Tri-Nucleotide Repeats in Genomic Sequences
Tri-Nucleotide Repeats in
Drosophila melanogaster Chromosome-X genomic scaffolds
Genomic sequence
gi|7289277|gb|AE002611.1|AE002611 Drosophila melanogaster genomic scaffold 142000013385548, complete sequence
Position Repeat Coverage Repeat
12371 GGT * 7 19/21 GGT GTT GGT GGT GTT GGT GGT
12394 TGG * 8 22/24 TGG TGG TGT TGG TGG TGT TGG TGG
13564 TAT * 12 33/36 TAT TAT AAT TAT TAT TAT TAT TAT TAT TAT TAC TGT
22984 CAC * 8 22/24 CAC CAC CAC CAC TAC CAA CAC CAC
29379 GCT * 14 38/42 GCT GCT GCT GCT GCT GCT GCT GCT ACT GCT GCT GAT GCC GTT
44806 GTG * 8 23/24 GTG ATG GTG GTG GTG GTG GTG GTG
74046 GCG * 7 19/21 GCG GCG GCT GCG GCG GCG GGG
85160 TTA * 7 20/21 TTA TTA TTA TTA TTA TTA TTG
88883 GCT * 7 19/21 GCT GCT GCT GCT GCT GCT GTC
114523 AGC * 7 19/21 AGC AGG AGG AGC AGC AGC AGC
163585 ATT * 11 31/33 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT GTG
177436 CCA * 8 22/24 CCA CCT CCA CCA CCA CCA GCA CCA
178635 CAG * 9 25/27 CAG CTG CAG CAG CAG CAG CAG CAG CAC
178775 GCA * 7 19/21 GCA GTT GCA GCA GCA GCA GCA
179061 CAG * 7 19/21 CAG CAG CTG CAG CAG CAG CAC
179094 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAA CAA
179928 CAG * 8 22/24 CAG CTG CAG CAG CAG CAA CAG CAG
179981 GCA * 7 19/21 GCA GCA GCA GCA GCA GCA ATA
180066 AGC * 8 22/24 AGC AGC AGC ATC AGC AGC AGC ATC
180552 CAG * 7 19/21 CAG CAG CAT CAG CAG CAG CAT
194262 AAT * 8 23/24 AAT TAT AAT AAT AAT AAT AAT AAT
195940 CAT * 16 44/48 CAT CAT CAT CAT CAT CAT CAT CAC CAT CAT CAT CAT CAT CAT CTT GAA
199813 CCG * 11 31/33 CCG CCG CCG CCG CCG CCG CCG CCG TCG CCG TCG
201546 TGT * 7 19/21 TGT TGT TGT TGT TGT TTT TGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 216949
Total number of repeats detected.............. 24
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 1 0 1 0 0 0 0 0 0 0 0 0 0
AGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TAT 1 0 1 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
GCT 2 1 0 1 0 0 0 0 0 0 0 0 0
GCG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 0 0 0 1 0 0 0 0 0 0 0 0
CAG 5 5 0 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CCG 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 1 ATT + 1 TTA + 1 TAT = 4
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 1 TGT = 1
0 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
2 AGC + 2 GCA + 5 CAG + 2 GCT + 0 CTG + 0 TGC = 11
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 1 CCA + 1 CAC + 1 GGT + 1 GTG + 1 TGG = 5
0 GGC + 1 GCG + 0 CGG + 0 GCC + 1 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7316095|gb|AE002620.1|AE002620 Drosophila melanogaster genomic scaffold 142000013386037, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7295611|gb|AE003572.1|AE003572 Drosophila melanogaster genomic scaffold 142000013386037 section 5 of 5, complete sequence
Position Repeat Coverage Repeat
2237 CTG * 15 42/45 CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG ATG CTG ATG CTG CAG
17612 ATA * 11 31/33 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATC AAA
18081 CAG * 7 19/21 CAG CAG CAG CAG CAG CAG AAC
21033 CAT * 10 27/30 CAT CAT CAT CAT CAT CAC CAC CAT CAT CAA
35917 ATG * 7 19/21 ATG ACG ATG GTG ATG ATG ATG
39198 ATG * 7 19/21 ATG CTG ATG ATG ATG CTG ATG
63344 CCT * 7 19/21 CCT CCC CCT CCT CCT CCT CCA
65250 AAG * 7 19/21 AAG AAG AAG AAG AAG AAG CGG
70148 CCA * 11 30/33 CCA CTA CCA TCA CCA CCA CCA CCA CCA CCA CTA
-----------------------------------------------------------------------------------------
Total sequence length......................... 79498
Total number of repeats detected.............. 9
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 0 1 0 0 0 0 0 0 0 0 0 0
ATG 2 2 0 0 0 0 0 0 0 0 0 0 0
CAT 1 0 1 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 0 0 1 0 0 0 0 0 0 0 0 0
CCA 1 0 1 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
1 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 1
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
2 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 1 CCT + 0 CTC + 0 TCC = 1
0 AGC + 0 GCA + 1 CAG + 0 GCT + 1 CTG + 0 TGC = 2
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 1 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295580|gb|AE003571.1|AE003571 Drosophila melanogaster genomic scaffold 142000013386037 section 4 of 5, complete sequence
Position Repeat Coverage Repeat
6364 ATA * 12 34/36 ATA ATA ATA ATA CTA ATA ATA ATA ATA CTA ATA ATA
17066 AGC * 8 22/24 AGC AGC AGC AGC AAC AAC AGC AGC
17092 CAG * 16 44/48 CAG CAG CAG CAG CAG CAG CAG CAG CAA CAG CAT CTG CAG CAG CAA CAG
17142 GCA * 7 19/21 GCA ACA GCA GCA GCA GCA ACA
18160 CCT * 7 20/21 CCT CCT CCT CCT CCT CCT CAT
27959 GGA * 11 30/33 GGA GCA GGA GGA GAA GGA GGA GGA GGA AGA GGA
42860 GCT * 7 19/21 GCT GCT GCT GCT GCT TTT GCT
56155 CGC * 7 19/21 CGC GGC CGC CGC AGC CGC CGC
56628 TGT * 8 22/24 TGT TGT TGT TGT TGC TGT TGT TAT
56803 CTG * 11 31/33 CTG GTG CTG CTG CTG CTG CTG CTG GTG CTG CTG
69434 CCA * 7 19/21 CCA TTA CCA CCA CCA CCA CCA
80667 TTG * 8 22/24 TTG TTG TTG TTG TTG TTG TTC GTG
80739 TTG * 8 22/24 TTG TTG TTG TTG TTG TTA TTG CTG
80837 CTG * 7 19/21 CTG ATG TTG CTG CTG CTG CTG
84269 TGT * 7 19/21 TGT TGC TGT TGT TGT TGT TCT
89786 TAG * 7 19/21 TAG TAA TAG TAA TAG TAG TAG
111524 CAA * 7 19/21 CAA AAA CAA CAA CCA CAA CAA
120400 AAC * 8 22/24 AAC AAC AAC AAG AAC AAC AAC AAT
131013 GCA * 7 19/21 GCA GCA GCA GCA GCT GCT GCA
132652 TTC * 7 19/21 TTC GTC TTC TTC TTC TTC TTG
133177 GCA * 8 22/24 GCA GCA ACA GCG GCA GCA GCA GCA
134412 GCA * 8 22/24 GCA TCA GCA TCA GCA GCA GCA GCA
134635 CAG * 11 30/33 CAG CAG CAG CAG CAA CAG CAA CAG CAG CAG CAA
134737 CAG * 7 19/21 CAG CAT CAG CAG CAG CAG CAA
143888 AGC * 12 33/36 AGC AGC AGC AGC AGC AAC AGC AGC AGC ACC AGC AAC
144013 CAG * 7 19/21 CAG CAG CAG CAG CAG CAT CAC
147605 CAC * 12 34/36 CAC CAC CAC CAC CAC CAC CAC CAC CAC CCA CAC CAC
149446 ACC * 7 19/21 ACC ACC ACA ACG ACC ACC ACC
149668 AGC * 9 25/27 AGC AGC AGC AAC AGC AGC AGC ACC AGC
158159 CTG * 10 27/30 CTG CTG CTG CTG CTG CTG CTG CTG CTC ATC
158834 GCT * 9 25/27 GCT GTT GCT GTT GCT GCT GCT GCT GCT
213497 TGA * 7 19/21 TGA CGA CGA TGA TGA TGA TGA
264229 TGC * 19 52/57 TGC TGC TAC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGT TGT TGC TGC TGC TGG CGC
281340 CCT * 7 19/21 CCT CCT CCT CCT CCT CTG CCT
281780 GCA * 8 22/24 GCA ACG GCA GCA GCA GCA GCA GCA
283450 TCC * 15 41/45 TCC TGC TCC TCC TCA TCC TCC TCC TCC TCC TCC TTC TCC TTC TCC
292130 AGC * 7 19/21 AGC AGC AGC AGT AGC AGG AGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 302246
Total number of repeats detected.............. 37
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 0 1 0 0 0 0 0 0 0 0 0 0
AGC 4 3 1 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAG 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TTC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 1 0 0 0 0 1 0 0 0 0 0 0 0
TCC 1 0 0 1 0 0 0 0 0 0 0 0 0
GGA 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 5 5 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 4 2 1 0 1 0 0 0 0 0 0 0 0
CAC 1 0 1 0 0 0 0 0 0 0 0 0 0
CTG 3 1 2 0 0 0 0 0 0 0 0 0 0
CGC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 1 TTC + 0 TCT = 1
1 AAC + 0 ACA + 1 CAA + 0 GTT + 2 TTG + 2 TGT = 6
0 ATG + 1 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 1 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 1 GGA + 0 GAG + 2 CCT + 0 CTC + 1 TCC = 4
4 AGC + 5 GCA + 4 CAG + 2 GCT + 3 CTG + 1 TGC = 19
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
1 ACC + 1 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 3
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 1 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295563|gb|AE003570.1|AE003570 Drosophila melanogaster genomic scaffold 142000013386037 section 3 of 5, complete sequence
Position Repeat Coverage Repeat
16783 ATC * 7 19/21 ATC AAC ATC ATT ATC ATC ATC
29787 CAT * 17 47/51 CAT CAA CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAA CAT TGT
49470 CGT * 7 19/21 CGT CAT CGT CGT CGT CAT CGT
59898 CTT * 8 22/24 CTT CTT CTT CTT CTT CTT CTT GTG
101297 GAC * 7 19/21 GAC GAC GTC GAC GAC GAC GAG
121166 GTT * 7 19/21 GTT GTC GTT GTT GAT GTT GTT
127301 CAC * 7 19/21 CAC CAC CAC CAC TAC CAC CAA
206302 CAG * 7 19/21 CAG CAG CAG CAG TAG CAG TAG
206344 CAA * 7 19/21 CAA CAG CAA CAA CAG CAA CAA
214362 TGT * 7 19/21 TGT TAT TGT TGC TGT TGT TGT
214383 TGC * 8 22/24 TGC TGC TGC TGT TGC TGC TGC CGC
219375 TAT * 7 19/21 TAT TAT TAT TAT TAT TAT TTC
219908 TGC * 12 34/36 TGC TGT TGC TTC TGC TGC TGC TGC TGC TGC TGC TGC
226841 GCG * 7 19/21 GCG GCG GCT GCT GCG GCG GCG
238840 AAC * 8 22/24 AAC AAC AAC ACC AAC AAC AAC AGC
277018 GAT * 8 23/24 GAT GAT GAT GAT GAT GAT GAT CAT
296655 TGC * 12 33/36 TGC TGC TGT TGC TGC TGC TGC TGC TGC TGC GGC GGC
296906 CAG * 14 38/42 CAG CAG CAG CGG CAG CAG CAG CAG CAA CAG CAG CAG CAA CAT
-----------------------------------------------------------------------------------------
Total sequence length......................... 299012
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 3 1 2 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 0 0 0 1 0 0 0 0 0 0 0 0
CAG 2 1 0 1 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CGT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 1
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 1
1 AAC + 0 ACA + 1 CAA + 1 GTT + 0 TTG + 1 TGT = 4
0 ATG + 0 TGA + 1 GAT + 1 CAT + 1 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 2 CAG + 0 GCT + 0 CTG + 3 TGC = 5
0 ACG + 0 CGA + 1 GAC + 1 CGT + 0 GTC + 0 TCG = 2
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 1 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295529|gb|AE003569.1|AE003569 Drosophila melanogaster genomic scaffold 142000013386037 section 2 of 5, complete sequence
Position Repeat Coverage Repeat
7307 CAG * 10 28/30 CAG CAA CAG CAG CAG CAG CAG CAG CAG CAA
18992 GGC * 7 19/21 GGC GGC GTC GGC GGC GGC GTC
19042 CGG * 7 19/21 CGG CGG CGG CGG CGG CGG CCT
24501 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CAA
26412 CTC * 7 19/21 CTC CTC GTG CTC CTC CTC CTC
61368 ATA * 88 239/264 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AGA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AGA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA GTA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA CTA ATA ATA ATA ATT ATA ATA ACC AAT AAG TGC TTG GAT TCA GTA GCG
90013 TGC * 11 30/33 TGC TGC TGC TGC TGC TGC TGC TGC TGG TTC TTC
98142 TAT * 9 25/27 TAT TAA TAT TTT TAT TAT TAT TAT TAT
98172 TAT * 15 41/45 TAT TAT TAT TAT TAT AAC TAT TAT TAT TAT TAT TAT AAT AAT TAT
98219 TTA * 8 22/24 TTA TTA TTA ATA TTA TTA TTA TAA
98244 TAT * 7 20/21 TAT TTT TAT TAT TAT TAT TAT
103925 TCC * 8 22/24 TCC TCC TGC TCC TCC TCC TCC GCC
108649 TCT * 8 22/24 TCT TCT TCT TCT TCT TCT TCT TTC
119680 GCT * 12 34/36 GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GTC
120417 TGC * 10 28/30 TGC TGC CTC TGC TGC TGC TGC TGC TGC TGC
137096 GTT * 7 19/21 GTT GTT GTT CTA GTT GTT GTT
137129 GTT * 9 25/27 GTT GTT GTT GTT GTT GTT GTT GTT TGT
147143 CTC * 9 26/27 CTC CTC CTC CTC CTC CTC GTC CTC CTC
147319 AGC * 8 22/24 AGC TGC AGC AGG AGC AGC AGC AGC
152711 TTA * 10 28/30 TTA TTA TTA TTA TTA TTA TTA TTA TTA GTT
210853 ATG * 7 20/21 ATG ATG ATA ATG ATG ATG ATG
212754 TAT * 7 19/21 TAT TAT TAT TAA TAT TAT TTT
235672 TTG * 7 19/21 TTG TTT TTG TTG TTG TTG ATG
252985 CAC * 7 20/21 CAC CAA CAC CAC CAC CAC CAC
257114 ATA * 8 22/24 ATA ATA ATA ATA ATA ATA ATA CAA
267931 GCT * 15 41/45 GCT GCC GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT TTG
-----------------------------------------------------------------------------------------
Total sequence length......................... 292406
Total number of repeats detected.............. 26
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 2 1 0 0 0 0 0 0 0 0 0 0 1
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 4 3 0 1 0 0 0 0 0 0 0 0 0
TTA 2 1 1 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 0 2 0 0 0 0 0 0 0 0 0 0
TCT 1 1 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 2 2 0 0 0 0 0 0 0 0 0 0 0
GGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 2 0 1 1 0 0 0 0 0 0 0 0 0
CAG 2 1 1 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 2 2 0 0 0 0 0 0 0 0 0 0 0
CGG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 2 ATA + 0 TAA + 0 ATT + 2 TTA + 4 TAT = 8
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 1 TCT = 1
0 AAC + 0 ACA + 0 CAA + 2 GTT + 1 TTG + 0 TGT = 3
1 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 2 CTC + 1 TCC = 3
1 AGC + 0 GCA + 2 CAG + 2 GCT + 0 CTG + 2 TGC = 7
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 1
1 GGC + 0 GCG + 1 CGG + 0 GCC + 0 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295493|gb|AE003568.1|AE003568 Drosophila melanogaster genomic scaffold 142000013386037 section 1 of 5, complete sequence
Position Repeat Coverage Repeat
19309 ATG * 7 19/21 ATG ATG ATG ACG ATG ATG ATA
39990 CAA * 8 22/24 CAA CAA CAC CAA CAA TAA CAA CAA
40030 AAC * 9 25/27 AAC AAC AGC AAC AAC AAC AAC AAC AAT
45347 CAA * 14 40/42 CAA CAA TAA CAA CAA CAA CAT CAA CAA CAA CAA CAA CAA CAA
103770 TGT * 10 28/30 TGT TGT TGT TGT TGT TGT TAT TGT TGC TGT
107258 GAT * 8 22/24 GAT GAT GAC AAT GAT GAT GAT GAT
107464 TTA * 7 19/21 TTA TTA TTA TTA TTA TTT TTT
150593 CCT * 7 19/21 CCT CCT CCT CAT CAT CCT CCT
151187 TGT * 7 20/21 TGT TGT TGC TGT TGT TGT TGT
166651 GGT * 10 27/30 GGT GGT GGT GGT GGT GGT GGT GCT GCT GCT
166681 GCT * 8 22/24 GCT GCT GCT GCT GCT GTT GCA GCT
170500 TTG * 9 25/27 TTG CTG TTG TTG TTT TTG TTG TTG TTG
187094 GCA * 9 25/27 GCA GCA GCA GCA GTC GCA GCA GCA GCA
187645 GCA * 7 19/21 GCA GCA GCA GCA ACA GCT GCA
187697 CAG * 12 33/36 CAG CTG CAG CAG CAC CAG CAG CAG CAG CAG CAG CAA
241098 AAC * 8 22/24 AAC AAA AAC AAC AGC AAC AAC AAC
256948 GCT * 7 19/21 GCT GCT GCT GCT GCC GCT GCC
-----------------------------------------------------------------------------------------
Total sequence length......................... 292926
Total number of repeats detected.............. 17
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 2 2 0 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 2 1 1 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 2 1 0 1 0 0 0 0 0 0 0 0 0
CAG 1 0 1 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
2 AAC + 0 ACA + 2 CAA + 0 GTT + 1 TTG + 2 TGT = 7
1 ATG + 0 TGA + 1 GAT + 0 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 1 CCT + 0 CTC + 0 TCC = 1
0 AGC + 2 GCA + 1 CAG + 2 GCT + 0 CTG + 0 TGC = 5
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 1 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7316092|gb|AE002629.1|AE002629 Drosophila melanogaster genomic scaffold 142000013386033, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7295629|gb|AE003574.1|AE003574 Drosophila melanogaster genomic scaffold 142000013386033 section 2 of 2, complete sequence
Position Repeat Coverage Repeat
87284 TAT * 8 22/24 TAT TAT TAT TAT TAT TAT TAA TAG
87351 TAT * 7 19/21 TAT TAT TAT TAT TAT TTT TGT
87372 ATT * 10 28/30 ATT ATT ATT ATT ATT ATT ATT ATT ATA GTT
87409 ATT * 7 19/21 ATT ATT ATT ATT ATA ATT ATA
105132 AAT * 8 22/24 AAT AAT AAT AAT AAT AAA AGT AAT
105159 AAT * 11 31/33 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAA AAG
111525 ATG * 7 19/21 ATG ATG ATG ATG ATG ACT ATG
128584 TAT * 7 19/21 TAT TAT TAT TAT TAT ATT TAT
164399 CGA * 11 30/33 CGA GGA CGA CGA TGA CGA CGA CGA CGA GGA CGA
170713 CAA * 8 23/24 CAA CAA CAA CAA CAA CAA CAA CAG
177212 TGC * 11 30/33 TGC TGC TGC TGC TGC TGC TGC TGA GGC TGC TGG
177382 CTC * 7 19/21 CTC CTC CTG CTG CTC CTC CTC
226876 AAC * 7 19/21 AAC AGC AAC AAC AAC AGC AAC
243766 TGG * 7 19/21 TGG TGG TGC TGT TGG TGG TGG
245031 GGT * 10 27/30 GGT GGT GGA GGT GGT GGC GGT GGT GGT GGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 274456
Total number of repeats detected.............. 15
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 2 1 1 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 2 1 1 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 3 3 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 0 1 0 0 0 0 0 0 0 0 0 0
GGT 1 0 1 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CGA 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
2 AAT + 0 ATA + 0 TAA + 2 ATT + 0 TTA + 3 TAT = 7
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 1 CAA + 0 GTT + 0 TTG + 0 TGT = 2
1 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 1
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 1 TGC = 1
0 ACG + 1 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 1 GGT + 0 GTG + 1 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295620|gb|AE003573.1|AE003573 Drosophila melanogaster genomic scaffold 142000013386033 section 1 of 2, complete sequence
Position Repeat Coverage Repeat
56716 TAT * 7 19/21 TAT TAT TAT TAT TAT TAT ATT
69859 TAA * 7 20/21 TAA TAA TAA TAA TAA TAA AAA
84524 ATT * 7 19/21 ATT ATT AGT ATT ATA ATT ATT
103012 CTG * 12 34/36 CTG TCG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG
117891 CCA * 7 19/21 CCA CCA CCC CCA CCA CCC CCA
121875 GGT * 7 20/21 GGT GGT GGT GGT GGT GCT GGT
135996 CAA * 7 19/21 CAA CAT CAA CAA CAT CAA CAA
138977 CAG * 8 23/24 CAG AAG CAG CAG CAG CAG CAG CAG
141008 ACC * 7 19/21 ACC AGC AAC ACC ACC ACC ACC
141993 CCA * 8 23/24 CCA CCA CCA CCA CCA CCA CCA CAA
152502 CAT * 7 19/21 CAT CAT CAT CAT CCT CAT CAG
165540 ATT * 14 38/42 ATT ATT ATT ATT ATT ATT ATT ATT ACT ATT ATT ATA AAT ATA
170963 AGC * 7 21/21 AGC AGC AGC AGC AGC AGC AGC
186455 CAG * 7 19/21 CAG CAG CAG CAG CAA AAG CAG
187003 ACG * 8 22/24 ACG ACT ACG ATG ACG ACG ACG ACG
214228 ATT * 56 152/168 ATT TTT ATT ATT ATT ATT AAT ATT ATT TTT ATT ATT ATT ATT AAT ATT ATT TTT ATT ATT ATT GTT ATT ATT GTT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ACT TCT ATT ATG ATT ATT ATA ATT ATT ATT ATG TAA
214396 TAT * 8 22/24 TAT AAT TAT TAT TAT TTT TAT TAT
214445 TAT * 14 39/42 TAT TAT TAT TAT TAT CAT TAT TAA TAT TAT TAT TAT TTT TAT
214487 TTA * 19 53/57 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTT TCA TTA TTA TAA TTA TTA TTT
-----------------------------------------------------------------------------------------
Total sequence length......................... 262131
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATT 3 1 0 1 0 0 0 0 0 0 0 0 1
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACG 1 1 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 3 2 0 1 0 0 0 0 0 0 0 0 0
TTA 1 0 0 0 0 1 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CTG 1 0 1 0 0 0 0 0 0 0 0 0 0
CCA 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 3 ATT + 1 TTA + 3 TAT = 8
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 1 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 0 GCA + 2 CAG + 0 GCT + 1 CTG + 0 TGC = 4
1 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 1
1 ACC + 2 CCA + 0 CAC + 1 GGT + 0 GTG + 0 TGG = 4
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7288912|gb|AE002813.1|AE002813 Drosophila melanogaster genomic scaffold 142000013385227, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 2620
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289135|gb|AE002822.1|AE002822 Drosophila melanogaster genomic scaffold 142000013385417, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1638
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289301|gb|AE002567.1|AE002567 Drosophila melanogaster genomic scaffold 142000013385554, complete sequence
Position Repeat Coverage Repeat
23030 TCA * 8 23/24 TCA TCA TCA TCA TCA TCA TAA TCA
28964 GAT * 7 19/21 GAT AAT GAT GAT GAT GAT GTT
40174 TGC * 7 19/21 TGC TGC TGC TGT TGC TGC TGT
40212 CTG * 10 27/30 CTG CTG TTG CTG CTT CTG CTG CTG CTG TTG
43205 TGC * 7 19/21 TGC TGC TGC TGT TGC TGC TGT
43243 CTG * 9 25/27 CTG CTG TTG CTG CTT CTG CTG CTG CTG
-----------------------------------------------------------------------------------------
Total sequence length......................... 84373
Total number of repeats detected.............. 6
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 2 1 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 1 GAT + 0 CAT + 0 ATC + 1 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 2 CTG + 2 TGC = 4
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7289214|gb|AE002930.1|AE002930 Drosophila melanogaster genomic scaffold 142000013385493, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1282
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289226|gb|AE003341.1|AE003341 Drosophila melanogaster genomic scaffold 142000013385503, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1242
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7316107|gb|AE002566.1|AE002566 Drosophila melanogaster genomic scaffold 142000013386054, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7291169|gb|AE003451.1|AE003451 Drosophila melanogaster genomic scaffold 142000013386054 section 35 of 35, complete sequence
Position Repeat Coverage Repeat
15028 TGC * 7 19/21 TGC TGC TGC TGC TGC TGC TCG
18369 ATG * 7 20/21 ATG ATG ATG ATG CTG ATG ATG
20784 ATT * 11 30/33 ATT ATT ATT ATT ATT ATT GTT ATT AAT GTT ATT
20817 GTT * 11 30/33 GTT ATT ATT GTT GTT GTT GTT GTT GTT TTT GTT
20998 GTT * 7 19/21 GTT GTT GTT GCT GTT GCT GTT
30425 CAA * 7 19/21 CAA CAA CAA CAG CAA CAA CAC
31948 TGT * 7 19/21 TGT TGT TCT TCT TGT TGT TGT
46828 ATA * 7 19/21 ATA ATA ATA ATG AAA ATA ATA
52346 TCG * 8 22/24 TCG TCG TCG TCC TCG TCG TCG TCC
52628 TGC * 8 22/24 TGC AGC TGC TGC TGC TGC TGC TGT
52655 TGC * 8 22/24 TGC TGC TGT TGC TGC TGC TGC TGG
52775 TGC * 7 19/21 TGC TGT TGC TGC TGA TGC TGC
52873 CTG * 7 19/21 CTG TTG CTG CTG CTG TTG CTG
56531 TCG * 8 22/24 TCG TCA TCG TCG TCG TCC TCG TCG
56817 CTG * 11 30/33 CTG CTG CTG CTG CGG CTG CTG CTG CCG CCG CTG
59783 AGG * 10 27/30 AGG AGG AGG AGG AGA AGG AGA AGG AGG CGG
62001 TGC * 12 33/36 TGC TGC TGT TGC TGC TGC TGC TGA TGC TGG TGC TGC
62346 GCT * 7 19/21 GCT GCT GCC GCC GCT GCT GCT
62499 TCC * 7 19/21 TCC TCG TCC TCC TCC TCC CCC
62640 TGC * 8 22/24 TGC TGC TGC TGC TCC TGG TGC TGC
62793 TTG * 8 22/24 TTG TTG TTG TTA TTA TTG TTG TTG
62943 TCC * 7 19/21 TCC TGC TCC TCC TCC TCC TCT
63075 TTG * 10 28/30 TTG TTA TTG TTG TTG TTG TTA TTG TTG TTG
63180 GCT * 10 27/30 GCT GCT GCT GCA GCT GCT GCT GCG GCT GCC
63385 TGC * 20 55/60 TGC TGC TGC TGC TGC TGC TGC TAC TGC AGC TGC TGC TGC TGC TGC TGC TGC GAC TGC AGC
63507 GTT * 7 19/21 GTT GTT GTT GTT GTT GAT GCT
63673 TGC * 8 22/24 TGC TGG TGC TGC TGC TGT TGC TGC
63767 CTT * 7 19/21 CTT CTG CTT CTG CTT CTT CTT
66205 CAG * 13 36/39 CAG CAG CAG TAG CAG TAG CAG CAG CAG CAG CAG CGG CAG
83790 GTC * 7 19/21 GTC CTC GTC GTC GTC GTC GTT
90698 GCA * 8 22/24 GCA GCA GCA GCA GTA GCA GCA ACA
116195 CAA * 7 19/21 CAA CAA CAA TAA CAA TAA CAA
119044 GCA * 9 25/27 GCA GCA GAA GCA GCA GCA GCA GCA ACA
125761 GAT * 11 30/33 GAT GAT GAT GAT GAT GAT GAT GAT GCT GGT GGT
145439 CAG * 15 41/45 CAG CAG CAG CAG CAG CAG CAA CAG CAG AAG CAA CAG CAG CAG CAA
147011 CAC * 7 19/21 CAC CAT CAC CAC CAC CAT CAC
147038 CAG * 11 31/33 CAG CAG CAG CAG CAG CAG CAG CAG CAG GAC CAG
147073 GCA * 7 19/21 GCA GCA GCA GCC GCA TCA GCA
147169 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CAA
147200 CAG * 11 30/33 CAG CAA CAC CAG CAG CAG CAG CAG CAG CAA CAG
147326 CAG * 7 19/21 CAG CAG CAA CAG CAA CAG CAG
147350 CAG * 7 19/21 CAG CAG CAA CAG CAG CAA CAG
147701 CAC * 8 22/24 CAC CAC CAC CAT CAT CAC CAC CAC
147728 CAG * 10 27/30 CAG CAG CAT CAG CAG AAG CAG CAG CAG CCG
148124 CAG * 17 47/51 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAA CAA CAG CAG CAG CAA CAT
148307 CAG * 12 33/36 CAG CAA CAT CAG CAG CAG CAG CAG CAG CAG CAG CAA
148667 CAG * 8 22/24 CAG CAG CAG CAG CAG CAA CAG CGG
153594 CGG * 7 21/21 CGG CGG CGG CGG CGG CGG CGG
161895 CAT * 7 19/21 CAT CAT CAT CAT CTT CAT CTT
162084 GCT * 7 19/21 GCT GTT GGT GCT GCT GCT GCT
163574 GCT * 13 36/39 GCT ACT ACT GCT GCT GCT GCT GCT GCT GCT ACT GCT GCT
164400 TGA * 7 19/21 TGA TGA TGA TGG TGA TGA TGG
164427 TGA * 7 19/21 TGA TGG TGA TGA TGA TGA TGT
169250 CAT * 9 25/27 CAT CAT CAT CAT CAT CAT CAT CGG CAT
173599 AGG * 10 27/30 AGG AGG AGG AGG AGG AGG AGG AGG GAG AGA
198446 AAC * 7 19/21 AAC AAT AAC AAC AAC AGC AAC
199885 AGC * 7 19/21 AGC AGC AAC AGC AGC AGT AGC
202634 AAC * 7 19/21 AAC AAA AAC AAC AAC AAC AGC
213764 TGC * 8 23/24 TGC TGC TGC TGC TGC TGC TGC TGG
217989 GCA * 7 19/21 GCA GCA ACA ACA GCA GCA GCA
219016 TTA * 7 19/21 TTA TTA TTA TGA TTA TTA TTG
-----------------------------------------------------------------------------------------
Total sequence length......................... 220623
Total number of repeats detected.............. 61
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 2 2 0 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 1 0 1 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 2 0 2 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 2 1 1 0 0 0 0 0 0 0 0 0 0
TGA 2 2 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 9 7 1 0 0 1 0 0 0 0 0 0 0
TCG 2 2 0 0 0 0 0 0 0 0 0 0 0
TCC 2 2 0 0 0 0 0 0 0 0 0 0 0
GAT 1 0 1 0 0 0 0 0 0 0 0 0 0
GTT 3 2 1 0 0 0 0 0 0 0 0 0 0
GTC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 4 4 0 0 0 0 0 0 0 0 0 0 0
GCT 4 2 1 1 0 0 0 0 0 0 0 0 0
CAA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 11 4 4 2 1 0 0 0 0 0 0 0 0
CAC 2 2 0 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 2 1 1 0 0 0 0 0 0 0 0 0 0
CGG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 1 ATT + 1 TTA + 0 TAT = 3
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 1
2 AAC + 0 ACA + 2 CAA + 3 GTT + 2 TTG + 1 TGT = 10
1 ATG + 2 TGA + 1 GAT + 2 CAT + 0 ATC + 0 TCA = 6
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
2 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 2 TCC = 4
1 AGC + 4 GCA + 11 CAG + 4 GCT + 2 CTG + 9 TGC = 31
0 ACG + 0 CGA + 0 GAC + 0 CGT + 1 GTC + 2 TCG = 3
0 ACC + 0 CCA + 2 CAC + 0 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 1 CGG + 0 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7291133|gb|AE003450.1|AE003450 Drosophila melanogaster genomic scaffold 142000013386054 section 34 of 35, complete sequence
Position Repeat Coverage Repeat
5627 TGC * 8 23/24 TGC TGC TGC TGT TGC TGC TGC TGC
5675 TGC * 8 22/24 TGC TGC CGC TGC TGT TGC TGC TGC
5819 TGC * 9 25/27 TGC TGC TGC TGG CGC TGC TGC TGC TGC
12099 CTG * 11 30/33 CTG CTG CGG CTT CTG CTG CTG CTG CTG CTG TTG
25711 TGC * 7 19/21 TGC TGC TGC TGT TGC TGC TGT
25749 CTG * 10 27/30 CTG CTG TTG CTG CTT CTG CTG CTG CTG TTG
28742 TGC * 7 19/21 TGC TGC TGC TGT TGC TGC TGT
28780 CTG * 9 25/27 CTG CTG TTG CTG CTT CTG CTG CTG CTG
50028 TCA * 14 40/42 TCA TCA TCA TCA TCG TCG TCA TCA TCA TCA TCA TCA TCA TCA
50186 TAT * 7 20/21 TAT TAT TAT TAT GAT TAT TAT
61658 CTG * 8 22/24 CTG TTG CTG CTG CTG CTG CTG CAG
71405 CAA * 8 23/24 CAA CAA CAA CAA CAA CAA CAG CAA
72137 AGC * 12 34/36 AGC AGC AAA AGC AGC AGC AGC AGC AGC AGC AGC AGC
83462 TAT * 8 22/24 TAT TTT TAA TAT TAT TAT TAT TAT
89561 CAC * 12 33/36 CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC GGG
100677 GTG * 7 19/21 GTG CGG GTG GTG GTG GTG GTG
100754 GGA * 8 22/24 GGA GGA GGA GGA GGA GCA GGA GCA
100778 GCA * 7 20/21 GCA GCA GCA GCA GCA GCA GGA
121887 AGC * 7 19/21 AGC AGC AAC AAC AGC AGC AGC
126242 GCT * 7 19/21 GCT GCT GCC GCC GCT GCT GCT
140241 CCG * 7 19/21 CCG CCG CCG CCG CCA CCG CTG
140353 AAC * 7 19/21 AAC AAC AAC AAC AAC AGC GAC
160940 CAG * 7 19/21 CAG CAG CAG CAG CAG CAG AAA
161460 AAT * 7 19/21 AAT TAT AAT AAT TAT AAT AAT
176539 GCA * 7 19/21 GCA TCA GCA GCA GCA GTA GCA
205589 GCT * 7 19/21 GCT CCT GCT CCT GCT GCT GCT
210783 GAA * 7 20/21 GAA GAA GAA GAA GAA GAA AAA
217948 CTG * 7 19/21 CTG CTG TTG CTG TTG CTG CTG
218115 CTC * 7 20/21 CTC CTC CTC CTC CTC CTC CGC
218220 GCT * 8 22/24 GCT GTT GCT GCT GCT GTT GCT GCT
218249 TGC * 7 19/21 TGC TGC TGC TGC TGC TGA AGC
219576 GCC * 7 19/21 GCC GCT GCC GCC GCC GCC GCT
219814 GCT * 9 25/27 GCT GCT GCT GCT GTT GCT GCT GCT GAT
219891 TGC * 7 19/21 TGC TGC TGC TGT TGC TGC TGG
219936 TGC * 7 19/21 TGC TGC TGC TGC TGC AAC TGC
220175 CTG * 8 22/24 CTG CTG CTG TTG CTG CTG CTG TTG
220408 GCT * 7 19/21 GCT GCT GTT GCT GTT GCT GCT
220569 TGC * 8 22/24 TGC TGC TGC TGT TGC TGC TGC TGA
223056 TGC * 7 19/21 TGC TGC TGC TGT TGC TGC TGA
228748 GAG * 7 19/21 GAG GAG GAG GAG GAC GAG AAG
249713 ATC * 13 36/39 ATC CCC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AGC
251636 TGC * 7 19/21 TGC CGC CGC TGC TGC TGC TGC
260131 CAG * 9 25/27 CAG CAG TAG CAG CAG CAG CAA CAG CAG
264560 GCA * 7 19/21 GCA GCA GCA GCA GCA GCC GCG
278024 CAT * 11 30/33 CAT CAT CAC CAT CAT CAT CAT CAT CAC CAT AAT
282196 ACA * 9 25/27 ACA ACA ACA ACA ACA ACG ACA GCA ACA
284821 CAA * 8 22/24 CAA CAG CAA CAA CAA CAA CAA AAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 300732
Total number of repeats detected.............. 47
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 0 0 1 0 0 0 0 0 0 0 0 0
AGC 2 1 1 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 11 11 0 0 0 0 0 0 0 0 0 0 0
TCA 1 0 0 1 0 0 0 0 0 0 0 0 0
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 3 3 0 0 0 0 0 0 0 0 0 0 0
GCT 5 5 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAT 1 0 1 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CAC 1 0 1 0 0 0 0 0 0 0 0 0 0
CTG 6 4 2 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 2 TAT = 3
0 AAG + 0 AGA + 1 GAA + 0 CTT + 0 TTC + 0 TCT = 1
1 AAC + 1 ACA + 2 CAA + 0 GTT + 0 TTG + 0 TGT = 4
0 ATG + 0 TGA + 0 GAT + 1 CAT + 1 ATC + 1 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 1 GAG + 0 CCT + 1 CTC + 0 TCC = 3
2 AGC + 3 GCA + 2 CAG + 5 GCT + 6 CTG + 11 TGC = 29
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 1 CAC + 0 GGT + 1 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 1 GCC + 1 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7291099|gb|AE003449.1|AE003449 Drosophila melanogaster genomic scaffold 142000013386054 section 33 of 35, complete sequence
Position Repeat Coverage Repeat
48681 CTG * 7 19/21 CTG CTG CTG CTG CTG CTG CAC
48805 TGC * 7 20/21 TGC TGC TGC TGC TGC TGC TGG
50216 GCT * 7 19/21 GCT GTT GCT GCT GCT GCT CCT
51069 TGC * 14 40/42 TGC TGT TGT TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
51548 CTG * 7 20/21 CTG CTG CTG ATG CTG CTG CTG
57523 GCA * 7 19/21 GCA GCA GCA GTA GCA GCG GCA
58594 TGA * 11 30/33 TGA AGA TAA TGA TGA TGA TGA TGA TGA TGA AGA
67014 GTA * 11 30/33 GTA GTA GTA GTA GTA GTA GTA GTT GTA AAA GTA
67049 AGT * 8 22/24 AGT AGT AGT AGT AGT AGT AGC AGA
67075 TAG * 7 19/21 TAG TAG TAG TAG TAC TAG AAG
67102 TAG * 12 33/36 TAG TAG TAG TAG TAG TAG TAG TAG CAG AAT TAG TAG
67183 TAG * 12 33/36 TAG TAG TAG TAG TAG TAG TAG TAG CAG AAT TAG TAG
67324 TAG * 8 22/24 TAG TAG CAG AAG TAG TAG TAG TAG
67955 CAA * 8 22/24 CAA CAA CAA CAA CAA CAA CAT CAC
68937 TGC * 10 28/30 TGC TGC CGC TGC TGC TGC TGC TGT TGC TGC
69581 CAG * 11 30/33 CAG CAG CAG CAG CAG CAG CAA CAA CAG CAG CAA
69749 AAC * 7 19/21 AAC AAC AAT AAA AAC AAC AAC
69773 AGC * 8 22/24 AGC AGC AGC AGC AGC AAC AGC AAC
69808 CAA * 7 19/21 CAA CAA CAA CAA CAG TAA CAA
79801 GCA * 11 30/33 GCA GCA GCA GCA GCA ACA GCA GCA GCA ACA TCA
85719 AAC * 9 25/27 AAC TAC AAC TAC AAC AAC AAC AAC AAC
85782 CAA * 11 30/33 CAA CAA CAA CAA CAA CAA CAA CAG CCA CTA CAA
86143 ACA * 7 19/21 ACA ACA ACA AGC ACA ACA ACA
86328 AAC * 7 19/21 AAC CAC AAC AAC AAC AAC AGC
86352 CAA * 8 22/24 CAA GAA CAG CAA CAA CAA CAA CAA
90297 GAT * 7 19/21 GAT GAG GAT GAA GAT GAT GAT
91391 AAC * 11 30/33 AAC CAC ATC AAC AAC AAC AAC AAC AAC ATC AAC
92635 ATG * 11 30/33 ATG ATA ATG ATG AAG ATG ATG ATG ATG ATG ATA
92967 GAG * 8 22/24 GAG GAG AAG GAG GAG GAG GAG GAA
93004 CAA * 8 22/24 CAA CCA CAA CAA CAA CAA CCA CAA
93197 CAA * 10 27/30 CAA CAG CAA CAA CAA CAA CAA CAA CAC CAC
94056 GAG * 7 19/21 GAG GAG GAA GAC GAG GAG GAG
94098 GAA * 7 19/21 GAA GAA GAG GAT GAA GAA GAA
94771 CAC * 7 19/21 CAC CAC CAT CAC CAG CAC CAC
96599 AAC * 7 19/21 AAC GAC AAC AAC GAC AAC AAC
100257 CAG * 8 22/24 CAG CAA CAG CAG CAG CGG CAG CAG
100394 GCA * 7 19/21 GCA GCA GCA GCA GCA GCA TCC
100445 AGC * 7 19/21 AGC AAC ATC AGC AGC AGC AGC
109608 GTC * 7 19/21 GTC GTC GTC ATC ATC GTC GTC
109640 GGT * 7 19/21 GGT GGT GGT GGT GGT GCT GCT
111575 AAC * 7 19/21 AAC GAC AAC AAC AAC AAC GAC
120229 TTG * 7 19/21 TTG TTG AAG TTG TTG TTG TTG
130627 TCC * 8 22/24 TCC TCC TCC TCC TCC TCC ACC ACC
155723 ACA * 7 20/21 ACA ACA ATA ACA ACA ACA ACA
159510 AAT * 7 19/21 AAT AAT AAT AAT AAT AAA AAA
163081 CTG * 10 28/30 CTG TTG TTG CTG CTG CTG CTG CTG CTG CTG
165125 CAG * 12 33/36 CAG CAG CAG CAG CAG TCG CAG CAG CAG CAG CAG CAA
