Di-Nucleotide Repeats in Genomic Sequences
Di-Nucleotide Repeats in
Drosophila melanogaster Chromosome-X Genomic Scaffolds
Genomic Sequence:..
gi|7289277|gb|AE002611.1|AE002611 Drosophila melanogaster genomic scaffold 142000013385548, complete sequence
Position Repeat Coverage Repeat
2138 AT * 16 29/32 AT AT AT AT AT AT AT AT GT AT AT TT AT AT AT GT
3586 GT * 13 25/26 GT GT GT GT GT GT GT GT GT GA GT GT GT
9890 AT * 12 22/24 AT AT AT AT AT AT AT AA AT AG AT AT
21811 TG * 13 24/26 TG TC TG TG TG TG TG TG TG TG TG TA TG
31388 GT * 12 22/24 GT GT GT GC GC GT GT GT GT GT GT GT
31538 GT * 16 29/32 GT GT TG GT GT GT GT GT GT GT GT GT GT GT GT GC
38521 AG * 10 18/20 AG AG AG AG AG AG AG AG GG CG
47182 CA * 12 22/24 CA CC CA CT CA CA CA CA CA CA CA CA
47211 AC * 10 18/20 AC TC AA AC AC AC AC AC AC AC
54610 CA * 18 33/36 CA TA CG CA CA CA CA CA CA CA CA CA CA CA CC CA CA CA
55927 AC * 16 30/32 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC TG
57178 TG * 13 25/26 TG TG TG TG TG TG TG TG TG TG TG AG TG
59606 GT * 11 21/22 GT GT GT GT GT GT GT GT GT GT GG
59855 GT * 12 22/24 GT GT GT GT GT GT GT GT CT GT GT GC
59879 TG * 21 38/42 TG TG AG TG TT TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG GA
61164 TA * 10 18/20 TA TA TA TA TA CA TA TA TA TG
64199 GT * 16 29/32 GT GT GT GT GT GT GT GT GT GT GT TA GT GT GC GT
65367 CA * 13 25/26 CA CA CA CA CA CA CA CA CA CA CA TA CA
66167 TG * 11 20/22 TG TG TG TA CG TG TG TG TG TG TG
74223 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG CT
75296 AT * 10 18/20 AT AT AT AT AT AT GT AT AT AG
94738 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG TA TT
96480 AT * 12 22/24 AT AT AT AT AC AT AC AT AT AT AT AT
97453 GT * 13 24/26 GT GT GT CT GT GT GT GT GT GT GT GT GC
99198 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GC GT GA GT
106695 TG * 23 42/46 TG TG AG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TT CT
109489 AC * 10 18/20 AC AC AT AC AC AC AC AC AC GC
110370 TG * 13 25/26 TG TG TG TG TG CG TG TG TG TG TG TG TG
114696 GT * 17 31/34 GT GT GT GT GT GT GT GT GT GT GT GT GT GC TT GT GC
120682 TG * 13 24/26 TG CA TG TG TG TG TG TG TG TG TG TG TG
120763 GT * 11 20/22 GT GT GT GT GT GT TT GT GT AT GT
126024 AC * 14 26/28 AC AC AC AC GC AC AC AC AC AC AC AC AC AG
126404 TG * 18 33/36 TG TG TG TA TG TT TG TG TG TG TG TG TG TG TG TG TG TT
130353 GT * 14 26/28 GT GT GC AT GT GT GT GT GT GT GT GT GT GT
140389 AC * 16 29/32 AC AC TA AC AC AC AC AC AC AC AC AC AC AC AC AT
148030 TG * 10 18/20 TG TA TC TG TG TG TG TG TG TG
148053 GT * 10 18/20 GT GT GT GG GT GT GT GG GT GT
148692 CA * 11 20/22 CA CA CA CA CA CA CA CA CA AG CA
151261 CA * 15 28/30 CA CA CC CA CA CA CA CA CA CA CA CA CA CA AA
151728 TC * 10 18/20 TC TC TC TC TC TC TC TC TG CC
155052 CA * 11 21/22 CA CA CA CA CA CA CA CA CA AA CA
155498 TA * 12 22/24 TA TA TA TA CA TA TA TA TT TA TA TA
167119 GT * 13 25/26 GT GT GT GT GT GT GT GT GT GT GT GT GC
176216 AT * 12 22/24 AT AT AT AT AT AT AT AT GT AT AT GT
189814 AT * 11 20/22 AT AT AT GT AT AT AT AT GT AT AT
198051 AT * 10 18/20 AT AT AT AC AT CT AT AT AT AT
198073 AT * 10 18/20 AT AT AT AT AT AC AT TT AT AT
199274 TA * 10 18/20 TA TG TA TA TA TA TT TA TA TA
201409 CT * 11 20/22 CT TA CT CT CT CT CT CT CT CT CT
201942 CA * 10 18/20 CA CG CA CG CA CA CA CA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 216949
Total number of repeats detected.............. 50
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 7 3 1 0 3 5 8 10 1 1 0 0
15 to 19 1 0 0 0 2 2 1 3 0 0 0 0
20 to 24 0 0 0 0 0 0 2 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 8 3 1 0 5 7 11 13 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
8 AT + 3 TA = 11
1 AG + 0 GA + 1 CT + 1 TC = 3
13 GT + 11 TG + 7 CA + 5 AC = 36
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7316095|gb|AE002620.1|AE002620 Drosophila melanogaster genomic scaffold 142000013386037, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295611|gb|AE003572.1|AE003572 Drosophila melanogaster genomic scaffold 142000013386037 section 5 of 5, complete sequence
Position Repeat Coverage Repeat
798 CA * 20 37/40 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CG TG
3408 AC * 14 26/28 AC AT AC AC AC AC AC AC AC AC AC AC AC AG
16228 AT * 28 51/56 AT GT AT AT AT AT AT AT AT AC AT AT AT AT AT AA AT AT AT AT AT AT AC AT AT AT AT GT
16970 TG * 10 18/20 TG TA TG TG TG TG TG TG TG TA
17106 TA * 10 18/20 TA GA TA TA TA TA TA CA TA TA
19544 GT * 10 19/20 GT CT GT GT GT GT GT GT GT GT
20678 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT GG GC
23273 TG * 16 29/32 TG TG TG GG TG TG GG TG TG TG TG TG TG TG TG CG
24822 TG * 12 22/24 TG TG TG TG TG TG TG TG TG CA TG TG
24924 TG * 15 27/30 TG TG TG TG TG TG TG CG TG TG TG TG TG TG CC
27844 AC * 18 33/36 AC AT CC AC AC AC AC AC AC AC AC AC AC AC AC AC AT AC
30699 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AC TT AC
30725 AC * 10 18/20 AC GC AC CC AC AC AC AC AC AC
32025 CA * 10 18/20 CA CA CA GA CT CA CA CA CA CA
49019 CA * 10 18/20 CA CA CA CA CA CA TG CA CA CA
55441 AT * 18 33/36 AT AT AT GT AT AT AT AT AT AT AA AT AT AT AT TT AT AT
58052 TG * 11 20/22 TG TG CG CG TG TG TG TG TG TG TG
58309 CA * 11 20/22 CA CG CA AA CA CA CA CA CA CA CA
74082 GA * 16 29/32 GA GT GA GA GG GA GA GA GA GA GA GA GA GA GA AA
74596 GA * 15 27/30 GA GA GA GC GA GA GA GA CA GA GA GA GA GA CA
74896 AG * 12 22/24 AG AG AG AG AG GG AG AG AG AT AG AG
-----------------------------------------------------------------------------------------
Total sequence length......................... 79498
Total number of repeats detected.............. 21
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 1 1 0 3 3 3 2 0 0 0 0
15 to 19 1 0 0 2 1 0 2 0 0 0 0 0
20 to 24 0 0 0 0 0 1 0 0 0 0 0 0
25 to 29 1 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 1 1 2 4 4 5 2 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 1 TA = 3
1 AG + 2 GA + 0 CT + 0 TC = 3
2 GT + 5 TG + 4 CA + 4 AC = 15
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295580|gb|AE003571.1|AE003571 Drosophila melanogaster genomic scaffold 142000013386037 section 4 of 5, complete sequence
Position Repeat Coverage Repeat
7455 AT * 12 22/24 AT AT AT AT AT AT AT TC AT AT AT AT
8581 TG * 10 19/20 TG TG TG TG TG TG TG TG TT TG
8635 TG * 11 20/22 TG TG CG TG TG TG TG TG TG GG TG
14071 AT * 11 20/22 AT AT AT AC AT AT AC AT AT AT AT
21396 GT * 13 24/26 GT GT GC GT GT GT GT GT GT GT GT GT AT
25361 AC * 10 18/20 AC AC AA GC AC AC AC AC AC AC
30347 TG * 10 18/20 TG TG TG TG TG TG TG TA TG TT
31321 AT * 18 34/36 AT AT AT AT AT AC AT AT AT AT TT AT AT AT AT AT AT AT
49481 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC GC AC GC
56863 AT * 11 20/22 AT TA AT AT AT AT AT AT AT AT AT
58861 AT * 13 24/26 AT AT AT AT AT AT AT AT GT AT AT AT AG
60185 GA * 11 20/22 GA GA GA GA GT GA GA GA AA GA GA
60557 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TC TC
63927 TA * 12 22/24 TA TA TA TA TA TA TA TA TA TA TC TT
70729 TG * 21 39/42 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG GG AA
71039 TG * 14 26/28 TG TG TG CG TG TG TG TG TG TG TG TG TC TG
74083 TG * 13 24/26 TG TG TG TG TG TG TG CG TG TG TT TG TG
74555 TG * 12 22/24 TG TG TC TG TG TG GG TG TG TG TG TG
