Di-Nucleotide Repeats in Genomic Sequences
Di-Nucleotide Repeats in
Drosophila melanogaster Chromosome-X Genomic Scaffolds
Genomic Sequence:..
gi|7289277|gb|AE002611.1|AE002611 Drosophila melanogaster genomic scaffold 142000013385548, complete sequence
Position Repeat Coverage Repeat
2138 AT * 16 29/32 AT AT AT AT AT AT AT AT GT AT AT TT AT AT AT GT
3586 GT * 13 25/26 GT GT GT GT GT GT GT GT GT GA GT GT GT
9890 AT * 12 22/24 AT AT AT AT AT AT AT AA AT AG AT AT
21811 TG * 13 24/26 TG TC TG TG TG TG TG TG TG TG TG TA TG
31388 GT * 12 22/24 GT GT GT GC GC GT GT GT GT GT GT GT
31538 GT * 16 29/32 GT GT TG GT GT GT GT GT GT GT GT GT GT GT GT GC
38521 AG * 10 18/20 AG AG AG AG AG AG AG AG GG CG
47182 CA * 12 22/24 CA CC CA CT CA CA CA CA CA CA CA CA
47211 AC * 10 18/20 AC TC AA AC AC AC AC AC AC AC
54610 CA * 18 33/36 CA TA CG CA CA CA CA CA CA CA CA CA CA CA CC CA CA CA
55927 AC * 16 30/32 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC TG
57178 TG * 13 25/26 TG TG TG TG TG TG TG TG TG TG TG AG TG
59606 GT * 11 21/22 GT GT GT GT GT GT GT GT GT GT GG
59855 GT * 12 22/24 GT GT GT GT GT GT GT GT CT GT GT GC
59879 TG * 21 38/42 TG TG AG TG TT TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG GA
61164 TA * 10 18/20 TA TA TA TA TA CA TA TA TA TG
64199 GT * 16 29/32 GT GT GT GT GT GT GT GT GT GT GT TA GT GT GC GT
65367 CA * 13 25/26 CA CA CA CA CA CA CA CA CA CA CA TA CA
66167 TG * 11 20/22 TG TG TG TA CG TG TG TG TG TG TG
74223 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG CT
75296 AT * 10 18/20 AT AT AT AT AT AT GT AT AT AG
94738 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG TA TT
96480 AT * 12 22/24 AT AT AT AT AC AT AC AT AT AT AT AT
97453 GT * 13 24/26 GT GT GT CT GT GT GT GT GT GT GT GT GC
99198 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GC GT GA GT
106695 TG * 23 42/46 TG TG AG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TT CT
109489 AC * 10 18/20 AC AC AT AC AC AC AC AC AC GC
110370 TG * 13 25/26 TG TG TG TG TG CG TG TG TG TG TG TG TG
114696 GT * 17 31/34 GT GT GT GT GT GT GT GT GT GT GT GT GT GC TT GT GC
120682 TG * 13 24/26 TG CA TG TG TG TG TG TG TG TG TG TG TG
120763 GT * 11 20/22 GT GT GT GT GT GT TT GT GT AT GT
126024 AC * 14 26/28 AC AC AC AC GC AC AC AC AC AC AC AC AC AG
126404 TG * 18 33/36 TG TG TG TA TG TT TG TG TG TG TG TG TG TG TG TG TG TT
130353 GT * 14 26/28 GT GT GC AT GT GT GT GT GT GT GT GT GT GT
140389 AC * 16 29/32 AC AC TA AC AC AC AC AC AC AC AC AC AC AC AC AT
148030 TG * 10 18/20 TG TA TC TG TG TG TG TG TG TG
148053 GT * 10 18/20 GT GT GT GG GT GT GT GG GT GT
148692 CA * 11 20/22 CA CA CA CA CA CA CA CA CA AG CA
151261 CA * 15 28/30 CA CA CC CA CA CA CA CA CA CA CA CA CA CA AA
151728 TC * 10 18/20 TC TC TC TC TC TC TC TC TG CC
155052 CA * 11 21/22 CA CA CA CA CA CA CA CA CA AA CA
155498 TA * 12 22/24 TA TA TA TA CA TA TA TA TT TA TA TA
167119 GT * 13 25/26 GT GT GT GT GT GT GT GT GT GT GT GT GC
176216 AT * 12 22/24 AT AT AT AT AT AT AT AT GT AT AT GT
189814 AT * 11 20/22 AT AT AT GT AT AT AT AT GT AT AT
198051 AT * 10 18/20 AT AT AT AC AT CT AT AT AT AT
198073 AT * 10 18/20 AT AT AT AT AT AC AT TT AT AT
199274 TA * 10 18/20 TA TG TA TA TA TA TT TA TA TA
201409 CT * 11 20/22 CT TA CT CT CT CT CT CT CT CT CT
201942 CA * 10 18/20 CA CG CA CG CA CA CA CA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 216949
Total number of repeats detected.............. 50
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 7 3 1 0 3 5 8 10 1 1 0 0
15 to 19 1 0 0 0 2 2 1 3 0 0 0 0
20 to 24 0 0 0 0 0 0 2 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 8 3 1 0 5 7 11 13 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
8 AT + 3 TA = 11
1 AG + 0 GA + 1 CT + 1 TC = 3
13 GT + 11 TG + 7 CA + 5 AC = 36
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7316095|gb|AE002620.1|AE002620 Drosophila melanogaster genomic scaffold 142000013386037, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295611|gb|AE003572.1|AE003572 Drosophila melanogaster genomic scaffold 142000013386037 section 5 of 5, complete sequence
Position Repeat Coverage Repeat
798 CA * 20 37/40 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CG TG
3408 AC * 14 26/28 AC AT AC AC AC AC AC AC AC AC AC AC AC AG
16228 AT * 28 51/56 AT GT AT AT AT AT AT AT AT AC AT AT AT AT AT AA AT AT AT AT AT AT AC AT AT AT AT GT
16970 TG * 10 18/20 TG TA TG TG TG TG TG TG TG TA
17106 TA * 10 18/20 TA GA TA TA TA TA TA CA TA TA
19544 GT * 10 19/20 GT CT GT GT GT GT GT GT GT GT
20678 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT GG GC
23273 TG * 16 29/32 TG TG TG GG TG TG GG TG TG TG TG TG TG TG TG CG
24822 TG * 12 22/24 TG TG TG TG TG TG TG TG TG CA TG TG
24924 TG * 15 27/30 TG TG TG TG TG TG TG CG TG TG TG TG TG TG CC
27844 AC * 18 33/36 AC AT CC AC AC AC AC AC AC AC AC AC AC AC AC AC AT AC
30699 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AC TT AC
30725 AC * 10 18/20 AC GC AC CC AC AC AC AC AC AC
32025 CA * 10 18/20 CA CA CA GA CT CA CA CA CA CA
49019 CA * 10 18/20 CA CA CA CA CA CA TG CA CA CA
55441 AT * 18 33/36 AT AT AT GT AT AT AT AT AT AT AA AT AT AT AT TT AT AT
58052 TG * 11 20/22 TG TG CG CG TG TG TG TG TG TG TG
58309 CA * 11 20/22 CA CG CA AA CA CA CA CA CA CA CA
74082 GA * 16 29/32 GA GT GA GA GG GA GA GA GA GA GA GA GA GA GA AA
74596 GA * 15 27/30 GA GA GA GC GA GA GA GA CA GA GA GA GA GA CA
74896 AG * 12 22/24 AG AG AG AG AG GG AG AG AG AT AG AG
-----------------------------------------------------------------------------------------
Total sequence length......................... 79498
Total number of repeats detected.............. 21
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 1 1 0 3 3 3 2 0 0 0 0
15 to 19 1 0 0 2 1 0 2 0 0 0 0 0
20 to 24 0 0 0 0 0 1 0 0 0 0 0 0
25 to 29 1 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 1 1 2 4 4 5 2 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 1 TA = 3
1 AG + 2 GA + 0 CT + 0 TC = 3
2 GT + 5 TG + 4 CA + 4 AC = 15
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295580|gb|AE003571.1|AE003571 Drosophila melanogaster genomic scaffold 142000013386037 section 4 of 5, complete sequence
Position Repeat Coverage Repeat
7455 AT * 12 22/24 AT AT AT AT AT AT AT TC AT AT AT AT
8581 TG * 10 19/20 TG TG TG TG TG TG TG TG TT TG
8635 TG * 11 20/22 TG TG CG TG TG TG TG TG TG GG TG
14071 AT * 11 20/22 AT AT AT AC AT AT AC AT AT AT AT
21396 GT * 13 24/26 GT GT GC GT GT GT GT GT GT GT GT GT AT
25361 AC * 10 18/20 AC AC AA GC AC AC AC AC AC AC
30347 TG * 10 18/20 TG TG TG TG TG TG TG TA TG TT
31321 AT * 18 34/36 AT AT AT AT AT AC AT AT AT AT TT AT AT AT AT AT AT AT
49481 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC GC AC GC
56863 AT * 11 20/22 AT TA AT AT AT AT AT AT AT AT AT
58861 AT * 13 24/26 AT AT AT AT AT AT AT AT GT AT AT AT AG
60185 GA * 11 20/22 GA GA GA GA GT GA GA GA AA GA GA
60557 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TC TC
63927 TA * 12 22/24 TA TA TA TA TA TA TA TA TA TA TC TT
70729 TG * 21 39/42 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG GG AA
71039 TG * 14 26/28 TG TG TG CG TG TG TG TG TG TG TG TG TC TG
74083 TG * 13 24/26 TG TG TG TG TG TG TG CG TG TG TT TG TG
74555 TG * 12 22/24 TG TG TC TG TG TG GG TG TG TG TG TG
81391 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AT AG
85119 TA * 15 27/30 TA TA TA TA TA TA TA AA TA TA TA AA TA TA TT
85482 CA * 19 35/38 CA CA CA CA CT CA CA CA CA CA CA CA CA CA CA CA CG CC CA
92338 TG * 11 20/22 TG CG TG TG TG TG TG TG TG TG GG
120731 TC * 10 18/20 TC TC CC TC TC CC TC TC TC TC
122071 TA * 10 18/20 TA AA TA TA TA TA TA TA TA CA
124055 GT * 28 51/56 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GC CT TT CT GC
132230 AT * 11 20/22 AT TT AT AT AT AT AT AT AT AT AA
140007 CT * 23 42/46 CT CT CT CT CT CT CT CT CT CT CA CT CT CT CT CT CT CT CC CT CA CT TT
154822 TA * 12 22/24 TA TA TA TA TG TA TA TA TA TA TA TT
164640 CA * 11 20/22 CA CA CA CA CA CA CA CG CA CG CA
164862 TA * 10 18/20 TA TT CA TA TA TA TA TA TA TA
169228 CA * 11 20/22 CA CT CG CA CA CA CA CA CA CA CA
173130 AC * 10 18/20 AC AC AC AT AC AC AC AC AC GC
176436 TA * 17 31/34 TA TA TA TA TA TA TA TA TA TG TA TA TA TA TA TG TG
176696 TC * 23 42/46 TC TC TC TC TC TC TC TC TC GC TC GC TC TC TC TC TC TC TC TT TC TC TG
177191 TA * 13 24/26 TA AA TA TA TA TG TA TA TA TA TA TA TA
184815 TG * 12 22/24 TG TG TG TG TC TG TG TG TG TG TG TA
186829 CA * 10 18/20 CA CA CA CA CA TA CA CA CA CT
209927 TC * 12 23/24 TC TC TC TC TC TC TC TC GC TC TC TC
209984 TC * 10 19/20 TC TC TC TC TC TC TC TC GC TC
230710 AT * 10 18/20 AT AT AT AT GT AT AT AT AT AC
231885 AT * 10 18/20 AT AT AT AA AT AT AC AT AT AT
234427 AC * 14 26/28 AC AA AC AC AC AC AC AC AC GC AC AC AC AC
234661 GT * 31 56/62 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GA GC GT GT GT GT CA GA GG
235856 AG * 14 26/28 AG AG AG AG AG AG AG AG AG AG AG AG AT GG
237195 GT * 16 29/32 GT GC TT GT GT GT GT GT GT GT GT GT GT GT GT GA
244483 CA * 12 22/24 CA CA CA CA CA CA AC CA CA CA CA CA
253577 GT * 11 20/22 GT GT GT GT GT GT GT GT GG GT GG
255977 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG CA
264138 CA * 11 21/22 CA CA CA CA CA CA CA CA CT CA CA
266407 CA * 12 22/24 CA CA CA CA CA CC CA CA CA CA CA CG
267654 CA * 12 23/24 CA CA CA CA CA CA CA CA CA CG CA CA
269174 TC * 26 47/52 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TG TC TG TC TC TA TA GC
288428 AC * 10 18/20 AC AC AC AC TC AC AG AC AC AC
290278 TA * 11 20/22 TA TC TA TA TA TA TA TA TA GA TA
294518 AG * 12 22/24 AG GC AG AG AG AG AG AG AG AG AG AG
296678 CT * 10 18/20 CT GT CT CT CT CT CT CT CT TT
296698 GT * 13 24/26 GT GT AT GT GT GT GT GT GT GT GT GG GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 302246
Total number of repeats detected.............. 57
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 7 6 2 1 6 7 10 3 3 1 0 0
15 to 19 1 2 0 0 0 1 0 1 0 0 0 0
20 to 24 0 0 0 0 0 0 1 0 1 1 0 0
25 to 29 0 0 0 0 0 0 0 1 1 0 0 0
30 to 34 0 0 0 0 0 0 0 1 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 8 8 2 1 6 8 11 6 5 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
8 AT + 8 TA = 16
2 AG + 1 GA + 2 CT + 5 TC = 10
6 GT + 11 TG + 8 CA + 6 AC = 31
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295563|gb|AE003570.1|AE003570 Drosophila melanogaster genomic scaffold 142000013386037 section 3 of 5, complete sequence