167084 GTT * 7 19/21 GTT GTT GTT TTT GTT CTT GTT
167109 TTG * 10 27/30 TTG TTG TTG TTG CTT TTG TTG TTG TTG TGG
198765 GAT * 10 28/30 GAT AAC GAT GAT GAT GAT GAT GAT GAT GAT
200659 CAG * 11 30/33 CAG CAG CAG CAG CAG CAG CAG CAG CAG TGG CAA
205398 GCT * 7 20/21 GCT GCT GCT GCT GCT GCT GCC
208599 TGC * 9 25/27 TGC TGC TGC TGT TGC TAC TGC TGC TGC
225785 AAG * 7 19/21 AAG AAG AAG AGG AAG AGG AAG
233445 CAA * 12 33/36 CAA CAA CAA CAA CAA CAA TAA CAA TAA CAA CAA CAG
237369 TGA * 10 27/30 TGA GGA TGA TGT TGA TGA TGA TGA TGA TGT
239648 CAG * 7 19/21 CAG CCG GAG CAG CAG CAG CAG
246714 TTG * 8 23/24 TTG TCG TTG TTG TTG TTG TTG TTG
257850 GCC * 8 22/24 GCC GCT GCC GCC GCC GCC GCC GCT
271023 CAA * 7 20/21 CAA CAA CAA CAA CAA CAA CAT
273903 CAG * 11 31/33 CAG CAG CAG CAG CAG CAG CAG CAG CAG CTC CAG
277986 ACC * 8 23/24 ACC ACC ACC ACC ACC ACC ACC AAC
282758 CCG * 7 19/21 CCG CCG CCG CCG CCG CCA CCA
285441 TTG * 8 22/24 TTG TTC TTG TTG TTG TTG TTG TTC
287885 TTG * 8 22/24 TTG TTG TTG TTG TTG TTG CTG TTA
289486 TTG * 7 19/21 TTG TTG TTG TTG TTA TTG TTA
289627 TGC * 12 33/36 TGC TGC TGT TGT TGC TGC TGC TGC TGC TGT TGC TGC
293893 TTG * 9 25/27 TTG TTG TTG TTG TTA TTG TTA TTG TTG
295893 ACA * 7 19/21 ACA ACA ACA ACA ACA ACG AGA
-----------------------------------------------------------------------------------------
Total sequence length......................... 299786
Total number of repeats detected.............. 69
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 6 5 1 0 0 0 0 0 0 0 0 0 0
ATG 1 0 1 0 0 0 0 0 0 0 0 0 0
AGT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 2 0 0 0 0 0 0 0 0 0 0 0
ACA 3 3 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAG 4 2 2 0 0 0 0 0 0 0 0 0 0
TTG 7 6 1 0 0 0 0 0 0 0 0 0 0
TGA 2 0 2 0 0 0 0 0 0 0 0 0 0
TGC 5 2 2 1 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 2 1 1 0 0 0 0 0 0 0 0 0 0
GAG 2 2 0 0 0 0 0 0 0 0 0 0 0
GTA 1 0 1 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTC 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 3 2 1 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 8 5 3 0 0 0 0 0 0 0 0 0 0
CAG 6 2 4 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 3 2 1 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
1 AAG + 0 AGA + 1 GAA + 0 CTT + 0 TTC + 0 TCT = 2
6 AAC + 3 ACA + 8 CAA + 1 GTT + 7 TTG + 0 TGT = 25
1 ATG + 2 TGA + 2 GAT + 0 CAT + 0 ATC + 0 TCA = 5
1 AGT + 1 GTA + 4 TAG + 0 ACT + 0 CTA + 0 TAC = 6
0 AGG + 0 GGA + 2 GAG + 0 CCT + 0 CTC + 1 TCC = 3
2 AGC + 3 GCA + 6 CAG + 2 GCT + 3 CTG + 5 TGC = 21
0 ACG + 0 CGA + 0 GAC + 0 CGT + 1 GTC + 0 TCG = 1
1 ACC + 0 CCA + 1 CAC + 1 GGT + 0 GTG + 0 TGG = 3
0 GGC + 0 GCG + 0 CGG + 1 GCC + 1 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7291077|gb|AE003448.1|AE003448 Drosophila melanogaster genomic scaffold 142000013386054 section 32 of 35, complete sequence
Position Repeat Coverage Repeat
6043 CCT * 7 19/21 CCT CCA CCA CCT CCT CCT CCT
6067 CCT * 7 19/21 CCT GCT CCT CCT CCT CCA CCT
19363 CAA * 7 20/21 CAA CAA CAA CAA CAA CAA CGA
20188 CAA * 7 19/21 CAA CAG TAA CAA CAA CAA CAA
27824 TTG * 7 19/21 TTG ATT TTG TTG TTG TTG TTG
31333 TGG * 7 19/21 TGG TGG TGG TGC TGG TGC TGG
31863 TGC * 8 22/24 TGC TGT TGC TGC TGT TGC TGC TGC
32658 CTG * 7 20/21 CTG CTG CTG TTG CTG CTG CTG
32757 CTG * 11 30/33 CTG TTG CTG TTG CTG CTG CTG CTG CTG CTG TTG
39476 CCA * 7 20/21 CCA CCA CCA CCA CCA CCA CCG
40054 CTG * 12 33/36 CTG CTG CTG CTG TTG TTG CTG CTG CTG CTG CTG TTG
40141 CTG * 7 19/21 CTG CTG CTG CTG CTG TTG TTG
40658 TGC * 7 19/21 TGC TGC TGC TGT TGC TGC TGG
41728 CTG * 9 25/27 CTG CTG TTG CTG CTG CTG CTG CTG TTG
41910 GCT * 7 19/21 GCT GCT GGT TCT GCT GCT GCT
41936 TGC * 7 19/21 TGC TGC TGC TGT TGC TGC TGA
42472 CTG * 7 20/21 CTG CTG CTG TTG CTG CTG CTG
42504 GCT * 8 23/24 GCT GCT GTT GCT GCT GCT GCT GCT
42764 TGC * 8 22/24 TGC TGC TGT TGC TGC TGC TGT TGC
44783 TTG * 7 19/21 TTG TTG CAG TTG TTG TTG TTG
45102 CTC * 7 19/21 CTC CTC CTG CTC CTG CTC CTC
45215 TGC * 8 22/24 TGC TGC TGC TGC TGA TGC TGC TGT
45256 CTG * 7 20/21 CTG CTG CTG CTG CTG CTG CCG
45766 TGC * 7 19/21 TGC TGC TGC TGC TGC TGC CGA
52552 ATG * 7 19/21 ATG ATG ATG ATG ATG ATC ATA
55374 AAC * 8 22/24 AAC GAC AAC AAC AAC AGC AAC AAC
56523 CAG * 7 19/21 CAG CAA CAG CAG CAG CAG CAA
56550 CAG * 10 27/30 CAG CAG CAA CAG CAG CAG CAA CAG CAG CAA
60423 AGG * 15 41/45 AGG AGG CGG AGA AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG GTG
62970 ACA * 7 20/21 ACA ACA ACA ACA ACA ACA ACT
66567 AGC * 14 40/42 AGC AGC AGC AGC AGC AGC AGC AGC AGC AGC AGC AGC AAC AGT
75805 AAC * 8 22/24 AAC AAC AAC CAC AAG AAC AAC AAC
76808 TCA * 7 19/21 TCA TCA TCA TCA TCG TCA GCA
78374 GCA * 7 21/21 GCA GCA GCA GCA GCA GCA GCA
81912 TTG * 12 34/36 TTG CTG TTG TTG TTG TTG TTG TTG CTG TTG TTG TTG
82019 TGT * 7 20/21 TGT TGT TGT AGT TGT TGT TGT
84134 CAG * 8 22/24 CAG CAG CAA CAA CAG CAG CAG CAG
85564 CTG * 8 22/24 CTG CTG CCG CTG CTG CTG CTG TTG
86470 CAT * 7 19/21 CAT CAT CAT CAT CAT CAG CAG
86933 TCG * 7 20/21 TCG TCG TCC TCG TCG TCG TCG
90990 TTG * 7 19/21 TTG TTG TTG CTG TTG TTT TTG
92013 CAG * 10 28/30 CAG CAG CAG CAG CAG CAG CCG CAG CAG CAA
92063 GCA * 10 27/30 GCA GCA GCA GCA ACA TCA GCA GCA GCA GGA
98610 GAT * 10 28/30 GAT GAT GAT GGT GAT GAT GAT GAC GAT GAT
100742 ACA * 8 22/24 ACA ACA ACA ACA ACA ACA ACA AAT
101309 AGC * 8 22/24 AGC AAC AGC AGC AGG AGC AGC AGC
101350 CAG * 7 19/21 CAG CAG CAG CAA CAG CGG CAG
113356 TGT * 7 19/21 TGT TGT TGT TGT TAT TGT TGC
114635 CGG * 7 19/21 CGG CGG TGG TGG CGG CGG CGG
116449 CAG * 27 73/81 CAG CAG CAG CAG CAG CAG CAA CAT CAG CAG CAA CAG CAG CAA CAG CAG CAG CAG CAG CAT CAA CAG CAG CAA CAG CAG CAA
116536 CAG * 12 33/36 CAG CAG CAG CAG CAA CAT CAG CAG CAG CAG CAG CAA
132761 TGC * 8 22/24 TGC TGC TGC GGC TGC TTC TGC TGC
132891 TTG * 7 19/21 TTG TTG TTG TTG TTG TTG TAT
135881 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC TTC TTC
153796 TCA * 8 23/24 TCA TCA TCA TCA GCA TCA TCA TCA
177048 CAA * 11 30/33 CAA CAA CAA CAA CAA CAA CAA CGA CAC CAA CAT
186694 GCA * 11 30/33 GCA GCA GCA GCA GCA GCA GCA GCA CCA CCA CCA
186727 CCA * 12 33/36 CCA CCA CCA CCA CCA CCA CCA CCA CCA CTA GCA GCA
191706 ACA * 7 20/21 ACA ACA ACA ACA ACA AAA ACA
193988 ATT * 9 25/27 ATT ATT ATT ATT ATT ATT GTT ATT ACT
198840 GGT * 9 25/27 GGT GGT GGT GGT GGT GGT GGT GGT TAT
205951 TGC * 7 19/21 TGC TGC TGC TGC TGT TGT TGC
209569 TGC * 8 22/24 TGC TGC TGC TGG TGC TTC TGC TGC
210867 GTT * 10 27/30 GTT GTC GTG GTT GTT GTT GTT GTT GTT GCT
217007 TGT * 10 27/30 TGT TGT TGC AGT TGT TGT TGT TGT TGT TGC
219231 AAT * 7 19/21 AAT AAA TAT AAT AAT AAT AAT
230443 ATG * 7 19/21 ATG ATG ATG ATG TTG GTG ATG
238758 CCT * 8 22/24 CCT CCT CCT CCT CCT CCT CCT GCA
241899 ACC * 7 19/21 ACC ACC ACC ACC ACC ACA ACT
254350 CAA * 8 22/24 CAA CAA CAA CAA CAA CAG CAA CGA
254378 AAC * 10 28/30 AAC AAC AAC AAC AAC AAC AAC AAC AGC AAA
266774 GGT * 7 19/21 GGT GGT GGT GGT GGT GAT GGG
271459 CAA * 7 19/21 CAA CAA CAA CGA TAA CAA CAA
276160 AAC * 7 19/21 AAC AAC AAG AGC AAC AAC AAC
-----------------------------------------------------------------------------------------
Total sequence length......................... 310399
Total number of repeats detected.............. 74
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 4 3 1 0 0 0 0 0 0 0 0 0 0
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 2 2 0 0 0 0 0 0 0 0 0 0 0
AGG 1 0 0 1 0 0 0 0 0 0 0 0 0
AGC 2 1 0 1 0 0 0 0 0 0 0 0 0
ACA 3 3 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 5 4 1 0 0 0 0 0 0 0 0 0 0
TGT 3 2 1 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 10 10 0 0 0 0 0 0 0 0 0 0 0
TCA 2 2 0 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 0 1 0 0 0 0 0 0 0 0 0 0
GTT 1 0 1 0 0 0 0 0 0 0 0 0 0
GGT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCA 3 1 2 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 5 4 1 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 7 3 3 0 0 0 0 1 0 0 0 0 0
CTG 8 6 2 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CGG 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 2 1 1 0 0 0 0 0 0 0 0 0 0
CCT 3 3 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 1 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
4 AAC + 3 ACA + 5 CAA + 1 GTT + 5 TTG + 3 TGT = 21
2 ATG + 0 TGA + 1 GAT + 1 CAT + 0 ATC + 2 TCA = 6
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 0 GAG + 3 CCT + 1 CTC + 0 TCC = 5
2 AGC + 3 GCA + 7 CAG + 2 GCT + 8 CTG + 10 TGC = 32
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 1 TCG = 1
1 ACC + 2 CCA + 0 CAC + 2 GGT + 0 GTG + 1 TGG = 6
0 GGC + 0 GCG + 1 CGG + 0 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7291054|gb|AE003447.1|AE003447 Drosophila melanogaster genomic scaffold 142000013386054 section 31 of 35, complete sequence
Position Repeat Coverage Repeat
1168 AAC * 14 39/42 AAC AAC AGC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AGG
4723 CAT * 18 49/54 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CGT CAT TCT CCG
13167 TTA * 10 27/30 TTA TTA TTG GTA TTA TTA TTA TTA TTA TTT
19349 TTG * 7 19/21 TTG CTG CTG TTG TTG TTG TTG
24538 TCC * 7 19/21 TCC TTC TCC TCC TCC TCC TGC
24702 CTG * 7 19/21 CTG CTG CTG ATG TTG CTG CTG
24730 TGC * 7 19/21 TGC TGC TGC TTC TGA TGC TGC
24808 TGC * 7 20/21 TGC TGC TGC TGC TGA TGC TGC
65775 ATG * 8 24/24 ATG ATG ATG ATG ATG ATG ATG ATG
70537 TTG * 9 25/27 TTG CTT TTG TTG TTG TTG TTG TTG TTG
76557 CTG * 12 33/36 CTG CTG CTG CTG CTG CTA CTG CTG CTG CTG CCT CTG
77079 GCA * 7 19/21 GCA GCA GCA ACA GCA GCA ACA
77133 CAG * 8 22/24 CAG CAA CAT CAG CAG CAG CAG CAG
93892 GCA * 10 28/30 GCA GCA GCA GCA GCA ACA GCA ACA GCA GCA
133250 GCA * 7 19/21 GCA GCA ACA GCA GCA GCA ACA
133812 ATG * 7 19/21 ATG ATG ATG ATG GTG AGG ATG
133926 CAG * 12 33/36 CAG CAG CAG CAG AAG CAG CAG CAG CAG CAA CAT CAG
134329 CAG * 8 22/24 CAG CAG CAG CAG CAA CTG CAG CAG
150286 AGC * 7 19/21 AGC AGC AGC AGA AGG AGC AGC
150402 AGC * 10 27/30 AGC AGC AGC AAC AAC AGC AGC AGC AGC AAC
150563 CAG * 7 19/21 CAG CAG CAA CTG CAG CAG CAG
151481 CAA * 7 19/21 CAA CAA CAA CAA CAG CAA CAG
152297 GCA * 7 19/21 GCA GCA GCA GTT GCA GCA GCA
154730 TTA * 7 19/21 TTA TTA TTA TTA TTA TTT TTT
191287 AGA * 10 27/30 AGA AGA AGA AGA AGA AGA AGA ACA ACA ACA
205720 CAT * 7 19/21 CAT CAT CGT CAT CAA CAT CAT
205744 CAT * 11 30/33 CAT CAT CAT TAT CAT CAT CAT CAT CAT CAT CCC
216707 TTG * 8 23/24 TTG TGG TTG TTG TTG TTG TTG TTG
269816 CTA * 10 28/30 CTA CTA CTA CTA CTA CTA CAA CTA CTG CTA
274392 GAG * 10 27/30 GAG GAG GAG GAG GAG GAA GAG GAG GAC GAT
275078 GAG * 7 19/21 GAG GAG GTG GAT GAG GAG GAG
275177 CAG * 7 19/21 CAG CAG CAG CAG CAT CAC CAG
296423 CTG * 7 19/21 CTG CTG CTA CTG CTA CTG CTG
-----------------------------------------------------------------------------------------
Total sequence length......................... 304060
Total number of repeats detected.............. 33
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 0 0 1 0 0 0 0 0 0 0 0 0
ATG 2 2 0 0 0 0 0 0 0 0 0 0 0
AGA 1 0 1 0 0 0 0 0 0 0 0 0 0
AGC 2 1 1 0 0 0 0 0 0 0 0 0 0
TTA 2 1 1 0 0 0 0 0 0 0 0 0 0
TTG 3 3 0 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 2 1 1 0 0 0 0 0 0 0 0 0 0
GCA 4 3 1 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 3 1 1 0 1 0 0 0 0 0 0 0 0
CAG 5 4 1 0 0 0 0 0 0 0 0 0 0
CTA 1 0 1 0 0 0 0 0 0 0 0 0 0
CTG 3 2 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 2 TTA + 0 TAT = 2
0 AAG + 1 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 1
1 AAC + 0 ACA + 1 CAA + 0 GTT + 3 TTG + 0 TGT = 5
2 ATG + 0 TGA + 0 GAT + 3 CAT + 0 ATC + 0 TCA = 5
0 AGT + 0 GTA + 0 TAG + 0 ACT + 1 CTA + 0 TAC = 1
0 AGG + 0 GGA + 2 GAG + 0 CCT + 0 CTC + 1 TCC = 3
2 AGC + 4 GCA + 5 CAG + 0 GCT + 3 CTG + 2 TGC = 16
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7290992|gb|AE003446.1|AE003446 Drosophila melanogaster genomic scaffold 142000013386054 section 30 of 35, complete sequence
Position Repeat Coverage Repeat
21394 CAT * 8 22/24 CAT CAT CAT CAT CAT AAT CAT CAC
21540 GCA * 7 19/21 GCA GCA GCA GCA ACA GCA GCC
24247 TGC * 7 19/21 TGC TGT TGC TGC TGT TGC TGC
24322 TGC * 7 19/21 TGC TGT TGC TGT TGC TGC TGC
24367 TGC * 7 19/21 TGC TGT TGC TGC TGC TGC TCC
24443 TGC * 10 27/30 TGC TGT TGC TGT TGC TGC TGC TGC TGC TCC
25690 TGT * 7 19/21 TGT TGT TGT TGA TGT TGA TGT
25717 TGC * 7 19/21 TGC TGT TGA TGC TGC TGC TGC
25758 CTG * 15 41/45 CTG TTG CTG CTG CTG CTG CTG CTG CTG CTG TTG CTG CTG TTG TTG
25813 TGC * 9 25/27 TGC TGC TGA TGC TGC TGC TGC TGC TGG
26087 CTG * 8 22/24 CTG CTG CTG CTG CTG ATG TTG CTG
32961 TTA * 7 19/21 TTA TTT TTT TTA TTA TTA TTA
56464 GAA * 8 22/24 GAA GAA GAT GAA GAA GAT GAA GAA
63039 TGC * 8 22/24 TGC TGA TGT TGC TGC TGC TGC TGC
66808 GTT * 8 23/24 GTT GTT GTT GTT GTT GTT GGT GTT
78223 ATA * 7 19/21 ATA ATA ATA ATA ACA AAA ATA
84806 TAT * 10 28/30 TAT TAT TAT TAT TAT TAT TAT TAC GAT TAT
90584 GAG * 8 22/24 GAG GAT GAG GAG GAA GAG GAG GAG
97822 CAC * 7 19/21 CAC CAC CAC CGC CTC CAC CAC
99987 ACA * 10 27/30 ACA ACA ACA ACA ACA ACA ACA GCA ATA ATA
101716 TGT * 7 19/21 TGT TGT TGT TGT TGT TGC TGC
102798 TGT * 7 19/21 TGT TCT TGT TGT TGT TGT TGG
114414 GTG * 7 20/21 GTG CTG GTG GTG GTG GTG GTG
114760 GCA * 11 32/33 GCA ACA GCA GCA GCA GCA GCA GCA GCA GCA GCA
115046 CAG * 10 28/30 CAG CAG CAG CAG CAG CAG CAG CAG CCG CAC
133675 AGC * 13 36/39 AGC AGC AGA AGT AGC AGC AGC AGC AGC AGC AGC AGC AGG
135772 GCA * 9 25/27 GCA ACA GCA ACA GCA GCA GCA GCA GCA
135857 CAG * 9 25/27 CAG CAG CAG CAG CAG CAG AAA CAG CAG
135886 GCA * 7 19/21 GCA GCA TCA ACA GCA GCA GCA
136154 CAG * 11 31/33 CAG CAG CAG CAG CAG CAA CAG CAG CAG CAA CAG
136240 GCA * 7 19/21 GCA GCA GCA GCA ACA GCA ACA
141478 ATT * 8 23/24 ATT ATT ATT ATT ATT ATT ATT GTT
143632 TAT * 11 30/33 TAT TAT TAT GAT TAT TAT TAT AAT TAT GAT TAT
153557 CAA * 10 28/30 CAA CAA CAA CAA CAA CAA CAA CAA TTA CAA
168375 TAT * 7 19/21 TAT TAT TAT TAT TAT TAT ATT
176034 TTA * 7 19/21 TTA TTT TTA TTA TTA TTA TTT
182785 GCT * 7 19/21 GCT GCT GCT GTT GCT GCT GGT
183651 AGC * 10 27/30 AGC AGC AGC AGC CGC AGC AGC AGC AGG ATC
190972 GCG * 7 19/21 GCG TCG GCG GCG GCG GCT GCG
193707 ATC * 9 25/27 ATC ATC ATC ATC ATC ATC ATC ATC AGA
214340 TGC * 10 27/30 TGC TGC TAC TGC TAC TGC TGC TGC TGC TGT
217569 TAT * 7 20/21 TAT TAT TAT TAT TAT TAT TAA
227768 GCA * 10 27/30 GCA GCA GGA GCA GTA GCA GCA GCA GCA GGA
230374 CAG * 7 19/21 CAG CAG GAG CAG TAG CAG CAG
236265 CTG * 7 19/21 CTG CTG TTG TTG CTG CTG CTG
238489 CTG * 7 19/21 CTG CTG TTG TTG CTG CTG CTG
238536 GCT * 7 19/21 GCT GCT GCT GTT GTT GCT GCT
238574 TGT * 7 19/21 TGT TGT TGC TGT TGC TGT TGT
253904 CCA * 8 23/24 CCA CCA CCA CCA CCA CCA CCA CCC
261745 GCA * 7 19/21 GCA GCA GCA GCA GCA GCA CCC
266261 TGC * 8 23/24 TGC TGC TGC TGC TGC TGC TGC TGT
269686 GCC * 7 19/21 GCC ACC GCC GCC GCC GCC ACC
270296 CAG * 10 27/30 CAG CAG CAG CAA CAG CAG CAG CAG CAA CAA
275555 TGT * 7 19/21 TGT TGG TGG TGT TGT TGT TGT
275840 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC TGC CAC
276255 GTT * 10 28/30 GTT ATT GTT CTT GTT GTT GTT GTT GTT GTT
284397 TTA * 7 21/21 TTA TTA TTA TTA TTA TTA TTA
294684 TGA * 8 22/24 TGA TGA TGA TGA TGG TGC TGA TGA
295448 CTG * 10 28/30 CTG TTG TTG CTG CTG CTG CTG CTG CTG CTG
295637 CTG * 8 23/24 CTG CTG CTG TTG CTG CTG CTG CTG
295913 CTG * 10 28/30 CTG TTG CTG CTG CTG CTG CTG CTG CTG CAG
296013 TGC * 7 19/21 TGC TGC TGT TGC TGG TGC TGC
296159 CTG * 8 22/24 CTG CTG TTG CTG TTG CTG CTG CTG
299989 AAC * 8 23/24 AAC AAC AAC AAC AAC AAC AAC AGC
300223 CCG * 8 22/24 CCG CCG CCG CCG CTG CTG CCG CCG
-----------------------------------------------------------------------------------------
Total sequence length......................... 303104
Total number of repeats detected.............. 65
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 0 1 1 0 0 0 0 0 0 0 0 0
ACA 1 0 1 0 0 0 0 0 0 0 0 0 0
TAT 4 2 2 0 0 0 0 0 0 0 0 0 0
TTA 3 3 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 5 5 0 0 0 0 0 0 0 0 0 0 0
TGC 11 9 2 0 0 0 0 0 0 0 0 0 0
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 2 1 1 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 7 5 2 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 0 1 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 5 2 3 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 8 5 2 1 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 1 ATT + 3 TTA + 4 TAT = 9
0 AAG + 0 AGA + 1 GAA + 0 CTT + 0 TTC + 0 TCT = 1
1 AAC + 1 ACA + 1 CAA + 2 GTT + 0 TTG + 5 TGT = 10
0 ATG + 1 TGA + 0 GAT + 1 CAT + 1 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 1
2 AGC + 7 GCA + 5 CAG + 2 GCT + 8 CTG + 11 TGC = 35
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 1 CCA + 1 CAC + 0 GGT + 1 GTG + 0 TGG = 3
0 GGC + 1 GCG + 0 CGG + 1 GCC + 1 CCG + 0 CGC = 3
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7290970|gb|AE003445.1|AE003445 Drosophila melanogaster genomic scaffold 142000013386054 section 29 of 35, complete sequence
Position Repeat Coverage Repeat
24223 GCT * 11 31/33 GCT GCT GCT GCT GCT GCT GAT GCT GCT GCT GCC
40736 TAA * 8 22/24 TAA TAA TAA TAA TAA TAA TAA AAG
41072 CTG * 8 22/24 CTG CTG TTG CTG CTG CTG CTG TTG
41097 TGC * 8 23/24 TGC TGC TGC TGC TGC TGC TGT TGC
41174 CGG * 8 23/24 CGG CGG CGG CGG CGG TGG CGG CGG
54682 AGC * 12 33/36 AGC AGC CGC AGC AGC AGC AGC AGC AGC AGC AGC CAC
59253 TTA * 7 20/21 TTA ATA TTA TTA TTA TTA TTA
75899 CAG * 10 28/30 CAG CAG CAG CAG CAG CAG CAG CAG CAA CCG
85394 TGC * 7 20/21 TGC TGC TGC TGC TGC TGT TGC
94296 TTG * 10 27/30 TTG TTG TTG TTG TTG TTG TAG CTG TTG TTA
102257 TGC * 8 23/24 TGC TGC TGC TGC TGC TGC TGC TGT
102473 AGC * 8 22/24 AGC AAC AAC AGC AGC AGC AGC AGC
102508 CAG * 8 22/24 CAG CAG CAG CAG CAA CAA CAG CAG
103245 GTC * 11 31/33 GTC GTC GTC GTC GTC GTC GTC GTC GTC GTC GGT
106899 ATA * 7 19/21 ATA ATA ATA ATA ATA AAA AAA
107331 AAT * 8 22/24 AAT AAT AAT AAT AAT AAT AAT TTT
111598 CAT * 7 19/21 CAT CAT CGT CAT CGT CAT CAT
111658 AAC * 10 27/30 AAC AAC AAG TAC AAC AAC AAC AAC AAC AGC
112432 GTC * 7 19/21 GTC GTC GTC GTT GTC GTT GTC
133418 TTG * 10 27/30 TTG TTG TTG TTG TTG TTC TTG CTG TTG CTG
139130 ATC * 8 22/24 ATC ATC ATC ATC ATC ACC ATC ACC
141313 ATT * 7 19/21 ATT ATA ATT ATT ATT ATT GTT
145872 CAA * 8 22/24 CAA CAA CAA CAA GAA CAA CAA CAC
151323 ATG * 7 19/21 ATG ATG ATG ATG ATG ATA GTG
154244 GTG * 12 33/36 GTG GTG GTG GTG GTG GTG GTG GTG GTG GCA GCG GTG
155789 ATA * 8 22/24 ATA ATA ATA AAA ATA ATA ATT ATA
155855 TGT * 10 28/30 TGT TCT TGT TGT TGT TGA TGT TGT TGT TGT
156333 TCA * 8 22/24 TCA TCA TCA TCT TCA TCA TTA TCA
172356 CCT * 8 23/24 CCT CCT CCT TCT CCT CCT CCT CCT
174250 ACA * 7 19/21 ACA ACG ACA ACA ACA ACA GCA
185240 GAT * 11 30/33 GAT GAT GAT GAT GAT GAT GAT GAT GAC GAG GAC
187265 TCT * 7 19/21 TCT TCT TCT TCT TCC TCA TCT
187361 TTG * 7 20/21 TTG TTG TTG TTG TTG TAG TTG
201644 GTT * 7 19/21 GTT GTT GTT GCT GTT GCT GTT
213431 CGG * 7 20/21 CGG CGG CGG CGG CGG TGG CGG
217787 GAT * 7 19/21 GAT GAT GAT GCT GCT GAT GAT
222017 TTG * 7 19/21 TTG TTG TTG TTG TTG TTG ATA
241498 ATG * 9 25/27 ATG ATG ATG ATG ATG ATG ATG ATG CTT
251729 CAT * 14 39/42 CAT CAT CAT CAT CGT CAT CAT CAT CAT CAT CAT CAT CAT TGT
252654 ATG * 8 24/24 ATG ATG ATG ATG ATG ATG ATG ATG
282323 ACA * 11 30/33 ACA ACA ACA GCA GCA ACA ACA ACA ACA ACA ACC
289098 TGC * 7 19/21 TGC TGC TGC TGC TGC TGA CGC
291545 ATA * 7 20/21 ATA ATA ATA ATA ATA ATA AAA
292689 TCC * 15 41/45 TCC TCC TCC TCC GCC TCC TCC TAC TCC TCC TCC TCC TCC ACC ACC
296151 ACA * 8 22/24 ACA GCA ACA ACA ACA ACA ACA GCA
296193 GCA * 7 19/21 GCA GCA GCA GCA GCA ACA ACA
296238 GCA * 7 19/21 GCA GCA GCA GCA ACA TCA GCA
296556 GCA * 13 36/39 GCA GCA GCA GCA ACA ACA GCA GCA GCA GCA GCA GCA ACA
296716 CAG * 11 30/33 CAG CAG TTG CAG CAG CAG CAG CAG CAG CAG CAA
297244 TAT * 7 20/21 TAT TAT TAC TAT TAT TAT TAT
301869 GGT * 7 19/21 GGT GGT GGT GCT GGT GGC GGT
308667 TAC * 7 20/21 TAC TAC TAC TAC TAC TAC TAT
-----------------------------------------------------------------------------------------
Total sequence length......................... 313965
Total number of repeats detected.............. 52
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 1 0 1 0 0 0 0 0 0 0 0 0 0
ATA 3 3 0 0 0 0 0 0 0 0 0 0 0
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 3 3 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 1 1 0 0 0 0 0 0 0 0 0 0
ACA 3 2 1 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TAC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 4 2 2 0 0 0 0 0 0 0 0 0 0
TGT 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 4 4 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
TCT 1 1 0 0 0 0 0 0 0 0 0 0 0
TCC 1 0 0 1 0 0 0 0 0 0 0 0 0
GAT 2 1 1 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 0 1 0 0 0 0 0 0 0 0 0 0
GTC 2 1 1 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 3 2 0 1 0 0 0 0 0 0 0 0 0
GCT 1 0 1 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 2 1 0 1 0 0 0 0 0 0 0 0 0
CAG 3 1 2 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CGG 2 2 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 3 ATA + 1 TAA + 1 ATT + 1 TTA + 1 TAT = 8
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 1 TCT = 1
1 AAC + 3 ACA + 1 CAA + 1 GTT + 4 TTG + 1 TGT = 11
3 ATG + 0 TGA + 2 GAT + 2 CAT + 1 ATC + 1 TCA = 9
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 1 TAC = 1
0 AGG + 0 GGA + 0 GAG + 1 CCT + 0 CTC + 1 TCC = 2
2 AGC + 3 GCA + 3 CAG + 1 GCT + 1 CTG + 4 TGC = 14
0 ACG + 0 CGA + 0 GAC + 0 CGT + 2 GTC + 0 TCG = 2
0 ACC + 0 CCA + 0 CAC + 1 GGT + 1 GTG + 0 TGG = 2
0 GGC + 0 GCG + 2 CGG + 0 GCC + 0 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7290927|gb|AE003444.1|AE003444 Drosophila melanogaster genomic scaffold 142000013386054 section 28 of 35, complete sequence
Position Repeat Coverage Repeat
13588 GCA * 8 22/24 GCA GCA GCA GCA GCA ACA GCT GCA
16225 CAA * 7 19/21 CAA CAA CAA CAA CAG CAA CCA
33430 CTG * 8 22/24 CTG TTG CTG TTG CTG CTG CTG CTG
33521 TGC * 9 25/27 TGC TGC TGC TGT TGC TGT TGC TGC TGC
33551 TGC * 13 37/39 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGT TGC TGC TTC
36583 GAC * 8 23/24 GAC GAC GAT GAC GAC GAC GAC GAC
36632 TGC * 7 19/21 TGC TGC TGG TGC TGC TGT TGC
39479 CTG * 10 29/30 CTG CTG CGG CTG CTG CTG CTG CTG CTG CTG
39662 CCT * 17 46/51 CCT CCT CCT CCT CCA TCT CCT CCT CCT CCT CCT TCT CCT TCT CCT CCT TCT
94725 AAT * 11 30/33 AAT AAT AAT ACA AAT AAT AAT AAT AAT AAT AAC
96668 GCG * 17 46/51 GCG GCG GCG GCG GCG GCG GCG GCG GCG GCG GCG GCG GCG GCG GAA TAG GAG
96727 GGC * 8 23/24 GGC GGC GGC GGC GGC GGC GGA GGC
101117 ATA * 10 27/30 ATA ACA ATA ATA ATA ATA ATA ATA ATA AAT
110918 CTC * 7 19/21 CTC CTC CTC CTC CTC CTC CGA
112477 GTG * 8 22/24 GTG GTG GTG GTG GTG GTG GTG GAT
113662 TGA * 13 36/39 TGA TGA TGA TGA TGA TGA TGA TGA TGT TGA TGA TGA GGG
132427 TCA * 8 22/24 TCA TCA TCA TCC TCT TCA TCA TCA
133296 CAA * 14 38/42 CAA CAA CAA CAA CAG CAA CAA CAA CAA CAG CAG CAA CAA CAG
134651 ACA * 7 19/21 ACA ACA GCA AAA ACA ACA ACA
138626 AAC * 10 28/30 AAC CAC AAC AAC AAG AAC AAC AAC AAC AAC
139650 CTC * 10 28/30 CTC CTC CTC CCC CTC CTT CTC CTC CTC CTC
147721 AGC * 9 25/27 AGC ACG AGC AGC AGC AGC AGC AGC AGC
147757 AAC * 11 30/33 AAC AAC AAC AAC AAC AAC AAC AAT AAC ATC ATC
150967 GCA * 11 30/33 GCA GCA ACA GCA GCA GCA GCA GCG GCA GCA ACA
188255 TCC * 7 19/21 TCC TGC TCC TCC TCT TCC TCC
190165 GGA * 7 19/21 GGA CGA TGA GGA GGA GGA GGA
192588 GGA * 9 25/27 GGA GGA GGA GGA GGA GCA GGA GGA GCA
206929 TAA * 7 19/21 TAA TCA GAA TAA TAA TAA TAA
209726 GCA * 7 20/21 GCA GCA GCA GCA GCA GCA GGA
215332 TGG * 8 22/24 TGG TGG TGG TGG TGT TGG TGG TGC
217179 CGC * 8 22/24 CGC CAC CGC CGC CGC CGC CGC CAC
217373 CCG * 7 19/21 CCG CCG CCG CCG CCG CTG CTG
217798 CTG * 7 19/21 CTG CTG CTG CTG CTG CAA CTG
229637 TAG * 7 19/21 TAG TAT TAG TAG TAG TAG TAA
235314 TGC * 8 22/24 TGC TAC TGC TGC TGC TAC TGC TGC
239319 ATG * 7 20/21 ATG ATG ATG ATG ATG ATG ATA
245851 CTG * 8 22/24 CTG CTG CTG CTG CTG CTG CTG CCT
260300 AAG * 7 19/21 AAG AAG AAG AAG AAG AAG AGT
260930 GCA * 8 22/24 GCA GCA GCA GCA GCA GCA ACA ACA
275797 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC TGG AGC
281973 CAG * 8 22/24 CAG CAG CAG CAG CAG CAA CAG CGG
287694 GAT * 9 25/27 GAT GAT GAT GAT GTT GGT GAT GAT GAT
287886 GAA * 11 30/33 GAA GAA GAA GAA GAA GAA GAA GAA GGC GAA CAA
289496 CAA * 7 19/21 CAA CAA AAA CAA CAA GAA CAA
297355 GGA * 7 19/21 GGA GGA GGA GGA GGA GGA ATA
-----------------------------------------------------------------------------------------
Total sequence length......................... 300710
Total number of repeats detected.............. 45
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 0 1 0 0 0 0 0 0 0 0 0 0
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 2 0 2 0 0 0 0 0 0 0 0 0 0
ATA 1 0 1 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 0 0 1 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 5 4 0 1 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAA 1 0 1 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 3 3 0 0 0 0 0 0 0 0 0 0 0
GGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 4 3 1 0 0 0 0 0 0 0 0 0 0
GCG 1 0 0 0 1 0 0 0 0 0 0 0 0
CAA 3 2 0 1 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 4 3 1 0 0 0 0 0 0 0 0 0 0
CTC 2 1 1 0 0 0 0 0 0 0 0 0 0
CGC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 0 0 0 1 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 1 ATA + 1 TAA + 0 ATT + 0 TTA + 0 TAT = 3
1 AAG + 0 AGA + 1 GAA + 0 CTT + 0 TTC + 0 TCT = 2
2 AAC + 1 ACA + 3 CAA + 0 GTT + 0 TTG + 0 TGT = 6
1 ATG + 1 TGA + 1 GAT + 0 CAT + 0 ATC + 1 TCA = 4
0 AGT + 0 GTA + 1 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 3 GGA + 0 GAG + 1 CCT + 2 CTC + 1 TCC = 7
1 AGC + 4 GCA + 1 CAG + 0 GCT + 4 CTG + 5 TGC = 15
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 1 GTG + 1 TGG = 2
1 GGC + 1 GCG + 0 CGG + 0 GCC + 1 CCG + 1 CGC = 4
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7290880|gb|AE003443.1|AE003443 Drosophila melanogaster genomic scaffold 142000013386054 section 27 of 35, complete sequence
Position Repeat Coverage Repeat
15905 TGG * 14 38/42 TGG TTG TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TCG TAT
21061 GAG * 7 20/21 GAG GAG GAG GAG GAG GTG GAG
28525 GAC * 8 22/24 GAC GAT GAC GAC GAC GAC GAC GAG
30325 GGT * 8 22/24 GGT GGT GGT GGT GGT GCT GGT GGC
57562 TGC * 8 22/24 TGC TGC TGC TGT TGC TGT TGC TGC
61360 TGT * 10 28/30 TGT TGT TGT TGT TGT TGT TGT TGT TGG TGG
61575 TGC * 7 19/21 TGC TGG TTC TGC TGC TGC TGC
64534 CTG * 12 33/36 CTG CTG CTG CTG CTG CTG CTG TTG CAG CTG CTG CTC
64983 AAC * 7 19/21 AAC AAC AAT CAC AAC AAC AAC
66066 GCT * 8 24/24 GCT GCT GCT GCT GCT GCT GCT GCT
67001 CAG * 7 19/21 CAG CAT CAC CAG CAG CAG CAG
67024 GCA * 7 19/21 GCA GCG GCA GCG GCA GCA GCA
74057 TTC * 14 38/42 TTC TTC TTC TTC TTC TTC GTC GTC TTC TTC TTC TCC TTC ATC
74428 CAA * 8 22/24 CAA CAG CAA CAA CAA CAA CAA TAA
77387 TTA * 8 22/24 TTA CTA TTA TTA TTA TTA TTA TTT
80491 GCA * 8 22/24 GCA GCA GCA GCG GCA GCA GCA GAA
81663 TTG * 8 22/24 TTG TTG TTG TTG TTG TTT TTT TTG
91947 GTT * 7 19/21 GTT GTT GTT GTT GTT GTT TTC
96630 CAG * 10 28/30 CAG CAG CAG CAG CAA CAG CAG CAG CAG CCG
97588 CAG * 11 30/33 CAG CAA CAG CAA CAG CAG CAG CAG CAG CAT CAG
97669 CAG * 7 20/21 CAG CAG CAG CAG CAG CAA CAG
99230 TGA * 11 30/33 TGA TGA CCA TGA TGA TGA TGA TGA TGA TGA TGG
103474 AGC * 7 20/21 AGC AGC AGC AGC AGC AGC AAC
108866 GCT * 7 19/21 GCT GTT GCT GCT GCT GCT TCT
110837 GCA * 8 22/24 GCA GCA GCA GCT GCA GCA GCA ACA
111822 CAC * 8 23/24 CAC CAC CAC CAA CAC CAC CAC CAC
111888 CAC * 8 23/24 CAC CAA CAC CAC CAC CAC CAC CAC
111986 AAC * 7 19/21 AAC AAC TAC AAC AAC AAC ACC
112010 CAA * 9 25/27 CAA AAA CAT CAA CAA CAA CAA CAA CAA
112304 GCA * 12 33/36 GCA TCA GCA GCA GCA GCA GCA GCA ACA ACA GCA GCA
112645 AGC * 7 19/21 AGC AGC AGC AAC AGC AAC AGC
113062 GCA * 12 33/36 GCA ACA GCA GCA GCA GCA GCA TCA GCA TCA GCA GCA
119246 GCA * 13 36/39 GCA GCA GCA GCA GCA GCA GCA GCA GAA AAA GCA GCA GCA
119406 TGC * 10 27/30 TGC TGC TGC TGC TGC TGC TGC TGC AGC ATC
119693 GCA * 10 27/30 GCA ACT GCA GCA GCA GCA GCA GCA GCA GAA
127481 AAT * 7 19/21 AAT AAC AAT ATT AAT AAT AAT
132080 ATG * 7 20/21 ATG ATG ATG ATG ATG ATG ATT
144705 ACA * 7 19/21 ACA ACA ACA GCA GCA ACA ACA
147913 TTG * 7 20/21 TTG TTG TTG CTG TTG TTG TTG
172376 TGC * 12 33/36 TGC TGC TGC TGC TGC TGC TGT TGC TGC TGG TGA TGC
185725 AGG * 7 19/21 AGG AGC AGG AGC AGG AGG AGG
195256 CAG * 7 19/21 CAG CAT CAG CAT CAG CAG CAG
223778 CCG * 7 20/21 CCG CCG CCG CCA CCG CCG CCG
243234 AAC * 11 31/33 AAC AAC AAC AAC AAC AAC AAC AAC AGC AAC AAA
243363 ATG * 7 19/21 ATG ATT ATG ATG CTG ATG ATG
249317 GAA * 8 22/24 GAA GAA GAA CAA GAA GAA GAA GGA
263616 TCA * 10 29/30 TCA TCA TCA TCA TCA TCA TCA TCA GCA TCA
280569 GAT * 8 22/24 GAT GAT GAT GAT GAT GAT GAT GGC
286352 GCA * 9 25/27 GCA GCA GCA GCC GCA ACA GCA GCA GCA
286382 GCA * 7 20/21 GCA GCA GCA GCA GCA GCA GCC
286617 GGC * 7 19/21 GGC GGC GGC GGT GGC GGC GGT
287318 CAG * 7 19/21 CAG CAA CAG CAG CAG CAG CAA
287342 CAG * 11 30/33 CAG CAG CAG CAG CAG CAG CAG CAG CAA CAA CAA
287384 GCA * 11 30/33 GCA GCA GCA GCG GCG GCA GCA GCA GCA GCG GCA
287470 GCA * 8 23/24 GCA GCA ACA GCA GCA GCA GCA GCA
289076 CAG * 8 22/24 CAG CAA CAA CAG CAG CAG CAG CAG
291792 TCC * 8 22/24 TCC TGC TCC TCC TCC TCC TCC TCG
296300 AAC * 7 19/21 AAC AAC AAC AAC AAC TAC TAC
296719 AAC * 7 19/21 AAC AAC AGC AGC AAC AAC AAC
-----------------------------------------------------------------------------------------
Total sequence length......................... 302357
Total number of repeats detected.............. 59
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 5 4 1 0 0 0 0 0 0 0 0 0 0
ATG 2 2 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 2 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TTC 1 0 0 1 0 0 0 0 0 0 0 0 0
TGA 1 0 1 0 0 0 0 0 0 0 0 0 0
TGT 1 0 1 0 0 0 0 0 0 0 0 0 0
TGG 1 0 0 1 0 0 0 0 0 0 0 0 0
TGC 4 2 2 0 0 0 0 0 0 0 0 0 0
TCA 1 0 1 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 11 6 4 1 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 8 5 3 0 0 0 0 0 0 0 0 0 0
CAC 2 2 0 0 0 0 0 0 0 0 0 0 0
CTG 1 0 1 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 2
0 AAG + 0 AGA + 1 GAA + 0 CTT + 1 TTC + 0 TCT = 2
5 AAC + 1 ACA + 2 CAA + 1 GTT + 2 TTG + 1 TGT = 12
2 ATG + 1 TGA + 1 GAT + 0 CAT + 0 ATC + 1 TCA = 5
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 1 TCC = 3
2 AGC + 11 GCA + 8 CAG + 2 GCT + 1 CTG + 4 TGC = 28
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 2 CAC + 1 GGT + 0 GTG + 1 TGG = 4
1 GGC + 0 GCG + 0 CGG + 0 GCC + 1 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7290831|gb|AE003442.1|AE003442 Drosophila melanogaster genomic scaffold 142000013386054 section 26 of 35, complete sequence
Position Repeat Coverage Repeat
1580 ATC * 7 20/21 ATC ATC ATC ATG ATC ATC ATC
9970 ATG * 9 25/27 ATG ATG ATG ATG ATG GTG ATG AGG ATG
11391 TGT * 11 30/33 TGT TGT TGT TGT TGT TGT TGT TGT TGT TGG TCG
21362 CAA * 7 19/21 CAA TAA CAA TAA CAA CAA CAA
21989 TGC * 12 34/36 TGC TGC TGC TGT TGC TGC TGC TGC TGT TGC TGC TGC
33562 GCA * 8 22/24 GCA GCA GCA GCA GCA GCA ACA ACA
36286 ATT * 11 30/33 ATT ATT ATT ATT GCT ATT ATT ATT ATT ATT ATG
48242 CAG * 11 31/33 CAG CAG CAG CAG CAG CAG GAG CAG CAA CAG CAG
48489 ATT * 8 22/24 ATT ATT TTT TTT ATT ATT ATT ATT
63236 ATC * 7 19/21 ATC ATC AAC ATC ATC GTC ATC
107044 ACA * 8 22/24 ACA GCA ACA ACA ATA ACA ACA ACA
120143 TAT * 7 19/21 TAT TAT TAT TAT CAT TAT TTT
121777 TGT * 8 22/24 TGT TCT TGT TGT TTT TGT TGT TGT
155055 AAC * 10 27/30 AAC AAC AAC AAC AAC AAC AGC GAC AAC AAT
158312 TGC * 7 19/21 TGC TGC TGC TGC TGC TGA TGG
176747 GAC * 8 23/24 GAC TAC GAC GAC GAC GAC GAC GAC
194325 AGC * 17 46/51 AGC AGG AGC AGC AGC AGC AGC AGC AGC AGC AGC AGC AGC AGC AGG CGA AAC
203856 TGT * 7 19/21 TGT TGT TGC TGT TGC TGT TGT
210003 TCA * 7 21/21 TCA TCA TCA TCA TCA TCA TCA
213613 TTG * 8 22/24 TTG CTA TTG TTG TTG TTG TTG TTG
233043 TTA * 7 19/21 TTA ATA TTA TTA TTA TTA ATA
236502 CCG * 8 22/24 CCG CCG CCA CCG CCG CCG CCG CCA
237423 TGC * 8 22/24 TGC TGC TGC TGC AGC TGC TGC TGG
237453 TGC * 7 19/21 TGC TGC TGC TGC TGC TGT TGG
237512 CTG * 7 19/21 CTG CTG TTG CTG CTG CTG ATG
237554 CTG * 7 19/21 CTG CTG CAT CTG CTG CTG CTG
237813 TGC * 12 33/36 TGC TGC TGC TGT TGT TGC TGC TGC TGC TGC TGC TGT
237873 TGC * 10 28/30 TGC TGT TGC TGC TGC TGC TGC TGC TGC TGG
243190 ATA * 22 60/66 ATA ATC ATA ATA ATC ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATC ATA ATA TTG GTA ATA ATA
248102 TTG * 7 20/21 TTG TTG TTG TTG GTG TTG TTG
249142 GCC * 10 27/30 GCC GCC GCC GCC GCC GCC GCA GCC GCT GCT
265868 CAG * 11 30/33 CAG CAG CTG CAG CTG CAG CAG CAG CAG CAA CAG
266357 AGC * 7 19/21 AGC ACC AGC AGC ACC AGC AGC
