 TTAT * 5 18/20 TTAT TTAT TTAT TTTT TGAT
103580 ATCG * 6 23/24 ATCG ATCG ATGG ATCG ATCG ATCG
106107 ATCC * 6 22/24 ATCC ATCC GTCC ATCC ATCC ATCT
138998 CGGA * 5 18/20 CGGA CGGA CAGG CGGA CGGA
157222 ACCG * 5 19/20 ACCG ACCA ACCG ACCG ACCG
159735 TTGT * 5 18/20 TTGT TTGT TTGT TTGC TTGC
161628 ATCT * 7 26/28 ATCT ATCT ATGT ATCT ATCT ATCT ATCG
164232 GGGT * 6 22/24 GGGT GAGT GGGT GAGT GGGT GGGT
172721 TTGT * 6 22/24 TTGT TTGT TGGT TTGT TTGT TTGC
173518 TATG * 5 19/20 TATG CATG TATG TATG TATG
178509 ATAA * 5 18/20 ATAA ATAA ATAA ATAC AAAA
217683 TATG * 5 18/20 TATG TATG TATA TATG TATA
225594 CAAC * 5 18/20 CAAC CAAC CAAC AAAC AAAC
247151 GGAT * 5 18/20 GGAT GGGT GGAT GAAT GGAT
248720 ATGT * 5 18/20 ATGT ATCT ATGT ATGT ATCT
254433 ACAT * 6 22/24 ACAT GTAT ACAT ACAT ACAT ACAT
288252 GATG * 5 18/20 GATG GCTG GATG GCTG GATG
289684 CTGT * 6 22/24 CTGT CTGC CTGT CTGT CTGT GTGT
291003 GTAT * 12 44/48 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT ATAT TTGG
291401 TATG * 5 18/20 TATG TATG TATG TATG TTAG
291708 CCTT * 5 20/20 CCTT CCTT CCTT CCTT CCTT
297384 GCCA * 5 18/20 GCCA GCCA GCCA GCCA GTAA
300533 TCCA * 5 18/20 TCCA ACCA TCCA TCCA TTCA
-----------------------------------------------------------------------------
Total sequence length......................... 300919
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 38
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
ATAA-2 ATTT-2 ATGT-2 ATCT-1 ATCG-1 ATCC-1 AGCC-1 ACAT-2
ACCG-1 TAAA-1 TATT-1 TATG-3 TTAT-3 TTTA-1 TTTG-1 TTGT-2
TGAG-1 TCCA-1 GATG-1 GTAT-1 GGAT-1 GGGT-1 GCCA-1 CAAC-1
CAGC-1 CTGT-1 CGAG-1 CGGA-1 CCTT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7293394|gb|AE003507.1|AE003507 Drosophila melanogaster genomic scaffold 142000013386053 section 24 of 30, complete sequence
Position Repeat Coverage Repeat
13604 GTAT * 5 18/20 GTAT GTGT GTGT GTAT GTAT
15737 ATGT * 5 18/20 ATGT ATGT ATAT ATGT ATGG
16510 TTGC * 5 18/20 TTGC TTGC ATTC TTGC TTGC
20195 TTTA * 5 18/20 TTTA TTTA TTTA TTTT TTTT
24041 ATAC * 9 33/36 ATAC AAAT ATAC ATAC ATAC ATAC ATAC ATAC ATAT
27105 ATAC * 5 18/20 ATAC ATAC ATAC ACAC ACAC
28181 CGGA * 5 19/20 CGGA CGGA CGGA CGGA CGGT
64008 AGTC * 5 18/20 AGTC AGTC AGTG AGTC AGAC
70087 TTGT * 5 20/20 TTGT TTGT TTGT TTGT TTGT
72590 TATG * 5 18/20 TATG TGTG TATG TATA TATG
80045 TATG * 6 23/24 TATG TACG TATG TATG TATG TATG
82892 TTTA * 5 18/20 TTTA TTTA TTTA TTTA TTAC
88396 ATCA * 6 22/24 ATCA ATCA ATCA ATCG TTCA ATCA
88421 TCAA * 6 23/24 TCAA TAAA TCAA TCAA TCAA TCAA
94505 TTAT * 5 19/20 TTAT TTAT TTAT TTAT TTAG
103137 CGGA * 5 18/20 CGGA CGGA CGGA GGGG CGGA
106224 GAAT * 7 26/28 GAAT GAAT GAAT GACT GAGT GAAT GAAT
111877 TATT * 5 18/20 TATT TATT TATA TATT TGTT
112760 CCCA * 5 18/20 CCCA ACCA CCCA ACCA CCCA
126352 TGAT * 6 24/24 TGAT TGAT TGAT TGAT TGAT TGAT
127185 ACCA * 5 18/20 ACCA ACCA ACCA ACCA CCAA
135957 ACTG * 6 22/24 ACTG ACTG ATTG ACTG ACTG AATG
136006 CTGA * 17 63/68 CTGA CTAA CTGA CTGA CCGA CTGA CTGA CGGA CTGA CTGA CTGA CTGA CTGA TTGA TTGA CTGA CTGA
139965 TTTA * 5 18/20 TTTA TTTA TTTA TTTG TTAA
144360 CGGA * 8 29/32 CGGA CGGT CGGA CGGA CGGA CGGA CAGA CAGA
154118 CTGG * 5 18/20 CTGG CTTC CTGG CTGG CTGG
161896 ACAA * 5 18/20 ACAA ACAA AAAA TCAA ACAA
199341 TACA * 5 18/20 TACA TACA AACA TATA TACA
252706 GCGA * 8 29/32 GCGA GTAA GCGA GCGA GCGA GCGA GCGA GCCA
252995 AGAT * 6 22/24 AGAT CGAT AGAT AGAT AGCT AGAT
256433 GTTT * 6 22/24 GTTT GGTT GTTT GTTT GTTT GATT
274073 TATG * 5 18/20 TATG TACA TATG TATG TATG
277326 TGCG * 6 22/24 TGCG TGAG TGCG TGCG TGCG TGAG
285854 TACA * 5 18/20 TACA TACA TACA TATG TACA
289130 ACAT * 5 18/20 ACAT ACAT ACAA ACAT ATAT
-----------------------------------------------------------------------------
Total sequence length......................... 297165
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 35
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
ATAC-2 ATGT-1 ATCA-1 AGAT-1 AGTC-1 ACAA-1 ACAT-1 ACTG-1
ACCA-1 TATT-1 TATG-3 TACA-2 TTAT-1 TTTA-3 TTGT-1 TTGC-1
TGAT-1 TGCG-1 TCAA-1 GAAT-1 GTAT-1 GTTT-1 GCGA-1 CTGA-1
CTGG-1 CGGA-3 CCCA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7293355|gb|AE003506.1|AE003506 Drosophila melanogaster genomic scaffold 142000013386053 section 23 of 30, complete sequence
Position Repeat Coverage Repeat
9379 ACAA * 5 18/20 ACAA ACAA ATAA ACAA ACAG
10711 GTAA * 5 18/20 GTAA GTAA GTAA GTAA TTTA
14123 TGTT * 5 18/20 TGTT TGTT TGTT TGTT TTCT
36558 TACA * 6 22/24 TACA TACA TACA TACA TATA TGCA
38887 ATAA * 5 18/20 ATAA ATAA ATAG ATAA ATAC
95461 ATGA * 6 22/24 ATGA ATAA ATGA ATGA ATGA ATGG
145671 AAAC * 5 18/20 AAAC AAAC AAAA AAAA AAAC
148740 TACA * 5 18/20 TACA TACA TACA TACA TATG
165698 TACA * 5 18/20 TACA TACA TACA TATA TATA
171779 ATGT * 5 19/20 ATGT ATGT ATGT ATGT ATAT
180353 ATGT * 6 22/24 ATGT ATGT ATGT ATGT ATGC ATCT
180543 ATGG * 6 23/24 ATGG ATGG ATGG ATGG TTGG ATGG
184635 GGAT * 6 22/24 GGAT GAAT GGAT GGAT GGTT GGAT
184940 ACAT * 5 18/20 ACAT ACGT ACAT ACAT ACGT
185390 TGAG * 8 30/32 TGAG TGAG TGAG TGAG TGAG TGAG TGTG TGAC
215467 GAGG * 5 18/20 GAGG GAGG GAGA GAGG GGGG
220135 GTCA * 6 22/24 GTCA GCCA GTCA GCCA GTCA GTCA
221876 ACAT * 6 22/24 ACAT ACAT ACAT ACAT ATAC ACAT
221995 ACTG * 6 23/24 ACTG ACTG ACTG ACTG ACTG AATG
239944 AGAA * 5 18/20 AGAA AGAA AGCA AGAA ACAA
261579 CTCG * 6 22/24 CTCG CTCG CTCG CTCG CTCT CTCT
261773 CATA * 7 26/28 CATA CATA TCTA CATA CATA CATA CATA
271321 TTGT * 6 22/24 TTGT TTGT TTGT TTGT TTGT TGCT
-----------------------------------------------------------------------------
Total sequence length......................... 300994
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 23
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAC-1 ATAA-1 ATGA-1 ATGT-2 ATGG-1 AGAA-1 ACAA-1 ACAT-2
ACTG-1 TACA-3 TTGT-1 TGAG-1 TGTT-1 GAGG-1 GTAA-1 GTCA-1
GGAT-1 CATA-1 CTCG-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7293335|gb|AE003505.1|AE003505 Drosophila melanogaster genomic scaffold 142000013386053 section 22 of 30, complete sequence
Position Repeat Coverage Repeat
1535 AAAT * 5 18/20 AAAT AAAT AAAT AAAT TATT
2626 TATG * 5 18/20 TATG TATG TATG TATG TACA
16054 CAAT * 7 26/28 CAAT CAAT CAAT CAAT CTAT CAAT CAGT
22227 AAAT * 5 18/20 AAAT AAAT AACT AAAG AAAT
37517 ATTG * 5 18/20 ATTG ATTG ACTG ATTG ATTA
73568 TATT * 5 18/20 TATT TATT TATT TTTT TTTT
89958 TAAA * 5 18/20 TAAA TTAA TAAA TAAA TCAA
130815 ATAA * 5 18/20 ATAA ATCA ATAA TTAA ATAA
160934 AAAC * 5 18/20 AAAC AAAA AAAC AAAC AAAT
170029 TTAT * 5 18/20 TTAT TTAT TTAT ATAT TTTT
173223 CCCA * 5 18/20 CCCA ACCA CCCA ACCA CCCA
205028 GCCA * 6 24/24 GCCA GCCA GCCA GCCA GCCA GCCA
225927 GTTG * 7 26/28 GTTG GTTG GTTG GTTG GTTG GTTA GATG
230482 GTCA * 5 19/20 GTCA GTCA GGCA GTCA GTCA
234300 CAGT * 7 26/28 CAGT CAGT CAGT CAGT CAGT CAGC TAGT
243344 CGAC * 6 22/24 CGAC CGAC CAAC CGAC CAAC CGAC
243368 CAAC * 5 18/20 CAAC CGAC CAAC CGAC CAAC
243388 CGAC * 5 18/20 CGAC CAAC CGAA CGAC CGAC
256423 AGAT * 5 18/20 AGAT GGAT AGAA AGAT AGAT
257494 GACT * 6 22/24 GACT GACT AACT GACT AACT GACT
257519 ACTG * 5 18/20 ACTG ACTG ACTG AAGG ACTG
261311 GCCT * 6 22/24 GCCT GCCT GCTT GGCT GCCT GCCT
261370 CCCA * 5 18/20 CCCA GCCA CCCA ACCA CCCA
263016 AGTG * 5 18/20 AGTG AGTG AGTG TGTG TGTG
264586 TTAT * 5 18/20 TTAT TTAT TTAT TTAT TTCG
264811 ATAC * 5 19/20 ATAC ATAC ATAC ATAT ATAC
266132 TGGG * 5 18/20 TGGG TGTG TGGG TGTG TGGG
289156 CCAG * 8 29/32 CCAG CCAG CCAT CCAG CCAG CCAT CCAG CCAT
299829 ATAC * 5 18/20 ATAC ATAC ATAC ATAC GTAT
311410 TGTA * 5 18/20 TGTA TGTA CGTA TGTA TCTA
-----------------------------------------------------------------------------
Total sequence length......................... 314113
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 30
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-2 AAAC-1 ATAA-1 ATAC-2 ATTG-1 AGAT-1 AGTG-1 ACTG-1
TAAA-1 TATT-1 TATG-1 TTAT-2 TGTA-1 TGGG-1 GACT-1 GTTG-1
GTCA-1 GCCA-1 GCCT-1 CAAT-1 CAAC-1 CAGT-1 CGAC-2 CCAG-1
CCCA-2
----------------------------------------------------------------------------
Genomic sequence...