Position Repeat Coverage Repeat
1364 TG * 12 23/24 TG TG TG TG TG TG TG TG TG TG TG CG
3523 AT * 10 18/20 AT AT AT GC AT AT AT AT AT AT
3565 AT * 13 24/26 AT AT AT AT AT AT AT AT GT AT AT AC AT
5073 CT * 17 31/34 CT CT CT CT CT CT CT CT CT CC CT CT CT CT CT CA CA
5661 CA * 11 20/22 CA CA CT AA CA CA CA CA CA CA CA
31382 TG * 10 19/20 TG TG TG TG TG TG TG TG TG TT
38306 AT * 18 33/36 AT AT AT AT GT AT AT AT AT AT AT AT AT AC AT AT AC AT
46938 TG * 10 18/20 TG TG TG TG AG TA TG TG TG TG
56628 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CT CA CG CA
56694 AC * 13 24/26 AC AC AC AC AC CC AC AC AC GC AC AC AC
57537 CA * 22 41/44 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA GA GA CG CA
58082 TG * 12 23/24 TG AG TG TG TG TG TG TG TG TG TG TG
70397 CA * 10 18/20 CA CA CA CA CA CA CA CA CA GC
71824 TC * 20 36/40 TC TC TA TC TC TC TC TT TC TC TC TC TC TC TC TC TC TC TT TT
75041 CA * 13 24/26 CA CA CA CA CA CA CA CA CG CA CA CG CA
91252 CA * 11 20/22 CA CA CA CA CA CA CG CA CA CA AA
116751 AC * 10 18/20 AC AC AC AC AC AC AC AC AA AA
118059 GT * 13 24/26 GT GT GT GT GT GT GT GC GC GT GT GT GT
121018 AT * 11 20/22 AT AC AT AT AT AC AT AT AT AT AT
121072 AT * 23 42/46 AT AT AT AT AT AT AT AT AA AT AT AT AT AT AT AC AT AT AT AT AT AA AG
121850 AT * 10 18/20 AT AT AC AT AT AT CT AT AT AT
121872 AT * 10 18/20 AT AT AT AT AA AG AT AT AT AT
144506 AT * 13 24/26 AT AT AT AT AT AT AT AT AA AT AT AC AT
150508 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC AC AC GT
150550 AT * 10 18/20 AT AT AT AA AT AT AT AT AT AA
151754 CA * 10 18/20 CA CA CA CA CA CA CA CA CT TA
152388 TC * 21 38/42 TC TT GC TC TC TC TC TC TC TC TC TC TC TC TC TC TT TC TC TG TC
155777 TA * 10 18/20 TA TA TA GG TA TA TA TA TA TA
155802 AT * 10 19/20 AT AT AT AT AT AT AT AT AT AC
216206 CA * 18 33/36 CA AA CA CA CA CA CA CA CA CA CA CA CA CA CA TA CA CG
227457 TG * 14 26/28 TG TG TG TT TG TG TG TG TG TG TG TG TT TG
227586 GA * 12 22/24 GA GA GC GA GA AA GA GA GA GA GA GA
247051 TA * 12 22/24 TA TA TA TA TA CA TA TA TA TA TG TA
252739 TA * 10 18/20 TA TA TA TA TA TG TA TG TA TA
277839 AT * 10 18/20 AT AT AT AG AT AT AT AT AT AA
290955 AT * 10 18/20 AT AT AT AT AT AT AT AC GT AT
291241 CA * 16 29/32 CA GA CT CA CA CA CA CA CA CA CA CA CA CA CA AA
-----------------------------------------------------------------------------------------
Total sequence length......................... 299012
Total number of repeats detected.............. 37
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 10 3 0 1 3 6 5 1 0 0 0 0
15 to 19 1 0 0 0 0 2 0 0 0 1 0 0
20 to 24 1 0 0 0 0 1 0 0 2 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 12 3 0 1 3 9 5 1 2 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
12 AT + 3 TA = 15
0 AG + 1 GA + 1 CT + 2 TC = 4
1 GT + 5 TG + 9 CA + 3 AC = 18
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295529|gb|AE003569.1|AE003569 Drosophila melanogaster genomic scaffold 142000013386037 section 2 of 5, complete sequence
Position Repeat Coverage Repeat
1792 TG * 12 23/24 TG TG TG TG TG TG TG TG TG TG TG TA
1863 GT * 15 27/30 GT GT GT GT GT GT GT GT GT GT GT GA GT GC GA
5785 CA * 14 26/28 CA CA CA CA TA CA CA CA TA CA CA CA CA CA
18334 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AG AG
22885 AT * 11 20/22 AT AT AT AT AT AT AA AC AT AT AT
27171 AC * 10 18/20 AC AC AC AC AC TC AC AA AC AC
36179 TA * 11 20/22 TA TA TA TA CA TA TA TA TA TA TG
37481 TG * 10 18/20 TG TG TG TG TG TG TG TG TG CT
121190 TG * 17 31/34 TG TG TG TG TG TG TG TG TG TG TG TG TG TG GA TA TG
151234 AC * 10 18/20 AC GC AT AC AC AC AC AC AC AC
157498 AG * 16 29/32 AG AG AG AG AG AG AG AG TG AG AG AG AG AG GG CG
158887 AC * 11 20/22 AC GC AC AC AC AA AC AC AC AC AC
159841 CT * 10 18/20 CT CT CT CT CG CC CT CT CT CT
181903 TA * 11 21/22 TA TA TA TA TA TA TA TA TA TA TT
197713 TG * 31 57/62 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TT AG CT TA
199062 AG * 10 18/20 AG AG CG AC AG AG AG AG AG AG
203731 AG * 18 33/36 AG AG AG AG AG AG AG AC AG AG AG AG AG AA AG AG CG AG
204892 CA * 10 18/20 CA CA CA CG TA CA CA CA CA CA
205016 GT * 10 18/20 GT GT GT GT GG TT GT GT GT GT
212307 CA * 16 29/32 CA CA CA CA CA CA CA CA CA CA CA CA CA AC GA CA
212917 GT * 12 22/24 GT GT GC GT GT GT GT GT GT GC GT GT
214207 AC * 12 22/24 AC AC GC AC AC CC AC AC AC AC AC AC
217954 AT * 13 24/26 AT AC AT AT AT AT AT AT AT AT AT AC AT
217982 AT * 10 18/20 AT AT AT AC AT AT AT AT TT AT
231449 CT * 10 19/20 CT CT CT CT CT CT CT CT CT TT
236177 GA * 15 27/30 GA GA GA GA GA GA TA GA GA GA GA GA GA GG GG
260668 TG * 10 18/20 TG TG TG TG TG CG TG TG TG TA
261615 AC * 10 18/20 AC AC AC AC AC GC GC AC AC AC
267722 AC * 10 18/20 AC GC AC AC AC AC AC AC AC AT
269188 AC * 13 24/26 AC AC AC AC AC AC AC AC AC GC AC GC AC
271880 AC * 18 34/36 AC AC AC GT AC AC AC AC AC AC AC AC AC AC AC AC AC AC
274689 AT * 11 20/22 AT AT GT AT AT AT TT AT AT AT AT
287220 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GT GG GT GG
290304 AC * 10 18/20 AC AC GC AC GC AC AC AC AC AC
-----------------------------------------------------------------------------------------
Total sequence length......................... 292406
Total number of repeats detected.............. 34
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 2 1 0 8 2 3 3 0 2 0 0
15 to 19 0 0 2 1 1 1 1 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 1 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 2 3 1 9 3 5 4 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 2 TA = 7
3 AG + 1 GA + 2 CT + 0 TC = 6
4 GT + 5 TG + 3 CA + 9 AC = 21
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295493|gb|AE003568.1|AE003568 Drosophila melanogaster genomic scaffold 142000013386037 section 1 of 5, complete sequence
Position Repeat Coverage Repeat
7369 CA * 13 24/26 CA CT CA CA CA CA CA CA CA CA CA CA CC
7615 CA * 17 31/34 CA CA CA CA CA CA CA CA CA CG CA CA CG CA CA CA CC
18024 CA * 11 20/22 CA CA CA CA CA CA CA CA GG CA CA
25860 AC * 10 18/20 AC AC AC AC AC AC GC AC AC GC
27810 CA * 13 24/26 CA AA AA CA CA CA CA CA CA CA CA CA CA
33428 CA * 11 20/22 CA CA CA CA CA CA CA CA CT CG CA
36796 TG * 13 24/26 TG TG TG CG TG TG TG TG TG TG TG TG TA
37413 AC * 10 18/20 AC AC AC AC AC AC AG GC AC AC
40958 TG * 11 21/22 TG AG TG TG TG TG TG TG TG TG TG
41233 CA * 11 21/22 CA CA CT CA CA CA CA CA CA CA CA
45113 CA * 10 18/20 CA TA CA CA CA CA CA CA CC CA
71231 CA * 32 59/64 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CT TG TC CA
83749 CA * 11 20/22 CA CA CA CA CA CA CA CG CG CA CA
84810 AC * 13 24/26 AC AC AC AC AC AC AC AC AA AA AC AC AC
87212 GT * 15 27/30 GT GT GT GT GT GT GT GT GT GC GC GT GT GT AT
87398 TG * 17 31/34 TG TG TG TG TG TG TG TG TG TG TG TG TG TT TG CG GG
88753 TA * 12 22/24 TA TA TA TA TA TA TA TA TA TA TA CC
95734 AT * 10 19/20 AT AT AT AT AT AT AT AT AG AT
97721 CA * 15 28/30 CA GA CT CA CA CA CA CA CA CA CA CA CA CA CA
102707 GT * 10 18/20 GT GT GC AT GT GT GT GT GT GT
107033 CA * 12 22/24 CA GT CA CA CA CA CA CA CA CA CA CA
115692 AT * 16 30/32 AT AT AC AT AT AT AT AA AT AT AT AT AT AT AT AT
119505 TG * 12 23/24 TG TG TG TG TG TG TG TG TG TG TG TC
121341 CA * 10 18/20 CA CA CT CA CA CA CA CA CA GA
125170 TA * 11 20/22 TA TA TA TA CA TA TA TA CA TA TA
140883 AT * 11 21/22 AT AT AC AT AT AT AT AT AT AT AT
144262 AG * 12 22/24 AG AG AG CT AG AG AG AG AG AG AG AG
169525 CA * 16 30/32 CA CA CA CA CA CA CA CA CA CA CA CA CA CG CT CA
170097 CA * 12 22/24 CA CA TA CA CA CA CA CA CA CA CG CA
176126 TA * 17 32/34 TA TG TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT
189510 TA * 10 18/20 TA TA TA AA TA TA TA TG TA TA
189531 AT * 18 33/36 AT AT AT AT AT AT AT GT AT AT AT AT AT AT AT AT AC AC
191921 AT * 12 22/24 AT AT AT GT AT AT AC AT AT AT AT AT
191982 AT * 16 29/32 AT AT AT AT AT AT GT AT AT AT AA AT AT AT AT TT
193132 TA * 12 22/24 TA TA TA TA TA TA AA TG TA TA TA TA
196677 TG * 10 18/20 TG TG TG GG TG GG TG TG TG TG
228424 TG * 10 18/20 TG TG TG TG TG TG TG TA TG TA
244121 TA * 16 30/32 TA TA TA TA TG TT TA TA TA TA TA TA TA TA TA TA
250275 AT * 11 20/22 AT AT AT AT AT GT AT AC AT AT AT
256435 GT * 15 27/30 GT GT GT GT GT GT GT GT GT GT GT AT GT GG AT
259161 TC * 25 45/50 TC TC TC TC AC TC TC TC AC TC TC TC TC TC TC TC TC TC TC TC TG TC TC TT TG
260069 GA * 10 18/20 GA AA GA GA GA GA GA GA GC GA
263596 TG * 17 31/34 TG TG TG TA TG TG TG TG TG TG TG TG TG TG TG TG CC
267627 TG * 11 20/22 TG CA TG TG TG TG TG TG TG TG TG
267701 TG * 19 35/38 TG TG TC TG CG TG TG TG TG TG TG TG TG TG TG TG TG TG AG
273495 TC * 13 24/26 TC TC TC TC TC TC TC TC TC TC TC TC AT
278903 AC * 17 32/34 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC GC AT
286785 CA * 12 22/24 CA CT CA CA CT CA CA CA CA CA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 292926
Total number of repeats detected.............. 48
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 4 1 1 3 11 6 1 1 0 0 0
15 to 19 3 2 0 0 1 3 3 2 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 1 0 0 0
30 to 34 0 0 0 0 0 1 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 7 6 1 1 4 15 9 3 2 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
7 AT + 6 TA = 13
1 AG + 1 GA + 0 CT + 2 TC = 4
3 GT + 9 TG + 15 CA + 4 AC = 31
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7316092|gb|AE002629.1|AE002629 Drosophila melanogaster genomic scaffold 142000013386033, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295629|gb|AE003574.1|AE003574 Drosophila melanogaster genomic scaffold 142000013386033 section 2 of 2, complete sequence
Position Repeat Coverage Repeat
14284 TG * 12 22/24 TG TG TG TG TG TA TG TG TG TG CG TG
52543 CA * 21 38/42 CA CA CA CA CA GA CA CA CA CA CA CA CA CA CA CA CA CA AA GA TA
91214 TA * 11 20/22 TA TA TA TA TA TA TA TA TA TA NN
92819 GA * 17 31/34 GA CA GA GA GT GA GA GA GA GA GA GA GA GA GA GC GA
102961 AC * 10 19/20 AC AC AC AC AC AC AC AC AC TC
106993 CA * 16 29/32 CA CA CT AA CA CA CA CA CA CA CA CA CA CA CA CT
115190 TA * 10 18/20 TA TA CA TA TA TA TA TA TA TT
133019 AT * 11 20/22 AT CT AT AT AT AT GT AT AT AT AT
195659 CA * 11 20/22 CA AT CA CA CA CA CA CA CA CA CA
208684 AT * 13 24/26 AT AT AT TT AT AT AT AT AT AT AT AA AT
246618 CA * 11 20/22 CA CA CA CA CA CA CA CA CG CA CT