279883 CAC * 11 31/33 CAC CAC CAC CAC CAC CAC CAC CGC CTC CAC CAC
281895 TGT * 8 23/24 TGT TGT TGT TGT TGT TGT TGT TTT
-----------------------------------------------------------------------------------------
Total sequence length......................... 306267
Total number of repeats detected.............. 35
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 0 1 0 0 0 0 0 0 0 0 0 0
ATA 1 0 0 0 0 0 1 0 0 0 0 0 0
ATT 2 1 1 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 2 2 0 0 0 0 0 0 0 0 0 0 0
AGC 2 1 0 0 1 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGT 4 3 1 0 0 0 0 0 0 0 0 0 0
TGC 6 3 3 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCC 1 0 1 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 0 2 0 0 0 0 0 0 0 0 0 0
CAC 1 0 1 0 0 0 0 0 0 0 0 0 0
CTG 2 2 0 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 2 ATT + 1 TTA + 1 TAT = 5
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 1 ACA + 1 CAA + 0 GTT + 2 TTG + 4 TGT = 9
1 ATG + 0 TGA + 0 GAT + 0 CAT + 2 ATC + 1 TCA = 4
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
2 AGC + 1 GCA + 2 CAG + 0 GCT + 2 CTG + 6 TGC = 13
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 1 GCC + 1 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7290819|gb|AE003441.1|AE003441 Drosophila melanogaster genomic scaffold 142000013386054 section 25 of 35, complete sequence
Position Repeat Coverage Repeat
3253 AGC * 7 19/21 AGC AGC AGC AGT AGC AAC AGC
3279 CAA * 7 19/21 CAA CAG CAA AAA CAA CAA CAA
51138 TGT * 8 22/24 TGT TGT TGT TGT TGT TAT TGT TGC
62805 AAT * 9 25/27 AAT AAT AAT AAT AAT ACT AAT AAT AAA
71220 GCA * 7 19/21 GCA GCA GCA ACA GCA ACA GCA
77411 TAT * 7 19/21 TAT TAT TAT TAT TGT TAT TGT
80481 GAT * 7 19/21 GAT GAT CAT GGT GAT GAT GAT
83817 TGT * 7 19/21 TGT TGC TGC TGT TGT TGT TGT
90275 GTT * 8 22/24 GTT GTT GTT GTC GTT GTT GTT TTT
95534 ATA * 8 22/24 ATA ACC ATA ATA ATA ATA ATA ATA
99062 GCA * 7 19/21 GCA TCG GCA GCA GCA GCA GCA
107515 CGT * 8 22/24 CGT AGT CGT CGT CGT CGT CGT CAT
107539 CAT * 13 36/39 CAT CAT CAT CAT CAC CAT CAT CAT TAT CAT CAT CAT CGT
109484 AAG * 7 19/21 AAG AAG AAG AAG AAG AAA AAA
111049 GAG * 7 19/21 GAG GAG GAG GAG GTG GTG GAG
111375 GTC * 8 22/24 GTC GTC GTC GTC GTC GTC ATC ATC
116063 TTG * 8 24/24 TTG TTG TTG TTG TTG TTG TTG TTG
119136 GTT * 7 19/21 GTT GCT GTT GTT GTA GTT GTT
119240 GCA * 8 22/24 GCA GCA ACA GCA GCA GCA GCA GCG
119919 TCA * 7 19/21 TCA GCA TCA TCA TCA TCA GCA
122914 AAC * 8 22/24 AAC ACC AAC AAC AGC AAC AAC AAC
123993 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CAA
124671 TCG * 11 30/33 TCG TCG TCG TCG TCG TCG TCG TCG TCT TCT TCA
130822 GCA * 7 19/21 GCA GCA GCA GCA GCA GCA CTA
131911 CAG * 10 28/30 CAG CAG CAG CGG CAG CAA CAG CAG CAG CAG
132302 GCA * 7 19/21 GCA ACA GCA GCA GCA ACA GCA
132405 GCA * 7 19/21 GCA GCA GCC GCA GCA GCA ACA
132525 GAG * 11 30/33 GAG GAG GAG GAC GAG GAG GAG GAT GAG GAC GAG
137530 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC TGT TGT
147634 TGT * 7 19/21 TGT TAT TGT TGT TGT TGT TAT
148399 GCC * 7 19/21 GCC GCC ACC GCC GCC GCC ACC
148442 CAA * 7 19/21 CAA CAG CAG CAA CAA CAA CAA
148477 ACA * 7 19/21 ACA GCA ACA GCA ACA ACA ACA
151404 AAC * 8 23/24 AAC AAC AAC AAG AAC AAC AAC AAC
158507 GCA * 7 19/21 GCA GCA GCA GGC GCA GCA GCA
160452 AGC * 7 19/21 AGC AGC AAC ACC AGC AGC AGC
162621 TAT * 11 30/33 TAT TTT TAT TAT TAT TAT TAT TAT TGT AAT TAT
164529 AAT * 7 19/21 AAT ATA AAT AAT AAT AAT AAT
172011 TGC * 8 22/24 TGC TGC TGC TGT TGC TGT TGC TGC
172836 TAT * 7 19/21 TAT TAT TGT TAT TAT TAT TGT
173835 CTC * 12 33/36 CTC CTC CTC CTC CTC CTC CTC CTC CAG ATC CTC CTC
173873 CCT * 7 19/21 CCT CCT CCT CCT CCT CCT AGT
174280 CTG * 7 19/21 CTG TTG CTG CTG CTG CTG CTA
174572 TGC * 7 19/21 TGC TAC TGC TGC TGC TGC TGG
174799 TGT * 31 84/93 TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGC TGC TGC TGC TGC TGC TGC TGC TGT TGC
188296 ACA * 22 60/66 ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA AGA AGA AGA AAA GAA
197588 ATG * 7 19/21 ATG ATG ATG ATG ATG ATG AGA
198913 GCA * 7 19/21 GCA GCT GCA GCA GCG GCA GCA
199657 TGC * 15 41/45 TGC TGC TGC TGC TGC TGC TGC TGC TGG TGT TGC TGC TGC TTC TCC
199815 CTG * 12 34/36 CTG CTG CTG CTG CTG CTG CTG TTG CTG CTG CAG CTG
200067 TGC * 14 38/42 TGC TGC TGC CGC CGC TGC TGC TGC TGC TGC TGC TGC TGT TGT
211264 ATC * 7 20/21 ATC ATC ATC ATC GTC ATC ATC
212053 ATC * 10 28/30 ATC ATC ATC ATC AAC ATC AAC ATC ATC ATC
215954 CAC * 8 22/24 CAC CAC CAC CAC CAC CAC CAT CAT
228661 AGA * 8 22/24 AGA TGA AGA AGA AGA AGA AGA GGA
229805 GCA * 8 22/24 GCA GGA GCA GCA GAA GCA GCA GCA
233263 TGT * 7 19/21 TGT TGT TGT GGT TGT TGT AGT
237684 ATG * 7 19/21 ATG ATG ATG CCG ATG ATG ATG
259236 CTG * 7 19/21 CTG CTG ATG CTG CCG CTG CTG
260234 AGC * 7 19/21 AGC AGG AGC AGG AGC AGC AGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 285272
Total number of repeats detected.............. 60
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 2 2 0 0 0 0 0 0 0 0 0 0 0
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 2 2 0 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 2 2 0 0 0 0 0 0 0 0 0 0 0
ATC 2 1 1 0 0 0 0 0 0 0 0 0 0
AGA 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 3 3 0 0 0 0 0 0 0 0 0 0 0
ACA 2 1 0 0 0 0 1 0 0 0 0 0 0
TAT 3 2 1 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 5 4 0 0 0 0 0 0 0 1 0 0 0
TGC 5 3 0 2 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
TCG 1 0 1 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 2 1 1 0 0 0 0 0 0 0 0 0 0
GTT 2 2 0 0 0 0 0 0 0 0 0 0 0
GTC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 9 9 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAT 1 0 0 1 0 0 0 0 0 0 0 0 0
CAG 2 1 1 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 3 2 1 0 0 0 0 0 0 0 0 0 0
CTC 1 0 1 0 0 0 0 0 0 0 0 0 0
CGT 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
2 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 3 TAT = 6
1 AAG + 1 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 2
2 AAC + 2 ACA + 2 CAA + 2 GTT + 1 TTG + 5 TGT = 14
2 ATG + 0 TGA + 1 GAT + 1 CAT + 2 ATC + 1 TCA = 7
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 2 GAG + 1 CCT + 1 CTC + 0 TCC = 4
3 AGC + 9 GCA + 2 CAG + 0 GCT + 3 CTG + 5 TGC = 22
0 ACG + 0 CGA + 0 GAC + 1 CGT + 1 GTC + 1 TCG = 3
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7290801|gb|AE003440.1|AE003440 Drosophila melanogaster genomic scaffold 142000013386054 section 24 of 35, complete sequence
Position Repeat Coverage Repeat
2217 CCA * 8 22/24 CCA TCA TCA CCA CCA CCA CCA CCA
10559 CAT * 8 23/24 CAT CAT CAT CAT CAT CAT CAT CAA
11003 GGT * 7 19/21 GGT GGA GGT GGT GGT GAT GGT
11245 CAC * 7 19/21 CAC CAC CAG CAC CAC CAG CAC
15417 TCG * 7 20/21 TCG TCG TCG TCG TCG TCA TCG
20236 CTT * 10 27/30 CTT CTT CTT CTT CTT CTT CTG CTT CTT GGT
33310 AAC * 7 20/21 AAC AAC AAC CAC AAC AAC AAC
43385 GCT * 10 28/30 GCT GCT GTT GAT GCT GCT GCT GCT GCT GCT
44607 TGC * 8 23/24 TGC TGC TGC TGC TGC TGT TGC TGC
45168 TGC * 9 25/27 TGC AGT TGC TGC TGC TGC TGC TGC TGC
48037 GAA * 7 20/21 GAA GAA GAA GAA GAA GAA GAG
51079 CTC * 9 25/27 CTC CTC CTC CTC CTC CAC CTC CTT CTC
60521 CCA * 8 22/24 CCA CCA CCA CCA CCA CCG CCG CCA
61210 GCA * 10 27/30 GCA GCA GCA GCA GCG GCG GCA GCA GCA GCG
66317 GCC * 7 19/21 GCC GCC GCC GCT GCC GCC GCT
66482 CAG * 8 23/24 CAG CAG CAG CAG CAA CAG CAG CAG
68536 GCA * 7 19/21 GCA GCA GCC GCA GCA GCA ACA
76729 TGC * 7 19/21 TGC TGC TCC TGC TGC CGC TGC
100898 AAT * 8 22/24 AAT AAT AAT AAT AAC AAT AAT AAC
119458 CAA * 10 27/30 CAA CAA CAG CAA CAA CAA CAA CAA CAC CGA
119533 CAA * 11 31/33 CAA CAG CAG CAA CAA CAA CAA CAA CAA CAA CAA
122412 GAA * 7 19/21 GAA GAA GAA GAA GAA GCA CAA
137257 CAG * 12 33/36 CAG CAA CAG CAG CAG CAG CAG CAA CAG CAA CAG CAG
137473 GCA * 8 22/24 GCA GCA GCA GCG GCG GCA GCA GCA
137500 GCA * 7 20/21 GCA GCA GCA GCA GCA GCA GCC
137639 AGC * 8 22/24 AGC AAC AGC AGC AGC AGC AGC AGT
137664 GCA * 7 19/21 GCA GCA GGA GCA GCA GCA ACA
137847 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAA CAC
137904 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA TAG
138371 ATC * 9 25/27 ATC ATC ATC ATC ATC ACC ATC ACC ATC
138900 GCA * 12 33/36 GCA ACA GCA GCA GCA GCA GCA GCA ACA GCA GCA TCA
139993 AAT * 7 19/21 AAT AAT AAT AAT AAT AAT TGT
152756 CAA * 7 21/21 CAA CAA CAA CAA CAA CAA CAA
159522 AAT * 7 20/21 AAT AAA AAT AAT AAT AAT AAT
170614 ATA * 7 19/21 ATA ATA ATA ATA ATA ATC ATC
180350 CTG * 7 19/21 CTG TTG CTG CTG CTA CTG CTG
185417 AAC * 8 22/24 AAC AAC AAC AAC AAC AAC AAT AAA
202436 ATA * 9 25/27 ATA ATA ATA ATA TTA ATA ATA ATC ATA
210708 ATC * 8 22/24 ATC ATC ATC ATC GTC ATC ATC TTC
253008 GTT * 10 27/30 GTT GTT GTG GTT GTA GTT GTT GTT GTT GTC
254972 TTA * 7 19/21 TTA TTA TTA TTA TTA TTA TGT
256789 GAC * 7 19/21 GAC AAC GAC AAC GAC GAC GAC
283581 TGT * 8 22/24 TGT TGT TGT TGT TCT TGT TAT TGT
284473 TTC * 7 19/21 TTC TTC TTC TTC TTC TTT TTT
316271 TGA * 7 20/21 TGA TGA TGA TGA TGA TGT TGA
-----------------------------------------------------------------------------------------
Total sequence length......................... 342068
Total number of repeats detected.............. 45
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 3 3 0 0 0 0 0 0 0 0 0 0 0
AAC 2 2 0 0 0 0 0 0 0 0 0 0 0
ATA 2 2 0 0 0 0 0 0 0 0 0 0 0
ATC 2 2 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 3 3 0 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAA 2 2 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 0 1 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 6 4 2 0 0 0 0 0 0 0 0 0 0
GCT 1 0 1 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 3 1 2 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 4 3 1 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTT 1 0 1 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
3 AAT + 2 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 6
0 AAG + 0 AGA + 2 GAA + 1 CTT + 1 TTC + 0 TCT = 4
2 AAC + 0 ACA + 3 CAA + 1 GTT + 0 TTG + 1 TGT = 7
0 ATG + 1 TGA + 0 GAT + 1 CAT + 2 ATC + 0 TCA = 4
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 1
1 AGC + 6 GCA + 4 CAG + 1 GCT + 1 CTG + 3 TGC = 16
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 1 TCG = 2
0 ACC + 2 CCA + 1 CAC + 1 GGT + 0 GTG + 0 TGG = 4
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7290764|gb|AE003439.1|AE003439 Drosophila melanogaster genomic scaffold 142000013386054 section 23 of 35, complete sequence
Position Repeat Coverage Repeat
3355 TGC * 8 22/24 TGC TGC TGC TGC TGC GCC TGC TGC
3556 TGC * 7 19/21 TGC TGG TGT TGC TGC TGC TGC
3733 GCT * 7 20/21 GCT GCT GCT CCT GCT GCT GCT
20279 AAT * 12 34/36 AAT AAA AAT AAT AAT AAT AAT ACT AAT AAT AAT AAT
37019 ACA * 8 22/24 ACA ACA ACA ACC GCA ACA ACA ACA
37143 CAA * 10 27/30 CAA CAA CAA CAA CAA CAA CAG CCA CAA CAT
37196 CAA * 8 22/24 CAA CAA CAA CAA CAA CAA CAG CAG
37781 TGG * 7 19/21 TGG CGG TGG TGG TGG TGG CGG
39774 CAG * 7 19/21 CAG CAG CAG CAC GAG CAG CAG
40055 GCA * 7 19/21 GCA GCA GCA GCA GCA GCA ACC
40254 GCG * 8 22/24 GCG GCG GCA GCG GCG GCG GCG GCA
40291 ATC * 7 19/21 ATC AGC ACC ATC ATC ATC ATC
78292 CAG * 10 27/30 CAG CAG CAG CAG CAG CAG CAG CAG CTA CAA
78418 CAG * 22 60/66 CAG CAG CAG CAG CAG CAA CAG CAG CAA CAG CAG CAG CAG CTG CAA CAG CAA CAG CAG CAG CAG CAA
78511 CAG * 7 19/21 CAG CAG CAG CAG CAG CAT GAG
121519 CAC * 8 23/24 CAC CAC CAC CTC CAC CAC CAC CAC
124535 CAA * 8 22/24 CAA CAG CAA CAA CAA CAA CAA CAC
172547 TAA * 7 19/21 TAA ATA TAA TAA TAA TAA TAA
197763 GCA * 8 22/24 GCA GCA GCA GCA GCG GTA GCA GCA
217457 CAT * 13 36/39 CAT CAT CAC CAT CAT CAT CAT CAT CAT CAT CAT CGT TAT
236011 GTT * 7 19/21 GTT GTT GTT GTG TTT GTT GTT
242743 CCG * 7 19/21 CCG CCG CTG CCG CCG CAG CCG
264393 CTG * 7 19/21 CTG ATG ATG CTG CTG CTG CTG
280679 CAT * 10 28/30 CAT CAT CGT CAT CGT CAT CAT CAT CAT CAT
283068 AGC * 7 19/21 AGC AGC AAC AAC AGC AGC AGC
283124 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CAA
304715 GGT * 8 22/24 GGT GGT GGT GGT GGT CGT GTT GGT
314406 TTG * 7 20/21 TTG TTG TTG TTG TTG TTG TTA
314557 TTA * 7 19/21 TTA TTA TTA TTA CGA TTA TTA
323346 GCG * 7 19/21 GCG GCG GCG GCA GCA GCG GCG
-----------------------------------------------------------------------------------------
Total sequence length......................... 328089
Total number of repeats detected.............. 30
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 0 1 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCG 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 3 2 1 0 0 0 0 0 0 0 0 0 0
CAT 2 0 1 1 0 0 0 0 0 0 0 0 0
CAG 5 3 1 0 0 0 1 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 1 TAA + 0 ATT + 1 TTA + 0 TAT = 3
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 3 CAA + 1 GTT + 1 TTG + 0 TGT = 6
0 ATG + 0 TGA + 0 GAT + 2 CAT + 1 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 2 GCA + 5 CAG + 1 GCT + 1 CTG + 2 TGC = 12
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 1 CAC + 1 GGT + 0 GTG + 1 TGG = 3
0 GGC + 2 GCG + 0 CGG + 0 GCC + 1 CCG + 0 CGC = 3
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7290724|gb|AE003438.1|AE003438 Drosophila melanogaster genomic scaffold 142000013386054 section 22 of 35, complete sequence
Position Repeat Coverage Repeat
11815 TCA * 7 19/21 TCA TCT TTA TCA TCA TCA TCA
15371 ACA * 7 19/21 ACA ACA ACA ACA ACA ACC ACC
20597 ACC * 8 22/24 ACC TCC ACC AAC ACC ACC ACC ACC
32247 GAT * 8 22/24 GAT GAT GAC GAT GAT GAT AAT GAT
35311 TTG * 10 27/30 TTG TTG TTG TTG TTG TTG TCG TTG TTC TTC
43900 AAC * 9 25/27 AAC AAC AAC AAC AAC AAC AAC AAT AAG
45142 ACC * 7 19/21 ACC ACC ACC ACC ACC GCC GCC
48408 GCA * 11 30/33 GCA GCG GAA GCA GCA GCA GCA GCA GCA GCA GAA
51008 GCA * 10 28/30 GCA GCA GCA GCA GCA GCA GCA GCA GCG ACA
62958 ATT * 10 28/30 ATT ATT ATT ATT ATT ATT ATT ATT GGT ATT
77054 GCA * 7 19/21 GCA GCA GCA GCA GCA ACA ACA
79000 AAT * 13 37/39 AAT AAT AAT AAA AAT AAT AAT AAT AAT GAT AAT AAT AAT
81234 GAC * 7 19/21 GAC GAC TAC GAC GAC GGC GAC
85229 TTG * 10 28/30 TTG TTT TTG TTG TTG TTG TTG CTG TTG TTG
101179 GCT * 9 25/27 GCT GCT GCT GCT GCT GCT GCT GCT TTT
105965 AGC * 8 22/24 AGC AAC AGC AGC AGC AGC AGC AAC
106127 GCA * 12 34/36 GCA GCA GCA GCA GCA GCA GCA GCA ACA GCA GCA GCC
117854 CAA * 8 22/24 CAA CAA CAA AAA CAA CAA CAA TAA
118112 GCA * 7 19/21 GCA GCC GCA ACA GCA GCA GCA
118157 GCA * 9 25/27 GCA ACA GCA GCA GCA GCC GCA GCA GCA
138384 TTG * 8 22/24 TTG TTG TTG TTG GTG TTG TTG TGG
152568 GCT * 9 25/27 GCT GAT GCT GCT GCT GCA GCT GCT GCT
152861 GCT * 7 19/21 GCT GCT GCG GCT GCT GCT GCA
152893 CTG * 8 22/24 CTG CTG CTG TTG TTG CTG CTG CTG
152921 TGC * 10 27/30 TGC TGC TGT TGC TGC TGC TGC TGC TGG TGG
153680 TGC * 7 19/21 TGC TGA TGC TGC TGC TGC TGT
153722 TGC * 7 19/21 TGC TGC TGC TGT TGT TGC TGC
157810 TGC * 7 20/21 TGC TGC TGC TGC TGC TGC TGG
157854 CTG * 10 28/30 CTG CTG TTG CTG CTG CTG CTG CTG CTG GTG
162736 ACA * 7 19/21 ACA ACA ACA GCA ACA ACA ATA
174148 AGC * 7 19/21 AGC ATC AGC ATC AGC AGC AGC
176283 AGC * 12 33/36 AGC AGC AGC AAC AGC AGC AAC AGC AGC AGC AGC ATC
176441 CAA * 7 19/21 CAA CAG CAA CAA CAA CAA CAG
176462 CAG * 7 20/21 CAG CAG CAG CAG CAG CAG CTG
176516 CAG * 7 19/21 CAG CAA CAG CAG CAA CAG CAG
180675 TAA * 7 19/21 TAA TAA TAA TAG CAA TAA TAA
196260 AAT * 7 20/21 AAT AAA AAT AAT AAT AAT AAT
200022 TTG * 7 20/21 TTG TTG TTG TTG TTG TTA TTG
221661 TAA * 7 19/21 TAA TAG TAA AAA TAA TAA TAA
234537 CCG * 7 19/21 CCG CCG CCG CCG CCG CTG CCT
237744 AAC * 10 28/30 AAC AAC AAC AAC AAC AAC AAC AGC AAC AAG
246407 CTG * 10 28/30 CTG CTG CTG CTG CTG CTG CTG CAG CTG CTC
248852 TGC * 7 19/21 TGC TGC TGC TGC TGC AGC CGC
250122 CAG * 7 20/21 CAG CAG CAG CAG CAG CAG CAA
251111 CTG * 8 22/24 CTG CTG CTG CTG CTG CGG CGG CTG
251346 CAG * 8 22/24 CAG ACG CAG CAG CAG CAG CAG CAG
255659 TTA * 7 20/21 TTA TTA TTA TTA TTA TTT TTA
256777 TAA * 11 30/33 TAA TAA CAA TAA TAA TAA TAA TAA TAA TGA AAA
262726 AGC * 7 19/21 AGC AGC AGC AGC AGC AAC AAC
263978 TTC * 7 19/21 TTC TTC CTC TTC TTC TTC TGC
273440 TGA * 7 19/21 TGA TGA TGA TGA TGA TGA TAT
277230 GCT * 8 22/24 GCT ACT GCT ACT GCT GCT GCT GCT
278775 TGC * 10 27/30 TGC TGC TGC TGT TGC TGC TGC TGC TGA TGG
278873 CTG * 7 19/21 CTG TTG TTG CTG CTG CTG CTG
278895 TGC * 12 33/36 TGC TGC TGC TGT TGT TGC TGC TGC TGC TGC TGT TGC
279107 TGC * 7 19/21 TGC TGG TGC TGC TGT TGC TGC
279404 TGC * 10 27/30 TGC TGC TGC TGT TGT TGC TGC TGC TGC TGG
280234 CTG * 7 20/21 CTG CTG TTG CTG CTG CTG CTG
-----------------------------------------------------------------------------------------
Total sequence length......................... 299372
Total number of repeats detected.............. 58
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 2 1 0 1 0 0 0 0 0 0 0 0 0
AAC 2 1 1 0 0 0 0 0 0 0 0 0 0
ATT 1 0 1 0 0 0 0 0 0 0 0 0 0
AGC 4 3 1 0 0 0 0 0 0 0 0 0 0
ACA 2 2 0 0 0 0 0 0 0 0 0 0 0
ACC 2 2 0 0 0 0 0 0 0 0 0 0 0
TAA 3 2 1 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 4 2 2 0 0 0 0 0 0 0 0 0 0
TTC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 9 5 4 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 6 3 3 0 0 0 0 0 0 0 0 0 0
GCT 4 4 0 0 0 0 0 0 0 0 0 0 0
CAA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 4 4 0 0 0 0 0 0 0 0 0 0 0
CTG 6 4 2 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
2 AAT + 0 ATA + 3 TAA + 1 ATT + 1 TTA + 0 TAT = 7
0 AAG + 0 AGA + 0 GAA + 0 CTT + 1 TTC + 0 TCT = 1
2 AAC + 2 ACA + 2 CAA + 0 GTT + 4 TTG + 0 TGT = 10
0 ATG + 1 TGA + 1 GAT + 0 CAT + 0 ATC + 1 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
4 AGC + 6 GCA + 4 CAG + 4 GCT + 6 CTG + 9 TGC = 33
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 1
2 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 1 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7290686|gb|AE003437.1|AE003437 Drosophila melanogaster genomic scaffold 142000013386054 section 21 of 35, complete sequence
Position Repeat Coverage Repeat
1689 TTA * 12 34/36 TTA TTA TTA TAA TTA TTA TTA TTA TTA TTA TTA CTA
30868 GAT * 8 22/24 GAT GAT GAT GAT GAT AAT GAT GCT
32488 ACA * 9 25/27 ACA ACA ACA GCA ACA AGA ACA ACA ACA
80964 CAG * 11 30/33 CAG CAG CAG CAG CAG CAG CAG GAG CAA CAG CAT
86731 CAG * 7 19/21 CAG CAG CAG CAG CAG CAG GTG
96464 ACA * 7 19/21 ACA ACA ATA ACA ACG ACA ACA
121171 ACT * 8 22/24 ACT ACT ACC ACT ACA ACT ACT ACT
121968 TAC * 8 22/24 TAC TAC TAC TTA TAC TAC TAC TAC
154168 TTG * 11 30/33 TTG TTG TTG TTG TTG TTG TTG TTG TTG CTG GGG
157947 GAC * 8 22/24 GAC GAC GAC AAC GAC AAC GAC GAC
166586 ACC * 7 19/21 ACC ATC ACC ACC ATC ACC ACC
177096 AAG * 7 19/21 AAG AAG AAG AAG AAG AAG ACA
189505 CAC * 7 19/21 CAC CAC CCC CAC CAC CAC CAT
192727 ACA * 14 38/42 ACA ACA ACA ACA ACA GCA ACA ACA ACA GCA ACA ACA ACG GCA
195434 GTT * 7 19/21 GTT GTT GTT GAT GAT GTT GTT
201590 TGC * 7 19/21 TGC TGT GGC TGC TGC TGC TGC
208150 TGT * 11 30/33 TGT TGT TGG TGT TGT TGT TGT TGT TGT TGG TGG
208859 TGT * 7 19/21 TGT TGT TGT TGT GGT TGT TGC
250357 GCC * 7 19/21 GCC GCC GCT GCC GTC GCC GCC
250419 TGC * 7 19/21 TGC TGC TGC CGC TGC TTC TGC
266313 TTA * 7 19/21 TTA ATA TTA TTA TTA TTA TTG
270653 TGA * 8 23/24 TGA TGA TGA TGA TGA TGA TGA TGG
289286 GCT * 7 19/21 GCT TCT GCT GCA GCT GCT GCT
290606 AGC * 7 20/21 AGC AGC AGC AAC AGC AGC AGC
290723 TCG * 8 22/24 TCG TCG TCG TCG TCG TCG TCC TCC
301146 GCA * 10 27/30 GCA GCA GCA GCA GCA TCA GCA CCA GCA TCA
301177 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CAT
301882 CAG * 7 19/21 CAG GCG CAG CAG CAG CAG CAG
-----------------------------------------------------------------------------------------
Total sequence length......................... 305046
Total number of repeats detected.............. 28
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 3 2 0 1 0 0 0 0 0 0 0 0 0
ACT 1 1 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 2 1 1 0 0 0 0 0 0 0 0 0 0
TTG 1 0 1 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 2 1 1 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 0 1 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 4 3 1 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 2 TTA + 0 TAT = 2
1 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 1
0 AAC + 3 ACA + 0 CAA + 1 GTT + 1 TTG + 2 TGT = 7
0 ATG + 1 TGA + 1 GAT + 0 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 1 ACT + 0 CTA + 1 TAC = 2
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 1 GCA + 4 CAG + 1 GCT + 0 CTG + 2 TGC = 9
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 1 TCG = 2
1 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7290653|gb|AE003436.1|AE003436 Drosophila melanogaster genomic scaffold 142000013386054 section 20 of 35, complete sequence
Position Repeat Coverage Repeat
5447 TAT * 7 19/21 TAT TAT TAT TTT TAT TAA TAT
11745 CAG * 8 22/24 CAG CAG CAG CAG CAG CAA CAG CTG
28960 AAC * 7 19/21 AAC AAC AAC AAC AGC AAC AAT
44939 TGT * 10 27/30 TGT TGT TGT TGT TGT TGA TGT TGT TGC AGT
57081 AGG * 7 19/21 AGG AAG CGG AGG AGG AGG AGG
58376 GAG * 7 19/21 GAG GAG GAG GAC GAG CAG GAG
104612 AGG * 7 19/21 AGG AGA AGG AGG AGG CGG AGG
127658 GCA * 10 27/30 GCA GCA GCA GCA GCA GTC GCA GCA GCA ACA
128800 TGC * 12 33/36 TGC TGC TGC TGC TGA TGC TGC TGC TGC TGC TGC TTA
130761 ATT * 7 19/21 ATT ATC ATT ATT ATT ACT ATT
134728 GCA * 11 30/33 GCA GAA GCA GCA GCA GCA GCA GCA TCA GCA GCG
168575 ACA * 7 19/21 ACA ACA ACA AAA ACA ACA ACT
169376 GCA * 10 28/30 GCA GCA GCA ACA GCA GCA GCA GCA GCA GAA
171480 CAT * 7 20/21 CAT CAT CAT CAT CGT CAT CAT
182230 CTC * 7 19/21 CTC CTC CTT CTC CTG CTC CTC
185394 TGC * 10 28/30 TGC TGC TGC AGC TGC TGC TGC TGC TGC TGG
185476 GCT * 7 19/21 GCT GCT GCA GCT GCT GCA GCT
192954 TAG * 10 28/30 TAG AAG TAG TAG TAG TAG TAG TAG TAG TAT
198818 ATT * 9 25/27 ATT ATT ATT ATT ATT ATT ATT ATT CGT
199222 TGC * 10 28/30 TGC TGC TGC TGC TGC TGC TGC TGC TGT TGG
199378 TTG * 10 29/30 TTG TTG TTG TTG TTG TTG TTA TTG TTG TTG
199454 TGT * 8 22/24 TGT TGC TGT TGT TGT TGT TGT TAT
227434 TGA * 7 20/21 TGA TGA TGC TGA TGA TGA TGA
279238 TTA * 8 23/24 TTA TGA TTA TTA TTA TTA TTA TTA
305125 TTA * 7 19/21 TTA TTA CCA TTA TTA TTA TTA
-----------------------------------------------------------------------------------------
Total sequence length......................... 307017
Total number of repeats detected.............. 25
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 2 2 0 0 0 0 0 0 0 0 0 0 0
AGG 2 2 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TAG 1 0 1 0 0 0 0 0 0 0 0 0 0
TTA 2 2 0 0 0 0 0 0 0 0 0 0 0
TTG 1 0 1 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 2 1 1 0 0 0 0 0 0 0 0 0 0
TGC 3 0 3 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 3 0 3 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 2 ATT + 2 TTA + 1 TAT = 5
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 1 ACA + 0 CAA + 0 GTT + 1 TTG + 2 TGT = 5
0 ATG + 1 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 1 TAG + 0 ACT + 0 CTA + 0 TAC = 1
2 AGG + 0 GGA + 1 GAG + 0 CCT + 1 CTC + 0 TCC = 4
0 AGC + 3 GCA + 1 CAG + 1 GCT + 0 CTG + 3 TGC = 8
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7290600|gb|AE003435.1|AE003435 Drosophila melanogaster genomic scaffold 142000013386054 section 19 of 35, complete sequence
Position Repeat Coverage Repeat
895 TGT * 8 22/24 TGT TGT TCT TGT TGT TGT TGT TCT
3740 GGT * 11 30/33 GGT GGT GGT GGT GGT GGT GGT GGT GGA GGG GCT
4012 TGC * 7 19/21 TGC TGC TGC TGG TGG TGC TGC
5878 AGT * 15 42/45 AGT AGT ATA AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGG
33675 CTC * 11 30/33 CTC TTC CTC CTC TTC CTC CTC CTC CTC CTC CAC
34331 CCT * 11 30/33 CCT GCT CCT GCT CCT CCT CCT CCT CCT CCT CAT
36472 ATT * 12 33/36 ATT ATT ATT ATT ATT ATT ATT ATT ATC CAT ATT ATT
36990 TAT * 8 22/24 TAT TAT TAT TAT TAT TAT TCT TAG
42459 GCA * 8 22/24 GCA GCA GCA GCA GCA GCA ACA ACA
75318 TTG * 7 19/21 TTG TTG CTG TTA TTG TTG TTG
76887 CCA * 8 22/24 CCA CCA TCA CCA CCA CCA CCA TCA
78443 CTC * 12 33/36 CTC CTC CTC CAC CTC CTC CTT CTC CTC CTT CTC CTC
110301 CTC * 7 19/21 CTC CAC CTC CTC CTC CTC CTA
110323 GCT * 7 19/21 GCT ACT GCT GCT GCT GCT GCC
124107 TAC * 7 20/21 TAC TAC TAC TAC TAC TAC TAA
125784 CAG * 7 19/21 CAG CAG CAT CAG CAG CAG CAA
125808 CAG * 7 19/21 CAG CAG CAC CAG CAG CAG CAA
125832 CAG * 7 19/21 CAG CAG CAG CAG CAC CAG CAA
125856 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CAA
125928 CAG * 11 30/33 CAG CTG CAG CAG CAA CAG CAG CAG CAG CAG CAT
131489 ACC * 7 19/21 ACC ATC ACC ACC ACC ACC AGC
131510 AGC * 8 22/24 AGC ACC AGG AGC AGC AGC AGC AGC
131534 ATC * 7 19/21 ATC ATC ATC ATC ATC ATC AGA
156622 TTG * 10 28/30 TTG TTG TTT TTG TTG TTG TTG TTG TGG TTG
158766 AGC * 7 19/21 AGC AGC AGC ACC AGC AGC ACC
177282 GAT * 8 23/24 GAT GAT GAT GAT GAC GAT GAT GAT
177486 TAT * 12 33/36 TAT TAC TAC TAT TAT TAT TAT TAT TAT TAT TAT TTT
179369 TGC * 11 30/33 TGC TGT TGC TGC TGC TGC TGC TGC TGT TGC GGC
204386 GCA * 7 19/21 GCA GCA GCA GCA ACA GCA GGA
210739 CAG * 10 27/30 CAG CAG CAG CAG CAA CAG CAG CAA CAG AAG
211326 AGC * 12 34/36 AGC GGC AGC AGC AGC AGC AGC AGC AGC AGC AGC AAC
211739 CAG * 7 19/21 CAG CAG CAG CAG CAG CAG AAA
211814 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CAA
212182 GAG * 8 23/24 GAG GAG GAG GAG GAG GAC GAG GAG
236146 CAA * 7 19/21 CAA CAA CAA CAA CTA CAA CAG
269858 ATA * 7 19/21 ATA CTA ATA ACA ATA ATA ATA
277063 ACA * 7 19/21 ACA ACA AAA TCA ACA ACA ACA
277122 CAT * 7 19/21 CAT CAT CAT TAT CAT CAT CGT
282309 GCA * 7 19/21 GCA GCA GCC GCA GCA GCC GCA
282432 CAG * 23 64/69 CAG CAG CAA CAG CAA CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAA CAA CAG CAG CAG CAG CAG CAA
298018 AGC * 7 19/21 AGC AGC ATC AGC AGC AGA AGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 300557
Total number of repeats detected.............. 41
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 1 0 1 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGT 1 0 0 1 0 0 0 0 0 0 0 0 0
AGC 4 3 1 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 2 1 1 0 0 0 0 0 0 0 0 0 0
TAC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 2 1 1 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 1 1 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 3 3 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 9 6 2 0 0 0 1 0 0 0 0 0 0
CTC 3 1 2 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 1 ATT + 0 TTA + 2 TAT = 4
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 1 CAA + 0 GTT + 2 TTG + 1 TGT = 5
0 ATG + 0 TGA + 1 GAT + 1 CAT + 1 ATC + 0 TCA = 3
1 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 1 TAC = 2
0 AGG + 0 GGA + 1 GAG + 1 CCT + 3 CTC + 0 TCC = 5
4 AGC + 3 GCA + 9 CAG + 1 GCT + 0 CTG + 2 TGC = 19
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
1 ACC + 1 CCA + 0 CAC + 1 GGT + 0 GTG + 0 TGG = 3
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7290572|gb|AE003434.1|AE003434 Drosophila melanogaster genomic scaffold 142000013386054 section 18 of 35, complete sequence
Position Repeat Coverage Repeat
18055 CAG * 7 19/21 CAG CAG AAG AAG CAG CAG CAG
18285 AAC * 10 27/30 AAC AAC AAC AAC AGC AAC AAC AAC ACC AGC
29370 GCA * 7 19/21 GCA GCA GCA GCA GTT GCA GCA
29403 GCA * 7 19/21 GCA ACA GCA ACA GCA GCA GCA
36699 TAT * 10 27/30 TAT TAT TAA TAT TAT TAT TAT TAT TTT TTT
36821 CAT * 7 19/21 CAT CAT CAG CAT CAT CAG CAT
42396 AAC * 7 19/21 AAC AAC AAC AAA AAC AAC ATC
48606 ACA * 7 19/21 ACA AAA ACA ACA ACA ACA AAA
62346 GTT * 11 30/33 GTT GTT GTT GTT GTT GCT GCT GTT GTT GTT GTC
62567 CTT * 11 31/33 CTT GTT CTT CAT CTT CTT CTT CTT CTT CTT CTT
63970 AGG * 9 25/27 AGG AGG AGG AGG AGG AAG AGG CGG AGG
89485 TAA * 12 34/36 TAA TAA TAA TAA TAG TTA TAA TAA TAA TAA TAA TAA
102629 GCA * 8 22/24 GCA GCA GCC GCA GCA GCC GCA GCA
102955 TAT * 7 19/21 TAT TTT TAT TAT TAT TAT TTT
107141 GCA * 8 22/24 GCA GCA GCA GCA GCA GCA GGA TCA
143946 ATT * 7 19/21 ATT ATT GTT ATT ATT ATT CTT
151360 TGT * 7 19/21 TGT TGT TGT TGT TGT TTT TTT
164644 TGC * 10 28/30 TGC TGC TAC TGC TGC TGC TGC TGC TGC TGT
168751 CCA * 10 28/30 CCA CTA GCA CCA CCA CCA CCA CCA CCA CCA
183678 CAG * 7 19/21 CAG TAG CAG CAT CAG CAG CAG
185255 TGC * 7 20/21 TGC GGC TGC TGC TGC TGC TGC
185450 CAT * 7 19/21 CAT CAT GAT CAT CAT CGT CAT
205942 CTG * 10 27/30 CTG CTG CTG CTG CTG TTG CTG TTG CTG ATG
206146 CTG * 7 19/21 CTG TTG CTG TTG CTG CTG CTG
206171 TGC * 7 19/21 TGC AGG TGC TGC TGC TGC TGC
210107 GCA * 7 19/21 GCA GCA GCA GGA ACA GCA GCA
214105 TGC * 7 19/21 TGC TGC TGC TGC TGC TGT TGT
214126 TGT * 8 22/24 TGT TGT TGT TGC TGT TGT TGC TGT
226343 ATC * 10 27/30 ATC ATC ATC ATC ATC ATC ATC ATC GTT CTC
226789 TTG * 12 33/36 TTG TTG TTG TTG TTG TTG TTG TTG TTG CTG CTG CTG
228556 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAA CAT
228580 GCA * 8 23/24 GCA ACA GCA GCA GCA GCA GCA GCA
230811 GAT * 7 19/21 GAT GAT GGT GAT GGT GAT GAT
234565 AAT * 7 19/21 AAT AAT AAT AAC AAT AAT AAC
236074 TGC * 8 22/24 TGC TGC TGC TGC GGC TGC TGC TGT
236821 GCA * 7 19/21 GCA GCA GCA GCA GCA ACA CCA
242899 CTC * 8 22/24 CTC CTC CTC CTC CTC CTC CTT CTA
243156 ATT * 7 19/21 ATT ATT ATT ATC ATG ATT ATT
244049 CAT * 11 30/33 CAT AAT CAT CAT CAT CGT CAT CAT CAT CAT CGT
252668 ATA * 8 22/24 ATA ATA ATA ATA ATA ATA ATA AAT
262761 TTA * 8 23/24 TTA TTG TTA TTA TTA TTA TTA TTA
270502 CAG * 12 33/36 CAG CAG CAA CAG CAG CAG CAA CAG CAG CAG CAG CAA
276980 AGC * 7 19/21 AGC TGC TGC AGC AGC AGC AGC
280946 TCA * 15 41/45 TCA TCA TCA TCA TCA TCA TCA TCA TTA TTA TTA TCA TCA TTA TCA
287001 CAC * 8 22/24 CAC CAC CAC CAT CAT CAC CAC CAC
287084 GCA * 8 22/24 GCA CCA CCA GCA GCA GCA GCA GCA
287109 CAG * 7 19/21 CAG CAG CAG CAG CAA CAG CAT
287288 GCA * 13 36/39 GCA GCA ACT GCA GCA GCA GCA GCA GCA GCA ACA GCA GCA
287330 GCA * 8 22/24 GCA GCA GCA GCA GCA GCA TCA CCA
287546 GGA * 7 19/21 GGA GGC GGA GGA GGA GCA GGA
290317 AAT * 7 19/21 AAT AAC AAT AAA AAT AAT AAT
291865 TTC * 7 19/21 TTC TTC TTC TTG TTG TTC TTC
-----------------------------------------------------------------------------------------
Total sequence length......................... 302937
Total number of repeats detected.............. 52
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 2 2 0 0 0 0 0 0 0 0 0 0 0
AAC 2 1 1 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 2 2 0 0 0 0 0 0 0 0 0 0 0
ATC 1 0 1 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 0 1 0 0 0 0 0 0 0 0 0 0
TAT 2 1 1 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 0 1 0 0 0 0 0 0 0 0 0 0
TTC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 5 4 1 0 0 0 0 0 0 0 0 0 0
TCA 1 0 0 1 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 0 1 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 10 9 0 1 0 0 0 0 0 0 0 0 0
CAT 3 2 1 0 0 0 0 0 0 0 0 0 0
CAG 5 4 1 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTT 1 0 1 0 0 0 0 0 0 0 0 0 0
CTG 2 1 1 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
2 AAT + 1 ATA + 1 TAA + 2 ATT + 1 TTA + 2 TAT = 9
0 AAG + 0 AGA + 0 GAA + 1 CTT + 1 TTC + 0 TCT = 2
2 AAC + 1 ACA + 0 CAA + 1 GTT + 1 TTG + 2 TGT = 7
0 ATG + 0 TGA + 1 GAT + 3 CAT + 1 ATC + 1 TCA = 6
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 1 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 3
1 AGC + 10 GCA + 5 CAG + 0 GCT + 2 CTG + 5 TGC = 23
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 1 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7290549|gb|AE003433.1|AE003433 Drosophila melanogaster genomic scaffold 142000013386054 section 17 of 35, complete sequence
Position Repeat Coverage Repeat
3426 CGA * 8 22/24 CGA CGA CGA CGA TGA CGA AGA CGA
3466 TGT * 7 20/21 TGT TGT TAT TGT TGT TGT TGT
8039 CAA * 9 25/27 CAA CAA AAA CAA CAA CAG CAA CAA CAA
11101 AAT * 12 33/36 AAT AAT AAT AAT AAT AAT AAT AAT AAC AAC AAC AAT
17693 CAA * 8 22/24 CAA CAG CAA CAA CAA CAA CAA CAG
18550 TGT * 8 22/24 TGT TGT TGT TGT TGT TGT TGT TTC
20440 TTC * 8 22/24 TTC TTC TTC TTC TTC TTC GAC TTC
20722 TCA * 11 31/33 TCA TCA TCA TTA TCA CCA TCA TCA TCA TCA TCA
21277 TGT * 7 19/21 TGT TCT TGA TGT TGT TGT TGT
21447 TGC * 7 20/21 TGC TGC TGC CGC TGC TGC TGC
29775 ATG * 7 19/21 ATG ATG ATG ATA ATG ATG GTG
32461 AAT * 8 23/24 AAT AGT AAT AAT AAT AAT AAT AAT
39556 TAA * 7 19/21 TAA CAA TAA TAA TAA TAA CAA
42238 GTG * 9 25/27 GTG GTG GTG GTG GTG GTG GTG GCG GCG
42378 CAT * 8 22/24 CAT AAT CAT CAT CAT CAT CAT CAA
42403 ACA * 8 22/24 ACA ACA ACA ACA ACA ACA ACA ATG
42986 GCA * 8 23/24 GCA GCA GCA ACA GCA GCA GCA GCA
43217 GCA * 10 27/30 GCA CCA CCA GCA GCA GCA GCA GCA GCA ACA
43281 CAG * 11 30/33 CAG CAG CAA CAG CAG CAG CAG CAG CAG CAT CAT
43467 GCT * 7 19/21 GCT GCT GCT GCT GCT GCG GCA
43861 CAG * 14 38/42 CAG CAG CAG CGG CGG CAG CAG CAG CAG CAG CAG CAG CTG CAA
44777 GCA * 11 30/33 GCA GCA GCA ACA GCA GCA GCA GCA CCA TCA GCA
53384 CTC * 7 19/21 CTC CTC CTC CTC CTC CTG CTG
53405 CTG * 8 22/24 CTG CTG CTG CTG CTG TTG CTG GTG