gi|7293302|gb|AE003504.1|AE003504 Drosophila melanogaster genomic scaffold 142000013386053 section 21 of 30, complete sequence
Position Repeat Coverage Repeat
5782 AATA * 5 19/20 AATA AATA AATA AACA AATA
70434 GCTG * 5 18/20 GCTG GCTG GCTG GCTG GCAT
81667 GTTT * 5 18/20 GTTT GTTT GTTT GTTT GTCA
89603 TACA * 9 33/36 TACA TACA TATA TACA TACA TACA TACA TATA TATA
91007 CATA * 5 19/20 CATA CATA CATA CATA CATG
102474 ACAT * 5 19/20 ACAT ACGT ACAT ACAT ACAT
112874 TTCA * 5 18/20 TTCA TTCA TTTA TGCA TTCA
130186 TACA * 5 18/20 TACA TACA TACA TATG TACA
136030 GTTG * 5 18/20 GTTG GGTG GTTG GTTA GTTG
186669 TACA * 5 18/20 TACA TACA TATG TACA TACA
205857 TAAA * 5 18/20 TAAA TAAA TAAA TATA AAAA
234923 TTGA * 10 36/40 TTGA TTGA TTGG ATGA TTGA TTGA TTGA CTGA TTGA GTGA
278030 AATA * 5 18/20 AATA AATC AATA AATA AGTA
281447 AAAT * 5 19/20 AAAT AAAT AAAT GAAT AAAT
-----------------------------------------------------------------------------
Total sequence length......................... 298536
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 AATA-2 ACAT-1 TAAA-1 TACA-3 TTGA-1 TTCA-1 GTTT-1
GTTG-1 GCTG-1 CATA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7293251|gb|AE003503.1|AE003503 Drosophila melanogaster genomic scaffold 142000013386053 section 20 of 30, complete sequence
Position Repeat Coverage Repeat
6670 GCTG * 7 26/28 GCTG GCTG GCTG GCTG GCTG GCTG TTTG
7914 TTTG * 5 18/20 TTTG TTAG TTTG TTAG TTTG
34726 GGAG * 5 18/20 GGAG AGGG GGAG GGAG GGAG
40667 TACA * 5 18/20 TACA TATG TACA TACA TACA
55928 TACA * 5 18/20 TACA TATA TACA TACA TATA
67119 TTAT * 5 18/20 TTAT TTAT TTAT TTAT AAAT
80760 CAAA * 5 18/20 CAAA CAAA CAAA CAAA AATA
83660 TTTA * 5 18/20 TTTA TTTA TTTA TTTT TTTT
91372 GGAT * 5 18/20 GGAT GGAT GGAT GCAC GGAT
112702 AGTC * 5 18/20 AGTC TGTA AGTC AGTC AGTC
115613 TTCA * 5 19/20 TTCA TTCA TTCA GTCA TTCA
122943 ATAA * 7 27/28 ATAA ATAA ATAA GTAA ATAA ATAA ATAA
124193 TTTG * 6 22/24 TTTG TTTG TTTG TTTG TTTG TCCG
137141 TACA * 5 18/20 TACA TATA GACA TACA TACA
137171 TACA * 5 18/20 TACA TACA TACA TACA TATC
139541 CCAG * 5 18/20 CCAG CTAG CCAG CTAG CCAG
139573 CCAA * 5 18/20 CCAA CCAA GCAA CCAA CCGA
141361 GACC * 5 20/20 GACC GACC GACC GACC GACC
176107 TTAT * 5 18/20 TTAT TTAT TTAT TATT TTAT
178896 TAAA * 5 18/20 TAAA TAAA TAAA AAAA AAAA
188871 CCAA * 8 29/32 CCAA CCAA CCAA TCAA CCAA CCAA CCAT CCAC
290749 CAGT * 13 48/52 CAGT CAGT CAGT CAGC CAGT CAGT CAGT CAGC CAGT CAGT CAGC CAGT CAGG
293959 CAAA * 5 18/20 CAAA CAAA CAAA CAAA CAGT
294896 TACA * 5 18/20 TACA TACA TATG TACA TACA
299828 ACAA * 5 18/20 ACAA TCAT ACAA ACAA ACAA
-----------------------------------------------------------------------------
Total sequence length......................... 300310
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 25
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
ATAA-1 AGTC-1 ACAA-1 TAAA-1 TACA-5 TTAT-2 TTTA-1 TTTG-2
TTCA-1 GACC-1 GGAT-1 GGAG-1 GCTG-1 CAAA-2 CAGT-1 CCAA-2
CCAG-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7293211|gb|AE003502.1|AE003502 Drosophila melanogaster genomic scaffold 142000013386053 section 19 of 30, complete sequence
Position Repeat Coverage Repeat
636 TGTA * 5 18/20 TGTA TGTA CATA TGTA TGTA
1309 TACA * 5 18/20 TACA TGCA TACA TACA TGCA
1879 CATA * 5 18/20 CATA CATA CTTA CATA CGTA
2484 TATT * 5 18/20 TATT TATT TATT TTTT TTTT
3212 TATT * 5 18/20 TATT TATT TATT TAGT CATT
23229 GTAT * 6 22/24 GTAT GTAC GTAT GTAT GAAT GTAT
38826 CATA * 6 22/24 CATA CATG CATA CATA CATA CACA
38925 CATA * 5 18/20 CATA CATA CATA CATA TATT
46038 AACC * 12 44/48 AACC AACC AACC AACC AACC AACA AACC AACA AACC AACC AACC ATCA
48999 GTAT * 7 26/28 GTAT GTAT GTAT GTAC ATAT GTAT GTAT
73501 TATG * 8 30/32 TATG TACA TATG TATG TATG TATG TATG TATG
86583 GTGC * 5 18/20 GTGC GTGC GTGC GTGT GTGT
89759 ATGG * 6 22/24 ATGG ATGG ATGG ATAG ATGG TTGG
91936 TATG * 8 30/32 TATG TATG TATG TATG TATG TATG TATG TACA
93182 TATG * 5 18/20 TATG TACG TATG TATG TATA
115354 CCAA * 6 24/24 CCAA CCAA CCAA CCAA CCAA CCAA
118924 GAAA * 5 18/20 GAAA GAAA GAAT GAAA AAAA
119669 ATAA * 5 19/20 ATAA CTAA ATAA ATAA ATAA
119815 TTTG * 5 19/20 TTTG TTTG TTTG TTTT TTTG
128304 TTGT * 5 18/20 TTGT TTGT TTGT TTGT ATCT
133087 GTTT * 5 18/20 GTTT GTTT TTTT GTTT TTTT
142059 TTGT * 5 19/20 TTGT TTGT TTGT TTGT TGGT
146498 TTCT * 6 22/24 TTCT TTCT TTCT TTCT TTTT TTTT
156120 TGTT * 5 18/20 TGTT TTTT TTTT TGTT TGTT
166549 CGAG * 6 23/24 CGAG CTAG CGAG CGAG CGAG CGAG
171444 TATG * 5 19/20 TATG TATG TATG TATG AATG
171779 GTTG * 8 30/32 GTTG GTTG GTTG GTTG GTTG GTTG GTGG GTTA
185291 AAAC * 6 22/24 AAAC AAAC CAAC AAAC GAAC AAAC
196311 ACTG * 7 26/28 ACTG ACTG ACTG ACTG ACTG ACTG AGTT
203185 GTAT * 6 22/24 GTAT GTAT GTAT GTAT GTAT GTTC
215459 TTGG * 7 26/28 TTGG TTGG TTGG ATGG TTGA TTGG TTGG
221198 AATT * 5 18/20 AATT AGTT AATT AATT AATC
224526 CACT * 6 22/24 CACT CGCT CACT CACT CACT CACA
226499 TACA * 5 18/20 TACA TACA TACA TACA TATG
229945 GATA * 5 18/20 GATA GTTA GATA GATA GAGA
233659 TATG * 6 22/24 TATG TATG TATG TATA TATG TATA
234584 TGAC * 22 81/88 TGAC TGAC TAAC TGAC TGAC TGAC TAAC TGAC TGAC TGAC TAAC TGAC TGAC TGAC TGAC TGAC TGAC TGAC TGAC TGAC TGAC AACT
243348 TACA * 5 18/20 TACA CACA TACA TACA AACA
260305 TGTA * 5 18/20 TGTA TGTA TGTA TATA TATA
275790 TGCG * 5 18/20 TGCG TGTG TGTG TGCG TGCG
279834 TTGA * 10 36/40 TTGA TTGA TTGT TTGA TTGA TTGA TTGA TTGT TTGA TGGT
284821 CTGG * 6 23/24 CTGG CTGG CTGG CTGG CTGG CTGC
288479 AATA * 5 18/20 AATA AAAA AAAA AATA AATA
-----------------------------------------------------------------------------
Total sequence length......................... 301929
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 43
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAC-1 AATA-1 AATT-1 AACC-1 ATAA-1 ATGG-1 ACTG-1 TATT-2
TATG-5 TACA-3 TTTG-1 TTGA-1 TTGT-2 TTGG-1 TTCT-1 TGAC-1
TGTA-2 TGTT-1 TGCG-1 GAAA-1 GATA-1 GTAT-3 GTTT-1 GTTG-1
GTGC-1 CATA-3 CACT-1 CTGG-1 CGAG-1 CCAA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7293176|gb|AE003501.1|AE003501 Drosophila melanogaster genomic scaffold 142000013386053 section 18 of 30, complete sequence
Position Repeat Coverage Repeat
34823 ATGT * 5 18/20 ATGT ATGT ATGT ATGC ATAT
43822 TGTA * 10 36/40 TGTA TGTA TGTA TGTA TGTA TGTA TGCA TGTA TGTT AGTT
54587 TGTA * 5 18/20 TGTA TATA TGTA TGTA TATA
56891 AATA * 5 18/20 AATA AATA AATA AAAA AAAA
62936 GCAA * 5 18/20 GCAA GCGA GCAA GCAA GAAA
70135 TATG * 5 19/20 TATG TATG AATG TATG TATG
76413 GTTG * 5 18/20 GTTG GCTG GTTG GTGG GTTG