256456 AC * 18 33/36 AC AC AA AC AC AC AC AC AC AC AC AC AC AC AC AC TC AA
260941 TA * 19 35/38 TA TA TA TA TA TA TA TA TA AA TA TA TA AA TA TA AA TA TA
260987 AT * 10 18/20 AT AT AA AT AC AT AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 274456
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 2 0 0 1 2 1 0 0 0 0 0
15 to 19 0 1 0 1 1 1 0 0 0 0 0 0
20 to 24 0 0 0 0 0 1 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 3 0 1 2 4 1 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 3 TA = 6
0 AG + 1 GA + 0 CT + 0 TC = 1
0 GT + 1 TG + 4 CA + 2 AC = 7
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295620|gb|AE003573.1|AE003573 Drosophila melanogaster genomic scaffold 142000013386033 section 1 of 2, complete sequence
Position Repeat Coverage Repeat
23027 AT * 10 18/20 AT AT AT AT GT AT AT GT AT AT
67851 TA * 10 18/20 TA TA TG TA TA TA TG TA TA TA
78989 TA * 12 22/24 TA TA TA TA TA TA TA TA TG TA CA TA
107439 CA * 18 33/36 CA TA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA GC
111639 TA * 13 24/26 TA TA TA CA TA TA TA TA TA TG TA TA TA
169673 AT * 10 18/20 AT AT AT AT AT AA AT AT AT TT
228845 TG * 10 18/20 TG TG TG TG TG TG TG TG TG AC
237130 AG * 10 18/20 AG AG AG AG AG AG AG AG AT GG
254977 TA * 10 19/20 TA TA TA TA TA TA TA TA TA CA
257817 TA * 13 24/26 TA CA TA TA TA TA TA TA TA TA TA CA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 262131
Total number of repeats detected.............. 10
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 5 1 0 0 0 1 0 0 0 0 0
15 to 19 0 0 0 0 0 1 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 5 1 0 0 1 1 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 5 TA = 7
1 AG + 0 GA + 0 CT + 0 TC = 1
0 GT + 1 TG + 1 CA + 0 AC = 2
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7288912|gb|AE002813.1|AE002813 Drosophila melanogaster genomic scaffold 142000013385227, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 2620
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289135|gb|AE002822.1|AE002822 Drosophila melanogaster genomic scaffold 142000013385417, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1638
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289301|gb|AE002567.1|AE002567 Drosophila melanogaster genomic scaffold 142000013385554, complete sequence
Position Repeat Coverage Repeat
2749 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG TC GG
40098 TA * 10 18/20 TA TA TG TA TT TA TA TA TA TA
43129 TA * 10 18/20 TA TA TG TA TT TA TA TA TA TA
64671 TA * 10 18/20 TA TA TA CA TA TA CA TA TA TA
82098 AT * 11 21/22 AT AT AT AT AT AT AT AT AT AT AA
-----------------------------------------------------------------------------------------
Total sequence length......................... 84373
Total number of repeats detected.............. 5
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 3 0 0 0 0 1 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 3 0 0 0 0 1 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 3 TA = 4
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 1 TG + 0 CA + 0 AC = 1
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289214|gb|AE002930.1|AE002930 Drosophila melanogaster genomic scaffold 142000013385493, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1282
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289226|gb|AE003341.1|AE003341 Drosophila melanogaster genomic scaffold 142000013385503, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1242
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7316107|gb|AE002566.1|AE002566 Drosophila melanogaster genomic scaffold 142000013386054, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7291169|gb|AE003451.1|AE003451 Drosophila melanogaster genomic scaffold 142000013386054 section 35 of 35, complete sequence
Position Repeat Coverage Repeat
187 TA * 11 20/22 TA TA TT TT TA TA TA TA TA TA TA
5916 CA * 13 24/26 CA CT CA CA CA CA CA CA CA CA CA CA TA
22781 AC * 10 18/20 AC AC AT AC AC AC AC GC AC AC
43108 CT * 11 20/22 CT CT CT CT CT CT CT TT CT CT TT
48509 TA * 10 18/20 TA TA TT TA TA TA TA TT TA TA
58974 CA * 12 22/24 CA CA CA GA TA CA CA CA CA CA CA CA
60475 TG * 11 20/22 TG CA TG TG TG TG TG TG TG TG TG
61093 TG * 18 34/36 TG TG TT TG TG TG TG TG TG TG TG TG TG TG TG TG TG AG
64436 CA * 12 22/24 CA CA CA CA CA GA CA CG CA CA CA CA
64713 GA * 10 18/20 GA TA GA GA GA GA GA GA GA GC
74646 GT * 10 18/20 GT GT GT GT GT GT GT GT TT AT
76180 AC * 11 20/22 AC AC AC AC AG AC AC AC AC AC AT
76516 TA * 16 29/32 TA AA TA TA TA TA TA TT TA TA TA TA TA TA TA TT
80300 TG * 10 18/20 TG TA TG TG TG TA TG TG TG TG
89261 GT * 10 18/20 GT GT GT GT AT GT GT GT GT GC
89479 TG * 10 18/20 TG TG AT TG TG TG TG TG TG TG
93949 GA * 15 27/30 GA GA GA AA GA GA GA GA GA GA GA GA TA GA GT
94202 TG * 10 18/20 TG TG TG CG TA TG TG TG TG TG
98341 GT * 10 18/20 GT GT GT AT AT GT GT GT GT GT
100108 TC * 11 20/22 TC TA TC TC TC TC TC TC TC TT TC
101135 CA * 13 24/26 CA CA CG CA CA CA CA CA CA CA CA CG CA
101888 AC * 12 22/24 AC AC AC AC TC GC AC AC AC AC AC AC
101956 AC * 10 18/20 AC AG AC AA AC AC AC AC AC AC
110181 CA * 12 23/24 CA CA CA CA CC CA CA CA CA CA CA CA
111781 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TG TG TG TC TG CA
112363 GT * 16 29/32 GT GT GT GT GT GT GT GT GT GT GT GC TT GT GC GT
126252 AT * 12 22/24 AT AT AT AT AT AT AT AT TT GT AT AT
128982 GA * 11 20/22 GA CA GA TA GA GA GA GA GA GA GA
130495 AT * 11 20/22 AT AT AT AT AT AT AC AT AT AT AG
141531 AC * 13 24/26 AC AC AC AC AC GC AC AC AC AC AC AC AT
142390 CT * 11 20/22 CT CT CT CT CT CT CT CT CT CT AC
145860 CA * 11 20/22 CA CA AA CA CA CA CA AA CA CA CA
153783 TA * 11 21/22 TA TT TA TA TA TA TA TA TA TA TA
159093 AT * 18 34/36 AT AT AT AT AT AC AT AT AT AT AT GT AT AT AT AT AT AT
166980 TG * 18 33/36 TG AG TG TG TG TG TG TG TG TG TG TG TG AG TT TG TG TG
168100 AT * 11 20/22 AT AC AT AT AT GT AT AT AT AT AT
170660 TA * 11 20/22 TA TA AA TA TA TA TT TA TA TA TA
172610 GA * 11 20/22 GA GA GA GA GA AA GG GA GA GA GA
172633 AG * 10 18/20 AG CG AG AG AG AG AG AG AG AT
173933 GT * 10 18/20 GT GT GT GT TC GT GT GT GT GT
178133 TG * 13 24/26 TG TG TG TG TG TG TC TA TG TG TG TG TG
179250 GT * 18 33/36 GT GT GT GT GT GT CT GT GT GT CT GT GT GT AT GT GT GT
183433 CA * 18 33/36 CA CA CA CA AA CA CA CA CA CA CA CA CG CA CA CA CA GA
184990 AC * 17 32/34 AC AC AC AG AC AG AC AC AC AC AC AC AC AC AC AC AC
189332 AT * 10 18/20 AT AT AT AT AT AG AG AT AT AT
190622 GT * 13 24/26 GT GT GT GT GT GG GT GG GT GT GT GT GT
190740 AT * 17 31/34 AT AT AT CT AT AT AT AT AT AT AT GT AT AT AC AT AT
204975 TG * 10 19/20 TG TG CG TG TG TG TG TG TG TG
207488 AT * 11 20/22 AT AT AT GT AC AT AT AT AT AT AT
212614 AT * 10 18/20 AT AT AC AC AT AT AT AT AT AT
217826 AG * 10 18/20 AG AG AG AG AG CG AG AG TG AG
-----------------------------------------------------------------------------------------
Total sequence length......................... 220623
Total number of repeats detected.............. 51
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 6 4 2 3 5 6 6 5 1 2 0 0
15 to 19 2 1 0 1 1 1 3 2 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 8 5 2 4 6 7 9 7 1 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
8 AT + 5 TA = 13
2 AG + 4 GA + 2 CT + 1 TC = 9
7 GT + 9 TG + 7 CA + 6 AC = 29
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7291133|gb|AE003450.1|AE003450 Drosophila melanogaster genomic scaffold 142000013386054 section 34 of 35, complete sequence
Position Repeat Coverage Repeat
1351 GA * 10 18/20 GA AA GA GA CA GA GA GA GA GA
2114 TG * 12 22/24 TG CG TG TG TG TG TG TG TG TG TG TT
2199 GT * 10 19/20 GT GT GT GT GT GT GT GT TT GT
6215 CA * 10 18/20 CA CA CA CA CA CA CA CT CA CC
6551 AG * 15 27/30 AG AA AG AG AG AG AG AG AG AG AG AG AG AC GG
6795 TA * 16 29/32 TA TA TA TA AA TA TA TA TA TA TA TA TA TA CA CA
8333 AG * 13 24/26 AG AC AG AG AG AG AG AG AG AG AG AG AC
10347 AC * 11 20/22 AC AC AC AC AC TT AC AC AC AC AC
11443 AC * 11 20/22 AC TC AC AC AG AC AC AC AC AC AC
25635 TA * 10 18/20 TA TA TG TA TT TA TA TA TA TA
28666 TA * 10 18/20 TA TA TG TA TT TA TA TA TA TA
30755 GT * 10 18/20 GT GT GT GT GT GT GT GT GC CT
33475 AC * 17 32/34 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AG AG
34891 AC * 10 18/20 AC CC AC AC AC AC AC AC AC CC
36076 GA * 11 20/22 GA GA TA GA GA CA GA GA GA GA GA
44234 AC * 18 33/36 AC AC AC AC AC AC AC AC AC AC AT AC AC AT AC GC AC AC
48063 GT * 17 31/34 GT AT GT AT GT GT GT GT GT GT GT GT GT GT GT GT GC
49844 TG * 10 18/20 TG CG TG TG TG TG TG TG TG AG
49871 GT * 17 31/34 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GA GA GC
49907 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT AT GG
51446 AT * 10 18/20 AT AT AT AT AT AT AT AT TT TT
53299 TC * 13 24/26 TC TC GT TC TC TC TC TC TC TC TC TC TC
61107 AT * 10 18/20 AT AT AT AT AT AT AT CA AT AT
64047 CA * 12 22/24 CA CA CA CC CA CT CA CA CA CA CA CA
70340 TG * 11 20/22 TG TG TG TG TG TG TG TG AG TG TA
70457 CA * 10 18/20 CA CA CA CA CA CA CA AA AA CA
78155 AC * 13 24/26 AC AC AC AC AC AC AC GC AC AC AC AC AA
89116 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA AA CT
91769 AT * 10 18/20 AT AT AT AT AT AT AT AT AT TC
98455 TG * 11 21/22 TG TG TG TG TG TG TG TG TG TG TT
98529 GA * 13 24/26 GA GC GA GC GA GA GA GA GA GA GA GA GA
98984 AC * 10 18/20 AC AA AC AC AC AC AC AC AG AC
110400 TG * 12 22/24 TG TG TA TC TG TG TG TG TG TG TG TG
110481 GT * 11 20/22 GT GT GT TA GT GT GT GT GT GT GT
118964 CA * 10 18/20 CA CA CA CA CA CA CA CA CA TG
119395 AC * 10 18/20 AC AC AC AC AC AC AC GC AT AC
119431 AC * 10 18/20 AC AG AG AC AC AC AC AC AC AC
136743 AT * 14 26/28 AT AT AC AT AT AC AT AT AT AT AT AT AT AT
139541 AT * 10 18/20 AT CT AT AT AG AT AT AT AT AT
139847 GT * 10 18/20 GT GT GT GT GT GC TT GT GT GT
140139 TG * 10 18/20 TG CG TG TG TG TG TG TG TG CG
141837 TA * 11 20/22 TA TA TA TA TA TA TA TA TG TG TA
146125 TG * 16 30/32 TG TG TG TG TG TG TG TG TG TG TG TG TG TG GG TC
146346 AC * 11 20/22 AC AC AC AC TC AC AC AC AC AC AG
162696 TG * 16 29/32 TG TG TG TG TG TG TG TG TG TG TG TG TG TG AG CT
162783 TA * 13 24/26 TA TA TA TA TG TA AA TA TA TA TA TA TA
164047 AT * 16 29/32 AT AA AT AT AT AT AT AT AT AT AT AT AT AT AG TT
164786 TG * 11 21/22 TG TG TG TG TG TG TG TG TG TT TG
172909 TG * 12 23/24 TG TG TG TG TG AG TG TG TG TG TG TG
