Tri-Nucleotide Repeats in Genomic Sequences
Tri-Nucleotide Repeats in
Drosophila melanogaster Chromosome-X genomic scaffolds
Genomic sequence
gi|7289277|gb|AE002611.1|AE002611 Drosophila melanogaster genomic scaffold 142000013385548, complete sequence
Position Repeat Coverage Repeat
12371 GGT * 7 19/21 GGT GTT GGT GGT GTT GGT GGT
12394 TGG * 8 22/24 TGG TGG TGT TGG TGG TGT TGG TGG
13564 TAT * 12 33/36 TAT TAT AAT TAT TAT TAT TAT TAT TAT TAT TAC TGT
22984 CAC * 8 22/24 CAC CAC CAC CAC TAC CAA CAC CAC
29379 GCT * 14 38/42 GCT GCT GCT GCT GCT GCT GCT GCT ACT GCT GCT GAT GCC GTT
44806 GTG * 8 23/24 GTG ATG GTG GTG GTG GTG GTG GTG
74046 GCG * 7 19/21 GCG GCG GCT GCG GCG GCG GGG
85160 TTA * 7 20/21 TTA TTA TTA TTA TTA TTA TTG
88883 GCT * 7 19/21 GCT GCT GCT GCT GCT GCT GTC
114523 AGC * 7 19/21 AGC AGG AGG AGC AGC AGC AGC
163585 ATT * 11 31/33 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT GTG
177436 CCA * 8 22/24 CCA CCT CCA CCA CCA CCA GCA CCA
178635 CAG * 9 25/27 CAG CTG CAG CAG CAG CAG CAG CAG CAC
178775 GCA * 7 19/21 GCA GTT GCA GCA GCA GCA GCA
179061 CAG * 7 19/21 CAG CAG CTG CAG CAG CAG CAC
179094 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAA CAA
179928 CAG * 8 22/24 CAG CTG CAG CAG CAG CAA CAG CAG
179981 GCA * 7 19/21 GCA GCA GCA GCA GCA GCA ATA
180066 AGC * 8 22/24 AGC AGC AGC ATC AGC AGC AGC ATC
180552 CAG * 7 19/21 CAG CAG CAT CAG CAG CAG CAT
194262 AAT * 8 23/24 AAT TAT AAT AAT AAT AAT AAT AAT
195940 CAT * 16 44/48 CAT CAT CAT CAT CAT CAT CAT CAC CAT CAT CAT CAT CAT CAT CTT GAA
199813 CCG * 11 31/33 CCG CCG CCG CCG CCG CCG CCG CCG TCG CCG TCG
201546 TGT * 7 19/21 TGT TGT TGT TGT TGT TTT TGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 216949
Total number of repeats detected.............. 24
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 1 0 1 0 0 0 0 0 0 0 0 0 0
AGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TAT 1 0 1 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
GCT 2 1 0 1 0 0 0 0 0 0 0 0 0
GCG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 0 0 0 1 0 0 0 0 0 0 0 0
CAG 5 5 0 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CCG 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 1 ATT + 1 TTA + 1 TAT = 4
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 1 TGT = 1
0 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
2 AGC + 2 GCA + 5 CAG + 2 GCT + 0 CTG + 0 TGC = 11
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 1 CCA + 1 CAC + 1 GGT + 1 GTG + 1 TGG = 5
0 GGC + 1 GCG + 0 CGG + 0 GCC + 1 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7316095|gb|AE002620.1|AE002620 Drosophila melanogaster genomic scaffold 142000013386037, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7295611|gb|AE003572.1|AE003572 Drosophila melanogaster genomic scaffold 142000013386037 section 5 of 5, complete sequence
Position Repeat Coverage Repeat
2237 CTG * 15 42/45 CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG ATG CTG ATG CTG CAG
17612 ATA * 11 31/33 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATC AAA
18081 CAG * 7 19/21 CAG CAG CAG CAG CAG CAG AAC
21033 CAT * 10 27/30 CAT CAT CAT CAT CAT CAC CAC CAT CAT CAA
35917 ATG * 7 19/21 ATG ACG ATG GTG ATG ATG ATG
39198 ATG * 7 19/21 ATG CTG ATG ATG ATG CTG ATG
63344 CCT * 7 19/21 CCT CCC CCT CCT CCT CCT CCA
65250 AAG * 7 19/21 AAG AAG AAG AAG AAG AAG CGG
70148 CCA * 11 30/33 CCA CTA CCA TCA CCA CCA CCA CCA CCA CCA CTA
-----------------------------------------------------------------------------------------
Total sequence length......................... 79498
Total number of repeats detected.............. 9
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 0 1 0 0 0 0 0 0 0 0 0 0
ATG 2 2 0 0 0 0 0 0 0 0 0 0 0
CAT 1 0 1 0 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 1 0 0 1 0 0 0 0 0 0 0 0 0
CCA 1 0 1 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
1 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 1
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
2 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 1 CCT + 0 CTC + 0 TCC = 1
0 AGC + 0 GCA + 1 CAG + 0 GCT + 1 CTG + 0 TGC = 2
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 1 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295580|gb|AE003571.1|AE003571 Drosophila melanogaster genomic scaffold 142000013386037 section 4 of 5, complete sequence
Position Repeat Coverage Repeat
6364 ATA * 12 34/36 ATA ATA ATA ATA CTA ATA ATA ATA ATA CTA ATA ATA
17066 AGC * 8 22/24 AGC AGC AGC AGC AAC AAC AGC AGC
17092 CAG * 16 44/48 CAG CAG CAG CAG CAG CAG CAG CAG CAA CAG CAT CTG CAG CAG CAA CAG
17142 GCA * 7 19/21 GCA ACA GCA GCA GCA GCA ACA
18160 CCT * 7 20/21 CCT CCT CCT CCT CCT CCT CAT
27959 GGA * 11 30/33 GGA GCA GGA GGA GAA GGA GGA GGA GGA AGA GGA
42860 GCT * 7 19/21 GCT GCT GCT GCT GCT TTT GCT
56155 CGC * 7 19/21 CGC GGC CGC CGC AGC CGC CGC
56628 TGT * 8 22/24 TGT TGT TGT TGT TGC TGT TGT TAT
56803 CTG * 11 31/33 CTG GTG CTG CTG CTG CTG CTG CTG GTG CTG CTG
69434 CCA * 7 19/21 CCA TTA CCA CCA CCA CCA CCA
80667 TTG * 8 22/24 TTG TTG TTG TTG TTG TTG TTC GTG
80739 TTG * 8 22/24 TTG TTG TTG TTG TTG TTA TTG CTG
80837 CTG * 7 19/21 CTG ATG TTG CTG CTG CTG CTG
84269 TGT * 7 19/21 TGT TGC TGT TGT TGT TGT TCT
89786 TAG * 7 19/21 TAG TAA TAG TAA TAG TAG TAG
111524 CAA * 7 19/21 CAA AAA CAA CAA CCA CAA CAA
120400 AAC * 8 22/24 AAC AAC AAC AAG AAC AAC AAC AAT
131013 GCA * 7 19/21 GCA GCA GCA GCA GCT GCT GCA
132652 TTC * 7 19/21 TTC GTC TTC TTC TTC TTC TTG
133177 GCA * 8 22/24 GCA GCA ACA GCG GCA GCA GCA GCA
134412 GCA * 8 22/24 GCA TCA GCA TCA GCA GCA GCA GCA
134635 CAG * 11 30/33 CAG CAG CAG CAG CAA CAG CAA CAG CAG CAG CAA
134737 CAG * 7 19/21 CAG CAT CAG CAG CAG CAG CAA
143888 AGC * 12 33/36 AGC AGC AGC AGC AGC AAC AGC AGC AGC ACC AGC AAC
144013 CAG * 7 19/21 CAG CAG CAG CAG CAG CAT CAC
147605 CAC * 12 34/36 CAC CAC CAC CAC CAC CAC CAC CAC CAC CCA CAC CAC
149446 ACC * 7 19/21 ACC ACC ACA ACG ACC ACC ACC
149668 AGC * 9 25/27 AGC AGC AGC AAC AGC AGC AGC ACC AGC
158159 CTG * 10 27/30 CTG CTG CTG CTG CTG CTG CTG CTG CTC ATC
158834 GCT * 9 25/27 GCT GTT GCT GTT GCT GCT GCT GCT GCT
213497 TGA * 7 19/21 TGA CGA CGA TGA TGA TGA TGA
264229 TGC * 19 52/57 TGC TGC TAC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGT TGT TGC TGC TGC TGG CGC
281340 CCT * 7 19/21 CCT CCT CCT CCT CCT CTG CCT
281780 GCA * 8 22/24 GCA ACG GCA GCA GCA GCA GCA GCA
283450 TCC * 15 41/45 TCC TGC TCC TCC TCA TCC TCC TCC TCC TCC TCC TTC TCC TTC TCC
292130 AGC * 7 19/21 AGC AGC AGC AGT AGC AGG AGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 302246
Total number of repeats detected.............. 37
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 0 1 0 0 0 0 0 0 0 0 0 0
AGC 4 3 1 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAG 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TTC 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 1 0 0 0 0 1 0 0 0 0 0 0 0
TCC 1 0 0 1 0 0 0 0 0 0 0 0 0
GGA 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 5 5 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 4 2 1 0 1 0 0 0 0 0 0 0 0
CAC 1 0 1 0 0 0 0 0 0 0 0 0 0
CTG 3 1 2 0 0 0 0 0 0 0 0 0 0
CGC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 1 TTC + 0 TCT = 1
1 AAC + 0 ACA + 1 CAA + 0 GTT + 2 TTG + 2 TGT = 6
0 ATG + 1 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 1 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 1 GGA + 0 GAG + 2 CCT + 0 CTC + 1 TCC = 4
4 AGC + 5 GCA + 4 CAG + 2 GCT + 3 CTG + 1 TGC = 19
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
1 ACC + 1 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 3
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 1 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295563|gb|AE003570.1|AE003570 Drosophila melanogaster genomic scaffold 142000013386037 section 3 of 5, complete sequence
Position Repeat Coverage Repeat
16783 ATC * 7 19/21 ATC AAC ATC ATT ATC ATC ATC
29787 CAT * 17 47/51 CAT CAA CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAA CAT TGT
49470 CGT * 7 19/21 CGT CAT CGT CGT CGT CAT CGT
59898 CTT * 8 22/24 CTT CTT CTT CTT CTT CTT CTT GTG
101297 GAC * 7 19/21 GAC GAC GTC GAC GAC GAC GAG
121166 GTT * 7 19/21 GTT GTC GTT GTT GAT GTT GTT
127301 CAC * 7 19/21 CAC CAC CAC CAC TAC CAC CAA
206302 CAG * 7 19/21 CAG CAG CAG CAG TAG CAG TAG
206344 CAA * 7 19/21 CAA CAG CAA CAA CAG CAA CAA
214362 TGT * 7 19/21 TGT TAT TGT TGC TGT TGT TGT
214383 TGC * 8 22/24 TGC TGC TGC TGT TGC TGC TGC CGC