99243 CAGT * 6 22/24 CAGT CAGT CAGC CAGT CAGT CAGC
102610 CCAG * 16 58/64 CCAG CCAG CCAG CCAG CCAG CCAG CCAG CCAG CCAA CCAT CCAT CCAT CCAG CCAG CCAA CCAT
102715 CCAT * 5 18/20 CCAT CCAT CCAT CCAT CGGT
106523 TATG * 5 18/20 TATG TATG TATG TATG TAAT
111736 ACAT * 5 18/20 ACAT ACAT AAAT ACAT ACAC
117295 GCTC * 5 18/20 GCTC GCTC GCTC TCTC TCTC
133887 GTCT * 8 29/32 GTCT GTCT ATCT GTCT GACT GTCT GTCT GTCA
135638 TGGG * 5 18/20 TGGG TGGG TGGG TGGT TTGG
141643 AACC * 11 40/44 AACC GACC AACC AACC AACC AAAC AACC AACC AACC GACC GACC
146632 GAAG * 5 18/20 GAAG GAAG GAAG GGAG GGAG
155184 ATAA * 5 18/20 ATAA ATAA ATAT GTAA ATAA
162220 TATG * 6 22/24 TATG TATG TATG TATG TATG TAGT
167294 AACA * 6 22/24 AACA AACA AACA AACA AATA AACC
183274 CTCG * 5 18/20 CTCG CTCG CTCT CCCG CTCG
184306 TATG * 5 18/20 TATG TATG TACA TATG TATG
209838 ATCA * 5 18/20 ATCA ATCA ATCA ATCA TACA
219035 CCTT * 10 36/40 CCTT CCTT CCTT CCTT CCTT CCTT CCAT CCTC ACTT CCGT
230552 CCAG * 5 18/20 CCAG CCAG CCAG GGAG CCAG
235535 TAAT * 8 30/32 TAAT TAAT TAAT TAAT TAAT TAAT TAAA TAAA
242346 TACA * 5 18/20 TACA TACA TACA TATG TACA
249465 CCGT * 6 23/24 CCGT CCAT CCGT CCGT CCGT CCGT
263483 GTTA * 5 18/20 GTTA GTTA GTTA TTTG GTTA
276426 TATG * 5 18/20 TATG TATG TATG TACA TATG
288410 AAAT * 5 18/20 AAAT AAAT AAAT AAAT ATAA
289076 TACA * 5 18/20 TACA TACA TACA TACA TCAA
292537 ATAC * 6 22/24 ATAC ATAC ATAC ATAC ACAC ATAT
-----------------------------------------------------------------------------
Total sequence length......................... 300191
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 33
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 AATA-1 AACA-1 AACC-1 ATAA-1 ATAC-1 ATGT-1 ATCA-1
ACAT-1 TAAT-1 TATG-5 TACA-2 TGTA-2 TGGG-1 GAAG-1 GTTA-1
GTTG-1 GTCT-1 GCAA-1 GCTC-1 CAGT-1 CTCG-1 CCAT-1 CCAG-2
CCTT-1 CCGT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7293108|gb|AE003500.1|AE003500 Drosophila melanogaster genomic scaffold 142000013386053 section 17 of 30, complete sequence
Position Repeat Coverage Repeat
4292 CGCA * 5 18/20 CGCA CACA CACA CGCA CGCA
25853 ATAA * 5 18/20 ATAA ATAA ATAC ATAT ATAA
48700 TTGT * 6 23/24 TTGT TTGT TTGT TTGT TTGT TTGG
54114 AAAT * 5 18/20 AAAT AAAT AAAT AAAT CAAA
78093 TATG * 8 29/32 TATG TATG TGTG TATG TATG CATG TATG TATA
82523 ATTA * 5 18/20 ATTA ATTA ATTA CTTG ATTA
93831 ATAA * 8 29/32 ATAA ATAA ATAA ATAA GTAA ATAA ATAT ATAT
102416 CGCT * 5 18/20 CGCT CGCT CGGT CGCT CTCT
105192 CATA * 10 36/40 CATA CATA CATA CATA CATA CATA CATA CATA CCCA AATC
152094 CGAC * 5 18/20 CGAC CGAC CGAC CGAC CGCA
154099 CAGT * 5 18/20 CAGT CAGT CAGT TAAT CAGT
156329 ACAT * 5 19/20 ACAT ACAT ACAA ACAT ACAT
161457 GTAT * 5 18/20 GTAT ATAT GTGT GTAT GTAT
177212 TTTC * 6 22/24 TTTC TTGC TTTC CTTC TTTC TTTC
184625 TATG * 7 26/28 TATG TATG TATG AATG TATG TATG TGTG
199598 TACA * 5 18/20 TACA TAAG TACA TACA TACA
202765 TATG * 5 18/20 TATG TACA TATG TATG TATG
213617 ATTT * 5 20/20 ATTT ATTT ATTT ATTT ATTT
223125 GACG * 5 19/20 GACG GACG GACG GACG GACT
232271 TGTA * 5 19/20 TGTA TGTA TGTA TGTA TATA
235008 GTTT * 5 18/20 GTTT GTTT GTTT GCTT ATTT
256746 TATG * 6 22/24 TATG TATA TATG TATG TATG TATT
260614 GGCT * 8 31/32 GGCT GGCT GGCT GACT GGCT GGCT GGCT GGCT
263786 TGTC * 5 18/20 TGTC TGTC TGTC TCTC TGTA
-----------------------------------------------------------------------------
Total sequence length......................... 327311
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 24
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 ATAA-2 ATTA-1 ATTT-1 ACAT-1 TATG-4 TACA-1 TTTC-1
TTGT-1 TGTA-1 TGTC-1 GACG-1 GTAT-1 GTTT-1 GGCT-1 CATA-1
CAGT-1 CGAC-1 CGCA-1 CGCT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7293065|gb|AE003499.1|AE003499 Drosophila melanogaster genomic scaffold 142000013386053 section 16 of 30, complete sequence
Position Repeat Coverage Repeat
24154 CCAA * 14 52/56 CCAA CCAG CCAA CCCA CCAA CCAA CCAA CCCA CCAA CCAA CCAA GCAA CCAA CCAA
27067 AAGG * 6 23/24 AAGG AAGG AAGG AAGG AAGG AGGG
27452 CAGT * 6 22/24 CAGT TAGT CAGT CAGT CAGT CAGG
29086 TTAC * 5 18/20 TTAC TCAC TGAC TTAC TTAC
33763 CCAG * 5 19/20 CCAG CCAG CCAG CCAT CCAG
33830 CAAA * 6 22/24 CAAA CAAA CAAA CAAA CAAG CAAG
80614 CCAC * 6 22/24 CCAC CCAC CCAT CCAC CCAC TCAC
87977 CCAC * 5 18/20 CCAC CCAC CAAA CCAC CCAC
91199 TCTA * 7 26/28 TCTA TCTG TCTA TCTA TCTA TCTA TCTC
98054 TACA * 5 18/20 TACA TATA TACA TACA TATA
108388 ATCA * 6 22/24 ATCA ATCA ATTA ACCA ATCA ATCA
127102 TGGT * 5 18/20 TGGT TAGT TGGT TAGT TGGT
136235 ATCA * 5 18/20 ATCA ATCA GTCA AACA ATCA
141173 TATG * 10 36/40 TATG TATG TATG TATG TATG TATG TATG TATG CGTG TCTA
160761 AATA * 5 19/20 AATA AATA AATA AATA ATTA
191464 TTAT * 5 19/20 TTAT TTAT TTAT TTAT CTAT
192041 TATT * 5 18/20 TATT TATT TGTA TATT TATT
200791 GTGA * 5 18/20 GTGA GTGA GTGA GTGA TTGG
203863 CCAT * 8 29/32 CCAT CCAT CCAT CCAT CCTT CCAT CCAG CCAG
204879 GCCA * 8 29/32 GCCA GCCA GCTA GCCA TCCA GCCA GCCA TCCA
207328 AAAC * 5 18/20 AAAC AAAA AAAA AAAC AAAC
208922 ATAA * 5 19/20 ATAA ATAA ATAA ATAA AAAA
214348 TACA * 5 18/20 TACA CACA TGCA TACA TACA
214727 TCAA * 5 19/20 TCAA TCAA TCGA TCAA TCAA
218041 TTGG * 6 23/24 TTGG TTGG TTGC TTGG TTGG TTGG
219419 TTCA * 5 18/20 TTCA TTCA TTCA TTCT TTAA
224698 ATGT * 5 19/20 ATGT ATGT ATGT ATTT ATGT
225735 AACT * 5 18/20 AACT GACA AACT AACT AACT
225760 ACTG * 5 18/20 ACTG ACTA ACTG ACAG ACTG
225835 GACT * 6 22/24 GACT GACT GACT TACT GACT AACT
227923 CGAT * 6 22/24 CGAT CGCC CGAT CGAT CGAT CGAT
227947 CTAT * 6 22/24 CTAT CTAT CTAT ATAT CTAT GTAT
234968 CCAC * 5 18/20 CCAC CCAT CCAC CCAT CCAC
234988 CCAT * 5 18/20 CCAT CCAG CCAT CCAG CCAT
237366 ACAG * 7 27/28 ACAG ACAG ACAG ACAG ACAG ACAG TCAG
238098 CCAG * 5 18/20 CCAG CCAG GCAG CCAG CCAA
247830 GTGG * 5 18/20 GTGG GTGG GTGG GTCA GTGG
250523 TTTA * 5 18/20 TTTA TTTA TTTA TTTT TTTT
271497 TATG * 5 18/20 TATG CATG TATA TATG TATG
278849 ATAC * 5 18/20 ATAC ATAC ATAC GTAC ATAT
285328 TATG * 5 19/20 TATG TATG TATA TATG TATG
-----------------------------------------------------------------------------
Total sequence length......................... 301550
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 41
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAC-1 AATA-1 AAGG-1 AACT-1 ATAA-1 ATAC-1 ATGT-1 ATCA-2
ACAG-1 ACTG-1 TATT-1 TATG-3 TACA-2 TTAT-1 TTAC-1 TTTA-1
TTGG-1 TTCA-1 TGGT-1 TCAA-1 TCTA-1 GACT-1 GTGA-1 GTGG-1
GCCA-1 CAAA-1 CAGT-1 CTAT-1 CGAT-1 CCAA-1 CCAT-2 CCAG-2
CCAC-3
----------------------------------------------------------------------------
Genomic sequence...