53432 CTC * 7 19/21 CTC CAC TTC CTC CTC CTC CTC
54226 GCT * 7 19/21 GCT GCT GCT GCT GCT GTT GTT
54255 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC TGT TGG
54781 TGC * 11 32/33 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGG
54874 TGC * 11 30/33 TGC TGC TGC GAC TGC TGC TGC TGC TGC TGT TGC
56074 TGC * 7 19/21 TGC TGT TGC TGC TGC TGC TGT
56136 CTG * 13 36/39 CTG CTG CTG CTG CTG TTG CTG CTG TTG TTG CTG CTG CTG
56187 CTG * 7 19/21 CTG CTG CTG CTG CTG CTG CCT
56677 TCC * 7 19/21 TCC TCA TCC TCT TCC TCC TCC
56842 TCC * 7 20/21 TCC TCC TCC TCG TCC TCC TCC
56941 TGC * 8 22/24 TGC TGC TGT TGC TGC TGC TGC TGA
57011 TGC * 7 19/21 TGC TAC TGC TGC TGT TGC TGC
57054 TGC * 7 19/21 TGC TGC GGC TGC TGT TGC TGC
57178 TGC * 8 22/24 TGC TGC TGC TGC TGT TGC TGC TGA
57205 TGC * 8 22/24 TGC TGC TGC TGT TGC TGC TGA TGC
58063 TCT * 7 19/21 TCT TCG CCT TCT TCT TCT TCT
58186 TAT * 7 19/21 TAT TAT TAT TAC TAT TAT TCT
59174 TTC * 7 19/21 TTC CTA TTC TTC TTC TTC TTC
65652 CAC * 11 31/33 CAC CAC CAC CAC CAC CAC CAC CAC AAC CAC CAA
65880 ACA * 11 31/33 ACA ACA ACA ACA GCA ACA GCA ACA ACA ACA ACA
68268 CGT * 8 22/24 CGT CGT CGT CGT CGT CGT CGT TTT
70221 AAC * 8 22/24 AAC GAC AAC AAC AAC AAC AAC AAT
80518 AGA * 7 19/21 AGA AGA AGA AGA AGA AGT AGT
85560 CAC * 7 19/21 CAC CAT CAC CAC CAC CGC CAC
86147 TCC * 7 19/21 TCC TGC TCC TCC TCC GCC TCC
91854 GAG * 7 19/21 GAG GAG GAG CAG GAG CAG GAG
102814 ATT * 7 19/21 ATT ATT ATT ATT ATT ATT TTC
126041 TGT * 8 22/24 TGT TGT TGT TGT TTT AGT TGT TGT
130286 TGC * 10 27/30 TGC TGT TGC TGC TGC CGC TGC TGC TGC AGC
131145 TTG * 7 19/21 TTG CTG TTG GTG TTG TTG TTG
131167 TGT * 19 53/57 TGT TGT TGT TGT TTC TGT TGT TGT TGT TGC TGT TGT TGT TGT TGC TGT TGT TGT TGT
138963 ATG * 7 19/21 ATG ATG ATG ATG ATG ATG AAA
143288 TTG * 10 28/30 TTG TTG TTG TTG TTG TTG GTC TTG TTG TTG
151752 CAG * 7 19/21 CAG CGC CAG CAG CAG CAG CAG
151818 GCC * 7 19/21 GCC GCT GCC GCC GCC GCC GCG
152544 GAC * 7 19/21 GAC GAC GAC GAC GAC GAA GAG
152565 GAG * 8 22/24 GAG GAG GAG GAG GAA GAG GAG CAG
152730 CAT * 8 23/24 CAT CAT CAT CAT CAT CAT CAC CAT
160367 CTA * 10 27/30 CTA CTA CAA CTA CTA CTA CAA CTA CTA CAA
160623 GCA * 7 20/21 GCA GCT GCA GCA GCA GCA GCA
168597 CTT * 7 20/21 CTT CTT CTT TTT CTT CTT CTT
177773 TTG * 11 31/33 TTG TTG TTG TTG TTG TTG TTA TTG TTT TTG TTG
187192 CAC * 7 20/21 CAC CAC CAC CAC CAC CAT CAC
195592 TGA * 8 24/24 TGA TGA TGA TGA TGA TGA TGA TGA
201985 GCA * 8 22/24 GCA GCA GCA GCA GCA GCA GCG GGA
202042 GCA * 7 19/21 GCA GCA GCA GCG GCG GCA GCA
202178 CTT * 7 20/21 CTT CTT CTT CTT CAT CTT CTT
206421 TGA * 11 30/33 TGA TGA TGA TAA TAA TGA TGA TGA TGA TGA TGG
209425 CTA * 7 20/21 CTA CTA CTA CTA CTA CTA CTG
209461 CAA * 7 19/21 CAA CAT CAA CTA CAA CAA CAA
212208 AAT * 7 19/21 AAT AAT AAT AAT AAC AAT AAC
215893 GCA * 11 30/33 GCA ACA CCA GCA GCA GCA GCA GCA GCA ACA GCA
215951 CAG * 7 19/21 CAG CAA CAG CAG CAA CAG CAG
216195 AGC * 14 39/42 AGC AGC AAC AGC AGC AGC AGC AGC AGC AGC AGC AAC AAC AGC
220266 ACA * 7 19/21 ACA ACA ACA ATA GCA ACA ACA
231809 AGC * 11 30/33 AGC AGC AGC AGC AGC AGC AGC AGC CGC TGC CGC
231998 CAA * 8 22/24 CAA CAA CAA CAA AAA CAT CAA CAA
244555 AAC * 10 27/30 AAC AAC AAC AAC AAC AAC AAC AGC AGC AGC
246691 CAG * 14 38/42 CAG CAT CAG CAG CAG CAT CAG CAG CAG CAG CAG CAA CAG TAG
247299 CTG * 12 33/36 CTG TTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CCC
254658 TGT * 9 25/27 TGT TGT TGT TGA TGT TGT TGT TGT TTT
262124 ATC * 11 30/33 ATC ATC ATC ATC ATC ATC ATC ATC ATA AGC AGC
270390 TTG * 7 19/21 TTG TTG TTC CTG TTG TTG TTG
271607 AAC * 11 31/33 AAC AAC AAC AAC ATT AAC AAC AAC AAC AAC AAC
271643 AAC * 7 20/21 AAC AAC AAC AAC AAC AAC AAA
273066 GTT * 8 22/24 GTT GTT GTT GTT GTT GTT GTT AGT
275968 TGT * 8 22/24 TGT TGT TGT AGT TAT TGT TGT TGT
280032 GTA * 8 22/24 GTA GTA GAA GTT GTA GTA GTA GTA
280069 TAG * 43 116/129 TAG TAG CAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAT AAG AGT AAG AGT AGT
283654 AGC * 8 22/24 AGC AGC AGC AGC AGC AGC ATC ATC
286721 GCA * 7 21/21 GCA GCA GCA GCA GCA GCA GCA
295403 ATC * 12 33/36 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATA ATC GTG
297575 GAC * 11 30/33 GAC GAC GAC GAC GAC GAC GAC GAC GAG GAG GAG
298403 GAT * 8 22/24 GAT GAT GAT GAT AAT GAT GAC GAT
298472 GAG * 7 19/21 GAG GAG GAG GAA GAG GAG GAT
300035 TGC * 8 22/24 TGC TTC TGC TGC TGC TGC TGT TGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 303258
Total number of repeats detected.............. 100
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 3 2 1 0 0 0 0 0 0 0 0 0 0
AAC 4 2 2 0 0 0 0 0 0 0 0 0 0
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 2 2 0 0 0 0 0 0 0 0 0 0 0
ATC 2 0 2 0 0 0 0 0 0 0 0 0 0
AGA 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 3 1 1 1 0 0 0 0 0 0 0 0 0
ACA 3 2 1 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TAG 1 0 0 0 0 0 0 0 0 0 0 0 1
TTG 4 2 2 0 0 0 0 0 0 0 0 0 0
TTC 2 2 0 0 0 0 0 0 0 0 0 0 0
TGA 2 1 1 0 0 0 0 0 0 0 0 0 0
TGT 7 6 0 0 0 1 0 0 0 0 0 0 0
TGC 12 9 3 0 0 0 0 0 0 0 0 0 0
TCA 1 0 1 0 0 0 0 0 0 0 0 0 0
TCT 1 1 0 0 0 0 0 0 0 0 0 0 0
TCC 3 3 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 3 3 0 0 0 0 0 0 0 0 0 0 0
GAC 2 1 1 0 0 0 0 0 0 0 0 0 0
GTA 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 8 5 3 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 4 4 0 0 0 0 0 0 0 0 0 0 0
CAT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 5 2 1 2 0 0 0 0 0 0 0 0 0
CAC 3 2 1 0 0 0 0 0 0 0 0 0 0
CTA 2 1 1 0 0 0 0 0 0 0 0 0 0
CTT 2 2 0 0 0 0 0 0 0 0 0 0 0
CTG 4 2 1 1 0 0 0 0 0 0 0 0 0
CTC 2 2 0 0 0 0 0 0 0 0 0 0 0
CGA 1 1 0 0 0 0 0 0 0 0 0 0 0
CGT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
3 AAT + 0 ATA + 1 TAA + 1 ATT + 0 TTA + 1 TAT = 6
0 AAG + 1 AGA + 0 GAA + 2 CTT + 2 TTC + 1 TCT = 6
4 AAC + 3 ACA + 4 CAA + 1 GTT + 4 TTG + 7 TGT = 23
2 ATG + 2 TGA + 1 GAT + 2 CAT + 2 ATC + 1 TCA = 10
0 AGT + 1 GTA + 1 TAG + 0 ACT + 2 CTA + 0 TAC = 4
0 AGG + 0 GGA + 3 GAG + 0 CCT + 2 CTC + 3 TCC = 8
3 AGC + 8 GCA + 5 CAG + 2 GCT + 4 CTG + 12 TGC = 34
0 ACG + 1 CGA + 2 GAC + 1 CGT + 0 GTC + 0 TCG = 4
0 ACC + 0 CCA + 3 CAC + 0 GGT + 1 GTG + 0 TGG = 4
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7290523|gb|AE003432.1|AE003432 Drosophila melanogaster genomic scaffold 142000013386054 section 16 of 35, complete sequence
Position Repeat Coverage Repeat
2268 AAC * 8 22/24 AAC AAC AAC AAC AAC AAC ATC ATC
2315 CAA * 7 19/21 CAA CAA CAA CAA CAA CAG CAG
15621 TAT * 8 22/24 TAT TAT TAT TAT TAT TGT TCT TAT
16588 CAG * 14 38/42 CAG GAG CAA CAG CAG CAG CAG CAG CAG CAG CAG CAG CAC AAG
17892 GCT * 7 21/21 GCT GCT GCT GCT GCT GCT GCT
20366 TAT * 7 19/21 TAT TAT TAT TAT TTT TAT TTT
21033 ACA * 9 25/27 ACA ACA ACA ACA GCA ACA ACA ACA ACT
23786 AAC * 7 19/21 AAC AAT AAC AAC AGC AAC AAC
25209 CTG * 19 52/57 CTG CGG CTG TTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG TTT CTG TTG
50965 GCT * 11 30/33 GCT GAT GTT GCT GCT GCT GCT GCT GCT GTT GCT
51000 TGC * 7 19/21 TGC TGC TGT TGC TGT TGC TGC
57683 AGC * 8 23/24 AGC AGC AGC ATC AGC AGC AGC AGC
68215 TTG * 14 39/42 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTT TTG TCG CTG
78698 TGA * 7 19/21 TGA TGA CGA TGA CGA TGA TGA
79836 CCA * 8 22/24 CCA CCA TCA CCA ACA CCA CCA CCA
106942 AGA * 7 20/21 AGA AGA AGA AGA AGA AGA AGC
111485 CAA * 10 27/30 CAA CAA CAA GAA CAA GAA CAA CAA CAA CAT
162194 TGT * 8 22/24 TGT TGT TGT TGT TGT TGT TGT CGC
194605 GCA * 7 19/21 GCA GCA CCA GCT GCA GCA GCA
194630 CAG * 20 54/60 CAG CAG CAG CAG CAA CAG CAG CAG CAG CAA CAT CAG CAG CAG CAG CAG CAG CAA CAA CAA
197622 CAG * 8 22/24 CAG CAA CAG CAA CAG CAG CAG CAG
197661 CAG * 7 20/21 CAG CAG CAG CAG CAG CAT CAG
198305 CCT * 11 30/33 CCT CCT CCT CCT CCT CCT CCT CAT CCT CGT CGT
200318 TTA * 8 22/24 TTA TTA TTA TTA TTA TTA TTG TTT
202749 AAC * 11 32/33 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAA
208744 ACA * 7 19/21 ACA ACA ACA ACA ACA ACG ACC
210132 GCA * 7 19/21 GCA GCA GCA GCA GCA TCA GAA
210156 GCA * 7 19/21 GCA GCA GCA GCA GCA TCA GAA
210181 CAA * 7 19/21 CAA CAG CAA CAA CAA CAA CAG
213162 CAG * 7 19/21 CAG CAG CAG GCG CAG CAG CAG
250659 CAG * 11 30/33 CAG GAG CAG CAG CAG CAG CAG CAG CTG CAG CTG
250743 GAC * 8 22/24 GAC GAT GAC GAC GAC GAC GAT GAC
256019 TGC * 8 22/24 TGC TGC TGT TGT TGC TGC TGC TGC
256045 CTG * 8 23/24 CTG CTG CTG CTG CTG CTG CTG CTT
259273 AAT * 10 28/30 AAT AAA AAT AAT AGT AAT AAT AAT AAT AAT
268499 CAG * 10 27/30 CAG CAG CAA CAG CAG CAG CAG CAG CAA CAT
268667 AGC * 13 36/39 AGC AGC AGC AGC AGC AGC AGC AGC ATC AGC GGC AGC AAC
268930 TGC * 9 25/27 TGC TGC TGC TGC GGC TGC TGC AGC TGC
280197 CAT * 8 22/24 CAT CAT CAT CAT CAT CAT GAC CAT
280881 TGA * 8 22/24 TGA TGA TGA TGA TGA TGA TTT TGA
307329 TTC * 7 19/21 TTC TTC TTC TTC TTC ATC TTG
318199 CAA * 9 25/27 CAA AAA CAA CAA CAA CAA CAA CAA TAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 319596
Total number of repeats detected.............. 42
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 0 1 0 0 0 0 0 0 0 0 0 0
AAC 3 2 1 0 0 0 0 0 0 0 0 0 0
AGA 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 1 0 1 0 0 0 0 0 0 0 0 0
ACA 2 2 0 0 0 0 0 0 0 0 0 0 0
TAT 2 2 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 0 0 1 0 0 0 0 0 0 0 0 0
TTC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 2 2 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 3 3 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 3 3 0 0 0 0 0 0 0 0 0 0 0
GCT 2 1 1 0 0 0 0 0 0 0 0 0 0
CAA 4 3 1 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 7 3 2 1 0 1 0 0 0 0 0 0 0
CTG 2 1 0 0 0 1 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 2 TAT = 4
0 AAG + 1 AGA + 0 GAA + 0 CTT + 1 TTC + 0 TCT = 2
3 AAC + 2 ACA + 4 CAA + 0 GTT + 1 TTG + 1 TGT = 11
0 ATG + 2 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 1 CCT + 0 CTC + 0 TCC = 1
2 AGC + 3 GCA + 7 CAG + 2 GCT + 2 CTG + 3 TGC = 19
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 1 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7290491|gb|AE003431.1|AE003431 Drosophila melanogaster genomic scaffold 142000013386054 section 15 of 35, complete sequence
Position Repeat Coverage Repeat
8965 CAT * 8 22/24 CAT CAT CAT CAT CTT CAT CTT CAT
9860 CAA * 9 25/27 CAA CAA CAA CAA CAA CAA CAG CAA CAG
20468 CTA * 8 23/24 CTA CTA CTA CTA CTA CTA CTA TTA
39372 CAC * 7 19/21 CAC CAC CAC CAC CAG CAA CAC
39597 CAG * 7 19/21 CAG CAG TAG CAG CAG CAG CAA
39748 CAA * 7 19/21 CAA CAA CAA CAG CAG CAA CAA
52788 ATG * 7 19/21 ATG ATG AAG ATT ATG ATG ATG
53487 ATC * 8 22/24 ATC ATC ATC ATC ATC ATC ATC TTG
59454 GCT * 8 22/24 GCT GCT GAT GCT GCT GCT GCT GCA
60979 TGA * 7 20/21 TGA TAA TGA TGA TGA TGA TGA
65306 TGC * 9 25/27 TGC TGC TGC TGC TGT TGC TGC TGT TGC
70326 GAT * 7 19/21 GAT GAT GAT GAT GAT GAT GGG
75502 TCA * 8 22/24 TCA TCA TCA TCA TCA TCA GCA GCA
75526 GCA * 12 33/36 GCA GCA GCA GCA GCA GCA GCA GAA GCG GCA GCA GCT
75755 CTG * 7 19/21 CTG CTG CTG CTT CTG CTG CTT
79359 GCA * 8 22/24 GCA GCA GCA GAA GCA ACA GCA GCA
79509 CAT * 8 22/24 CAT CGT CAT CAT CAT CAT AAT CAT
84978 TCA * 8 22/24 TCA TCC TCA TCA TCA TCA TTA TCA
85982 AGC * 8 22/24 AGC AGG AGC AGC AAC AGC AGC AGC
86371 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG TCG CAG
86406 GCA * 14 38/42 GCA GCA GCA GCA GCA GCA GCA GCC GCA ACA ACA GCA GCA ACA
87816 GCA * 8 23/24 GCA GCA GCA GCA GCA GCA ACA GCA
90793 ATG * 7 19/21 ATG ATG ATG CTG ACG ATG ATG
90815 TGA * 7 19/21 TGA TGA TGA TGA TGT TGA TGG
94127 GCA * 7 19/21 GCA CCA CCA GCA GCA GCA GCA
95916 CAT * 11 31/33 CAT CAT CAT CAT CAT CAT CAT GAT CAT CAT CAC
96113 AAC * 7 19/21 AAC AGC AAC AAC AAG AAC AAC
107198 ACG * 7 19/21 ACG GCG ATG ACG ACG ACG ACG
115747 GCT * 7 19/21 GCT GCT GTT GCT GTT GCT GCT
124689 TGG * 8 22/24 TGG TGG TGG TGG TGG TGG TGG TTC
134409 GTT * 11 31/33 GTT GTT GTT GTT GTT GTT GTT GTT GTT GTT GCA
137946 GAA * 7 19/21 GAA AAA GAA GAA GCA GAA GAA
158340 TGG * 8 22/24 TGG TGG TGG TGG TGG TGC TAG TGG
166808 CTG * 7 19/21 CTG CTA CTG TTG CTG CTG CTG
166846 TGC * 12 33/36 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TAC TTA
169609 AGA * 7 19/21 AGA AGA ACA AGA ACA AGA AGA
169980 AAG * 10 29/30 AAG AAG AAG AAC AAG AAG AAG AAG AAG AAG
170013 AGC * 7 20/21 AGC AGC AGC AGC AGC AGC AGT
170073 AGC * 15 42/45 AGC AGC AGC AGC AGC AGC AGC AGC AGC ATC ATC AGC AGC AGC AAC
170174 GCA * 8 22/24 GCA GCA GCA GCA GTT GCA GCA GCA
173482 CAT * 8 23/24 CAT CAT CAA CAT CAT CAT CAT CAT
174516 GAT * 7 20/21 GAT GAT GAT GAT GTT GAT GAT
180660 GAT * 7 19/21 GAT GAT GAT GAT GAT GAT CTT
200998 TGC * 15 41/45 TGC TGC TCA TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TTG
210457 ACC * 9 25/27 ACC ACT ACC ACC AAC ACC ACC ACC ACC
213290 CAA * 7 19/21 CAA CAA CAA CCA AAA CAA CAA
230912 CAG * 8 22/24 CAG CAG CAG CAG CAT CAC CAG CAG
230965 GGA * 7 19/21 GGA GGC GGA GGC GGA GGA GGA
231319 CAG * 7 20/21 CAG CAG CAG CGG CAG CAG CAG
233633 CAG * 11 30/33 CAG CAG CAA CAG CAG CAG CAG CAG CAG GAG AAG
235732 TGC * 7 19/21 TGC CGC TGC TAC TGC TGC TGC
236374 CAA * 15 41/45 CAA CAA CAA TAA CAA CAA TAA CAA CAA CAA CAA CAA CAA CAG CAG
247517 CAG * 7 19/21 CAG AAG CAG CAG CAC CAG CAG
266553 TTA * 7 19/21 TTA TTA TTA TTA TTA TTT TTT
284051 ACG * 7 21/21 ACG ACG ACG ACG ACG ACG ACG
291738 CCG * 8 22/24 CCG CCG CCG CCG CCA ACG CCG CCG
292420 GCC * 9 25/27 GCC GCC GCC GCC GCC ACC GCC CCC GCC
293807 TCC * 10 27/30 TCC TCC TCT TCC TCC TCC TCC TCC TCG TCT
302299 AAT * 11 30/33 AAT AAT AAT AAT AAT AAT AAT AAT AAT ATT CAC
309549 CAA * 17 46/51 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CTA CAA AAA GAA CAA GAA CGA
-----------------------------------------------------------------------------------------
Total sequence length......................... 311408
Total number of repeats detected.............. 60
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 0 1 0 0 0 0 0 0 0 0 0 0
AAG 1 0 1 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 2 2 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGA 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 3 2 0 1 0 0 0 0 0 0 0 0 0
ACG 2 2 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 2 2 0 0 0 0 0 0 0 0 0 0 0
TGG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 4 2 1 1 0 0 0 0 0 0 0 0 0
TCA 2 2 0 0 0 0 0 0 0 0 0 0 0
TCC 1 0 1 0 0 0 0 0 0 0 0 0 0
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 3 3 0 0 0 0 0 0 0 0 0 0 0
GTT 1 0 1 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 6 4 1 1 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 5 3 0 1 1 0 0 0 0 0 0 0 0
CAT 4 3 1 0 0 0 0 0 0 0 0 0 0
CAG 6 5 1 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTA 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 2 2 0 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 2
1 AAG + 1 AGA + 1 GAA + 0 CTT + 0 TTC + 0 TCT = 3
1 AAC + 0 ACA + 5 CAA + 1 GTT + 0 TTG + 0 TGT = 7
2 ATG + 2 TGA + 3 GAT + 4 CAT + 1 ATC + 2 TCA = 14
0 AGT + 0 GTA + 0 TAG + 0 ACT + 1 CTA + 0 TAC = 1
0 AGG + 1 GGA + 0 GAG + 0 CCT + 0 CTC + 1 TCC = 2
3 AGC + 6 GCA + 6 CAG + 2 GCT + 2 CTG + 4 TGC = 23
2 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 2
1 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 2 TGG = 4
0 GGC + 0 GCG + 0 CGG + 1 GCC + 1 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7290460|gb|AE003430.1|AE003430 Drosophila melanogaster genomic scaffold 142000013386054 section 14 of 35, complete sequence
Position Repeat Coverage Repeat
24426 GCA * 7 19/21 GCA GCA GAA GCA GCA GCA GGA
26425 GCA * 8 23/24 GCA GCA GCA GCA GCA ACA GCA GCA
28000 AAG * 7 19/21 AAG CAG AAG ACG AAG AAG AAG
28936 CAT * 7 19/21 CAT CAT CAT CAC CAC CAT CAT
31187 ACA * 7 19/21 ACA ACA ACA ACA ACA ACG ACG
44828 GTT * 7 19/21 GTT GTT GTT GTT GTG GTT TTT
47024 TTG * 7 19/21 TTG TTG TTG TTG CTG TTG TTA
47067 TGT * 9 25/27 TGT GGC TGT TGT TGT TGT TGT TGT TGT
55134 TAT * 14 38/42 TAT AAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TCA TAT TAC
85722 CAC * 11 30/33 CAC CAC CAC CAC CAC TAC CAT CAC CAC CTC CAC
168192 ATT * 8 22/24 ATT GTT ATT ATT ATT AGT ATT ATT
170458 GCA * 7 19/21 GCA GCA GGA GCA GCA GTA GCA
174456 AGG * 7 20/21 AGG AGG AGG AGG AGG AGG AGT
193831 TTA * 7 19/21 TTA ATA TTA TTA TTA TTG TTA
235388 CAG * 8 22/24 CAG CAG CAG CAG TAG CAG CAG CAA
251246 GTT * 8 22/24 GTT GTT GTT GTT GTT GTT TTT TTT
259435 GTT * 7 19/21 GTT ATT GTT GTT GCT GTT GTT
269872 TAT * 7 20/21 TAT TAT GAT TAT TAT TAT TAT
285523 CAC * 8 22/24 CAC CAC CAG CAC CAC TAC CAC CAC
292058 AGC * 7 20/21 AGC AAC AGC AGC AGC AGC AGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 294292
Total number of repeats detected.............. 20
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 2 1 0 1 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 3 3 0 0 0 0 0 0 0 0 0 0 0
GCA 3 3 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAC 2 1 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 1 ATT + 1 TTA + 2 TAT = 4
1 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 1
0 AAC + 1 ACA + 0 CAA + 3 GTT + 1 TTG + 1 TGT = 6
0 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 1
1 AGC + 3 GCA + 1 CAG + 0 GCT + 0 CTG + 0 TGC = 5
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 2 CAC + 0 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7290438|gb|AE003429.1|AE003429 Drosophila melanogaster genomic scaffold 142000013386054 section 13 of 35, complete sequence
Position Repeat Coverage Repeat
12928 CAG * 7 19/21 CAG CAG CAT CAG CAA CAG CAG
12954 GCA * 7 19/21 GCA GCA GCA TCA GCA GCA ACA
13135 CAG * 11 30/33 CAG CAG CAG CAG CAG CAG CAG CAG CAT CAC CAC
35364 GCT * 23 63/69 GCT GCT GCT GCT GCA GTT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GTT GTT GCT GCA GAT GCT
57808 ACA * 8 22/24 ACA GCA GCA ACA ACA ACA ACA ACA
59014 GCA * 8 22/24 GCA GCA ACA ACA GCA GCA GCA GCA
59042 CAG * 10 27/30 CAG CAG CAG CAA CAA CAG CAG CAG CAG CAA
59075 CAG * 7 19/21 CAG CAG CAA CAA CAG CAG CAG
59099 CAG * 8 22/24 CAG CAG CAG CAG CAG CAA CAC CAG
59285 CAG * 7 19/21 CAG CAG CAA CAG CAA CAG CAG
88769 TTG * 10 27/30 TTG TTG TGG TTG TTG TTG TTC TTG TTG CTG
93447 GAA * 7 19/21 GAA AAA GAA CAA GAA GAA GAA
109337 CTG * 12 34/36 CTG CTG ATG CTG CTG CTG CTG GTG CTG CTG CTG CTG
109376 CTG * 10 27/30 CTG CTG CTG CTG CTG ATG TTG CTG CTG ATG
109411 GCT * 7 19/21 GCT GAT GCT GCT GCT GAT GCT
109967 CTG * 9 25/27 CTG CTG CTG CTG CTG CTG CGG CTG CTT
114323 TGC * 17 46/51 TGC TGC TGC TGC TGA TGC TGC TGC TGT TGC TGC TGC TGC TGC TGA TGA TGA
156995 AGC * 8 22/24 AGC AAA AGC AGC AGC AGC AGC AGC
163146 TGC * 10 28/30 TGC TGT TGC TGC TGC TGC TGG TGC TGC TGC
187105 CAT * 8 22/24 CAT CAT CAT CAT CAT CAT CAT CGC
210757 GAA * 8 22/24 GAA GAA GAA GAA GAA GAA GAG GAG
216929 GTC * 12 33/36 GTC CTT GTC GTC GTC GTC GTC GTC GTC GTC ATC GTC
219605 ACA * 7 19/21 ACA ACA GCA ACA ACA ACA ACT
229612 GGT * 7 19/21 GGT GGT GGT GGT GGT GAT GGG
231138 AGA * 9 25/27 AGA AGA AGA AGA AGA AGA TGA TGA AGA
232139 GTC * 8 23/24 GTC GTC CTC GTC GTC GTC GTC GTC
234607 ATG * 8 23/24 ATG ATG ATG ATG ATG ATA ATG ATG
242990 TAC * 8 22/24 TAC TAC TAC TAC TAC TAC TAC TTT
250955 GTT * 10 27/30 GTT GCT GTT GTT GTT GTT GTT GTT GCT GAT
280977 CAA * 7 19/21 CAA CAA CAA CAA CAA TAA TAA
281002 AAC * 11 30/33 AAC AAC AAC AAC AAC AAC AAT AAC AAC AGC AAT
281731 CAG * 7 19/21 CAG CAG CAG CAG CAG CAC CAA
284042 TGC * 11 31/33 TGC TGC TGC TGC TGC TGC TGC TGC TAC TGC TTC
286122 CAG * 8 22/24 CAG CAA CAA CAG CAG CAG CAG CAG
286149 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CAA
286176 CAG * 7 19/21 CAG CAG CAG CAA CAG CAG CAA
286284 CAG * 10 28/30 CAG CAA CAG CAA CAG CAG CAG CAG CAG CAG
286923 CAG * 7 19/21 CAG CAA CAA CAG CAG CAG CAG
286968 CAG * 12 33/36 CAG CAG CAG CAG CAG CAG CAG CAA CAA CAA CAG CAG
291023 CAG * 8 23/24 CAG CAG CAG TAG CAG CAG CAG CAG
-----------------------------------------------------------------------------------------
Total sequence length......................... 297405
Total number of repeats detected.............. 40
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 0 1 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGA 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 2 2 0 0 0 0 0 0 0 0 0 0 0
TAC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 3 0 2 0 1 0 0 0 0 0 0 0 0
GAA 2 2 0 0 0 0 0 0 0 0 0 0 0
GTT 1 0 1 0 0 0 0 0 0 0 0 0 0
GTC 2 1 1 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
GCT 2 1 0 0 0 0 1 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 14 10 4 0 0 0 0 0 0 0 0 0 0
CTG 3 1 2 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 1 AGA + 2 GAA + 0 CTT + 0 TTC + 0 TCT = 3
1 AAC + 2 ACA + 1 CAA + 1 GTT + 1 TTG + 0 TGT = 6
1 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 1 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 2 GCA + 14 CAG + 2 GCT + 3 CTG + 3 TGC = 25
0 ACG + 0 CGA + 0 GAC + 0 CGT + 2 GTC + 0 TCG = 2
0 ACC + 0 CCA + 0 CAC + 1 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7290425|gb|AE003428.1|AE003428 Drosophila melanogaster genomic scaffold 142000013386054 section 12 of 35, complete sequence
Position Repeat Coverage Repeat
8814 CAA * 7 19/21 CAA CAA CAA CAA CAA TTA CAA
9110 GCA * 7 19/21 GCA GCA ACA GCA GCA GCA GAA
40964 TAA * 7 19/21 TAA TAA TGA TAA TCA TAA TAA
42142 CAT * 7 19/21 CAT CGT CAT CAT CAT CTT CAT
46129 AGC * 7 19/21 AGC AGC AAC AAC AGC AGC AGC
46185 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CAA
87784 ATA * 12 33/36 ATA ATA ATA ACA ATA ATA ATA ATA ATT ATG ATA ATA
92403 ATA * 10 27/30 ATA ATA ATA ACA ATA ATA ATA ATA ATA CAA
92433 TAA * 10 27/30 TAA TAA TAA TAT TAA TAA TAA TTA TAA TAT
95026 ATA * 19 52/57 ATA ATA ATA ACA ATA ATA ATA ATA ATT ATG ATA ATA ATA TTA ATA ATA ATT ATA ATA
106361 ATA * 10 27/30 ATA ATA ATA ACA ATA ATA ATA ATA ATA CAA
106391 TAA * 10 27/30 TAA TAA TAA TAT TAA TAA TAA TTA TAA TAT
108981 ATA * 19 52/57 ATA ATA ATA ACA ATA ATA ATA ATA ATT ATG ATA ATA ATA TTA ATA ATA ATT ATA ATA
115808 ATA * 10 27/30 ATA ATA ATA ACA ATA ATA ATA ATA ATA CAA
115838 TAA * 10 27/30 TAA TAA TAA TAT TAA TAA TAA TTA TAA TAT
121118 ATA * 19 52/57 ATA ATA ATA ACA ATA ATA ATA ATA ATT ATG ATA ATA ATA TTA ATA ATA ATT ATA ATA
136686 GAT * 10 27/30 GAT GAT GAT GAT GAT GAT GAT GAC GAT GGC
161908 CAT * 10 27/30 CAT CAT CAT CAT CAT CAT CAT CAG CAG CAG
172028 AGT * 10 28/30 AGT AAT AGT AGT AGT AGT AGT AGT AGT AGG
181018 TTA * 7 19/21 TTA TTA CTA TTA TTA TTA TTT
182812 GTT * 8 22/24 GTT GTT GTT GTT GAT GTT CTT GTT
194006 AAC * 8 22/24 AAC AAC AAC AAC AAC AAC AGC ATC
209600 TTG * 7 19/21 TTG TTG CTG TTG TTG TTG TTT
212166 CAA * 10 27/30 CAA CAA CAA CAA CAA CAA CAA CAA TAC CCA
214331 TCA * 7 19/21 TCA TCC TCC TCA TCA TCA TCA
214813 AAC * 11 31/33 AAC GAA AAC AAC AAC AAC AAC AAC AAC AAC AAC
215271 CAA * 9 25/27 CAA CCA CAA CAA CAA CAA CAA CAA CAG
219037 TAA * 11 30/33 TAA TAA TAA TAA TAA TTA TCA TAA TAA TAA TAG
229037 GTT * 7 19/21 GTT GTT ATT GTT ATT GTT GTT
238052 CAA * 7 19/21 CAA CAA CAA CAA AAA CAA CCA
240431 TTG * 7 19/21 TTG TTG TTG CTG TTG TTG TTA
247260 TGC * 7 19/21 TGC TGC TGT TGC TGC TGT TGC
247702 GTC * 9 26/27 GTC GTC GTC GTC GTC GTC GTC GTC ATC
256894 AAC * 7 19/21 AAC AAC AAC GAC AAC AAC AAG
260525 TGT * 8 24/24 TGT TGT TGT TGT TGT TGT TGT TGT
260759 TTG * 7 19/21 TTG CTG TTG TTG CTG TTG TTG
260844 AGC * 12 33/36 AGC AGC AGC ACC AGC AGC AGC AGC AGC AGC AGA GGC
261696 GTG * 8 22/24 GTG GTG GTG GTG GTG GTG GTG AAG
264673 TTG * 8 22/24 TTG TTG TTG TTG TTG TTG TTT TTT
267733 ATT * 88 238/264 ATT AAT TTT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT GTT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT GTT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT GTT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AAT TAT TAT TAT TAA TAT AAT AAT ACC ATT ATT ATT ATT ATT ATT ATC ATT ATT ATT ATT ATT ATT ATT ATG CAG
268150 CAG * 7 19/21 CAG CAA CAG CAG CAG CAA CAG
275829 CAA * 12 34/36 CAA CAA CAA CAT CAA CAA CAA CAA CAA CAA CAA CAT
275877 CAA * 10 27/30 CAA CAA CAA CAA CAA CAA CAA CAG CAA CTT
295082 GCA * 8 22/24 GCA GCA GCA GCA GCA ACA GGA GCA
296133 CAG * 7 19/21 CAG CAA CAG CAG CAG CAG CAA
296325 CAG * 7 19/21 CAG CAG CAA CAA CAG CAG CAG
296486 ACC * 7 19/21 ACC ACC ACT GCC ACC ACC ACC
297120 CAG * 7 19/21 CAG CAG CAG CAG CAA CAG CAA
299164 ATT * 61 166/183 ATT AAT TTT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT GTT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT GTT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT GGT ATT ATT ATT ATT ANN NNN NNN NNN
-----------------------------------------------------------------------------------------
Total sequence length......................... 301465
Total number of repeats detected.............. 49
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 3 2 1 0 0 0 0 0 0 0 0 0 0
ATA 7 0 4 0 0 3 0 0 0 0 0 0 0
ATT 2 0 0 0 0 0 0 0 0 0 0 0 2
AGT 1 0 1 0 0 0 0 0 0 0 0 0 0
AGC 2 1 1 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 5 1 4 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 4 4 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 0 1 0 0 0 0 0 0 0 0 0 0
GTT 2 2 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 6 3 3 0 0 0 0 0 0 0 0 0 0
CAT 2 1 1 0 0 0 0 0 0 0 0 0 0
CAG 5 5 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 7 ATA + 5 TAA + 2 ATT + 1 TTA + 0 TAT = 15
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
3 AAC + 0 ACA + 6 CAA + 2 GTT + 4 TTG + 1 TGT = 16
0 ATG + 0 TGA + 1 GAT + 2 CAT + 0 ATC + 1 TCA = 4
1 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
2 AGC + 2 GCA + 5 CAG + 0 GCT + 0 CTG + 1 TGC = 10
0 ACG + 0 CGA + 0 GAC + 0 CGT + 1 GTC + 0 TCG = 1
1 ACC + 0 CCA + 0 CAC + 0 GGT + 1 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7290398|gb|AE003427.1|AE003427 Drosophila melanogaster genomic scaffold 142000013386054 section 11 of 35, complete sequence
Position Repeat Coverage Repeat
3503 GCA * 13 36/39 GCA GCA GCA GCA GCA GCA GCA GCA GCA GCT GCA GCA ACC
13879 AGC * 11 30/33 AGC AGT AGC AGC AGC AAC AGC AGC AGC AAC AGC
23692 TTA * 8 23/24 TTA TTA TTA TTA TTA TTA TTA TTT
37824 CAC * 7 19/21 CAC CAC CAC CAC CAC CAC AAT
38093 CAG * 8 23/24 CAG CAG CAG CAG CAG CAG CAA CAG
38309 AGC * 7 19/21 AGC ACC AGT AGC AGC AGC AGC
45748 AGT * 7 20/21 AGT ATT AGT AGT AGT AGT AGT
47874 AAT * 7 20/21 AAT AAT AAT AAT AAT AAT AAA
48939 GCA * 8 23/24 GCA GCA GCA GCA GCA GCA GCA ACA
48966 ACA * 7 19/21 ACA ACA ACA ACA ACA ACA GCC
69783 CAG * 11 30/33 CAG CAG CAG CAG CAG CAG CAG CAG CAG CTT CAT
70274 CAA * 7 20/21 CAA CAA CAA CAA CAA CAA CGA
70345 TTG * 7 20/21 TTG TTG TTG GTG TTG TTG TTG
109623 CAG * 11 30/33 CAG CAG CAG CAA CAG CAG CAA CAG CAG CAA CAG
112842 AAT * 7 19/21 AAT AAA AAT AAA AAT AAT AAT
118694 AAC * 8 22/24 AAC AAC AAC AAT AAC AAC AAC AAA
118748 AAC * 10 28/30 AAC AAC AAC AAC AAC AAC AAC AAC AAC AGG
133957 CAA * 11 31/33 CAA CAA CAA CAA CAG CAA CAA CAA AAA CAA CAA
135487 ACT * 11 30/33 ACT ACT ACA ACT ACA ACT ACT ACT ACT ACT ACG
140002 TCT * 7 19/21 TCT GCT TCT TCT TTT TCT TCT
163705 GAT * 7 19/21 GAT GAT TAT GAT TAT GAT GAT
165275 TAT * 7 19/21 TAT TCT TCT TAT TAT TAT TAT
207390 ATA * 15 41/45 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA GTA CAC
228641 TTG * 10 28/30 TTG TTG TTA CTG TTG TTG TTG TTG TTG TTG
231140 CTG * 8 22/24 CTG TTG CGG CTG CTG CTG CTG CTG
231449 TGC * 15 41/45 TGC TGT TGC TGC TGC TGC TGT TGC TGC TGA TGC TGC TGC TTC TGC
232344 AAT * 8 22/24 AAT AAT AAT AAT CAT AAT AAT GAT
232861 TTG * 7 19/21 TTG CTG TTG TTG TTG TTG CTG
233866 TGC * 8 22/24 TGC TGC CGC TGC TGT TGC TGC TGC
268547 GCA * 7 19/21 GCA ACA GCA GCA GCA GCA TCA
269303 CAG * 7 19/21 CAG CAG CAG TAG CAG CAG TAG
271608 GTT * 8 22/24 GTT GTT GTT GTT GTT GTT GTG GTG
-----------------------------------------------------------------------------------------
Total sequence length......................... 310909
Total number of repeats detected.............. 32
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 3 3 0 0 0 0 0 0 0 0 0 0 0
AAC 2 1 1 0 0 0 0 0 0 0 0 0 0
ATA 1 0 0 1 0 0 0 0 0 0 0 0 0
AGT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 1 1 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
ACT 1 0 1 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 3 2 1 0 0 0 0 0 0 0 0 0 0
TGC 2 1 0 1 0 0 0 0 0 0 0 0 0
TCT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 3 2 0 1 0 0 0 0 0 0 0 0 0
CAA 2 1 1 0 0 0 0 0 0 0 0 0 0
CAG 4 2 2 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
3 AAT + 1 ATA + 0 TAA + 0 ATT + 1 TTA + 1 TAT = 6
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 1 TCT = 1
2 AAC + 1 ACA + 2 CAA + 1 GTT + 3 TTG + 0 TGT = 9
0 ATG + 0 TGA + 1 GAT + 0 CAT + 0 ATC + 0 TCA = 1
1 AGT + 0 GTA + 0 TAG + 1 ACT + 0 CTA + 0 TAC = 2
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
2 AGC + 3 GCA + 4 CAG + 0 GCT + 1 CTG + 2 TGC = 12
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7290382|gb|AE003426.1|AE003426 Drosophila melanogaster genomic scaffold 142000013386054 section 10 of 35, complete sequence
Position Repeat Coverage Repeat
3782 TAA * 7 19/21 TAA TAA TAC TAA TAA TAA AAA
10947 TGG * 7 19/21 TGG CAG TGG TGG TGG TGG TGG
11116 GGT * 7 19/21 GGT GGT GGT GGT GGT GGC GGC
13098 AGG * 8 23/24 AGG AGG AGG AGG AGG AGG AGG AGC
36108 TAT * 7 19/21 TAT TAA TAT TAT TAT TAT GAT
37130 GAT * 7 20/21 GAT GAT GAT GAT GAT GAC GAT
54727 TGA * 8 22/24 TGA TGA TGA TGA TGC TGA TGC TGA
68629 TGC * 11 30/33 TGC TGC TGC CGC TGC TGC TGC TGC TGC TGT CGC
82459 GCT * 7 19/21 GCT GCT GCT GCT GTT GCT TCT
96931 CAG * 17 47/51 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAA CTT CAG CAG CAC
98020 CAG * 9 25/27 CAG CAG CCG CAG CAG CAG CAG CAT CAG
100285 TTA * 7 20/21 TTA TTA TTA TTA TTA TTA TTT
105058 TGC * 7 19/21 TGC TGC TGC TGT TGG TGC TGC
117092 CAC * 8 22/24 CAC CAC CAC CAC CAC CAC CAA CAA
123128 GGC * 7 19/21 GGC GGC GGC GGC GGC GGT GGA
142408 TTG * 8 22/24 TTG GTG TTG TTG TTG TTG TTG TTA
158781 ACA * 12 33/36 ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA AAA GCC
165304 ATT * 8 23/24 ATT ATT ATT ATT ATT ATT ATT TTT
170366 TAA * 7 19/21 TAA TAA CAA TAA CAA TAA TAA
181962 ACA * 8 22/24 ACA ACA ACA ACA ACA ACA ACG AGA
186210 CCT * 7 19/21 CCT CCT CCT GCT CCT GCT CCT
188438 CTC * 8 22/24 CTC ATC CTC CTC CTC CTC ATC CTC
200224 ATA * 10 27/30 ATA ATA ATA ATA ATA ATA ATA GTA ATG ATC
213897 AGC * 8 22/24 AGC AGC AGC AGC AGC AGC ATC GGC
220945 AAT * 7 19/21 AAT AAT AAA AAT AAT AAT AAA
229294 GGT * 7 19/21 GGT GGT GGT GGT GGT GTT GGC
229438 CAG * 12 33/36 CAG CAA CAG CAG CAG CAG CAG CAA CAG CAA CAG CAG
229480 CAG * 17 47/51 CAG CAG CAG CAA CAG CAG CAG CAA CAG CAG CAG CAG CAA CAG CAG CAG CAA
230757 TTA * 10 28/30 TTA TTA TTA TTA TTA TTA TTA TGA CTA TTA
246736 ATA * 12 33/36 ATA ATA ATA ATA ATA ATA AAA ATA ACA ATA ACA ATA
263575 TTG * 7 19/21 TTG TTG TTG TTG TTA TTT TTG
299590 CTG * 8 22/24 CTG CTG CTA CTG CTG CTA CTG CTG
-----------------------------------------------------------------------------------------
Total sequence length......................... 300193
Total number of repeats detected.............. 32
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 2 0 2 0 0 0 0 0 0 0 0 0 0
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 2 1 1 0 0 0 0 0 0 0 0 0 0
TAA 2 2 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 2 1 1 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 1 1 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 2 2 0 0 0 0 0 0 0 0 0 0 0
GGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 4 1 1 0 2 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 2 ATA + 2 TAA + 1 ATT + 2 TTA + 1 TAT = 9
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 2 ACA + 0 CAA + 0 GTT + 2 TTG + 0 TGT = 4
0 ATG + 1 TGA + 1 GAT + 0 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 0 GAG + 1 CCT + 1 CTC + 0 TCC = 3
1 AGC + 0 GCA + 4 CAG + 1 GCT + 1 CTG + 2 TGC = 9
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 1 CAC + 2 GGT + 0 GTG + 1 TGG = 4
1 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7290341|gb|AE003425.1|AE003425 Drosophila melanogaster genomic scaffold 142000013386054 section 9 of 35, complete sequence
Position Repeat Coverage Repeat
13935 AAT * 7 19/21 AAT AAT AAT AAT AAT ACT AGT
14586 GAG * 10 28/30 GAG GAG GAG GAG GAG GAG GAG GAG GAC GAC
28243 TGG * 7 19/21 TGG CGG TGC TGG TGG TGG TGG
29407 ACA * 7 19/21 ACA CCC ACA ACA ACA ACA ACA
29540 CAG * 15 41/45 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAT CAA CCG CAA
53936 AGC * 8 22/24 AGC AGC AGC AGC AGC AGC TAC AGC
70035 TAA * 7 19/21 TAA TAA CAA TAA TAA TTA TAA
73870 GAT * 9 25/27 GAT GCT GAT GAT GAT GAT GAT GAT AAT
79943 CAG * 12 33/36 CAG CAG CAG CAG CAG CAG CAG CAG CCG TTG CAG CAG
86301 CTC * 7 19/21 CTC CTT TTC CTC CTC CTC CTC
91887 TTG * 7 20/21 TTG TTG TTG TTA TTG TTG TTG
117144 TGC * 7 19/21 TGC TAC TGC TGC TGC TGC TGA