219375 TAT * 7 19/21 TAT TAT TAT TAT TAT TAT TTC
219908 TGC * 12 34/36 TGC TGT TGC TTC TGC TGC TGC TGC TGC TGC TGC TGC
226841 GCG * 7 19/21 GCG GCG GCT GCT GCG GCG GCG
238840 AAC * 8 22/24 AAC AAC AAC ACC AAC AAC AAC AGC
277018 GAT * 8 23/24 GAT GAT GAT GAT GAT GAT GAT CAT
296655 TGC * 12 33/36 TGC TGC TGT TGC TGC TGC TGC TGC TGC TGC GGC GGC
296906 CAG * 14 38/42 CAG CAG CAG CGG CAG CAG CAG CAG CAA CAG CAG CAG CAA CAT
-----------------------------------------------------------------------------------------
Total sequence length......................... 299012
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 3 1 2 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCG 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 0 0 0 1 0 0 0 0 0 0 0 0
CAG 2 1 0 1 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CGT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 1
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 1
1 AAC + 0 ACA + 1 CAA + 1 GTT + 0 TTG + 1 TGT = 4
0 ATG + 0 TGA + 1 GAT + 1 CAT + 1 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 2 CAG + 0 GCT + 0 CTG + 3 TGC = 5
0 ACG + 0 CGA + 1 GAC + 1 CGT + 0 GTC + 0 TCG = 2
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 1
0 GGC + 1 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295529|gb|AE003569.1|AE003569 Drosophila melanogaster genomic scaffold 142000013386037 section 2 of 5, complete sequence
Position Repeat Coverage Repeat
7307 CAG * 10 28/30 CAG CAA CAG CAG CAG CAG CAG CAG CAG CAA
18992 GGC * 7 19/21 GGC GGC GTC GGC GGC GGC GTC
19042 CGG * 7 19/21 CGG CGG CGG CGG CGG CGG CCT
24501 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CAA
26412 CTC * 7 19/21 CTC CTC GTG CTC CTC CTC CTC
61368 ATA * 88 239/264 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AGA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AGA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA GTA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA CTA ATA ATA ATA ATT ATA ATA ACC AAT AAG TGC TTG GAT TCA GTA GCG
90013 TGC * 11 30/33 TGC TGC TGC TGC TGC TGC TGC TGC TGG TTC TTC
98142 TAT * 9 25/27 TAT TAA TAT TTT TAT TAT TAT TAT TAT
98172 TAT * 15 41/45 TAT TAT TAT TAT TAT AAC TAT TAT TAT TAT TAT TAT AAT AAT TAT
98219 TTA * 8 22/24 TTA TTA TTA ATA TTA TTA TTA TAA
98244 TAT * 7 20/21 TAT TTT TAT TAT TAT TAT TAT
103925 TCC * 8 22/24 TCC TCC TGC TCC TCC TCC TCC GCC
108649 TCT * 8 22/24 TCT TCT TCT TCT TCT TCT TCT TTC
119680 GCT * 12 34/36 GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GTC
120417 TGC * 10 28/30 TGC TGC CTC TGC TGC TGC TGC TGC TGC TGC
137096 GTT * 7 19/21 GTT GTT GTT CTA GTT GTT GTT
137129 GTT * 9 25/27 GTT GTT GTT GTT GTT GTT GTT GTT TGT
147143 CTC * 9 26/27 CTC CTC CTC CTC CTC CTC GTC CTC CTC
147319 AGC * 8 22/24 AGC TGC AGC AGG AGC AGC AGC AGC
152711 TTA * 10 28/30 TTA TTA TTA TTA TTA TTA TTA TTA TTA GTT
210853 ATG * 7 20/21 ATG ATG ATA ATG ATG ATG ATG
212754 TAT * 7 19/21 TAT TAT TAT TAA TAT TAT TTT
235672 TTG * 7 19/21 TTG TTT TTG TTG TTG TTG ATG
252985 CAC * 7 20/21 CAC CAA CAC CAC CAC CAC CAC
257114 ATA * 8 22/24 ATA ATA ATA ATA ATA ATA ATA CAA
267931 GCT * 15 41/45 GCT GCC GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT TTG
-----------------------------------------------------------------------------------------
Total sequence length......................... 292406
Total number of repeats detected.............. 26
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATA 2 1 0 0 0 0 0 0 0 0 0 0 1
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 4 3 0 1 0 0 0 0 0 0 0 0 0
TTA 2 1 1 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 2 0 2 0 0 0 0 0 0 0 0 0 0
TCT 1 1 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 2 2 0 0 0 0 0 0 0 0 0 0 0
GGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCT 2 0 1 1 0 0 0 0 0 0 0 0 0
CAG 2 1 1 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 2 2 0 0 0 0 0 0 0 0 0 0 0
CGG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 2 ATA + 0 TAA + 0 ATT + 2 TTA + 4 TAT = 8
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 1 TCT = 1
0 AAC + 0 ACA + 0 CAA + 2 GTT + 1 TTG + 0 TGT = 3
1 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 2 CTC + 1 TCC = 3
1 AGC + 0 GCA + 2 CAG + 2 GCT + 0 CTG + 2 TGC = 7
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 1 CAC + 0 GGT + 0 GTG + 0 TGG = 1
1 GGC + 0 GCG + 1 CGG + 0 GCC + 0 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295493|gb|AE003568.1|AE003568 Drosophila melanogaster genomic scaffold 142000013386037 section 1 of 5, complete sequence
Position Repeat Coverage Repeat
19309 ATG * 7 19/21 ATG ATG ATG ACG ATG ATG ATA
39990 CAA * 8 22/24 CAA CAA CAC CAA CAA TAA CAA CAA
40030 AAC * 9 25/27 AAC AAC AGC AAC AAC AAC AAC AAC AAT
45347 CAA * 14 40/42 CAA CAA TAA CAA CAA CAA CAT CAA CAA CAA CAA CAA CAA CAA
103770 TGT * 10 28/30 TGT TGT TGT TGT TGT TGT TAT TGT TGC TGT
107258 GAT * 8 22/24 GAT GAT GAC AAT GAT GAT GAT GAT
107464 TTA * 7 19/21 TTA TTA TTA TTA TTA TTT TTT
150593 CCT * 7 19/21 CCT CCT CCT CAT CAT CCT CCT
151187 TGT * 7 20/21 TGT TGT TGC TGT TGT TGT TGT
166651 GGT * 10 27/30 GGT GGT GGT GGT GGT GGT GGT GCT GCT GCT
166681 GCT * 8 22/24 GCT GCT GCT GCT GCT GTT GCA GCT
170500 TTG * 9 25/27 TTG CTG TTG TTG TTT TTG TTG TTG TTG
187094 GCA * 9 25/27 GCA GCA GCA GCA GTC GCA GCA GCA GCA
187645 GCA * 7 19/21 GCA GCA GCA GCA ACA GCT GCA
187697 CAG * 12 33/36 CAG CTG CAG CAG CAC CAG CAG CAG CAG CAG CAG CAA
241098 AAC * 8 22/24 AAC AAA AAC AAC AGC AAC AAC AAC
256948 GCT * 7 19/21 GCT GCT GCT GCT GCC GCT GCC
-----------------------------------------------------------------------------------------
Total sequence length......................... 292926
Total number of repeats detected.............. 17
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 2 2 0 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 2 1 1 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 0 1 0 0 0 0 0 0 0 0 0 0
GCA 2 2 0 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 2 1 0 1 0 0 0 0 0 0 0 0 0
CAG 1 0 1 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 1
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
2 AAC + 0 ACA + 2 CAA + 0 GTT + 1 TTG + 2 TGT = 7
1 ATG + 0 TGA + 1 GAT + 0 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 1 CCT + 0 CTC + 0 TCC = 1
0 AGC + 2 GCA + 1 CAG + 2 GCT + 0 CTG + 0 TGC = 5
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 1 GGT + 0 GTG + 0 TGG = 1
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7316092|gb|AE002629.1|AE002629 Drosophila melanogaster genomic scaffold 142000013386033, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7295629|gb|AE003574.1|AE003574 Drosophila melanogaster genomic scaffold 142000013386033 section 2 of 2, complete sequence
Position Repeat Coverage Repeat
87284 TAT * 8 22/24 TAT TAT TAT TAT TAT TAT TAA TAG
87351 TAT * 7 19/21 TAT TAT TAT TAT TAT TTT TGT
87372 ATT * 10 28/30 ATT ATT ATT ATT ATT ATT ATT ATT ATA GTT
87409 ATT * 7 19/21 ATT ATT ATT ATT ATA ATT ATA
105132 AAT * 8 22/24 AAT AAT AAT AAT AAT AAA AGT AAT
105159 AAT * 11 31/33 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAA AAG
111525 ATG * 7 19/21 ATG ATG ATG ATG ATG ACT ATG
128584 TAT * 7 19/21 TAT TAT TAT TAT TAT ATT TAT
164399 CGA * 11 30/33 CGA GGA CGA CGA TGA CGA CGA CGA CGA GGA CGA
170713 CAA * 8 23/24 CAA CAA CAA CAA CAA CAA CAA CAG
177212 TGC * 11 30/33 TGC TGC TGC TGC TGC TGC TGC TGA GGC TGC TGG
177382 CTC * 7 19/21 CTC CTC CTG CTG CTC CTC CTC
226876 AAC * 7 19/21 AAC AGC AAC AAC AAC AGC AAC
243766 TGG * 7 19/21 TGG TGG TGC TGT TGG TGG TGG
245031 GGT * 10 27/30 GGT GGT GGA GGT GGT GGC GGT GGT GGT GGC
-----------------------------------------------------------------------------------------
Total sequence length......................... 274456
Total number of repeats detected.............. 15
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 2 1 1 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 2 1 1 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 3 3 0 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 1 0 1 0 0 0 0 0 0 0 0 0 0
GGT 1 0 1 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CGA 1 0 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
2 AAT + 0 ATA + 0 TAA + 2 ATT + 0 TTA + 3 TAT = 7
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
1 AAC + 0 ACA + 1 CAA + 0 GTT + 0 TTG + 0 TGT = 2
1 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 1