81391 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AT AG
85119 TA * 15 27/30 TA TA TA TA TA TA TA AA TA TA TA AA TA TA TT
85482 CA * 19 35/38 CA CA CA CA CT CA CA CA CA CA CA CA CA CA CA CA CG CC CA
92338 TG * 11 20/22 TG CG TG TG TG TG TG TG TG TG GG
120731 TC * 10 18/20 TC TC CC TC TC CC TC TC TC TC
122071 TA * 10 18/20 TA AA TA TA TA TA TA TA TA CA
124055 GT * 28 51/56 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GC CT TT CT GC
132230 AT * 11 20/22 AT TT AT AT AT AT AT AT AT AT AA
140007 CT * 23 42/46 CT CT CT CT CT CT CT CT CT CT CA CT CT CT CT CT CT CT CC CT CA CT TT
154822 TA * 12 22/24 TA TA TA TA TG TA TA TA TA TA TA TT
164640 CA * 11 20/22 CA CA CA CA CA CA CA CG CA CG CA
164862 TA * 10 18/20 TA TT CA TA TA TA TA TA TA TA
169228 CA * 11 20/22 CA CT CG CA CA CA CA CA CA CA CA
173130 AC * 10 18/20 AC AC AC AT AC AC AC AC AC GC
176436 TA * 17 31/34 TA TA TA TA TA TA TA TA TA TG TA TA TA TA TA TG TG
176696 TC * 23 42/46 TC TC TC TC TC TC TC TC TC GC TC GC TC TC TC TC TC TC TC TT TC TC TG
177191 TA * 13 24/26 TA AA TA TA TA TG TA TA TA TA TA TA TA
184815 TG * 12 22/24 TG TG TG TG TC TG TG TG TG TG TG TA
186829 CA * 10 18/20 CA CA CA CA CA TA CA CA CA CT
209927 TC * 12 23/24 TC TC TC TC TC TC TC TC GC TC TC TC
209984 TC * 10 19/20 TC TC TC TC TC TC TC TC GC TC
230710 AT * 10 18/20 AT AT AT AT GT AT AT AT AT AC
231885 AT * 10 18/20 AT AT AT AA AT AT AC AT AT AT
234427 AC * 14 26/28 AC AA AC AC AC AC AC AC AC GC AC AC AC AC
234661 GT * 31 56/62 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GA GC GT GT GT GT CA GA GG
235856 AG * 14 26/28 AG AG AG AG AG AG AG AG AG AG AG AG AT GG
237195 GT * 16 29/32 GT GC TT GT GT GT GT GT GT GT GT GT GT GT GT GA
244483 CA * 12 22/24 CA CA CA CA CA CA AC CA CA CA CA CA
253577 GT * 11 20/22 GT GT GT GT GT GT GT GT GG GT GG
255977 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG CA
264138 CA * 11 21/22 CA CA CA CA CA CA CA CA CT CA CA
266407 CA * 12 22/24 CA CA CA CA CA CC CA CA CA CA CA CG
267654 CA * 12 23/24 CA CA CA CA CA CA CA CA CA CG CA CA
269174 TC * 26 47/52 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TG TC TG TC TC TA TA GC
288428 AC * 10 18/20 AC AC AC AC TC AC AG AC AC AC
290278 TA * 11 20/22 TA TC TA TA TA TA TA TA TA GA TA
294518 AG * 12 22/24 AG GC AG AG AG AG AG AG AG AG AG AG
296678 CT * 10 18/20 CT GT CT CT CT CT CT CT CT TT
296698 GT * 13 24/26 GT GT AT GT GT GT GT GT GT GT GT GG GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 302246
Total number of repeats detected.............. 57
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 7 6 2 1 6 7 10 3 3 1 0 0
15 to 19 1 2 0 0 0 1 0 1 0 0 0 0
20 to 24 0 0 0 0 0 0 1 0 1 1 0 0
25 to 29 0 0 0 0 0 0 0 1 1 0 0 0
30 to 34 0 0 0 0 0 0 0 1 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 8 8 2 1 6 8 11 6 5 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
8 AT + 8 TA = 16
2 AG + 1 GA + 2 CT + 5 TC = 10
6 GT + 11 TG + 8 CA + 6 AC = 31
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295563|gb|AE003570.1|AE003570 Drosophila melanogaster genomic scaffold 142000013386037 section 3 of 5, complete sequence
Position Repeat Coverage Repeat
1364 TG * 12 23/24 TG TG TG TG TG TG TG TG TG TG TG CG
3523 AT * 10 18/20 AT AT AT GC AT AT AT AT AT AT
3565 AT * 13 24/26 AT AT AT AT AT AT AT AT GT AT AT AC AT
5073 CT * 17 31/34 CT CT CT CT CT CT CT CT CT CC CT CT CT CT CT CA CA
5661 CA * 11 20/22 CA CA CT AA CA CA CA CA CA CA CA
31382 TG * 10 19/20 TG TG TG TG TG TG TG TG TG TT
38306 AT * 18 33/36 AT AT AT AT GT AT AT AT AT AT AT AT AT AC AT AT AC AT
46938 TG * 10 18/20 TG TG TG TG AG TA TG TG TG TG
56628 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CT CA CG CA
56694 AC * 13 24/26 AC AC AC AC AC CC AC AC AC GC AC AC AC
57537 CA * 22 41/44 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA GA GA CG CA
58082 TG * 12 23/24 TG AG TG TG TG TG TG TG TG TG TG TG
70397 CA * 10 18/20 CA CA CA CA CA CA CA CA CA GC
71824 TC * 20 36/40 TC TC TA TC TC TC TC TT TC TC TC TC TC TC TC TC TC TC TT TT
75041 CA * 13 24/26 CA CA CA CA CA CA CA CA CG CA CA CG CA
91252 CA * 11 20/22 CA CA CA CA CA CA CG CA CA CA AA
116751 AC * 10 18/20 AC AC AC AC AC AC AC AC AA AA
118059 GT * 13 24/26 GT GT GT GT GT GT GT GC GC GT GT GT GT
121018 AT * 11 20/22 AT AC AT AT AT AC AT AT AT AT AT
121072 AT * 23 42/46 AT AT AT AT AT AT AT AT AA AT AT AT AT AT AT AC AT AT AT AT AT AA AG
121850 AT * 10 18/20 AT AT AC AT AT AT CT AT AT AT
121872 AT * 10 18/20 AT AT AT AT AA AG AT AT AT AT
144506 AT * 13 24/26 AT AT AT AT AT AT AT AT AA AT AT AC AT
150508 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC AC AC GT
150550 AT * 10 18/20 AT AT AT AA AT AT AT AT AT AA
151754 CA * 10 18/20 CA CA CA CA CA CA CA CA CT TA
152388 TC * 21 38/42 TC TT GC TC TC TC TC TC TC TC TC TC TC TC TC TC TT TC TC TG TC
155777 TA * 10 18/20 TA TA TA GG TA TA TA TA TA TA
155802 AT * 10 19/20 AT AT AT AT AT AT AT AT AT AC
216206 CA * 18 33/36 CA AA CA CA CA CA CA CA CA CA CA CA CA CA CA TA CA CG
227457 TG * 14 26/28 TG TG TG TT TG TG TG TG TG TG TG TG TT TG
227586 GA * 12 22/24 GA GA GC GA GA AA GA GA GA GA GA GA
247051 TA * 12 22/24 TA TA TA TA TA CA TA TA TA TA TG TA
252739 TA * 10 18/20 TA TA TA TA TA TG TA TG TA TA
277839 AT * 10 18/20 AT AT AT AG AT AT AT AT AT AA
290955 AT * 10 18/20 AT AT AT AT AT AT AT AC GT AT
291241 CA * 16 29/32 CA GA CT CA CA CA CA CA CA CA CA CA CA CA CA AA
-----------------------------------------------------------------------------------------
Total sequence length......................... 299012
Total number of repeats detected.............. 37
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 10 3 0 1 3 6 5 1 0 0 0 0
15 to 19 1 0 0 0 0 2 0 0 0 1 0 0
20 to 24 1 0 0 0 0 1 0 0 2 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 12 3 0 1 3 9 5 1 2 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
12 AT + 3 TA = 15
0 AG + 1 GA + 1 CT + 2 TC = 4
1 GT + 5 TG + 9 CA + 3 AC = 18
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295529|gb|AE003569.1|AE003569 Drosophila melanogaster genomic scaffold 142000013386037 section 2 of 5, complete sequence
Position Repeat Coverage Repeat
1792 TG * 12 23/24 TG TG TG TG TG TG TG TG TG TG TG TA
1863 GT * 15 27/30 GT GT GT GT GT GT GT GT GT GT GT GA GT GC GA
5785 CA * 14 26/28 CA CA CA CA TA CA CA CA TA CA CA CA CA CA
18334 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AG AG
22885 AT * 11 20/22 AT AT AT AT AT AT AA AC AT AT AT
27171 AC * 10 18/20 AC AC AC AC AC TC AC AA AC AC
36179 TA * 11 20/22 TA TA TA TA CA TA TA TA TA TA TG
37481 TG * 10 18/20 TG TG TG TG TG TG TG TG TG CT
121190 TG * 17 31/34 TG TG TG TG TG TG TG TG TG TG TG TG TG TG GA TA TG
151234 AC * 10 18/20 AC GC AT AC AC AC AC AC AC AC
157498 AG * 16 29/32 AG AG AG AG AG AG AG AG TG AG AG AG AG AG GG CG
158887 AC * 11 20/22 AC GC AC AC AC AA AC AC AC AC AC
159841 CT * 10 18/20 CT CT CT CT CG CC CT CT CT CT
181903 TA * 11 21/22 TA TA TA TA TA TA TA TA TA TA TT
197713 TG * 31 57/62 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TT AG CT TA
199062 AG * 10 18/20 AG AG CG AC AG AG AG AG AG AG
203731 AG * 18 33/36 AG AG AG AG AG AG AG AC AG AG AG AG AG AA AG AG CG AG
204892 CA * 10 18/20 CA CA CA CG TA CA CA CA CA CA
205016 GT * 10 18/20 GT GT GT GT GG TT GT GT GT GT