144096 TTA * 11 30/33 TTA TTA TTA TTA TTA TTT TTA TTA TTT TTA TTT
163808 GAT * 14 40/42 GAT GAT GAC GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAC
170028 TGG * 7 19/21 TGG TGG TGG TGG TGG TGC TGC
176451 CAA * 7 19/21 CAA AAA CAA CAA CAA CAA CAC
192927 TGC * 7 19/21 TGC TGT TGC TGC TGT TGC TGC
194125 TTG * 13 36/39 TTG TTG TTG TTG TTG TTA TTG CTG TTG TTA TTG TTG TTG
200360 TAT * 18 50/54 TAT TAT AAT TAT TAT TAA TAT TAT TAT TAT TAT TGT TAT TAT TAT TGT TAT TAT
207324 TAT * 14 38/42 TAT TAT AAT TAT TAT TAA TAT TAT TAT TAT TAT TGT TAT TAG
209528 TAT * 18 50/54 TAT TAT AAT TAT TAT TAA TAT TAT TAT TAT TAT TGT TAT TAT TAT TGT TAT TAT
210063 ACG * 7 20/21 ACG ACG ACG ACG ACG ACG AAG
226457 CTG * 15 41/45 CTG CTG CTG CTG CTG CTC CTG CTG CTG CTG CTA CTG CAG TTG CTG
235848 ATA * 7 19/21 ATA ATA CTA ATA CTA ATA ATA
239732 TTG * 8 22/24 TTG TTG TTG TTG TTG TTG TTG CTT
239978 TTG * 11 30/33 TTG TTG TTG TTG TTG CTG TTG TTG TTG TTG AGG
240018 TGT * 7 20/21 TGT TGT TGT TGT TGT TGT TGC
240073 GTT * 8 22/24 GTT GTT GTT GTT GTT GTT GCG GTT
240200 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC TGC GGA
240325 CTG * 7 19/21 CTG CTG CTG CTG CTC CTG TTG
242989 CGT * 7 19/21 CGT TGT CGT CGT CGT AGT CGT
243047 GTG * 9 25/27 GTG GTG GTG GTG GTT GAG GTG GTG GTG
261798 AAT * 11 30/33 AAT AAT ATT AAT ATT AAT AAT AAT AAT AAT AAA
265007 GTG * 7 19/21 GTG GTG GTG GTG GCG GTG GGG
269767 CTG * 9 25/27 CTG CTC CTG CTG CTG CTG CTG CTG CTC
281467 ACC * 7 19/21 ACC ACT GCC ACC ACC ACC ACC
-----------------------------------------------------------------------------------------
Total sequence length......................... 300205
Total number of repeats detected.............. 36
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 2 1 1 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
ACG 1 1 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 3 0 0 1 2 0 0 0 0 0 0 0 0
TTA 1 0 1 0 0 0 0 0 0 0 0 0 0
TTG 4 2 1 1 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 3 3 0 0 0 0 0 0 0 0 0 0 0
GAT 2 1 0 1 0 0 0 0 0 0 0 0 0
GAG 1 0 1 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 0 1 1 0 0 0 0 0 0 0 0 0
CTG 3 2 0 1 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CGT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
2 AAT + 1 ATA + 1 TAA + 0 ATT + 1 TTA + 3 TAT = 8
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 1 CAA + 1 GTT + 4 TTG + 1 TGT = 8
0 ATG + 0 TGA + 2 GAT + 0 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 0 CCT + 1 CTC + 0 TCC = 2
1 AGC + 0 GCA + 2 CAG + 0 GCT + 3 CTG + 3 TGC = 9
1 ACG + 0 CGA + 0 GAC + 1 CGT + 0 GTC + 0 TCG = 2
1 ACC + 0 CCA + 0 CAC + 0 GGT + 2 GTG + 2 TGG = 5
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7290316|gb|AE003424.1|AE003424 Drosophila melanogaster genomic scaffold 142000013386054 section 8 of 35, complete sequence
Position Repeat Coverage Repeat
11327 TCG * 7 19/21 TCG TGG TCG TCG TCG TCT TCG
12248 GAT * 7 19/21 GAT GAA GAT GAA GAT GAT GAT
25760 CTG * 11 30/33 CTG CTG CTG CTG CTG CTG ATG CTG CTG GTG GTG
41782 AGC * 7 19/21 AGC AGC AAC AAC AGC AGC AGC
41838 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CAA
67942 ATT * 7 19/21 ATT ATT ATT ATT TTT ATT AGT
71426 TGC * 7 19/21 TGC TGC TGC TGC TGT TGC TGT
71627 TGC * 7 19/21 TGC TGC TGC TGC AGC TGC TGA
71651 TGC * 7 19/21 TGC TGC TGC TGC TGT TGC TGT
88367 GTT * 8 22/24 GTT GTT GTT GTT GTT GTT GTG GTG
92176 AGC * 8 22/24 AGC AGC AGC AGC AAC AGC AGC AGG
92289 GCG * 7 19/21 GCG GTG GCT GCG GCG GCG GCG
92800 GCA * 7 19/21 GCA TCA CCA GCA GCA GCA GCA
106122 TGG * 7 19/21 TGG TGG TGG AGG TGG AGG TGG
106210 CTC * 10 28/30 CTC CTC CTC CTC CTC CTT CTT CTC CTC CTC
141323 TTA * 9 25/27 TTA TTA TTA TTG TTA TTA TTA TTA TCA
152224 CCT * 7 20/21 CCT CCT CCT CCT CCT CCT CCC
170891 GGA * 8 23/24 GGA GGA GGT GGA GGA GGA GGA GGA
202999 AGA * 7 19/21 AGA AGA AGA AGA AGA AGG AAA
204790 GTC * 9 25/27 GTC GTC ACC GTC GTC GTC GTC GTC GTC
207295 TTG * 7 19/21 TTG TAG TTG TTC TTG TTG TTG
214977 TGC * 9 25/27 TGC TGC TGC TGC TGC TGC TGC TGC AAC
220908 ACA * 7 19/21 ACA ACA TCA ACA ACA ACA ACG
232578 CAA * 7 19/21 CAA TAA TAA CAA CAA CAA CAA
266717 CAC * 8 22/24 CAC CAC CAG CAC CAC CAC CAG CAC
279123 TTG * 9 26/27 TTG TTG TTG TTG TTG TTG TTG TTG TGG
-----------------------------------------------------------------------------------------
Total sequence length......................... 289090
Total number of repeats detected.............. 26
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGA 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 2 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 4 4 0 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTC 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 0 1 0 0 0 0 0 0 0 0 0 0
CTC 1 0 1 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 1 ATT + 1 TTA + 0 TAT = 2
0 AAG + 1 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 1
0 AAC + 1 ACA + 1 CAA + 1 GTT + 2 TTG + 0 TGT = 5
0 ATG + 0 TGA + 1 GAT + 0 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 0 GAG + 1 CCT + 1 CTC + 0 TCC = 3
2 AGC + 1 GCA + 1 CAG + 0 GCT + 1 CTG + 4 TGC = 9
0 ACG + 0 CGA + 0 GAC + 0 CGT + 1 GTC + 1 TCG = 2
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 1 TGG = 2
0 GGC + 1 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7290252|gb|AE003423.1|AE003423 Drosophila melanogaster genomic scaffold 142000013386054 section 7 of 35, complete sequence
Position Repeat Coverage Repeat
4159 AAT * 7 20/21 AAT AAT AAT AAT AAT AAC AAT
36628 ACA * 7 19/21 ACA ACA ACA ACA ATA TCA ACA
44860 AGC * 7 19/21 AGC AGC ACC ACC AGC AGC AGC
51929 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC TGT TGA
52454 TGC * 7 19/21 TGC TGC TGC TGC TGT TGC TGG
53310 CTG * 8 22/24 CTG CTG CTG CTG CTG TTG CTG CTT
53895 GCT * 7 19/21 GCT GTT GCT GTT GCT GCT GCT
62367 TGC * 7 19/21 TGC TGC TGC TGC TGT TGC TGG
76657 CAC * 9 25/27 CAC CAC CAC CAC CAT CAC CAC CAC CAG
88936 TCC * 8 22/24 TCC TCC TCC TCG TCC TCC TCC TCT
98057 TAA * 7 20/21 TAA TAA TAA TAC TAA TAA TAA
120262 GCT * 8 22/24 GCT GCT GCT GCT GCT GCT GCC GCC
132206 CAG * 7 19/21 CAG CAG GAG AAG CAG CAG CAG
142158 AGC * 8 22/24 AGC AGC GGC AGC AGC AGC AGC AAC
157667 ACC * 7 19/21 ACC ACC ACG AGC ACC ACC ACC
158770 GCA * 7 19/21 GCA GCG GCA GCA GAA GCA GCA
220844 GCA * 10 28/30 GCA GTA GCA ACA GCA GCA GCA GCA GCA GCA
222347 TTG * 7 19/21 TTG TTT TTG TTG TTG CTG TTG
224353 TGA * 7 20/21 TGA TAA TGA TGA TGA TGA TGA
227594 AAC * 10 27/30 AAC AAC AAC AAC AAC GAC AAC AAC AAA AGC
231940 CAA * 7 19/21 CAA CAA CTA CAA CAA CAA CGA
234003 TGT * 8 22/24 TGT TAT TGT TCT TGT TGT TGT TGT
253852 GTT * 10 27/30 GTT GTT GTT GCT GTT GTT GTT GTT GTT GGG
274676 GCA * 8 22/24 GCA GCA GCA GTG GCA GCA GCA GCA
-----------------------------------------------------------------------------------------
Total sequence length......................... 291976
Total number of repeats detected.............. 24
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 1 0 1 0 0 0 0 0 0 0 0 0 0
AGC 2 2 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 3 3 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 3 2 1 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 1 TAA + 0 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 1 ACA + 1 CAA + 1 GTT + 1 TTG + 1 TGT = 6
0 ATG + 1 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 1 TCC = 1
2 AGC + 3 GCA + 1 CAG + 2 GCT + 1 CTG + 3 TGC = 12
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
1 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7290202|gb|AE003422.1|AE003422 Drosophila melanogaster genomic scaffold 142000013386054 section 6 of 35, complete sequence
Position Repeat Coverage Repeat
18896 ATA * 7 20/21 ATA ATA ATT ATA ATA ATA ATA
28867 TCG * 11 32/33 TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG GCG
54234 CTC * 7 19/21 CTC ATC ATC CTC CTC CTC CTC
56136 TCC * 7 20/21 TCC TCC TCC TTC TCC TCC TCC
61048 CAT * 7 21/21 CAT CAT CAT CAT CAT CAT CAT
72541 AAT * 11 30/33 AAT AAT AAT AAT AAT AAT AAT AAT AAT TAC CAT
73412 GTT * 8 23/24 GTT GTT GTT GTT GTT GTT GTT CTT
75637 GAT * 7 20/21 GAT GAT AAT GAT GAT GAT GAT
109656 CAG * 7 19/21 CAG CAG CAC CAG CAA CAG CAG
116079 AAT * 7 19/21 AAT TAT GAT AAT AAT AAT AAT
120600 TGC * 7 19/21 TGC AGT TGC TGC TGC TGC TGC
121434 TGC * 7 20/21 TGC TGC TGC TGC TGC TGC TGT
122965 GCT * 7 19/21 GCT GCT GAA GCT GCT GCT GCT
150608 TAT * 9 25/27 TAT TAT TAT TAT TAT TAT TAT TGA TAT
151700 GAG * 9 25/27 GAG ATG GAG GAG GAG GAG GAG GAG GAG
177341 AGC * 7 20/21 AGC AGC AGC AGC AGC AGA AGC
182016 TGT * 12 33/36 TGT GGT TGT TGT TGT TGT TGT TGT TGT TGT TGC AGT
182214 AAC * 7 19/21 AAC AAC AAC AAC AAT AAA AAC
210620 TTG * 7 19/21 TTG CTG TTC TTG TTG TTG TTG
210647 GTT * 7 19/21 GTT TTT GTT GTT GCT GTT GTT
216696 GCT * 7 19/21 GCT GCT GCT GCT GCC ACT GCT
221813 GTT * 7 19/21 GTT GTT GTT GTT GCT GTT ATT
224356 AAC * 7 20/21 AAC GAC AAC AAC AAC AAC AAC
224728 GCA * 7 21/21 GCA GCA GCA GCA GCA GCA GCA
224937 CTG * 9 25/27 CTG CTG CTG CTG TTG CTG CTG CGG CTG
228099 AAC * 7 19/21 AAC AAC ACC AAC AAC AAC AAT
228232 ACC * 7 19/21 ACC ACC ACC ACC ACC ATC ACT
228567 AAT * 8 22/24 AAT AAT AAT AAT AAC AAT AAT AAC
229209 CAA * 10 27/30 CAA CAA TAA AAA CAA CAA CAA CAA CAA CGA
232556 CAG * 7 19/21 CAG CAG CAG CAG CAG CAG TGG
233103 GCA * 7 19/21 GCA GCA GCA GCA GCA GCG GCG
233526 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAG GCG
233559 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CAA
233685 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CAA
233727 CAG * 7 19/21 CAG CAA CAG CAA CAG CAG CAG
234288 CAG * 7 19/21 CAG CAG CAG CAA CAA CAG CAG
234311 GCA * 10 27/30 GCA GCA GCA ACA GCA ACA GCA GCA GCA ACA
235312 CAG * 7 19/21 CAG CAG CAG CAG CAG CAG GCG
235338 GCA * 11 30/33 GCA GCA GCA GCA CCA GCA ACA GCA GCA GCA TCA
235564 CAG * 7 20/21 CAG CAG CAA CAG CAG CAG CAG
235696 CAG * 10 29/30 CAG CAG CAG CAG CAG CAG CAG CAA CAG CAG
235755 GCA * 8 23/24 GCA CCA GCA GCA GCA GCA GCA GCA
237467 CAA * 12 33/36 CAA CAA CAA CAA CAA CAA CAG CAG CAA CAA CCA CAA
237707 CAG * 18 50/54 CAG CAG CAG CAG GAG CAG CAG CAG CAA CAG CAG CAG CAG CAG CAG CAG CAA CAA
238223 CAG * 8 22/24 CAG GAG CAG CAG CAG GAG CAG CAG
238286 CAT * 15 41/45 CAT CTT CAT CAT CAT CAT CAT CAT CAT CAT TAT CAT CAT CAT CGA
238562 CAA * 11 30/33 CAA CAG CAA CAA CAG CAA CAA CAA CAA CAA CAC
256750 AGC * 7 19/21 AGC AGC AGC AGC ACC AGC AGA
259865 TTA * 7 20/21 TTA TTA ATA TTA TTA TTA TTA
264044 AGC * 8 22/24 AGC GAC AGC AGC AGC AGC AGC AGC
273632 ATA * 7 19/21 ATA TCA ATA ATA ATA ATA ATA
277678 TGC * 10 28/30 TGC TGC TGC AGC TGC TGC TGC TGC TGC TGT
291407 CTG * 8 22/24 CTG CTG CAG CTG CTG CAG CTG CTG
299146 GTG * 7 20/21 GTG GTG GTG ATG GTG GTG GTG
-----------------------------------------------------------------------------------------
Total sequence length......................... 300739
Total number of repeats detected.............. 54
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 3 2 1 0 0 0 0 0 0 0 0 0 0
AAC 3 3 0 0 0 0 0 0 0 0 0 0 0
ATA 2 2 0 0 0 0 0 0 0 0 0 0 0
AGC 3 3 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 3 2 1 0 0 0 0 0 0 0 0 0 0
TCG 1 0 1 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 3 3 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 5 3 2 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 3 0 3 0 0 0 0 0 0 0 0 0 0
CAT 2 1 0 1 0 0 0 0 0 0 0 0 0
CAG 12 10 1 0 1 0 0 0 0 0 0 0 0
CTG 2 2 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
3 AAT + 2 ATA + 0 TAA + 0 ATT + 1 TTA + 1 TAT = 7
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
3 AAC + 0 ACA + 3 CAA + 3 GTT + 1 TTG + 1 TGT = 11
0 ATG + 0 TGA + 1 GAT + 2 CAT + 0 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 0 CCT + 1 CTC + 1 TCC = 3
3 AGC + 5 GCA + 12 CAG + 2 GCT + 2 CTG + 3 TGC = 27
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 1 TCG = 1
1 ACC + 0 CCA + 0 CAC + 0 GGT + 1 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7290163|gb|AE003421.1|AE003421 Drosophila melanogaster genomic scaffold 142000013386054 section 5 of 35, complete sequence
Position Repeat Coverage Repeat
46070 TTG * 9 25/27 TTG TTG TTG TTG TTG TTG TTG TGA TTG
46636 TGT * 8 24/24 TGT TGT TGT TGT TGT TGT TGT TGT
50262 CAT * 11 30/33 CAT CGT CAT CAT CAT CAT CAT CAT CAC CAC CAT
81554 GCA * 11 31/33 GCA GCT GCC GCA GCA GCA GCA GCA GCA GCA GCA
85007 ACC * 7 19/21 ACC ACC CCC ACC ACC ACC CCC
101843 CCA * 7 20/21 CCA CCA CCA CCA CCA CCT CCA
105236 TGG * 10 28/30 TGG TGG TGG TGG TGG TGG CGG TGG TAG TGG
106342 TTA * 9 25/27 TTA ATA TTA TTA TTA TTA TTA TTA TGA
113285 AGC * 7 19/21 AGC AGG AGC AGC AGC AGG AGC
113427 TGA * 8 22/24 TGA TGA TGA CGA TGA TGA TGA TGT
113452 GAT * 7 19/21 GAT GGC GAT GAT GAT GAT GAT
125264 CAG * 8 22/24 CAG AAG CAG CAG CAG CAG GAG CAG
125561 GCA * 7 19/21 GCA GCA GTA GCA GTA GCA GCA
134068 TGG * 7 19/21 TGG TGG TAG TGA TGG TGG TGG
134104 TGG * 7 19/21 TGG TGG TGG TGG TGG CGC TGG
145188 TAG * 12 33/36 TAG TAG TGG TAG AAG TAG TAG TAG TAG CAG TAG TAG
163000 ACA * 11 30/33 ACA ACA ACA ACA ACA ACC ACA ACA ACG ACC ACA
165625 CAA * 8 22/24 CAA CAA CAA GAG CAA CAA CAA CAA
166585 GCA * 7 20/21 GCA GCA GCA GCA ACA GCA GCA
174191 CAA * 9 25/27 CAA CAA CAA CAA CAA CAA CAA CTA CGA
174281 AAC * 7 19/21 AAC AAC TCC AAC AAC AAC AAC
174429 CAG * 11 31/33 CAG CAG CAG CAG CAG CAG CAA CAG CAG CAC CAG
174474 CAG * 11 31/33 CAG CAG CAG CAA CAG CAA CAG CAG CAG CAG CAG
174972 CAG * 7 20/21 CAG CAG CAC CAG CAG CAG CAG
177911 ACA * 7 19/21 ACA GCA ACA GCA ACA ACA ACA
178433 ACT * 12 33/36 ACT ACT ACT ATT ACT ACT ACT ACT ACT ACA ACT ACA
178693 CAA * 10 27/30 CAA CAA CAA CAA CAA CAA CAG CAA CAA TCA
179902 GCA * 7 19/21 GCA CCA GCA GCA GCA GCA ACA
180445 AGG * 8 22/24 AGG AGG AGA AGG ACG AGG AGG AGG
190365 AAC * 7 19/21 AAC AAC AAC AAC AAC AGC AGC
208399 TGC * 7 19/21 TGC TGG TGC TGG TGC TGC TGC
208426 TGC * 11 30/33 TGC TGC TGC TGT TGC TGC TGC TGC TGC TGT TGT
226878 CTC * 7 19/21 CTC CTC CTC CTC CTC CTC TTG
228579 AGC * 7 19/21 AGC AGG AGC AGG AGC AGC AGC
231687 CTG * 7 19/21 CTG CTG CTC CTG CTG CTT CTG
231879 ATC * 8 22/24 ATC ACC ATC ACC ATC ATC ATC ATC
240019 AGC * 7 19/21 AGC AGG AGC AGC AGC AGC AGA
243402 GAT * 10 27/30 GAT GAT GAT GAT GAT GAT GGT GAT GAT CAG
245700 CTG * 11 31/33 CTG CTT CTG CTG CTG CTG CTG CTG CTG CTG CCG
276067 TGC * 7 19/21 TGC TGC TGC TGT TGC TGC TGT
276105 CTG * 10 27/30 CTG CTG TTG CTG CTT CTG CTG CTG CTG TTG
280901 AGC * 7 19/21 AGC AGC ATC AGC AGT AGC AGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 296497
Total number of repeats detected.............. 42
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 2 2 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 4 4 0 0 0 0 0 0 0 0 0 0 0
ACA 2 1 1 0 0 0 0 0 0 0 0 0 0
ACT 1 0 1 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAG 1 0 1 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 3 2 1 0 0 0 0 0 0 0 0 0 0
TGC 3 2 1 0 0 0 0 0 0 0 0 0 0
GAT 2 1 1 0 0 0 0 0 0 0 0 0 0
GCA 4 3 1 0 0 0 0 0 0 0 0 0 0
CAA 3 2 1 0 0 0 0 0 0 0 0 0 0
CAT 1 0 1 0 0 0 0 0 0 0 0 0 0
CAG 4 2 2 0 0 0 0 0 0 0 0 0 0
CTG 3 1 2 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
2 AAC + 2 ACA + 3 CAA + 0 GTT + 1 TTG + 1 TGT = 9
0 ATG + 1 TGA + 2 GAT + 1 CAT + 1 ATC + 0 TCA = 5
0 AGT + 0 GTA + 1 TAG + 1 ACT + 0 CTA + 0 TAC = 2
1 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 2
4 AGC + 4 GCA + 4 CAG + 0 GCT + 3 CTG + 3 TGC = 18
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
1 ACC + 1 CCA + 0 CAC + 0 GGT + 0 GTG + 3 TGG = 5
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7290119|gb|AE003420.1|AE003420 Drosophila melanogaster genomic scaffold 142000013386054 section 4 of 35, complete sequence
Position Repeat Coverage Repeat
19046 CAC * 8 22/24 CAC CAC CGC CAC CAA CAC CAC CAC
29816 GCA * 7 19/21 GCA ACA GCA GCA GCA ACA GCA
34624 CAG * 8 22/24 CAG CTG CAG CAG CAG CAT CAG CAG
36906 GAT * 7 19/21 GAT GAT AAT GAT GAT GAT GAC
40234 TGC * 15 41/45 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGG TGA TGC AAC
42343 GGA * 7 19/21 GGA GGA GCA GGA GGA GGA GGC
43085 CAG * 8 23/24 CAG CAG CAG CAG CAG CAG CAG CAA
65398 TGT * 7 19/21 TGT TGC TGT GGT TGT TGT TGT
66577 TGC * 7 19/21 TGC TGC TGC TGT TGC TGC TGA
67395 CTG * 7 20/21 CTG CTG TTG CTG CTG CTG CTG
67482 CTG * 7 20/21 CTG CTG CTG CTG CTG CTG ATG
67655 GCT * 8 22/24 GCT CCT GCT GCT GCT GCT GCT GTT
68086 TGC * 10 27/30 TGC TGC TGC TGC TGC TGT TGC TGC AGC TCC
68144 GCT * 12 33/36 GCT GCT GTT GCT GCT GCT GTT GCT GCT GCT GCT GCA
68350 TGC * 7 19/21 TGC TGC TGA AGC TGC TGC TGC
68405 GCT * 10 28/30 GCT GTT GTT GCT GCT GCT GCT GCT GCT GCT
72311 CGT * 8 22/24 CGT CGT CGT CGT CGT CGT CGT CTA
75209 CGT * 7 20/21 CGT CGT CGT CGT CGT CGT TGT
80071 GAG * 8 22/24 GAG GAG GAG GAG GAG AAG GAG AAG
81656 TGT * 7 19/21 TGT TGT CGT TCT TGT TGT TGT
94672 TGT * 10 27/30 TGT TGT TGT TGT TGT TGT TGT TGT TGT GAC
94828 GCT * 12 33/36 GCT GCT GTT GCT GCT GCT GCT GCT GCT GTT GCT GGT
99001 GCC * 7 19/21 GCC GCC GCC GCC GCC GCT GCT
105088 ATC * 11 30/33 ATC ATC ATC ATC ATC ATC GTC ATC ATC ATG TTC
122209 GTT * 7 20/21 GTT GTT GTT GTT GTT GTC GTT
168548 TTG * 11 30/33 TTG TTG TTT TTG TTG TTG TTG TTG TTG CTG GTG
179643 GGT * 8 22/24 GGT GGT GGT GGT GGT GGT CGT CGT
183000 GAT * 7 19/21 GAT TAT GAT GAT GAT GAC GAT
185830 GCT * 22 61/66 GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCC GCC GCA GCT GCT GGT GCT GCT GCT GCG GCT
203455 AAG * 7 19/21 AAG AAG AAA AAG AAA AAG AAG
215285 AAC * 9 25/27 AAC AAC AAC AAC AAC AAC CAC CAC AAC
228703 GAG * 8 22/24 GAG GAG GAG AAG GAG GAG AAG GAG
232416 GGC * 7 19/21 GGC GGT GGC GGC GGC GGC GGT
232820 GAC * 7 19/21 GAC GAG GAC GAT GAC GAC GAC
241676 TGC * 8 22/24 TGC TGC AGC TGC TGC TGG TGC TGC
263910 CCT * 7 19/21 CCT TCT CCT CCT CCT ACT CCT
267733 CTC * 7 19/21 CTC CTC CTC ACC CTC CTC CTC
270613 CAT * 7 19/21 CAT CAC CAT CAC CAT CAT CAT
276748 GCT * 17 46/51 GCT GCT GCT GCT GCT GCT GCT GCT GCA GCT GCA GCT GCT TCT GCA GCT ACT
-----------------------------------------------------------------------------------------
Total sequence length......................... 302855
Total number of repeats detected.............. 39
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 0 1 0 0 0 0 0 0 0 0 0 0
TTG 1 0 1 0 0 0 0 0 0 0 0 0 0
TGT 3 2 1 0 0 0 0 0 0 0 0 0 0
TGC 5 3 1 1 0 0 0 0 0 0 0 0 0
GAT 2 2 0 0 0 0 0 0 0 0 0 0 0
GAG 2 2 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 6 1 3 0 1 0 1 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 2 2 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CGT 2 2 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
1 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 1
1 AAC + 0 ACA + 0 CAA + 1 GTT + 1 TTG + 3 TGT = 6
0 ATG + 0 TGA + 2 GAT + 1 CAT + 1 ATC + 0 TCA = 4
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 2 GAG + 1 CCT + 1 CTC + 0 TCC = 5
0 AGC + 1 GCA + 2 CAG + 6 GCT + 2 CTG + 5 TGC = 16
0 ACG + 0 CGA + 1 GAC + 2 CGT + 0 GTC + 0 TCG = 3
0 ACC + 0 CCA + 1 CAC + 1 GGT + 0 GTG + 0 TGG = 2
1 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7290091|gb|AE003419.1|AE003419 Drosophila melanogaster genomic scaffold 142000013386054 section 3 of 35, complete sequence
Position Repeat Coverage Repeat
12181 CAG * 8 22/24 CAG CAG GAG CAG CAG GAG CAG CAG
12242 ATT * 7 19/21 ATT ATT ATT ATT ATT GCT ATT
27830 CGT * 7 19/21 CGT CGT CAT CGT CGT CGT CAT
35580 TGG * 7 19/21 TGG TGG TGG TGG TAG TGG TGC
48795 GCA * 14 39/42 GCA TCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GTC GCA GCA
81476 TCC * 7 19/21 TCC TCC TGC TCC ACC TCC TCC
88296 CCG * 7 19/21 CCG CCG CCG CCT CCG CCG GCG
88923 GTT * 9 25/27 GTT GTA GTT GTT TTT GTT GTT GTT GTT
115874 GCA * 7 19/21 GCA TCA GCA TCA GCA GCA GCA
120801 CAG * 7 19/21 CAG CAG CAG AAG CAA CAG CAG
169948 TCC * 7 19/21 TCC TCC TCT TCT TCC TCC TCC
175198 AGT * 14 38/42 AGT AGT AGT AGT AGT TGT AGT AGT AGT ATG AGT AGT AGT ATT
175243 AGT * 7 19/21 AGT AGT GGT AGT AGT AGT ATT
175267 AGT * 7 19/21 AGT AGT GGT AGT AGT AGT ATT
175291 AGT * 7 19/21 AGT AGT GGT AGT AGT AGT ATT
175315 AGT * 7 20/21 AGT AGT GGT AGT AGT AGT AGT
176790 GTA * 7 19/21 GTA GCA GTA GTA GTA GAA GTA
194954 CAG * 7 19/21 CAG CAG CAG CAG CAG CAG GAA
211429 AGC * 7 19/21 AGC AGC AAC AAC AGC AGC AGC
211485 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CAA
230470 GCC * 7 19/21 GCC GCC GCC GCC GCC GCC GTG
232595 TAA * 7 19/21 TAA TAA TAA TAA TAA TAA TTT
238235 AAC * 7 19/21 AAC AAC AAC AAC AAC AAC AGT
238455 CAG * 11 31/33 CAG CAA CCG CAG CAG CAG CAG CAG CAG CAG CAG
239583 CTT * 7 19/21 CTT CTT CTA CTC CTT CTT CTT
244329 CAT * 11 30/33 CAT CAT CAT CAT CAT CAT CAT CAT CAT CGT AGT
249910 GAT * 7 20/21 GAT GAC GAT GAT GAT GAT GAT
262171 CGA * 7 19/21 CGA CGA CGA CGA CGA CGA TGG
-----------------------------------------------------------------------------------------
Total sequence length......................... 299275
Total number of repeats detected.............. 28
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGT 5 4 0 1 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TCC 2 2 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTA 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 1 0 1 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 0 1 0 0 0 0 0 0 0 0 0 0
CAG 5 4 1 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CGA 1 1 0 0 0 0 0 0 0 0 0 0 0
CGT 1 1 0 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 1 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 1
1 AAC + 0 ACA + 0 CAA + 1 GTT + 0 TTG + 0 TGT = 2
0 ATG + 0 TGA + 1 GAT + 1 CAT + 0 ATC + 0 TCA = 2
5 AGT + 1 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 6
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 2 TCC = 2
1 AGC + 2 GCA + 5 CAG + 0 GCT + 0 CTG + 0 TGC = 8
0 ACG + 1 CGA + 0 GAC + 1 CGT + 0 GTC + 0 TCG = 2
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 1 TGG = 1
0 GGC + 0 GCG + 0 CGG + 1 GCC + 1 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7290053|gb|AE003418.1|AE003418 Drosophila melanogaster genomic scaffold 142000013386054 section 2 of 35, complete sequence
Position Repeat Coverage Repeat
24224 GCA * 7 19/21 GCA GGC GCA GCA GCA GCA GCA
27581 CAA * 7 19/21 CAA CAA GAA CAA CAA CAA AAA
43490 CAC * 7 19/21 CAC CAC CAG CAG CAC CAC CAC
64316 TGC * 7 19/21 TGC TGT TGC TGC TGC TGT TGC
90098 CAG * 8 22/24 CAG CAG CAG CAG GAG CAA CAG CAG
92337 GGA * 13 36/39 GGA GGC GGA GTA GGA GGA GGA GGA GGA GGA GGA GGA GTA
98935 TGG * 10 27/30 TGG TGG TGG TGG TGG TGG TGG TGC TGC TGC
101099 TAT * 7 19/21 TAT TAT TAC TAT TAT GAT TAT
101797 TGA * 7 19/21 TGA TGG TGA TGA TGA TGA TGG
118834 TGT * 7 19/21 TGT TGT TGC TGT TGT TGC TGT
146126 GAA * 7 19/21 GAA GAA AAA TAA GAA GAA GAA
173332 ATC * 7 19/21 ATC ATC ACC ATC GTC ATC ATC
194169 CAA * 7 19/21 CAA CAT CGA CAA CAA CAA CAA
203115 GTG * 7 19/21 GTG GTG GTT GTG GTG GTG GTA
227925 AAG * 7 20/21 AAG AAG AAG AAG AAG AAG CAG
281514 AGC * 7 19/21 AGC AGC AAC AAC AGC AGC AGC
281570 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 299970
Total number of repeats detected.............. 17
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 0 0 1 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 1
1 AAG + 0 AGA + 1 GAA + 0 CTT + 0 TTC + 0 TCT = 2
0 AAC + 0 ACA + 2 CAA + 0 GTT + 0 TTG + 1 TGT = 3
0 ATG + 1 TGA + 0 GAT + 0 CAT + 1 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 1
1 AGC + 1 GCA + 2 CAG + 0 GCT + 0 CTG + 1 TGC = 5
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 1 CAC + 0 GGT + 1 GTG + 1 TGG = 3
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7290018|gb|AE003417.1|AE003417 Drosophila melanogaster genomic scaffold 142000013386054 section 1 of 35, complete sequence
Position Repeat Coverage Repeat
134841 GAT * 7 20/21 GAT GAT GAT GAT GAT GAT GCT
263991 GGC * 7 19/21 GGC AGC GGC AGC GGC GGC GGC
299887 ATG * 7 19/21 ATG CTG ATG AAG ATG ATG ATG
301796 CTC * 7 19/21 CTC CTG CTC CTG CTC CTC CTC
-----------------------------------------------------------------------------------------
Total sequence length......................... 314661
Total number of repeats detected.............. 4
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
1 ATG + 0 TGA + 1 GAT + 0 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 1
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 0
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
1 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7289092|gb|AE002987.1|AE002987 Drosophila melanogaster genomic scaffold 142000013385379, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 71090
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289791|gb|AE002991.1|AE002991 Drosophila melanogaster genomic scaffold 142000013385979, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 7017
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7316106|gb|AE002593.1|AE002593 Drosophila melanogaster genomic scaffold 142000013386053, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7293636|gb|AE003513.1|AE003513 Drosophila melanogaster genomic scaffold 142000013386053 section 30 of 30, complete sequence
Position Repeat Coverage Repeat
6139 AGG * 8 22/24 AGG AGG AGG AGG AGA AGA AGG AGG
12618 GTT * 8 22/24 GTT GTT GTT GTT GTT GTT ATT GCT
13891 GAG * 8 22/24 GAG GAG AGG GAG GAG GAG GAG GAG
19522 TAA * 8 23/24 TAA TAA TAA TAA TAA TAC TAA TAA
19805 AGC * 10 27/30 AGC AGC AGT AGT AGC AGC AGC AGC AGC AGG
19942 AGC * 12 33/36 AGC AAC AGA AGC AGC AGC AGC AGC AGC AGC AGC AGT
22319 GTG * 10 27/30 GTG GTG GTG GTG GTG GTG GTG GTT GTG GGA
28784 TAA * 7 19/21 TAA TAA TAA TAA TAA TAC TTA
31921 AAG * 7 19/21 AAG AAG GAG AAG AAG AAG GAG
36925 ACT * 7 19/21 ACT ACT ACT ACT ACT TCA ACT
59179 CTC * 9 25/27 CTC CTC CTC CTC CTC CTC CTC CTC CAT
73791 GAA * 8 22/24 GAA GAA GAA GAA GAA GAA GAA CCA
74951 TGT * 7 19/21 TGT TGC TGT TGT TGT TGT TGC
78051 CTC * 9 25/27 CTC CTC CTC CTC CTC ATC TTC CTC CTC
78386 CTG * 7 19/21 CTG CTG CTG CTG CTG CGG CGG
79490 GCG * 7 19/21 GCG GCG GCG GCG GCT GCA GCG
79623 CTG * 8 22/24 CTG CTG CTG CTG CTG CTG CTG ATC
79936 GGC * 7 19/21 GGC GGC AGC GGC TGC GGC GGC
80163 CTC * 7 19/21 CTC CTG CTC CTC CGC CTC CTC
80196 GCT * 8 22/24 GCT GCT GCT GCT GCT GCT GTG GCT
80323 GTT * 10 27/30 GTT GTT GTT GTT GTT GCT GTT GTT GTG ATT
80520 CTG * 8 22/24 CTG CTG CTG ATG GTG CTG CTG CTG
82221 CTG * 8 23/24 CTG CTG CTG CTG CTG TTG CTG CTG
82329 CTG * 7 19/21 CTG CTG CTG TTG TTG CTG CTG
82410 CTG * 8 23/24 CTG CTG CTG CTG TTG CTG CTG CTG
82638 TCC * 15 41/45 TCC TCC TCC ACC TCC TCC TCC TCC TCC TCC TGC TCC TCC CCC ACC
86147 AGG * 8 22/24 AGG AGG AGG AGG AGG AGG ATG GGG
88693 CTT * 8 22/24 CTT CTT CTT CTT CTT CAT CAT CTT
88838 AAG * 7 19/21 AAG AAG AAG AAG ACG AAG CAG
94980 GCT * 8 23/24 GCT GCT GTT GCT GCT GCT GCT GCT
105980 GGT * 16 45/48 GGT GGT GGT GCT GGT GGT GCT GGT GGT GGT GGT GGT GGT GGT GGT GGG
118394 TGC * 15 41/45 TGC TGC TGC GGC TGC GGC TGC TGC TGC TGC TGC TGC TGC TGC GAC
134467 TGC * 14 38/42 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC CGC CGC CGA
134541 CTG * 7 19/21 CTG CTG CTG CAG CTG CTG CTC
135148 TGC * 7 19/21 TGC TGC TGC TGG TGC TGT TGC
135743 CGG * 7 19/21 CGG CGG CGG CGG CGG CGG CTT
136526 GTG * 7 20/21 GTG GTG GTG GTG GTG TTG GTG
136836 TGC * 7 19/21 TGC CGC TGC TGC TGG TGC TGC
136883 TGC * 9 25/27 TGC TGC TGT TGC TGC TGC TGG TGC TGC
136965 GCT * 8 22/24 GCT GCT GCT GTT GTT GCT GCT GCT
147458 CAA * 10 27/30 CAA CAA CAG CAA CAA CAG CAA CAA CAA CAG
153285 CTG * 7 19/21 CTG CTT CTG CTT CTG CTG CTG
155676 CTG * 15 43/45 CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTT TTG CTG
161574 GGT * 8 22/24 GGT GAT GGT GAT GGT GGT GGT GGT
164521 GGC * 7 19/21 GGC GGC GGC GGC CGC GGC AGC
168028 GCT * 7 19/21 GCT GCT GCG GCA GCT GCT GCT
169447 CAA * 8 22/24 CAA CAG CAA CAA CAA CTA CAA CAA
169492 CAA * 8 22/24 CAA CAA CAA CAA CAA CAG CAG CAA
174146 GGA * 8 22/24 GGA GGA GGA GGA GGA TGA GGA GCA
185547 CAA * 8 22/24 CAA CAA CAA CTA CAA CAG CAA CAA
199848 CGA * 8 23/24 CGA CGA CGA CGA CAA CGA CGA CGA
200503 GCA * 8 22/24 GCA ACA ACA GCA GCA GCA GCA GCA
200558 CAG * 7 20/21 CAG CAC CAG CAG CAG CAG CAG
-----------------------------------------------------------------------------------------
Total sequence length......................... 207355
Total number of repeats detected.............. 53
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAG 2 2 0 0 0 0 0 0 0 0 0 0 0
AGG 2 2 0 0 0 0 0 0 0 0 0 0 0
AGC 2 0 2 0 0 0 0 0 0 0 0 0 0
ACT 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 2 2 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 5 3 0 2 0 0 0 0 0 0 0 0 0
TCC 1 0 0 1 0 0 0 0 0 0 0 0 0
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 2 1 1 0 0 0 0 0 0 0 0 0 0
GTG 2 1 1 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 2 1 0 0 1 0 0 0 0 0 0 0 0
GGC 2 2 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 4 4 0 0 0 0 0 0 0 0 0 0 0
GCG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 4 3 1 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 9 8 0 1 0 0 0 0 0 0 0 0 0
CTC 3 3 0 0 0 0 0 0 0 0 0 0 0
CGA 1 1 0 0 0 0 0 0 0 0 0 0 0
CGG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 2 TAA + 0 ATT + 0 TTA + 0 TAT = 2
2 AAG + 0 AGA + 1 GAA + 1 CTT + 0 TTC + 0 TCT = 4
0 AAC + 0 ACA + 4 CAA + 2 GTT + 0 TTG + 1 TGT = 7
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 1 ACT + 0 CTA + 0 TAC = 1
2 AGG + 1 GGA + 1 GAG + 0 CCT + 3 CTC + 1 TCC = 8
2 AGC + 1 GCA + 1 CAG + 4 GCT + 9 CTG + 5 TGC = 22
0 ACG + 1 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 2 GGT + 2 GTG + 0 TGG = 4
2 GGC + 1 GCG + 1 CGG + 0 GCC + 0 CCG + 0 CGC = 4
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7293579|gb|AE003512.1|AE003512 Drosophila melanogaster genomic scaffold 142000013386053 section 29 of 30, complete sequence
Position Repeat Coverage Repeat
18762 ATG * 13 36/39 ATG ATA ATG ATG ATG ATG ATG ATG ATG ATG ATG AGG CTG
20391 CTC * 7 19/21 CTC CTC CTC CTG CTG CTC CTC
26118 GCA * 11 31/33 GCA ACA ACA GCA GCA GCA GCA GCA GCA GCA GCA
27344 AGC * 7 19/21 AGC AGC AGC AGC GGC AGC AGG
31540 TCC * 8 22/24 TCC TCC TGC TCC TCC TGC TCC TCC
39316 CTC * 8 22/24 CTC CTG CTC CTC CTC CTC CTT CTC
51822 ACC * 8 22/24 ACC ATC ACT ACC ACC ACC ACC ACC
59705 GAT * 7 19/21 GAT GAT GAT GCT GAT GCT GAT
70578 CAG * 8 22/24 CAG CTG CAG CAG CAG CAG CAG CAC
70629 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CAT
78688 CCT * 8 22/24 CCT CCT CCT GCT CCT CCT CGT CCT
88590 GCT * 11 30/33 GCT GCT GCT GCT GCT GCT GCT GCT GCT GAT TCG
108703 CTC * 8 22/24 CTC ATC CTC CTC CTC CTC CGC CTC
115652 CAG * 11 30/33 CAG CAG CCG AAG CAG CAG CAG CAG CAG CAG CAA
115688 CAG * 15 41/45 CAG CAG CAG CAG CAG CAG CAG CAG CAG CGG CAG TAG TAG CAG CAA
119335 GAC * 8 23/24 GAC GAC GAC GAC GAC GAC GAT GAC
121011 TGC * 8 22/24 TGC TGT TGC TGC TGC TGC TGC TAC
122822 GCA * 7 20/21 GCA GCA GCA ACA GCA GCA GCA
139291 TCC * 12 33/36 TCC TCC TCC TCC TCC TCC TCC TCC TCG TCC TCC TTA
146231 GCT * 11 30/33 GCT GCT GCG GCT GCC GCT GCT GCT GCT GCT GCG
146358 GCT * 17 46/51 GCT GCT GTT GCT GCT GCT GCT GCT GTT GCT GCT GCT GTT GCT GTT GCT GTT
146477 TGC * 15 42/45 TGC TGT TGT TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGT TGC
146689 CTG * 8 22/24 CTG CTG CTG TTG CTG CTG CTG TTG
146717 TGC * 8 23/24 TGC TGC TGC TGC TGC TGC TGT TGC
146798 CCA * 7 19/21 CCA CCA CCA CCA CCA GGA CCA
147468 AAG * 7 19/21 AAG AAG AAG CAG AAG CAG AAG
147885 GCT * 7 19/21 GCT GCT GCT GCT GCT GCT ATT
154335 ACA * 8 23/24 ACA ACA ACA ACA ACA ACA AGA ACA
155952 TCA * 7 19/21 TCA TCA TCA TTA TCA TCA TCC
182859 GCC * 7 19/21 GCC GCC GCC GTC GCC TCC GCC
230322 TGC * 7 21/21 TGC TGC TGC TGC TGC TGC TGC
238244 GCT * 7 19/21 GCT GCT GCT GCT GCT GTG GCT
241441 CAG * 12 35/36 CAG CAG CAG CAG CAG CAG CAA CAG CAG CAG CAG CAG
262929 TGG * 11 30/33 TGG TGT TGG TGG TGG TGG TTG TGG TGG TTG TGG
262989 TGC * 7 19/21 TGC TGC TGT TGC TGC TGC TGG
263485 TGC * 7 19/21 TGC TGC TGC TGC TGT TGC TGT
265728 TGC * 7 19/21 TGC GGC GGC TGC TGC TGC TGC
292907 GGA * 7 19/21 GGA GGA GGC GGA GGC GGA GGA
296850 TGC * 10 27/30 TGC TGC AGC TGC TGC TGC TGC TGC TGT TCC
-----------------------------------------------------------------------------------------
Total sequence length......................... 301656
Total number of repeats detected.............. 39
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 0 0 1 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 8 6 1 1 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
TCC 2 1 1 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 1 1 0 0 0 0 0 0 0 0 0 0
GCT 5 2 2 0 1 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 5 2 2 1 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 3 3 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