173416 GT * 23 43/46 GT GT GT GG TT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT AT
182796 TA * 10 19/20 TA TA TA TA TA TA TA TA TA GA
186248 AT * 11 20/22 AT AT AT AT AT CT AT TT AT AT AT
187612 GT * 17 31/34 GT AT GA GT GT GT GT GT GT GT GT GT GT GT TT GT GT
187760 TG * 17 31/34 TG TA TG TG TG TG TG TG TG TG TG TG TG TG TT AG TG
190191 AT * 10 18/20 AT AT AT GT AT AC AT AT AT AT
190582 TG * 12 22/24 TG TT CG TG TG TG TG TG TG TG TG TG
193935 CA * 13 25/26 CA CA CA CA CA CA CA CA CA CA CA CA TA
195274 CA * 11 20/22 CA CG CA CA CA CA CA CG CA CA CA
195300 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA GA CA TA
200301 TA * 10 18/20 TA GT TA TA TA TA TA TA TA TA
200326 TA * 10 18/20 TA CA TA AA TA TA TA TA TA TA
205080 AT * 12 23/24 AT AT AT AT AT AT AT AT AT AC AT AT
206469 AT * 10 18/20 AT AT AT AC AT AC AT AT AT AT
215747 TG * 10 18/20 TG TG TG TG TG TG TG TG TG GA
216100 AT * 11 20/22 AT CT AT AT AT AT GT AT AT AT AT
216124 AT * 13 24/26 AT AT AT AT AT AT AT AT AT TT AT AT AG
216733 TC * 10 18/20 TC TC TT TC TC TC TC CC TC TC
217131 TG * 11 20/22 TG CA TG TG TG TG TG TG TG TG TG
256275 AC * 12 23/24 AC AC AC AC AC AC AC AC AC AC AC TC
266684 AC * 11 20/22 AC AC AC AC AC AC AT AC AC AC AG
271461 AC * 10 18/20 AC AA AG AC AC AC AC AC AC AC
272028 TA * 11 20/22 TA TA CA TA TA TA CA TA TA TA TA
283761 TA * 11 20/22 TA TA TA TA TA TA TA TG TA TC TA
292320 AC * 10 18/20 AC AC AC GC AC AC AA AC AC AC
-----------------------------------------------------------------------------------------
Total sequence length......................... 300732
Total number of repeats detected.............. 74
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 11 9 1 3 12 8 11 5 2 0 0 0
15 to 19 1 1 1 0 2 0 3 3 0 0 0 0
20 to 24 0 0 0 0 0 0 0 1 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 12 10 2 3 14 8 14 9 2 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
12 AT + 10 TA = 22
2 AG + 3 GA + 0 CT + 2 TC = 7
9 GT + 14 TG + 8 CA + 14 AC = 45
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7291099|gb|AE003449.1|AE003449 Drosophila melanogaster genomic scaffold 142000013386054 section 33 of 35, complete sequence
Position Repeat Coverage Repeat
1272 TG * 12 22/24 TG AA TG TG TG TG TG TG TG TG TG TG
4413 CA * 12 22/24 CA CA CA CA CA CT CA CA CA CA CA CC
7869 AC * 15 28/30 AC AC AC AC AC AC AC AC AC AC AC AC AC AT AT
11527 TG * 12 22/24 TG TG TG TG TG TG TG TG TG CG TT TG
15553 TA * 10 18/20 TA TA TA TA TA TA TA TA TT AA
30270 AG * 12 22/24 AG AA TG AG AG AG AG AG AG AG AG AG
38208 CA * 10 18/20 CA CA TA GA CA CA CA CA CA CA
43922 GA * 10 18/20 GA AA GA GA TA GA GA GA GA GA
43943 AG * 12 22/24 AG AG AG AG AG CG AG AG AG AA AG AG
45131 TC * 12 22/24 TC TT TC CC TC TC TC TC TC TC TC TC
45642 TA * 10 18/20 TA TA TA AA TA TA TA TA TA TT
45815 CA * 11 20/22 CA CA CA CA CA CA AA CA CA CA CG
47766 TA * 10 18/20 TA AA TA TA TA TA TA TA TA TT
48036 TA * 10 18/20 TA TA TA TA TA CT TA TA TA TA
58013 CA * 14 26/28 CA CA CA CA CA CA CA CA CA CA CA AA CA CG
82785 CT * 11 20/22 CT CT CT CT CT TT CT CT CT CT TT
108647 TA * 20 36/40 TA TA TA TA TA TA TA TA TA TT TA TA TA TC TA TA TA TA GA TC
110034 AG * 11 20/22 AG AA AT AG AG AG AG AG AG AG AG
111816 AT * 17 31/34 AT AT AT AT GT AG AT AT AT AT AT AT AT AT AT TT AT
112141 GA * 13 24/26 GA GC GA GA GA GA GA GA GA GA GA GA GG
120489 GT * 10 19/20 GT GT GT GT GT GT GT GT GT GG
122787 CT * 11 20/22 CT CT CT CT CT CT CC CT CA CT CT
156598 TC * 11 20/22 TC TC TC TC CC TC TC TC TC TC TG
156850 TA * 15 28/30 TA AA TA TA TA TA TA TA TA CA TA TA TA TA TA
159712 GT * 10 19/20 GT GT GT AT GT GT GT GT GT GT
160814 AT * 11 20/22 AT AT AT CT AT AT CT AT AT AT AT
163728 CT * 15 27/30 CT CT CT CT CT CT CT CT CT TT CT TT CT CT CG
164063 AT * 11 20/22 AT AC AT AT AT AT CT AT AT AT AT
168325 AT * 13 25/26 AT AT AT AT AT AT AT AT GT AT AT AT AT
176598 TG * 10 18/20 TG AT TG TG TG TG TG TG TG TG
178160 AT * 11 20/22 AT AT AT AT AT AT AT AT TT CT AT
182944 TA * 10 18/20 TA TA TT TA CA TA TA TA TA TA
184733 AC * 12 22/24 AC CC AC AC AC AC AC AC AC TC AC AC
184758 CA * 13 24/26 CA CA CT CA CA CT CA CA CA CA CA CA CA
186038 GT * 10 18/20 GT GT GT AT GT GT GT GT GT TT
186457 TG * 17 32/34 TG TG TC CG TG TG TG TG TG TG TG TG TG TG TG TG TG
196981 TG * 10 18/20 TG CG TG TG TG TG TG TG GG TG
200024 CA * 10 18/20 CA CC CA CA CA CA TA CA CA CA
200999 TG * 10 18/20 TG TC TC TG TG TG TG TG TG TG
201914 CA * 16 30/32 CA CA CA CA CA CA CG CA CA CA CA CA CG CA CA CA
202631 AT * 10 18/20 AT AG AT AT AT AA AT AT AT AT
202895 AG * 22 40/44 AG AG AG AG CG AG AG AG AG AG AG AG AG AG AG AG AG AG AG CT AT AG
216117 CA * 10 18/20 CA CA CA CA CA CA CA CA CT CT
217451 AC * 12 22/24 AC TC AC AC AC CC AC AC AC AC AC AC
219816 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TG TG TG TG TA CA
221697 CT * 15 27/30 CT CT CT CT CT CT CT CT CT CT TT CT CG CT CG
221874 AG * 15 27/30 AG AG AG AG AG AG AG AG AG AG AG AG AG GG GC
222276 GT * 11 20/22 GT GT GT GT GT GT GT GT GT TT TT
222558 GT * 11 20/22 GT GT GT GT GT GT GT TG GT GT GT
230538 TG * 10 18/20 TG TG TG TG TT TG TG TT TG TG
231249 GT * 10 18/20 GT GT GT GT GT GT GT GT GC GA
233631 CA * 12 22/24 CA CA TG CA CA CA CA CA CA CA CA CA
233708 CA * 25 46/50 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CG CG TA CA CA CA CT CA
236574 CA * 10 18/20 CA AG CA CA CA CA CA CA CA CA
236999 AT * 13 24/26 AT GT AT AT GT AT AT AT AT AT AT AT AT
244383 AC * 12 22/24 AC AC AC AC AC AC AC AG AC AC AC TC
251865 TA * 11 20/22 TA TA TA TA TG TA TA TA TT TA TA
256332 AT * 27 50/54 AT AT AT AT AC AT AT AT AT AT AT CT AT AT AT AT AT AT AT AT AC AT AT AT AT AG AT
256801 AT * 13 24/26 AT AA AT AT AC AT AT AT AT AT AT AT AT
260513 AG * 10 18/20 AG AG AT TG AG AG AG AG AG AG
262947 AC * 10 18/20 AC AC GC AC AC AC TC AC AC AC
285890 GT * 15 28/30 GT GT GT GT GT TG GT GT GT GT GT GT GT GT GT
286313 GT * 13 25/26 GT GT GT GT GT GC GT GT GT GT GT GT GT
287454 TG * 25 46/50 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TA TC TG TA AG
287826 TG * 10 18/20 TG TA TG TG TG TG TG TT TG TG
288480 TA * 15 27/30 TA AA TA TA TA TT TA TA TA TA TA TA TA TA TT
288531 GA * 10 18/20 GA GA GA GA GA GA GA TA CA GA
294442 TA * 11 20/22 TA TA TA TA TA TA TA TA TA TT TT
295831 AG * 16 29/32 AG AG AG AA AG AG AG AG AG AG AG AG AG AG CG CG
297635 TG * 10 18/20 TG AC TG TG TG TG TG TG TG TG
297673 TG * 10 18/20 TG TG TC TG TG TG TG TG TG GG
298035 TC * 12 22/24 TC TG CC TC TC TC TC TC TC TC TC TC
-----------------------------------------------------------------------------------------
Total sequence length......................... 299786
Total number of repeats detected.............. 72
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 7 7 4 3 4 9 9 7 3 2 0 0
15 to 19 1 2 2 0 1 1 2 1 0 2 0 0
20 to 24 0 1 1 0 0 0 0 0 0 0 0 0
25 to 29 1 0 0 0 0 1 1 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 9 10 7 3 5 11 12 8 3 4 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
9 AT + 10 TA = 19
7 AG + 3 GA + 4 CT + 3 TC = 17
8 GT + 12 TG + 11 CA + 5 AC = 36
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7291077|gb|AE003448.1|AE003448 Drosophila melanogaster genomic scaffold 142000013386054 section 32 of 35, complete sequence
Position Repeat Coverage Repeat
612 AC * 10 18/20 AC AC AC AT AC AC AC AC AA AC
3793 AT * 10 18/20 AT CT AT AT AT AT AC AT AT AT
13038 AG * 10 18/20 AG AG AG AG AG AG AG AG AG GA
20023 GT * 11 20/22 GT GT GT GT GT GT GT GT GT TT GA
20252 AC * 12 22/24 AC AA AT AC AC AC AC AC AC AC AC AC
29840 CA * 10 18/20 CA CG CA CT CA CA CA CA CA CA
33996 GA * 11 20/22 GA GA AA GA GA GA GA GA GA GA TA
36860 CA * 17 32/34 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA GA GA
45564 AT * 13 24/26 AT AT AT AT AT AT AT AT AT AG AT AT TT
46088 CT * 10 19/20 CT CA CT CT CT CT CT CT CT CT
51181 CA * 17 32/34 CA CA CA CA CA CA CA CA CA TA CA CA CG CA CA CA CA
51378 CA * 13 25/26 CA CA CA CA CA CA CA CG CA CA CA CA CA
52257 AT * 12 22/24 AT AT AT GT AG AT AT AT AT AT AT AT
55528 AG * 11 20/22 AG AG CG AA AG AG AG AG AG AG AG
55678 GA * 10 18/20 GA GA GC GA GA GA GA GC GA GA
55988 TA * 11 20/22 TA TA TA TA TA TA TA TG CA TA TA
56029 AT * 10 19/20 AT AT AT AT AT AT AT AT AT TT
58924 TA * 16 29/32 TA TA TA AA TA TA TA TA TA TA TA TA TA CA TA CA
62170 TG * 10 18/20 TG TG CG TG TG TG TG CG TG TG
63375 CA * 12 22/24 CA CA CA CA CA CA CA CA GA CG CA CA
63575 CA * 10 18/20 CA TA TA CA CA CA CA CA CA CA
66098 GA * 11 21/22 GA GA GA GC GA GA GA GA GA GA GA
67975 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AC GC TC
74560 TA * 16 29/32 TA TA TA TA AA TA TA TA TA CA TA TA TA TA CA TA
76882 AC * 15 27/30 AC AC AC AC AC GC AC AC AC AC AC AC AC AG TC
94523 AT * 15 27/30 AT AT AA AT AT AT AT AT AT AT AT AT TT AT AA
96287 TA * 11 20/22 TA TA TA TA TA TA TG GA TA TA TA
96674 GT * 19 35/38 GT GT GT GT GT GT GT GT GT GT GT GT GT CT GT CT GT GC GT
105593 TC * 13 24/26 TC TC AC TC TC TC TC TC TC TC TC TG TC
105693 CT * 13 24/26 CT CT CT CT CT CT CT CT CT CT CC CT GT
105905 CT * 10 18/20 CT CT CT CC CT CT CT CT GT CT
107408 GT * 10 18/20 GT GT GT GT GT GT GT GT TT TT
109848 TA * 10 18/20 TA TA TG TA CA TA TA TA TA TA
111043 AC * 15 28/30 AC AC AC AC AC AC AC AC AC AC AC AT AC AC TC
112204 AC * 16 30/32 AC AC AC TC TC AC AC AC AC AC AC AC AC AC AC AC
119066 TA * 10 18/20 TA TA TA TA TA TA TA TA TA GT
120995 AT * 10 18/20 AT AT AT AC AT AT AT GT AT AT
137032 AT * 10 18/20 AT AT AA AT AT AT AT AT AT TT
140735 AT * 16 29/32 AT AT AT AT AT AT TT AT AT AT AT AT AT AT CT TT
145395 TA * 16 29/32 TA CA TA TA TA TA TA TA TA TA TG TA TA TA TC TA
146639 CA * 10 18/20 CA CA CA CA CA CA CA CG GA CA
147113 CA * 12 22/24 CA GA CA CA CA CA CA CA CC CA CA CA
147309 CA * 11 20/22 CA CA CA CC CA CA CA CA CA CA CC
150523 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TG GG TG TG CG CG
155057 AC * 10 18/20 AC AA AC AC TC AC AC AC AC AC
156673 CA * 20 36/40 CA CA AA CA CA CA CA CA CA CA CA CA CA CA CA CA CA GA GA AA
159132 CA * 15 27/30 CA CA CA CT CA CA CA CA CA CA CA CA CA CA TT
160118 AT * 11 20/22 AT GG AT AT AT AT AT AT AT AT AT
167988 AT * 23 42/46 AT AT AT AT AT AT AT AC AT AT AT AT AT AT AG AT AT AT AC AT AT AA AT
169625 TG * 13 24/26 TG TG TG CG TC TG TG TG TG TG TG TG TG
172919 GT * 11 20/22 GT GT GC GT GT GT GT GT GT GT TT