gi|7293037|gb|AE003498.1|AE003498 Drosophila melanogaster genomic scaffold 142000013386053 section 15 of 30, complete sequence
Position Repeat Coverage Repeat
16220 GTTG * 6 22/24 GTTG GTTG ATTG ATTG GTTG GTTG
18490 TGCC * 5 18/20 TGCC TGCC TGCC TGCT TGCT
32677 AGTC * 5 18/20 AGTC AATC AGTC AGTC ATTC
35680 TATG * 5 18/20 TATG TACG TATG TATG TAAG
36138 TTAT * 5 19/20 TTAT TTAT GTAT TTAT TTAT
37074 CCAT * 17 63/68 CCAT CCAT ACAT CCAA CCAT CCAT CCAT CCAA CCAT CCAT CCAA CCAT CCAT CCAT CTAT CCAT CCAT
51294 CAGG * 5 18/20 CAGG CAGG CAGG CAGG CAAA
51402 ATTG * 9 34/36 ATTG ATTG ATTG ATTG ATTG ACTG ATTG ATTG ATGG
51535 TTGA * 5 18/20 TTGA TTGA CTGA CTGA TTGA
51582 TTGA * 5 19/20 TTGA CTGA TTGA TTGA TTGA
81187 CGAA * 5 19/20 CGAA CGAA CGAA CGAA CGAT
106002 CAAA * 5 18/20 CAAA CAAA CATA CACA CAAA
112892 TACA * 5 19/20 TACA TACA TACA TATA TACA
179551 CCAG * 5 19/20 CCAG CCAG CCAG CCAG CCAA
179704 ACCA * 10 37/40 ACCA ACCA ACCA ACCA ACCA ACCA ACCG ACCG ACCG ACCA
192191 ATAC * 6 23/24 ATAC ATAC ATAC ATAC ATAC GTAC
213301 GGTG * 5 18/20 GGTG GTTG GGTG GTTG GGTG
218825 ACAT * 6 23/24 ACAT ACAT ACAT ACAT ACAT GCAT
223607 GTAT * 5 18/20 GTAT GTAC GTAT GTAT GTAC
227772 ATAC * 5 18/20 ATAC ATAC ATAC ATAA ATAT
265601 CGCT * 5 18/20 CGCT CGCT CTCT CGCT CGCC
271764 TTTA * 5 18/20 TTTA TTTA TTTA TTTT TTTT
276010 AAAT * 5 18/20 AAAT AATA AAAT AAAT AAAT
290231 TATG * 7 26/28 TATG TATG TATG TATG TATG TATG TGTT
309973 TTTG * 5 18/20 TTTG TTTG TTTT TTTT TTTG
310180 TATT * 6 22/24 TATT TATT TATT TATT TATT TCAT
-----------------------------------------------------------------------------
Total sequence length......................... 313384
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 26
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 ATAC-2 ATTG-1 AGTC-1 ACAT-1 ACCA-1 TATT-1 TATG-2
TACA-1 TTAT-1 TTTA-1 TTTG-1 TTGA-2 TGCC-1 GTAT-1 GTTG-1
GGTG-1 CAAA-1 CAGG-1 CGAA-1 CGCT-1 CCAT-1 CCAG-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7293000|gb|AE003497.1|AE003497 Drosophila melanogaster genomic scaffold 142000013386053 section 14 of 30, complete sequence
Position Repeat Coverage Repeat
9371 GAAC * 6 23/24 GAAC GAAC GAAC GAAC GAAG GAAC
15076 GTCA * 5 18/20 GTCA ATCA GTCA GTCT GTCA
15792 CCAT * 5 18/20 CCAT CCAT TTAT CCAT CCAT
16166 GATA * 10 36/40 GATA GATC GATA GATA GATA GAAA GATA GATA GATA CGTA
16207 ATAG * 8 30/32 ATAG ATAG ATAG ATAG ATAG ATAG ATAG CTTG
18634 AATG * 5 18/20 AATG AATG AATG AATG ACGG
24017 TATG * 7 27/28 TATG TATG TATG TATG TATG TATG TCTG
28055 AAAT * 5 19/20 AAAT AAAT AAAT AAAT AAAC
36573 CTTT * 6 24/24 CTTT CTTT CTTT CTTT CTTT CTTT
40928 GTTG * 5 18/20 GTTG GTTG GTTG GTTG GATT
43733 TGTA * 5 19/20 TGTA TGTA TGTA TGTG TGTA
53063 ACCA * 9 33/36 ACCA ACCA ACCA ACCA ACCA ACCA ACCA AACG CCCA
58078 ATAC * 5 18/20 ATAC ATAC ATAT GTAC ATAC
69065 TATT * 5 18/20 TATT TATT TGTT AATT TATT
79235 TATG * 5 18/20 TATG TATG TATG TATG TACC
81267 TCAG * 6 22/24 TCAG TCAG TCAG TCAG TCAG GTAG
145823 TAAA * 5 18/20 TAAA TAAA TAAA TTAA AAAA
166995 GACT * 5 18/20 GACT GACT GACT GACT GAAG
178359 TACA * 5 18/20 TACA TACA TACA TATG TACA
183132 GAGC * 6 22/24 GAGC GAGT GAGC GAGC GAGC GAGA
197768 GACT * 6 22/24 GACT GACT TACT GACT GACT GACA
215586 CAAT * 5 19/20 CAAT CAAT CAAT CAAT TAAT
215607 AACC * 6 23/24 AACC AACC AACA AACC AACC AACC
219201 CTCA * 6 22/24 CTCA CTTA CTCA CTCA CTCA CCCA
245174 TGTA * 5 19/20 TGTA TGTA TGTA TGTA TGTG
254249 GTCA * 5 19/20 GTCA GTAA GTCA GTCA GTCA
254795 TACA * 5 18/20 TACA TACA TACA TATG TACA
282857 TACA * 5 19/20 TACA TACA TACA TACA TATA
290881 ATAC * 5 18/20 ATAC ATAC ATAC ATAT ATAT
292604 TGTA * 5 19/20 TGTA TGTA TATA TGTA TGTA
-----------------------------------------------------------------------------
Total sequence length......................... 302494
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 30
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 AATG-1 AACC-1 ATAG-1 ATAC-2 ACCA-1 TAAA-1 TATT-1
TATG-2 TACA-3 TGTA-3 TCAG-1 GAAC-1 GATA-1 GAGC-1 GACT-2
GTTG-1 GTCA-2 CAAT-1 CTTT-1 CTCA-1 CCAT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7292986|gb|AE003496.1|AE003496 Drosophila melanogaster genomic scaffold 142000013386053 section 13 of 30, complete sequence
Position Repeat Coverage Repeat
13812 GATG * 8 29/32 GATG TATA GATG GATG GATG GATG GATG GAAG
42716 GACT * 6 22/24 GACT AACT GACT GACT GATT GACT
44374 CCAG * 5 18/20 CCAG CCAG GCAG CGAG CCAG
54380 TTTC * 5 18/20 TTTC ATTA TTTC TTTC TTTC
78582 CAGT * 5 19/20 CAGT TAGT CAGT CAGT CAGT
89491 TATG * 5 18/20 TATG TATG TATG TATG TACA
102214 AAAT * 6 22/24 AAAT AAAT GAAT AAAT GAAT AAAT
122570 TGTA * 5 18/20 TGTA TGGA TGTA TGTA TGTG
131294 TATG * 10 36/40 TATG TATG TATG TATG TATG TATG TATG TATG TATC TGGA
140999 TATG * 5 18/20 TATG TATG TATG TATG AAGG
147003 AAAT * 5 18/20 AAAT AAAT AAAT AAAC AAGT
162119 TTGT * 8 29/32 TTGT TTGT TTGT TTGT TTGT TTGC TTGT TTAG
162612 GCTG * 5 19/20 GCTG GCTG CCTG GCTG GCTG
167609 GTTT * 5 20/20 GTTT GTTT GTTT GTTT GTTT
169907 TGGT * 5 19/20 TGGT TGGT TGGT TGGC TGGT
189983 ATTG * 7 26/28 ATTG ATTG ATTG ATTG ATTG ATTG ACCG
203831 CCAA * 5 18/20 CCAA CCAT CCAA CCAT CCAA
203851 CCAT * 8 29/32 CCAT CCAC CCAA CCAT CCAT CCAT CCAT GCAT
203920 CTGT * 5 18/20 CTGT CTGT CTTT CTAT CTGT
219570 AACA * 12 44/48 AACA AACA AACG AACA AACA AACA AACA AACA AACA AACA GGCA AACT
225858 ATAC * 10 36/40 ATAC ATAC ATAC ATAC ATAC GTAC ATAC ATAG ATAC TTAT
226896 ACCA * 5 18/20 ACCA ACCA ACCA AGCA ACCG
247015 TTTA * 5 18/20 TTTA TTTA TTTA TTTT TTTT
268284 ACAT * 5 18/20 ACAT ACAT ACGT ACAT ACAC
277575 GGTC * 6 22/24 GGTC GGTC GGTT GGTT GGTC GGTC
282277 ACAT * 5 18/20 ACAT ATGT ACAT ACAT ACAT
296256 AAAT * 5 19/20 AAAT AAAT AAAT AAAT AAAA
-----------------------------------------------------------------------------
Total sequence length......................... 299357
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 27
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-3 AACA-1 ATAC-1 ATTG-1 ACAT-2 ACCA-1 TATG-3 TTTA-1
TTTC-1 TTGT-1 TGTA-1 TGGT-1 GATG-1 GACT-1 GTTT-1 GGTC-1
GCTG-1 CAGT-1 CTGT-1 CCAA-1 CCAT-1 CCAG-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7292953|gb|AE003495.1|AE003495 Drosophila melanogaster genomic scaffold 142000013386053 section 12 of 30, complete sequence
Position Repeat Coverage Repeat
26636 TTAT * 5 18/20 TTAT TTAT TTAT TTTA TTAT
31422 CATA * 5 19/20 CATA TATA CATA CATA CATA
34749 CATA * 5 18/20 CATA CATA CAAA CGTA CATA
40892 TATG * 5 18/20 TATG TATG TACA TATG TATG
45972 ATAC * 5 18/20 ATAC ATAC ATAT ATAC ACAC
46612 TATG * 6 22/24 TATG TATG TATG TATG TACA TATG
59857 GTGG * 5 19/20 GTGG GTGG GTGG GTGG TTGG
86872 TTGG * 5 19/20 TTGG TTGG TTGG TTGA TTGG
134165 GATG * 5 19/20 GATG GATG GATG GATG AATG
140755 GTGG * 5 19/20 GTGG GTGG ATGG GTGG GTGG
142480 CATA * 5 18/20 CATA CATA CATA CATA TGTA
155307 GTAT * 5 18/20 GTAT GTAT GTAT GTAT GGGT
160785 CAAA * 5 19/20 CAAA CAAA TAAA CAAA CAAA
169628 AAAT * 5 18/20 AAAT AAAT AAAT AAAC AAAC
170123 ACCA * 9 33/36 ACCA ACCA ACCA ACCA ACCA ACCA TCCA ACCG AACA
184937 TATG * 6 23/24 TATG TATG TATA TATG TATG TATG
185237 CCTT * 6 22/24 CCTT CCTT CCTT CCTT CCTG CCGT
193487 ATAA * 5 18/20 ATAA ACAA ATAC ATAA ATAA
193936 TATG * 5 18/20 TATG TATG TATG TATA TATA
195703 CATA * 5 19/20 CATA CATA CATA CATA CACA
216126 GACT * 8 30/32 GACT CACT GACT GACT GACT GACT GACT GACA
220481 GTGG * 5 18/20 GTGG GTGG GTGG GTGG CTTG
228001 TTTG * 5 18/20 TTTG TCAG TTTG TTTG TTTG
230300 TGAC * 5 19/20 TGAC TAAC TGAC TGAC TGAC
230327 CTGA * 9 33/36 CTGA CTGA CTGA CTGA CTGA ATGA ATGA CTTA CTGA
257296 GGAT * 8 29/32 GGAT GGAT GAAC GGAT GGAT GGAT GGAT AGAT
263497 GTAT * 8 29/32 GTAT GTAT GTAT GTAT GCAT GCAT GTAT GTAA
275844 AAAT * 5 18/20 AAAT ATAT AAAT AAAT AAGT
-----------------------------------------------------------------------------
Total sequence length......................... 308307
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 28
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-2 ATAA-1 ATAC-1 ACCA-1 TATG-4 TTAT-1 TTTG-1 TTGG-1
TGAC-1 GATG-1 GACT-1 GTAT-2 GTGG-3 GGAT-1 CAAA-1 CATA-4
CTGA-1 CCTT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7292942|gb|AE003494.1|AE003494 Drosophila melanogaster genomic scaffold 142000013386053 section 11 of 30, complete sequence
Position Repeat Coverage Repeat
10776 GACA * 6 22/24 GACA GACA GAAA GAGA GACA GACA
27578 CATA * 6 22/24 CATA CATA GATA CGTA CATA CATA
30719 GAGG * 6 22/24 GAGG GAGG GAGG GAGA GAGA GAGG
35870 GTTT * 5 18/20 GTTT GTTT GTTT GTTT GCCT