1 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 1
0 AAC + 1 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 1
1 ATG + 0 TGA + 1 GAT + 0 CAT + 0 ATC + 1 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 0 GAG + 1 CCT + 3 CTC + 2 TCC = 7
1 AGC + 2 GCA + 5 CAG + 5 GCT + 1 CTG + 8 TGC = 22
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 1
1 ACC + 1 CCA + 0 CAC + 0 GGT + 0 GTG + 1 TGG = 3
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7293536|gb|AE003511.1|AE003511 Drosophila melanogaster genomic scaffold 142000013386053 section 28 of 30, complete sequence
Position Repeat Coverage Repeat
3635 GGA * 7 19/21 GGA GCC GGA GGA GGA GGA GGA
28707 AGC * 7 19/21 AGC AGC AGC AGC AGC GGC AGT
33255 CAA * 10 27/30 CAA CAA CAA CAA CAA CAA CAG CAA CAA ATA
33304 AAC * 7 19/21 AAC AAC GAC AGC AAC AAC AAC
65799 CAG * 7 19/21 CAG CAG CAA CAG CAG CAA CAG
98637 TGT * 7 20/21 TGT TGT TGT TGT TGC TGT TGT
99187 GTT * 7 19/21 GTT GTT GTC GCT GTT GTT GTT
126257 CCA * 7 20/21 CCA CCA CGA CCA CCA CCA CCA
132275 GCA * 7 19/21 GCA ACA GCA ACA GCA GCA GCA
147255 TGC * 7 19/21 TGC TGT TGC TGC TGC TGC TTC
174880 TGT * 8 22/24 TGT TTT TGT TGC TGT TGT TGT TGT
178279 CAG * 8 23/24 CAG CAG CAG CAG CAG CAG CAG CCG
178455 GCA * 8 22/24 GCA GCA GCA GCA GCA GCA GCA ACC
180188 CCA * 7 19/21 CCA GCA CCA CAA CCA CCA CCA
187042 TGC * 9 25/27 TGC TGG TGC TGC TGC TGC GGC TGC TGC
195403 CAG * 12 33/36 CAG CAG CAG CAG CAA CAG CAG CAG CAG CAG GAA CAG
206387 ACA * 9 25/27 ACA ACA ACA ACA ACA ACA ACA ACA GCT
207943 CAG * 7 19/21 CAG CAG CAG TAG CAG CAA CAG
219999 CTC * 7 20/21 CTC CTC CTC CTC CTC CTC CAC
220033 TCG * 7 19/21 TCG TCG TGG TCA TCG TCG TCG
227821 AAT * 7 20/21 AAT AAT AAT AAT GAT AAT AAT
249513 GTT * 11 30/33 GTT GTT GTT GTT GTT GTT GTT GTT ATG ATT GTT
253315 TGT * 7 19/21 TGT TGT TGT TGT GGT TGT TAT
260705 CAT * 9 25/27 CAT CAT CAT CAT CAT CAT CAT CAT CCA
262858 TAT * 9 25/27 TAT TAT TAT TAT TAT TAT TAT TAT ATT
267569 CTG * 7 19/21 CTG CTG CTG CTG CTG CTG CGC
273223 CTT * 7 20/21 CTT CTT CTT CTT CTT CTT CTG
299433 AAC * 8 22/24 AAC AAC AAC AAC AAC GAC AAC AGC
305075 CAA * 12 33/36 CAA CAA CAC CAA CAC CAA CAA CAA CAA CAA CAA CAG
313691 TTA * 7 19/21 TTA TTA TTA TTT TTA TTT TTA
315617 GAG * 7 20/21 GAG GAG GAG GAG GAG GAC GAG
324065 CTC * 7 19/21 CTC CTC CTC CTC CTC CTC CCA
325992 ATC * 9 25/27 ATC ATC ATC ATC ATC ATC GTC ATC CTC
328324 TCC * 12 33/36 TCC TCC GCC TCC TCC TCC TCC TCC TCC TCC ATC TCC
337276 GGT * 7 19/21 GGT GGT GGT GGT GGT GGT GTG
339900 CTG * 8 23/24 CTG CTG CTG CTG CTG CTG CTG CGG
-----------------------------------------------------------------------------------------
Total sequence length......................... 343711
Total number of repeats detected.............. 36
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 2 2 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 3 3 0 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
TCC 1 0 1 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 2 1 1 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 2 0 2 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 4 3 1 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 2 2 0 0 0 0 0 0 0 0 0 0 0
CTC 2 2 0 0 0 0 0 0 0 0 0 0 0
CCA 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 1 TAT = 3
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 1
2 AAC + 1 ACA + 2 CAA + 2 GTT + 0 TTG + 3 TGT = 10
0 ATG + 0 TGA + 0 GAT + 1 CAT + 1 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 1 GAG + 0 CCT + 2 CTC + 1 TCC = 5
1 AGC + 2 GCA + 4 CAG + 0 GCT + 2 CTG + 2 TGC = 11
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 1 TCG = 1
0 ACC + 2 CCA + 0 CAC + 1 GGT + 0 GTG + 0 TGG = 3
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7293504|gb|AE003510.1|AE003510 Drosophila melanogaster genomic scaffold 142000013386053 section 27 of 30, complete sequence
Position Repeat Coverage Repeat
5688 CAT * 7 20/21 CAT CAT CAT CAT CAT CAT CGT
6371 CAT * 7 19/21 CAT CAT CAT CAT CAT CAC CAG
9000 GTG * 7 19/21 GTG GTC GTC GTG GTG GTG GTG
20634 GTC * 7 19/21 GTC GTC GTC GTC GTC GTC ACC
32214 ACA * 7 21/21 ACA ACA ACA ACA ACA ACA ACA
32622 CAG * 7 19/21 CAG GAG CAG CAG CAG CAG CAA
41478 AGC * 9 25/27 AGC AGC AGC AGC AGC AGC AGC CGC AAC
44819 CAT * 7 19/21 CAT CAT CAT TAT CAT TAT CAT
58041 GTT * 8 23/24 GTT ATT GTT GTT GTT GTT GTT GTT
58066 CTG * 7 20/21 CTG CTG CTG CTG CTG CTG CTA
64249 AGG * 7 19/21 AGG AGG ACG AGG AGG AGG CGG
68437 CCG * 7 19/21 CCG CCA CCG CCG CCG CCG GCG
78513 CAA * 8 23/24 CAA CAA CAA CAA AAA CAA CAA CAA
80104 GAA * 8 22/24 GAA GAA GAA GAA GAA GAA GAA CAG
93971 GGT * 8 22/24 GGT AGT GGT GGT GGT GGT GGC GGT
94798 GAG * 7 19/21 GAG GAG GAT GAG GAG GAA GAG
99093 GCA * 7 19/21 GCA ACA GCA GCA GCA ACA GCA
111232 GAC * 8 23/24 GAC GAG GAC GAC GAC GAC GAC GAC
120769 CAG * 7 19/21 CAG CAG GTG CAG CAG CAG CAG
123331 AAC * 8 22/24 AAC AAC AAC AAC AAC AAC ACC CAC
161215 CAG * 7 20/21 CAG CAG CAG CAG CAG CAG CAC
163199 ATG * 8 22/24 ATG ATG ATG ATG ATG ATG ATG GCG
169971 GCA * 10 28/30 GCA GCA GCA GCA GCA ACA GCG GCA GCA GCA
182322 TTG * 8 22/24 TTG TTG TTG TTG TTG TCG TTG TTT
183405 TGT * 8 23/24 TGT TGT TGT TGT TGT TGT TGT TTT
216136 GCA * 7 19/21 GCA TCA GCA GCA GCA GCA GTA
216160 GCA * 7 19/21 GCA GCA GTA GGA GCA GCA GCA
221011 TTG * 7 19/21 TTG TTG TTG TTG TTG TTG TCC
221386 TCG * 9 25/27 TCG TCG TCG TCG TCG TCG TCG CCG TTG
225788 CAA * 8 22/24 CAA CAA CAA CTA CAG CAA CAA CAA
235534 ATA * 14 39/42 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATT TAA
237832 GAT * 20 54/60 GAT GAT GAT GAC GAT GAC GAT GAT GAT GGT GAT GAT GAT GAT GAT GAT GAT GAA GAA GAA
249809 TTG * 7 19/21 TTG CTG TTG TTG TTG TTG CTG
254886 CCT * 7 19/21 CCT CCT CCT CGT CCG CCT CCT
256402 GGT * 8 22/24 GGT GGT GGT GGT GGT GTT GGT GTT
261981 TCG * 7 19/21 TCG TCG TCG TCG TCG CCG CCG
263755 TTG * 8 22/24 TTG TTG TTG TTG TTG TTA TTG TCG
269197 AGG * 12 34/36 AGG AGG AGG AGG AGG AGG AGG AGG AGG AGA AAG AGG
269244 GAG * 9 25/27 GAG GAG CAG GAG GAG GAA GAG GAG GAG
-----------------------------------------------------------------------------------------
Total sequence length......................... 298477
Total number of repeats detected.............. 39
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 0 0 1 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 2 1 1 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 4 4 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TCG 2 2 0 0 0 0 0 0 0 0 0 0 0
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 0 0 0 0 1 0 0 0 0 0 0 0
GAG 2 2 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTC 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCA 4 3 1 0 0 0 0 0 0 0 0 0 0
CAA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAT 3 3 0 0 0 0 0 0 0 0 0 0 0
CAG 3 3 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 1 GAA + 0 CTT + 0 TTC + 0 TCT = 1
1 AAC + 1 ACA + 2 CAA + 1 GTT + 4 TTG + 1 TGT = 10
1 ATG + 0 TGA + 1 GAT + 3 CAT + 0 ATC + 0 TCA = 5
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
2 AGG + 0 GGA + 2 GAG + 1 CCT + 0 CTC + 0 TCC = 5
1 AGC + 4 GCA + 3 CAG + 0 GCT + 1 CTG + 0 TGC = 9
0 ACG + 0 CGA + 1 GAC + 0 CGT + 1 GTC + 2 TCG = 4
0 ACC + 0 CCA + 0 CAC + 2 GGT + 1 GTG + 0 TGG = 3
0 GGC + 0 GCG + 0 CGG + 0 GCC + 1 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7293467|gb|AE003509.1|AE003509 Drosophila melanogaster genomic scaffold 142000013386053 section 26 of 30, complete sequence
Position Repeat Coverage Repeat
378 GCT * 7 19/21 GCT GTT GCT GCT GTT GCT GCT
9462 CCG * 8 22/24 CCG CCG CCG CCG CCG CCG CCT CCT
9486 CCT * 9 25/27 CCT CCT CCT CCT CCT CCT GCT CCT CCA
13625 CCA * 8 22/24 CCA CCA ACA CCA GCA CCA CCA CCA
25644 AAT * 7 19/21 AAT AAT AAT AAT AAT ATT AAC
36061 GTA * 8 22/24 GTA GTA GTA GTA GTT GTA GTT GTA
43509 TCC * 8 22/24 TCC TCC TCC TCC TGC TGC TCC TCC
50579 CTA * 12 34/36 CTA CTA CTG CTA CTA CTG CTA CTA CTA CTA CTA CTA
57007 TAT * 8 24/24 TAT TAT TAT TAT TAT TAT TAT TAT
58710 AAT * 7 21/21 AAT AAT AAT AAT AAT AAT AAT
64800 CAA * 7 19/21 CAA CGA CAA CAA CAA CAA CAG
64841 ACA * 7 19/21 ACA AGT ACA ACA ACA ACA ACA
70267 TTG * 7 19/21 TTG TTG TTG TTT TTG CTG TTG
81857 AGA * 7 19/21 AGA AGA AGA AGA ACA AGA CGA
84312 AGC * 7 19/21 AGC AGC AGC AGC AGC AAC AAC
84517 ATG * 7 19/21 ATG TTG ATG ATG ATG ATG ACG
88975 TGC * 7 20/21 TGC CGC TGC TGC TGC TGC TGC
93749 CTT * 10 27/30 CTT CTT CTT CTT CTT CTT CTT CTA CTA CTG
94283 ACG * 7 19/21 ACG ACG ATG ATG ACG ACG ACG
100836 GAT * 7 20/21 GAT GCT GAT GAT GAT GAT GAT
101301 GCT * 7 20/21 GCT GCT GCT GCT GCT GCT GGT
109004 GTT * 7 20/21 GTT GCT GTT GTT GTT GTT GTT
113897 CAG * 10 27/30 CAG CAG CAG CAG CAG CAG CAG TCG CAG CAA
118011 TGC * 7 19/21 TGC CGC TGC TGC TGC TGC CGC
118228 CAG * 7 19/21 CAG CAG CAG CAA CAG CAA CAG
118282 GGA * 9 25/27 GGA GGA GTA GGA GGA GGA GGA GCA GGA
118327 GGA * 7 19/21 GGA GGG GCA GGA GGA GGA GGA
124302 GGA * 12 34/36 GGA GGA GGA GAA GGA GGA GGA GGA GGA GGA GGA GGG
124526 CCA * 8 22/24 CCA CCG CCA CCA CCA CCA CCA TCA
129188 TCA * 8 22/24 TCA TCA TCA TCA TCA TCG TCA TAA
132271 TGT * 12 34/36 TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT GTT
149076 CTG * 8 22/24 CTG CTT CTG CTG CTC CTG CTG CTG
151363 TCA * 10 27/30 TCA TCA TCA TCA TCA TCA TCA TCA TCG TTG
152855 TCC * 7 19/21 TCC TCC TGC TCC TCC TGC TCC
154728 TGT * 7 19/21 TGT TGT TCT CGT TGT TGT TGT
155166 TGT * 7 20/21 TGT TGT TGT TGT TGT TGT TGG
156827 TCA * 7 19/21 TCA TCA TCT TCG TCA TCA TCA
158563 GTG * 7 19/21 GTG GTG GTG ATG GTT GTG GTG
170800 GAG * 8 22/24 GAG GAG TCG GAG GAG GAG GAG GAG
176734 TCA * 8 22/24 TCA TCA TCA CCA TCA TCA TTA TCA
177702 GGC * 7 19/21 GGC GGC GGA GGC GGC GGA GGC
183906 TTG * 9 25/27 TTG TTG TCG TCG TTG TTG TTG TTG TTG
184948 GAG * 7 20/21 GAG GAG GAG GAG GAG GAG GCG
214248 TGT * 7 19/21 TGT CGT TGT TGT TGT GGT TGT
214824 GCA * 7 19/21 GCA GCA GCA GCA GCA TCA TCA
219179 CAC * 8 22/24 CAC CAC CAA CAC CAC CAC CGC CAC
223899 GCT * 8 23/24 GCT GCT GCT GCT GCT GCT GCT GCG
224893 GCT * 10 27/30 GCT GCT GCC GCC GCT GCT GCT GCT GCT CCT
224943 TGC * 7 19/21 TGC TGC TGC TGC TGC TGC ACC
227467 TGC * 7 19/21 TGC TGC TAC TGC TGC TGC TCC
227932 ATA * 9 25/27 ATA ATA ATA ATA ATA ATA ATA ATA TAA
248001 GTG * 13 36/39 GTG GTG GTG GTG GTT GTG GTG GTG GTT GTG GTG GTG GTT
249130 TGA * 18 49/54 TGA TGA TGA TGG TGA TGA TGA TGG TGA TGA TGA TGA TGG TGA TGA TGA TAA TGG
279231 AGG * 7 19/21 AGG AGG ATG AGG ATG AGG AGG
-----------------------------------------------------------------------------------------
Total sequence length......................... 303819
Total number of repeats detected.............. 54
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 2 2 0 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGA 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
ACG 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGA 1 0 0 0 1 0 0 0 0 0 0 0 0
TGT 4 3 1 0 0 0 0 0 0 0 0 0 0
TGC 4 4 0 0 0 0 0 0 0 0 0 0 0
TCA 4 3 1 0 0 0 0 0 0 0 0 0 0
TCC 2 2 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 2 2 0 0 0 0 0 0 0 0 0 0 0
GTA 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 2 1 0 1 0 0 0 0 0 0 0 0 0
GGA 3 2 1 0 0 0 0 0 0 0 0 0 0
GGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 4 3 1 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 1 1 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTA 1 0 1 0 0 0 0 0 0 0 0 0 0
CTT 1 0 1 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 2 2 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
2 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 4
0 AAG + 1 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 2
0 AAC + 1 ACA + 1 CAA + 1 GTT + 2 TTG + 4 TGT = 9
1 ATG + 1 TGA + 1 GAT + 0 CAT + 0 ATC + 4 TCA = 7
0 AGT + 1 GTA + 0 TAG + 0 ACT + 1 CTA + 0 TAC = 2
1 AGG + 3 GGA + 2 GAG + 1 CCT + 0 CTC + 2 TCC = 9
1 AGC + 1 GCA + 2 CAG + 4 GCT + 1 CTG + 4 TGC = 13
1 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 2 CCA + 1 CAC + 0 GGT + 2 GTG + 0 TGG = 5
1 GGC + 0 GCG + 0 CGG + 0 GCC + 1 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7293431|gb|AE003508.1|AE003508 Drosophila melanogaster genomic scaffold 142000013386053 section 25 of 30, complete sequence
Position Repeat Coverage Repeat
8858 AAC * 7 20/21 AAC AAC AAC AGC AAC AAC AAC
14332 GAG * 11 30/33 GAG GAG GAG GAG CAG GAG GAG CAG GAG CAG GAG
15892 GTT * 11 30/33 GTT ATT GTT GTT GTT GTT GTT GTT GAT GTT GCT
19630 ACA * 7 19/21 ACA ATA ACA ACA ATA ACA ACA
31401 CTG * 11 30/33 CTG CTT CTG CTG CTG CTG CTG CTG CTT CTG CTT
37451 GAC * 7 19/21 GAC GAC GAT GAC GAC AAC GAC
38490 GTC * 8 22/24 GTC GTC GTC GTC GTC GTC GTT GTG
47667 CAT * 8 22/24 CAT CAT CAT CAC CAT CAT CAT CAA
71598 TGC * 9 25/27 TGC TGC TGC TGC TGC TGC TGC TTC TGT
73201 GTT * 7 19/21 GTT GTT GTC GTT GTC GTT GTT
74007 CTG * 7 19/21 CTG CTT CTG CTG CTG TTG CTG
75707 TGT * 7 20/21 TGT CGT TGT TGT TGT TGT TGT
91311 TGC * 10 28/30 TGC TGC TGC TGC TGC TGC TGC TGA TGC TGA
92098 GTT * 8 22/24 GTT GTT GTT GTT GCT GTT GCT GTT
93250 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAG TCG
96533 GCA * 7 19/21 GCA GCG GCA GCA GCG GCA GCA
100063 AGG * 7 19/21 AGG AGG AGG AGC ACG AGG AGG
100611 GAT * 9 25/27 GAT TAT GAT GAT GAT GAC GAT GAT GAT
103882 CAA * 8 22/24 CAA CAA TAA CAA CAA TAA CAA CAA
104073 TTG * 13 36/39 TTG TTG TTG CCG TTG TTG TTG TTG TTG CTG TTG TTG TTG
105304 CTC * 13 36/39 CTC ATT CTC CTC CTC CTC CTC CTC CTC CTC CTC CAC CTC
109853 CAG * 7 20/21 CAG CAG CAG CAG CAG CGG CAG
110746 GCA * 17 46/51 GCA GCA ACA GCA ACA GCA GCA GCA GCA GCA GCA GCA GCA GCA ACA GCA GTT
115938 CTG * 10 27/30 CTG GTG CTG CTG TTG CTG CTG CTG CTG CTT
118085 GCA * 9 25/27 GCA GCA GCA ACA GCA GCA ACA GCA GCA
119861 GCC * 8 22/24 GCC GCC GTC GCC GCT GCC GCC GCC
121558 GCT * 7 19/21 GCT GCT GCT GCT GCT GTG GCT
126294 GTG * 8 22/24 GTG GTG CTG GTG GTG CTG GTG GTG
126319 TGG * 8 22/24 TGG TGG TGC TGG TGG TGC TGG TGG
148975 CAA * 10 29/30 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAC
150585 ATC * 7 19/21 ATC ATC ATT ATC ATC ATC ATG
150684 AAT * 8 22/24 AAT CAT AAT AAT AAT AAC AAT AAT
160918 CTG * 10 27/30 CTG TTG CTG CTG CTG CTG CTG CTG CGG CGG
163633 CTG * 11 31/33 CTG CTC CTG CTC CTG CTG CTG CTG CTG CTG CTG
176169 CTG * 7 19/21 CTG CTG CTG CTG CTG CTG CGA
183445 TCC * 18 49/54 TCC TCC TCC TGC TCC TCC TCC TCC TGC TCC TCC TCC TGC TCC TCC TCC TGT TCC
188616 CAG * 7 19/21 CAG GAG CAG CAG GAG CAG CAG
190847 GGA * 7 19/21 GGA AGA TGA GGA GGA GGA GGA
193795 TCA * 7 20/21 TCA TCA TCA ACA TCA TCA TCA
199781 GTG * 12 33/36 GTG GTG GTG GTG GTG GTG GTG GTA GTG GTG GCA GTG
200568 TGT * 8 22/24 TGT TGT TGT TGT TGG TGT TGG TGT
219654 TGT * 11 30/33 TGT TGT TGT TAT TGT TGC TGT TGT TGT TGT TTT
222282 GTT * 7 19/21 GTT GAT GTT GTT GTT GGT GTT
222665 TGT * 8 22/24 TGT TGT TGT TGT TGT TGC CGT TGT
223056 AAC * 10 27/30 AAC AAC AAC TGC AAC AAC AAC AAC AAC AAA
235550 ATT * 7 19/21 ATT GCT ATT ATT ATT ATT ATT
245029 TCA * 10 27/30 TCA TCG TCG TCA TCA TCA TCA TCA TCA CCA
258929 CCA * 7 19/21 CCA CTA CCA CCA CCT CCA CCA
269329 ATT * 7 19/21 ATT ATT ATT ATT ATT ATT TAT
269352 TAT * 13 36/39 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TGA AAT
284426 GCT * 8 22/24 GCT GCT GTT GCT GCT GTT GCT GCT
284452 TGC * 8 22/24 TGC TGC TGT TGC TGC TGT TGC TGC
284479 TGC * 7 19/21 TGC TGC TGT TGC TGC TGC TGG
288024 GCT * 7 19/21 GCT GCT GCA GCT GCG GCT GCT
292661 CCT * 7 19/21 CCT CCT CCT CCA CCT CCT CCA
293342 TGT * 8 22/24 TGT TGT TGT TGT TAT TGT TGT TGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 300919
Total number of repeats detected.............. 56
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 2 1 1 0 0 0 0 0 0 0 0 0 0
ATT 2 2 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 0 0 1 0 0 0 0 0 0 0 0 0
TTG 1 0 0 1 0 0 0 0 0 0 0 0 0
TGT 5 4 1 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 4 3 1 0 0 0 0 0 0 0 0 0 0
TCA 2 1 1 0 0 0 0 0 0 0 0 0 0
TCC 1 0 0 0 1 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 0 1 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 4 3 1 0 0 0 0 0 0 0 0 0 0
GTG 2 1 1 0 0 0 0 0 0 0 0 0 0
GTC 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 3 2 0 0 1 0 0 0 0 0 0 0 0
GCT 3 3 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 2 1 1 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 3 3 0 0 0 0 0 0 0 0 0 0 0
CTG 6 2 4 0 0 0 0 0 0 0 0 0 0
CTC 1 0 0 1 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 2 ATT + 0 TTA + 1 TAT = 4
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
2 AAC + 1 ACA + 2 CAA + 4 GTT + 1 TTG + 5 TGT = 15
0 ATG + 0 TGA + 1 GAT + 1 CAT + 1 ATC + 2 TCA = 5
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 1 GGA + 1 GAG + 1 CCT + 1 CTC + 1 TCC = 6
0 AGC + 3 GCA + 3 CAG + 3 GCT + 6 CTG + 4 TGC = 19
0 ACG + 0 CGA + 1 GAC + 0 CGT + 1 GTC + 0 TCG = 2
0 ACC + 1 CCA + 0 CAC + 0 GGT + 2 GTG + 1 TGG = 4
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7293394|gb|AE003507.1|AE003507 Drosophila melanogaster genomic scaffold 142000013386053 section 24 of 30, complete sequence
Position Repeat Coverage Repeat
12305 GCC * 7 19/21 GCC GCT GCC GCC GCC GCA GCC
22952 GCT * 7 19/21 GCT GCT GCT GCT GCT GGT GAT
23330 GTT * 7 19/21 GTT GTT GTT GTT GTT GTC GTC
35316 GTT * 7 19/21 GTT GTT GTT GTT GTT GCT GCT
57676 GCT * 7 20/21 GCT GCT GCT GCT GCT GCT GCC
64738 TAG * 8 22/24 TAG TAG TAG TAG TAG TGG TGG TAG
74435 TTG * 8 22/24 TTG TTG TTG TTG TTG TTG TTT TGG
75682 CTG * 7 19/21 CTG CTG CTG CAG CTG CAG CTG
78437 TGC * 7 19/21 TGC TGC TGC TGC AGT TGC TGC
80908 TCA * 7 19/21 TCA TCA TCA TCA TTA TCA TCT
86051 TGG * 11 30/33 TGG TTG TGG TGG TGG TGG TGG TGG TAG TGA TGG
86257 TGC * 7 19/21 TGC TGT TGC AGC TGC TGC TGC
86308 TGC * 11 30/33 TGC TGC TGC TGC TGC TGC TGT TGC TGC TGT TGG
99625 CAT * 7 19/21 CAT CAT CAT CAT CAT CGT CGT
105477 AGC * 8 22/24 AGC AGC AAC AGC AGC AGT AGC AGC
107317 TGC * 8 22/24 TGC TGC TGC TGG TGC TGC TGC TTC
121925 CTG * 8 22/24 CTG GTG CTG CTG CTG TTG CTG CTG
128575 CTA * 7 19/21 CTA CGA CCA CTA CTA CTA CTA
128763 AAC * 7 19/21 AAC AAC AAC AAC AAC AAG AAG
131641 TGC * 8 22/24 TGC TGC TGC TGC TAC TGC TGC TGG
140397 GCT * 7 19/21 GCT GTT GCT ACT GCT GCT GCT
146071 GCA * 7 19/21 GCA GCA GCA GCA GCA ACA ACA
146201 GCA * 12 33/36 GCA GCA GCA GCA GCA GCA GCA GCA GCA ACA ACA ACA
146295 GCA * 7 19/21 GCA GCA GCA GCA GCT GCG GCA
146340 GCA * 8 22/24 GCA GCA CCA GCA GCA GCA ACA GCA
151805 TGC * 14 39/42 TGC TGC TGT TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TCG
152355 CTG * 7 19/21 CTG CTG CTG CTC CTG CTG CCG
152649 TGC * 7 19/21 TGC TGC TGC TGC TGC AGC TGG
155239 AGC * 7 19/21 AGC AGC AGC AGC AGC ACC AAC
160605 ACA * 7 19/21 ACA ACA ACA ACA ACA AAA AAA
182675 TGC * 7 19/21 TGC TGC TAC TGC TGC TGC TGT
197899 AGC * 7 19/21 AGC GGC AGC GGC AGC AGC AGC
208644 GCT * 8 22/24 GCT GCT GTT GCT GCT GCT GCT GTT
208700 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC TAC TGT
252126 CCT * 7 19/21 CCT CCT TCT CCT CCT CCT CCA
263987 GTC * 12 33/36 GTC GTC GTC GTC GTC GTC GTC GTC GTT GTC GTC TGC
267243 CAG * 8 22/24 CAG CAG CAG CGG CAG CGG CAG CAG
286302 TTG * 9 25/27 TTG TTG CTG CTG TTG TTG TTG TTG TTG
-----------------------------------------------------------------------------------------
Total sequence length......................... 297165
Total number of repeats detected.............. 38
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 3 3 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAG 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGG 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 9 7 1 1 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 2 2 0 0 0 0 0 0 0 0 0 0 0
GTC 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 4 3 1 0 0 0 0 0 0 0 0 0 0
GCT 4 4 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTA 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 3 3 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 1 ACA + 0 CAA + 2 GTT + 2 TTG + 0 TGT = 6
0 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 1 TCA = 2
0 AGT + 0 GTA + 1 TAG + 0 ACT + 1 CTA + 0 TAC = 2
0 AGG + 0 GGA + 0 GAG + 1 CCT + 0 CTC + 0 TCC = 1
3 AGC + 4 GCA + 1 CAG + 4 GCT + 3 CTG + 9 TGC = 24
0 ACG + 0 CGA + 0 GAC + 0 CGT + 1 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 1 TGG = 1
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7293355|gb|AE003506.1|AE003506 Drosophila melanogaster genomic scaffold 142000013386053 section 23 of 30, complete sequence
Position Repeat Coverage Repeat
6362 ATA * 18 50/54 ATA ATA ACA ATA ATA ATA ACA ATA ATA ATA ATA ATA TTA ATA ATA ATT ATA ATA
24874 GCT * 11 30/33 GCT GCT GCG GCT GCT GCT GCT GTT GCT GCT GCA
46439 GAG * 7 19/21 GAG GTG GTG GAG GAG GAG GAG
46742 GCA * 7 19/21 GCA GCA GCA GCA GTA GCA CCA
50352 GCA * 11 30/33 GCA TCA GCA CCA GCA GCA GCA GCA GCA GCA GGA
57001 AAT * 7 19/21 AAT ATT AAT AAT AAT ATT AAT
63953 TCA * 10 28/30 TCA TCA TCA TCA TCA TCA TCA TCA TTT TCA
76266 TGC * 7 19/21 TGC TGC TGC TGC TGT TGT TGC
87987 CGA * 7 19/21 CGA CGG CGA CGA CGA CGA CGT
90193 GGA * 8 23/24 GGA GGA GGA GGA GGA GGA GGA GTA
92312 CTT * 7 19/21 CTT CTT CTT TTT CTG CTT CTT
130723 AGC * 12 34/36 AGC AGG AGC AGC AGC AGC AGC AGC AGC AGC AGT AGC
138423 GTG * 9 25/27 GTG GTG GTG GTT GTG GTG GTG GTG GCG
141695 ACA * 11 31/33 ACA ACA ACA ATA ACA ACA ACA ACA AGA ACA ACA
142486 AAC * 8 23/24 AAC AAC AAC AAC AAC AAC AAC AAA
156944 TCC * 8 22/24 TCC TCC TCC TCT TCC TTC TCC TCC
159876 AAC * 7 19/21 AAC CAT AAC AAC AAC AAC AAC
164300 CAA * 7 20/21 CAA CAA CAA CAA CAA CAA CAC
164657 CAT * 7 20/21 CAT CAT CAC CAT CAT CAT CAT
166421 CAA * 7 19/21 CAA CAA CAA GAA CAA CAA CAT
169045 TCT * 9 25/27 TCT TCT TCT TCT TCT TCT TCG TCT TCC
187728 CAA * 8 22/24 CAA CAA CAA CAA CAA CAA CAA CCG
188180 AGC * 11 30/33 AGC AGC AGC AGC AGC AGC AGC AGC AGC GTC AAC
197899 GCA * 21 57/63 GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA ACA ACA GCA ACA GCA ACA TCA GCA GCT GCA
198944 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAA CAA
200263 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAC CAA
234051 CTC * 7 19/21 CTC CAG CTC CTC CTC CTC CTC
239090 GCT * 7 19/21 GCT GCT GCT GCT GCT GCT TCA
239117 TCT * 9 25/27 TCT TCT TCT TCT TCT TCT TCT TCC GCT
239251 AAC * 9 25/27 AAC AAC AAG AAC AAC AAC TAC AAC AAC
239341 GTT * 7 20/21 GTT GTT GTT GTT GTT GTT GCT
240404 GCA * 7 20/21 GCA GCA GCA GCA GCA ACA GCA
240846 TGT * 7 19/21 TGT TGT TGA TTT TGT TGT TGT
252372 GTT * 11 31/33 GTT GTT GTT GTT GTT GTA GTG GTT GTT GTT GTT
253782 TTG * 8 22/24 TTG TTG TTG TCG TTG TTG GTG TTG
258165 CAT * 10 27/30 CAT CAC CAT CAT CAT CAT CGT CAT CAT CGT
262178 CAT * 7 19/21 CAT GGT CAT CAT CAT CAT CAT
267734 CTG * 7 19/21 CTG CTG CTC CTG CTG CTC CTG
272937 GTT * 10 27/30 GTT GTT GTT GTT GTT ATT GTT GTT GTT GAG
273491 GCT * 7 20/21 GCT GTT GCT GCT GCT GCT GCT
282498 TCC * 7 20/21 TCC TCC TCC TCC TCC ACC TCC
292220 GGA * 8 22/24 GGA GGA GGA GGA GGA GGA GGA TCA
-----------------------------------------------------------------------------------------
Total sequence length......................... 300994
Total number of repeats detected.............. 42
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 3 3 0 0 0 0 0 0 0 0 0 0 0
ATA 1 0 0 0 1 0 0 0 0 0 0 0 0
AGC 2 0 2 0 0 0 0 0 0 0 0 0 0
ACA 1 0 1 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 1 0 1 0 0 0 0 0 0 0 0 0 0
TCT 2 2 0 0 0 0 0 0 0 0 0 0 0
TCC 2 2 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 3 1 2 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 2 2 0 0 0 0 0 0 0 0 0 0 0
GCA 4 2 1 0 0 1 0 0 0 0 0 0 0
GCT 3 2 1 0 0 0 0 0 0 0 0 0 0
CAA 3 3 0 0 0 0 0 0 0 0 0 0 0
CAT 3 2 1 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CGA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 2 TCT = 3
3 AAC + 1 ACA + 3 CAA + 3 GTT + 1 TTG + 1 TGT = 12
0 ATG + 0 TGA + 0 GAT + 3 CAT + 0 ATC + 1 TCA = 4
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 2 GGA + 1 GAG + 0 CCT + 1 CTC + 2 TCC = 6
2 AGC + 4 GCA + 2 CAG + 3 GCT + 1 CTG + 1 TGC = 13
0 ACG + 1 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 1 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7293335|gb|AE003505.1|AE003505 Drosophila melanogaster genomic scaffold 142000013386053 section 22 of 30, complete sequence
Position Repeat Coverage Repeat
13369 CAG * 7 19/21 CAG CAG CAG CAG CAA CAA CAG
25235 ATT * 7 19/21 ATT ATT ATT ATG ATT GTT ATT
28988 CAG * 8 22/24 CAG CAG AAG CAG CAT CAG CAG CAG
29015 CAG * 13 36/39 CAG CAG CAG CAC TAG CAG CAG CAG CAG CAG CAA CAG CAG
29254 GCA * 7 20/21 GCA GCA GCA GCA GCC GCA GCA
35089 CAG * 8 22/24 CAG CAG CAC CAG CAA CAG CAG CAG
35999 AGC * 7 19/21 AGC AGC ACC AGC AGC AAC AGC
36064 CAG * 14 38/42 CAG CAG CAG CAG CAG CAG CAA CAG CAA CAG CAG CAG CTG CAA
37030 ACC * 7 19/21 ACC ACC TCC ACC ACC ACT ACC
66522 CAG * 7 19/21 CAG CAG CAG CAG CAA CAA CAG
78010 TGC * 7 19/21 TGC TGC TGT TGC CGC TGC TGC
78741 CAG * 11 31/33 CAG CAG CAG CAG CAG CAG CAG CAA CAT CAG CAG
78959 GCA * 11 30/33 GCA GCA GCA GCA ACA GCA ACA GCA GCA ACA GCA
79202 CAA * 8 22/24 CAA TAA CAA CAA CAA TAA CAA CAA
79242 AAC * 9 25/27 AAC AAC AAC AAC AAC AAC AAC AAC AGT
79292 CAG * 7 19/21 CAG CGG CAA CAG CAG CAG CAG
83817 CAG * 9 25/27 CAG CAG CAA CAG CAG CAA CAG CAG CAG
149075 CCA * 11 31/33 CCA CCA CCA CCA CCA CCA CCA CCA CCA TCA TCA
161169 GCA * 7 19/21 GCA GCA GCA GCA CCA CCA GCA
161360 AGC * 7 19/21 AGC AGC AGC AGC ATC ACC AGC
161441 ACA * 7 20/21 ACA GCA ACA ACA ACA ACA ACA
161677 GCT * 7 19/21 GCT GCT GCT GCC GCG GCT GCT
161731 GCT * 7 19/21 GCT GCT GCC GCT GCA GCT GCT
213307 TTG * 8 22/24 TTG TGG CTG TTG TTG TTG TTG TTG
216117 GCA * 7 19/21 GCA GCA GCA ACA GCA ACA GCA
221490 CTG * 8 22/24 CTG CTG CAG CTG CTG GTG CTG CTG
221978 GCT * 7 19/21 GCT GCT GTT GCT GCT GCT GAT
227944 CTG * 7 19/21 CTG CTG CCG CAG CTG CTG CTG
228177 CTG * 15 41/45 CTG CTG CAG CTG CTG CTG CTG CTG CTG CTG CTG CTG GTG TCG CTG
240009 GAT * 17 46/51 GAT GAT GAT AAT GAT GTT GAT GAT GAT GAT GAT GAT GAG GAT GAT GGT GAC
273439 CAG * 8 22/24 CAG AAG CAG CAG CAG CAG CAG CCG
290772 AGC * 7 19/21 AGC AAC AGC CGC AGC AGC AGC
292710 GCA * 7 20/21 GCA GCA GCA GCA GCA GCA ACA
292733 GCA * 12 33/36 GCA GCA GCA GCA GCA GCA GCA GCA GCA ACA TCA ACA
294475 CTG * 8 22/24 CTG TTG CTG CTG CTG CTG CTG CGG
297661 GTT * 7 19/21 GTT GCT GTT GCT GTT GTT GTT
297765 TGC * 7 20/21 TGC TGC TGC TGC TGC TGC TGT
309860 CTG * 8 22/24 CTG TTG CGG CTG CTG CTG CTG CTG
-----------------------------------------------------------------------------------------
Total sequence length......................... 314113
Total number of repeats detected.............. 38
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 3 3 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
GAT 1 0 0 0 1 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 6 4 2 0 0 0 0 0 0 0 0 0 0
GCT 3 3 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 10 7 1 2 0 0 0 0 0 0 0 0 0
CTG 5 4 0 1 0 0 0 0 0 0 0 0 0
CCA 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 1 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 1 ACA + 1 CAA + 1 GTT + 1 TTG + 0 TGT = 5
0 ATG + 0 TGA + 1 GAT + 0 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
3 AGC + 6 GCA + 10 CAG + 3 GCT + 5 CTG + 2 TGC = 29
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
1 ACC + 1 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7293302|gb|AE003504.1|AE003504 Drosophila melanogaster genomic scaffold 142000013386053 section 21 of 30, complete sequence
Position Repeat Coverage Repeat
29960 GTT * 8 22/24 GTT GTT GTT GCT GAT GTT GTT GTT
54892 TTA * 8 22/24 TTA TTA TAA TTT TTA TTA TTA TTA
54922 TTG * 7 19/21 TTG TAG TTG TTG CTG TTG TTG
67039 CAT * 7 20/21 CAT CAT CAT CAT CAT CAT CGT
94736 TAT * 7 20/21 TAT TAT TAT TAT TGT TAT TAT
137055 TGT * 7 19/21 TGT TGT TGC TGT TGT TGT TGC
139162 GCT * 10 27/30 GCT GCT GCT GCT GCT GCT GCT GCT TAT GCG
147811 TCC * 11 30/33 TCC TGC TCC TCC TCC TCC TCC TCC CCC TCA TCC
148684 GTG * 7 20/21 GTG GTG GTT GTG GTG GTG GTG
148852 GTG * 7 19/21 GTG CTG GTG GTG GTG GTT GTG
149907 CTC * 10 27/30 CTC CTC CTC CTC CTC CTC CTC CTC CCA GTC
152868 AAT * 7 19/21 AAT AAT GAT AAT AAT AAT ATT
169941 TTG * 7 20/21 TTG TTG TTG TTG TTG CTG TTG
170119 CAA * 7 19/21 CAA CAA CAA CAA CAA CAA ACA
184973 ATG * 17 47/51 ATG ATG ATG CTG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG AAT ATG AGG
188791 AGC * 8 22/24 AGC AGC ATC AGC AGC AGC ACC AGC
193080 ACA * 8 23/24 ACA ACG ACA ACA ACA ACA ACA ACA
222780 AAC * 8 22/24 AAC AAC AAC AGC AAC AAG AAC AAC
239625 TTG * 7 19/21 TTG TGG TAG TTG TTG TTG TTG
254761 GCA * 9 25/27 GCA GCT GCA GCA GCA GCA ACA GCA GCA
256242 GCA * 7 19/21 GCA GCA ACA TCA GCA GCA GCA
274333 GTG * 7 19/21 GTG GTG CTG GTG GTG GTG CTG
284427 GGT * 7 19/21 GGT GGT GGT GGC GGT GGA GGT
288133 GCC * 8 22/24 GCC GCC GCC GCC TCC ACC GCC GCC
288274 GCC * 8 22/24 GCC GCC GCC TCC ACC GCC GCC GCC
-----------------------------------------------------------------------------------------
Total sequence length......................... 298536
Total number of repeats detected.............. 25
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 0 0 0 1 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 3 3 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TCC 1 0 1 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 3 3 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
GCT 1 0 1 0 0 0 0 0 0 0 0 0 0
GCC 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 1 TAT = 3
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 1 ACA + 1 CAA + 1 GTT + 3 TTG + 1 TGT = 8
1 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 1 TCC = 2
1 AGC + 2 GCA + 0 CAG + 1 GCT + 0 CTG + 0 TGC = 4
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 1 GGT + 3 GTG + 0 TGG = 4
0 GGC + 0 GCG + 0 CGG + 2 GCC + 0 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7293251|gb|AE003503.1|AE003503 Drosophila melanogaster genomic scaffold 142000013386053 section 20 of 30, complete sequence
Position Repeat Coverage Repeat
6311 CAC * 8 22/24 CAC CAC CAC CAC CAC CAC GAC AAC
11085 TCA * 7 19/21 TCA TCA TCA TCA TCA TAA TCG
46496 ACA * 7 19/21 ACA ACA ACA GCA ACA ACT ACA
59210 AAC * 12 33/36 AAC AAC GAG AAC AAC AAC AAC AAC AAC AAC ATC AAC
86476 CAA * 8 22/24 CAA TAA GAA CAA CAA CAA CAA CAA
113481 TCT * 8 22/24 TCT GAT TCT TCT TCT TCT TCT TCT
114065 ACA * 7 19/21 ACA AAA ACA ACA ACA ACA AAA
117224 TGC * 8 23/24 TGC TGA TGC TGC TGC TGC TGC TGC
125133 TGC * 9 25/27 TGC TGC TGC TGC TGC TGA TGT TGC TGC
161303 GCA * 8 22/24 GCA GCA GCA GCA GCA GCA GGA GGA
186275 AAC * 7 19/21 AAC AAC AAC AAC AAC AAC GAA
186471 CAA * 10 27/30 CAA CAG CAA CAA CAA CAA CAA CAG CAA CCA
205918 GTG * 7 19/21 GTG GTG GTG GTG ATG GTG GTT
210125 TGG * 9 25/27 TGG AAG TGG TGG TGG TGG TGG TGG TGG
212150 GTT * 7 19/21 GTT GTT GTT GTT GCT GCT GTT
212214 TTG * 8 22/24 TTG TTG TTG TTG TTG CTG TTG CTG
220379 TTG * 7 19/21 TTG GTG TTG TTG TTG TTG TTT
226288 CAT * 8 22/24 CAT CAT CAT CAT CAA CAT AAT CAT
235877 TAT * 7 19/21 TAT TAT AAT TAT CAT TAT TAT
254013 AAT * 8 22/24 AAT AAT AAT AGA AAT AAT AAT AAT
261967 TGC * 8 22/24 TGC CGC TGC TGC TGC TGC TGT TGC
262837 CAA * 9 25/27 CAA CAA CAA CAA CAA CAA CAA CAA AAG
263927 ATC * 14 40/42 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATT ATC ATC ATC ATG
266762 CTT * 7 19/21 CTT CTT CTT CTT CTT CTA ATT
273351 TAA * 11 30/33 TAA CAA TAA TAA TAA TAA TAA TAA TAA TGT TAA
275725 CAA * 8 22/24 CAA CAA CTA CAA CAA CAG CAA CAA
275817 ACA * 11 30/33 ACA ACA ACA ACA ACA ACA ACA ACA ACA GCG ATA
292573 ATA * 8 23/24 ATA ATA ACA ATA ATA ATA ATA ATA
298984 GCC * 9 25/27 GCC GCC GCC GCC GCA GCC GCC GCC GCT
-----------------------------------------------------------------------------------------
Total sequence length......................... 300310
Total number of repeats detected.............. 29
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 2 1 1 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 0 0 1 0 0 0 0 0 0 0 0 0
ACA 3 2 1 0 0 0 0 0 0 0 0 0 0
TAA 1 0 1 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 3 3 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
TCT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 4 3 1 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 1 ATA + 1 TAA + 0 ATT + 0 TTA + 1 TAT = 4
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 1 TCT = 2
2 AAC + 3 ACA + 4 CAA + 1 GTT + 2 TTG + 0 TGT = 12
0 ATG + 0 TGA + 0 GAT + 1 CAT + 1 ATC + 1 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 1 GCA + 0 CAG + 0 GCT + 0 CTG + 3 TGC = 4
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 1 CAC + 0 GGT + 1 GTG + 1 TGG = 3
0 GGC + 0 GCG + 0 CGG + 1 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7293211|gb|AE003502.1|AE003502 Drosophila melanogaster genomic scaffold 142000013386053 section 19 of 30, complete sequence