212307 CA * 16 29/32 CA CA CA CA CA CA CA CA CA CA CA CA CA AC GA CA
212917 GT * 12 22/24 GT GT GC GT GT GT GT GT GT GC GT GT
214207 AC * 12 22/24 AC AC GC AC AC CC AC AC AC AC AC AC
217954 AT * 13 24/26 AT AC AT AT AT AT AT AT AT AT AT AC AT
217982 AT * 10 18/20 AT AT AT AC AT AT AT AT TT AT
231449 CT * 10 19/20 CT CT CT CT CT CT CT CT CT TT
236177 GA * 15 27/30 GA GA GA GA GA GA TA GA GA GA GA GA GA GG GG
260668 TG * 10 18/20 TG TG TG TG TG CG TG TG TG TA
261615 AC * 10 18/20 AC AC AC AC AC GC GC AC AC AC
267722 AC * 10 18/20 AC GC AC AC AC AC AC AC AC AT
269188 AC * 13 24/26 AC AC AC AC AC AC AC AC AC GC AC GC AC
271880 AC * 18 34/36 AC AC AC GT AC AC AC AC AC AC AC AC AC AC AC AC AC AC
274689 AT * 11 20/22 AT AT GT AT AT AT TT AT AT AT AT
287220 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GT GG GT GG
290304 AC * 10 18/20 AC AC GC AC GC AC AC AC AC AC
-----------------------------------------------------------------------------------------
Total sequence length......................... 292406
Total number of repeats detected.............. 34
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 2 1 0 8 2 3 3 0 2 0 0
15 to 19 0 0 2 1 1 1 1 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 1 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 2 3 1 9 3 5 4 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 2 TA = 7
3 AG + 1 GA + 2 CT + 0 TC = 6
4 GT + 5 TG + 3 CA + 9 AC = 21
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295493|gb|AE003568.1|AE003568 Drosophila melanogaster genomic scaffold 142000013386037 section 1 of 5, complete sequence
Position Repeat Coverage Repeat
7369 CA * 13 24/26 CA CT CA CA CA CA CA CA CA CA CA CA CC
7615 CA * 17 31/34 CA CA CA CA CA CA CA CA CA CG CA CA CG CA CA CA CC
18024 CA * 11 20/22 CA CA CA CA CA CA CA CA GG CA CA
25860 AC * 10 18/20 AC AC AC AC AC AC GC AC AC GC
27810 CA * 13 24/26 CA AA AA CA CA CA CA CA CA CA CA CA CA
33428 CA * 11 20/22 CA CA CA CA CA CA CA CA CT CG CA
36796 TG * 13 24/26 TG TG TG CG TG TG TG TG TG TG TG TG TA
37413 AC * 10 18/20 AC AC AC AC AC AC AG GC AC AC
40958 TG * 11 21/22 TG AG TG TG TG TG TG TG TG TG TG
41233 CA * 11 21/22 CA CA CT CA CA CA CA CA CA CA CA
45113 CA * 10 18/20 CA TA CA CA CA CA CA CA CC CA
71231 CA * 32 59/64 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CT TG TC CA
83749 CA * 11 20/22 CA CA CA CA CA CA CA CG CG CA CA
84810 AC * 13 24/26 AC AC AC AC AC AC AC AC AA AA AC AC AC
87212 GT * 15 27/30 GT GT GT GT GT GT GT GT GT GC GC GT GT GT AT
87398 TG * 17 31/34 TG TG TG TG TG TG TG TG TG TG TG TG TG TT TG CG GG
88753 TA * 12 22/24 TA TA TA TA TA TA TA TA TA TA TA CC
95734 AT * 10 19/20 AT AT AT AT AT AT AT AT AG AT
97721 CA * 15 28/30 CA GA CT CA CA CA CA CA CA CA CA CA CA CA CA
102707 GT * 10 18/20 GT GT GC AT GT GT GT GT GT GT
107033 CA * 12 22/24 CA GT CA CA CA CA CA CA CA CA CA CA
115692 AT * 16 30/32 AT AT AC AT AT AT AT AA AT AT AT AT AT AT AT AT
119505 TG * 12 23/24 TG TG TG TG TG TG TG TG TG TG TG TC
121341 CA * 10 18/20 CA CA CT CA CA CA CA CA CA GA
125170 TA * 11 20/22 TA TA TA TA CA TA TA TA CA TA TA
140883 AT * 11 21/22 AT AT AC AT AT AT AT AT AT AT AT
144262 AG * 12 22/24 AG AG AG CT AG AG AG AG AG AG AG AG
169525 CA * 16 30/32 CA CA CA CA CA CA CA CA CA CA CA CA CA CG CT CA
170097 CA * 12 22/24 CA CA TA CA CA CA CA CA CA CA CG CA
176126 TA * 17 32/34 TA TG TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT
189510 TA * 10 18/20 TA TA TA AA TA TA TA TG TA TA
189531 AT * 18 33/36 AT AT AT AT AT AT AT GT AT AT AT AT AT AT AT AT AC AC
191921 AT * 12 22/24 AT AT AT GT AT AT AC AT AT AT AT AT
191982 AT * 16 29/32 AT AT AT AT AT AT GT AT AT AT AA AT AT AT AT TT
193132 TA * 12 22/24 TA TA TA TA TA TA AA TG TA TA TA TA
196677 TG * 10 18/20 TG TG TG GG TG GG TG TG TG TG
228424 TG * 10 18/20 TG TG TG TG TG TG TG TA TG TA
244121 TA * 16 30/32 TA TA TA TA TG TT TA TA TA TA TA TA TA TA TA TA
250275 AT * 11 20/22 AT AT AT AT AT GT AT AC AT AT AT
256435 GT * 15 27/30 GT GT GT GT GT GT GT GT GT GT GT AT GT GG AT
259161 TC * 25 45/50 TC TC TC TC AC TC TC TC AC TC TC TC TC TC TC TC TC TC TC TC TG TC TC TT TG
260069 GA * 10 18/20 GA AA GA GA GA GA GA GA GC GA
263596 TG * 17 31/34 TG TG TG TA TG TG TG TG TG TG TG TG TG TG TG TG CC
267627 TG * 11 20/22 TG CA TG TG TG TG TG TG TG TG TG
267701 TG * 19 35/38 TG TG TC TG CG TG TG TG TG TG TG TG TG TG TG TG TG TG AG
273495 TC * 13 24/26 TC TC TC TC TC TC TC TC TC TC TC TC AT
278903 AC * 17 32/34 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC GC AT
286785 CA * 12 22/24 CA CT CA CA CT CA CA CA CA CA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 292926
Total number of repeats detected.............. 48
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 4 1 1 3 11 6 1 1 0 0 0
15 to 19 3 2 0 0 1 3 3 2 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 1 0 0 0
30 to 34 0 0 0 0 0 1 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 7 6 1 1 4 15 9 3 2 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
7 AT + 6 TA = 13
1 AG + 1 GA + 0 CT + 2 TC = 4
3 GT + 9 TG + 15 CA + 4 AC = 31
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7316092|gb|AE002629.1|AE002629 Drosophila melanogaster genomic scaffold 142000013386033, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295629|gb|AE003574.1|AE003574 Drosophila melanogaster genomic scaffold 142000013386033 section 2 of 2, complete sequence
Position Repeat Coverage Repeat
14284 TG * 12 22/24 TG TG TG TG TG TA TG TG TG TG CG TG
52543 CA * 21 38/42 CA CA CA CA CA GA CA CA CA CA CA CA CA CA CA CA CA CA AA GA TA
91214 TA * 11 20/22 TA TA TA TA TA TA TA TA TA TA NN
92819 GA * 17 31/34 GA CA GA GA GT GA GA GA GA GA GA GA GA GA GA GC GA
102961 AC * 10 19/20 AC AC AC AC AC AC AC AC AC TC
106993 CA * 16 29/32 CA CA CT AA CA CA CA CA CA CA CA CA CA CA CA CT
115190 TA * 10 18/20 TA TA CA TA TA TA TA TA TA TT
133019 AT * 11 20/22 AT CT AT AT AT AT GT AT AT AT AT
195659 CA * 11 20/22 CA AT CA CA CA CA CA CA CA CA CA
208684 AT * 13 24/26 AT AT AT TT AT AT AT AT AT AT AT AA AT
246618 CA * 11 20/22 CA CA CA CA CA CA CA CA CG CA CT
256456 AC * 18 33/36 AC AC AA AC AC AC AC AC AC AC AC AC AC AC AC AC TC AA
260941 TA * 19 35/38 TA TA TA TA TA TA TA TA TA AA TA TA TA AA TA TA AA TA TA
260987 AT * 10 18/20 AT AT AA AT AC AT AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 274456
Total number of repeats detected.............. 14
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 2 0 0 1 2 1 0 0 0 0 0
15 to 19 0 1 0 1 1 1 0 0 0 0 0 0
20 to 24 0 0 0 0 0 1 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 3 0 1 2 4 1 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 3 TA = 6
0 AG + 1 GA + 0 CT + 0 TC = 1
0 GT + 1 TG + 4 CA + 2 AC = 7
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7295620|gb|AE003573.1|AE003573 Drosophila melanogaster genomic scaffold 142000013386033 section 1 of 2, complete sequence
Position Repeat Coverage Repeat
23027 AT * 10 18/20 AT AT AT AT GT AT AT GT AT AT
67851 TA * 10 18/20 TA TA TG TA TA TA TG TA TA TA
78989 TA * 12 22/24 TA TA TA TA TA TA TA TA TG TA CA TA
107439 CA * 18 33/36 CA TA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA GC
111639 TA * 13 24/26 TA TA TA CA TA TA TA TA TA TG TA TA TA