64123 TACA * 10 37/40 TACA TAAA AACA TACA TACA TACA TACA AACA TACA TACA
64690 GTAT * 5 19/20 GTAT GTAT GTAT GTAT GTAC
72324 GTTT * 6 23/24 GTTT GTGT GTTT GTTT GTTT GTTT
79502 TTGA * 5 18/20 TTGA TTGA TTGA TTGA TCAA
80639 ACAT * 5 18/20 ACAT ACAA ACAT ACAT ACGT
88357 TGAC * 5 19/20 TGAC TGAC TGAA TGAC TGAC
94429 TTTA * 5 19/20 TTTA TTTA TTTA TTTA TTTT
96717 GAGG * 5 18/20 GAGG GAGA GAGG GAGA GAGG
103375 CTGT * 6 22/24 CTGT CTGT CTGT CTGT GTGT GTGT
105627 CATA * 5 18/20 CATA CATA CACA CATA CACA
106654 GACA * 6 22/24 GACA GACA TACG GACA GACA GACA
123687 TCGC * 5 18/20 TCGC TCGC TCGC TCTC TCTC
129452 CCAA * 5 18/20 CCAA CCAA CCAA CCAC CCAT
158629 AAAG * 5 18/20 AAAG AAAG AAAG AAAA AAAA
159934 TAAA * 6 22/24 TAAA TAAA TAAA AAAA TAAA AAAA
172682 TACA * 5 18/20 TACA TAAA TACG TACA TACA
172716 ACAT * 5 19/20 ACAT ACAT ACAT ACAT AAAT
175477 GCGA * 5 18/20 GCGA GCGA GCGA GCAA GCAA
179545 CACC * 5 18/20 CACC CAAC CACC CAAC CACC
181865 TTGT * 5 18/20 TTGT TTGT TTGT TTGT TGTT
190279 TTGG * 5 18/20 TTGG TGGG TTGG TTGG TGGG
270728 ATAC * 6 22/24 ATAC ATAT ATAC ATAT ATAC ATAC
281289 TTAA * 5 18/20 TTAA TTAA ATAA TTAA TGAA
283544 TCAG * 6 23/24 TCAG TCAG TCAG TCAG TCAG TCTG
-----------------------------------------------------------------------------
Total sequence length......................... 300080
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 28
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAG-1 ATAC-1 ACAT-2 TAAA-1 TACA-2 TTAA-1 TTTA-1 TTGA-1
TTGT-1 TTGG-1 TGAC-1 TCAG-1 TCGC-1 GAGG-2 GACA-2 GTAT-1
GTTT-2 GCGA-1 CATA-2 CACC-1 CTGT-1 CCAA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7292892|gb|AE003493.1|AE003493 Drosophila melanogaster genomic scaffold 142000013386053 section 10 of 30, complete sequence
Position Repeat Coverage Repeat
4436 CATA * 6 22/24 CATA CATA CATA CATA CATA TGTA
17999 ATTT * 5 18/20 ATTT ATAT TTTT ATTT ATTT
19650 CCAC * 6 22/24 CCAC CCAA CCAC CCAC CCAC TCAC
25040 CTTC * 9 33/36 CTTC CTTC CTTC CTTT CTTC CTTC CTTC CCTC CTCC
43652 ATAA * 5 18/20 ATAA ATTA ATAA ACAA ATAA
71361 CACG * 5 18/20 CACG CACG CACA CAAG CACG
72498 TGTC * 6 22/24 TGTC TGTC TGTC TGTC TGCT TGTC
75862 ACTA * 5 18/20 ACTA ACTA GCTA ACTA ACTT
76315 TTTA * 5 18/20 TTTA TTAA TTTA TTAA TTTA
79572 TATG * 5 18/20 TATG TATG TTTG TTTG TATG
92415 TTAT * 7 26/28 TTAT TTAT TTAT TTAT TTAT TTTT TTTT
102383 TGTT * 6 22/24 TGTT TGTT TGCT TGTT TGTT TGGT
104645 TTGA * 5 18/20 TTGA TTGA ATGA ATGA TTGA
104941 AGTC * 5 19/20 AGTC AGTC AGTC AGTC AGTT
120642 GTAT * 5 18/20 GTAT ATAT GTAT GTAT ATAT
120815 TAAT * 5 18/20 TAAT TAAA CAAT TAAT TAAT
135979 TTAA * 5 18/20 TTAA TTTA TTAT TTAA TTAA
172068 TATG * 5 18/20 TATG CATG TATG TATG TATA
221501 AAAC * 5 18/20 AAAC AAAC AAAA AAAA AAAC
224352 TATG * 6 24/24 TATG TATG TATG TATG TATG TATG
234143 TATG * 5 18/20 TATG TGTG TATA TATG TATG
246122 TAAA * 6 22/24 TAAA TAAG TAAA TAAA TAAA TAAG
250006 ATGT * 5 18/20 ATGT ATGT ATGT ATGA ATGG
261944 AGTC * 5 18/20 AGTC AGTC AGTC AGGC AATC
262916 TATG * 5 20/20 TATG TATG TATG TATG TATG
297091 TATG * 5 18/20 TATG TATG TATG TTTG TATA
302430 GATA * 5 18/20 GATA GTTA GATA GATA GATT
307840 TCAA * 10 39/40 TCAA TCAA TCAA TCAA TCAA TCAA TCAA TCAA TCAA TCAT
-----------------------------------------------------------------------------
Total sequence length......................... 308093
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 28
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAC-1 ATAA-1 ATTT-1 ATGT-1 AGTC-2 ACTA-1 TAAA-1 TAAT-1
TATG-6 TTAA-1 TTAT-1 TTTA-1 TTGA-1 TGTT-1 TGTC-1 TCAA-1
GATA-1 GTAT-1 CATA-1 CACG-1 CTTC-1 CCAC-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7292850|gb|AE003492.1|AE003492 Drosophila melanogaster genomic scaffold 142000013386053 section 9 of 30, complete sequence
Position Repeat Coverage Repeat
15332 AAAT * 5 18/20 AAAT ACAT AAAT AAAT AAAG
15637 ATTT * 5 19/20 ATTT TTTT ATTT ATTT ATTT
45686 AAAC * 5 18/20 AAAC AAAA AAAC AAAC CAAC
58328 TTTA * 8 29/32 TTTA TTTA TTTA TTTA TTTA TTTT TTTT TTTT
80771 TAAA * 5 18/20 TAAA AAAA TAAA TAAA AAAA
89237 TACA * 6 22/24 TACA TACA TACA TACA TACA TATG
90627 GTGA * 6 22/24 GTGA GTGA GTGT GTGA GTGA GTGC
93501 GTGG * 5 18/20 GTGG GTGG GTTG GTGG GGGG
96519 GCTG * 5 18/20 GCTG GCTA GCTG ACTG GCTG
100425 TTTA * 5 18/20 TTTA TTTA TTTA TTTT TTTT
117519 TATG * 5 19/20 TATG TATG TATG TATG TATC
127200 TTGG * 5 18/20 TTGG TTGG TTGG TTAG TTAG
139948 AGAA * 5 18/20 AGAA AGAA AAAA AGAA AGTA
147988 AACC * 6 22/24 AACC AACC GACC AACC GACC AACC
148012 GACC * 5 18/20 GACC AACC GACC GACC GACG
153107 TCGA * 5 18/20 TCGA TCGA TCGA TCGA TTGC
189751 TTTG * 5 18/20 TTTG TTTG GTTG TTTG TGTG
193145 TTAT * 6 22/24 TTAT TTAT TTAT TTAT TTTT TTTT
195209 TATG * 5 18/20 TATG TATG TACG TATT TATG
195937 TATG * 6 22/24 TATG TATG TATG TATG TATG TGGG
203047 ATAC * 5 18/20 ATAC ATAC ATAC ATAT ATAT
205705 ACAT * 5 20/20 ACAT ACAT ACAT ACAT ACAT
227697 ACAT * 5 18/20 ACAT ACAT ACAT ACGT ATAT
234239 ACAT * 6 23/24 ACAT ACAT ATAT ACAT ACAT ACAT
240454 CAGT * 5 18/20 CAGT GAGT CAGT CAGT CATT
242455 TGAA * 10 36/40 TGAA TGAA TGAA TGAA TGAA TGAA TGAG TGAG TGAG TGAG
242495 TGAG * 10 36/40 TGAG TGAG TGAG TGAG TGAG TGAG CGAG TGAA CGAG TGTG
244915 ACTC * 5 18/20 ACTC ACTC ACTC ACTG ACTG
244941 TGAC * 18 65/72 TGAC TTAC TGAA TGAC TGAC TGAC TGAC TGAC TGAC TGAC TGAC CGAC TGAA TGAC TGAT TGAC GGAC TGAA
277181 AACA * 6 22/24 AACA AACA AATA ATCA AACA AACA
280884 AATG * 5 18/20 AATG GCTG AATG AATG AATG
295301 TAAA * 6 22/24 TAAA TAAA TAAA TAAA TAAA TACG
295772 ATAG * 5 19/20 ATAG ATAG ATAG ATAG ATAT
-----------------------------------------------------------------------------
Total sequence length......................... 298939
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 33
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 AAAC-1 AATG-1 AACA-1 AACC-1 ATAG-1 ATAC-1 ATTT-1
AGAA-1 ACAT-3 ACTC-1 TAAA-2 TATG-3 TACA-1 TTAT-1 TTTA-2
TTTG-1 TTGG-1 TGAA-1 TGAG-1 TGAC-1 TCGA-1 GACC-1 GTGA-1
GTGG-1 GCTG-1 CAGT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7292821|gb|AE003491.1|AE003491 Drosophila melanogaster genomic scaffold 142000013386053 section 8 of 30, complete sequence
Position Repeat Coverage Repeat
10274 TGTA * 5 19/20 TGTA TGTA TGTA TGTA TATA
74185 GTGA * 5 18/20 GTGA GTGT GTGA GTGC GTGA
83098 CATA * 5 18/20 CATA CATA AATA TATA CATA
97587 GTTC * 5 18/20 GTTC GTTC GTTC GTTC GCTG
99048 ACGC * 5 18/20 ACGC ACAC ACAC ACGC ACGC
99139 TTTA * 5 18/20 TTTA ATTA TTTA TTTA TTCA
109920 AAAC * 5 18/20 AAAC AAAC AATG AAAC AAAC
122523 ATTA * 5 18/20 ATTA ATTA ATTA GTTT ATTA
134621 ACCC * 5 18/20 ACCC ATAC ACCC ACCC ACCC
137444 GGAT * 6 22/24 GGAT GGAT GAAT GGAT GAAT GGAT
137470 ATGG * 8 29/32 ATGG ATGG ATGG ATGG ATGG TTGG CTGG TTGG
139347 CTGT * 8 29/32 CTGT CTGT CTGT CTGT CTGT CTGT GTAT GTGT
140084 TGGT * 8 29/32 TGGT TGGT TGGT TGGT TGAA TGGT TGGT TGGA
149427 ACAT * 5 19/20 ACAT ACAT ACAT ACAT AAAT
169114 TAAC * 6 22/24 TAAC TAAC TAAC CAAC TAAC TAAT
173305 AGAT * 55 198/220 AGAT AGAT AGAT TGAT AGAT AGAT TGAT AGAT AGAC TGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAA TAGA TAGA GATA AATT GCAC
175634 ATTT * 5 18/20 ATTT TTTT ATTG ATTT ATTT
214655 GCCA * 5 19/20 GCCA GACA GCCA GCCA GCCA
296785 TTAT * 5 18/20 TTAT TTAT TTTT TTAT TTTT
305177 TATG * 6 22/24 TATG TATG TATG TATG TACA TATG
306643 ACAT * 6 22/24 ACAT ACAT ACAT ACGT ACAT ACCT
314420 AAAC * 5 18/20 AAAC AAAA AAAC AAAA AAAC
320300 CCAA * 6 22/24 CCAA CCAC CCAA CCAA CCAA CCAC
321794 TATC * 7 26/28 TATC TATC TATC TATC TATC TATG TATT
-----------------------------------------------------------------------------
Total sequence length......................... 323489
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 24
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAC-2 ATTA-1 ATTT-1 ATGG-1 AGAT-1 ACAT-2 ACGC-1 ACCC-1
TAAC-1 TATG-1 TATC-1 TTAT-1 TTTA-1 TGTA-1 TGGT-1 GTTC-1
GTGA-1 GGAT-1 GCCA-1 CATA-1 CTGT-1 CCAA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7292788|gb|AE003490.1|AE003490 Drosophila melanogaster genomic scaffold 142000013386053 section 7 of 30, complete sequence
Position Repeat Coverage Repeat
15286 CCAG * 8 30/32 CCAG CTAG CCAG CCAG CCAG CCAG CCAG CCAA
16840 TCTG * 5 18/20 TCTG TCTG TCAG TCTC TCTG
25546 CACG * 5 18/20 CACG CACG CACA CACG CACA
25810 CTCG * 8 30/32 CTCG CTCG TTCG CTCG CTCG CTCG CTCG CTCT
25937 CTCG * 5 18/20 CTCG CTCG CTCG TTCG CTCT
26827 TCTA * 5 19/20 TCTA TCTA TCTA TCTA TCTC
52065 TATG * 5 18/20 TATG TATG TATG TATA TAAG
52903 TTGG * 5 19/20 TTGG TTGG TTGG TTGG TTGT
56088 CAAT * 7 26/28 CAAT TAAT CAAT CAAT CAAT CAAT CGAT