177110 TG * 12 22/24 TG TG AG TG TG CG TG TG TG TG TG TG
177185 GT * 15 27/30 GT TT GT GT GT GT GT GT GT GT GT GA GT GT CT
181382 GT * 16 30/32 GT GT GT GT GT GT GT GT GT GT GT GT GT GA GT GG
183250 GT * 12 22/24 GT GT GT GT GT GT GT GT GT AT GA GT
184428 CA * 10 18/20 CA CA TG CA CA CA CA CA CA CA
187584 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC AC AC TT
207056 AT * 11 20/22 AT AT TA AT AT AT AT AT AT AT AT
207677 AC * 11 20/22 AC AC AC AC AC GT AC AC AC AC AC
208181 TG * 12 23/24 TG TG TG TG TA TG TG TG TG TG TG TG
208308 TG * 21 38/42 TG TG TG TG CG TA TG TG TG TG TG TG TG TG TG TG TG TG TT TA TG
209661 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC AC TC GC
209895 CA * 13 24/26 CA CA AG CA CA CA CA CA CA CA CA CA CA
210660 CA * 11 20/22 CA CA CA CA CA CA GG CA CA CA CA
210919 TC * 12 22/24 TC TC TC TC TC TC TC TC TC TC TT TA
212632 TG * 12 22/24 TG TG TG TG TG CG TG TG TG TT TG TG
215963 GT * 10 18/20 GT TT GT GT GT GC GT GT GT GT
216784 TC * 10 18/20 TC TC TC CC TC TC TC TC TG TC
216870 TG * 10 18/20 TG TG TG AG TG TG TG TG TG GG
218269 AT * 17 31/34 AT AT AT AT AC AT AT AT AT AT AT AT AG AT AT AT GT
222784 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TG TG TC TG TG CA
240400 AC * 10 18/20 AC AC AA AC AC AC AC AC AC AG
257286 AG * 11 20/22 AG AG AG AG AG AG AG AG AG TG AA
258663 GT * 10 18/20 GT GA CT GT GT GT GT GT GT GT
266635 CA * 12 23/24 CA CA CA CA CA CA CA CA CA CA CA CG
268795 AT * 10 18/20 AT AT AG CT AT AT AT AT AT AT
270675 GT * 15 28/30 GT GT GT GT GT GT GT GT TT GA GT GT GT GT GT
271271 CT * 10 18/20 CT CA CT CT CT CT CT CT CT CC
272514 CT * 10 18/20 CT CT CT CT GT CT CT GT CT CT
278624 CA * 15 28/30 CA CA TA CG CA CA CA CA CA CA CA CA CA CA CA
279875 CA * 11 20/22 CA CA CA CA CA CA CA CG CA AA CA
280361 CA * 10 18/20 CA CA TA CA CG CA CA CA CA CA
280922 AC * 10 18/20 AC GC AC AT AC AC AC AC AC AC
284495 TG * 10 18/20 TG TG TG TG TG TG TG TG TC TT
288142 CA * 10 18/20 CA CA CA CA CA CA CA CA CA AC
295147 TG * 13 24/26 TG TA TG TG TG TG TG TG TG TG TG TG TA
296322 GT * 10 18/20 GT GT GT GT GT GT GT GC GT GC
297855 AC * 10 18/20 AC AC AC AC AC AC TC AC AC TC
301773 TC * 17 31/34 TC AC CC TC TC TC TC TC TC TC TC TC TC TC TC TC TG
302470 TC * 11 20/22 TC TC TC TT TC TC TC CC TC TC TC
304318 GT * 16 30/32 GT GT GT GT GT GT GT GT GT GT GT TT GT GT GT GC
307557 TG * 16 29/32 TG TG TG TG TG TG TG TG TG TG TG TG CG TG CT TG
309418 TA * 12 22/24 TA TA TA TA TA TA TA TA TG TA TA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 310399
Total number of repeats detected.............. 93
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 9 5 3 3 10 14 8 7 4 5 0 0
15 to 19 3 3 0 0 3 4 3 5 1 0 0 0
20 to 24 1 0 0 0 0 1 1 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 13 8 3 3 13 19 12 12 5 5 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
13 AT + 8 TA = 21
3 AG + 3 GA + 5 CT + 5 TC = 16
12 GT + 12 TG + 19 CA + 13 AC = 56
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7291054|gb|AE003447.1|AE003447 Drosophila melanogaster genomic scaffold 142000013386054 section 31 of 35, complete sequence
Position Repeat Coverage Repeat
776 AT * 12 22/24 AT AC AT AC AT AT AT AT AT AT AT AT
6929 TA * 11 20/22 TA TA TA TG TA TA TA TA TA TA TG
14345 AC * 30 54/60 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AA GT GT AC AC AC AC CC
15473 AT * 14 26/28 AT AT AT AT AT AT AT AA AT AT GT AT AT AT
16584 TA * 11 20/22 TA TT TA TA TA TA TA TA TG TA TA
19421 TC * 10 18/20 TC TC AC TC GC TC TC TC TC TC
20218 TC * 11 20/22 TC TC TC TC TC TC TC TT TT TC TC
23509 AT * 10 18/20 AT AT TT AT AT AT TT AT AT AT
23966 AT * 15 27/30 AT AT AT AT AT AT AT AT AC AT AC AT AT AT AA
43037 CT * 20 36/40 CT CG CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT TA TT
45263 AT * 10 19/20 AT AT GT AT AT AT AT AT AT AT
48146 AT * 13 24/26 AT AT AT AC AT AT AC AT AT AT AT AT AT
59736 CA * 12 23/24 CA CA CA CA CA CA CA CA CA CA CA TA
63788 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TA TG TT
64662 AC * 20 36/40 AC AC TC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AT GC CC
64872 CA * 10 18/20 CA CA TA CA CA CA CA CA CA GA
65968 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG CG AG TG
66168 CA * 12 23/24 CA CA CA CA CG CA CA CA CA CA CA CA
67192 TC * 10 18/20 TC TC TA TC TC TC TC TC TA TC
68973 TG * 12 23/24 TG TG TG TG TG TG TG TG TG TG TG TA
71742 TC * 12 23/24 TC GC TC TC TC TC TC TC TC TC TC TC
74779 AC * 15 28/30 AC AC AC AC AC AC AC AC AC AC AC AC GC AC AG
76278 AC * 13 24/26 AC AC AC AC AC AC AC AC GC AC GC AC AC
84680 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TG TG TG TG GG GC
87522 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CT CA CG
93735 CA * 10 18/20 CA CA AA CA CA CA CG CA CA CA
93770 CA * 10 18/20 CA CA CT CA TA CA CA CA CA CA
96080 TG * 13 25/26 TG AG TG TG TG TG TG TG TG TG TG TG TG
100108 AT * 12 22/24 AT AT AT AT AT AT AT AC AT AT AT AC
102125 TG * 16 30/32 TG TA TG TG TG TG TG TG TG TG TG TG TG TG TG TT
103106 TA * 11 21/22 TA TA TA TA TA TA TA TA TA CA TA
106094 GT * 10 18/20 GT GT GT GC GT GT GT GT GT GC
107482 CA * 10 18/20 CA CA CA CA CA CA CA CA CC CT
107876 GT * 15 27/30 GT GT GT GT AT GT GT GT GT GT GT GT GC GT TT
113088 CA * 10 18/20 CA CA CA CA CA CA CA CA TG CA
114076 TG * 10 18/20 TG TA TG TG TG CG TG TG TG TG
114770 TG * 11 20/22 TG TG TG TG TG TG TG TT TG GG TG
116046 AC * 10 18/20 AC TC AC AC AC AC AC AT AC AC
120110 CT * 11 20/22 CT CT GT CT TT CT CT CT CT CT CT
136624 CA * 10 18/20 CA CA CA CG CA CA CA CA AA CA
138027 TC * 13 24/26 TC TC TC TC TC TC TC TC TC TC TA GC TC
139335 CA * 12 22/24 CA CA CG CA CA CA CA CA CA CA CA GA
148766 CA * 10 18/20 CA AA CA CA CA CA CA CA CA CG
152522 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TG CC
153621 AT * 15 28/30 AT AT AT AT AT AT AT AT AT AT AT AT AT AT TG
159841 CA * 12 22/24 CA CA CA CA CA CA CA CA TA CG CA CA
161380 GA * 11 20/22 GA GA GA AA GA GC GA GA GA GA GA
161486 AG * 15 28/30 AG CG AG AG AG AG AG AG AG AG GG AG AG AG AG
162341 CA * 10 18/20 CA CA CA CA CA CA CA CA TA CG
165971 CT * 10 18/20 CT CT CT CT AT CT CA CT CT CT
178596 AC * 13 24/26 AC TC AC AC AC AC AC AC AC AC GC AC AC
178802 TC * 11 20/22 TC TC TC TC TC TC TC CC TC TC TG
184628 TA * 10 18/20 TA CA TA TA TA TA TA TA TA AA
185173 GT * 17 31/34 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GC GG GG
186843 TA * 22 40/44 TA TA TA TA TT TA TA TA TA TA TA TA TA TA TA TA TA TA AA TA AG TA
187964 TG * 12 22/24 TG TG TG CG TG TG TG TA TG TG TG TG
188356 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AA AC
188587 GT * 17 32/34 GT GT GT GT GT GT GT GT GT GT GT GT GT GC GT GT GA
190039 AC * 15 27/30 AC AC AC AC AC AC AC AC AC AC AC AC GC AA AG
190295 AC * 16 29/32 AC AC CT AC AC AC AC AC AC AC AC AC AC AC AC AT
195473 AT * 11 21/22 AT AT AT TT AT AT AT AT AT AT AT
197532 AC * 12 22/24 AC AC GC AC AC TC AC AC AC AC AC AC
197580 AC * 15 28/30 AC AC CC AC AC AC AC AC AC AC AC AC AC AT AC
198098 TG * 16 30/32 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG GC
201302 TA * 12 22/24 TA TT AA TA TA TA TA TA TA TA TA TA
204234 CA * 18 33/36 CA AA CA CA CA CA CA CA CA CA CA CA CA CA AG CA CA CA
206091 AC * 10 18/20 AC CA AC AC AC AC AC AC AC AC
207494 AG * 21 39/42 AG AG AG AG AT AG AG AG AG AG AG AG AG AG GG AG AG AG AG TG AG
207538 AG * 11 20/22 AG AG AG AG AG AG AG AG GG AG AA
209712 CT * 21 38/42 CT CT CT CT CT CT CC CT CT CT CT CT CT CC CT CT CT GT CT CC CT
211070 GT * 18 34/36 GT GT GT CT CT GT GT GT GT GT GT GT GT GT GT GT GT GT
213408 TG * 12 22/24 TG TG TG CG TG TG TG TC TG TG TG TG
236660 AT * 10 18/20 AT AT AT AT AT AT AT AT TT TT
237937 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AG AG
238487 AT * 10 18/20 AT AT AT AT AT AT AT AT AT TA
246989 AC * 10 18/20 AC GT AC AC AC AC AC AC AC AC
247654 AT * 17 31/34 AT AT AT AT AT AT AT GT AT AT GT AT AT AT AC AT AT
250746 GA * 12 22/24 GA GC GA GA GA GA GA GA GA GT GA GA
253681 AG * 10 18/20 AG AG AG CG AG AG AG AG CG AG
253809 AT * 10 18/20 AT AT AT AT AA AT AT AA AT AT
273331 AT * 11 20/22 AT GG AT AT AT AT AT AT AT AT AT
279719 TA * 11 20/22 TA TA TA TA TA TA TA CA TA TT TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 304060
Total number of repeats detected.............. 82
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 13 6 2 2 6 13 9 1 6 2 0 0
15 to 19 3 0 1 0 4 1 3 4 0 0 0 0
20 to 24 0 1 1 0 1 0 0 0 0 2 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 1 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 16 7 4 2 12 14 12 5 6 4 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
16 AT + 7 TA = 23
4 AG + 2 GA + 4 CT + 6 TC = 16
5 GT + 12 TG + 14 CA + 12 AC = 43
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7290992|gb|AE003446.1|AE003446 Drosophila melanogaster genomic scaffold 142000013386054 section 30 of 35, complete sequence
Position Repeat Coverage Repeat
3820 AT * 11 20/22 AT AT AT AT AT AT GT AT AT AT AG
8522 CT * 12 22/24 CT TT CT CC CT CT CT CT CT CT CT CT
11025 GA * 10 18/20 GA GA GG GG GA GA GA GA GA GA
11132 TC * 11 20/22 TC TA TC TC TC TC TC TC TC AC TC
11448 GT * 15 27/30 GT GT GT AT GT GT GT GT GT GT GT GT GA GT GC
17716 CA * 11 20/22 CA CG CA CA CA CA CA CA CA CA GA
21907 TG * 10 19/20 TG TG TG TG TG TG TG TG TG CG
23192 TA * 11 20/22 TA CA TA CA TA TA TA TA TA TA TA
37394 CA * 11 21/22 CA CA CA CA CA CA CA CA CA CA AA
50798 TA * 10 18/20 TA TA TA CA TA TA CA TA TA TA
67537 GT * 20 36/40 GT GT GT GT GT GT GT GT GT GT GT GT GT GC AT TT GT GT GT TT
80680 CA * 14 26/28 CA CA CA CA CA CA CA CA CA CA CA CA CA TG
83747 CA * 11 21/22 CA CA CA CA CA CA CA CA CA CA CG
83976 TA * 13 24/26 TA TA TC TA TA CA TA TA TA TA TA TA TA
86060 CT * 10 18/20 CT CT CT CT CT CT CT CT CG TT
86504 GT * 11 20/22 GT GT GT GT GA GT GT GA GT GT GT
90867 TA * 13 24/26 TA TA TA TA AA TA TA TA TA CA TA TA TA
91969 TA * 10 18/20 TA TA TA TA TA TA TA TT TG TA
94963 GA * 11 20/22 GA TA GA GC GA GA GA GA GA GA GA
103308 TG * 15 27/30 TG CG TG TG TG TG TG TG CG TG TG TG TG TG TA
112975 TA * 10 18/20 TA TA CA TA TA TA TA TA TA AA
120271 TA * 13 24/26 TA TA TG TA TA TT TA TA TA TA TA TA TA
120616 TA * 11 20/22 TA TG TG TA TA TA TA TA TA TA TA
120643 TA * 10 18/20 TA TA TA TA TA TA TA TA TA AT
120745 TA * 22 40/44 TA TA TT TA TA TT TA TA TA TA TA TA TA TA TT TA TA TA TA TA TG TA