169673 AT * 10 18/20 AT AT AT AT AT AA AT AT AT TT
228845 TG * 10 18/20 TG TG TG TG TG TG TG TG TG AC
237130 AG * 10 18/20 AG AG AG AG AG AG AG AG AT GG
254977 TA * 10 19/20 TA TA TA TA TA TA TA TA TA CA
257817 TA * 13 24/26 TA CA TA TA TA TA TA TA TA TA TA CA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 262131
Total number of repeats detected.............. 10
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 5 1 0 0 0 1 0 0 0 0 0
15 to 19 0 0 0 0 0 1 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 5 1 0 0 1 1 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 5 TA = 7
1 AG + 0 GA + 0 CT + 0 TC = 1
0 GT + 1 TG + 1 CA + 0 AC = 2
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7288912|gb|AE002813.1|AE002813 Drosophila melanogaster genomic scaffold 142000013385227, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 2620
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289135|gb|AE002822.1|AE002822 Drosophila melanogaster genomic scaffold 142000013385417, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1638
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289301|gb|AE002567.1|AE002567 Drosophila melanogaster genomic scaffold 142000013385554, complete sequence
Position Repeat Coverage Repeat
2749 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG TC GG
40098 TA * 10 18/20 TA TA TG TA TT TA TA TA TA TA
43129 TA * 10 18/20 TA TA TG TA TT TA TA TA TA TA
64671 TA * 10 18/20 TA TA TA CA TA TA CA TA TA TA
82098 AT * 11 21/22 AT AT AT AT AT AT AT AT AT AT AA
-----------------------------------------------------------------------------------------
Total sequence length......................... 84373
Total number of repeats detected.............. 5
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 3 0 0 0 0 1 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 3 0 0 0 0 1 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 3 TA = 4
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 1 TG + 0 CA + 0 AC = 1
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289214|gb|AE002930.1|AE002930 Drosophila melanogaster genomic scaffold 142000013385493, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1282
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289226|gb|AE003341.1|AE003341 Drosophila melanogaster genomic scaffold 142000013385503, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 1242
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7316107|gb|AE002566.1|AE002566 Drosophila melanogaster genomic scaffold 142000013386054, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7291169|gb|AE003451.1|AE003451 Drosophila melanogaster genomic scaffold 142000013386054 section 35 of 35, complete sequence
Position Repeat Coverage Repeat
187 TA * 11 20/22 TA TA TT TT TA TA TA TA TA TA TA
5916 CA * 13 24/26 CA CT CA CA CA CA CA CA CA CA CA CA TA
22781 AC * 10 18/20 AC AC AT AC AC AC AC GC AC AC
43108 CT * 11 20/22 CT CT CT CT CT CT CT TT CT CT TT
48509 TA * 10 18/20 TA TA TT TA TA TA TA TT TA TA
58974 CA * 12 22/24 CA CA CA GA TA CA CA CA CA CA CA CA
60475 TG * 11 20/22 TG CA TG TG TG TG TG TG TG TG TG
61093 TG * 18 34/36 TG TG TT TG TG TG TG TG TG TG TG TG TG TG TG TG TG AG
64436 CA * 12 22/24 CA CA CA CA CA GA CA CG CA CA CA CA
64713 GA * 10 18/20 GA TA GA GA GA GA GA GA GA GC
74646 GT * 10 18/20 GT GT GT GT GT GT GT GT TT AT
76180 AC * 11 20/22 AC AC AC AC AG AC AC AC AC AC AT
76516 TA * 16 29/32 TA AA TA TA TA TA TA TT TA TA TA TA TA TA TA TT
80300 TG * 10 18/20 TG TA TG TG TG TA TG TG TG TG
89261 GT * 10 18/20 GT GT GT GT AT GT GT GT GT GC
89479 TG * 10 18/20 TG TG AT TG TG TG TG TG TG TG
93949 GA * 15 27/30 GA GA GA AA GA GA GA GA GA GA GA GA TA GA GT
94202 TG * 10 18/20 TG TG TG CG TA TG TG TG TG TG
98341 GT * 10 18/20 GT GT GT AT AT GT GT GT GT GT
100108 TC * 11 20/22 TC TA TC TC TC TC TC TC TC TT TC
101135 CA * 13 24/26 CA CA CG CA CA CA CA CA CA CA CA CG CA
101888 AC * 12 22/24 AC AC AC AC TC GC AC AC AC AC AC AC
101956 AC * 10 18/20 AC AG AC AA AC AC AC AC AC AC
110181 CA * 12 23/24 CA CA CA CA CC CA CA CA CA CA CA CA
111781 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TG TG TG TC TG CA
112363 GT * 16 29/32 GT GT GT GT GT GT GT GT GT GT GT GC TT GT GC GT
126252 AT * 12 22/24 AT AT AT AT AT AT AT AT TT GT AT AT
128982 GA * 11 20/22 GA CA GA TA GA GA GA GA GA GA GA
130495 AT * 11 20/22 AT AT AT AT AT AT AC AT AT AT AG
141531 AC * 13 24/26 AC AC AC AC AC GC AC AC AC AC AC AC AT
142390 CT * 11 20/22 CT CT CT CT CT CT CT CT CT CT AC
145860 CA * 11 20/22 CA CA AA CA CA CA CA AA CA CA CA
153783 TA * 11 21/22 TA TT TA TA TA TA TA TA TA TA TA
159093 AT * 18 34/36 AT AT AT AT AT AC AT AT AT AT AT GT AT AT AT AT AT AT
166980 TG * 18 33/36 TG AG TG TG TG TG TG TG TG TG TG TG TG AG TT TG TG TG
168100 AT * 11 20/22 AT AC AT AT AT GT AT AT AT AT AT
170660 TA * 11 20/22 TA TA AA TA TA TA TT TA TA TA TA
172610 GA * 11 20/22 GA GA GA GA GA AA GG GA GA GA GA
172633 AG * 10 18/20 AG CG AG AG AG AG AG AG AG AT
173933 GT * 10 18/20 GT GT GT GT TC GT GT GT GT GT
178133 TG * 13 24/26 TG TG TG TG TG TG TC TA TG TG TG TG TG
179250 GT * 18 33/36 GT GT GT GT GT GT CT GT GT GT CT GT GT GT AT GT GT GT
183433 CA * 18 33/36 CA CA CA CA AA CA CA CA CA CA CA CA CG CA CA CA CA GA
184990 AC * 17 32/34 AC AC AC AG AC AG AC AC AC AC AC AC AC AC AC AC AC
189332 AT * 10 18/20 AT AT AT AT AT AG AG AT AT AT
190622 GT * 13 24/26 GT GT GT GT GT GG GT GG GT GT GT GT GT
190740 AT * 17 31/34 AT AT AT CT AT AT AT AT AT AT AT GT AT AT AC AT AT
204975 TG * 10 19/20 TG TG CG TG TG TG TG TG TG TG
207488 AT * 11 20/22 AT AT AT GT AC AT AT AT AT AT AT
212614 AT * 10 18/20 AT AT AC AC AT AT AT AT AT AT
217826 AG * 10 18/20 AG AG AG AG AG CG AG AG TG AG
-----------------------------------------------------------------------------------------
Total sequence length......................... 220623
Total number of repeats detected.............. 51
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 6 4 2 3 5 6 6 5 1 2 0 0
15 to 19 2 1 0 1 1 1 3 2 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 8 5 2 4 6 7 9 7 1 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
8 AT + 5 TA = 13
2 AG + 4 GA + 2 CT + 1 TC = 9
7 GT + 9 TG + 7 CA + 6 AC = 29
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7291133|gb|AE003450.1|AE003450 Drosophila melanogaster genomic scaffold 142000013386054 section 34 of 35, complete sequence
Position Repeat Coverage Repeat
1351 GA * 10 18/20 GA AA GA GA CA GA GA GA GA GA
2114 TG * 12 22/24 TG CG TG TG TG TG TG TG TG TG TG TT
2199 GT * 10 19/20 GT GT GT GT GT GT GT GT TT GT
6215 CA * 10 18/20 CA CA CA CA CA CA CA CT CA CC
6551 AG * 15 27/30 AG AA AG AG AG AG AG AG AG AG AG AG AG AC GG
6795 TA * 16 29/32 TA TA TA TA AA TA TA TA TA TA TA TA TA TA CA CA
8333 AG * 13 24/26 AG AC AG AG AG AG AG AG AG AG AG AG AC
10347 AC * 11 20/22 AC AC AC AC AC TT AC AC AC AC AC
11443 AC * 11 20/22 AC TC AC AC AG AC AC AC AC AC AC
25635 TA * 10 18/20 TA TA TG TA TT TA TA TA TA TA
28666 TA * 10 18/20 TA TA TG TA TT TA TA TA TA TA
30755 GT * 10 18/20 GT GT GT GT GT GT GT GT GC CT
33475 AC * 17 32/34 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AG AG
34891 AC * 10 18/20 AC CC AC AC AC AC AC AC AC CC
36076 GA * 11 20/22 GA GA TA GA GA CA GA GA GA GA GA