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 1 TGC = 1
0 ACG + 1 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 1 GGT + 0 GTG + 1 TGG = 2
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7295620|gb|AE003573.1|AE003573 Drosophila melanogaster genomic scaffold 142000013386033 section 1 of 2, complete sequence
Position Repeat Coverage Repeat
56716 TAT * 7 19/21 TAT TAT TAT TAT TAT TAT ATT
69859 TAA * 7 20/21 TAA TAA TAA TAA TAA TAA AAA
84524 ATT * 7 19/21 ATT ATT AGT ATT ATA ATT ATT
103012 CTG * 12 34/36 CTG TCG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG
117891 CCA * 7 19/21 CCA CCA CCC CCA CCA CCC CCA
121875 GGT * 7 20/21 GGT GGT GGT GGT GGT GCT GGT
135996 CAA * 7 19/21 CAA CAT CAA CAA CAT CAA CAA
138977 CAG * 8 23/24 CAG AAG CAG CAG CAG CAG CAG CAG
141008 ACC * 7 19/21 ACC AGC AAC ACC ACC ACC ACC
141993 CCA * 8 23/24 CCA CCA CCA CCA CCA CCA CCA CAA
152502 CAT * 7 19/21 CAT CAT CAT CAT CCT CAT CAG
165540 ATT * 14 38/42 ATT ATT ATT ATT ATT ATT ATT ATT ACT ATT ATT ATA AAT ATA
170963 AGC * 7 21/21 AGC AGC AGC AGC AGC AGC AGC
186455 CAG * 7 19/21 CAG CAG CAG CAG CAA AAG CAG
187003 ACG * 8 22/24 ACG ACT ACG ATG ACG ACG ACG ACG
214228 ATT * 56 152/168 ATT TTT ATT ATT ATT ATT AAT ATT ATT TTT ATT ATT ATT ATT AAT ATT ATT TTT ATT ATT ATT GTT ATT ATT GTT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ACT TCT ATT ATG ATT ATT ATA ATT ATT ATT ATG TAA
214396 TAT * 8 22/24 TAT AAT TAT TAT TAT TTT TAT TAT
214445 TAT * 14 39/42 TAT TAT TAT TAT TAT CAT TAT TAA TAT TAT TAT TAT TTT TAT
214487 TTA * 19 53/57 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTT TCA TTA TTA TAA TTA TTA TTT
-----------------------------------------------------------------------------------------
Total sequence length......................... 262131
Total number of repeats detected.............. 19
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
ATT 3 1 0 1 0 0 0 0 0 0 0 0 1
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACG 1 1 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 3 2 0 1 0 0 0 0 0 0 0 0 0
TTA 1 0 0 0 0 1 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CTG 1 0 1 0 0 0 0 0 0 0 0 0 0
CCA 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 1 TAA + 3 ATT + 1 TTA + 3 TAT = 8
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 1 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 0 TGA + 0 GAT + 1 CAT + 0 ATC + 0 TCA = 1
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
1 AGC + 0 GCA + 2 CAG + 0 GCT + 1 CTG + 0 TGC = 4
1 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 1
1 ACC + 2 CCA + 0 CAC + 1 GGT + 0 GTG + 0 TGG = 4
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7288912|gb|AE002813.1|AE002813 Drosophila melanogaster genomic scaffold 142000013385227, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 2620
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289135|gb|AE002822.1|AE002822 Drosophila melanogaster genomic scaffold 142000013385417, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1638
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289301|gb|AE002567.1|AE002567 Drosophila melanogaster genomic scaffold 142000013385554, complete sequence
Position Repeat Coverage Repeat
23030 TCA * 8 23/24 TCA TCA TCA TCA TCA TCA TAA TCA
28964 GAT * 7 19/21 GAT AAT GAT GAT GAT GAT GTT
40174 TGC * 7 19/21 TGC TGC TGC TGT TGC TGC TGT
40212 CTG * 10 27/30 CTG CTG TTG CTG CTT CTG CTG CTG CTG TTG
43205 TGC * 7 19/21 TGC TGC TGC TGT TGC TGC TGT
43243 CTG * 9 25/27 CTG CTG TTG CTG CTT CTG CTG CTG CTG
-----------------------------------------------------------------------------------------
Total sequence length......................... 84373
Total number of repeats detected.............. 6
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 2 1 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 1 GAT + 0 CAT + 0 ATC + 1 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 2 CTG + 2 TGC = 4
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7289214|gb|AE002930.1|AE002930 Drosophila melanogaster genomic scaffold 142000013385493, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1282
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7289226|gb|AE003341.1|AE003341 Drosophila melanogaster genomic scaffold 142000013385503, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1242
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7316107|gb|AE002566.1|AE002566 Drosophila melanogaster genomic scaffold 142000013386054, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------------
Genomic sequence
gi|7291169|gb|AE003451.1|AE003451 Drosophila melanogaster genomic scaffold 142000013386054 section 35 of 35, complete sequence
Position Repeat Coverage Repeat
15028 TGC * 7 19/21 TGC TGC TGC TGC TGC TGC TCG
18369 ATG * 7 20/21 ATG ATG ATG ATG CTG ATG ATG
20784 ATT * 11 30/33 ATT ATT ATT ATT ATT ATT GTT ATT AAT GTT ATT
20817 GTT * 11 30/33 GTT ATT ATT GTT GTT GTT GTT GTT GTT TTT GTT
20998 GTT * 7 19/21 GTT GTT GTT GCT GTT GCT GTT
30425 CAA * 7 19/21 CAA CAA CAA CAG CAA CAA CAC
31948 TGT * 7 19/21 TGT TGT TCT TCT TGT TGT TGT
46828 ATA * 7 19/21 ATA ATA ATA ATG AAA ATA ATA
52346 TCG * 8 22/24 TCG TCG TCG TCC TCG TCG TCG TCC
52628 TGC * 8 22/24 TGC AGC TGC TGC TGC TGC TGC TGT
52655 TGC * 8 22/24 TGC TGC TGT TGC TGC TGC TGC TGG
52775 TGC * 7 19/21 TGC TGT TGC TGC TGA TGC TGC
52873 CTG * 7 19/21 CTG TTG CTG CTG CTG TTG CTG
56531 TCG * 8 22/24 TCG TCA TCG TCG TCG TCC TCG TCG
56817 CTG * 11 30/33 CTG CTG CTG CTG CGG CTG CTG CTG CCG CCG CTG
59783 AGG * 10 27/30 AGG AGG AGG AGG AGA AGG AGA AGG AGG CGG
62001 TGC * 12 33/36 TGC TGC TGT TGC TGC TGC TGC TGA TGC TGG TGC TGC
62346 GCT * 7 19/21 GCT GCT GCC GCC GCT GCT GCT
62499 TCC * 7 19/21 TCC TCG TCC TCC TCC TCC CCC
62640 TGC * 8 22/24 TGC TGC TGC TGC TCC TGG TGC TGC
62793 TTG * 8 22/24 TTG TTG TTG TTA TTA TTG TTG TTG
62943 TCC * 7 19/21 TCC TGC TCC TCC TCC TCC TCT
63075 TTG * 10 28/30 TTG TTA TTG TTG TTG TTG TTA TTG TTG TTG
63180 GCT * 10 27/30 GCT GCT GCT GCA GCT GCT GCT GCG GCT GCC
63385 TGC * 20 55/60 TGC TGC TGC TGC TGC TGC TGC TAC TGC AGC TGC TGC TGC TGC TGC TGC TGC GAC TGC AGC
63507 GTT * 7 19/21 GTT GTT GTT GTT GTT GAT GCT
63673 TGC * 8 22/24 TGC TGG TGC TGC TGC TGT TGC TGC
63767 CTT * 7 19/21 CTT CTG CTT CTG CTT CTT CTT
66205 CAG * 13 36/39 CAG CAG CAG TAG CAG TAG CAG CAG CAG CAG CAG CGG CAG
83790 GTC * 7 19/21 GTC CTC GTC GTC GTC GTC GTT
90698 GCA * 8 22/24 GCA GCA GCA GCA GTA GCA GCA ACA
116195 CAA * 7 19/21 CAA CAA CAA TAA CAA TAA CAA
119044 GCA * 9 25/27 GCA GCA GAA GCA GCA GCA GCA GCA ACA
125761 GAT * 11 30/33 GAT GAT GAT GAT GAT GAT GAT GAT GCT GGT GGT
145439 CAG * 15 41/45 CAG CAG CAG CAG CAG CAG CAA CAG CAG AAG CAA CAG CAG CAG CAA
147011 CAC * 7 19/21 CAC CAT CAC CAC CAC CAT CAC
147038 CAG * 11 31/33 CAG CAG CAG CAG CAG CAG CAG CAG CAG GAC CAG
147073 GCA * 7 19/21 GCA GCA GCA GCC GCA TCA GCA
147169 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CAA
147200 CAG * 11 30/33 CAG CAA CAC CAG CAG CAG CAG CAG CAG CAA CAG
147326 CAG * 7 19/21 CAG CAG CAA CAG CAA CAG CAG
147350 CAG * 7 19/21 CAG CAG CAA CAG CAG CAA CAG
147701 CAC * 8 22/24 CAC CAC CAC CAT CAT CAC CAC CAC
147728 CAG * 10 27/30 CAG CAG CAT CAG CAG AAG CAG CAG CAG CCG
148124 CAG * 17 47/51 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAA CAA CAG CAG CAG CAA CAT
148307 CAG * 12 33/36 CAG CAA CAT CAG CAG CAG CAG CAG CAG CAG CAG CAA
148667 CAG * 8 22/24 CAG CAG CAG CAG CAG CAA CAG CGG
153594 CGG * 7 21/21 CGG CGG CGG CGG CGG CGG CGG
161895 CAT * 7 19/21 CAT CAT CAT CAT CTT CAT CTT
162084 GCT * 7 19/21 GCT GTT GGT GCT GCT GCT GCT
163574 GCT * 13 36/39 GCT ACT ACT GCT GCT GCT GCT GCT GCT GCT ACT GCT GCT
164400 TGA * 7 19/21 TGA TGA TGA TGG TGA TGA TGG
164427 TGA * 7 19/21 TGA TGG TGA TGA TGA TGA TGT
169250 CAT * 9 25/27 CAT CAT CAT CAT CAT CAT CAT CGG CAT
173599 AGG * 10 27/30 AGG AGG AGG AGG AGG AGG AGG AGG GAG AGA
198446 AAC * 7 19/21 AAC AAT AAC AAC AAC AGC AAC
199885 AGC * 7 19/21 AGC AGC AAC AGC AGC AGT AGC
202634 AAC * 7 19/21 AAC AAA AAC AAC AAC AAC AGC
213764 TGC * 8 23/24 TGC TGC TGC TGC TGC TGC TGC TGG
217989 GCA * 7 19/21 GCA GCA ACA ACA GCA GCA GCA
219016 TTA * 7 19/21 TTA TTA TTA TGA TTA TTA TTG
-----------------------------------------------------------------------------------------
Total sequence length......................... 220623
Total number of repeats detected.............. 61