Position Repeat Coverage Repeat
3825 GCA * 8 22/24 GCA GCA CCA GCA GCA GCA ACA GCA
3850 CAG * 7 19/21 CAG CAA CAA CAG CAG CAG CAG
3897 GCA * 7 19/21 GCA ACA GCA GCA GCA GCA ACA
4926 CAG * 7 19/21 CAG CAG CAG CAC CAG CAG CTG
4957 ACG * 7 19/21 ACG ACG ACG ACG ACG GCG ATG
28491 GGT * 7 19/21 GGT GGT GGT GGT GGT GCC GGT
40238 CAT * 9 25/27 CAT CAT CAT CAT CAT CAT CAT CAT CGA
88030 CAA * 7 19/21 CAA CAG CGA CAA CAA CAA CAA
88051 CAG * 7 19/21 CAG CAG CAG TAG CAG CAG CCG
90510 CAA * 7 19/21 CAA CAA CAA AAG CAA CAA CAA
90631 CGA * 8 22/24 CGA CGA CGA CGA CGA CGA TGA AGA
94394 CAG * 11 31/33 CAG CAG CAG CAG CAA CAG CAG CAG CAG CAG CAT
99926 CAA * 7 19/21 CAA CAA CAA CAA CAA CAA CTC
101380 CAG * 10 28/30 CAG CAG CAG CAG CAG CAG CAG CAG CCG CCG
110290 TCC * 8 22/24 TCC TCT TCC TCC TCC TCA TCC TCC
113724 CGC * 8 22/24 CGC CGA CAC CGC CGC CGC CGC CGC
115275 GCG * 7 19/21 GCG GCG TCG GCG GCA GCG GCG
116945 GGA * 11 30/33 GGA GGA GGA GGA GGA GGA GGA GGA TGA TGA TGA
124280 GTT * 10 27/30 GTT TTT GTT GTT GTT GTT GTT GTT TTT TTT
128286 TTG * 7 19/21 TTG ATG TGG TTG TTG TTG TTG
128675 GCT * 8 22/24 GCT GCT GCT GCT GCT GCT GCC GCC
148854 GTT * 7 20/21 GTT GTT GTT GTT GTT GTT GGT
188291 CTC * 8 22/24 CTC CTC GTC ATC CTC CTC CTC CTC
188372 CTC * 12 33/36 CTC CTC CTT CTC CTC CTC CTC CTC CTC CTC CTT CTT
192155 TTG * 7 19/21 TTG TGG TTG TTG TTG CTG TTG
192254 TGT * 7 20/21 TGT TGT TGT TGT TGT GGT TGT
192293 TGT * 8 23/24 TGT TGT TGT AGT TGT TGT TGT TGT
224567 GCT * 7 19/21 GCT GCT GCT GCT GCT GCT GTG
230362 ATC * 7 19/21 ATC TTC TTC ATC ATC ATC ATC
230765 GTG * 8 22/24 GTG GTG TTG GTG ATG GTG GTG GTG
230996 CTC * 18 49/54 CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTT CTC CTC CGA TCC
233062 TGC * 7 19/21 TGC TGC TGC TGC TGT TGC TCC
265122 GAG * 8 22/24 GAG GAG GAG GAG GAG GAA GAG GAT
266476 AAT * 8 22/24 AAT AAT AAT AAT AAT AAT AAC AAC
270312 CAC * 7 19/21 CAC CAC CAG CAC CAG CAC CAC
275864 TGT * 7 19/21 TGT TGT TGT TGT TGT TTC TGT
276885 CAG * 9 26/27 CAG CAG CAG CAG CAG CAG CAA CAG CAG
280930 GTG * 7 19/21 GTG GTG GTG GTG GTG GTA GAG
285651 CAT * 8 22/24 CAT CAT CAT CAT CAT CAT CGT CGT
286597 CCT * 7 19/21 CCT CCT CCT CCT CCT CCG CCA
289382 ACT * 8 23/24 ACT ACT ACT ACT ACC ACT ACT ACT
299846 ACG * 10 27/30 ACG ACG ACG ATG ACG ACG ACG ACG ACA ACA
300932 TGC * 8 22/24 TGC TAT TGC TGC TGC TGC TGC TGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 301929
Total number of repeats detected.............. 43
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACT 1 1 0 0 0 0 0 0 0 0 0 0 0
ACG 2 1 1 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGT 3 3 0 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 2 1 1 0 0 0 0 0 0 0 0 0 0
GTG 2 2 0 0 0 0 0 0 0 0 0 0 0
GGA 1 0 1 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 3 3 0 0 0 0 0 0 0 0 0 0 0
CAT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 6 4 2 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 3 1 1 0 1 0 0 0 0 0 0 0 0
CGA 1 1 0 0 0 0 0 0 0 0 0 0 0
CGC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 3 CAA + 2 GTT + 2 TTG + 3 TGT = 10
0 ATG + 0 TGA + 0 GAT + 2 CAT + 1 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 1 ACT + 0 CTA + 0 TAC = 1
0 AGG + 1 GGA + 1 GAG + 1 CCT + 3 CTC + 1 TCC = 7
0 AGC + 2 GCA + 6 CAG + 2 GCT + 0 CTG + 2 TGC = 12
2 ACG + 1 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 3
0 ACC + 0 CCA + 1 CAC + 1 GGT + 2 GTG + 0 TGG = 4
0 GGC + 1 GCG + 0 CGG + 0 GCC + 0 CCG + 1 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7293176|gb|AE003501.1|AE003501 Drosophila melanogaster genomic scaffold 142000013386053 section 18 of 30, complete sequence
Position Repeat Coverage Repeat
51581 GAC * 9 25/27 GAC GAT GAC GAT GAC GAC GAC GAC GAC
64877 TGC * 7 19/21 TGC TGC TGC TGC TGC TGT TGT
68778 TCA * 14 39/42 TCA TCG TCA TCA TCG TCA TCA TCA TCA TCA TCA TCA TCA GCA
71086 ACA * 14 38/42 ACA ACA AAA ACA AAA ACA ACA ACA ACA ACA ACA ACA AAA AGA
74191 TGC * 8 23/24 TGC TGC TGC TGC TGC TGC TGT TGC
81197 ACG * 8 22/24 ACG ACG GCG ACG ACG ACG GCG ACG
82270 GTT * 7 19/21 GTT GTT GTT GTA GTT GTT GCT
85827 CGG * 11 30/33 CGG CGG CGG CAG CAG CGG CGG CGG CGG CGG CAG
86663 TTA * 11 30/33 TTA ATA TTA TTA TTA TTG TTA TTA TTA TTA TTG
88809 TGC * 7 19/21 TGC TGA TGC TGC TGC TGC TGA
89032 TAT * 12 34/36 TAT TGT TAT TGT TAT TAT TAT TAT TAT TAT TAT TAT
90865 CAC * 11 31/33 CAC CAC CAC CAC CAC CAC CAG CAT CAC CAC CAC
91701 TGC * 7 19/21 TGC TGT TGC TGT TGC TGC TGC
109107 CAA * 7 20/21 CAA CAA CAA AAA CAA CAA CAA
115653 AAC * 7 19/21 AAC AAA AAC AAC AAC AAC AGC
119611 ATA * 7 19/21 ATA ATA ATA ATA AGA AAA ATA
132250 CGG * 10 27/30 CGG CTG CGG CGG CGA CGG CGG CGG CGG CAG
134478 CGC * 7 20/21 CGC CGC CGC CGC CGC CGC CGA
144179 TGT * 7 20/21 TGT TGT TGT TGC TGT TGT TGT
145797 CAT * 7 19/21 CAT CAT CAT CAT CAT CAT GGT
146073 CTT * 11 30/33 CTT CTT CTT CTT CTT CTT CTT CTT TGT CTT ATT
165226 GTT * 10 28/30 GTT GTT GTT GTT GTT GTT GTT ATT GTT GCT
170213 TTG * 7 19/21 TTG TTG TTG TTG TTG TTC TTT
197190 TGC * 7 19/21 TGC TGC TGC TGT TGC TGC TGT
197228 CTG * 10 27/30 CTG CTG TTG CTG CTT CTG CTG CTG CTG TTG
201272 GCT * 8 24/24 GCT GCT GCT GCT GCT GCT GCT GCT
202847 GGT * 13 36/39 GGT GCT GCT GGT GGT GGT GGT GGT GGT GGT GGT GGT GTT
208202 ATT * 11 30/33 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT GCG
244585 GAG * 7 19/21 GAG AAG GAG AAG GAG GAG GAG
259713 GGC * 7 19/21 GGC GGA GGC GGC GGC GGC GGT
260369 GGC * 7 19/21 GGC GGA GGC GGC GGC GGC GGT
-----------------------------------------------------------------------------------------
Total sequence length......................... 300191
Total number of repeats detected.............. 31
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 1 0 1 0 0 0 0 0 0 0 0 0 0
ACA 1 0 0 1 0 0 0 0 0 0 0 0 0
ACG 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 0 1 0 0 0 0 0 0 0 0 0 0
TTA 1 0 1 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 5 5 0 0 0 0 0 0 0 0 0 0 0
TCA 1 0 0 1 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 2 1 1 0 0 0 0 0 0 0 0 0 0
GGT 1 0 0 1 0 0 0 0 0 0 0 0 0
GGC 2 2 0 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAC 1 0 1 0 0 0 0 0 0 0 0 0 0
CTT 1 0 1 0 0 0 0 0 0 0 0 0 0
CTG 1 0 1 0 0 0 0 0 0 0 0 0 0
CGG 2 0 2 0 0 0 0 0 0 0 0 0 0
CGC 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 1 ATT + 1 TTA + 1 TAT = 4
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 1
1 AAC + 1 ACA + 1 CAA + 2 GTT + 1 TTG + 1 TGT = 7
0 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 1 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 1
0 AGC + 0 GCA + 0 CAG + 1 GCT + 1 CTG + 5 TGC = 7
1 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 2
0 ACC + 0 CCA + 1 CAC + 1 GGT + 0 GTG + 0 TGG = 2
2 GGC + 0 GCG + 2 CGG + 0 GCC + 0 CCG + 1 CGC = 5
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7293108|gb|AE003500.1|AE003500 Drosophila melanogaster genomic scaffold 142000013386053 section 17 of 30, complete sequence
Position Repeat Coverage Repeat
7874 AGG * 8 22/24 AGG AGG CGG AGG AGG AGG AGG AGC
17282 GAC * 7 19/21 GAC GAC GAC GAT GAT GAC GAC
37464 CCA * 10 27/30 CCA CCA CCA CCA GAA CCA CCA CCA CCA CCG
95583 AAT * 11 30/33 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT TGC
102692 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC TCT TGC
111845 AGC * 12 34/36 AGC AGC CGC AGC AGC AGC CGC AGC AGC AGC AGC AGC
112034 CCA * 11 30/33 CCA CGC CCA CCA CCA CCA CCA CCA CCA TCA CCA
112158 CAG * 10 27/30 CAG CAG CAA CAG CAG CAG CAA CAG CAG CAA
112190 GCA * 12 33/36 GCA GCA ACA GCA GCA GCA GCA GCA GCA ACA GCA GCG
142418 TGC * 10 27/30 TGC TGC TGC TGC TGC GAC TGC TGC TGC TGA
142723 CTG * 7 19/21 CTG TTG CTG TTG CTG CTG CTG
173720 TGC * 10 27/30 TGC TAA TGC TGC TGC TGC TGC TGC TGC TAC
174598 TGT * 7 19/21 TGT TGT TGT TGT TGC TGC TGT
175954 CGT * 7 19/21 CGT CGC CGT CGT CGT CGT CGC
177076 CTT * 7 19/21 CTT CTT CGC CTT CTT CTT CTT
177556 ACG * 7 19/21 ACG ACG ACG ACG ACG ACG AAT
199172 GGT * 7 19/21 GGT GGT GGT GGC GGC GGT GGT
202293 CAG * 10 28/30 CAG CAG CAG CAG CAG CAG CAG CAG CAT CCG
211815 TCG * 7 19/21 TCG TCG TCA TCT TCG TCG TCG
233388 GCA * 14 38/42 GCA GCA GCA GCA ACA GCA GCA GCA GCA GCA GGT GCA GCA GCG
238895 CTG * 7 19/21 CTG CCG CCG CTG CTG CTG CTG
239143 TGC * 14 39/42 TGC GGA TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGA TGC
240520 TTG * 18 50/54 TTG TTG TTG TTG TTG TTG TTG TTT TAG TTG TTG TCG TTG TTG TTG TTG TTG TTT
245982 AAT * 7 19/21 AAT AAT AAT AAT AAA AAA AAT
268275 CCA * 10 27/30 CCA CCG CCA CCA CCA CCA CCA CCG CCA CCT
270868 CAT * 7 19/21 CAT CAT TAT CCT CAT CAT CAT
280470 TAA * 7 19/21 TAA TAT TAA TAA TAA TAA TAT
295324 ATC * 8 22/24 ATC ATC ATC ATC ATC AAC ACC ATC
295348 TCA * 8 22/24 TCA TCA TCA TCA ACA TCG TCA TCA
-----------------------------------------------------------------------------------------
Total sequence length......................... 327311
Total number of repeats detected.............. 29
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 2 1 1 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 0 1 0 0 0 0 0 0 0 0 0 0
ACG 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 0 0 0 1 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 4 1 2 1 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 0 1 1 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 0 2 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 2 2 0 0 0 0 0 0 0 0 0 0 0
CGT 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 3 0 3 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
2 AAT + 0 ATA + 1 TAA + 0 ATT + 0 TTA + 0 TAT = 3
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 1
0 AAC + 0 ACA + 0 CAA + 0 GTT + 1 TTG + 1 TGT = 2
0 ATG + 0 TGA + 0 GAT + 1 CAT + 1 ATC + 1 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 1
1 AGC + 2 GCA + 2 CAG + 0 GCT + 2 CTG + 4 TGC = 11
1 ACG + 0 CGA + 1 GAC + 1 CGT + 0 GTC + 1 TCG = 4
0 ACC + 3 CCA + 0 CAC + 1 GGT + 0 GTG + 0 TGG = 4
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7293065|gb|AE003499.1|AE003499 Drosophila melanogaster genomic scaffold 142000013386053 section 16 of 30, complete sequence
Position Repeat Coverage Repeat
16456 GCT * 7 19/21 GCT GCT GAT GGT GCT GCT GCT
17292 TGT * 8 22/24 TGT TTT TAT TGT TGT TGT TGT TGT
17317 GTT * 12 33/36 GTT GGT GTT GCT GTT GTT GTT GTT GTT GTT GGT GTT
21372 GCT * 12 33/36 GCT GCT GCT GCT GCT GCT GCT CCT GCT GAT GCT GAT
36384 TGT * 8 22/24 TGT TGT TGT TGT TGT TAT TGT TGG
39456 CAC * 7 19/21 CAC CAC CAC CAC CAC CGC CCC
42600 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAT CAT
43578 AAG * 7 19/21 AAG AAG TAG ATG AAG AAG AAG
59762 CTC * 8 22/24 CTC CAC CTC CTC CTC CTC CTC GTC
82770 TAA * 7 20/21 TAA TAA TAA AAA TAA TAA TAA
87829 ATG * 8 23/24 ATG ATG ATG ATG ATG ATG ATA ATG
88809 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC TGC TAT
108950 TCC * 10 27/30 TCC TCC TCC TCT TCC TCC TCC TCC TCG TCT
132774 CAT * 17 47/51 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT TCC CAT CAG
133709 ATA * 8 22/24 ATA ACA ATA ATA ATA ATA ATA AAA
135636 GGT * 15 41/45 GGT GGT GGT GGT GGT GGT GGT GTT GTT GGT GGC GGT GGT GGT GCT
140710 TCA * 8 23/24 TCA TCG TCA TCA TCA TCA TCA TCA
142639 AGA * 7 19/21 AGA ACA AGA AGA AGA AGT AGA
181970 CTG * 7 19/21 CTG CTG TTG CTG TTG CTG CTG
204792 CTG * 10 27/30 CTG CTG CTG CTG CTG CTG TTG CTG CTT CTT
209322 TGA * 7 20/21 TGA TGA TGA TGA TGA TGA TGT
216161 CAA * 9 25/27 CAA CAG CGA CAA CAA CAA CAA CAA CAA
216446 ACA * 7 19/21 ACA CCA ACA ACT ACA ACA ACA
216470 ACA * 7 19/21 ACA ACT ACA ACA ACA ACT ACA
216519 GTT * 7 19/21 GTT GTT GTT GTT CTT GTT GCT
222354 ATA * 10 28/30 ATA ATA ATA ATA ATA ATA ATA ATA ATG AGA
237789 CAA * 8 22/24 CAA CAA CAA CAA CAA ACA CAA CAA
244531 CCT * 8 22/24 CCT GCT CCT CCT CCT CCT ACT CCT
246083 CCT * 8 22/24 CCT CCT CCT CAT CCT CTT CCT CCT
246985 CTC * 13 36/39 CTC CTC CTC CTC CTC CGC CTC CTC CTC CTC CTT CTG CTC
254547 CAG * 8 23/24 CAG CAG CAG CAG CAG CAG CAG CGG
254640 AGG * 11 30/33 AGG AGG AGG AGG AGG AGG AGG AGG AAA TGG AGG
254836 CTG * 7 19/21 CTG CTG CTT CTT CTG CTG CTG
274453 ATT * 15 41/45 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATG GTT GTT GTT
279361 TTA * 7 19/21 TTA CTA TGA TTA TTA TTA TTA
283628 GGT * 9 25/27 GGT GGT GGT GGT GGT GGT GTT GGT GGC
287615 CCA * 12 33/36 CCA CGA CCA CCA CCA CCA CCA CCA CTA CCA CCA TCA
287752 ACC * 7 19/21 ACC ACC ACC GCC ACC AGC ACC
-----------------------------------------------------------------------------------------
Total sequence length......................... 301550
Total number of repeats detected.............. 38
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 2 1 1 0 0 0 0 0 0 0 0 0 0
ATT 1 0 0 1 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGA 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 1 0 1 0 0 0 0 0 0 0 0 0 0
ACA 2 2 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
TCC 1 0 1 0 0 0 0 0 0 0 0 0 0
GTT 2 1 1 0 0 0 0 0 0 0 0 0 0
GGT 2 1 0 1 0 0 0 0 0 0 0 0 0
GCT 2 1 1 0 0 0 0 0 0 0 0 0 0
CAA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAT 1 0 0 0 1 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 3 2 1 0 0 0 0 0 0 0 0 0 0
CTC 2 1 0 1 0 0 0 0 0 0 0 0 0
CCA 1 0 1 0 0 0 0 0 0 0 0 0 0
CCT 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 2 ATA + 1 TAA + 1 ATT + 1 TTA + 0 TAT = 5
1 AAG + 1 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 2
0 AAC + 2 ACA + 2 CAA + 2 GTT + 0 TTG + 2 TGT = 8
1 ATG + 1 TGA + 0 GAT + 1 CAT + 0 ATC + 1 TCA = 4
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 0 GAG + 2 CCT + 2 CTC + 1 TCC = 6
0 AGC + 0 GCA + 2 CAG + 2 GCT + 3 CTG + 1 TGC = 8
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
1 ACC + 1 CCA + 1 CAC + 2 GGT + 0 GTG + 0 TGG = 5
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7293037|gb|AE003498.1|AE003498 Drosophila melanogaster genomic scaffold 142000013386053 section 15 of 30, complete sequence
Position Repeat Coverage Repeat
3142 GGA * 7 19/21 GGA GGA GGA GCA GGA GGC GGA
6063 AAC * 17 47/51 AAC TAC AAC AAC AAC AAC AAC AAC AAC TAC TAC AAC AAC AAC AAC AAC AAA
15258 ACA * 8 22/24 ACA ACA ACA GCA ACA ACA ACC ACA
20496 CAG * 8 23/24 CAG CAG CCG CAG CAG CAG CAG CAG
52238 TGC * 9 25/27 TGC TGC TCC TGC TGC TGC TGC TGC TGG
62278 CAG * 15 41/45 CAG CAG CAG CAG CCG CAG CAG CAG CAG CAG CAG CAG CAG CAA CTT
66831 CAT * 7 19/21 CAT CAT CAT CTT CAT CAT GAT
70821 CAA * 7 19/21 CAA CAA TAA CAA CAA CAA AAA
87567 AGC * 7 19/21 AGC AAC AGC AAC AGC AGC AGC
88064 CAC * 10 27/30 CAC TAC CAC CAC CAC CAC CAC CAC CAC CGA
89673 CCA * 7 19/21 CCA CCA CCG CCA CCA CCA CCG
104385 TGT * 8 22/24 TGT TGT TGT TGT TGC TGT TGT TCT
106493 ATA * 7 19/21 ATA ATA ATA ATA ATA ATT ATT
133597 CAG * 7 19/21 CAG GAG CAG CAG GAG CAG CAG
135297 AGC * 8 22/24 AGC AGC AGC AGC AGG AGC AGG AGC
155458 CAA * 8 22/24 CAA CAA GAA CAA CAA CAA CAG CAA
159497 AAC * 9 25/27 AAC AAC AAC AAC AAC AAC AAC AAC ACT
167195 CAA * 11 30/33 CAA CAA CAA CAA CAA CAA CAA CAC CAA CAG CAG
172374 GCA * 7 19/21 GCA GGA GCA GCA GCA GGA GCA
199875 AGC * 7 19/21 AGC AAC ATC AGC AGC AGC AGC
210012 TGA * 13 36/39 TGA TGA TGG TTA TGA TGA TGA TGA TGA TGA TGT TGA TGA
219302 TAT * 7 19/21 TAT TAT TAT TAC TAT TAT TAG
229554 TTG * 9 25/27 TTG CTG CTG TTG TTG TTG TTG TTG TTG
230374 CAC * 7 19/21 CAC CAC CAC CAT CAT CAC CAC
230395 AGC * 9 25/27 AGC AGC AGC AGC AGC AGC AGC AGC AAG
249095 GAT * 7 19/21 GAT GAG GAT GAC GAT GAT GAT
249855 TTC * 8 22/24 TTC TTC TTC TTT TCC TTC TTC TTC
261832 TTA * 7 19/21 TTA TTA TTA TTA GTA TTA TTT
261964 TGG * 12 33/36 TGG TGG TGG TGG TGG TGG TAG TGG TGG TTG TGG GGG
262152 CGC * 8 22/24 CGC TGC CGC CGC CGC CGC CGC CGT
281621 GTC * 8 22/24 GTC GCC GCC GTC GTC GTC GTC GTC
294371 GCA * 7 19/21 GCA GCA GCA GCA GCA ACA ACA
294592 CAG * 8 22/24 CAG CAG CAG CAG AAG CAG CAG CGG
312306 GTG * 7 19/21 GTG GTT GTG GTG GTG TTG GTG
-----------------------------------------------------------------------------------------
Total sequence length......................... 313384
Total number of repeats detected.............. 34
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 2 1 0 0 1 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 4 4 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TTC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 0 0 1 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTC 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 3 2 1 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 4 3 0 1 0 0 0 0 0 0 0 0 0
CAC 2 1 1 0 0 0 0 0 0 0 0 0 0
CGC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 1 TTA + 1 TAT = 3
0 AAG + 0 AGA + 0 GAA + 0 CTT + 1 TTC + 0 TCT = 1
2 AAC + 1 ACA + 3 CAA + 0 GTT + 1 TTG + 1 TGT = 8
0 ATG + 1 TGA + 1 GAT + 1 CAT + 0 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 1
4 AGC + 2 GCA + 4 CAG + 0 GCT + 0 CTG + 1 TGC = 11
0 ACG + 0 CGA + 0 GAC + 0 CGT + 1 GTC + 0 TCG = 1
0 ACC + 1 CCA + 2 CAC + 0 GGT + 1 GTG + 1 TGG = 5
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 1 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7293000|gb|AE003497.1|AE003497 Drosophila melanogaster genomic scaffold 142000013386053 section 14 of 30, complete sequence
Position Repeat Coverage Repeat
1946 TGC * 7 19/21 TGC TGC TGT TGC TGC TGT TGC
4490 GCT * 15 41/45 GCT GCT GAT GCT GAT GCT GCT GCT GCT GCT GCT GCT GGT GCT GTT
5061 TAT * 8 23/24 TAT TGT TAT TAT TAT TAT TAT TAT
5837 TGC * 22 60/66 TGC TGC TGC TGC TGC TGT TGC TGC TGC TGA TGT TGC TGC TGC TGC TGC TGC TGC TGC TGA TGC TCT
11121 CCT * 8 22/24 CCT CCT CCT CCT CCT CCT CCA CCA
16249 GCA * 7 19/21 GCA AAA GCA GCA GCA GCA GCA
30204 ATG * 11 31/33 ATG GGG ATG ATG ATG ATG ATG ATG ATG ATG ATG
36900 TTG * 11 30/33 TTG TTG TTG TTG TTG TTA TTA TTG TTG TTG TAG
37298 TTG * 7 19/21 TTG TTG TTG TTG TTG TTG CCG
39885 TGT * 8 22/24 TGT TGT TGT TGT TGC TGT TGC TGT
40721 TTG * 18 49/54 TTG TTG TTG TTG TTG TTG TTC TTG TTG TTG CTG TTG TTG TTG TAG TTG TTG CAG
42029 CTC * 11 30/33 CTC CTC CTC CTC CTC CTC CGC CTC CGC CTC CAC
44900 CAG * 8 22/24 CAG CCG CAG CAG CAG CAG CGG CAG
51934 TTG * 7 19/21 TTG TTG TTG TTG TGG TTG CTG
71516 TGA * 7 20/21 TGA TGA TGA AGA TGA TGA TGA
80946 TTA * 8 22/24 TTA TTA TTA TTA TTA TTA TTA TAC
89950 GCT * 8 22/24 GCT GCT GCT GCT GCG ACT GCT GCT
90196 ATT * 7 19/21 ATT ATT ATT ATT ATT ATT GCT
107156 ATC * 8 22/24 ATC ATC ATC ATC ATG ATC ATC GTC
149906 AGC * 7 19/21 AGC AGC AAC AAC AGC AGC AGC
149962 CAG * 7 19/21 CAG CAG CAA CAG CAG CAG CAA
173359 AGC * 9 25/27 AGC AGC AGC AGC AGC AGC AGA AGA AGC
173527 GTT * 7 19/21 GTT GTT GTT CTT GTT GTT GCT
180719 CAA * 10 28/30 CAA CAA CAA CGA CAG CAA CAA CAA CAA CAA
187087 CAG * 7 20/21 CAG CAG CAG CAG CAG CAG CAA
241835 TGC * 8 23/24 TGC TGC TGC TGC TGC TGC TGT TGC
268327 TGC * 8 22/24 TGC TGC TAC TGC TGC TGC TGC AGC
284066 TGG * 7 19/21 TGG TGG TAG TGG TGG TAG TGG
286278 TAA * 13 36/39 TAA TAA TAA TAA CAA TAA CAA TAA TAA TAG TAA TAA TAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 302494
Total number of repeats detected.............. 29
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 0 1 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TAA 1 0 0 1 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 4 2 1 0 1 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 4 3 0 0 0 0 1 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 2 1 0 1 0 0 0 0 0 0 0 0 0
CAA 1 0 1 0 0 0 0 0 0 0 0 0 0
CAG 3 3 0 0 0 0 0 0 0 0 0 0 0
CTC 1 0 1 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 1 ATT + 1 TTA + 1 TAT = 4
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 1 CAA + 1 GTT + 4 TTG + 1 TGT = 7
1 ATG + 1 TGA + 0 GAT + 0 CAT + 1 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 1 CCT + 1 CTC + 0 TCC = 2
2 AGC + 1 GCA + 3 CAG + 2 GCT + 0 CTG + 4 TGC = 12
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 1 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7292986|gb|AE003496.1|AE003496 Drosophila melanogaster genomic scaffold 142000013386053 section 13 of 30, complete sequence
Position Repeat Coverage Repeat
23278 CAA * 7 20/21 CAA CAA CAA CAA CAG CAA CAA
31789 TAT * 7 19/21 TAT TAT TAT TAT TAT TAT TGC
38768 AAC * 7 19/21 AAC TAC AAC AAC AAC ATC AAC
41188 CAA * 8 22/24 CAA CAA CAA CAA CAA CAA CAG CAG
62668 TTA * 10 28/30 TTA TTA TTA TTA TTG TTA TTA TTA TTA TTG
72879 GCA * 15 42/45 GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GAA GCA GCA GCA AAA
82724 GCT * 8 22/24 GCT GTT GCT GCT GCT CCT GCT GCT
82749 CTG * 10 27/30 CTG CTG CTG CTG CTG CTG CTG CTT CTT CTT
84607 GTT * 18 49/54 GTT GTT GTT GTT GTT GTT GTT GGT GGT GTT GTT GTT GTT GCT GTT GTT GGT GCT
87173 GCT * 8 23/24 GCT GCT GCT GCT GCT GCT GCT GTT
92274 GCG * 7 20/21 GCG GCG GCG GCG GCG GCG GTG
128073 ACC * 7 20/21 ACC ACC ACC ACC ACC ACC AAC
138616 TCA * 7 19/21 TCA TCC TCA TCA TCA TCT TCA
147782 TAT * 7 20/21 TAT TAT TAT TAT TAT TAT GAT
151918 GTG * 7 20/21 GTG GTG GTG GTG GTG TTG GTG
175202 AAG * 7 19/21 AAG AAG AAG AAG TAG AAG CAG
197379 TTA * 8 22/24 TTA TTA GTT TTA TTA TTA TTA TTA
209503 TAT * 7 19/21 TAT TAT TTT TAT TAT TAT TTT
221526 GCT * 10 27/30 GCT GCT GCT GCT GCT CCT GCT GCT GTT GTT
223301 CCA * 7 19/21 CCA CCC CCA CCC CCA CCA CCA
233760 TGC * 7 19/21 TGC TAC TGC TTC TGC TGC TGC
240404 GAT * 7 19/21 GAT GAG AAT GAT GAT GAT GAT
242462 TCG * 12 33/36 TCG TCA TCG TAG TCG TCG TCG TCG TCG TCG TCG GCG
242565 CTG * 11 30/33 CTG CTG TTG CTG TTG CTG CTG CTG CTG CTG TTG
244051 AGC * 14 39/42 AGC AGC AAC AGC AGC AGC AGC AGC AGC AGC AGC AAC TGC AGC
244334 TGC * 7 19/21 TGC TGC TGT TGC TGC TGC TGG
248284 CCA * 8 22/24 CCA CCA CCA CCA TCA CCA GCA CCA
264104 AAT * 7 19/21 AAT AAT AAT AAT AAT ATT ATT
264921 CGT * 9 25/27 CGT AGT CGT CGT CGT CGT CGT CGT CTT
-----------------------------------------------------------------------------------------
Total sequence length......................... 299357
Total number of repeats detected.............. 29
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 0 0 1 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 3 3 0 0 0 0 0 0 0 0 0 0 0
TTA 2 1 1 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
TCG 1 0 1 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 0 0 0 1 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 0 0 1 0 0 0 0 0 0 0 0 0
GCT 3 2 1 0 0 0 0 0 0 0 0 0 0
GCG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 2 2 0 0 0 0 0 0 0 0 0 0 0
CTG 2 0 2 0 0 0 0 0 0 0 0 0 0
CGT 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 2 TTA + 3 TAT = 6
1 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 1
1 AAC + 0 ACA + 2 CAA + 1 GTT + 0 TTG + 0 TGT = 4
0 ATG + 0 TGA + 1 GAT + 0 CAT + 0 ATC + 1 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 1 GCA + 0 CAG + 3 GCT + 2 CTG + 2 TGC = 9
0 ACG + 0 CGA + 0 GAC + 1 CGT + 0 GTC + 1 TCG = 2
1 ACC + 2 CCA + 0 CAC + 0 GGT + 1 GTG + 0 TGG = 4
0 GGC + 1 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7292953|gb|AE003495.1|AE003495 Drosophila melanogaster genomic scaffold 142000013386053 section 12 of 30, complete sequence
Position Repeat Coverage Repeat
35642 TTG * 9 25/27 TTG TTC TTG TTG CTG TTG TTG TTG TTG
37201 GCT * 7 19/21 GCT GCT GCG GCC GCT GCT GCT
60371 TTG * 8 22/24 TTG TTG TTA TTG TTG TTG TTG CTG
64040 GCT * 7 19/21 GCT GCT GCC GCT GCC GCT GCT
69137 CTC * 8 22/24 CTC CTG CTC CTC CTC CTC CTC CTG
69161 CTG * 12 33/36 CTG CTG CTG CTG CTG CTG CTG CTG CTA CTG CTG ACG
82249 GCA * 10 28/30 GCA GCA GCA GCA GCA GCA GCA ACA GCA ACA
89039 TTG * 7 19/21 TTG TTG TTG TTC TTG TTC TTG
93857 GGA * 9 25/27 GGA GGA GGA GGA GGA GGA GGA GCA GGG
93973 CCA * 7 20/21 CCA CCA CCA GCA CCA CCA CCA
94075 GCA * 8 23/24 GCA GCA GCA GCA ACA GCA GCA GCA
94408 GCA * 7 19/21 GCA GCC GCA ACA GCA GCA GCA
114995 GCA * 8 22/24 GCA ACA GCA GCA GCA GAA GCA GCA
134022 GCT * 7 19/21 GCT GCT GCT GCT GCT GCT TTT
134728 TAA * 8 22/24 TAA TAA TAA TAA TAA TAA TAT TTA
140898 CAA * 7 19/21 CAA CAG CAA CAA CAA CGA CAA
148613 TTG * 8 23/24 TTG TTG TTG TTG TTG TTG TTG TTT
151797 TTA * 7 19/21 TTA TTA TTA TTT TTA TTT TTA
160008 CAT * 7 20/21 CAT TAT CAT CAT CAT CAT CAT
230896 GCT * 8 22/24 GCT GTT GCT GTT GCT GCT GCT GCT
235571 TTG * 8 22/24 TTG TTG TTT TTG TTG TTG TTT TTG
260993 CTG * 9 26/27 CTG CTG CTG CTG CTG TTG CTG CTG CTG
275510 GAA * 7 20/21 GAA GAA GAA GAA GAA GAA GCA
293161 CTG * 7 19/21 CTG CTG CTG CTG CTG CTG GTT
293712 GCT * 8 22/24 GCT GCT GCT GCT GCT GCA CCT GCT
293825 TGC * 8 22/24 TGC TGC TGC TGC TGC TGT TGC TGT
294070 TGG * 7 19/21 TGG TGG TGG TGG TGG TGG CTG
297125 TCA * 8 22/24 TCA TTA TGA TCA TCA TCA TCA TCA
301609 CAT * 7 19/21 CAT CTT CAT CAT CAT CAG CAT
-----------------------------------------------------------------------------------------
Total sequence length......................... 308307
Total number of repeats detected.............. 29
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 5 5 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 4 3 1 0 0 0 0 0 0 0 0 0 0
GCT 5 5 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 2 2 0 0 0 0 0 0 0 0 0 0 0
CTG 3 2 1 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 0 ATT + 1 TTA + 0 TAT = 2
0 AAG + 0 AGA + 1 GAA + 0 CTT + 0 TTC + 0 TCT = 1
0 AAC + 0 ACA + 1 CAA + 0 GTT + 5 TTG + 0 TGT = 6
0 ATG + 0 TGA + 0 GAT + 2 CAT + 0 ATC + 1 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 2
0 AGC + 4 GCA + 0 CAG + 5 GCT + 3 CTG + 1 TGC = 13
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 1 CCA + 0 CAC + 0 GGT + 0 GTG + 1 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7292942|gb|AE003494.1|AE003494 Drosophila melanogaster genomic scaffold 142000013386053 section 11 of 30, complete sequence
Position Repeat Coverage Repeat
6187 TTG * 10 27/30 TTG TTG GTG TTG TTG ATG TTG TTG TTG GTG
6234 GTT * 15 41/45 GTT GTT ATT GTG GTT GTT GTT GTT GTT GTT GTT ATT GTT GTT ATT
6289 TAA * 7 19/21 TAA TAG TAG TAA TAA TAA TAA
7918 GCT * 7 19/21 GCT GCT GCT GTT GCT GCT GAT
13705 TCA * 8 22/24 TCA TCA TCA TCG TCA TCG TCA TCA
20971 TCG * 7 19/21 TCG TCG TCG TCG TCA TCG TCA
21074 TGT * 7 19/21 TGT TGT TGT TGT TGT TGC TGC
21099 GTT * 8 22/24 GTT GTT GTT GTT GTT ATT GTT ATT
21579 TGC * 7 19/21 TGC TGA TGC GGC TGC TGC TGC
22841 GCA * 11 31/33 GCA GCA GCA GCA GCA GCA GCA GCA ACA TCA GCA
25040 TAC * 7 19/21 TAC TAC TAC TAC TAC TAC TTG
31904 GCA * 12 33/36 GCA GCA GCA GCA GCA GCA GCA GCA ACA GCA ACT GCA
36690 GTT * 7 19/21 GTT GTT GTT GTT GCT GCT GTT
38435 AAT * 12 33/36 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT ATT AGC
40757 TGC * 8 22/24 TGC TGC TGC TGT TGC TGC TGT TGC
41423 TGC * 12 34/36 TGC TGC TGC TGC TGC TGC TAC TGT TGC TGC TGC TGC
41464 CTG * 7 19/21 CTG CTG CTG CTG CTA CTG TTG
42204 TAT * 7 19/21 TAT TAT TAT TAT TAT TTT TTT
43531 GCA * 7 19/21 GCA GCA ACT GCA GCA GCA GCA
45285 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC TGC GCC
45717 GCA * 14 38/42 GCA ACA GCA GCA GCA GCA GCA GCA GCA TCA GTA GCA GCA ACA
45992 CAA * 10 27/30 CAA CAA CAA TAA CAG CAA CAA CAA CAA CAG
46509 GCA * 8 23/24 GCA GCA GCA GCA GCA GCA GCA ACA
47034 TGC * 7 20/21 TGC TGT TGC TGC TGC TGC TGC
48625 GCA * 10 27/30 GCA GCA GCA GCA GCA GCA GCA GCA GCA AGT
51631 CAG * 10 27/30 CAG CGG CAG CAG CAG CAG CAG CAC CAG CAA
51885 TGC * 8 22/24 TGC TGA TGT TGC TGC TGC TGC TGC
55954 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CAT
57964 GCA * 10 27/30 GCA GCA GCA ACA GCG GCA GCA GCA GCA ACA
58129 AGC * 7 19/21 AGC AGC AGC AAC AGC AAC AGC
58366 GCA * 7 19/21 GCA GCA GCG GCA ACA GCA GCA
58468 CAA * 7 19/21 CAA CAA AAA CAG CAA CAA CAA
58492 CAA * 7 19/21 CAA CAA CAA CAG CAA CAT CAA
60518 TGC * 7 19/21 TGC TGC TGC TAC TGC CGC TGC
60701 TGC * 8 22/24 TGC TGT TGC TGC TGC TGC TGC CGC
61280 CAG * 12 33/36 CAG AAG CAG CAG CAG CAG CAA CAG CAG CAA CAG CAG
67945 TGT * 8 22/24 TGT TGC TGT TGT TGT TGC TGT TGT
69474 TTC * 9 25/27 TTC TTC TTC TTC TTA TTC TTC TTC TTT
70087 TGC * 13 36/39 TGC TGC TGC TGC TGC TGC TGC TGC CTC TGC TGT TGC TGC
72422 CAA * 7 19/21 CAA CAA CAA CAA CAG CAA GAA
75062 TTA * 8 23/24 TTA TTA TTA TTA TTA TTA TTA TGA
79986 ATG * 7 19/21 ATG ATG ATG AGG ATG GTG ATG
80769 ACG * 7 19/21 ACG ACG ATG ACG ACG ACA ACG
85201 TGA * 7 19/21 TGA TGA CGA TGA TGA TGA TGT
104396 GTT * 7 19/21 GTT GCT GTT CTT GTT GTT GTT
114515 TGA * 7 19/21 TGA TGA TGT TGA TGA TGA TGG
122151 TTG * 8 22/24 TTG TTG TTG GTG TTG TTG TTG ATG
122186 GTT * 7 19/21 GTT GTT GGT TTT GTT GTT GTT
122226 TTG * 11 31/33 TTG TGG TTG TTG TTG TTG TTG ATG TTG TTG TTG
122622 TTG * 11 32/33 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTC
122700 GTT * 11 30/33 GTT GTT GTG GTT GTT GTT GAT GTT GTT GTT CTT
122845 TGT * 7 19/21 TGT GGT TGT TGT TGT TGT TGA
125526 TGT * 10 27/30 TGT TGT TGT TGT TGT TGT TGC TGC TGT TGC
125777 CAG * 20 56/60 CAG CAA CAG CAG CAG CAG CAA CAG CAG CAG CAG CAG CAG CAG CAG CGG CAG CAG CAG CAC
130023 ACA * 11 30/33 ACA ACA ACA ACA ACA ACA ACA ACA ACA ACG AGT
133508 AAC * 7 19/21 AAC AAC AAC AAC AAC AGC AGC
133537 AGC * 7 19/21 AGC AGG AGC AGC AGC AGC AGA
166316 AAC * 11 30/33 AAC AAC AAC AAC AAC AAC AAC AAC AAC AGG GAC
166426 AGC * 12 33/36 AGC TGC AGC AGC AGC AGC AGC AGC AGC AAC TGC AGC
174920 CAA * 7 19/21 CAA CAA CAA CAA GAA CAA GAA
175101 ACA * 7 19/21 ACA ACA ACA GCA GCA ACA ACA
191545 ACA * 7 21/21 ACA ACA ACA ACA ACA ACA ACA
194064 GCA * 8 23/24 GCA GCA GCA GCA GCA GCA ACA GCA
194958 TGG * 7 19/21 TGG TGG TGG TGG TGG TGA TGC
195145 GCA * 11 30/33 GCA ACA ACA GCA GCA GCA GCA GCA GCA GCA ACA
195199 CAA * 7 19/21 CAA CAG CAA CAA CAA CAA CAT
198795 GCA * 7 19/21 GCA GCA GCA GCA GCA ACA TCA
199633 TCT * 9 25/27 TCT TCT TTT GCT TCT TCT TCT TCT TCT
200133 CTG * 7 20/21 CTG CTG CTG CTG CTG CTG TTG
200157 TGC * 7 19/21 TGC TTC TGC TGT TGC TGC TGC
201581 TGT * 7 19/21 TGT TGC TGT TGT TAT TGT TGT
209868 TCT * 7 19/21 TCT TCT TCT GCT TCT TCT TCG
217740 CAA * 10 27/30 CAA CAA CAA CAA CAG CAA CAA CAA CAA TCA
219254 TCG * 7 19/21 TCG TCG TCG TCC TCG TCC TCG
222332 ATA * 12 33/36 ATA ATA ATA ATA ATA AAA ATA ATA ATA ATA GTA ATT
245433 ATC * 8 22/24 ATC ATC ATC ATC ATC ATC ATT ATT
252410 TGT * 8 22/24 TGT TGT TTT TGT TGT TGT TGT TGC
262012 TGC * 7 19/21 TGC TGA TGG TGC TGC TGC TGC
274476 CAT * 7 19/21 CAT CAT CAT CGT CAT CGT CAT
274565 AGC * 10 27/30 AGC AGC AGC AGC CGC AGC AGC AGC GGC GGC
290307 CAT * 7 20/21 CAT CAT CAT CAT CAT CAT CTT
296488 CCT * 8 22/24 CCT CCT CCT CCT CCT CCT CTT CTT
-----------------------------------------------------------------------------------------
Total sequence length......................... 300080
Total number of repeats detected.............. 82
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 0 1 0 0 0 0 0 0 0 0 0 0
AAC 2 1 1 0 0 0 0 0 0 0 0 0 0
ATA 1 0 1 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 4 2 2 0 0 0 0 0 0 0 0 0 0
ACA 3 2 1 0 0 0 0 0 0 0 0 0 0
ACG 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TAC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 4 1 3 0 0 0 0 0 0 0 0 0 0
TTC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 2 2 0 0 0 0 0 0 0 0 0 0 0
TGT 6 5 1 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 11 9 1 1 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
TCT 2 2 0 0 0 0 0 0 0 0 0 0 0
TCG 2 2 0 0 0 0 0 0 0 0 0 0 0
GTT 6 4 1 1 0 0 0 0 0 0 0 0 0
GCA 11 5 5 1 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 7 5 2 0 0 0 0 0 0 0 0 0 0
CAT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 4 1 2 0 0 1 0 0 0 0 0 0 0
CTG 2 2 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 1 ATA + 1 TAA + 0 ATT + 1 TTA + 1 TAT = 5
0 AAG + 0 AGA + 0 GAA + 0 CTT + 1 TTC + 2 TCT = 3
2 AAC + 3 ACA + 7 CAA + 6 GTT + 4 TTG + 6 TGT = 28
1 ATG + 2 TGA + 0 GAT + 2 CAT + 1 ATC + 1 TCA = 7
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 1 TAC = 1
0 AGG + 0 GGA + 0 GAG + 1 CCT + 0 CTC + 0 TCC = 1
4 AGC + 11 GCA + 4 CAG + 1 GCT + 2 CTG + 11 TGC = 33
1 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 2 TCG = 3
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 1 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7292892|gb|AE003493.1|AE003493 Drosophila melanogaster genomic scaffold 142000013386053 section 10 of 30, complete sequence
Position Repeat Coverage Repeat
8927 TGT * 7 19/21 TGT TAT TGT TGT TGT TGT TGC
9692 TCT * 7 19/21 TCT TCT TCT TCT TCT TCT GGT
11383 CCT * 10 29/30 CCT CCT CCT CCT CCT CCT CCT CCT CCT CCG
24496 AAT * 10 27/30 AAT AAT AAT AAT CAT AAT AAT AAT CAT CAT
34386 GCA * 11 30/33 GCA GTT GCA GCA GCA GCA GCA GCA GCA GCA ACA
34778 GCA * 12 33/36 GCA GCA GCA GCA GCA GCA GCA TCT GCA ACA GCA GCA
34818 CAG * 7 19/21 CAG CGG CAG CAG CAA CAG CAG
34955 CAA * 7 19/21 CAA CAA TAA CAA CAT CAA CAA
34977 AAC * 11 31/33 AAC ATC AAC AAC AAC AAC AAC AAC AAC AAC ATC
35126 CTG * 7 19/21 CTG TTG CTG CTG CTG CTG TTG
38405 TCC * 7 19/21 TCC TCC TCC TCC TCT TCC TCT