44234 AC * 18 33/36 AC AC AC AC AC AC AC AC AC AC AT AC AC AT AC GC AC AC
48063 GT * 17 31/34 GT AT GT AT GT GT GT GT GT GT GT GT GT GT GT GT GC
49844 TG * 10 18/20 TG CG TG TG TG TG TG TG TG AG
49871 GT * 17 31/34 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GA GA GC
49907 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT AT GG
51446 AT * 10 18/20 AT AT AT AT AT AT AT AT TT TT
53299 TC * 13 24/26 TC TC GT TC TC TC TC TC TC TC TC TC TC
61107 AT * 10 18/20 AT AT AT AT AT AT AT CA AT AT
64047 CA * 12 22/24 CA CA CA CC CA CT CA CA CA CA CA CA
70340 TG * 11 20/22 TG TG TG TG TG TG TG TG AG TG TA
70457 CA * 10 18/20 CA CA CA CA CA CA CA AA AA CA
78155 AC * 13 24/26 AC AC AC AC AC AC AC GC AC AC AC AC AA
89116 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA AA CT
91769 AT * 10 18/20 AT AT AT AT AT AT AT AT AT TC
98455 TG * 11 21/22 TG TG TG TG TG TG TG TG TG TG TT
98529 GA * 13 24/26 GA GC GA GC GA GA GA GA GA GA GA GA GA
98984 AC * 10 18/20 AC AA AC AC AC AC AC AC AG AC
110400 TG * 12 22/24 TG TG TA TC TG TG TG TG TG TG TG TG
110481 GT * 11 20/22 GT GT GT TA GT GT GT GT GT GT GT
118964 CA * 10 18/20 CA CA CA CA CA CA CA CA CA TG
119395 AC * 10 18/20 AC AC AC AC AC AC AC GC AT AC
119431 AC * 10 18/20 AC AG AG AC AC AC AC AC AC AC
136743 AT * 14 26/28 AT AT AC AT AT AC AT AT AT AT AT AT AT AT
139541 AT * 10 18/20 AT CT AT AT AG AT AT AT AT AT
139847 GT * 10 18/20 GT GT GT GT GT GC TT GT GT GT
140139 TG * 10 18/20 TG CG TG TG TG TG TG TG TG CG
141837 TA * 11 20/22 TA TA TA TA TA TA TA TA TG TG TA
146125 TG * 16 30/32 TG TG TG TG TG TG TG TG TG TG TG TG TG TG GG TC
146346 AC * 11 20/22 AC AC AC AC TC AC AC AC AC AC AG
162696 TG * 16 29/32 TG TG TG TG TG TG TG TG TG TG TG TG TG TG AG CT
162783 TA * 13 24/26 TA TA TA TA TG TA AA TA TA TA TA TA TA
164047 AT * 16 29/32 AT AA AT AT AT AT AT AT AT AT AT AT AT AT AG TT
164786 TG * 11 21/22 TG TG TG TG TG TG TG TG TG TT TG
172909 TG * 12 23/24 TG TG TG TG TG AG TG TG TG TG TG TG
173416 GT * 23 43/46 GT GT GT GG TT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT AT
182796 TA * 10 19/20 TA TA TA TA TA TA TA TA TA GA
186248 AT * 11 20/22 AT AT AT AT AT CT AT TT AT AT AT
187612 GT * 17 31/34 GT AT GA GT GT GT GT GT GT GT GT GT GT GT TT GT GT
187760 TG * 17 31/34 TG TA TG TG TG TG TG TG TG TG TG TG TG TG TT AG TG
190191 AT * 10 18/20 AT AT AT GT AT AC AT AT AT AT
190582 TG * 12 22/24 TG TT CG TG TG TG TG TG TG TG TG TG
193935 CA * 13 25/26 CA CA CA CA CA CA CA CA CA CA CA CA TA
195274 CA * 11 20/22 CA CG CA CA CA CA CA CG CA CA CA
195300 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA GA CA TA
200301 TA * 10 18/20 TA GT TA TA TA TA TA TA TA TA
200326 TA * 10 18/20 TA CA TA AA TA TA TA TA TA TA
205080 AT * 12 23/24 AT AT AT AT AT AT AT AT AT AC AT AT
206469 AT * 10 18/20 AT AT AT AC AT AC AT AT AT AT
215747 TG * 10 18/20 TG TG TG TG TG TG TG TG TG GA
216100 AT * 11 20/22 AT CT AT AT AT AT GT AT AT AT AT
216124 AT * 13 24/26 AT AT AT AT AT AT AT AT AT TT AT AT AG
216733 TC * 10 18/20 TC TC TT TC TC TC TC CC TC TC
217131 TG * 11 20/22 TG CA TG TG TG TG TG TG TG TG TG
256275 AC * 12 23/24 AC AC AC AC AC AC AC AC AC AC AC TC
266684 AC * 11 20/22 AC AC AC AC AC AC AT AC AC AC AG
271461 AC * 10 18/20 AC AA AG AC AC AC AC AC AC AC
272028 TA * 11 20/22 TA TA CA TA TA TA CA TA TA TA TA
283761 TA * 11 20/22 TA TA TA TA TA TA TA TG TA TC TA
292320 AC * 10 18/20 AC AC AC GC AC AC AA AC AC AC
-----------------------------------------------------------------------------------------
Total sequence length......................... 300732
Total number of repeats detected.............. 74
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 11 9 1 3 12 8 11 5 2 0 0 0
15 to 19 1 1 1 0 2 0 3 3 0 0 0 0
20 to 24 0 0 0 0 0 0 0 1 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 12 10 2 3 14 8 14 9 2 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
12 AT + 10 TA = 22
2 AG + 3 GA + 0 CT + 2 TC = 7
9 GT + 14 TG + 8 CA + 14 AC = 45
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7291099|gb|AE003449.1|AE003449 Drosophila melanogaster genomic scaffold 142000013386054 section 33 of 35, complete sequence
Position Repeat Coverage Repeat
1272 TG * 12 22/24 TG AA TG TG TG TG TG TG TG TG TG TG
4413 CA * 12 22/24 CA CA CA CA CA CT CA CA CA CA CA CC
7869 AC * 15 28/30 AC AC AC AC AC AC AC AC AC AC AC AC AC AT AT
11527 TG * 12 22/24 TG TG TG TG TG TG TG TG TG CG TT TG
15553 TA * 10 18/20 TA TA TA TA TA TA TA TA TT AA
30270 AG * 12 22/24 AG AA TG AG AG AG AG AG AG AG AG AG
38208 CA * 10 18/20 CA CA TA GA CA CA CA CA CA CA
43922 GA * 10 18/20 GA AA GA GA TA GA GA GA GA GA
43943 AG * 12 22/24 AG AG AG AG AG CG AG AG AG AA AG AG
45131 TC * 12 22/24 TC TT TC CC TC TC TC TC TC TC TC TC
45642 TA * 10 18/20 TA TA TA AA TA TA TA TA TA TT
45815 CA * 11 20/22 CA CA CA CA CA CA AA CA CA CA CG
47766 TA * 10 18/20 TA AA TA TA TA TA TA TA TA TT
48036 TA * 10 18/20 TA TA TA TA TA CT TA TA TA TA
58013 CA * 14 26/28 CA CA CA CA CA CA CA CA CA CA CA AA CA CG
82785 CT * 11 20/22 CT CT CT CT CT TT CT CT CT CT TT
108647 TA * 20 36/40 TA TA TA TA TA TA TA TA TA TT TA TA TA TC TA TA TA TA GA TC
110034 AG * 11 20/22 AG AA AT AG AG AG AG AG AG AG AG
111816 AT * 17 31/34 AT AT AT AT GT AG AT AT AT AT AT AT AT AT AT TT AT
112141 GA * 13 24/26 GA GC GA GA GA GA GA GA GA GA GA GA GG
120489 GT * 10 19/20 GT GT GT GT GT GT GT GT GT GG
122787 CT * 11 20/22 CT CT CT CT CT CT CC CT CA CT CT
156598 TC * 11 20/22 TC TC TC TC CC TC TC TC TC TC TG
156850 TA * 15 28/30 TA AA TA TA TA TA TA TA TA CA TA TA TA TA TA
159712 GT * 10 19/20 GT GT GT AT GT GT GT GT GT GT
160814 AT * 11 20/22 AT AT AT CT AT AT CT AT AT AT AT
163728 CT * 15 27/30 CT CT CT CT CT CT CT CT CT TT CT TT CT CT CG
164063 AT * 11 20/22 AT AC AT AT AT AT CT AT AT AT AT
168325 AT * 13 25/26 AT AT AT AT AT AT AT AT GT AT AT AT AT
176598 TG * 10 18/20 TG AT TG TG TG TG TG TG TG TG
178160 AT * 11 20/22 AT AT AT AT AT AT AT AT TT CT AT
182944 TA * 10 18/20 TA TA TT TA CA TA TA TA TA TA
184733 AC * 12 22/24 AC CC AC AC AC AC AC AC AC TC AC AC
184758 CA * 13 24/26 CA CA CT CA CA CT CA CA CA CA CA CA CA
186038 GT * 10 18/20 GT GT GT AT GT GT GT GT GT TT
186457 TG * 17 32/34 TG TG TC CG TG TG TG TG TG TG TG TG TG TG TG TG TG
196981 TG * 10 18/20 TG CG TG TG TG TG TG TG GG TG
200024 CA * 10 18/20 CA CC CA CA CA CA TA CA CA CA
200999 TG * 10 18/20 TG TC TC TG TG TG TG TG TG TG
201914 CA * 16 30/32 CA CA CA CA CA CA CG CA CA CA CA CA CG CA CA CA
202631 AT * 10 18/20 AT AG AT AT AT AA AT AT AT AT
202895 AG * 22 40/44 AG AG AG AG CG AG AG AG AG AG AG AG AG AG AG AG AG AG AG CT AT AG
216117 CA * 10 18/20 CA CA CA CA CA CA CA CA CT CT
217451 AC * 12 22/24 AC TC AC AC AC CC AC AC AC AC AC AC
219816 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TG TG TG TG TA CA
221697 CT * 15 27/30 CT CT CT CT CT CT CT CT CT CT TT CT CG CT CG
221874 AG * 15 27/30 AG AG AG AG AG AG AG AG AG AG AG AG AG GG GC
222276 GT * 11 20/22 GT GT GT GT GT GT GT GT GT TT TT
222558 GT * 11 20/22 GT GT GT GT GT GT GT TG GT GT GT
230538 TG * 10 18/20 TG TG TG TG TT TG TG TT TG TG
231249 GT * 10 18/20 GT GT GT GT GT GT GT GT GC GA
233631 CA * 12 22/24 CA CA TG CA CA CA CA CA CA CA CA CA
233708 CA * 25 46/50 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CG CG TA CA CA CA CT CA