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 2 2 0 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 1 0 1 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGG 2 0 2 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 2 1 1 0 0 0 0 0 0 0 0 0 0
TGA 2 2 0 0 0 0 0 0 0 0 0 0 0
TGT 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 9 7 1 0 0 1 0 0 0 0 0 0 0
TCG 2 2 0 0 0 0 0 0 0 0 0 0 0
TCC 2 2 0 0 0 0 0 0 0 0 0 0 0
GAT 1 0 1 0 0 0 0 0 0 0 0 0 0
GTT 3 2 1 0 0 0 0 0 0 0 0 0 0
GTC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 4 4 0 0 0 0 0 0 0 0 0 0 0
GCT 4 2 1 1 0 0 0 0 0 0 0 0 0
CAA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 11 4 4 2 1 0 0 0 0 0 0 0 0
CAC 2 2 0 0 0 0 0 0 0 0 0 0 0
CTT 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 2 1 1 0 0 0 0 0 0 0 0 0 0
CGG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 1 ATT + 1 TTA + 0 TAT = 3
0 AAG + 0 AGA + 0 GAA + 1 CTT + 0 TTC + 0 TCT = 1
2 AAC + 0 ACA + 2 CAA + 3 GTT + 2 TTG + 1 TGT = 10
1 ATG + 2 TGA + 1 GAT + 2 CAT + 0 ATC + 0 TCA = 6
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
2 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 2 TCC = 4
1 AGC + 4 GCA + 11 CAG + 4 GCT + 2 CTG + 9 TGC = 31
0 ACG + 0 CGA + 0 GAC + 0 CGT + 1 GTC + 2 TCG = 3
0 ACC + 0 CCA + 2 CAC + 0 GGT + 0 GTG + 0 TGG = 2
0 GGC + 0 GCG + 1 CGG + 0 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7291133|gb|AE003450.1|AE003450 Drosophila melanogaster genomic scaffold 142000013386054 section 34 of 35, complete sequence
Position Repeat Coverage Repeat
5627 TGC * 8 23/24 TGC TGC TGC TGT TGC TGC TGC TGC
5675 TGC * 8 22/24 TGC TGC CGC TGC TGT TGC TGC TGC
5819 TGC * 9 25/27 TGC TGC TGC TGG CGC TGC TGC TGC TGC
12099 CTG * 11 30/33 CTG CTG CGG CTT CTG CTG CTG CTG CTG CTG TTG
25711 TGC * 7 19/21 TGC TGC TGC TGT TGC TGC TGT
25749 CTG * 10 27/30 CTG CTG TTG CTG CTT CTG CTG CTG CTG TTG
28742 TGC * 7 19/21 TGC TGC TGC TGT TGC TGC TGT
28780 CTG * 9 25/27 CTG CTG TTG CTG CTT CTG CTG CTG CTG
50028 TCA * 14 40/42 TCA TCA TCA TCA TCG TCG TCA TCA TCA TCA TCA TCA TCA TCA
50186 TAT * 7 20/21 TAT TAT TAT TAT GAT TAT TAT
61658 CTG * 8 22/24 CTG TTG CTG CTG CTG CTG CTG CAG
71405 CAA * 8 23/24 CAA CAA CAA CAA CAA CAA CAG CAA
72137 AGC * 12 34/36 AGC AGC AAA AGC AGC AGC AGC AGC AGC AGC AGC AGC
83462 TAT * 8 22/24 TAT TTT TAA TAT TAT TAT TAT TAT
89561 CAC * 12 33/36 CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC GGG
100677 GTG * 7 19/21 GTG CGG GTG GTG GTG GTG GTG
100754 GGA * 8 22/24 GGA GGA GGA GGA GGA GCA GGA GCA
100778 GCA * 7 20/21 GCA GCA GCA GCA GCA GCA GGA
121887 AGC * 7 19/21 AGC AGC AAC AAC AGC AGC AGC
126242 GCT * 7 19/21 GCT GCT GCC GCC GCT GCT GCT
140241 CCG * 7 19/21 CCG CCG CCG CCG CCA CCG CTG
140353 AAC * 7 19/21 AAC AAC AAC AAC AAC AGC GAC
160940 CAG * 7 19/21 CAG CAG CAG CAG CAG CAG AAA
161460 AAT * 7 19/21 AAT TAT AAT AAT TAT AAT AAT
176539 GCA * 7 19/21 GCA TCA GCA GCA GCA GTA GCA
205589 GCT * 7 19/21 GCT CCT GCT CCT GCT GCT GCT
210783 GAA * 7 20/21 GAA GAA GAA GAA GAA GAA AAA
217948 CTG * 7 19/21 CTG CTG TTG CTG TTG CTG CTG
218115 CTC * 7 20/21 CTC CTC CTC CTC CTC CTC CGC
218220 GCT * 8 22/24 GCT GTT GCT GCT GCT GTT GCT GCT
218249 TGC * 7 19/21 TGC TGC TGC TGC TGC TGA AGC
219576 GCC * 7 19/21 GCC GCT GCC GCC GCC GCC GCT
219814 GCT * 9 25/27 GCT GCT GCT GCT GTT GCT GCT GCT GAT
219891 TGC * 7 19/21 TGC TGC TGC TGT TGC TGC TGG
219936 TGC * 7 19/21 TGC TGC TGC TGC TGC AAC TGC
220175 CTG * 8 22/24 CTG CTG CTG TTG CTG CTG CTG TTG
220408 GCT * 7 19/21 GCT GCT GTT GCT GTT GCT GCT
220569 TGC * 8 22/24 TGC TGC TGC TGT TGC TGC TGC TGA
223056 TGC * 7 19/21 TGC TGC TGC TGT TGC TGC TGA
228748 GAG * 7 19/21 GAG GAG GAG GAG GAC GAG AAG
249713 ATC * 13 36/39 ATC CCC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AGC
251636 TGC * 7 19/21 TGC CGC CGC TGC TGC TGC TGC
260131 CAG * 9 25/27 CAG CAG TAG CAG CAG CAG CAA CAG CAG
264560 GCA * 7 19/21 GCA GCA GCA GCA GCA GCC GCG
278024 CAT * 11 30/33 CAT CAT CAC CAT CAT CAT CAT CAT CAC CAT AAT
282196 ACA * 9 25/27 ACA ACA ACA ACA ACA ACG ACA GCA ACA
284821 CAA * 8 22/24 CAA CAG CAA CAA CAA CAA CAA AAA
-----------------------------------------------------------------------------------------
Total sequence length......................... 300732
Total number of repeats detected.............. 47
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 0 0 1 0 0 0 0 0 0 0 0 0
AGC 2 1 1 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 2 2 0 0 0 0 0 0 0 0 0 0 0
TGC 11 11 0 0 0 0 0 0 0 0 0 0 0
TCA 1 0 0 1 0 0 0 0 0 0 0 0 0
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 3 3 0 0 0 0 0 0 0 0 0 0 0
GCT 5 5 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAT 1 0 1 0 0 0 0 0 0 0 0 0 0
CAG 2 2 0 0 0 0 0 0 0 0 0 0 0
CAC 1 0 1 0 0 0 0 0 0 0 0 0 0
CTG 6 4 2 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 2 TAT = 3
0 AAG + 0 AGA + 1 GAA + 0 CTT + 0 TTC + 0 TCT = 1
1 AAC + 1 ACA + 2 CAA + 0 GTT + 0 TTG + 0 TGT = 4
0 ATG + 0 TGA + 0 GAT + 1 CAT + 1 ATC + 1 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 1 GGA + 1 GAG + 0 CCT + 1 CTC + 0 TCC = 3
2 AGC + 3 GCA + 2 CAG + 5 GCT + 6 CTG + 11 TGC = 29
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 1 CAC + 0 GGT + 1 GTG + 0 TGG = 2
0 GGC + 0 GCG + 0 CGG + 1 GCC + 1 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7291099|gb|AE003449.1|AE003449 Drosophila melanogaster genomic scaffold 142000013386054 section 33 of 35, complete sequence
Position Repeat Coverage Repeat
48681 CTG * 7 19/21 CTG CTG CTG CTG CTG CTG CAC
48805 TGC * 7 20/21 TGC TGC TGC TGC TGC TGC TGG
50216 GCT * 7 19/21 GCT GTT GCT GCT GCT GCT CCT
51069 TGC * 14 40/42 TGC TGT TGT TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
51548 CTG * 7 20/21 CTG CTG CTG ATG CTG CTG CTG
57523 GCA * 7 19/21 GCA GCA GCA GTA GCA GCG GCA
58594 TGA * 11 30/33 TGA AGA TAA TGA TGA TGA TGA TGA TGA TGA AGA
67014 GTA * 11 30/33 GTA GTA GTA GTA GTA GTA GTA GTT GTA AAA GTA
67049 AGT * 8 22/24 AGT AGT AGT AGT AGT AGT AGC AGA
67075 TAG * 7 19/21 TAG TAG TAG TAG TAC TAG AAG
67102 TAG * 12 33/36 TAG TAG TAG TAG TAG TAG TAG TAG CAG AAT TAG TAG
67183 TAG * 12 33/36 TAG TAG TAG TAG TAG TAG TAG TAG CAG AAT TAG TAG
67324 TAG * 8 22/24 TAG TAG CAG AAG TAG TAG TAG TAG
67955 CAA * 8 22/24 CAA CAA CAA CAA CAA CAA CAT CAC
68937 TGC * 10 28/30 TGC TGC CGC TGC TGC TGC TGC TGT TGC TGC
69581 CAG * 11 30/33 CAG CAG CAG CAG CAG CAG CAA CAA CAG CAG CAA
69749 AAC * 7 19/21 AAC AAC AAT AAA AAC AAC AAC
69773 AGC * 8 22/24 AGC AGC AGC AGC AGC AAC AGC AAC
69808 CAA * 7 19/21 CAA CAA CAA CAA CAG TAA CAA
79801 GCA * 11 30/33 GCA GCA GCA GCA GCA ACA GCA GCA GCA ACA TCA
85719 AAC * 9 25/27 AAC TAC AAC TAC AAC AAC AAC AAC AAC
85782 CAA * 11 30/33 CAA CAA CAA CAA CAA CAA CAA CAG CCA CTA CAA
86143 ACA * 7 19/21 ACA ACA ACA AGC ACA ACA ACA
86328 AAC * 7 19/21 AAC CAC AAC AAC AAC AAC AGC
86352 CAA * 8 22/24 CAA GAA CAG CAA CAA CAA CAA CAA
90297 GAT * 7 19/21 GAT GAG GAT GAA GAT GAT GAT
91391 AAC * 11 30/33 AAC CAC ATC AAC AAC AAC AAC AAC AAC ATC AAC
92635 ATG * 11 30/33 ATG ATA ATG ATG AAG ATG ATG ATG ATG ATG ATA
92967 GAG * 8 22/24 GAG GAG AAG GAG GAG GAG GAG GAA
93004 CAA * 8 22/24 CAA CCA CAA CAA CAA CAA CCA CAA
93197 CAA * 10 27/30 CAA CAG CAA CAA CAA CAA CAA CAA CAC CAC
94056 GAG * 7 19/21 GAG GAG GAA GAC GAG GAG GAG
94098 GAA * 7 19/21 GAA GAA GAG GAT GAA GAA GAA
94771 CAC * 7 19/21 CAC CAC CAT CAC CAG CAC CAC
96599 AAC * 7 19/21 AAC GAC AAC AAC GAC AAC AAC
100257 CAG * 8 22/24 CAG CAA CAG CAG CAG CGG CAG CAG
100394 GCA * 7 19/21 GCA GCA GCA GCA GCA GCA TCC
100445 AGC * 7 19/21 AGC AAC ATC AGC AGC AGC AGC
109608 GTC * 7 19/21 GTC GTC GTC ATC ATC GTC GTC
109640 GGT * 7 19/21 GGT GGT GGT GGT GGT GCT GCT
111575 AAC * 7 19/21 AAC GAC AAC AAC AAC AAC GAC
120229 TTG * 7 19/21 TTG TTG AAG TTG TTG TTG TTG
130627 TCC * 8 22/24 TCC TCC TCC TCC TCC TCC ACC ACC
155723 ACA * 7 20/21 ACA ACA ATA ACA ACA ACA ACA
159510 AAT * 7 19/21 AAT AAT AAT AAT AAT AAA AAA
163081 CTG * 10 28/30 CTG TTG TTG CTG CTG CTG CTG CTG CTG CTG
165125 CAG * 12 33/36 CAG CAG CAG CAG CAG TCG CAG CAG CAG CAG CAG CAA
167084 GTT * 7 19/21 GTT GTT GTT TTT GTT CTT GTT
167109 TTG * 10 27/30 TTG TTG TTG TTG CTT TTG TTG TTG TTG TGG
198765 GAT * 10 28/30 GAT AAC GAT GAT GAT GAT GAT GAT GAT GAT
200659 CAG * 11 30/33 CAG CAG CAG CAG CAG CAG CAG CAG CAG TGG CAA
205398 GCT * 7 20/21 GCT GCT GCT GCT GCT GCT GCC
208599 TGC * 9 25/27 TGC TGC TGC TGT TGC TAC TGC TGC TGC
225785 AAG * 7 19/21 AAG AAG AAG AGG AAG AGG AAG
233445 CAA * 12 33/36 CAA CAA CAA CAA CAA CAA TAA CAA TAA CAA CAA CAG