70201 CCCA * 5 18/20 CCCA TCCA CCCA TCCA CCCA
91972 GCGA * 5 18/20 GCGA ACCA GCGA GCGA GCGA
100359 GTAT * 6 22/24 GTAT GTAT GTAT GTAT GTAT GTGC
103821 GTAC * 5 18/20 GTAC GTAC GTAC GTAT GTAT
107608 TTCT * 5 18/20 TTCT TTAT TTCT TTCT TTAT
109559 ACAT * 5 18/20 ACAT ACAC ACAC ACAT ACAT
110622 TATG * 5 18/20 TATG TACA TATG TATG TATG
112496 TATG * 5 18/20 TATG TATG TACA TATG TATG
112809 TACA * 6 22/24 TACA TACA TACA AACA AACA TACA
117330 ATTA * 5 18/20 ATTA ATTA ATGA AATA ATTA
117596 TTTA * 5 18/20 TTTA TTTA TTTA TATA TATA
117886 GCGA * 5 18/20 GCGA GAGA GCGA GCGA GAGA
130525 ATAC * 5 19/20 ATAC ATAC ATAC ATAC ATAT
130677 TATG * 9 34/36 TATG TATG TATG TATG TATG TATG TATG TATG TAGA
135443 ATTA * 5 18/20 ATTA ATTA ATTA ATTG ATCA
136647 TACA * 5 18/20 TACA TACA TACA TATG TACA
145671 ATCA * 5 18/20 ATCA ATCC ATCA ATCA AACA
148898 GTAT * 5 18/20 GTAT GTAT GTGT GTGT GTAT
156953 CAAC * 6 22/24 CAAC CAAC CAAC CAAC AAAG CAAC
162020 TATG * 6 23/24 TATG TATG TATG TATG TTTG TATG
185078 CGCA * 5 18/20 CGCA CGCA CGCA CACA CACA
214940 ACTG * 9 34/36 ACTG AATG ACCG ACTG ACTG ACTG ACTG ACTG ACTG
217941 CACG * 7 26/28 CACG TACG CACG CACG CACG CACG CAGG
222622 ACTG * 8 30/32 ACTG GTTG ACTG ACTG ACTG ACTG ACTG ACTG
222656 TGGC * 6 22/24 TGGC TGGC TTGC TTGC TGGC TGGC
227117 ATTT * 5 18/20 ATTT ATTT ATTT ATTT AGTG
239385 TTTA * 5 18/20 TTTA TTTA TTTA TTTG TTTT
241537 TATG * 8 29/32 TATG TATG TATA TATG TATG TATG AATG TTTG
244459 TTTA * 6 22/24 TTTA TTTA TTTA TTTA TTTT TTTT
246923 TCAG * 26 95/104 TCAG TCAG TTAG TCAG TCAG TTAG TCAG TCAG TCAG TCAG TCAG TCAG TCAA TCAG TCAG TTAG TCAG TCAG TCAG TCAG TTAG TCAG TCAA TCTG TCAG TTGG
260959 TATT * 8 29/32 TATT TATT TATT TATT TATT TATT TATT GGTC
272602 TTTA * 5 18/20 TTTA TTTA TTTA TTTC TTTT
282745 TTAA * 5 19/20 TTAA TTAA TTAA CTAA TTAA
288721 ATGT * 5 19/20 ATGT ATGT ATGT ATGT TTGT
290128 ATAC * 5 18/20 ATAC ATAC ATAC ATAC TTGC
-----------------------------------------------------------------------------
Total sequence length......................... 302752
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 44
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
ATAC-2 ATTA-2 ATTT-1 ATGT-1 ATCA-1 ACAT-1 ACTG-2 TATT-1
TATG-6 TACA-2 TTAA-1 TTTA-4 TTGG-1 TTCT-1 TGGC-1 TCAG-1
TCTA-1 TCTG-1 GTAT-2 GTAC-1 GCGA-2 CAAT-1 CAAC-1 CACG-2
CTCG-2 CGCA-1 CCAG-1 CCCA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7292759|gb|AE003489.1|AE003489 Drosophila melanogaster genomic scaffold 142000013386053 section 6 of 30, complete sequence
Position Repeat Coverage Repeat
11835 TTAA * 5 18/20 TTAA TTAA TTAA TTTA TTCA
13307 AAAC * 5 18/20 AAAC AAAC AAAC AAAA AAAA
27361 CGCA * 5 18/20 CGCA CACA CGCA CGCA CACA
35250 GTTG * 6 22/24 GTTG GTCG TTTG GTTG GTTG GTTG
35538 AATG * 5 20/20 AATG AATG AATG AATG AATG
35894 AGGA * 5 18/20 AGGA AGGA AGGA AGGA AGCT
39212 GGCT * 6 23/24 GGCT GCCT GGCT GGCT GGCT GGCT
76387 TTAG * 5 19/20 TTAG TTAG TTAG TTAG TTAA
76410 TATT * 5 18/20 TATT TATT TATT TAGT TAAT
83334 CACT * 5 18/20 CACT CACT CATT CACT CATT
91925 CCAA * 8 30/32 CCAA TCAC CCAA CCAA CCAA CCAA CCAA CCAA
110141 TAGA * 5 19/20 TAGA TGGA TAGA TAGA TAGA
114984 TTAT * 5 20/20 TTAT TTAT TTAT TTAT TTAT
122318 TTTG * 5 18/20 TTTG TTTG TTTG TTTG AGTG
155223 ACAT * 5 19/20 ACAT ACAT ACAT ACAT ATAT
157013 CAAC * 5 19/20 CAAC CAAC CAAC CAAC CGAC
157621 AATG * 5 18/20 AATG AATG AATG AATG TGTG
161000 ATTT * 5 19/20 ATTT ATTT ATTT ATTT TTTT
161905 GATC * 5 19/20 GATC GATC GATC GATG GATC
186979 TTTG * 5 18/20 TTTG TTTC TTTA TTTG TTTG
195726 TTTG * 5 18/20 TTTG TTTG GTAG TTTG TTTG
196322 TAAT * 5 18/20 TAAT TAGT TAAT TAGT TAAT
211709 GATT * 8 30/32 GATT GATT GATT GATT GATT GATT AATC GATT
217474 TGGA * 13 47/52 TGGA TGGG TGGA TGGA TGGA TGGG TGGA TGGA TGGA TGGA TGGA TGGG TGTG
240381 GATG * 8 29/32 GATG GATG GATG GATG GATG GATG GATT GGAG
253886 ACAT * 6 23/24 ACAT ACAT ACAT ACAT ACAT GCAT
255282 TATG * 5 18/20 TATG TACA TATG TATG TATG
295153 TCTG * 5 18/20 TCTG TCCG TCTG TCTG TGTG
302257 ATAA * 5 18/20 ATAA ATAA GTAA ATAA ATAG
-----------------------------------------------------------------------------
Total sequence length......................... 302915
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 29
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAC-1 AATG-2 ATAA-1 ATTT-1 AGGA-1 ACAT-2 TAAT-1 TATT-1
TATG-1 TAGA-1 TTAA-1 TTAT-1 TTAG-1 TTTG-3 TGGA-1 TCTG-1
GATT-1 GATG-1 GATC-1 GTTG-1 GGCT-1 CAAC-1 CACT-1 CGCA-1
CCAA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7292734|gb|AE003488.1|AE003488 Drosophila melanogaster genomic scaffold 142000013386053 section 5 of 30, complete sequence
Position Repeat Coverage Repeat
6303 TTTC * 6 23/24 TTTC TTTC TTTC TTTC TTTC TTTT
10851 TACA * 5 18/20 TACA TACA TACA TATA TATA
25751 TGTA * 5 18/20 TGTA TATA TGTA TGTA TGTG
31879 TATT * 6 22/24 TATT TTTT TATT TATT TATT TTTT
32097 AATA * 5 18/20 AATA AATA AATA AATC AATT
32295 TCGG * 5 18/20 TCGG TCGG TCGG TCGC TCGT
40317 TCCA * 6 22/24 TCCA TCCA CCCA TCCA ACCA TCCA
65207 AAAG * 5 18/20 AAAG AATG AAAG AAAG AATG
102078 CAAA * 8 29/32 CAAA CAAA CAGG CAAA CAAA CAAA CAAA CCAA
129038 ATAC * 5 18/20 ATAC ATAT ATAC ATAC ATAT
133198 GTAT * 5 18/20 GTAT GTAT GTAC ATAT GTAT
141367 TATC * 5 18/20 TATC CATC TGTC TATC TATC
145920 TATG * 5 18/20 TATG TATG TATA TAAG TATG
148858 ACAT * 5 18/20 ACAT ACAT ACAT ACAC ATAT
162635 CCAG * 8 29/32 CCAG CCAG CCAA ACAG CCAG CCAG CCAG CCAA
164747 ATAC * 5 19/20 ATAC ATAC ATAC ATAC ATAT
171949 TTAT * 5 18/20 TTAT TTAT ATAT TTAT ATAT
175811 TGTA * 5 18/20 TGTA TATA TGTA TGTA TGTG
182715 GTTA * 5 18/20 GTTA GTTA GTTA GTTA GCTT
183693 TGGA * 7 26/28 TGGA TGGA TGGA TGGA TGGA TGGA TAGT
188720 TTTC * 5 18/20 TTTC TTTT TTTC TTTT TTTC
189565 TGAC * 5 18/20 TGAC TGAC TGAC AGAC AGAC
189813 GCAG * 5 20/20 GCAG GCAG GCAG GCAG GCAG
192387 TACA * 5 18/20 TACA TACA TACA TACG TATA
192544 AAAG * 5 18/20 AAAG AAAG AAAG AAAA AAAA
195635 GCAG * 6 23/24 GCAG CCAG GCAG GCAG GCAG GCAG
198555 TTTG * 5 18/20 TTTG TTTG TTTG TTTT TTTT
204356 GTCA * 6 22/24 GTCA GTCA GTCA GTCA GTCA GCCC
211466 TAGA * 6 23/24 TAGA TAGA TAGA TAGA TATA TAGA
215680 ATGG * 8 30/32 ATGG ATGG ATGG ATGG ATGG ACGA ATGG ATGG
216064 ATTT * 5 18/20 ATTT TTTT TTTT ATTT ATTT
223272 GTGG * 6 22/24 GTGG GTGG TTGG GTGG TTGG GTGG
232363 CCTA * 5 19/20 CCTA CCTA CCTA ACTA CCTA
233991 CCAC * 5 18/20 CCAC ACAC CCAC ACAC CCAC
234679 GTCA * 5 19/20 GTCA GTCA GCCA GTCA GTCA
235710 AGCC * 5 18/20 AGCC ACCC AGCC AGCC AGCG
243285 AAAG * 5 18/20 AAAG ATAG AAAG AAAA AAAG
256652 ACAT * 5 18/20 ACAT CCAT CCAT ACAT ACAT
263115 GACG * 5 18/20 GACG GACA GACC GACG GACG
263805 CATA * 6 22/24 CATA CATT CATA CATA CATA TATA
278678 TCAA * 5 18/20 TCAA TCAA TCAA TCAG TCGA
284378 TTTA * 5 18/20 TTTA TTAA TTTA TTTA TTAA
288071 GTGG * 5 18/20 GTGG GTGG ATGG GTGG CTGG
298999 CACT * 6 22/24 CACT CACT AACT CATT CACT CACT
302292 GAAC * 5 18/20 GAAC GAAC GAAC GAAT GAAA
-----------------------------------------------------------------------------
Total sequence length......................... 302797
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 45
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAG-3 AATA-1 ATAC-2 ATTT-1 ATGG-1 AGCC-1 ACAT-2 TATT-1
TATG-1 TATC-1 TAGA-1 TACA-2 TTAT-1 TTTA-1 TTTG-1 TTTC-2
TGAC-1 TGTA-2 TGGA-1 TCAA-1 TCGG-1 TCCA-1 GAAC-1 GACG-1
GTAT-1 GTTA-1 GTGG-2 GTCA-2 GCAG-2 CAAA-1 CATA-1 CACT-1
CCAG-1 CCAC-1 CCTA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7292680|gb|AE003487.1|AE003487 Drosophila melanogaster genomic scaffold 142000013386053 section 4 of 30, complete sequence
Position Repeat Coverage Repeat
16 GTAT * 5 19/20 GTAT GTAT GTAT GTAT GCAT
2179 AAAT * 6 23/24 AAAT AAAT AAAT AAAT CAAT AAAT
19206 GAGT * 5 18/20 GAGT TACT GAGT GAGT GAGT
41206 GCTG * 5 18/20 GCTG GCTG GCTG ACTG TCTG
43207 TTAG * 5 18/20 TTAG TTAG TTAG TTAG CCAG
44094 TGAT * 5 18/20 TGAT TGAT TGAT TGAT TGCC
46518 TACA * 5 18/20 TACA TGCA TACA TACA TATA
62311 TGTA * 7 26/28 TGTA TGAA TGTA TGTA TGTA TGTA CGTA
67410 CGAT * 5 18/20 CGAT CCGT CGAT CGAT CGAT
79386 TATG * 5 18/20 TATG TATG TATG TATG TTTT
112412 AAAC * 5 18/20 AAAC AAAC AAAC AAAA AAAA
140392 TATG * 5 19/20 TATG CATG TATG TATG TATG
168777 GCCA * 10 36/40 GCCA GCTA GCCA GCCA GCCA GCCA GCCA GGCA GCTA ACCA
172571 ATAC * 5 18/20 ATAC ATAC ATAC AATC ATAC
189967 GACA * 5 18/20 GACA GACA GACA GAGG GACA
198549 GTAT * 5 18/20 GTAT GTAT ATAT GTAT ATAT
207564 ATAC * 5 19/20 ATAC ATAC ATAC ATAC ATAT
222366 TGAT * 13 47/52 TGAT TGGC TGAT TGAT TGAT TGAT TGAT TGAT TGAT TGAT TGAC TGTT TGTT
226578 ATGT * 5 18/20 ATGT ATGT ATGT ATTT ATAT