236574 CA * 10 18/20 CA AG CA CA CA CA CA CA CA CA
236999 AT * 13 24/26 AT GT AT AT GT AT AT AT AT AT AT AT AT
244383 AC * 12 22/24 AC AC AC AC AC AC AC AG AC AC AC TC
251865 TA * 11 20/22 TA TA TA TA TG TA TA TA TT TA TA
256332 AT * 27 50/54 AT AT AT AT AC AT AT AT AT AT AT CT AT AT AT AT AT AT AT AT AC AT AT AT AT AG AT
256801 AT * 13 24/26 AT AA AT AT AC AT AT AT AT AT AT AT AT
260513 AG * 10 18/20 AG AG AT TG AG AG AG AG AG AG
262947 AC * 10 18/20 AC AC GC AC AC AC TC AC AC AC
285890 GT * 15 28/30 GT GT GT GT GT TG GT GT GT GT GT GT GT GT GT
286313 GT * 13 25/26 GT GT GT GT GT GC GT GT GT GT GT GT GT
287454 TG * 25 46/50 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TA TC TG TA AG
287826 TG * 10 18/20 TG TA TG TG TG TG TG TT TG TG
288480 TA * 15 27/30 TA AA TA TA TA TT TA TA TA TA TA TA TA TA TT
288531 GA * 10 18/20 GA GA GA GA GA GA GA TA CA GA
294442 TA * 11 20/22 TA TA TA TA TA TA TA TA TA TT TT
295831 AG * 16 29/32 AG AG AG AA AG AG AG AG AG AG AG AG AG AG CG CG
297635 TG * 10 18/20 TG AC TG TG TG TG TG TG TG TG
297673 TG * 10 18/20 TG TG TC TG TG TG TG TG TG GG
298035 TC * 12 22/24 TC TG CC TC TC TC TC TC TC TC TC TC
-----------------------------------------------------------------------------------------
Total sequence length......................... 299786
Total number of repeats detected.............. 72
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 7 7 4 3 4 9 9 7 3 2 0 0
15 to 19 1 2 2 0 1 1 2 1 0 2 0 0
20 to 24 0 1 1 0 0 0 0 0 0 0 0 0
25 to 29 1 0 0 0 0 1 1 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 9 10 7 3 5 11 12 8 3 4 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
9 AT + 10 TA = 19
7 AG + 3 GA + 4 CT + 3 TC = 17
8 GT + 12 TG + 11 CA + 5 AC = 36
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7291077|gb|AE003448.1|AE003448 Drosophila melanogaster genomic scaffold 142000013386054 section 32 of 35, complete sequence
Position Repeat Coverage Repeat
612 AC * 10 18/20 AC AC AC AT AC AC AC AC AA AC
3793 AT * 10 18/20 AT CT AT AT AT AT AC AT AT AT
13038 AG * 10 18/20 AG AG AG AG AG AG AG AG AG GA
20023 GT * 11 20/22 GT GT GT GT GT GT GT GT GT TT GA
20252 AC * 12 22/24 AC AA AT AC AC AC AC AC AC AC AC AC
29840 CA * 10 18/20 CA CG CA CT CA CA CA CA CA CA
33996 GA * 11 20/22 GA GA AA GA GA GA GA GA GA GA TA
36860 CA * 17 32/34 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA GA GA
45564 AT * 13 24/26 AT AT AT AT AT AT AT AT AT AG AT AT TT
46088 CT * 10 19/20 CT CA CT CT CT CT CT CT CT CT
51181 CA * 17 32/34 CA CA CA CA CA CA CA CA CA TA CA CA CG CA CA CA CA
51378 CA * 13 25/26 CA CA CA CA CA CA CA CG CA CA CA CA CA
52257 AT * 12 22/24 AT AT AT GT AG AT AT AT AT AT AT AT
55528 AG * 11 20/22 AG AG CG AA AG AG AG AG AG AG AG
55678 GA * 10 18/20 GA GA GC GA GA GA GA GC GA GA
55988 TA * 11 20/22 TA TA TA TA TA TA TA TG CA TA TA
56029 AT * 10 19/20 AT AT AT AT AT AT AT AT AT TT
58924 TA * 16 29/32 TA TA TA AA TA TA TA TA TA TA TA TA TA CA TA CA
62170 TG * 10 18/20 TG TG CG TG TG TG TG CG TG TG
63375 CA * 12 22/24 CA CA CA CA CA CA CA CA GA CG CA CA
63575 CA * 10 18/20 CA TA TA CA CA CA CA CA CA CA
66098 GA * 11 21/22 GA GA GA GC GA GA GA GA GA GA GA
67975 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AC GC TC
74560 TA * 16 29/32 TA TA TA TA AA TA TA TA TA CA TA TA TA TA CA TA
76882 AC * 15 27/30 AC AC AC AC AC GC AC AC AC AC AC AC AC AG TC
94523 AT * 15 27/30 AT AT AA AT AT AT AT AT AT AT AT AT TT AT AA
96287 TA * 11 20/22 TA TA TA TA TA TA TG GA TA TA TA
96674 GT * 19 35/38 GT GT GT GT GT GT GT GT GT GT GT GT GT CT GT CT GT GC GT
105593 TC * 13 24/26 TC TC AC TC TC TC TC TC TC TC TC TG TC
105693 CT * 13 24/26 CT CT CT CT CT CT CT CT CT CT CC CT GT
105905 CT * 10 18/20 CT CT CT CC CT CT CT CT GT CT
107408 GT * 10 18/20 GT GT GT GT GT GT GT GT TT TT
109848 TA * 10 18/20 TA TA TG TA CA TA TA TA TA TA
111043 AC * 15 28/30 AC AC AC AC AC AC AC AC AC AC AC AT AC AC TC
112204 AC * 16 30/32 AC AC AC TC TC AC AC AC AC AC AC AC AC AC AC AC
119066 TA * 10 18/20 TA TA TA TA TA TA TA TA TA GT
120995 AT * 10 18/20 AT AT AT AC AT AT AT GT AT AT
137032 AT * 10 18/20 AT AT AA AT AT AT AT AT AT TT
140735 AT * 16 29/32 AT AT AT AT AT AT TT AT AT AT AT AT AT AT CT TT
145395 TA * 16 29/32 TA CA TA TA TA TA TA TA TA TA TG TA TA TA TC TA
146639 CA * 10 18/20 CA CA CA CA CA CA CA CG GA CA
147113 CA * 12 22/24 CA GA CA CA CA CA CA CA CC CA CA CA
147309 CA * 11 20/22 CA CA CA CC CA CA CA CA CA CA CC
150523 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TG GG TG TG CG CG
155057 AC * 10 18/20 AC AA AC AC TC AC AC AC AC AC
156673 CA * 20 36/40 CA CA AA CA CA CA CA CA CA CA CA CA CA CA CA CA CA GA GA AA
159132 CA * 15 27/30 CA CA CA CT CA CA CA CA CA CA CA CA CA CA TT
160118 AT * 11 20/22 AT GG AT AT AT AT AT AT AT AT AT
167988 AT * 23 42/46 AT AT AT AT AT AT AT AC AT AT AT AT AT AT AG AT AT AT AC AT AT AA AT
169625 TG * 13 24/26 TG TG TG CG TC TG TG TG TG TG TG TG TG
172919 GT * 11 20/22 GT GT GC GT GT GT GT GT GT GT TT
177110 TG * 12 22/24 TG TG AG TG TG CG TG TG TG TG TG TG
177185 GT * 15 27/30 GT TT GT GT GT GT GT GT GT GT GT GA GT GT CT
181382 GT * 16 30/32 GT GT GT GT GT GT GT GT GT GT GT GT GT GA GT GG
183250 GT * 12 22/24 GT GT GT GT GT GT GT GT GT AT GA GT
184428 CA * 10 18/20 CA CA TG CA CA CA CA CA CA CA
187584 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC AC AC TT
207056 AT * 11 20/22 AT AT TA AT AT AT AT AT AT AT AT
207677 AC * 11 20/22 AC AC AC AC AC GT AC AC AC AC AC
208181 TG * 12 23/24 TG TG TG TG TA TG TG TG TG TG TG TG
208308 TG * 21 38/42 TG TG TG TG CG TA TG TG TG TG TG TG TG TG TG TG TG TG TT TA TG
209661 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC AC TC GC
209895 CA * 13 24/26 CA CA AG CA CA CA CA CA CA CA CA CA CA
210660 CA * 11 20/22 CA CA CA CA CA CA GG CA CA CA CA
210919 TC * 12 22/24 TC TC TC TC TC TC TC TC TC TC TT TA
212632 TG * 12 22/24 TG TG TG TG TG CG TG TG TG TT TG TG
215963 GT * 10 18/20 GT TT GT GT GT GC GT GT GT GT
216784 TC * 10 18/20 TC TC TC CC TC TC TC TC TG TC
216870 TG * 10 18/20 TG TG TG AG TG TG TG TG TG GG
218269 AT * 17 31/34 AT AT AT AT AC AT AT AT AT AT AT AT AG AT AT AT GT
222784 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TG TG TC TG TG CA
240400 AC * 10 18/20 AC AC AA AC AC AC AC AC AC AG
257286 AG * 11 20/22 AG AG AG AG AG AG AG AG AG TG AA
258663 GT * 10 18/20 GT GA CT GT GT GT GT GT GT GT
266635 CA * 12 23/24 CA CA CA CA CA CA CA CA CA CA CA CG
268795 AT * 10 18/20 AT AT AG CT AT AT AT AT AT AT
270675 GT * 15 28/30 GT GT GT GT GT GT GT GT TT GA GT GT GT GT GT
271271 CT * 10 18/20 CT CA CT CT CT CT CT CT CT CC
272514 CT * 10 18/20 CT CT CT CT GT CT CT GT CT CT
278624 CA * 15 28/30 CA CA TA CG CA CA CA CA CA CA CA CA CA CA CA
279875 CA * 11 20/22 CA CA CA CA CA CA CA CG CA AA CA
280361 CA * 10 18/20 CA CA TA CA CG CA CA CA CA CA
280922 AC * 10 18/20 AC GC AC AT AC AC AC AC AC AC
284495 TG * 10 18/20 TG TG TG TG TG TG TG TG TC TT
288142 CA * 10 18/20 CA CA CA CA CA CA CA CA CA AC
295147 TG * 13 24/26 TG TA TG TG TG TG TG TG TG TG TG TG TA
296322 GT * 10 18/20 GT GT GT GT GT GT GT GC GT GC
297855 AC * 10 18/20 AC AC AC AC AC AC TC AC AC TC
301773 TC * 17 31/34 TC AC CC TC TC TC TC TC TC TC TC TC TC TC TC TC TG