237369 TGA * 10 27/30 TGA GGA TGA TGT TGA TGA TGA TGA TGA TGT
239648 CAG * 7 19/21 CAG CCG GAG CAG CAG CAG CAG
246714 TTG * 8 23/24 TTG TCG TTG TTG TTG TTG TTG TTG
257850 GCC * 8 22/24 GCC GCT GCC GCC GCC GCC GCC GCT
271023 CAA * 7 20/21 CAA CAA CAA CAA CAA CAA CAT
273903 CAG * 11 31/33 CAG CAG CAG CAG CAG CAG CAG CAG CAG CTC CAG
277986 ACC * 8 23/24 ACC ACC ACC ACC ACC ACC ACC AAC
282758 CCG * 7 19/21 CCG CCG CCG CCG CCG CCA CCA
285441 TTG * 8 22/24 TTG TTC TTG TTG TTG TTG TTG TTC
287885 TTG * 8 22/24 TTG TTG TTG TTG TTG TTG CTG TTA
289486 TTG * 7 19/21 TTG TTG TTG TTG TTA TTG TTA
289627 TGC * 12 33/36 TGC TGC TGT TGT TGC TGC TGC TGC TGC TGT TGC TGC
293893 TTG * 9 25/27 TTG TTG TTG TTG TTA TTG TTA TTG TTG
295893 ACA * 7 19/21 ACA ACA ACA ACA ACA ACG AGA
-----------------------------------------------------------------------------------------
Total sequence length......................... 299786
Total number of repeats detected.............. 69
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 6 5 1 0 0 0 0 0 0 0 0 0 0
ATG 1 0 1 0 0 0 0 0 0 0 0 0 0
AGT 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 2 0 0 0 0 0 0 0 0 0 0 0
ACA 3 3 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAG 4 2 2 0 0 0 0 0 0 0 0 0 0
TTG 7 6 1 0 0 0 0 0 0 0 0 0 0
TGA 2 0 2 0 0 0 0 0 0 0 0 0 0
TGC 5 2 2 1 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 2 1 1 0 0 0 0 0 0 0 0 0 0
GAG 2 2 0 0 0 0 0 0 0 0 0 0 0
GTA 1 0 1 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTC 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 3 2 1 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 8 5 3 0 0 0 0 0 0 0 0 0 0
CAG 6 2 4 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 3 2 1 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 1
1 AAG + 0 AGA + 1 GAA + 0 CTT + 0 TTC + 0 TCT = 2
6 AAC + 3 ACA + 8 CAA + 1 GTT + 7 TTG + 0 TGT = 25
1 ATG + 2 TGA + 2 GAT + 0 CAT + 0 ATC + 0 TCA = 5
1 AGT + 1 GTA + 4 TAG + 0 ACT + 0 CTA + 0 TAC = 6
0 AGG + 0 GGA + 2 GAG + 0 CCT + 0 CTC + 1 TCC = 3
2 AGC + 3 GCA + 6 CAG + 2 GCT + 3 CTG + 5 TGC = 21
0 ACG + 0 CGA + 0 GAC + 0 CGT + 1 GTC + 0 TCG = 1
1 ACC + 0 CCA + 1 CAC + 1 GGT + 0 GTG + 0 TGG = 3
0 GGC + 0 GCG + 0 CGG + 1 GCC + 1 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7291077|gb|AE003448.1|AE003448 Drosophila melanogaster genomic scaffold 142000013386054 section 32 of 35, complete sequence
Position Repeat Coverage Repeat
6043 CCT * 7 19/21 CCT CCA CCA CCT CCT CCT CCT
6067 CCT * 7 19/21 CCT GCT CCT CCT CCT CCA CCT
19363 CAA * 7 20/21 CAA CAA CAA CAA CAA CAA CGA
20188 CAA * 7 19/21 CAA CAG TAA CAA CAA CAA CAA
27824 TTG * 7 19/21 TTG ATT TTG TTG TTG TTG TTG
31333 TGG * 7 19/21 TGG TGG TGG TGC TGG TGC TGG
31863 TGC * 8 22/24 TGC TGT TGC TGC TGT TGC TGC TGC
32658 CTG * 7 20/21 CTG CTG CTG TTG CTG CTG CTG
32757 CTG * 11 30/33 CTG TTG CTG TTG CTG CTG CTG CTG CTG CTG TTG
39476 CCA * 7 20/21 CCA CCA CCA CCA CCA CCA CCG
40054 CTG * 12 33/36 CTG CTG CTG CTG TTG TTG CTG CTG CTG CTG CTG TTG
40141 CTG * 7 19/21 CTG CTG CTG CTG CTG TTG TTG
40658 TGC * 7 19/21 TGC TGC TGC TGT TGC TGC TGG
41728 CTG * 9 25/27 CTG CTG TTG CTG CTG CTG CTG CTG TTG
41910 GCT * 7 19/21 GCT GCT GGT TCT GCT GCT GCT
41936 TGC * 7 19/21 TGC TGC TGC TGT TGC TGC TGA
42472 CTG * 7 20/21 CTG CTG CTG TTG CTG CTG CTG
42504 GCT * 8 23/24 GCT GCT GTT GCT GCT GCT GCT GCT
42764 TGC * 8 22/24 TGC TGC TGT TGC TGC TGC TGT TGC
44783 TTG * 7 19/21 TTG TTG CAG TTG TTG TTG TTG
45102 CTC * 7 19/21 CTC CTC CTG CTC CTG CTC CTC
45215 TGC * 8 22/24 TGC TGC TGC TGC TGA TGC TGC TGT
45256 CTG * 7 20/21 CTG CTG CTG CTG CTG CTG CCG
45766 TGC * 7 19/21 TGC TGC TGC TGC TGC TGC CGA
52552 ATG * 7 19/21 ATG ATG ATG ATG ATG ATC ATA
55374 AAC * 8 22/24 AAC GAC AAC AAC AAC AGC AAC AAC
56523 CAG * 7 19/21 CAG CAA CAG CAG CAG CAG CAA
56550 CAG * 10 27/30 CAG CAG CAA CAG CAG CAG CAA CAG CAG CAA
60423 AGG * 15 41/45 AGG AGG CGG AGA AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG GTG
62970 ACA * 7 20/21 ACA ACA ACA ACA ACA ACA ACT
66567 AGC * 14 40/42 AGC AGC AGC AGC AGC AGC AGC AGC AGC AGC AGC AGC AAC AGT
75805 AAC * 8 22/24 AAC AAC AAC CAC AAG AAC AAC AAC
76808 TCA * 7 19/21 TCA TCA TCA TCA TCG TCA GCA
78374 GCA * 7 21/21 GCA GCA GCA GCA GCA GCA GCA
81912 TTG * 12 34/36 TTG CTG TTG TTG TTG TTG TTG TTG CTG TTG TTG TTG
82019 TGT * 7 20/21 TGT TGT TGT AGT TGT TGT TGT
84134 CAG * 8 22/24 CAG CAG CAA CAA CAG CAG CAG CAG
85564 CTG * 8 22/24 CTG CTG CCG CTG CTG CTG CTG TTG
86470 CAT * 7 19/21 CAT CAT CAT CAT CAT CAG CAG
86933 TCG * 7 20/21 TCG TCG TCC TCG TCG TCG TCG
90990 TTG * 7 19/21 TTG TTG TTG CTG TTG TTT TTG
92013 CAG * 10 28/30 CAG CAG CAG CAG CAG CAG CCG CAG CAG CAA
92063 GCA * 10 27/30 GCA GCA GCA GCA ACA TCA GCA GCA GCA GGA
98610 GAT * 10 28/30 GAT GAT GAT GGT GAT GAT GAT GAC GAT GAT
100742 ACA * 8 22/24 ACA ACA ACA ACA ACA ACA ACA AAT
101309 AGC * 8 22/24 AGC AAC AGC AGC AGG AGC AGC AGC
101350 CAG * 7 19/21 CAG CAG CAG CAA CAG CGG CAG
113356 TGT * 7 19/21 TGT TGT TGT TGT TAT TGT TGC
114635 CGG * 7 19/21 CGG CGG TGG TGG CGG CGG CGG
116449 CAG * 27 73/81 CAG CAG CAG CAG CAG CAG CAA CAT CAG CAG CAA CAG CAG CAA CAG CAG CAG CAG CAG CAT CAA CAG CAG CAA CAG CAG CAA
116536 CAG * 12 33/36 CAG CAG CAG CAG CAA CAT CAG CAG CAG CAG CAG CAA
132761 TGC * 8 22/24 TGC TGC TGC GGC TGC TTC TGC TGC
132891 TTG * 7 19/21 TTG TTG TTG TTG TTG TTG TAT
135881 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC TTC TTC
153796 TCA * 8 23/24 TCA TCA TCA TCA GCA TCA TCA TCA
177048 CAA * 11 30/33 CAA CAA CAA CAA CAA CAA CAA CGA CAC CAA CAT
186694 GCA * 11 30/33 GCA GCA GCA GCA GCA GCA GCA GCA CCA CCA CCA
186727 CCA * 12 33/36 CCA CCA CCA CCA CCA CCA CCA CCA CCA CTA GCA GCA
191706 ACA * 7 20/21 ACA ACA ACA ACA ACA AAA ACA
193988 ATT * 9 25/27 ATT ATT ATT ATT ATT ATT GTT ATT ACT
198840 GGT * 9 25/27 GGT GGT GGT GGT GGT GGT GGT GGT TAT
205951 TGC * 7 19/21 TGC TGC TGC TGC TGT TGT TGC
209569 TGC * 8 22/24 TGC TGC TGC TGG TGC TTC TGC TGC
210867 GTT * 10 27/30 GTT GTC GTG GTT GTT GTT GTT GTT GTT GCT
217007 TGT * 10 27/30 TGT TGT TGC AGT TGT TGT TGT TGT TGT TGC
219231 AAT * 7 19/21 AAT AAA TAT AAT AAT AAT AAT
230443 ATG * 7 19/21 ATG ATG ATG ATG TTG GTG ATG
238758 CCT * 8 22/24 CCT CCT CCT CCT CCT CCT CCT GCA
241899 ACC * 7 19/21 ACC ACC ACC ACC ACC ACA ACT
254350 CAA * 8 22/24 CAA CAA CAA CAA CAA CAG CAA CGA
254378 AAC * 10 28/30 AAC AAC AAC AAC AAC AAC AAC AAC AGC AAA
266774 GGT * 7 19/21 GGT GGT GGT GGT GGT GAT GGG
271459 CAA * 7 19/21 CAA CAA CAA CGA TAA CAA CAA
276160 AAC * 7 19/21 AAC AAC AAG AGC AAC AAC AAC
-----------------------------------------------------------------------------------------
Total sequence length......................... 310399
Total number of repeats detected.............. 74
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 4 3 1 0 0 0 0 0 0 0 0 0 0
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 2 2 0 0 0 0 0 0 0 0 0 0 0
AGG 1 0 0 1 0 0 0 0 0 0 0 0 0
AGC 2 1 0 1 0 0 0 0 0 0 0 0 0
ACA 3 3 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 5 4 1 0 0 0 0 0 0 0 0 0 0
TGT 3 2 1 0 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 10 10 0 0 0 0 0 0 0 0 0 0 0
TCA 2 2 0 0 0 0 0 0 0 0 0 0 0
TCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 0 1 0 0 0 0 0 0 0 0 0 0
GTT 1 0 1 0 0 0 0 0 0 0 0 0 0
GGT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCA 3 1 2 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 5 4 1 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 7 3 3 0 0 0 0 1 0 0 0 0 0
CTG 8 6 2 0 0 0 0 0 0 0 0 0 0
CTC 1 1 0 0 0 0 0 0 0 0 0 0 0
CGG 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 2 1 1 0 0 0 0 0 0 0 0 0 0
CCT 3 3 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 1 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 0
4 AAC + 3 ACA + 5 CAA + 1 GTT + 5 TTG + 3 TGT = 21
2 ATG + 0 TGA + 1 GAT + 1 CAT + 0 ATC + 2 TCA = 6
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 0 GAG + 3 CCT + 1 CTC + 0 TCC = 5
2 AGC + 3 GCA + 7 CAG + 2 GCT + 8 CTG + 10 TGC = 32
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 1 TCG = 1
1 ACC + 2 CCA + 0 CAC + 2 GGT + 0 GTG + 1 TGG = 6
0 GGC + 0 GCG + 1 CGG + 0 GCC + 0 CCG + 0 CGC = 1
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7291054|gb|AE003447.1|AE003447 Drosophila melanogaster genomic scaffold 142000013386054 section 31 of 35, complete sequence
Position Repeat Coverage Repeat
1168 AAC * 14 39/42 AAC AAC AGC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AGG