227124 TATG * 5 18/20 TATG CATG TACG TATG TATG
234097 GATT * 5 18/20 GATT GATT GATT GATT GGTC
234352 CTAT * 6 23/24 CTAT CTAT CTAT CTAT CTAT CTAG
253727 TTTG * 5 19/20 TTTG TTTG TTTG TTTG TGTG
259135 TTGG * 5 18/20 TTGG TTGG TTGG TTAG TTAG
284000 CCAT * 5 18/20 CCAT CCAT CCAT TCAT CCCT
-----------------------------------------------------------------------------
Total sequence length......................... 301051
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 25
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 AAAC-1 ATAC-2 ATGT-1 TATG-3 TACA-1 TTAG-1 TTTG-1
TTGG-1 TGAT-2 TGTA-1 GATT-1 GAGT-1 GACA-1 GTAT-2 GCTG-1
GCCA-1 CTAT-1 CGAT-1 CCAT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7292639|gb|AE003486.1|AE003486 Drosophila melanogaster genomic scaffold 142000013386053 section 3 of 30, complete sequence
Position Repeat Coverage Repeat
3072 TACA * 6 22/24 TACA TACA TACA TACA TACA CATA
11952 ACAT * 5 18/20 ACAT ACAT ATTT ACAT ACAT
13076 ACCA * 7 27/28 ACCA ACCA ACCA ACCA ACCA ACCA ACAA
37109 AAAC * 5 18/20 AAAC AAAC AAAC AAAC AGAA
38606 TTAT * 6 22/24 TTAT TTAT TTAT TTAT TTAT TCTT
58284 TACA * 5 18/20 TACA TACA TACA TATG TACA
58886 ATAC * 5 18/20 ATAC ATAC ATAC ATAT ATGC
75149 GTGG * 5 18/20 GTGG ATGG GTGG GTGG GTGT
107765 TTTA * 5 18/20 TTTA TATA TTTA TTTA TTTG
118047 TATG * 5 18/20 TATG TATG TATG TACA TATG
119506 ATCG * 5 19/20 ATCG ATCG ATCG ATCG ATCA
126071 TTTG * 5 18/20 TTTG TTTG TTTG TTTT TTTT
137327 ATGA * 5 19/20 ATGA ATGA ATGA ATGA CTGA
137360 TGAA * 5 19/20 TGAA TGAA TGAA TGAA TGAT
166123 AAAT * 5 18/20 AAAT AAAT AAAT GAAT AAAC
166817 TATG * 5 18/20 TATG TAAG TCTG TATG TATG
170193 GAAT * 5 18/20 GAAT GAAT GAAT GAAT AAAA
196243 TATG * 5 18/20 TATG TATA TAGG TATG TATG
198338 TATG * 5 18/20 TATG TATA TAGG TATG TATG
205470 ATAC * 5 18/20 ATAC ATAC ATAC ATAT ATAG
224293 TTAT * 5 18/20 TTAT TTAA TTAT TTAT TTGT
224480 AAAC * 8 30/32 AAAC AAAC AAAC AAAC AAAG CAAC AAAC AAAC
227698 CTTT * 5 18/20 CTTT CTTT CTTT TTTT TTTT
231664 TTAT * 5 18/20 TTAT TTTT TTTT TTAT TTAT
232748 TATG * 5 18/20 TATG TATG TATG TATG TACA
233133 AACT * 5 18/20 AACT AACT AACT AACT AAAC
240723 ATGG * 6 22/24 ATGG TTGG ATAG ATGG ATGG ATGG
248789 ATAC * 6 23/24 ATAC ATAC ATAC ATAC ATAC AAAC
249593 AATC * 5 18/20 AATC ATTC CATC AATC AATC
251630 TATG * 5 18/20 TATG TACT TATG TATG TATG
255572 TATG * 5 19/20 TATG TATG TATG TATG TAAG
258537 TATG * 5 18/20 TATG TATG TATG TATG TACA
260307 TTTG * 6 22/24 TTTG TTTG TCTG TTTG ATTG TTTG
275044 AGCC * 5 19/20 AGCC AGCC AGCC AGCC AACC
276246 TTAT * 5 18/20 TTAT TTAT TGGT TTAT TTAT
284393 TCTT * 5 18/20 TCTT TCTT TCTT TCTT TCGA
287813 ATTT * 5 18/20 ATTT ATTT ATTT ATTC CTTT
302329 TATG * 5 19/20 TATG TATG TATG TATG TATA
-----------------------------------------------------------------------------
Total sequence length......................... 303648
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 38
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-1 AAAC-2 AATC-1 AACT-1 ATAC-3 ATTT-1 ATGA-1 ATGG-1
ATCG-1 AGCC-1 ACAT-1 ACCA-1 TATG-9 TACA-2 TTAT-4 TTTA-1
TTTG-2 TGAA-1 TCTT-1 GAAT-1 GTGG-1 CTTT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7292593|gb|AE003485.1|AE003485 Drosophila melanogaster genomic scaffold 142000013386053 section 2 of 30, complete sequence
Position Repeat Coverage Repeat
103 ATAG * 5 19/20 ATAG ATAC ATAG ATAG ATAG
14093 TATG * 5 18/20 TATG TATA TATG TATA TATG
14117 TATG * 5 18/20 TATG TATA TATG TATA TATG
14141 TATG * 5 18/20 TATG TATA TATG TATA TATG
14165 TATG * 5 18/20 TATG TATA TATG TATA TATG
14189 TATG * 5 18/20 TATG TATA TATG TATA TATG
14213 TATG * 5 18/20 TATG TATA TATG TATA TATG
14237 TATG * 5 18/20 TATG TATA TATG TATA TATG
14261 TATG * 5 18/20 TATG TATA TATG TATA TATG
14285 TATG * 5 18/20 TATG TATA TATG TATA TATG
14309 TATG * 5 18/20 TATG TATA TATG TATA TATG
14333 TATG * 5 18/20 TATG TATA TATG TATA TATG
14357 TATG * 5 18/20 TATG TATA TATG TATA TATG
14381 TATG * 5 18/20 TATG TATA TATG TATA TATG
14405 TATG * 5 18/20 TATG TATA TATG TATA TATG
14429 TATG * 6 22/24 TATG TATA TATG TATA TATG TATG
50758 TAAA * 5 18/20 TAAA TAAA TACA TAAA CAAA
56263 TATC * 6 22/24 TATC TATC AATC TATC TATC TATA
56350 TATC * 6 22/24 TATC TATC TATC TATC TATA TATA
69362 AGAA * 5 18/20 AGAA AGGA GGAA AGAA AGAA
78508 CCAA * 6 23/24 CCAA CCAA CCAA CCAA CCAA CGAA
86655 TTGG * 5 18/20 TTGG ATGG TTGG ATGG TTGG
89489 AGTA * 5 18/20 AGTA CGTA AGTA AGTA ATTA
94335 GGTT * 5 18/20 GGTT GGTT GGTT CGGT GGTT
95470 TCGT * 5 19/20 TCGT TCGT TCGT TCGT TCGC
138618 GTTG * 5 18/20 GTTG GTTG GTTG GTTG GTGC
155741 TGAG * 5 18/20 TGAG TGAG TGAG AGAG AGAG
165483 ATGT * 5 18/20 ATGT ATGT ACAT ATGT ATGT
169061 GGCA * 5 20/20 GGCA GGCA GGCA GGCA GGCA
174585 GGCA * 11 40/44 GGCA GGCA GGCA GGCA GGCA GGCA GGCA GGCA GGCT GGCA TTAA
180800 ACAG * 6 22/24 ACAG ACGG ACAG AGAG ACAG ACAG
180825 CAGA * 5 18/20 CAGA CAGA AAGA CAGA CAGT
191981 ATTT * 5 18/20 ATTT ATTT ATTT TTTT TTTT
198961 AGTG * 5 18/20 AGTG AGTG CGTG AGTG TGTG
223678 ATGT * 6 23/24 ATGT ATGT ATGT ATGT ATGT ATTT
247303 CATA * 5 18/20 CATA CATA CATA CCTA GATA
252157 TTGT * 5 18/20 TTGT TTGT TTGT TTGT TGTT
252521 AAAC * 5 18/20 AAAC AAAC AAAC ACAC ACAC
253453 AACA * 5 18/20 AACA AACA AACC AGCA AACA
253911 TACA * 5 18/20 TACA TACA TACA TACA TAAC
257891 TATG * 5 19/20 TATG TATG TATG TATG TATC
285778 TAGA * 5 18/20 TAGA TATA TAGA TAGA TATA
285920 GATA * 5 18/20 GATA AATA GATA GAAA GATA
296900 TATG * 5 18/20 TATG TATG TATG TATG TACA
300287 ATAA * 5 18/20 ATAA ATGA ATAA ATTA ATAA
-----------------------------------------------------------------------------
Total sequence length......................... 302427
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 45
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAC-1 AACA-1 ATAA-1 ATAG-1 ATTT-1 ATGT-2 AGAA-1 AGTA-1
AGTG-1 ACAG-1 TAAA-1 TATG-17 TATC-2 TAGA-1 TACA-1 TTGT-1
TTGG-1 TGAG-1 TCGT-1 GATA-1 GTTG-1 GGTT-1 GGCA-2 CATA-1
CAGA-1 CCAA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7292554|gb|AE003484.1|AE003484 Drosophila melanogaster genomic scaffold 142000013386053 section 1 of 30, complete sequence
Position Repeat Coverage Repeat
2863 ATAC * 5 18/20 ATAC ATAT ATAC GTAC ATAC
8481 ATAC * 5 18/20 ATAC ATAC ATAC ATAT GTAC
27025 TAGG * 5 18/20 TAGG TAGG TAGG TACA TAGG
31941 TTGT * 5 18/20 TTGT TTGT TGGT TTAT TTGT
54687 AAAC * 5 18/20 AAAC AAAC AAAC AAAA AAAA
57859 TATG * 7 26/28 TATG TATG TATG TATG TACA TATG TATG
66381 CTGG * 7 26/28 CTGG CTGG CTGG CTGG CTCG CTGG CTGA
75956 ATTT * 5 18/20 ATTT CTTT ATAT ATTT ATTT
91758 CTAT * 5 18/20 CTAT CTAT CTAT TTAT CTAA
95203 CCTC * 5 18/20 CCTC CCTC CATC CATC CCTC
95223 CATC * 5 18/20 CATC TATC CATC CATC CCTC
119316 GATA * 6 22/24 GATA GATA GATA GATA GATA GGTG
130370 CATA * 5 18/20 CATA CATA CATA CATA TGTA
161843 CGAA * 5 20/20 CGAA CGAA CGAA CGAA CGAA
168091 TTCT * 6 22/24 TTCT TTCT TTCT TTCT CTCC TTCT
185034 TGGA * 7 26/28 TGGA TGGA TGGA TGGC TGGA TGGA TGGT
202593 CCCA * 5 18/20 CCCA GCCA CCCA GCCA CCCA
207630 ATAC * 5 18/20 ATAC ATAC ATAC TCAC ATAC
212267 GCTG * 6 23/24 GCTG GCTG GCTG GCTG ACTG GCTG
223285 AATC * 5 18/20 AATC GAGC AATC AATC AATC
226354 CGAC * 6 22/24 CGAC CGAC CAAA CGAC CGAC CGAC
241336 ATTG * 5 18/20 ATTG AGAG ATTG ATTG ATTG
248327 TCTG * 7 26/28 TCTG TCTG TCTG TCTG TCTG TCTG CGTG
248547 GTCT * 6 23/24 GTCT GTCT ATCT GTCT GTCT GTCT
262656 TATG * 5 18/20 TATG TATG TATG TACG TATT
262958 TCTG * 6 22/24 TCTG TCTG GCTG TCTG CCTG TCTG
266696 CATT * 5 19/20 CATT CATT CATT CGTT CATT
267265 GTTG * 5 18/20 GTTG GTTG TTTG GTCG GTTG
278307 CATA * 5 18/20 CATA TATA CATA CATA CGTA
284608 TTTG * 5 19/20 TTTG TTTA TTTG TTTG TTTG
285550 TATG * 5 18/20 TATG TACA TATG TATG TATG
288760 TAGG * 5 18/20 TAGG TAGG TAGG TAGG TACA
291988 TGAA * 5 18/20 TGAA TGAA CGAA TGAA TGCA
-----------------------------------------------------------------------------
Total sequence length......................... 314087
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 33
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAC-1 AATC-1 ATAC-3 ATTT-1 ATTG-1 TATG-3 TAGG-2 TTTG-1
TTGT-1 TTCT-1 TGAA-1 TGGA-1 TCTG-2 GATA-1 GTTG-1 GTCT-1
GCTG-1 CATA-2 CATT-1 CATC-1 CTAT-1 CTGG-1 CGAA-1 CGAC-1
CCTC-1 CCCA-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7289319|gb|AE002799.1|AE002799 Drosophila melanogaster genomic scaffold 142000013385566, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------
Total sequence length......................... 18364
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------
Genomic sequence...