130551 TA * 11 20/22 TA TT TA AA TA TA TA TA TA TA TA
132221 TG * 14 26/28 TG TG TG TG TG TG TG TG TG TG TG TG TG GC
132882 GT * 10 18/20 GT GT GT GA GT GT GT GT GT GC
133527 GT * 10 18/20 GT GT GT GT GT GT GT GC GT GC
139354 AC * 11 21/22 AC AC AC AC AC AC AC AC AC AC GC
140414 CA * 12 22/24 CA CA CA AA CA AA CA CA CA CA CA CA
141047 AC * 17 31/34 AC AC AC AC AC AC AC AC AC AC AC AC GC CC AT AC AC
141783 AG * 12 22/24 AG AT AG AG CG AG AG AG AG AG AG AG
143671 TA * 14 26/28 TA TA TA TA TA TA CA TA TA TA TA TA TA TN
144698 AT * 10 18/20 AT AT AT CT AT AT AT AC AT AT
147421 TA * 10 18/20 TA TA TA TA TA TA CA TG TA TA
147522 AT * 12 23/24 AT AT AT AT AC AT AT AT AT AT AT AT
149547 AT * 18 33/36 AT AT AT AT AT AT AT AT AT AC AT AT AT AT AT AT AT GC
150632 AT * 11 20/22 AT AT AT GT AT AT AT AT AT AC AT
151221 AT * 10 18/20 AT AT TT AT AT AT AT AT AC AT
151368 AT * 27 49/54 AT AT AT AT AC AT AT AT AT AC AT AT AT AT AC AT AT AT AT AT AT AT AT AT GT GT AT
152562 AC * 12 23/24 AC AC AC AC AC AC AC AC AC AC AC AT
156192 CA * 10 18/20 CA CA CC CA CA CC CA CA CA CA
156384 AT * 10 18/20 AT AT AT AT GT AA AT AT AT AT
156404 TA * 16 29/32 TA TA TA TA TA TA CA TA TA TA TT TA TA TA TA CA
158319 AG * 36 65/72 AG AA AG AG TG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AA AA GT GG
173108 AT * 14 26/28 AT AT AT AC AT AT AT AT AT AT AT GT AT AT
179882 AT * 10 18/20 AT AT AT AT AT AT AT AT AT TA
182060 TA * 10 18/20 TA CA TA TA TA TG TA TA TA TA
234719 TA * 15 27/30 TA TA TA GA TA TA TA TA TA TG TA TA TA TA TC
251956 AG * 17 31/34 AG AG CA AG AG AG AG AG AG AG AG AG AG AG AG CG AG
262701 TA * 11 20/22 TA TA TA TA TA TA TA TA TT TA TT
265288 TA * 16 30/32 TA TA TA GA TA TA TA TA AA TA TA TA TA TA TA TA
267233 AT * 10 18/20 AT AT AC AT AT AT AT AT GT AT
269207 CA * 12 23/24 CA CA CA CA CA CA CA CA CA CA CT CA
272978 TC * 10 18/20 TC TC TC TC TC TC TC GC GC TC
273588 AG * 11 20/22 AG AG AA AG AG AG AG AG AG AG TG
276436 GT * 35 63/70 GT AT GT AT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GC GT GT GT GC GA GT GT GC GT GT GT GA
278206 AT * 13 24/26 AT AT CT AT AT AT AT AT AT AT AT AT GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 303104
Total number of repeats detected.............. 59
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 10 14 2 2 2 7 2 3 2 2 0 0
15 to 19 1 3 1 0 1 0 1 1 0 0 0 0
20 to 24 0 1 0 0 0 0 0 1 0 0 0 0
25 to 29 1 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 1 0 0 0 0 1 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 12 18 4 2 3 7 3 6 2 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
12 AT + 18 TA = 30
4 AG + 2 GA + 2 CT + 2 TC = 10
6 GT + 3 TG + 7 CA + 3 AC = 19
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7290970|gb|AE003445.1|AE003445 Drosophila melanogaster genomic scaffold 142000013386054 section 29 of 35, complete sequence
Position Repeat Coverage Repeat
6265 TG * 12 23/24 TG TG TG TG TG TG TG TG TG TG TG AG
11592 GT * 11 20/22 GT GT GT GT GT GT GT GT AT GT GC
16665 AT * 10 18/20 AT AT AT GT AT AT AT AT TT AT
17124 AT * 20 36/40 AT AT AT AG AT AT AT GT AT AT AT AT AT AT AT GT AT AT AT TT
17279 CA * 12 22/24 CA CA CA CA CA CA CA CA CG CA CA CC
26523 TG * 18 33/36 TG TG TG CG TG TG TG TG TG TG TG CG TG TG TG TG TG AG
27669 AC * 10 18/20 AC AC AC AT GC AC AC AC AC AC
28202 TG * 17 32/34 TG TG TG TG TG TT TG TG TG TG TG TG TG TG TG TG TA
30309 TG * 15 28/30 TG TG TG TG TG TG TG TG TG TG CG AG TG TG TG
38204 CA * 13 24/26 CA TA CA CA CA CA CA CA CA CA CA CT CA
40870 CT * 10 18/20 CT CT CT CT CG CT CT CG CT CT
44717 AT * 10 18/20 AT AC AT AC AT AT AT AT AT AT
45637 AT * 10 19/20 AT AT AT AT AT GT AT AT AT AT
56483 AT * 12 22/24 AT AT AT AG AT AT AA AT AT AT AT AT
65213 TG * 10 18/20 TG TG TG TG TG CG TG TG TG GG
68887 AG * 10 19/20 AG AG AG AG AG AG AG AG AG AT
69117 AC * 13 24/26 AC GC AC AC AC AC AC AC AC AC AC AC AT
75081 CA * 10 18/20 CA CA CA CA CA TA GA CA CA CA
78389 TA * 10 18/20 TA TG TA TG TA TA TA TA TA TA
78961 AT * 10 19/20 AT AT AT AT AT AT AT AT TT AT
82611 AT * 13 24/26 AT AT AT AC AT AC AT AT AT AT AT AT AT
84776 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TT TC
87984 AG * 10 18/20 AG CG AG AG AG AG AG GG AG AG
92150 GT * 11 20/22 GT AT GT GT GT GT GT GT GT GT TT
96189 GA * 10 18/20 GA GA GA GA TA GA GA TA GA GA
97486 AT * 12 22/24 AT AT AT AC AT AT AT AT GT AT AT AT
97554 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT AT TT
98257 CA * 24 44/48 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CG CA CA CA GG CG CA CA
98519 TG * 10 18/20 TG TG TG TC TG TT TG TG TG TG
98823 TG * 20 37/40 TG TG TG AG TG TC TG TG TG TG TG TG TG TG TG TG TG TG TG CG
99910 AC * 15 28/30 AC AC TC GC AC AC AC AC AC AC AC AC AC AC AC
100534 GT * 13 24/26 GT GT GC GT GT AT GT GT GT GT GT GT GT
100724 TG * 15 27/30 TG AG TG TG TG CG TG TG TG TG TG TG TG TG TT
102340 CT * 18 33/36 CT TT CT CT CT CT CG CT CT CT CT CT CT CT CT CT AT CT
107886 AT * 10 18/20 AT AT AT AT AT AT GT AT GT AT
112340 GT * 17 31/34 GT GC GT GC GT GT GT GT GT GT GT GT GT GT GT GC GT
112570 CA * 15 27/30 CA CA CA CA CA CG CA CA CG CA CA CA CA CA GA
116367 AT * 16 29/32 AT AT AT AT AT GT AT AT AT AT AT AT GT AT AT AC
127309 AT * 12 22/24 AT AT AT AT AT AT AC AT AT AT AT GT
133522 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TA TC
146801 GT * 11 20/22 GT GT GT GT GT GT GT GT GT GA GC
148598 AT * 12 23/24 AT AT AT AT AC AT AT AT AT AT AT AT
154829 TA * 10 18/20 TA TA TA TA CA TA TA TA TA TC
156640 TA * 11 20/22 TA GA TA TA GA TA TA TA TA TA TA
158792 AT * 12 23/24 AT AT AT AT AT AT AT AT AA AT AT AT
160006 GT * 16 29/32 GT GT GC GT GT GT GT GT GT GT GT GT GT GT AT GG
160083 AG * 11 20/22 AG AG AG AG AT AG AA AG AG AG AG
169079 AT * 11 20/22 AT AT AT AT AT AT AT AT AG AT AA
170131 CA * 12 22/24 CA CA CA CA TA CA CA CA CA CC CA CA
171122 CA * 10 18/20 CA AA CA AA CA CA CA CA CA CA
172829 AC * 10 18/20 AC AC AC AC AC AC AC AC AG AG
174018 CA * 11 20/22 CA CA CA CA CA CA CA CA TG CA CA
180626 GT * 11 20/22 GT AT GC GT GT GT GT GT GT GT GT
180661 GT * 10 18/20 GT GC CT GT GT GT GT GT GT GT
187060 TA * 16 30/32 TA TA TA TA TA TG TA TA TA TA TA TA TA TA TA TT
194633 TA * 10 18/20 TA AA AA TA TA TA TA TA TA TA
198365 GT * 17 31/34 GT AT CT GT GT GT GT GT GT GT GT GT GT GT GT GG GT
202081 TA * 12 22/24 TA TT TA TA TA TA TA TA TA TA TA CA
203298 TA * 18 33/36 TA CA TA TA TA TA TA TA TA TG TA TA TA TA TA TA TA TG
207086 TC * 15 27/30 TC AC TC TC TC TC TC TC TC TC TC TC TC TC GA
207346 AG * 12 22/24 AG AG AG AG AG CG AG AG CG AG AG AG
207462 CT * 11 20/22 CT CG CT CT CG CT CT CT CT CT CT
207494 CT * 10 18/20 CT CT CT CC CT CT CG CT CT CT
215492 CA * 20 36/40 CA CA CA CG GA CA CA CA CA CA CA CA CA CA CA CG CA CA CA AA
223287 GT * 22 40/44 GT GT GT GT GT GT GT GC CT GT GT GT GT GT TT GT GT GT GT GT GT GC
229964 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG AT
239912 TA * 15 27/30 TA TA TA TA TA TA TA TA TA TT AA TA TA TA AA
245746 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG TG AT
247673 AT * 10 18/20 AT AT AT GT AT AT AT AT AT TT
251436 TC * 33 61/66 TC TC GC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TT TT TG TT
256875 CT * 11 20/22 CT CT CT CT CT CT CT CT CT TT GT
257475 CA * 16 30/32 CA CA CA CA CA AA CA CA CA CA CA CA CT CA CA CA
259839 TG * 12 22/24 TG TG TA GG TG TG TG TG TG TG TG TG
261346 GT * 10 18/20 GT GT GT GT GT GT GT AG GT GT
269218 AC * 13 25/26 AC AC AC AC AC AC AC AC AC AC AC AC TC
270883 AC * 13 24/26 AC AG AA AC AC AC AC AC AC AC AC AC AC
274914 AT * 13 24/26 AT AT AT AC AT AT AT AT AT AT AT AT CT
277845 AT * 21 38/42 AT AT AT AT AG AT AT GT AT AT AT AT AT AT AT AT AC AT AT AT GT
280039 TA * 13 24/26 TA TA TA TA TA TA CA TA TA AA TA TA TA
281870 TC * 12 22/24 TC TC TC TC TC TC TC TC TC TT GC TC
298530 TA * 10 18/20 TA TA TA TA TA TA CA TA TA TC
305901 CT * 12 22/24 CT TG CT CT CT CT CT CT CT CT CT CT
306201 CT * 13 24/26 CT CT GT CT GT CT CT CT CT CT CT CT CT
306386 CA * 10 18/20 CA CA CA CA CA AA CA CA CA TA
308097 CA * 11 20/22 CA AA AA CA CA CA CA CA CA CA CA
308384 CA * 18 33/36 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CT CA GT
309415 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CC AA CA
310408 CA * 10 18/20 CA CA CA CA CA CA TA GA CA CA
310524 AT * 10 18/20 AT AT AT AT AT AT AT AG AC AT
310734 TA * 10 18/20 TA TA TA CA CA TA TA TA TA TA
310954 TA * 12 22/24 TA TA TA TA CA TA CA TA TA TA TA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 313965
Total number of repeats detected.............. 91
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 15 9 4 1 5 10 8 8 1 6 0 0
15 to 19 1 3 0 0 1 3 4 3 1 1 0 0
20 to 24 2 0 0 0 0 2 1 1 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 1 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 18 12 4 1 6 15 13 12 3 7 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
18 AT + 12 TA = 30
4 AG + 1 GA + 7 CT + 3 TC = 15
12 GT + 13 TG + 15 CA + 6 AC = 46
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7290927|gb|AE003444.1|AE003444 Drosophila melanogaster genomic scaffold 142000013386054 section 28 of 35, complete sequence
Position Repeat Coverage Repeat
5872 AG * 11 21/22 AG AG AG AG AG AG AG AG AG AG CG
17351 AC * 12 22/24 AC AC AC AC AC AC AC AA AT AC AC AC
21969 TG * 10 18/20 TG TG TG TG TG TG TG AG TG TA
25357 AC * 10 18/20 AC AC AC AC AC AC AC AC CC AA
25737 AT * 10 18/20 AT AT AT AT AT AT AT AC AA AT
29748 TG * 11 20/22 TG TG TG TG TG TG TG TG AG TG TC
35316 TA * 10 18/20 TA TA TA TA CA TA TA TA TA TT
50856 AT * 12 23/24 AT AT AT AT AT AT AT AC AT AT AT AT
51599 AT * 12 23/24 AT AT AT AT AT AT AT AT AT GT AT AT
60097 TA * 16 29/32 TA TA TA TG TA CA TA TA TA TA TA TA TA TA TG TA
63555 CT * 10 18/20 CT CT CT CT CT CT CT CT CT TA
69196 AT * 12 22/24 AT AA AT AT AT AT AT AT AT AT AT AN
83774 AT * 12 22/24 AT AT AT AT AT AT GT AT AT AT AT AC
86662 TA * 10 18/20 TA TA TA TA TA CA TA TA TA TC
95157 CT * 18 33/36 CT CT AT CT CT CT CG CT CT CT CT CT CT CT CT CT GT CT
102809 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GT GT GT AA
104810 TG * 10 18/20 TG TG TG TG TG TG TG TG TT GG
106968 TG * 10 18/20 TG TG TG TG TG TG TG TG TG CT
108676 GT * 11 20/22 GT GT GT GT GT GT GT GT GT GC TT
109375 AT * 13 24/26 AT AT AT AT AT AT AG TT AT AT AT AT AT
116794 TA * 12 22/24 TA TA TA TA TA TA TA TA TA TG TT TA