4723 CAT * 18 49/54 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CGT CAT TCT CCG
13167 TTA * 10 27/30 TTA TTA TTG GTA TTA TTA TTA TTA TTA TTT
19349 TTG * 7 19/21 TTG CTG CTG TTG TTG TTG TTG
24538 TCC * 7 19/21 TCC TTC TCC TCC TCC TCC TGC
24702 CTG * 7 19/21 CTG CTG CTG ATG TTG CTG CTG
24730 TGC * 7 19/21 TGC TGC TGC TTC TGA TGC TGC
24808 TGC * 7 20/21 TGC TGC TGC TGC TGA TGC TGC
65775 ATG * 8 24/24 ATG ATG ATG ATG ATG ATG ATG ATG
70537 TTG * 9 25/27 TTG CTT TTG TTG TTG TTG TTG TTG TTG
76557 CTG * 12 33/36 CTG CTG CTG CTG CTG CTA CTG CTG CTG CTG CCT CTG
77079 GCA * 7 19/21 GCA GCA GCA ACA GCA GCA ACA
77133 CAG * 8 22/24 CAG CAA CAT CAG CAG CAG CAG CAG
93892 GCA * 10 28/30 GCA GCA GCA GCA GCA ACA GCA ACA GCA GCA
133250 GCA * 7 19/21 GCA GCA ACA GCA GCA GCA ACA
133812 ATG * 7 19/21 ATG ATG ATG ATG GTG AGG ATG
133926 CAG * 12 33/36 CAG CAG CAG CAG AAG CAG CAG CAG CAG CAA CAT CAG
134329 CAG * 8 22/24 CAG CAG CAG CAG CAA CTG CAG CAG
150286 AGC * 7 19/21 AGC AGC AGC AGA AGG AGC AGC
150402 AGC * 10 27/30 AGC AGC AGC AAC AAC AGC AGC AGC AGC AAC
150563 CAG * 7 19/21 CAG CAG CAA CTG CAG CAG CAG
151481 CAA * 7 19/21 CAA CAA CAA CAA CAG CAA CAG
152297 GCA * 7 19/21 GCA GCA GCA GTT GCA GCA GCA
154730 TTA * 7 19/21 TTA TTA TTA TTA TTA TTT TTT
191287 AGA * 10 27/30 AGA AGA AGA AGA AGA AGA AGA ACA ACA ACA
205720 CAT * 7 19/21 CAT CAT CGT CAT CAA CAT CAT
205744 CAT * 11 30/33 CAT CAT CAT TAT CAT CAT CAT CAT CAT CAT CCC
216707 TTG * 8 23/24 TTG TGG TTG TTG TTG TTG TTG TTG
269816 CTA * 10 28/30 CTA CTA CTA CTA CTA CTA CAA CTA CTG CTA
274392 GAG * 10 27/30 GAG GAG GAG GAG GAG GAA GAG GAG GAC GAT
275078 GAG * 7 19/21 GAG GAG GTG GAT GAG GAG GAG
275177 CAG * 7 19/21 CAG CAG CAG CAG CAT CAC CAG
296423 CTG * 7 19/21 CTG CTG CTA CTG CTA CTG CTG
-----------------------------------------------------------------------------------------
Total sequence length......................... 304060
Total number of repeats detected.............. 33
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 0 0 1 0 0 0 0 0 0 0 0 0
ATG 2 2 0 0 0 0 0 0 0 0 0 0 0
AGA 1 0 1 0 0 0 0 0 0 0 0 0 0
AGC 2 1 1 0 0 0 0 0 0 0 0 0 0
TTA 2 1 1 0 0 0 0 0 0 0 0 0 0
TTG 3 3 0 0 0 0 0 0 0 0 0 0 0
TGC 2 2 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 2 1 1 0 0 0 0 0 0 0 0 0 0
GCA 4 3 1 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 3 1 1 0 1 0 0 0 0 0 0 0 0
CAG 5 4 1 0 0 0 0 0 0 0 0 0 0
CTA 1 0 1 0 0 0 0 0 0 0 0 0 0
CTG 3 2 1 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 0 ATA + 0 TAA + 0 ATT + 2 TTA + 0 TAT = 2
0 AAG + 1 AGA + 0 GAA + 0 CTT + 0 TTC + 0 TCT = 1
1 AAC + 0 ACA + 1 CAA + 0 GTT + 3 TTG + 0 TGT = 5
2 ATG + 0 TGA + 0 GAT + 3 CAT + 0 ATC + 0 TCA = 5
0 AGT + 0 GTA + 0 TAG + 0 ACT + 1 CTA + 0 TAC = 1
0 AGG + 0 GGA + 2 GAG + 0 CCT + 0 CTC + 1 TCC = 3
2 AGC + 4 GCA + 5 CAG + 0 GCT + 3 CTG + 2 TGC = 16
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7290992|gb|AE003446.1|AE003446 Drosophila melanogaster genomic scaffold 142000013386054 section 30 of 35, complete sequence
Position Repeat Coverage Repeat
21394 CAT * 8 22/24 CAT CAT CAT CAT CAT AAT CAT CAC
21540 GCA * 7 19/21 GCA GCA GCA GCA ACA GCA GCC
24247 TGC * 7 19/21 TGC TGT TGC TGC TGT TGC TGC
24322 TGC * 7 19/21 TGC TGT TGC TGT TGC TGC TGC
24367 TGC * 7 19/21 TGC TGT TGC TGC TGC TGC TCC
24443 TGC * 10 27/30 TGC TGT TGC TGT TGC TGC TGC TGC TGC TCC
25690 TGT * 7 19/21 TGT TGT TGT TGA TGT TGA TGT
25717 TGC * 7 19/21 TGC TGT TGA TGC TGC TGC TGC
25758 CTG * 15 41/45 CTG TTG CTG CTG CTG CTG CTG CTG CTG CTG TTG CTG CTG TTG TTG
25813 TGC * 9 25/27 TGC TGC TGA TGC TGC TGC TGC TGC TGG
26087 CTG * 8 22/24 CTG CTG CTG CTG CTG ATG TTG CTG
32961 TTA * 7 19/21 TTA TTT TTT TTA TTA TTA TTA
56464 GAA * 8 22/24 GAA GAA GAT GAA GAA GAT GAA GAA
63039 TGC * 8 22/24 TGC TGA TGT TGC TGC TGC TGC TGC
66808 GTT * 8 23/24 GTT GTT GTT GTT GTT GTT GGT GTT
78223 ATA * 7 19/21 ATA ATA ATA ATA ACA AAA ATA
84806 TAT * 10 28/30 TAT TAT TAT TAT TAT TAT TAT TAC GAT TAT
90584 GAG * 8 22/24 GAG GAT GAG GAG GAA GAG GAG GAG
97822 CAC * 7 19/21 CAC CAC CAC CGC CTC CAC CAC
99987 ACA * 10 27/30 ACA ACA ACA ACA ACA ACA ACA GCA ATA ATA
101716 TGT * 7 19/21 TGT TGT TGT TGT TGT TGC TGC
102798 TGT * 7 19/21 TGT TCT TGT TGT TGT TGT TGG
114414 GTG * 7 20/21 GTG CTG GTG GTG GTG GTG GTG
114760 GCA * 11 32/33 GCA ACA GCA GCA GCA GCA GCA GCA GCA GCA GCA
115046 CAG * 10 28/30 CAG CAG CAG CAG CAG CAG CAG CAG CCG CAC
133675 AGC * 13 36/39 AGC AGC AGA AGT AGC AGC AGC AGC AGC AGC AGC AGC AGG
135772 GCA * 9 25/27 GCA ACA GCA ACA GCA GCA GCA GCA GCA
135857 CAG * 9 25/27 CAG CAG CAG CAG CAG CAG AAA CAG CAG
135886 GCA * 7 19/21 GCA GCA TCA ACA GCA GCA GCA
136154 CAG * 11 31/33 CAG CAG CAG CAG CAG CAA CAG CAG CAG CAA CAG
136240 GCA * 7 19/21 GCA GCA GCA GCA ACA GCA ACA
141478 ATT * 8 23/24 ATT ATT ATT ATT ATT ATT ATT GTT
143632 TAT * 11 30/33 TAT TAT TAT GAT TAT TAT TAT AAT TAT GAT TAT
153557 CAA * 10 28/30 CAA CAA CAA CAA CAA CAA CAA CAA TTA CAA
168375 TAT * 7 19/21 TAT TAT TAT TAT TAT TAT ATT
176034 TTA * 7 19/21 TTA TTT TTA TTA TTA TTA TTT
182785 GCT * 7 19/21 GCT GCT GCT GTT GCT GCT GGT
183651 AGC * 10 27/30 AGC AGC AGC AGC CGC AGC AGC AGC AGG ATC
190972 GCG * 7 19/21 GCG TCG GCG GCG GCG GCT GCG
193707 ATC * 9 25/27 ATC ATC ATC ATC ATC ATC ATC ATC AGA
214340 TGC * 10 27/30 TGC TGC TAC TGC TAC TGC TGC TGC TGC TGT
217569 TAT * 7 20/21 TAT TAT TAT TAT TAT TAT TAA
227768 GCA * 10 27/30 GCA GCA GGA GCA GTA GCA GCA GCA GCA GGA
230374 CAG * 7 19/21 CAG CAG GAG CAG TAG CAG CAG
236265 CTG * 7 19/21 CTG CTG TTG TTG CTG CTG CTG
238489 CTG * 7 19/21 CTG CTG TTG TTG CTG CTG CTG
238536 GCT * 7 19/21 GCT GCT GCT GTT GTT GCT GCT
238574 TGT * 7 19/21 TGT TGT TGC TGT TGC TGT TGT
253904 CCA * 8 23/24 CCA CCA CCA CCA CCA CCA CCA CCC
261745 GCA * 7 19/21 GCA GCA GCA GCA GCA GCA CCC
266261 TGC * 8 23/24 TGC TGC TGC TGC TGC TGC TGC TGT
269686 GCC * 7 19/21 GCC ACC GCC GCC GCC GCC ACC
270296 CAG * 10 27/30 CAG CAG CAG CAA CAG CAG CAG CAG CAA CAA
275555 TGT * 7 19/21 TGT TGG TGG TGT TGT TGT TGT
275840 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC TGC CAC
276255 GTT * 10 28/30 GTT ATT GTT CTT GTT GTT GTT GTT GTT GTT
284397 TTA * 7 21/21 TTA TTA TTA TTA TTA TTA TTA
294684 TGA * 8 22/24 TGA TGA TGA TGA TGG TGC TGA TGA
295448 CTG * 10 28/30 CTG TTG TTG CTG CTG CTG CTG CTG CTG CTG
295637 CTG * 8 23/24 CTG CTG CTG TTG CTG CTG CTG CTG
295913 CTG * 10 28/30 CTG TTG CTG CTG CTG CTG CTG CTG CTG CAG
296013 TGC * 7 19/21 TGC TGC TGT TGC TGG TGC TGC
296159 CTG * 8 22/24 CTG CTG TTG CTG TTG CTG CTG CTG
299989 AAC * 8 23/24 AAC AAC AAC AAC AAC AAC AAC AGC
300223 CCG * 8 22/24 CCG CCG CCG CCG CTG CTG CCG CCG
-----------------------------------------------------------------------------------------
Total sequence length......................... 303104
Total number of repeats detected.............. 65
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 1 1 0 0 0 0 0 0 0 0 0 0 0
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 0 1 1 0 0 0 0 0 0 0 0 0
ACA 1 0 1 0 0 0 0 0 0 0 0 0 0
TAT 4 2 2 0 0 0 0 0 0 0 0 0 0
TTA 3 3 0 0 0 0 0 0 0 0 0 0 0
TGA 1 1 0 0 0 0 0 0 0 0 0 0 0
TGT 5 5 0 0 0 0 0 0 0 0 0 0 0
TGC 11 9 2 0 0 0 0 0 0 0 0 0 0
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 2 1 1 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 7 5 2 0 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCG 1 1 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 1 0 1 0 0 0 0 0 0 0 0 0 0
CAT 1 1 0 0 0 0 0 0 0 0 0 0 0
CAG 5 2 3 0 0 0 0 0 0 0 0 0 0
CAC 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 8 5 2 1 0 0 0 0 0 0 0 0 0
CCA 1 1 0 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
0 AAT + 1 ATA + 0 TAA + 1 ATT + 3 TTA + 4 TAT = 9
0 AAG + 0 AGA + 1 GAA + 0 CTT + 0 TTC + 0 TCT = 1
1 AAC + 1 ACA + 1 CAA + 2 GTT + 0 TTG + 5 TGT = 10
0 ATG + 1 TGA + 0 GAT + 1 CAT + 1 ATC + 0 TCA = 3
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 0 TCC = 1
2 AGC + 7 GCA + 5 CAG + 2 GCT + 8 CTG + 11 TGC = 35
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 1 CCA + 1 CAC + 0 GGT + 1 GTG + 0 TGG = 3
0 GGC + 1 GCG + 0 CGG + 1 GCC + 1 CCG + 0 CGC = 3
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7290970|gb|AE003445.1|AE003445 Drosophila melanogaster genomic scaffold 142000013386054 section 29 of 35, complete sequence
Position Repeat Coverage Repeat
24223 GCT * 11 31/33 GCT GCT GCT GCT GCT GCT GAT GCT GCT GCT GCC
40736 TAA * 8 22/24 TAA TAA TAA TAA TAA TAA TAA AAG