38429 TCC * 11 30/33 TCC TCC TCC TCC TCT TCC TCC TCC TCT TCC TCT
38465 TCC * 15 41/45 TCC TCC TCT TCC TCC TCC TCC TCC TCC TCA TCC TCC TCG GCC TCC
46536 TTG * 7 19/21 TTG ATT TTG TTG TTG TTG TTG
59877 CTG * 8 22/24 CTG CTG CTG GTG CTG GTG CTG CTG
70124 CAA * 7 19/21 CAA CAA CAA CAA CAA CAA ACA
70210 AAC * 7 19/21 AAC AAA AAC AAC AAC AAC AAG
74656 GGA * 7 20/21 GGA GGA GGA GGA GGA GGA GGG
76582 TAA * 7 20/21 TAA TAA TAA TAA TAA TAA TAT
77833 TAA * 10 27/30 TAA TAA TAA TAA TAA TAA CAA TAA CAA TGA
90439 AAT * 8 23/24 AAT AAT AGT AAT AAT AAT AAT AAT
93432 TGC * 10 28/30 TGC TGC TGC TGC TGC TGC TGC TGC TCC TTC
94721 GCA * 7 19/21 GCA GCA GCA TCA GCA GCA CCA
94746 CAG * 8 22/24 CAG CAG CAG CAG CAA CAG CAG CAA
94773 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CAA
95325 ATG * 12 34/36 ATG ATC ATG ATG ATG ATG ATG ATT ATG ATG ATG ATG
98013 CAA * 8 22/24 CAA CAA CAA CAA CAA CAG CAA CAG
98258 CAA * 11 31/33 CAA CAG CAA CAA CAA CAA CAA CAA CAA CAA CAT
102592 CAG * 7 20/21 CAG CAG CAG CAG AAG CAG CAG
106102 GCA * 7 19/21 GCA CGA GCA GCA GCA GCA GCA
106133 CAA * 11 31/33 CAA CAA CAA CAA CAA CAG CAG CAA CAA CAA CAA
108441 TTA * 12 34/36 TTA TTA CTA TTA TTA TTA TTA TTA TTA TTA TTA TGA
115046 ACA * 7 19/21 ACA ACA ACA ATA GCA ACA ACA
149391 AAT * 7 20/21 AAT AAT AAT AAT AAT AAT AAC
152701 TTG * 8 22/24 TTG TTG TTA TTG TTG TAG TTG TTG
159569 CTA * 8 22/24 CTA CTA CTA CTA CTA CTA CCA CCA
161954 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAG CCA
163772 ATC * 12 33/36 ATC ATT ATC ATC ATC ATC ATC ATC ATC ATC ATT AGC
173035 TCT * 7 19/21 TCT TCT CCT TGT TCT TCT TCT
175770 AAC * 7 20/21 AAC AAC AGC AAC AAC AAC AAC
178929 CAC * 11 30/33 CAC CAC CAC CAC CAC CAC CAC CAC CAC ACC CAG
184724 ACA * 7 20/21 ACA ACA ACA ACA ACA ACA ACC
192009 AAC * 8 22/24 AAC AAC AAT AAC AAG AAC AAC AAC
199550 TGC * 7 19/21 TGC TGC TGC TGC TGT TTC TGC
204193 CGA * 11 31/33 CGA CAA CGA CGA CAA CGA CGA CGA CGA CGA CGA
214713 GAG * 7 19/21 GAG GAG GGC GAG GAG GAG GAG
219792 TAT * 12 33/36 TAT TAT GAT TAT TAT TAT TAT TAT TAA TAT TAT GAT
253225 ACA * 7 19/21 ACA ACA ACA ACT ACG ACA ACA
259978 CAT * 14 39/42 CAT CAT CAT CAT CAT CAT CAT CAT CAT AAT CAT CAT AAC CAT
266465 AGA * 7 19/21 AGA AGA AGA AGA AGA AGA CAA
273503 TGC * 7 19/21 TGC TGC TGG TGC CGC TGC TGC
281184 GGT * 8 22/24 GGT GCT GAT GGT GGT GGT GGT GGT
281229 CAC * 7 19/21 CAC CAC CAC CAT AAC CAC CAC
291304 TTG * 8 23/24 TTG TTG TTG TTG TTG TTG TTG TTT
296022 TTG * 12 34/36 TTG TTG TTG TTG TTG TTG TTG TTG TTA TTG TTA TTG
296403 TAA * 9 26/27 TAA TAA TAA TAA TAA TAA TAA TAA TGA
299855 TGG * 8 22/24 TGG TGA TGG TGG TGG TGG TGG TGA
301236 CTG * 7 19/21 CTG CTG CTG CTG CTG CTG GTA
307268 GTT * 7 19/21 GTT GTT GTT GTT GTG GTT GAT
-----------------------------------------------------------------------------------------
Total sequence length......................... 308093
Total number of repeats detected.............. 59
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 3 2 1 0 0 0 0 0 0 0 0 0 0
AAC 4 3 1 0 0 0 0 0 0 0 0 0 0
ATG 1 0 1 0 0 0 0 0 0 0 0 0 0
ATC 1 0 1 0 0 0 0 0 0 0 0 0 0
AGA 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 3 3 0 0 0 0 0 0 0 0 0 0 0
TAA 3 2 1 0 0 0 0 0 0 0 0 0 0
TAT 1 0 1 0 0 0 0 0 0 0 0 0 0
TTA 1 0 1 0 0 0 0 0 0 0 0 0 0
TTG 4 3 1 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 3 2 1 0 0 0 0 0 0 0 0 0 0
TCT 2 2 0 0 0 0 0 0 0 0 0 0 0
TCC 3 1 1 1 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 4 2 2 0 0 0 0 0 0 0 0 0 0
CAA 5 3 2 0 0 0 0 0 0 0 0 0 0
CAT 1 0 0 1 0 0 0 0 0 0 0 0 0
CAG 5 5 0 0 0 0 0 0 0 0 0 0 0
CAC 2 1 1 0 0 0 0 0 0 0 0 0 0
CTA 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 3 3 0 0 0 0 0 0 0 0 0 0 0
CGA 1 0 1 0 0 0 0 0 0 0 0 0 0
CCT 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
3 AAT + 0 ATA + 3 TAA + 0 ATT + 1 TTA + 1 TAT = 8
0 AAG + 1 AGA + 0 GAA + 0 CTT + 0 TTC + 2 TCT = 3
4 AAC + 3 ACA + 5 CAA + 1 GTT + 4 TTG + 1 TGT = 18
1 ATG + 0 TGA + 0 GAT + 1 CAT + 1 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 1 CTA + 0 TAC = 1
0 AGG + 1 GGA + 1 GAG + 1 CCT + 0 CTC + 3 TCC = 6
0 AGC + 4 GCA + 5 CAG + 0 GCT + 3 CTG + 3 TGC = 15
0 ACG + 1 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 2 CAC + 1 GGT + 0 GTG + 1 TGG = 4
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7292850|gb|AE003492.1|AE003492 Drosophila melanogaster genomic scaffold 142000013386053 section 9 of 30, complete sequence
Position Repeat Coverage Repeat
6424 CTC * 7 19/21 CTC CTC CTC CTC CTC CTT CTT
7858 ACA * 7 20/21 ACA ACA ACA ACA GCA ACA ACA
10652 GCT * 7 19/21 GCT GCT GCT GCT GCC GCT GCA
13510 CTG * 8 22/24 CTG TTG CTG CTG CTG CTG CTG TTG
13538 TGC * 15 41/45 TGC TGC TGC TGC TGC TGC TGC TGA TGT TGC TGC TGC TGT TGA TGC
14355 TTA * 29 79/87 TTA TAA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TGA TTC TAA TCA TTT AGA
27393 TTG * 7 19/21 TTG TGG TTG TTG TTG TTC TTG
35784 GAG * 7 20/21 GAG GAT GAG GAG GAG GAG GAG
36197 TGG * 7 19/21 TGG TGG TGG CGG CGG TGG TGG
43962 ACA * 10 28/30 ACA ACA ACA ATA ACA ACA ACA ACA ACA AAA
45359 TTG * 7 20/21 TTG TTG TTG TCG TTG TTG TTG
46034 ATC * 12 33/36 ATC ATC ATC ATC ATC ATC ATC ACC ATT ATC ATC GTC
48932 CAG * 8 23/24 CAG CAG CAG CAG CAG CAG CAG CTG
49799 GAG * 8 22/24 GAG GAG GAG GAG GAG GAG GAT GAC
64053 TGC * 7 19/21 TGC GGT TGC TGC TGC TGC TGC
68217 CAG * 7 19/21 CAG TCG CAG CAG CAG CAG CAG
69038 CGA * 7 19/21 CGA CGA TGA CGA CGA TGA CGA
72912 TGT * 7 19/21 TGT TGT TGC TGT TGT TGT TCT
84058 ACC * 7 19/21 ACC ATC ACC ATC ACC ACC ACC
84582 TCG * 7 19/21 TCG TCG TTG CCG TCG TCG TCG
85935 CAA * 10 28/30 CAA CAA CAT CAA CAA CAA CAA CAA CAA CAG
109980 AAT * 8 22/24 AAT ATT AAT AAT AAT ACT AAT AAT
113055 CCG * 7 19/21 CCG TTG CCG CCG CCG CCG CCG
124550 TGT * 7 20/21 TGT TGT TGT TGT TGT TGT TGA
124574 GTA * 12 33/36 GTA GTA GTA GTA ATA GTA GTA GTA GTA GTA GTA GGT
125419 GTA * 14 38/42 GTA GTA GTA GTA GTA GTA GTA GTA GTA GTA GAA GTA GAA GCT
126327 TGT * 7 19/21 TGT AGT TGT TGT TGT TGT TGG
126514 ATT * 8 23/24 ATT ATC ATT ATT ATT ATT ATT ATT
127330 GCC * 7 19/21 GCC ACC GCC GCG GCC GCC GCC
130742 TTG * 7 20/21 TTG TTG TTG TTG TTG CTG TTG
155229 ATT * 7 19/21 ATT ATT ATT ATT ATT AGT ATA
170959 GCT * 7 19/21 GCT GCT GTT GCT GCT GCT GTT
181888 TGG * 7 19/21 TGG GGG TGG TGG TGG TGG TGA
200847 GGT * 14 39/42 GGT GGT GGT GGT GGT GGT GGT GAA GGT GGT GGT GGT GGT GGG
225115 AGC * 8 23/24 AGC AGC AGC AGC AGC AGC ATC AGC
226730 CAG * 8 23/24 CAG CAG CAG CAG CAG CAG CAG CAA
257253 GCT * 8 23/24 GCT GAT GCT GCT GCT GCT GCT GCT
266703 CAG * 26 71/78 CAG CAT CAG CAG CAG CAT CAG CAG CAG CAT CAG CAG CAG CAG CAG CAG CAG CAG CAG CAA CAG CAA CAG CAG CAG CGC
266887 AGC * 7 19/21 AGC AGC AGC AGC AAC ATC AGC
267042 AGC * 12 33/36 AGC AGG AGG AGC AGC AGC AGC AGC AGC AGC TGC AGC
269399 ATG * 7 19/21 ATG GTG GTG ATG ATG ATG ATG
279305 GAT * 7 19/21 GAT GAC GAT GTT GAT GAT GAT
295933 AAC * 8 22/24 AAC AAC AAC AAC AAC AAC AAC ATT
297905 ATC * 20 54/60 ATC ATC ATC ATC ATC ATC ATC AGC ATC ATC ATC ATC ATC ATC ATC ACC ATT ATC GTC GGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 298939
Total number of repeats detected.............. 44
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 2 2 0 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 2 0 1 0 0 1 0 0 0 0 0 0 0
AGC 3 2 1 0 0 0 0 0 0 0 0 0 0
ACA 2 1 1 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 0 0 0 0 0 0 0 1 0 0 0 0
TTG 3 3 0 0 0 0 0 0 0 0 0 0 0
TGT 3 3 0 0 0 0 0 0 0 0 0 0 0
TGG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 2 1 0 1 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 2 2 0 0 0 0 0 0 0 0 0 0 0
GTA 2 0 1 1 0 0 0 0 0 0 0 0 0
GGT 1 0 0 1 0 0 0 0 0 0 0 0 0
GCT 3 3 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 0 1 0 0 0 0 0 0 0 0 0 0
CAG 4 3 0 0 0 0 0 1 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CGA 1 1 0 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 2 ATT + 1 TTA + 0 TAT = 4
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 2 ACA + 1 CAA + 0 GTT + 3 TTG + 3 TGT = 10
1 ATG + 0 TGA + 1 GAT + 0 CAT + 2 ATC + 0 TCA = 4
0 AGT + 2 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 2
0 AGG + 0 GGA + 2 GAG + 0 CCT + 1 CTC + 0 TCC = 3
3 AGC + 0 GCA + 4 CAG + 3 GCT + 1 CTG + 2 TGC = 13
0 ACG + 1 CGA + 0 GAC + 0 CGT + 0 GTC + 1 TCG = 2
1 ACC + 0 CCA + 0 CAC + 1 GGT + 0 GTG + 2 TGG = 4
0 GGC + 0 GCG + 0 CGG + 1 GCC + 1 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7292821|gb|AE003491.1|AE003491 Drosophila melanogaster genomic scaffold 142000013386053 section 8 of 30, complete sequence
Position Repeat Coverage Repeat
61045 TGC * 10 27/30 TGC TGT TGC TGC TGC TGC TGC TGC TGT TTC
61077 CTG * 8 22/24 CTG TTG CTG CTG CTG CTG CTG CCG
61102 CGT * 7 19/21 CGT CGT CGT CGT CTT CGT CAT
93914 CAT * 9 25/27 CAT AAT CAA CAT CAT CAT CAT CAT CAT
107546 GTC * 8 22/24 GTC GTC GTC TTC GTC GTC GTC GAC
107733 AGC * 8 22/24 AGC AGC AGC GCC AGC AGC AGC AGC
110463 AAT * 10 28/30 AAT GAT AAT AAT AAT AAT AAT AAT AAT ATT
144086 TTG * 11 31/33 TTG TTG TTG TTG TTG TTG TTG TTG TTG TGG TGG
148089 CAG * 8 22/24 CAG CAG CAG CAA CAG CAC CAG CAG
153210 GCG * 7 19/21 GCG GTG GCG GCA GCG GCG GCG
154835 GCT * 7 19/21 GCT GTG GCT GCT GCT GCT GCT
155086 GCT * 7 19/21 GCT GCT GCT GCT GTT GCT GCA
177222 AAT * 7 19/21 AAT AAT AAT AAT AAT AGT AAA
255762 TTA * 7 19/21 TTA TTA TAT TTA TTA TTA TTA
255961 CTG * 17 46/51 CTG TTG CTG CTG TTG CTG CTG CTG CTG CTG CTG CTG GTG CTG CTG CTG CGC
261935 TAA * 18 51/54 TAA TAA TAA TAA TCG TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA AAA TAA
270034 TGT * 7 19/21 TGT TGT TGT TAC TGT TGT TGT
274393 TTA * 10 27/30 TTA TTA TTA TTA TTA TTA TTT TTT TTA ATA
277574 TGT * 7 19/21 TGT TTT TGT TGT TGT TGT TCT
281633 TGT * 7 19/21 TGT TGC TGC TGT TGT TGT TGT
292511 CAA * 7 20/21 CAA CAA CAA CAA CAA CAG CAA
292548 CAA * 7 19/21 CAA CAA CAA CTG CAA CAA CAA
322417 ATT * 8 22/24 ATT CTT CTT ATT ATT ATT ATT ATT
322448 TTG * 8 22/24 TTG TTG TTG TTG TTG TTA TTG TTC
-----------------------------------------------------------------------------------------
Total sequence length......................... 323489
Total number of repeats detected.............. 24
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 2 1 1 0 0 0 0 0 0 0 0 0 0
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 0 0 0 1 0 0 0 0 0 0 0 0
TTA 2 1 1 0 0 0 0 0 0 0 0 0 0
TTG 2 1 1 0 0 0 0 0 0 0 0 0 0
TGT 3 3 0 0 0 0 0 0 0 0 0 0 0
TGC 1 0 1 0 0 0 0 0 0 0 0 0 0
GTC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 2 1 0 0 1 0 0 0 0 0 0 0 0
CGT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
2 AAT + 0 ATA + 1 TAA + 1 ATT + 2 TTA + 0 TAT = 6
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 2 CAA + 0 GTT + 2 TTG + 3 TGT = 7
0 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 0 GCA + 1 CAG + 2 GCT + 2 CTG + 1 TGC = 7
0 ACG + 0 CGA + 0 GAC + 1 CGT + 1 GTC + 0 TCG = 2
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 1 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7292788|gb|AE003490.1|AE003490 Drosophila melanogaster genomic scaffold 142000013386053 section 7 of 30, complete sequence
Position Repeat Coverage Repeat
9518 GCA * 8 23/24 GCA GCA GCA GCA GCA GCA GCA GTA
24502 GCA * 9 25/27 GCA GCA GCA ACA GCA GCA GCA GCA ACA
24542 CAG * 7 19/21 CAG CAA CAA CAG CAG CAG CAG
24566 CAG * 8 22/24 CAG CAG CAA CAG CAG CAG CAG CAA
24929 GGC * 7 19/21 GGC GGC AGC GGC GGC GGC GGT
25166 ACA * 8 22/24 ACA ACA ACT ACA ACA ACA ACA ATA
27859 AGC * 8 22/24 AGC AGC AGC AGC GCC AGC AGC AGC
30397 GTT * 7 19/21 GTT GTT GTT TTT GTT GTT GTG
39590 GAA * 7 19/21 GAA GAA GAC GAA GAA GAA GAG
39653 AGG * 7 19/21 AGG AGG AGA AGG AGG AGG AGC
40473 ACA * 9 25/27 ACA ACA GCA ACA ACA ACA ACA ATA ACA
40892 TTA * 12 33/36 TTA TTA TTA TTA TTA TTA TTA TTT TTA TTA ATA ATA
41305 TTG * 7 19/21 TTG TTG TTG TGG CTG TTG TTG
47992 ATA * 8 22/24 ATA CTA ATA ATA ATA ATA AAA ATA
53827 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CAC
53851 CAG * 7 19/21 CAG CAG CAG CAG CAG CAG CCA
54584 AGC * 11 30/33 AGC AAC AGT AGC AGC AGC AGC AGC AGC AGC GGC
54634 CAA * 7 19/21 CAA CAG CAT CAA CAA CAA CAA
56348 ACA * 7 19/21 ACA ACA ACA AAA ACA ACA ACC
62665 TGT * 7 19/21 TGT TGT TGT TGC TGC TGT TGT
62821 TGC * 11 30/33 TGC TGC TGC TGC TGT TGC TGC TGT TGC TGC TGT
62971 TGT * 12 33/36 TGT TGT TGT TGT TGT TGC TGT TGT TGT TGT TGC TGA
63262 CCG * 7 19/21 CCG CCA CCG CCG CCG CCA CCG
64357 TGC * 9 26/27 TGC TGC TGC TGC TGC TGC TGC TGC TGG
64393 TGC * 11 30/33 TGC TGC TGG TGT TGC TGC TGC TGC TGC TGC TGG
64714 TGC * 7 20/21 TGC TGC TGC TGC TGC TGC TGG
65546 TGC * 12 34/36 TGC TGC TGC TGC TGT TGC TGC TGC TGC TGC TGC TGG
66446 GCT * 12 33/36 GCT GTT GCT GCT GCT GCT GCT GTT GCT GCT GTT GCT
67011 CTG * 8 22/24 CTG TTG CTG CTG CTG TTG CTG CTG
67036 TGC * 8 23/24 TGC TGC TGC TGT TGC TGC TGC TGC
68082 CTG * 9 25/27 CTG CTG CTG CTG CTG CTG CTG CTT CAG
68176 TGC * 10 28/30 TGC TGC TGC TGC TGC TGC TGT TGC TGC TGG
68803 TGC * 10 27/30 TGC TGT TGC TGT TGC TGC TGC TGC TGC TGT
68836 TGC * 11 30/33 TGC TGC TGC TGC TGT TGC TGC TGT TGC TGT TGC
78207 GTT * 12 33/36 GTT GTT GTT GTT GTT ATT GTT GTT GTT ATT GTT GCT
80074 TTG * 8 22/24 TTG TTG TTG CTG TTG TTC TTG TTG
82128 GCA * 8 24/24 GCA GCA GCA GCA GCA GCA GCA GCA
82440 CAT * 13 36/39 CAT CAT CAT CAT CAT CAG CAG CAT CAT CAT CAT CAT CAG
84364 CAG * 7 19/21 CAG CAG CAG CAA CAA CAG CAG
84394 CAG * 13 36/39 CAG CAG CAG CAG CAG CGG CAG CAG CGG CAG CAG CAG CAA
87088 TGC * 8 23/24 TGC TGC TGC TGC TGC TGC TGT TGC
87762 TGA * 16 44/48 TGA TGC TGA TGA TGC TGA TGA TGA TGA TGA TGA TGT TGA TGA TGA TGT
89746 CTG * 20 54/60 CTG CTG CTG CTG CTG CTG CTG CTG CTG TTG GTG CTG CTG CTG CTT CTG TTG CTG CTG TGG
89956 CTG * 12 33/36 CTG ATG TTG CTG CTG CTG CTG CTG CTG CTG CTG GTG
90098 TGC * 9 25/27 TGC TGC TGC TGC TGC TGT TGC AGC TGC
90320 TGC * 11 30/33 TGC TGC TGC TGA TGC TGC TGT TGC TGC TGC TGG
90469 TCC * 7 19/21 TCC TCC TCC ACC TCC ACC TCC
90490 GCT * 7 19/21 GCT GCT ACT GCT GCT GCT GTT
90607 CTG * 8 22/24 CTG CTG CTG TTG TTG CTG CTG CTG
90632 TGC * 15 42/45 TGC TGC TGC TGC TGT TGT TGC TGC TGC TGC TGC TGC TGC TGC TGA
90848 GCT * 10 27/30 GCT GCC GCT GCT GCT GCT GCC GCT GCT GCA
90968 TGC * 10 27/30 TGC TGC TGC TGC TGT TGC TGC TGT TGC TGT
91004 TGC * 12 33/36 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGT TGG TGG
91078 CTG * 10 27/30 CTG TTG CTG CTG CTG CTG CTG CTG TTG GTG
91111 CTG * 8 22/24 CTG GTG CTG CTG CTG CTG CTG CAG
94810 TCT * 7 19/21 TCT TCT TCT TCT TCT TCT GGT
105354 TCA * 14 38/42 TCA TCA TCA TTA TCA TCA TCA TCA TCT TCA TCA TCA TCG TTA
106926 TGC * 11 30/33 TGC TGC TGC TGC TGC TGC TGC TGC TGT TGC GTC
107028 TGC * 20 54/60 TGC TGC TGC TGC TGC TGC TGC TGC TGT TGT TGC TGC TGC TGC TGC TGC TGT TGC TGT AGT
107242 TGT * 7 19/21 TGT TGT TGT TGT TGC TGT TGC
107263 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC TGT TGT
107414 TTG * 7 19/21 TTG TTG TTG TTG CTG TTG TTA
110763 AAT * 7 20/21 AAT TAT AAT AAT AAT AAT AAT
120911 TAT * 7 19/21 TAT ATT TAT TAT TAT TAT TAT
127889 CAA * 9 25/27 CAA CAA CAA CAA CGA CAG CAA CAA CAA
159094 TTG * 7 19/21 TTG CTG CTG TTG TTG TTG TTG
159209 TGT * 7 19/21 TGT TGT TGT TGC TGT TGC TGT
160577 GCT * 12 33/36 GCT GCT GCT GCT GCT GCT GCT GCT GCT GCA ACT GCA
164986 AGT * 8 22/24 AGT AGT AGT TGT AGT AGT TGT AGT
166264 GCA * 8 22/24 GCA GCA GCA GCA GCA GCA GCA GAG
166298 CAG * 10 27/30 CAG CAA CAG CAA CAG CAG CAG CAG CAG CAA
167492 TCC * 12 34/36 TCC TCC TGC TCA TCC TCC TCC TCC TCC TCC TCC TCC
169647 CCT * 10 27/30 CCT CCT CCT CCT CCT CCG CCT CCT CCG CCG
175667 TGA * 8 24/24 TGA TGA TGA TGA TGA TGA TGA TGA
194936 ATG * 7 19/21 ATG ACA ATG ATG ATG ATG ATG
202655 ATG * 11 30/33 ATG ATA ATG ATG ATG ATG ATG ATG ATG ATG CAG
206337 TGC * 10 27/30 TGC TGC TGC TGG TGC TGC TGG TGC TGC TGA
207063 TGC * 11 30/33 TGC TGC TGC TGT TGT TGC TGC TGC TGC TGC TGG
207130 TGC * 7 19/21 TGC CGC TGC TGC TGC TGC CGC
207443 TGC * 7 19/21 TGC TGC TGC TGC TGC TGC AGT
210108 CAG * 18 50/54 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAA CAT CAG CAA CTG
243318 CAG * 9 25/27 CAG CAA CAG CAG CAA CAG CAG CAG CAG
248928 ATA * 8 22/24 ATA ATA CTA ATA ATA ATA TTA ATA
248961 ATA * 7 19/21 ATA ATA ATA ATA ATA ATC ATC
268903 ACA * 7 19/21 ACA ACA ACA GCA ACA ACA ATA
268937 AAC * 7 19/21 AAC AAC AAC AAC AAC GAC AGC
280279 GGT * 7 19/21 GGT GGT GGT GGT GTT GGT GTT
281331 GAA * 8 22/24 GAA GAA GAA GAA GAG GAA GAA GCA
293146 TGC * 8 24/24 TGC TGC TGC TGC TGC TGC TGC TGC
293420 AAC * 21 57/63 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAA AAA AGA AAA CAC AAC
294608 ATA * 11 32/33 ATA ATA AAA ATA ATA ATA ATA ATA ATA ATA ATA
-----------------------------------------------------------------------------------------
Total sequence length......................... 302752
Total number of repeats detected.............. 91
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 2 1 0 0 0 1 0 0 0 0 0 0 0
ATA 4 3 1 0 0 0 0 0 0 0 0 0 0
ATG 2 1 1 0 0 0 0 0 0 0 0 0 0
AGT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 1 1 0 0 0 0 0 0 0 0 0 0
ACA 4 4 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 0 1 0 0 0 0 0 0 0 0 0 0
TTG 4 4 0 0 0 0 0 0 0 0 0 0 0
TGA 2 1 0 0 1 0 0 0 0 0 0 0 0
TGT 4 3 1 0 0 0 0 0 0 0 0 0 0
TGC 23 9 12 1 0 1 0 0 0 0 0 0 0
TCA 1 0 0 1 0 0 0 0 0 0 0 0 0
TCT 1 1 0 0 0 0 0 0 0 0 0 0 0
TCC 2 1 1 0 0 0 0 0 0 0 0 0 0
GAA 2 2 0 0 0 0 0 0 0 0 0 0 0
GTT 2 1 1 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 4 4 0 0 0 0 0 0 0 0 0 0 0
GCT 4 1 3 0 0 0 0 0 0 0 0 0 0
CAA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAT 1 0 0 1 0 0 0 0 0 0 0 0 0
CAG 9 6 1 1 1 0 0 0 0 0 0 0 0
CTG 7 4 2 0 0 1 0 0 0 0 0 0 0
CCT 1 0 1 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 4 ATA + 0 TAA + 0 ATT + 1 TTA + 1 TAT = 7
0 AAG + 0 AGA + 2 GAA + 0 CTT + 0 TTC + 1 TCT = 3
2 AAC + 4 ACA + 2 CAA + 2 GTT + 4 TTG + 4 TGT = 18
2 ATG + 2 TGA + 0 GAT + 1 CAT + 0 ATC + 1 TCA = 6
1 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 1
1 AGG + 0 GGA + 0 GAG + 1 CCT + 0 CTC + 2 TCC = 4
2 AGC + 4 GCA + 9 CAG + 4 GCT + 7 CTG + 23 TGC = 49
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 1 GGT + 0 GTG + 0 TGG = 1
1 GGC + 0 GCG + 0 CGG + 0 GCC + 1 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7292759|gb|AE003489.1|AE003489 Drosophila melanogaster genomic scaffold 142000013386053 section 6 of 30, complete sequence
Position Repeat Coverage Repeat
5968 TAG * 9 25/27 TAG TAG TAG TAG TAG TAG TAG TAG CAA
31189 GCA * 10 28/30 GCA ACA GCA GCA GCA GCA GCA GCA GCA ACA
32144 TGC * 7 19/21 TGC TGC TGC TGT TGC TGC TAC
35175 GCA * 7 19/21 GCA GCA GTG GCA GCA GCA GCA
35745 TAC * 7 20/21 TAC TAC TGC TAC TAC TAC TAC
42679 CAA * 8 22/24 CAA TAA TAA CAA CAA CAA CAA CAA
49892 ATC * 8 22/24 ATC CTC ATC ATG ATC ATC ATC ATC
80060 CAA * 8 22/24 CAA CCG CAA CAA CAA CAA CAA CAA
104187 AGC * 8 22/24 AGC AGC AGA AGC AGC AGC AGC AAC
122888 AGG * 7 19/21 AGG AGC AGG CGG AGG AGG AGG
124089 GCA * 7 19/21 GCA GCA GCA GCA GCA GCA ACC
125575 CAG * 11 31/33 CAG CAG CAG CAG CAG CAG CAG CAA CAG CAA CAG
125789 CAG * 20 54/60 CAG CAG CAG CAG CAG CAG CAG CAG CAG CCG CCG CAC CAG CAG CAG CAA CAG CAA CAG AAG
125981 AGC * 8 22/24 AGC AGC AGC GGC AGC AGC AGC AAC
126111 TGC * 15 41/45 TGC TTC TGC TGC TGC TGC TGC TGC TAC TGA TGC TGC TGC TGA TGC
126310 GAC * 8 22/24 GAC GAC GAC GAC GAC GAC GAC GGG
141080 AAT * 7 21/21 AAT AAT AAT AAT AAT AAT AAT
151332 TTG * 7 19/21 TTG TAA TTG TTG TTG TTG TTG
153447 CAA * 7 19/21 CAA CAG CAG CAA CAA CAA CAA
155688 AGA * 7 19/21 AGA AGA AGA ACA AGA AGA AGG
177042 TTG * 7 19/21 TTG TTG TTG TTA TTG TTG CTG
189461 GAT * 7 19/21 GAT GAT GAC GAT AAT GAT GAT
193975 CAA * 10 28/30 CAA CAA TAA CAA CAA CAA CAA CAA CAA CAC
199332 ATG * 9 25/27 ATG ATG ATG ATG ATG ATG GTG ATG GTG
202334 TGC * 7 19/21 TGC GGC TGC TGT TGC TGC TGC
202532 TGC * 8 22/24 TGC TGC TGC TGT TGC TGC TGC TGT
202643 TGC * 10 27/30 TGC TGA TGC TGC TGC TGC TGC TGT TGC TGG
202691 GCT * 7 19/21 GCT GTT GCT GCT GCT GCT GCC
202813 TGC * 10 28/30 TGC TGC TGC TGT TGC TGC TGC TGC TGC TGG
243097 CCT * 10 28/30 CCT CCG GCT CCT CCT CCT CCT CCT CCT CCT
246307 GTT * 8 22/24 GTT GTT GCT GTA GTT GTT GTT GTT
253472 CAA * 8 22/24 CAA CAA CAA GAA CAG CAA CAA CAA
261735 CTT * 8 22/24 CTT CAG CTT CTT CTT CTT CTT CTT
273862 TCC * 7 19/21 TCC TCC TCC TCC TCC TCC TTT
276194 GCA * 7 19/21 GCA TCA GCA GCA GCA GCA ACA
276357 CAG * 7 19/21 CAG CAT CAA CAG CAG CAG CAG
280462 CAA * 7 19/21 CAA CAA CAA CAA CAA CAG CAG
284645 GAG * 7 19/21 GAG GAG GAG GAT GAG GAG CAG
284718 AGC * 8 22/24 AGC AGC AGC AGC TGC AGC AGG AGC
285037 AGC * 8 23/24 AGC AGC AGC AGC AGC AGC AGC AAC
298649 GGT * 8 22/24 GGT GGT GGC GGA GGT GGT GGT GGT
-----------------------------------------------------------------------------------------
Total sequence length......................... 302915
Total number of repeats detected.............. 41
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGA 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 4 4 0 0 0 0 0 0 0 0 0 0 0
TAG 1 1 0 0 0 0 0 0 0 0 0 0 0
TAC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 6 3 2 1 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 4 3 1 0 0 0 0 0 0 0 0 0 0
GCT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 6 5 1 0 0 0 0 0 0 0 0 0 0
CAG 3 1 1 0 0 1 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 1 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 2
0 AAC + 0 ACA + 6 CAA + 1 GTT + 2 TTG + 0 TGT = 9
1 ATG + 0 TGA + 1 GAT + 0 CAT + 1 ATC + 0 TCA = 3
0 AGT + 0 GTA + 1 TAG + 0 ACT + 0 CTA + 1 TAC = 2
1 AGG + 0 GGA + 1 GAG + 1 CCT + 0 CTC + 1 TCC = 4
4 AGC + 4 GCA + 3 CAG + 1 GCT + 0 CTG + 6 TGC = 18
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 1 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7292734|gb|AE003488.1|AE003488 Drosophila melanogaster genomic scaffold 142000013386053 section 5 of 30, complete sequence
Position Repeat Coverage Repeat
358 TCG * 8 23/24 TCG TCG TCG TCA TCG TCG TCG TCG
1882 ATC * 7 19/21 ATC ATC AAC ATC ATC ACC ATC
19420 CTG * 18 50/54 CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG TTG TTG CTG TTG CTA
20401 ACC * 8 22/24 ACC ACC AAC ACC ACC AAC ACC ACC
34982 TGG * 7 19/21 TGG TGG TGA TGG TGA TGG TGG
55538 ATA * 7 19/21 ATA ACA ATA ATA ATA ATA ACA
64627 TGC * 16 44/48 TGC TGC TGC CGC TGC CGC TGC TGC TGC TGC TGC TGC TGC TGC TGT TGA
64770 TGC * 9 25/27 TGC TGC TGC TGC TGC TGC TGC TGC GGA
78468 GTC * 7 19/21 GTC GTC GTC GTC GTC GCT GTC
81766 TAA * 10 27/30 TAA TAA TAG TAA TAA TAA TAA TAA TAA AAT
83537 TTG * 7 19/21 TTG TTA TTG TTG TTG TTG GTG
89276 CAT * 9 26/27 CAT CAT CAT CAT CAT CAT CAT CAT CTT
105500 GAT * 9 25/27 GAT GAT GAT GAT GAT GAT GAT GAT GGG
105589 AAC * 7 19/21 AAC ACC AGC AAC AAC AAC AAC
127646 CAG * 7 19/21 CAG CAG CAG CAG CAT CAG GAG
143612 CTT * 8 22/24 CTT CAA CTT CTT CTT CTT CTT CTT
143788 TTG * 17 46/51 TTG TTG CTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG CTC TTG TGT
151841 CAC * 7 20/21 CAC CAA CAC CAC CAC CAC CAC
155971 ATA * 8 22/24 ATA ATA ATA ATA ATA ATA ATA TTT
176040 CAT * 9 26/27 CAT CAT CAT CAT CAT CAT CAT CGT CAT
178348 CAG * 7 19/21 CAG CAG CAG CAG CGG CGG CAG
178613 CAG * 11 30/33 CAG CAA CAG CAG CAA CAG CAG CAG CAG CAA CAG
204399 GTG * 7 19/21 GTG GTG ATG GTG GTG GTG GGG
223931 CAT * 7 20/21 CAT CAT CAT TAT CAT CAT CAT
223974 ATC * 7 20/21 ATC ATC ATC ATC ATC ATC ATT
229097 ATA * 9 26/27 ATA AGA ATA ATA ATA ATA ATA ATA ATA
242810 TGG * 7 19/21 TGG TGA TGG TGA TGG TGG TGG
248044 CTG * 8 22/24 CTG CTG CTG CTG CTG CTG GTG GTG
250585 GCA * 7 19/21 GCA GCA GCA GCA GCA CCA TCA
255787 TAA * 7 19/21 TAA AAA TAA TAA TAA CAA TAA
263031 AGC * 7 19/21 AGC AGC AGG AGC AGC AGG AGC
271337 TGA * 8 22/24 TGA TGA TGA TGA CGA TGA TGA TGG
274977 GGC * 7 19/21 GGC GGC GGC GGC GGC AGC AGC
283579 GAT * 7 19/21 GAT GAT GAT GAC GAT GAT GCT
-----------------------------------------------------------------------------------------
Total sequence length......................... 302797
Total number of repeats detected.............. 34
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 3 3 0 0 0 0 0 0 0 0 0 0 0
ATC 2 2 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 2 1 1 0 0 0 0 0 0 0 0 0 0
TTG 2 1 0 0 1 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 2 1 0 0 1 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 2 2 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTC 1 1 0 0 0 0 0 0 0 0 0 0 0
GGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 3 3 0 0 0 0 0 0 0 0 0 0 0
CAG 3 2 1 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 2 1 0 0 1 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 3 ATA + 2 TAA + 0 ATT + 0 TTA + 0 TAT = 5
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 1
1 AAC + 0 ACA + 0 CAA + 0 GTT + 2 TTG + 0 TGT = 3
0 ATG + 1 TGA + 2 GAT + 3 CAT + 2 ATC + 0 TCA = 8
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 1 GCA + 3 CAG + 0 GCT + 2 CTG + 2 TGC = 9
0 ACG + 0 CGA + 0 GAC + 0 CGT + 1 GTC + 1 TCG = 2
1 ACC + 0 CCA + 1 CAC + 0 GGT + 1 GTG + 2 TGG = 5
1 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7292680|gb|AE003487.1|AE003487 Drosophila melanogaster genomic scaffold 142000013386053 section 4 of 30, complete sequence
Position Repeat Coverage Repeat
5584 CTC * 7 20/21 CTC CTG CTC CTC CTC CTC CTC
6770 GGT * 7 19/21 GGT GGT GGT GGA GTT GGT GGT
37050 GCT * 7 19/21 GCT GCT GCT GCG GCT GCT GTT
44000 TTA * 8 22/24 TTA TTA TTA TTG TTA TTA TTA TTG
45160 GAT * 7 20/21 GAT GAT GAT GAT GAT GAC GAT
51040 AGG * 7 19/21 AGG AGG AGG AAG AGG AGA AGG
51509 GCA * 7 19/21 GCA ACA GCA GCA GCA GCA ACA
51531 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAA CAA
55419 TGC * 12 34/36 TGC TGC TGC TGC TGC TGC TGC TGC TGT TGC GGC TGC
55812 TGC * 8 22/24 TGC TGA TGC TGC TGC TGT TGC TGC
55839 TGC * 8 22/24 TGC TGC TGC TGC TGC TGT TGT TGC
59777 TGC * 12 33/36 TGC TGC TGC TGC TGC TGT TGC TGT TGC TGT TGC TGC
61240 TGC * 7 19/21 TGC TGT TGC TGT TGC TGC TGC
61267 TGC * 7 19/21 TGC TGC TGC TGC AGT TGC TGC
61833 GCA * 9 25/27 GCA GCA GCA GCA GCA GCA GCG GCA GCG
62031 TGC * 11 31/33 TGC CGT TGC TGC TGC TGC TGC TGC TGC TGC TGC
62217 TGC * 7 20/21 TGC TGC TGC TGC TGA TGC TGC
66323 TGC * 8 22/24 TGC TGC TGC CGC TGC TGC TGC TGT
78852 ACA * 9 25/27 ACA ACA ACA ACA ACA ACA ACA GCC ACA
85717 TTG * 8 23/24 TTG TTG TTG TTG TTG TTG TTG TGG
93183 ATC * 8 23/24 ATC ATC ATC ATT ATC ATC ATC ATC
95105 TCC * 7 19/21 TCC AAC TCC TCC TCC TCC TCC
110891 ATG * 7 19/21 ATG ATG CTG ATA ATG ATG ATG
113545 CAG * 8 22/24 CAG CAG CAA CAG CAA CAG CAG CAG
116392 CAG * 8 23/24 CAG CAG CAG CAG CAG CAG CAG CCG
118533 GAG * 15 41/45 GAG GAG GAG GAG GAG GAG GAG GAG GAG CTG GAT GAG GAG GCG GAG
127670 CTG * 8 22/24 CTG TTG CTG CTG CTG CTG CAG CTG
127695 TGC * 8 22/24 TGC TGT TGC TGC TGC TGC TGC AGC
127722 TGC * 8 22/24 TGC TGT TGC TGC TGC TGC TGT TGC
127754 CTG * 7 19/21 CTG CTG CTG CTC CTG CTG TTG
128342 CTG * 7 20/21 CTG CTG CTG TTG CTG CTG CTG
128423 CTG * 7 19/21 CTG CTG CTG CTG TTC CTG CTG
128709 TGC * 9 25/27 TGC TGC TGC TGT TGC TGC TGC TGC TGG
129126 TGC * 11 30/33 TGC TGC TGC TGC AGT TGC TGC TGC TGC TGT TGC
148753 CCT * 12 33/36 CCT CCT TCT CCT TCT CCT CCT CCT CCT CCT CCT CCG
148793 CTC * 7 19/21 CTC CTC TTC CTC CTC GTC CTC
166737 CAC * 7 19/21 CAC CAC CAC CAC CAC CGC CGC
166945 CGC * 7 19/21 CGC CGC CGC AGC AGC CGC CGC
170120 GAT * 8 22/24 GAT GGT GAT GAT GAC GAT GAT GAT
172258 GGC * 7 19/21 GGC GGC GGA GGC GGT GGC GGC
179128 GCA * 7 19/21 GCA GCA GCA GCA GTT GCA GCA
179183 CAG * 7 19/21 CAG TAG CAG CAG TAG CAG CAG
179645 AGC * 7 19/21 AGC AGC TGC AGC AGC AGC CGC
180753 CAG * 7 20/21 CAG CAG CAG CAG CAG CAG CAA
183034 CAG * 8 22/24 CAG CTG CAG CAG CAC CAG CAG CAG
228731 TTA * 8 22/24 TTA ATA TTA TTG TTA TTA TTA TTA
240944 GTT * 7 20/21 GTT GTT GTA GTT GTT GTT GTT
240965 AGT * 7 19/21 AGT TGT AGT AGT AGT AGT GGT
244596 TTG * 10 27/30 TTG TTT TTG TTG TTG TTG TTG TAG TTG TTT
277037 ATA * 8 22/24 ATA ATA ATT ATA ATT ATA ATA ATA
277062 TAA * 11 32/33 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAG
286119 TTG * 7 19/21 TTG TTG TTG TTG TTG TTG CGG
287655 GCT * 7 19/21 GCT GCT GCT GTT GCT GTT GCT
298180 GAG * 7 19/21 GAG GAG GTG GAG GTG GAG GAG
298907 TGT * 8 22/24 TGT TGT TGT TGT TGT TGT TGC TTT
-----------------------------------------------------------------------------------------
Total sequence length......................... 301051
Total number of repeats detected.............. 55
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 0 1 0 0 0 0 0 0 0 0 0 0
TTA 2 2 0 0 0 0 0 0 0 0 0 0 0
TTG 3 2 1 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 13 9 4 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 2 2 0 0 0 0 0 0 0 0 0 0 0
GAG 2 1 0 1 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 3 3 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 6 6 0 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 4 4 0 0 0 0 0 0 0 0 0 0 0
CTC 2 2 0 0 0 0 0 0 0 0 0 0 0
CGC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 1 TAA + 0 ATT + 2 TTA + 0 TAT = 4
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 1 ACA + 0 CAA + 1 GTT + 3 TTG + 1 TGT = 6
1 ATG + 0 TGA + 2 GAT + 0 CAT + 1 ATC + 0 TCA = 4
1 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 1
1 AGG + 0 GGA + 2 GAG + 1 CCT + 2 CTC + 1 TCC = 7
1 AGC + 3 GCA + 6 CAG + 2 GCT + 4 CTG + 13 TGC = 29
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 1 CAC + 1 GGT + 0 GTG + 0 TGG = 2
1 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 1 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7292639|gb|AE003486.1|AE003486 Drosophila melanogaster genomic scaffold 142000013386053 section 3 of 30, complete sequence
Position Repeat Coverage Repeat
988 CGG * 7 19/21 CGG CGG CGG CGG TGG CAG CGG
1376 GCG * 8 22/24 GCG ACG GCG GCG GCA GCG GCG GCG
2350 TTG * 8 22/24 TTG TTG TTG TTG TTG TTG CTG CTG
2748 CAA * 8 22/24 CAA TAA CAA CAG CAA CAA CAA CAA
7056 AGC * 9 25/27 AGC AGC CGC AGC AGT AGC AGC AGC AGC
7340 CAG * 11 30/33 CAG CAG CAT CAG CAG CAG CAG CAG CAG CAT CAT
8623 TAA * 10 29/30 TAA TAA TAA TAA TAA TAA TAA TAA CAA TAA
13116 CAA * 7 19/21 CAA CAA CAA CGA CAA CAA CAT
14466 TTA * 7 19/21 TTA TTA TTA TTA TTT TTT TTA
17232 ACA * 15 41/45 ACA ACT ACA ACA ACA ACA AGA ACA ACA ACA ACA ACA GCA ACC ACA
17292 ACA * 7 20/21 ACA ACA ACA AAA ACA ACA ACA
20076 GAA * 8 22/24 GAA AAA GAA AAA GAA GAA GAA GAA
34664 AAC * 7 19/21 AAC AAC AAC AAC AAC AAC AGG
55800 GAG * 7 19/21 GAG GAG GAG GAG GGG GAG GCG
64286 TGT * 7 19/21 TGT TGT CAT TGT TGT TGT TGT
78124 AAG * 7 19/21 AAG AAG CAG AAG CAG AAG AAG
113971 CAA * 8 22/24 CAA CAA CAA CTA CAA CAA CAG CAA
116571 CAA * 11 30/33 CAA CAA CAA GAG CAA CAA CAA CAA CAA CAA CAG
119439 GAT * 12 33/36 GAT GAT GAC AAT GAT GAT GAT GAT GAT GAT GAT GTT
121786 TAA * 7 19/21 TAA TAC TAA TAA TAA TAA CAA
131530 CAA * 7 19/21 CAA GAA CAA CAA CAA CAA AAA
144173 AAC * 8 23/24 AAC AAC AAC AAC AAC AAC AAC ATC
150749 ATA * 7 19/21 ATA ATA ATA ATA ATA ATA TTT
154936 CAA * 7 19/21 CAA CAG CAA CAA CAA CAA CAC
157383 ATC * 9 25/27 ATC ATC GTC ATC ATC ATC ATC GTC ATC
160775 AAC * 7 19/21 AAC AAC AAC AAC AAC AAC AGA
161670 GGA * 7 19/21 GGA GGA CGA GGA AGA GGA GGA
161693 AGG * 8 22/24 AGG TGG AGG AGG AGG AGG AGG AGA
166016 GGT * 8 22/24 GGT GTT GGT GGT GCT GGT GGT GGT
187648 CAG * 7 19/21 CAG CAG CAA CAG CAG AAG CAG
201305 TTG * 7 19/21 TTG TTG TTG TTG TTG CTC TTG
212369 AAG * 8 22/24 AAG AAC AAG AAG AAC AAG AAG AAG
229787 CCA * 9 25/27 CCA AAA CCA CCA CCA CCA CCA CCA CCA
241527 GAT * 11 30/33 GAT GAT GAT GAT GAT GAT GAT GAT GAT GGT GGG
260790 TAT * 8 22/24 TAT TAT TAT TAT TAT TAT TAT GAC
264101 CAT * 7 19/21 CAT CAT CGT CAT TAT CAT CAT
273748 GCA * 12 33/36 GCA GCA GCA GCA GCA GCA GCA ACA GCA ACA GCA GCC
274196 GAG * 7 19/21 GAG GAG GAC GAG GAT GAG GAG
281913 CAA * 11 30/33 CAA CAA CAA CAA CAA CAG CAG CAA CAA CAG CAA
283219 ACG * 7 19/21 ACG ACG ACG ATC ACG ACG ACG
284197 TAT * 7 19/21 TAT TAT TAT TAT TAT TTT TTT
289234 TAT * 15 41/45 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TGT TGT TGC
290608 CCA * 7 19/21 CCA CCA CTA CCA GCA CCA CCA
295274 AAC * 7 19/21 AAC AAC AAC AAA AAC AGC AAC
298284 ACC * 8 22/24 ACC ACG ACC ACC ACC ACC ACC ACT
300645 GCA * 7 19/21 GCA GCA GCA GCA GCA ACA GTA
301525 TAT * 7 19/21 TAT TAC TAT TAC TAT TAT TAT
-----------------------------------------------------------------------------------------
Total sequence length......................... 303648
Total number of repeats detected.............. 47
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAG 2 2 0 0 0 0 0 0 0 0 0 0 0
AAC 4 4 0 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 2 1 0 1 0 0 0 0 0 0 0 0 0
ACG 1 1 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 2 1 1 0 0 0 0 0 0 0 0 0 0
TAT 4 3 0 1 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 2 0 2 0 0 0 0 0 0 0 0 0 0
GAG 2 2 0 0 0 0 0 0 0 0 0 0 0
GGA