302470 TC * 11 20/22 TC TC TC TT TC TC TC CC TC TC TC
304318 GT * 16 30/32 GT GT GT GT GT GT GT GT GT GT GT TT GT GT GT GC
307557 TG * 16 29/32 TG TG TG TG TG TG TG TG TG TG TG TG CG TG CT TG
309418 TA * 12 22/24 TA TA TA TA TA TA TA TA TG TA TA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 310399
Total number of repeats detected.............. 93
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 9 5 3 3 10 14 8 7 4 5 0 0
15 to 19 3 3 0 0 3 4 3 5 1 0 0 0
20 to 24 1 0 0 0 0 1 1 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 13 8 3 3 13 19 12 12 5 5 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
13 AT + 8 TA = 21
3 AG + 3 GA + 5 CT + 5 TC = 16
12 GT + 12 TG + 19 CA + 13 AC = 56
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7291054|gb|AE003447.1|AE003447 Drosophila melanogaster genomic scaffold 142000013386054 section 31 of 35, complete sequence
Position Repeat Coverage Repeat
776 AT * 12 22/24 AT AC AT AC AT AT AT AT AT AT AT AT
6929 TA * 11 20/22 TA TA TA TG TA TA TA TA TA TA TG
14345 AC * 30 54/60 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AA GT GT AC AC AC AC CC
15473 AT * 14 26/28 AT AT AT AT AT AT AT AA AT AT GT AT AT AT
16584 TA * 11 20/22 TA TT TA TA TA TA TA TA TG TA TA
19421 TC * 10 18/20 TC TC AC TC GC TC TC TC TC TC
20218 TC * 11 20/22 TC TC TC TC TC TC TC TT TT TC TC
23509 AT * 10 18/20 AT AT TT AT AT AT TT AT AT AT
23966 AT * 15 27/30 AT AT AT AT AT AT AT AT AC AT AC AT AT AT AA
43037 CT * 20 36/40 CT CG CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT TA TT
45263 AT * 10 19/20 AT AT GT AT AT AT AT AT AT AT
48146 AT * 13 24/26 AT AT AT AC AT AT AC AT AT AT AT AT AT
59736 CA * 12 23/24 CA CA CA CA CA CA CA CA CA CA CA TA
63788 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TA TG TT
64662 AC * 20 36/40 AC AC TC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AT GC CC
64872 CA * 10 18/20 CA CA TA CA CA CA CA CA CA GA
65968 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG CG AG TG
66168 CA * 12 23/24 CA CA CA CA CG CA CA CA CA CA CA CA
67192 TC * 10 18/20 TC TC TA TC TC TC TC TC TA TC
68973 TG * 12 23/24 TG TG TG TG TG TG TG TG TG TG TG TA
71742 TC * 12 23/24 TC GC TC TC TC TC TC TC TC TC TC TC
74779 AC * 15 28/30 AC AC AC AC AC AC AC AC AC AC AC AC GC AC AG
76278 AC * 13 24/26 AC AC AC AC AC AC AC AC GC AC GC AC AC
84680 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TG TG TG TG GG GC
87522 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CT CA CG
93735 CA * 10 18/20 CA CA AA CA CA CA CG CA CA CA
93770 CA * 10 18/20 CA CA CT CA TA CA CA CA CA CA
96080 TG * 13 25/26 TG AG TG TG TG TG TG TG TG TG TG TG TG
100108 AT * 12 22/24 AT AT AT AT AT AT AT AC AT AT AT AC
102125 TG * 16 30/32 TG TA TG TG TG TG TG TG TG TG TG TG TG TG TG TT
103106 TA * 11 21/22 TA TA TA TA TA TA TA TA TA CA TA
106094 GT * 10 18/20 GT GT GT GC GT GT GT GT GT GC
107482 CA * 10 18/20 CA CA CA CA CA CA CA CA CC CT
107876 GT * 15 27/30 GT GT GT GT AT GT GT GT GT GT GT GT GC GT TT
113088 CA * 10 18/20 CA CA CA CA CA CA CA CA TG CA
114076 TG * 10 18/20 TG TA TG TG TG CG TG TG TG TG
114770 TG * 11 20/22 TG TG TG TG TG TG TG TT TG GG TG
116046 AC * 10 18/20 AC TC AC AC AC AC AC AT AC AC
120110 CT * 11 20/22 CT CT GT CT TT CT CT CT CT CT CT
136624 CA * 10 18/20 CA CA CA CG CA CA CA CA AA CA
138027 TC * 13 24/26 TC TC TC TC TC TC TC TC TC TC TA GC TC
139335 CA * 12 22/24 CA CA CG CA CA CA CA CA CA CA CA GA
148766 CA * 10 18/20 CA AA CA CA CA CA CA CA CA CG
152522 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TG CC
153621 AT * 15 28/30 AT AT AT AT AT AT AT AT AT AT AT AT AT AT TG
159841 CA * 12 22/24 CA CA CA CA CA CA CA CA TA CG CA CA
161380 GA * 11 20/22 GA GA GA AA GA GC GA GA GA GA GA
161486 AG * 15 28/30 AG CG AG AG AG AG AG AG AG AG GG AG AG AG AG
162341 CA * 10 18/20 CA CA CA CA CA CA CA CA TA CG
165971 CT * 10 18/20 CT CT CT CT AT CT CA CT CT CT
178596 AC * 13 24/26 AC TC AC AC AC AC AC AC AC AC GC AC AC
178802 TC * 11 20/22 TC TC TC TC TC TC TC CC TC TC TG
184628 TA * 10 18/20 TA CA TA TA TA TA TA TA TA AA
185173 GT * 17 31/34 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GC GG GG
186843 TA * 22 40/44 TA TA TA TA TT TA TA TA TA TA TA TA TA TA TA TA TA TA AA TA AG TA
187964 TG * 12 22/24 TG TG TG CG TG TG TG TA TG TG TG TG
188356 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AA AC
188587 GT * 17 32/34 GT GT GT GT GT GT GT GT GT GT GT GT GT GC GT GT GA
190039 AC * 15 27/30 AC AC AC AC AC AC AC AC AC AC AC AC GC AA AG
190295 AC * 16 29/32 AC AC CT AC AC AC AC AC AC AC AC AC AC AC AC AT
195473 AT * 11 21/22 AT AT AT TT AT AT AT AT AT AT AT
197532 AC * 12 22/24 AC AC GC AC AC TC AC AC AC AC AC AC
197580 AC * 15 28/30 AC AC CC AC AC AC AC AC AC AC AC AC AC AT AC
198098 TG * 16 30/32 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG GC
201302 TA * 12 22/24 TA TT AA TA TA TA TA TA TA TA TA TA
204234 CA * 18 33/36 CA AA CA CA CA CA CA CA CA CA CA CA CA CA AG CA CA CA
206091 AC * 10 18/20 AC CA AC AC AC AC AC AC AC AC
207494 AG * 21 39/42 AG AG AG AG AT AG AG AG AG AG AG AG AG AG GG AG AG AG AG TG AG
207538 AG * 11 20/22 AG AG AG AG AG AG AG AG GG AG AA
209712 CT * 21 38/42 CT CT CT CT CT CT CC CT CT CT CT CT CT CC CT CT CT GT CT CC CT
211070 GT * 18 34/36 GT GT GT CT CT GT GT GT GT GT GT GT GT GT GT GT GT GT
213408 TG * 12 22/24 TG TG TG CG TG TG TG TC TG TG TG TG
236660 AT * 10 18/20 AT AT AT AT AT AT AT AT TT TT
237937 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AG AG
238487 AT * 10 18/20 AT AT AT AT AT AT AT AT AT TA
246989 AC * 10 18/20 AC GT AC AC AC AC AC AC AC AC
247654 AT * 17 31/34 AT AT AT AT AT AT AT GT AT AT GT AT AT AT AC AT AT
250746 GA * 12 22/24 GA GC GA GA GA GA GA GA GA GT GA GA
253681 AG * 10 18/20 AG AG AG CG AG AG AG AG CG AG
253809 AT * 10 18/20 AT AT AT AT AA AT AT AA AT AT
273331 AT * 11 20/22 AT GG AT AT AT AT AT AT AT AT AT
279719 TA * 11 20/22 TA TA TA TA TA TA TA CA TA TT TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 304060
Total number of repeats detected.............. 82
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 13 6 2 2 6 13 9 1 6 2 0 0
15 to 19 3 0 1 0 4 1 3 4 0 0 0 0
20 to 24 0 1 1 0 1 0 0 0 0 2 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 1 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 16 7 4 2 12 14 12 5 6 4 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
16 AT + 7 TA = 23
4 AG + 2 GA + 4 CT + 6 TC = 16
5 GT + 12 TG + 14 CA + 12 AC = 43
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7290992|gb|AE003446.1|AE003446 Drosophila melanogaster genomic scaffold 142000013386054 section 30 of 35, complete sequence
Position Repeat Coverage Repeat
3820 AT * 11 20/22 AT AT AT AT AT AT GT AT AT AT AG
8522 CT * 12 22/24 CT TT CT CC CT CT CT CT CT CT CT CT
11025 GA * 10 18/20 GA GA GG GG GA GA GA GA GA GA
11132 TC * 11 20/22 TC TA TC TC TC TC TC TC TC AC TC
11448 GT * 15 27/30 GT GT GT AT GT GT GT GT GT GT GT GT GA GT GC
17716 CA * 11 20/22 CA CG CA CA CA CA CA CA CA CA GA
21907 TG * 10 19/20 TG TG TG TG TG TG TG TG TG CG
23192 TA * 11 20/22 TA CA TA CA TA TA TA TA TA TA TA
37394 CA * 11 21/22 CA CA CA CA CA CA CA CA CA CA AA
50798 TA * 10 18/20 TA TA TA CA TA TA CA TA TA TA
67537 GT * 20 36/40 GT GT GT GT GT GT GT GT GT GT GT GT GT GC AT TT GT GT GT TT