41072 CTG * 8 22/24 CTG CTG TTG CTG CTG CTG CTG TTG
41097 TGC * 8 23/24 TGC TGC TGC TGC TGC TGC TGT TGC
41174 CGG * 8 23/24 CGG CGG CGG CGG CGG TGG CGG CGG
54682 AGC * 12 33/36 AGC AGC CGC AGC AGC AGC AGC AGC AGC AGC AGC CAC
59253 TTA * 7 20/21 TTA ATA TTA TTA TTA TTA TTA
75899 CAG * 10 28/30 CAG CAG CAG CAG CAG CAG CAG CAG CAA CCG
85394 TGC * 7 20/21 TGC TGC TGC TGC TGC TGT TGC
94296 TTG * 10 27/30 TTG TTG TTG TTG TTG TTG TAG CTG TTG TTA
102257 TGC * 8 23/24 TGC TGC TGC TGC TGC TGC TGC TGT
102473 AGC * 8 22/24 AGC AAC AAC AGC AGC AGC AGC AGC
102508 CAG * 8 22/24 CAG CAG CAG CAG CAA CAA CAG CAG
103245 GTC * 11 31/33 GTC GTC GTC GTC GTC GTC GTC GTC GTC GTC GGT
106899 ATA * 7 19/21 ATA ATA ATA ATA ATA AAA AAA
107331 AAT * 8 22/24 AAT AAT AAT AAT AAT AAT AAT TTT
111598 CAT * 7 19/21 CAT CAT CGT CAT CGT CAT CAT
111658 AAC * 10 27/30 AAC AAC AAG TAC AAC AAC AAC AAC AAC AGC
112432 GTC * 7 19/21 GTC GTC GTC GTT GTC GTT GTC
133418 TTG * 10 27/30 TTG TTG TTG TTG TTG TTC TTG CTG TTG CTG
139130 ATC * 8 22/24 ATC ATC ATC ATC ATC ACC ATC ACC
141313 ATT * 7 19/21 ATT ATA ATT ATT ATT ATT GTT
145872 CAA * 8 22/24 CAA CAA CAA CAA GAA CAA CAA CAC
151323 ATG * 7 19/21 ATG ATG ATG ATG ATG ATA GTG
154244 GTG * 12 33/36 GTG GTG GTG GTG GTG GTG GTG GTG GTG GCA GCG GTG
155789 ATA * 8 22/24 ATA ATA ATA AAA ATA ATA ATT ATA
155855 TGT * 10 28/30 TGT TCT TGT TGT TGT TGA TGT TGT TGT TGT
156333 TCA * 8 22/24 TCA TCA TCA TCT TCA TCA TTA TCA
172356 CCT * 8 23/24 CCT CCT CCT TCT CCT CCT CCT CCT
174250 ACA * 7 19/21 ACA ACG ACA ACA ACA ACA GCA
185240 GAT * 11 30/33 GAT GAT GAT GAT GAT GAT GAT GAT GAC GAG GAC
187265 TCT * 7 19/21 TCT TCT TCT TCT TCC TCA TCT
187361 TTG * 7 20/21 TTG TTG TTG TTG TTG TAG TTG
201644 GTT * 7 19/21 GTT GTT GTT GCT GTT GCT GTT
213431 CGG * 7 20/21 CGG CGG CGG CGG CGG TGG CGG
217787 GAT * 7 19/21 GAT GAT GAT GCT GCT GAT GAT
222017 TTG * 7 19/21 TTG TTG TTG TTG TTG TTG ATA
241498 ATG * 9 25/27 ATG ATG ATG ATG ATG ATG ATG ATG CTT
251729 CAT * 14 39/42 CAT CAT CAT CAT CGT CAT CAT CAT CAT CAT CAT CAT CAT TGT
252654 ATG * 8 24/24 ATG ATG ATG ATG ATG ATG ATG ATG
282323 ACA * 11 30/33 ACA ACA ACA GCA GCA ACA ACA ACA ACA ACA ACC
289098 TGC * 7 19/21 TGC TGC TGC TGC TGC TGA CGC
291545 ATA * 7 20/21 ATA ATA ATA ATA ATA ATA AAA
292689 TCC * 15 41/45 TCC TCC TCC TCC GCC TCC TCC TAC TCC TCC TCC TCC TCC ACC ACC
296151 ACA * 8 22/24 ACA GCA ACA ACA ACA ACA ACA GCA
296193 GCA * 7 19/21 GCA GCA GCA GCA GCA ACA ACA
296238 GCA * 7 19/21 GCA GCA GCA GCA ACA TCA GCA
296556 GCA * 13 36/39 GCA GCA GCA GCA ACA ACA GCA GCA GCA GCA GCA GCA ACA
296716 CAG * 11 30/33 CAG CAG TTG CAG CAG CAG CAG CAG CAG CAG CAA
297244 TAT * 7 20/21 TAT TAT TAC TAT TAT TAT TAT
301869 GGT * 7 19/21 GGT GGT GGT GCT GGT GGC GGT
308667 TAC * 7 20/21 TAC TAC TAC TAC TAC TAC TAT
-----------------------------------------------------------------------------------------
Total sequence length......................... 313965
Total number of repeats detected.............. 52
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 1 0 1 0 0 0 0 0 0 0 0 0 0
ATA 3 3 0 0 0 0 0 0 0 0 0 0 0
ATT 1 1 0 0 0 0 0 0 0 0 0 0 0
ATG 3 3 0 0 0 0 0 0 0 0 0 0 0
ATC 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 1 1 0 0 0 0 0 0 0 0 0 0
ACA 3 2 1 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAT 1 1 0 0 0 0 0 0 0 0 0 0 0
TAC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 4 2 2 0 0 0 0 0 0 0 0 0 0
TGT 1 0 1 0 0 0 0 0 0 0 0 0 0
TGC 4 4 0 0 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
TCT 1 1 0 0 0 0 0 0 0 0 0 0 0
TCC 1 0 0 1 0 0 0 0 0 0 0 0 0
GAT 2 1 1 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 0 1 0 0 0 0 0 0 0 0 0 0
GTC 2 1 1 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 3 2 0 1 0 0 0 0 0 0 0 0 0
GCT 1 0 1 0 0 0 0 0 0 0 0 0 0
CAA 1 1 0 0 0 0 0 0 0 0 0 0 0
CAT 2 1 0 1 0 0 0 0 0 0 0 0 0
CAG 3 1 2 0 0 0 0 0 0 0 0 0 0
CTG 1 1 0 0 0 0 0 0 0 0 0 0 0
CGG 2 2 0 0 0 0 0 0 0 0 0 0 0
CCT 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 3 ATA + 1 TAA + 1 ATT + 1 TTA + 1 TAT = 8
0 AAG + 0 AGA + 0 GAA + 0 CTT + 0 TTC + 1 TCT = 1
1 AAC + 3 ACA + 1 CAA + 1 GTT + 4 TTG + 1 TGT = 11
3 ATG + 0 TGA + 2 GAT + 2 CAT + 1 ATC + 1 TCA = 9
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 1 TAC = 1
0 AGG + 0 GGA + 0 GAG + 1 CCT + 0 CTC + 1 TCC = 2
2 AGC + 3 GCA + 3 CAG + 1 GCT + 1 CTG + 4 TGC = 14
0 ACG + 0 CGA + 0 GAC + 0 CGT + 2 GTC + 0 TCG = 2
0 ACC + 0 CCA + 0 CAC + 1 GGT + 1 GTG + 0 TGG = 2
0 GGC + 0 GCG + 2 CGG + 0 GCC + 0 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7290927|gb|AE003444.1|AE003444 Drosophila melanogaster genomic scaffold 142000013386054 section 28 of 35, complete sequence
Position Repeat Coverage Repeat
13588 GCA * 8 22/24 GCA GCA GCA GCA GCA ACA GCT GCA
16225 CAA * 7 19/21 CAA CAA CAA CAA CAG CAA CCA
33430 CTG * 8 22/24 CTG TTG CTG TTG CTG CTG CTG CTG
33521 TGC * 9 25/27 TGC TGC TGC TGT TGC TGT TGC TGC TGC
33551 TGC * 13 37/39 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGT TGC TGC TTC
36583 GAC * 8 23/24 GAC GAC GAT GAC GAC GAC GAC GAC
36632 TGC * 7 19/21 TGC TGC TGG TGC TGC TGT TGC
39479 CTG * 10 29/30 CTG CTG CGG CTG CTG CTG CTG CTG CTG CTG
39662 CCT * 17 46/51 CCT CCT CCT CCT CCA TCT CCT CCT CCT CCT CCT TCT CCT TCT CCT CCT TCT
94725 AAT * 11 30/33 AAT AAT AAT ACA AAT AAT AAT AAT AAT AAT AAC
96668 GCG * 17 46/51 GCG GCG GCG GCG GCG GCG GCG GCG GCG GCG GCG GCG GCG GCG GAA TAG GAG
96727 GGC * 8 23/24 GGC GGC GGC GGC GGC GGC GGA GGC
101117 ATA * 10 27/30 ATA ACA ATA ATA ATA ATA ATA ATA ATA AAT
110918 CTC * 7 19/21 CTC CTC CTC CTC CTC CTC CGA
112477 GTG * 8 22/24 GTG GTG GTG GTG GTG GTG GTG GAT
113662 TGA * 13 36/39 TGA TGA TGA TGA TGA TGA TGA TGA TGT TGA TGA TGA GGG
132427 TCA * 8 22/24 TCA TCA TCA TCC TCT TCA TCA TCA
133296 CAA * 14 38/42 CAA CAA CAA CAA CAG CAA CAA CAA CAA CAG CAG CAA CAA CAG
134651 ACA * 7 19/21 ACA ACA GCA AAA ACA ACA ACA
138626 AAC * 10 28/30 AAC CAC AAC AAC AAG AAC AAC AAC AAC AAC
139650 CTC * 10 28/30 CTC CTC CTC CCC CTC CTT CTC CTC CTC CTC
147721 AGC * 9 25/27 AGC ACG AGC AGC AGC AGC AGC AGC AGC
147757 AAC * 11 30/33 AAC AAC AAC AAC AAC AAC AAC AAT AAC ATC ATC
150967 GCA * 11 30/33 GCA GCA ACA GCA GCA GCA GCA GCG GCA GCA ACA
188255 TCC * 7 19/21 TCC TGC TCC TCC TCT TCC TCC
190165 GGA * 7 19/21 GGA CGA TGA GGA GGA GGA GGA
192588 GGA * 9 25/27 GGA GGA GGA GGA GGA GCA GGA GGA GCA
206929 TAA * 7 19/21 TAA TCA GAA TAA TAA TAA TAA
209726 GCA * 7 20/21 GCA GCA GCA GCA GCA GCA GGA
215332 TGG * 8 22/24 TGG TGG TGG TGG TGT TGG TGG TGC
217179 CGC * 8 22/24 CGC CAC CGC CGC CGC CGC CGC CAC
217373 CCG * 7 19/21 CCG CCG CCG CCG CCG CTG CTG
217798 CTG * 7 19/21 CTG CTG CTG CTG CTG CAA CTG
229637 TAG * 7 19/21 TAG TAT TAG TAG TAG TAG TAA
235314 TGC * 8 22/24 TGC TAC TGC TGC TGC TAC TGC TGC
239319 ATG * 7 20/21 ATG ATG ATG ATG ATG ATG ATA
245851 CTG * 8 22/24 CTG CTG CTG CTG CTG CTG CTG CCT
260300 AAG * 7 19/21 AAG AAG AAG AAG AAG AAG AGT
260930 GCA * 8 22/24 GCA GCA GCA GCA GCA GCA ACA ACA
275797 TGC * 8 22/24 TGC TGC TGC TGC TGC TGC TGG AGC
281973 CAG * 8 22/24 CAG CAG CAG CAG CAG CAA CAG CGG
287694 GAT * 9 25/27 GAT GAT GAT GAT GTT GGT GAT GAT GAT
287886 GAA * 11 30/33 GAA GAA GAA GAA GAA GAA GAA GAA GGC GAA CAA
289496 CAA * 7 19/21 CAA CAA AAA CAA CAA GAA CAA
297355 GGA * 7 19/21 GGA GGA GGA GGA GGA GGA ATA
-----------------------------------------------------------------------------------------
Total sequence length......................... 300710
Total number of repeats detected.............. 45
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 0 1 0 0 0 0 0 0 0 0 0 0
AAG 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 2 0 2 0 0 0 0 0 0 0 0 0 0
ATA 1 0 1 0 0 0 0 0 0 0 0 0 0
ATG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 1 1 0 0 0 0 0 0 0 0 0 0 0
TAG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGA 1 0 0 1 0 0 0 0 0 0 0 0 0
TGG 1 1 0 0 0 0 0 0 0 0 0 0 0
TGC 5 4 0 1 0 0 0 0 0 0 0 0 0
TCA 1 1 0 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAA 1 0 1 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 3 3 0 0 0 0 0 0 0 0 0 0 0
GGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 4 3 1 0 0 0 0 0 0 0 0 0 0
GCG 1 0 0 0 1 0 0 0 0 0 0 0 0
CAA 3 2 0 1 0 0 0 0 0 0 0 0 0
CAG 1 1 0 0 0 0 0 0 0 0 0 0 0
CTG 4 3 1 0 0 0 0 0 0 0 0 0 0
CTC 2 1 1 0 0 0 0 0 0 0 0 0 0
CGC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCT 1 0 0 0 1 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 1 ATA + 1 TAA + 0 ATT + 0 TTA + 0 TAT = 3