gi|7288894|gb|AE002936.1|AE002936 Drosophila melanogaster genomic scaffold 142000013385220, complete sequence
Position Repeat Coverage Repeat
34077 ATTT * 5 18/20 ATTT CTTT GTTT ATTT ATTT
42758 ACAT * 5 18/20 ACAT ACAT ATAT ACAT ATAT
-----------------------------------------------------------------------------
Total sequence length......................... 48123
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 2
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
ATTT-1 ACAT-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7289027|gb|AE003066.1|AE003066 Drosophila melanogaster genomic scaffold 142000013385325, complete sequence
Position Repeat Coverage Repeat
1 TATC * 90 326/360 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC CATC TATC TATC CATC TATC TATC TATC TATC TTTC TATC AACC TGTT GTTT CGGG ACCT TGCT CTTG TTGA CACT CTCA
-----------------------------------------------------------------------------
Total sequence length......................... 28380
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
TATC-1
----------------------------------------------------------------------------
Genomic sequence...
gi|7288910|gb|AE003200.1|AE003200 Drosophila melanogaster genomic scaffold 142000013385226, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------
Total sequence length......................... 14631
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------
Tetra-Nucleotide repeats in Drosophila melanogaster Chromosome-X Genomic Scaffolds
Minimum tetra-nucleotide repeating units = 5 (allowing a maximum of 10% mismatch)
Total 88 sequences searched with a total of 21946395 bp length
Total 2125 repeats covering 45453 / 49548 base pairs
Length distribution of all tetra-nucleotide repeats
----------------------------------------------------------------------------------------------------------------------------------------------------
No. of repeat units 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 >=25
total repeats 1413 399 84 110 28 40 17 5 11 2 5 2 2 2 0 1 0 1 0 0 3
----------------------------------------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tetra-nucleotide repeat classes
54-AAAT 20-AATA 22-ATAA 27-TAAA 27-ATTT 39-TTTA 38-TTAT 20-TATT = 247
8-AAAG 3-AAGA 5-AGAA 4-GAAA 8-CTTT 9-TTTC 5-TTCT 1-TCTT = 43
26-AAAC 14-AACA 16-ACAA 27-CAAA 14-GTTT 36-TTTG 23-TTGT 18-TGTT = 174
5-AATT 7-ATTA 10-TTAA 7-TAAT = 29
10-AATG 7-ATGA 6-TGAA 5-GAAT 3-CATT 6-ATTC 9-TTCA 3-TCAT = 49
5-AATC 11-ATCA 11-TCAA 6-CAAT 4-GATT 5-ATTG 12-TTGA 7-TGAT = 61
2-AAGT 1-AGTA 2-GTAA 0-TAAG 0-ACTT 1-CTTA 2-TTAC 1-TACT = 9
1-AAGG 1-AGGA 2-GGAA 1-GAAG 3-CCTT 3-CTTC 2-TTCC 1-TCCT = 14
2-AAGC 0-AGCA 1-GCAA 1-CAAG 1-GCTT 0-CTTG 2-TTGC 0-TGCT = 7
3-AACT 4-ACTA 0-CTAA 3-TAAC 4-AGTT 5-GTTA 4-TTAG 0-TAGT = 23
1-AACG 0-ACGA 4-CGAA 4-GAAC 2-CGTT 2-GTTC 0-TTCG 1-TCGT = 14
12-AACC 18-ACCA 19-CCAA 9-CAAC 4-GGTT 16-GTTG 17-TTGG 13-TGGT = 108
9-ATAG 4-TAGA 6-AGAT 10-GATA 8-CTAT 8-TATC 4-ATCT 11-TCTA = 60
97-ATAC 105-TACA 70-ACAT 53-CATA 33-GTAT 184-TATG 41-ATGT 38-TGTA = 621
16-ATGG 8-TGGA 13-GGAT 11-GATG 22-CCAT 9-CATC 9-ATCC 10-TCCA = 98
0-ATGC 3-TGCA 0-GCAT 0-CATG = 3
6-ATCG 1-TCGA 5-CGAT 7-GATC = 19
3-AGAC 11-GACA 13-ACAG 7-CAGA 4-GTCT 11-TCTG 12-CTGT 14-TGTC = 75
3-AGTG 7-GTGA 4-TGAG 4-GAGT 7-CACT 3-ACTC 4-CTCA 1-TCAC = 33
17-AGTC 17-GTCA 12-TCAG 10-CAGT 14-GACT 19-ACTG 16-CTGA 20-TGAC = 125
0-AGGT 0-GGTA 0-GTAG 2-TAGG 0-ACCT 1-CCTA 1-CTAC 0-TACC = 4
2-AGGG 1-GGGA 3-GGAG 3-GAGG 2-CCCT 1-CCTC 1-CTCC 1-TCCC = 14
3-AGGC 3-GGCA 3-GCAG 1-CAGG 3-GCCT 0-CCTG 0-CTGC 3-TGCC = 16
2-AGCT 0-GCTA 0-CTAG 0-TAGC = 2
2-AGCG 7-GCGA 4-CGAG 6-GAGC 3-CGCT 4-GCTC 6-CTCG 6-TCGC = 38
7-AGCC 15-GCCA 17-CCAG 7-CAGC 7-GGCT 12-GCTG 8-CTGG 7-TGGC = 80
0-ACGT 0-CGTA 1-GTAC 0-TACG = 1
11-ACGG 7-CGGA 1-GGAC 8-GACG 4-CCGT 0-CGTC 10-GTCC 2-TCCG = 43
2-ACGC 5-CGCA 0-GCAC 5-CACG 0-GCGT 1-CGTG 6-GTGC 4-TGCG = 23
4-ACCG 3-CCGA 8-CGAC 5-GACC 1-CGGT 4-GGTC 0-GTCG 4-TCGG = 29
7-ACCC 8-CCCA 13-CCAC 4-CACC 2-GGGT 8-GGTG 16-GTGG 4-TGGG = 62
0-GGGC 0-GGCG 0-GCGG 0-CGGG 1-GCCC 0-CCCG 0-CCGC 0-CGCC = 1
0-GGCC 0-GCCG 0-CCGG 0-CGGC = 0
----------------------------------------------------------------------------------------------------
----------------------------------------------------------------------------------------------------
Tetra-nucleotide repeats longer than 40 bp (repeated 10 or more times)
0-AAAT 0-AATA 0-ATAA 0-TAAA 0-ATTT 0-TTTA 0-TTAT 0-TATT = 0
0-AAAG 0-AAGA 0-AGAA 0-GAAA 0-CTTT 0-TTTC 0-TTCT 0-TCTT = 0
0-AAAC 1-AACA 0-ACAA 1-CAAA 2-GTTT 0-TTTG 0-TTGT 0-TGTT = 4
0-AATT 0-ATTA 0-TTAA 0-TAAT = 0
1-AATG 1-ATGA 1-TGAA 1-GAAT 0-CATT 0-ATTC 2-TTCA 0-TCAT = 6
0-AATC 1-ATCA 1-TCAA 0-CAAT 0-GATT 0-ATTG 2-TTGA 1-TGAT = 5
0-AAGT 0-AGTA 0-GTAA 0-TAAG 0-ACTT 0-CTTA 0-TTAC 0-TACT = 0
0-AAGG 0-AGGA 1-GGAA 0-GAAG 1-CCTT 0-CTTC 0-TTCC 0-TCCT = 2
0-AAGC 0-AGCA 0-GCAA 0-CAAG 0-GCTT 0-CTTG 0-TTGC 0-TGCT = 0
0-AACT 0-ACTA 0-CTAA 1-TAAC 0-AGTT 0-GTTA 0-TTAG 0-TAGT = 1
0-AACG 0-ACGA 0-CGAA 0-GAAC 0-CGTT 0-GTTC 0-TTCG 0-TCGT = 0
2-AACC 1-ACCA 3-CCAA 0-CAAC 0-GGTT 0-GTTG 1-TTGG 1-TGGT = 8
0-ATAG 0-TAGA 1-AGAT 2-GATA 1-CTAT 2-TATC 0-ATCT 1-TCTA = 7
2-ATAC 3-TACA 4-ACAT 1-CATA 1-GTAT 5-TATG 2-ATGT 3-TGTA = 21
1-ATGG 1-TGGA 0-GGAT 1-GATG 3-CCAT 2-CATC 0-ATCC 1-TCCA = 9
0-ATGC 0-TGCA 0-GCAT 0-CATG = 0
0-ATCG 0-TCGA 0-CGAT 0-GATC = 0
0-AGAC 1-GACA 2-ACAG 0-CAGA 0-GTCT 0-TCTG 0-CTGT 0-TGTC = 3
0-AGTG 0-GTGA 1-TGAG 0-GAGT 0-CACT 0-ACTC 1-CTCA 0-TCAC = 2
1-AGTC 2-GTCA 2-TCAG 2-CAGT 1-GACT 0-ACTG 1-CTGA 5-TGAC = 14
0-AGGT 0-GGTA 0-GTAG 0-TAGG 0-ACCT 0-CCTA 0-CTAC 0-TACC = 0
0-AGGG 0-GGGA 0-GGAG 0-GAGG 0-CCCT 0-CCTC 0-CTCC 0-TCCC = 0
0-AGGC 1-GGCA 0-GCAG 0-CAGG 1-GCCT 0-CCTG 0-CTGC 0-TGCC = 2
0-AGCT 0-GCTA 0-CTAG 0-TAGC = 0
0-AGCG 0-GCGA 0-CGAG 0-GAGC 0-CGCT 1-GCTC 0-CTCG 0-TCGC = 1
0-AGCC 2-GCCA 2-CCAG 0-CAGC 0-GGCT 0-GCTG 0-CTGG 0-TGGC = 4
0-ACGT 0-CGTA 0-GTAC 0-TACG = 0
0-ACGG 0-CGGA 0-GGAC 0-GACG 0-CCGT 0-CGTC 2-GTCC 0-TCCG = 2
0-ACGC 0-CGCA 0-GCAC 0-CACG 0-GCGT 0-CGTG 0-GTGC 0-TGCG = 0
0-ACCG 0-CCGA 0-CGAC 0-GACC 0-CGGT 0-GGTC 0-GTCG 0-TCGG = 0
0-ACCC 0-CCCA 0-CCAC 0-CACC 0-GGGT 0-GGTG 0-GTGG 0-TGGG = 0
0-GGGC 0-GGCG 0-GCGG 0-CGGG 0-GCCC 0-CCCG 0-CCGC 0-CGCC = 0
0-GGCC 0-GCCG 0-CCGG 0-CGGC = 0
----------------------------------------------------------------------------------------------------
Total repeats longer than 40 bp = 91
----------------------------------------------------------------------------------------------------
© Division of Biochemical Sciences, National Chemical Laboratory, Pune 411008, INDIA