118104 CA * 11 20/22 CA GA CA GA CA CA CA CA CA CA CA
118320 CT * 10 18/20 CT CC CA CT CT CT CT CT CT CT
123262 GT * 10 18/20 GT GT GT GA GT GT GT GA GT GT
124162 AT * 12 22/24 AT AT AT AA AT AT AT AT AT AT AT TT
126750 TG * 13 24/26 TG TG TG TG TG TG TG CT TG TG TG TG TG
128269 AT * 12 22/24 AT AT AC AT AT TT AT AT AT AT AT AT
133568 CT * 12 22/24 CT CT CT CT CT CT CT CT CT CT CT TA
153728 CA * 10 18/20 CA CT CC CA CA CA CA CA CA CA
160948 AT * 12 22/24 AT AT AT AC AT AT AT AT AT GT AT AT
164327 TA * 13 24/26 TA TA TA TA TA TG TA TA TA TG TA TA TA
175225 TA * 10 18/20 TA TG CA TA TA TA TA TA TA TA
176564 TG * 15 27/30 TG TG TG TG CG TG TG TG TG TG TG TG CG TG CG
182194 TA * 12 22/24 TA TT TA CA TA TA TA TA TA TA TA TA
182692 AC * 11 20/22 AC AC AC AC AC CC AC AC AC AC AA
203505 TA * 11 20/22 TA CA TA CA TA TA TA TA TA TA TA
206328 GT * 21 38/42 GT GT GA GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GG AG
206546 AC * 10 18/20 AC AC AC AC AC AC AC AC GC AA
210111 TA * 13 24/26 TA TA TA TA TA TA TA TA TC TA TA TT TA
211759 AT * 10 18/20 AT AT AT AT AT AA AT AT GT AT
214456 TG * 10 18/20 TG TG TG TG TG TG TG TG TG GT
214638 TA * 10 18/20 TA TT TA TT TA TA TA TA TA TA
215082 TA * 12 22/24 TA TA TT TA TA TA TA TA TA TA TA TT
215713 AT * 12 22/24 AT AC AT AT AT AT AT AT AT AT AT TT
224602 TG * 11 20/22 TG TG CC TG TG TG TG TG TG TG TG
224884 CT * 15 27/30 CT CT CT CT CT CT CT CT CT CT CT AT CG CT CA
234098 AT * 10 18/20 AT AT AT AT AA AG AT AT AT AT
234119 TA * 11 20/22 TA TA TT TA TA TA TA TA TA AA TA
234851 TC * 13 24/26 TC GC TC TC TC TC TC TC TC TC AC TC TC
241546 TA * 11 20/22 TA TA TA TA TG TA TA CA TA TA TA
247798 AT * 10 19/20 AT AA AT AT AT AT AT AT AT AT
252648 TG * 11 20/22 TG GG TG TG TG TG TG TG TG TG GG
253502 AT * 10 18/20 AT AT AA AT AT AT AC AT AT AT
255936 CA * 11 20/22 CA AA CA CA CA CA CA CA CT CA CA
258526 AG * 17 31/34 AG CG AG AG AG AG AA AG AG AG AG AG AG AG AG AG CG
275349 AT * 10 18/20 AT GT AT AT AT AA AT AT AT AT
278502 CA * 12 22/24 CA CA CA CA CA CA CA CA CA TA CG CA
279886 TG * 18 33/36 TG CG TG TG TG TG TG TG TG TG TG TG TG TG TG TA AG TG
288558 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG GA
291930 AG * 12 23/24 AG AG AG AG AG AG AG AG AG AG AG AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 300710
Total number of repeats detected.............. 60
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 15 12 2 0 4 4 9 3 1 3 0 0
15 to 19 0 1 1 0 0 0 2 0 0 2 0 0
20 to 24 0 0 0 0 0 0 0 1 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 15 13 3 0 4 4 11 4 1 5 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
15 AT + 13 TA = 28
3 AG + 0 GA + 5 CT + 1 TC = 9
4 GT + 11 TG + 4 CA + 4 AC = 23
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7290880|gb|AE003443.1|AE003443 Drosophila melanogaster genomic scaffold 142000013386054 section 27 of 35, complete sequence
Position Repeat Coverage Repeat
4086 TG * 10 18/20 TG TG TG TT GG TG TG TG TG TG
4461 GT * 11 20/22 GT GT GT TT GT GT GT GT GT GT GG
52548 TA * 10 18/20 TA TA GA TA CA TA TA TA TA TA
55899 AT * 11 20/22 AT AT AG AT AT AT AT AT AT GT AT
58444 TC * 11 21/22 TC TC TC TC TC TC TC TC TC TG TC
65032 AC * 10 18/20 AC AC AC AC AC AC GC AC AC GC
67464 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GC GT AT
67724 AT * 11 20/22 AT AT AT AT AT AC AT AT AT TT AT
69190 AG * 11 21/22 AG AG AT AG AG AG AG AG AG AG AG
72477 AC * 11 20/22 AC AC AA AC GC AC AC AC AC AC AC
74193 TG * 15 27/30 TG CG TG TG TG TG TG TG TG TG TG TG TG TG CT
74641 TG * 10 18/20 TG TG TG TG TG TG TG TA TG TT
75378 TA * 12 22/24 TA TA TA TA TA TA TA TA TA AA TA TT
76418 AT * 12 23/24 AT AT AT AT AT AT AC AT AT AT AT AT
78439 AC * 11 20/22 AC GA AC AC AC AC AC AC AC AC AC
83065 GA * 10 18/20 GA AA GA GA GA GA GA GA GA GT
89694 CA * 13 24/26 CA CA AA CA CA CA CA CA CA CA CA GA CA
94812 TA * 13 24/26 TA TA TA TA TA TA TA TA CA TA TA TA TT
95224 CA * 13 24/26 CA GA CA CA CC CA CA CA CA CA CA CA CA
98185 CA * 10 18/20 CA CA CA CA CA TA CA CA CA CT
101056 CA * 12 22/24 CA GG CA CA CA CA CA CA CA CA CA CA
101200 CT * 12 22/24 CT CT CT CT CT CT CT CT CT TG CT CT
105911 TA * 10 18/20 TA TA TA TA TA TA AA TA TA TT
111395 TA * 10 18/20 TA TA TA TA TA CA TA TA TA TG
113238 CT * 13 24/26 CT CT CT TT CT CT CT CT CT CT CT CT AT
114192 CA * 17 31/34 CA CA CA AA CA CG CA CA CA CA CA CA CA CA CA CC CA
114832 CA * 19 35/38 CA TA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CT CA TA
121625 AT * 10 18/20 AT AT AT AT AC AT AT AT AT GT
124766 AC * 10 19/20 AC AC CC AC AC AC AC AC AC AC
125694 TA * 13 24/26 TA TA TA TA AA TA TA TA TA TA TT TA TA
141848 CA * 12 22/24 CA CA CA CA CA CA CA CA CA TG CA CA
162538 CT * 11 20/22 CT CT CT CT CT CT CT CT CA CT CA
163236 CT * 12 22/24 CT CT CT CT CT CT CT CT CT CC CT CG
164787 AT * 10 18/20 AT AT CT TT AT AT AT AT AT AT
168843 CA * 12 23/24 CA CA CA CA CA CA CA CA CA CA CA CG
171691 TC * 12 22/24 TC TC CC TC TA TC TC TC TC TC TC TC
176201 TG * 11 21/22 TG TG AG TG TG TG TG TG TG TG TG
176299 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GT GG GT GG
177541 TG * 19 35/38 TG TG TG TG TG TG TG CG TG TG TG TG TG TG AG TG TG AG TG
186144 CA * 10 18/20 CA AA CA CA CA CA CA CA CA CG
188481 GT * 10 18/20 GT GT GT GT AT GT TT GT GT GT
189765 TA * 11 20/22 TA TA AA TA AA TA TA TA TA TA TA
191529 TG * 21 38/42 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TC TG TA GG TG AG
197148 TG * 18 33/36 TG TG TG TG TG TG TT TG TG TG TT TG TG TG TG TG TG AG
199010 AG * 10 18/20 AG AG AG AT AG AG TG AG AG AG
200901 AC * 12 22/24 AC GC AC AC AC AC AC AC AC AA AC AC
202571 TG * 11 20/22 TG TG TG TG TG TG TG CG TG TG TT
202655 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AC TA
202799 TG * 10 18/20 TG TG GG TG TG TG TG AG TG TG
203606 CA * 16 30/32 CA CA CA CA AA CA CA CA AA CA CA CA CA CA CA CA
207810 GT * 16 29/32 GT GT GT GT GT GT TT TT GT GT GT GT GT GT GT GC
208085 TA * 14 26/28 TA TA CA TA TA TA CA TA TA TA TA TA TA TA
208622 AT * 10 18/20 AT AA AT AT AA AT AT AT AT AT
209724 CA * 11 20/22 CA CA CA CA CA CA CA CA CA TA CT
213488 TG * 12 23/24 TG TG TG TG TG TG TG AG TG TG TG TG
213635 TC * 11 20/22 TC CC TC TC TC TC TC TC TC TC TT
213658 CT * 11 20/22 CT CC CT CC CT CT CT CT CT CT CT
214268 TA * 10 18/20 TA TA TA TA TG TA TA TA TG TA
216221 TA * 11 20/22 TA TA TA TA TA TA TA TA AA TG TA
216476 AT * 12 22/24 AT AT AT AT AT AT AT AT AT GT TT AT
224440 AT * 10 18/20 AT AT GT AC AT AT AT AT AT AT
224892 AC * 12 23/24 AC AA AC AC AC AC AC AC AC AC AC AC
229919 CA * 12 22/24 CA CA CT CA CA CA CA CA CA CA CC CA
229970 AC * 11 20/22 AC GC AC AC AG AC AC AC AC AC AC
230309 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TA AG TG
230631 TG * 15 28/30 TG TG TG TG TG TG TG TG TG TG TG CG TG CG TG
233961 TG * 10 18/20 TG TA TG GG TG TG TG TG TG TG
234139 CA * 11 20/22 CA CC CG CA CA CA CA CA CA CA CA
234168 AC * 12 22/24 AC CC AC AC AC AC AC AC AC AC AC TC
235832 TG * 11 21/22 TG TT TG TG TG TG TG TG TG TG TG
235986 CA * 10 18/20 CA TA TA CA CA CA CA CA CA CA
240697 CA * 11 20/22 CA CA CA CA CA CA TA CA CA CG CA
244143 TG * 12 22/24 TG TA TG TG TG TG TG TG TG CG TG TG
245367 TG * 11 21/22 TG TG TG TG TG TG TG TG TG TG TC
247136 GT * 13 24/26 GT GT GT GT GT GT GT GT GC GA GT GT GT
247774 CA * 12 23/24 CA CA CA CA CA CA CA CA CA CA CG CA
248900 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TA AG
251454 AC * 11 20/22 AC AC CA AC AC AC AC AC AC AC AC
252430 CA * 11 20/22 CA CA CA CG CA CA CA CG CA CA CA
253336 AC * 13 24/26 AC AC AC GC AC AC AC AC AC AC AC AC AG
258220 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CG CA AA
260986 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC AC AT GC
263703 AC * 17 31/34 AC AC AC AC AC AC AA AC AC AC AC TC AC AC TC AC AC
265757 CA * 17 31/34 CA CA CA CA CA CG CA CA CA CA CA CA CA CA CC CA GA
280695 CA * 13 24/26 CA CT CA CA CG CA CA CA CA CA CA CA CA
282037 TA * 12 22/24 TA TA TA CA TA TA TG TA TA TA TA TA
282355 CA * 10 18/20 CA CA CA CA CA CG AA CA CA CA
285385 AT * 13 24/26 AT AT AT TT AT GT AT AT AT AT AT AT AT
286164 TG * 12 22/24 TG TT TG TG TG TG TG TG TG TG TG CG
290392 TA * 11 20/22 TA TA CA TA TA TA TA TT TA TA TA
296614 AT * 15 27/30 AT AT AT GT AT AT AT AT AT AT AT GT AT AT CT
-----------------------------------------------------------------------------------------
Total sequence length......................... 302357
Total number of repeats detected.............. 91
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 9 12 2 1 12 17 13 5 3 5 0 0
15 to 19 1 0 0 0 1 4 4 1 0 0 0 0
20 to 24 0 0 0 0 0 0 1 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 10 12 2 1 13 21 18 6 3 5 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
10 AT + 12 TA = 22
2 AG + 1 GA + 5 CT + 3 TC = 11
6 GT + 18 TG + 21 CA + 13 AC = 58
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7290831|gb|AE003442.1|AE003442 Drosophila melanogaster genomic scaffold 142000013386054 section 26 of 35, complete sequence
Position Repeat Coverage Repeat
1990 CA * 15 27/30 CA CA CA CA CA GA CA CA AA CA CA CA CA CA CG
2140 TG * 14 26/28 TG TG TA AG TG TG TG TG TG TG TG TG TG TG
2221 AT * 13 24/26 AT AT AT AT AT AT AT AT GT AT AT AT AA
6115 TG * 11 20/22 TG AC TG TG TG TG TG TG TG TG TG
24797 TG * 12 22/24 TG TG CG TG TG TG TG TT TG TG TG TG
27369 CA * 10 18/20 CA CA CA CA CA CA CA CA TT CA
32056 AC * 10 19/20 AC AC AC AC AC AT AC AC AC AC
37973 AT * 12 22/24 AT CT AT AT AT AT AT AT AT AT AT TT
38158 AT * 11 20/22 AT AC AT AT AT AT AT AT AT AT AC
41129 AC * 16 29/32 AC AC GC AC AC AC AC AC AC AC AC AC TC AC TC AC
45909 GT * 10 19/20 GT GT GT GT AT GT GT GT GT GT
46283 TA * 11 20/22 TA TG TA TA TA CA TA TA TA TA TA
46541 AT * 11 20/22 AT AT AC AT AT AT AT AT AT AA AT
47314 AT * 17 32/34 AT AT AT AT AT AT AT AT GT AC AT AT AT AT AT AT AT
47510 AC * 10 18/20 AC AC AC AC GC GC AC AC AC AC
55376 CA * 13 24/26 CA TT CA CA CA CA CA CA CA CA CA CA CA
58768 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TG TG AG TG GG GG
66086 TG * 12 23/24 TG TG TG TG TT TG TG TG TG TG TG TG
75389 CA * 11 20/22 CA CA GA CA CA CA CA CA CA CA CC
115229 CA * 11 20/22 CA CA CA CA CA CG CA CA CA CA GA
118117 GT * 10 18/20 GT GT GA GT GT GT GT GT TT GT
120636 TG * 10 18/20 TG TG TG TG TG CG TG CG TG TG