1 AAG + 0 AGA + 1 GAA + 0 CTT + 0 TTC + 0 TCT = 2
2 AAC + 1 ACA + 3 CAA + 0 GTT + 0 TTG + 0 TGT = 6
1 ATG + 1 TGA + 1 GAT + 0 CAT + 0 ATC + 1 TCA = 4
0 AGT + 0 GTA + 1 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 3 GGA + 0 GAG + 1 CCT + 2 CTC + 1 TCC = 7
1 AGC + 4 GCA + 1 CAG + 0 GCT + 4 CTG + 5 TGC = 15
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 0 CAC + 0 GGT + 1 GTG + 1 TGG = 2
1 GGC + 1 GCG + 0 CGG + 0 GCC + 1 CCG + 1 CGC = 4
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7290880|gb|AE003443.1|AE003443 Drosophila melanogaster genomic scaffold 142000013386054 section 27 of 35, complete sequence
Position Repeat Coverage Repeat
15905 TGG * 14 38/42 TGG TTG TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TCG TAT
21061 GAG * 7 20/21 GAG GAG GAG GAG GAG GTG GAG
28525 GAC * 8 22/24 GAC GAT GAC GAC GAC GAC GAC GAG
30325 GGT * 8 22/24 GGT GGT GGT GGT GGT GCT GGT GGC
57562 TGC * 8 22/24 TGC TGC TGC TGT TGC TGT TGC TGC
61360 TGT * 10 28/30 TGT TGT TGT TGT TGT TGT TGT TGT TGG TGG
61575 TGC * 7 19/21 TGC TGG TTC TGC TGC TGC TGC
64534 CTG * 12 33/36 CTG CTG CTG CTG CTG CTG CTG TTG CAG CTG CTG CTC
64983 AAC * 7 19/21 AAC AAC AAT CAC AAC AAC AAC
66066 GCT * 8 24/24 GCT GCT GCT GCT GCT GCT GCT GCT
67001 CAG * 7 19/21 CAG CAT CAC CAG CAG CAG CAG
67024 GCA * 7 19/21 GCA GCG GCA GCG GCA GCA GCA
74057 TTC * 14 38/42 TTC TTC TTC TTC TTC TTC GTC GTC TTC TTC TTC TCC TTC ATC
74428 CAA * 8 22/24 CAA CAG CAA CAA CAA CAA CAA TAA
77387 TTA * 8 22/24 TTA CTA TTA TTA TTA TTA TTA TTT
80491 GCA * 8 22/24 GCA GCA GCA GCG GCA GCA GCA GAA
81663 TTG * 8 22/24 TTG TTG TTG TTG TTG TTT TTT TTG
91947 GTT * 7 19/21 GTT GTT GTT GTT GTT GTT TTC
96630 CAG * 10 28/30 CAG CAG CAG CAG CAA CAG CAG CAG CAG CCG
97588 CAG * 11 30/33 CAG CAA CAG CAA CAG CAG CAG CAG CAG CAT CAG
97669 CAG * 7 20/21 CAG CAG CAG CAG CAG CAA CAG
99230 TGA * 11 30/33 TGA TGA CCA TGA TGA TGA TGA TGA TGA TGA TGG
103474 AGC * 7 20/21 AGC AGC AGC AGC AGC AGC AAC
108866 GCT * 7 19/21 GCT GTT GCT GCT GCT GCT TCT
110837 GCA * 8 22/24 GCA GCA GCA GCT GCA GCA GCA ACA
111822 CAC * 8 23/24 CAC CAC CAC CAA CAC CAC CAC CAC
111888 CAC * 8 23/24 CAC CAA CAC CAC CAC CAC CAC CAC
111986 AAC * 7 19/21 AAC AAC TAC AAC AAC AAC ACC
112010 CAA * 9 25/27 CAA AAA CAT CAA CAA CAA CAA CAA CAA
112304 GCA * 12 33/36 GCA TCA GCA GCA GCA GCA GCA GCA ACA ACA GCA GCA
112645 AGC * 7 19/21 AGC AGC AGC AAC AGC AAC AGC
113062 GCA * 12 33/36 GCA ACA GCA GCA GCA GCA GCA TCA GCA TCA GCA GCA
119246 GCA * 13 36/39 GCA GCA GCA GCA GCA GCA GCA GCA GAA AAA GCA GCA GCA
119406 TGC * 10 27/30 TGC TGC TGC TGC TGC TGC TGC TGC AGC ATC
119693 GCA * 10 27/30 GCA ACT GCA GCA GCA GCA GCA GCA GCA GAA
127481 AAT * 7 19/21 AAT AAC AAT ATT AAT AAT AAT
132080 ATG * 7 20/21 ATG ATG ATG ATG ATG ATG ATT
144705 ACA * 7 19/21 ACA ACA ACA GCA GCA ACA ACA
147913 TTG * 7 20/21 TTG TTG TTG CTG TTG TTG TTG
172376 TGC * 12 33/36 TGC TGC TGC TGC TGC TGC TGT TGC TGC TGG TGA TGC
185725 AGG * 7 19/21 AGG AGC AGG AGC AGG AGG AGG
195256 CAG * 7 19/21 CAG CAT CAG CAT CAG CAG CAG
223778 CCG * 7 20/21 CCG CCG CCG CCA CCG CCG CCG
243234 AAC * 11 31/33 AAC AAC AAC AAC AAC AAC AAC AAC AGC AAC AAA
243363 ATG * 7 19/21 ATG ATT ATG ATG CTG ATG ATG
249317 GAA * 8 22/24 GAA GAA GAA CAA GAA GAA GAA GGA
263616 TCA * 10 29/30 TCA TCA TCA TCA TCA TCA TCA TCA GCA TCA
280569 GAT * 8 22/24 GAT GAT GAT GAT GAT GAT GAT GGC
286352 GCA * 9 25/27 GCA GCA GCA GCC GCA ACA GCA GCA GCA
286382 GCA * 7 20/21 GCA GCA GCA GCA GCA GCA GCC
286617 GGC * 7 19/21 GGC GGC GGC GGT GGC GGC GGT
287318 CAG * 7 19/21 CAG CAA CAG CAG CAG CAG CAA
287342 CAG * 11 30/33 CAG CAG CAG CAG CAG CAG CAG CAG CAA CAA CAA
287384 GCA * 11 30/33 GCA GCA GCA GCG GCG GCA GCA GCA GCA GCG GCA
287470 GCA * 8 23/24 GCA GCA ACA GCA GCA GCA GCA GCA
289076 CAG * 8 22/24 CAG CAA CAA CAG CAG CAG CAG CAG
291792 TCC * 8 22/24 TCC TGC TCC TCC TCC TCC TCC TCG
296300 AAC * 7 19/21 AAC AAC AAC AAC AAC TAC TAC
296719 AAC * 7 19/21 AAC AAC AGC AGC AAC AAC AAC
-----------------------------------------------------------------------------------------
Total sequence length......................... 302357
Total number of repeats detected.............. 59
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 1 1 0 0 0 0 0 0 0 0 0 0 0
AAC 5 4 1 0 0 0 0 0 0 0 0 0 0
ATG 2 2 0 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 2 0 0 0 0 0 0 0 0 0 0 0
ACA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 1 1 0 0 0 0 0 0 0 0 0 0 0
TTG 2 2 0 0 0 0 0 0 0 0 0 0 0
TTC 1 0 0 1 0 0 0 0 0 0 0 0 0
TGA 1 0 1 0 0 0 0 0 0 0 0 0 0
TGT 1 0 1 0 0 0 0 0 0 0 0 0 0
TGG 1 0 0 1 0 0 0 0 0 0 0 0 0
TGC 4 2 2 0 0 0 0 0 0 0 0 0 0
TCA 1 0 1 0 0 0 0 0 0 0 0 0 0
TCC 1 1 0 0 0 0 0 0 0 0 0 0 0
GAA 1 1 0 0 0 0 0 0 0 0 0 0 0
GAT 1 1 0 0 0 0 0 0 0 0 0 0 0
GAG 1 1 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0 0
GGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 11 6 4 1 0 0 0 0 0 0 0 0 0
GCT 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 2 2 0 0 0 0 0 0 0 0 0 0 0
CAG 8 5 3 0 0 0 0 0 0 0 0 0 0
CAC 2 2 0 0 0 0 0 0 0 0 0 0 0
CTG 1 0 1 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
1 AAT + 0 ATA + 0 TAA + 0 ATT + 1 TTA + 0 TAT = 2
0 AAG + 0 AGA + 1 GAA + 0 CTT + 1 TTC + 0 TCT = 2
5 AAC + 1 ACA + 2 CAA + 1 GTT + 2 TTG + 1 TGT = 12
2 ATG + 1 TGA + 1 GAT + 0 CAT + 0 ATC + 1 TCA = 5
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
1 AGG + 0 GGA + 1 GAG + 0 CCT + 0 CTC + 1 TCC = 3
2 AGC + 11 GCA + 8 CAG + 2 GCT + 1 CTG + 4 TGC = 28
0 ACG + 0 CGA + 1 GAC + 0 CGT + 0 GTC + 0 TCG = 1
0 ACC + 0 CCA + 2 CAC + 1 GGT + 0 GTG + 1 TGG = 4
1 GGC + 0 GCG + 0 CGG + 0 GCC + 1 CCG + 0 CGC = 2
-----------------------------------------------------------------------------------------
Genomic sequence
gi|7290831|gb|AE003442.1|AE003442 Drosophila melanogaster genomic scaffold 142000013386054 section 26 of 35, complete sequence
Position Repeat Coverage Repeat
1580 ATC * 7 20/21 ATC ATC ATC ATG ATC ATC ATC
9970 ATG * 9 25/27 ATG ATG ATG ATG ATG GTG ATG AGG ATG
11391 TGT * 11 30/33 TGT TGT TGT TGT TGT TGT TGT TGT TGT TGG TCG
21362 CAA * 7 19/21 CAA TAA CAA TAA CAA CAA CAA
21989 TGC * 12 34/36 TGC TGC TGC TGT TGC TGC TGC TGC TGT TGC TGC TGC
33562 GCA * 8 22/24 GCA GCA GCA GCA GCA GCA ACA ACA
36286 ATT * 11 30/33 ATT ATT ATT ATT GCT ATT ATT ATT ATT ATT ATG
48242 CAG * 11 31/33 CAG CAG CAG CAG CAG CAG GAG CAG CAA CAG CAG
48489 ATT * 8 22/24 ATT ATT TTT TTT ATT ATT ATT ATT
63236 ATC * 7 19/21 ATC ATC AAC ATC ATC GTC ATC
107044 ACA * 8 22/24 ACA GCA ACA ACA ATA ACA ACA ACA
120143 TAT * 7 19/21 TAT TAT TAT TAT CAT TAT TTT
121777 TGT * 8 22/24 TGT TCT TGT TGT TTT TGT TGT TGT
155055 AAC * 10 27/30 AAC AAC AAC AAC AAC AAC AGC GAC AAC AAT
158312 TGC * 7 19/21 TGC TGC TGC TGC TGC TGA TGG
176747 GAC * 8 23/24 GAC TAC GAC GAC GAC GAC GAC GAC
194325 AGC * 17 46/51 AGC AGG AGC AGC AGC AGC AGC AGC AGC AGC AGC AGC AGC AGC AGG CGA AAC
203856 TGT * 7 19/21 TGT TGT TGC TGT TGC TGT TGT
210003 TCA * 7 21/21 TCA TCA TCA TCA TCA TCA TCA
213613 TTG * 8 22/24 TTG CTA TTG TTG TTG TTG TTG TTG
233043 TTA * 7 19/21 TTA ATA TTA TTA TTA TTA ATA
236502 CCG * 8 22/24 CCG CCG CCA CCG CCG CCG CCG CCA
237423 TGC * 8 22/24 TGC TGC TGC TGC AGC TGC TGC TGG
237453 TGC * 7 19/21 TGC TGC TGC TGC TGC TGT TGG
237512 CTG * 7 19/21 CTG CTG TTG CTG CTG CTG ATG
237554 CTG * 7 19/21 CTG CTG CAT CTG CTG CTG CTG
237813 TGC * 12 33/36 TGC TGC TGC TGT TGT TGC TGC TGC TGC TGC TGC TGT
237873 TGC * 10 28/30 TGC TGT TGC TGC TGC TGC TGC TGC TGC TGG
243190 ATA * 22 60/66 ATA ATC ATA ATA ATC ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATC ATA ATA TTG GTA ATA ATA
248102 TTG * 7 20/21 TTG TTG TTG TTG GTG TTG TTG
249142 GCC * 10 27/30 GCC GCC GCC GCC GCC GCC GCA GCC GCT GCT
265868 CAG * 11 30/33 CAG CAG CTG CAG CTG CAG CAG CAG CAG CAA CAG
266357 AGC * 7 19/21 AGC ACC AGC AGC ACC AGC AGC
279883 CAC * 11 31/33 CAC CAC CAC CAC CAC CAC CAC CGC CTC CAC CAC
281895 TGT * 8 23/24 TGT TGT TGT TGT TGT TGT TGT TTT
-----------------------------------------------------------------------------------------
Total sequence length......................... 306267
Total number of repeats detected.............. 35
-----------------------------------------------------------------------------------------------
Minimum Tri-Nucleotide repeat units........... 7
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAC 1 0 1 0 0 0 0 0 0 0 0 0 0
ATA 1 0 0 0 0 0 1 0 0 0 0 0 0
ATT 2 1 1 0 0 0 0