120952 AT * 11 20/22 AT AT AT AT AA AT AT AT AT AT CT
125486 CA * 10 18/20 CA CA CA CA CA CA CG CA CT CA
132735 CA * 10 18/20 CA CA CG CA CA CA TA CA CA CA
139360 TG * 11 20/22 TG TT TG TG TC TG TG TG TG TG TG
139503 AC * 10 18/20 AC AC AC AC AC AC AC AC AA AA
148032 TA * 10 18/20 TA TA TA CA TA CA TA TA TA TA
153891 AG * 11 20/22 AG AT AG AG AG AG GG AG AG AG AG
155246 TG * 13 25/26 TG TG TG TG TG TG TG TG TG TG TG TG CG
171430 AT * 11 20/22 AT AT AT AT AT AT AT AT AT CG AT
173635 CA * 13 24/26 CA CA AA CA CA CA CA CA CA CA CA CA GA
173723 CA * 13 24/26 CA CA CA CA CA CT CA CA CA CA CA CG CA
175510 CA * 13 24/26 CA CA CA CA CA CG CA CA CA CA TA CA CA
180927 CA * 13 24/26 CA AA CA CA CA CA CA CA CA CA CA CT CA
192684 CA * 10 18/20 CA GC CA CA CA CA CA CA CA CA
199585 TG * 10 18/20 TG TG TG TG TG TG TG TG CG TT
205236 TG * 11 20/22 TG AG TA TG TG TG TG TG TG TG TG
206138 CA * 18 33/36 CA CA CA CA CA CA CA CA CA CA TA CA CA CA CA CA GG CA
207489 AC * 20 36/40 AC AC AC AG AC AC AC AC AC AC AC AC AC AC AC AC AC AG AT GC
220743 CA * 17 31/34 CA CA CC CA CA CC CA CA CA CA CA CA CA CA CA TA CA
221159 TG * 18 33/36 TG TA TG TG TG CG TG TG TG TG TG TG TG TG TG TG TG TA
221420 CA * 16 29/32 CA CA CG CA CA CA CA CA CA CA CA CA CA CA CA AG
221460 CA * 10 18/20 CA CA GA AA CA CA CA CA CA CA
223256 AT * 10 18/20 AT AT AT AT AT AT AT AT AT TC
223515 CA * 10 18/20 CA CA CA CA CA TA CA CG CA CA
233488 AT * 13 25/26 AT AT AT AT AT AT AT AT AT AT AT AT GT
233797 TA * 10 18/20 TA TA TA TA TA TA TA TA TG TT
234673 GT * 13 24/26 GT GT GG GT GT GT GT GT GT GC GT GT GT
235033 GT * 13 25/26 GT GT GT GT GT GT GT GT GT GT GT GT AT
241571 GA * 10 18/20 GA CA CA GA GA GA GA GA GA GA
243457 TA * 21 38/42 TA GA TA TA TA TA TA TA TA TA TC TA TA TA TA TA TA CA TA CA TA
244180 GA * 12 23/24 GA GC GA GA GA GA GA GA GA GA GA GA
250289 CA * 13 24/26 CA CC TA CA CA CA CA CA CA CA CA CA CA
252004 AC * 10 18/20 AC GA AC AC AC AC AC AC AC AC
252701 GA * 10 18/20 GA GA GA GG GA GA GA GA GC GA
253713 AG * 11 20/22 AG GG AG AG AG AG AG TG AG AG AG
255384 AC * 10 19/20 AC AC AC AC AC GC AC AC AC AC
258172 GT * 10 18/20 GT GT GT GT GT GT GT TT GT GA
265334 TG * 17 31/34 TG CG TG TG TG TG TG TG TG TG TG TG TG TG TA TG TA
275389 AT * 10 18/20 AT AT AT GT AT AT AT AT AT AC
275460 TC * 10 18/20 TC CC TC TC TC TC TC GC TC TC
276238 AT * 15 27/30 AT GT AT AT AT AT AT CT AT AT AT AT AT AT AC
276401 AC * 18 34/36 AC TC AC AC AC AC AC AC TC AC AC AC AC AC AC AC AC AC
281747 CA * 10 18/20 CA CA CA CA CA CA GA CA CA AA
281777 AC * 10 18/20 AC AC AC AC AC AC AC TC AC AG
282402 AT * 10 18/20 AT AT AT AT AT AT AT AT AT NN
282471 TG * 10 18/20 TG AG TG TG TG TG TG TG TG TC
282747 AG * 13 25/26 AG AG AG AG AG AG AG AG AG AG AG AG AA
283889 TA * 19 35/38 TA TG TA TA TA TA TA TA TA GA TA TA TA TA TA TA TA TA TT
285798 AG * 12 22/24 AG AG AG AG AG AG AG AG AG AG CC AG
286145 TG * 16 29/32 TG TT TC TG TG TG TG TG TG TG TG TG TG TG TG CG
288462 CA * 10 18/20 CA CA CA CA CA CA CA CT CG CA
295206 TC * 12 22/24 TC CC TC TC TC TC TC TC TC TC TA TC
296032 TG * 14 26/28 TG TG TG TG TG TG TG TG TG GA TG TG TG TG
297547 TG * 13 24/26 TG CG TG TG TA TG TG TG TG TG TG TG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 306267
Total number of repeats detected.............. 76
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 10 3 4 3 6 16 12 5 2 0 0 0
15 to 19 2 1 0 0 2 4 4 0 0 0 0 0
20 to 24 0 1 0 0 1 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 12 5 4 3 9 20 16 5 2 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
12 AT + 5 TA = 17
4 AG + 3 GA + 0 CT + 2 TC = 9
5 GT + 16 TG + 20 CA + 9 AC = 50
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7290819|gb|AE003441.1|AE003441 Drosophila melanogaster genomic scaffold 142000013386054 section 25 of 35, complete sequence
Position Repeat Coverage Repeat
4933 AT * 13 24/26 AT AC AT AT GT AT AT AT AT AT AT AT AT
23957 AG * 20 36/40 AG AG AA AG AG AG AG AG AG AG AG AG AG AG AG AA AG AC AG CG
31000 GA * 11 20/22 GA GA GA GA GA GC GA GA GA GA GC
31763 AT * 10 18/20 AT AT AA AT AA AT AT AT AT AT
48800 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TG TG TG TT TT TA
59644 AG * 15 28/30 AG AG AG AG AG AG AG AG AG AG AA AG AG AG AA
75872 TA * 11 20/22 TA CA TA TA TA TG TA TA TA TA TA
83463 GT * 12 22/24 GT GT GT GT GT GT GT GT AT GT GT GG
101256 TG * 10 18/20 TG TG TG CG TG TG TG TG AG TG
104824 TA * 10 18/20 TA AA TA TA TA TA TA TG TA TA
112783 AC * 10 18/20 AC AC AC AG GC AC AC AC AC AC
113350 CT * 10 18/20 CT TT CT CA CT CT CT CT CT CT
114562 TG * 11 20/22 TG TG TG TG TG TG TG TT TA TG TG
114665 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AC AA AT
115412 GA * 11 20/22 GA GA GA GA GC GA GA GA GA GA GG
118163 TA * 10 18/20 TA TA TA TA TA TA TA TA TT TG
119058 TG * 13 25/26 TG TG TG TG TG TG TG TG TG TG TG TT TG
122807 CT * 10 19/20 CT GT CT CT CT CT CT CT CT CT
123025 AT * 10 18/20 AT AT AC AT AT AT GT AT AT AT
127411 TG * 10 18/20 TG CA TG TG TG TG TG TG TG TG
145626 AC * 11 20/22 AC AA AT AC AC AC AC AC AC AC AC
146105 CA * 18 33/36 CA CG CA CA CA CA CA CA TA CA CA CA CA CA CA CA CA CG
147774 TA * 14 26/28 TA TA TA TA TA TA TA TT TA TA CA TA TA TA
152508 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT GT TG
153280 CA * 13 24/26 CA CA CA CT CA CA CA CA CA CA CA CA CC
154176 AT * 13 24/26 AT AT TT AT AT AT AC AT AT AT AT AT AT
169525 TG * 10 19/20 TG TG TG TG TG TG TG TG TG TA
169545 AT * 11 20/22 AT CT AT AT AT AT AT AT AT AT TT
170663 TA * 12 22/24 TA TA TG TA TA TG TA TA TA TA TA TA
176644 CT * 26 47/52 CT GT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT TT CT CT GT TC
178405 CT * 12 22/24 CT CT CC CT CT CT TT CT CT CT CT CT
179155 AT * 10 18/20 AT AT AT AT AT GT AT AT GT AT
180836 TG * 10 19/20 TG TG TC TG TG TG TG TG TG TG
182561 CT * 12 23/24 CT CT AT CT CT CT CT CT CT CT CT CT
188497 AG * 12 22/24 AG AG CG AG AG AG AG AG AG GG AG AG
189354 AC * 11 21/22 AC AC AC AC TC AC AC AC AC AC AC
190232 AC * 13 24/26 AC AC AC AA AC AC AC AC AC AC AC AT AC
195247 CT * 10 18/20 CT CT CC CG CT CT CT CT CT CT
225216 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AT CC
228810 TG * 12 22/24 TG TG TG TG TG TG TG CG TG TG TG CG
229089 GT * 11 20/22 GT GT GT GC AT GT GT GT GT GT GT
235014 AT * 11 20/22 AT AT AC AT AT AT AT AT AT AT TT
240504 AG * 12 22/24 AG AG AG AG AG AG AG AG AG AG CG AT
241635 AT * 10 18/20 AT AA AT AT AT AT AT GT AT AT
243374 TC * 11 20/22 TC TC TC TC TC TG TC TC TC CC TC
243398 CA * 11 20/22 CA CA CA CA CA CA CT CA CA CA TA
244778 AC * 11 20/22 AC AC AC AT AC AC AC AC TC AC AC
246640 GT * 10 18/20 GT GT GT GT GG GT AT GT GT GT
255238 GT * 10 18/20 GT GT GC GT CT GT GT GT GT GT
255259 TG * 12 22/24 TG TG TG TG TG TG TG TG AG TG TG CG
255780 AG * 11 20/22 AG AG AG AG AG AG AA GG AG AG AG
256114 TG * 12 22/24 TG CG AG TG TG TG TG TG TG TG TG TG
256245 CA * 10 18/20 CA CA CA CA CA AA CA CA CA CG
258349 TA * 10 18/20 TA TA GA TA TA TA AA TA TA TA
260390 TG * 16 29/32 TG CG TG TG TG TG TG TG TG TG TG TG TG TG AG GG
261224 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG GC
266617 TA * 10 18/20 TA TA TA TA TA TA TA TA TA AT
266941 TG * 10 19/20 TG GG TG TG TG TG TG TG TG TG
270516 CA * 23 42/46 CA CA CA CA AA CA CA CA CA CA CA CA CA CA CA CA CA CA CA GC CA CA AA
280512 TG * 11 20/22 TG TG AG AG TG TG TG TG TG TG TG
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Total sequence length......................... 285272
Total number of repeats detected.............. 60
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Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
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Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 8 7 3 2 7 3 12 5 1 5 0 0
15 to 19 0 0 1 0 0 1 2 0 0 0 0 0
20 to 24 0 0 1 0 0 1 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 1 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
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Total 8 7 5 2 7 5 14 5 1 6 0 0
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Frequency distribution of different di-nucleotide repeat classes
8 AT + 7 TA = 15
5 AG + 2 GA + 6 CT + 1 TC = 14
5 GT + 14 TG + 5 CA + 7 AC = 31
0 GC + 0 CG = 0
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Genomic Sequence:..
gi|7290801|gb|AE003440.1|AE003440 Drosophila melanogaster genomic scaffold 142000013386054 section 24 of 35, complete sequence
Position Repeat Coverage Repeat
13548 TG * 10 18/20 TG TG TG TG TG TG TG TG TG GT
24353 CA * 11 20/22 CA CA TA CG CA CA CA CA CA CA CA
24669 AC * 11 21/22 AC AC TC AC AC AC AC AC AC AC AC
24700 CT * 10 18/20 CT CT CT CT CC CT CT CT CG CT
29587 AT * 11 20/22 AT TT GT AT AT AT AT AT AT AT AT
37936 TA * 11 20/22 TA TA TC TA TA TA TA TA TA TA TC
44289 TG * 10 18/20 TG TG TG TG TG TG TG TT TG TC
51301 TG * 10 18/20 TG TG TG TG CG TG TG TC TG TG
51323 TG * 11 20/22 TG TG TG TG TG TG TG TG AG AG TG
53652 GA * 20 36/40 GA GA AA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GT TC
54753 GA * 10 18/20 GA GA GA GG GA GA GA GG GA GA
71025 CA * 12 22/24 CA CA AA CA CA CA CA CA CA CA CC CA
73331 AT * 11 21/22 AT AT CT AT AT AT AT AT AT AT AT
73355 AT * 10 18/20 AT AT AT AT AT AT AT AT AT GG
74302 AC * 10 18/20 AC AC AC AC AC GG AC AC AC AC
74571 TG * 11 21/22 TG TA TG TG TG TG TG TG TG TG TG
75580 CA * 25 45/50 CA CG CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA TA CA CG CC CC
76995 CA * 11 20/22 CA CA CA CC CA CA CA CA CA CA CT
77710 TG * 20 36/40 TG TG TT TG TG TA TG TG TG TG TG TG TG TG TG TG TG TG TG GA
77900 AC * 10 18/20 AC AC AA AC AC AC AC AC AC AG
85166 GT * 12 22/24 GT GC GT GT GT GT GT GT GT GT GG GT
85555 AC * 10 18/20 AC AC AC AC AC AC AT AC AC AT
89742 AC * 11 20/22 AC AA AC AC AC AC AC AC AC AC AT
92209 GA * 13 24/26 GA CA GA GA GA GA GA GA GA GA GA GA GC
94228 AC * 16 29/32 AC AC AC AC AC AC AC AC AC AC AC AC AG AC AA AA
98360 GT * 10 18/20 GT GT GT GT GT TT GT GT GC GT
99349 AC * 12 22/24 AC AC AC AC TA AC AC AC AC AC AC AC
99870 TG * 15 27/30 TG GG TG TG TG TG TG TG TG TG TG TG TG GG CG
100159 GT * 16 29/32 GT GC GT GC GT GT GT GT GT GT GT GT GT GT GT GC
104472 CA * 16 30/32 CA CA CA CA CA GA CA CA CA CA CA CA CA CA CA CG
107739 AT * 10 18/20 AT AT AT AT AT AT AC AT AC AT
119660 TG * 11 20/22 TG TA TG TG TG TG TG TG TG TG TT
122080 CA * 10 18/20 CA CA CA CA CA CA C