80680 CA * 14 26/28 CA CA CA CA CA CA CA CA CA CA CA CA CA TG
83747 CA * 11 21/22 CA CA CA CA CA CA CA CA CA CA CG
83976 TA * 13 24/26 TA TA TC TA TA CA TA TA TA TA TA TA TA
86060 CT * 10 18/20 CT CT CT CT CT CT CT CT CG TT
86504 GT * 11 20/22 GT GT GT GT GA GT GT GA GT GT GT
90867 TA * 13 24/26 TA TA TA TA AA TA TA TA TA CA TA TA TA
91969 TA * 10 18/20 TA TA TA TA TA TA TA TT TG TA
94963 GA * 11 20/22 GA TA GA GC GA GA GA GA GA GA GA
103308 TG * 15 27/30 TG CG TG TG TG TG TG TG CG TG TG TG TG TG TA
112975 TA * 10 18/20 TA TA CA TA TA TA TA TA TA AA
120271 TA * 13 24/26 TA TA TG TA TA TT TA TA TA TA TA TA TA
120616 TA * 11 20/22 TA TG TG TA TA TA TA TA TA TA TA
120643 TA * 10 18/20 TA TA TA TA TA TA TA TA TA AT
120745 TA * 22 40/44 TA TA TT TA TA TT TA TA TA TA TA TA TA TA TT TA TA TA TA TA TG TA
130551 TA * 11 20/22 TA TT TA AA TA TA TA TA TA TA TA
132221 TG * 14 26/28 TG TG TG TG TG TG TG TG TG TG TG TG TG GC
132882 GT * 10 18/20 GT GT GT GA GT GT GT GT GT GC
133527 GT * 10 18/20 GT GT GT GT GT GT GT GC GT GC
139354 AC * 11 21/22 AC AC AC AC AC AC AC AC AC AC GC
140414 CA * 12 22/24 CA CA CA AA CA AA CA CA CA CA CA CA
141047 AC * 17 31/34 AC AC AC AC AC AC AC AC AC AC AC AC GC CC AT AC AC
141783 AG * 12 22/24 AG AT AG AG CG AG AG AG AG AG AG AG
143671 TA * 14 26/28 TA TA TA TA TA TA CA TA TA TA TA TA TA TN
144698 AT * 10 18/20 AT AT AT CT AT AT AT AC AT AT
147421 TA * 10 18/20 TA TA TA TA TA TA CA TG TA TA
147522 AT * 12 23/24 AT AT AT AT AC AT AT AT AT AT AT AT
149547 AT * 18 33/36 AT AT AT AT AT AT AT AT AT AC AT AT AT AT AT AT AT GC
150632 AT * 11 20/22 AT AT AT GT AT AT AT AT AT AC AT
151221 AT * 10 18/20 AT AT TT AT AT AT AT AT AC AT
151368 AT * 27 49/54 AT AT AT AT AC AT AT AT AT AC AT AT AT AT AC AT AT AT AT AT AT AT AT AT GT GT AT
152562 AC * 12 23/24 AC AC AC AC AC AC AC AC AC AC AC AT
156192 CA * 10 18/20 CA CA CC CA CA CC CA CA CA CA
156384 AT * 10 18/20 AT AT AT AT GT AA AT AT AT AT
156404 TA * 16 29/32 TA TA TA TA TA TA CA TA TA TA TT TA TA TA TA CA
158319 AG * 36 65/72 AG AA AG AG TG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AA AA GT GG
173108 AT * 14 26/28 AT AT AT AC AT AT AT AT AT AT AT GT AT AT
179882 AT * 10 18/20 AT AT AT AT AT AT AT AT AT TA
182060 TA * 10 18/20 TA CA TA TA TA TG TA TA TA TA
234719 TA * 15 27/30 TA TA TA GA TA TA TA TA TA TG TA TA TA TA TC
251956 AG * 17 31/34 AG AG CA AG AG AG AG AG AG AG AG AG AG AG AG CG AG
262701 TA * 11 20/22 TA TA TA TA TA TA TA TA TT TA TT
265288 TA * 16 30/32 TA TA TA GA TA TA TA TA AA TA TA TA TA TA TA TA
267233 AT * 10 18/20 AT AT AC AT AT AT AT AT GT AT
269207 CA * 12 23/24 CA CA CA CA CA CA CA CA CA CA CT CA
272978 TC * 10 18/20 TC TC TC TC TC TC TC GC GC TC
273588 AG * 11 20/22 AG AG AA AG AG AG AG AG AG AG TG
276436 GT * 35 63/70 GT AT GT AT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GC GT GT GT GC GA GT GT GC GT GT GT GA
278206 AT * 13 24/26 AT AT CT AT AT AT AT AT AT AT AT AT GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 303104
Total number of repeats detected.............. 59
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 10 14 2 2 2 7 2 3 2 2 0 0
15 to 19 1 3 1 0 1 0 1 1 0 0 0 0
20 to 24 0 1 0 0 0 0 0 1 0 0 0 0
25 to 29 1 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 1 0 0 0 0 1 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 12 18 4 2 3 7 3 6 2 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
12 AT + 18 TA = 30
4 AG + 2 GA + 2 CT + 2 TC = 10
6 GT + 3 TG + 7 CA + 3 AC = 19
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7290970|gb|AE003445.1|AE003445 Drosophila melanogaster genomic scaffold 142000013386054 section 29 of 35, complete sequence
Position Repeat Coverage Repeat
6265 TG * 12 23/24 TG TG TG TG TG TG TG TG TG TG TG AG
11592 GT * 11 20/22 GT GT GT GT GT GT GT GT AT GT GC
16665 AT * 10 18/20 AT AT AT GT AT AT AT AT TT AT
17124 AT * 20 36/40 AT AT AT AG AT AT AT GT AT AT AT AT AT AT AT GT AT AT AT TT
17279 CA * 12 22/24 CA CA CA CA CA CA CA CA CG CA CA CC
26523 TG * 18 33/36 TG TG TG CG TG TG TG TG TG TG TG CG TG TG TG TG TG AG
27669 AC * 10 18/20 AC AC AC AT GC AC AC AC AC AC
28202 TG * 17 32/34 TG TG TG TG TG TT TG TG TG TG TG TG TG TG TG TG TA
30309 TG * 15 28/30 TG TG TG TG TG TG TG TG TG TG CG AG TG TG TG
38204 CA * 13 24/26 CA TA CA CA CA CA CA CA CA CA CA CT CA
40870 CT * 10 18/20 CT CT CT CT CG CT CT CG CT CT
44717 AT * 10 18/20 AT AC AT AC AT AT AT AT AT AT
45637 AT * 10 19/20 AT AT AT AT AT GT AT AT AT AT
56483 AT * 12 22/24 AT AT AT AG AT AT AA AT AT AT AT AT
65213 TG * 10 18/20 TG TG TG TG TG CG TG TG TG GG
68887 AG * 10 19/20 AG AG AG AG AG AG AG AG AG AT
69117 AC * 13 24/26 AC GC AC AC AC AC AC AC AC AC AC AC AT
75081 CA * 10 18/20 CA CA CA CA CA TA GA CA CA CA
78389 TA * 10 18/20 TA TG TA TG TA TA TA TA TA TA
78961 AT * 10 19/20 AT AT AT AT AT AT AT AT TT AT
82611 AT * 13 24/26 AT AT AT AC AT AC AT AT AT AT AT AT AT
84776 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TT TC
87984 AG * 10 18/20 AG CG AG AG AG AG AG GG AG AG
92150 GT * 11 20/22 GT AT GT GT GT GT GT GT GT GT TT
96189 GA * 10 18/20 GA GA GA GA TA GA GA TA GA GA
97486 AT * 12 22/24 AT AT AT AC AT AT AT AT GT AT AT AT
97554 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT AT TT
98257 CA * 24 44/48 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CG CA CA CA GG CG CA CA
98519 TG * 10 18/20 TG TG TG TC TG TT TG TG TG TG
98823 TG * 20 37/40 TG TG TG AG TG TC TG TG TG TG TG TG TG TG TG TG TG TG TG CG
99910 AC * 15 28/30 AC AC TC GC AC AC AC AC AC AC AC AC AC AC AC
100534 GT * 13 24/26 GT GT GC GT GT AT GT GT GT GT GT GT GT
100724 TG * 15 27/30 TG AG TG TG TG CG TG TG TG TG TG TG TG TG TT
102340 CT * 18 33/36 CT TT CT CT CT CT CG CT CT CT CT CT CT CT CT CT AT CT
107886 AT * 10 18/20 AT AT AT AT AT AT GT AT GT AT
112340 GT * 17 31/34 GT GC GT GC GT GT GT GT GT GT GT GT GT GT GT GC GT
112570 CA * 15 27/30 CA CA CA CA CA CG CA CA CG CA CA CA CA CA GA
116367 AT * 16 29/32 AT AT AT AT AT GT AT AT AT AT AT AT GT AT AT AC
127309 AT * 12 22/24 AT AT AT AT AT AT AC AT AT AT AT GT
133522 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TA TC
146801 GT * 11 20/22 GT GT GT GT GT GT GT GT GT GA GC
148598 AT * 12 23/24 AT AT AT AT AC AT AT AT AT AT AT AT
154829 TA * 10 18/20 TA TA TA TA CA TA TA TA TA TC
156640 TA * 11 20/22 TA GA TA TA GA TA TA TA TA TA TA
158792 AT * 12 23/24 AT AT AT AT AT AT AT AT AA AT AT AT
160006 GT * 16 29/32 GT GT GC GT GT GT GT GT GT GT GT GT GT GT AT GG
160083 AG * 11 20/22 AG AG AG AG AT AG AA AG AG AG AG
169079 AT * 11 20/22 AT AT AT AT AT AT AT AT AG AT AA
170131 CA * 12 22/24 CA CA CA CA TA CA CA CA CA CC CA CA
171122 CA * 10 18/20 CA AA CA AA CA CA CA CA CA CA
172829 AC * 10 18/20 AC AC AC AC AC AC AC AC AG AG
174018 CA * 11 20/22 CA CA CA CA CA CA CA CA TG CA CA
180626 GT * 11 20/22 GT AT GC GT GT GT GT GT GT GT GT
180661 GT * 10 18/20 GT GC CT GT GT GT GT GT GT GT
187060 TA * 16 30/32 TA TA TA TA TA TG TA TA TA TA TA TA TA TA TA TT
194633 TA * 10 18/20 TA AA AA TA TA TA TA TA TA TA
198365 GT * 17 31/34 GT AT CT GT GT GT GT GT GT GT GT GT GT GT GT GG GT
202081 TA * 12 22/24 TA TT TA TA TA TA TA TA TA TA TA CA
203298 TA * 18 33/36 TA CA TA TA TA TA TA TA TA TG TA TA TA TA TA TA TA TG
207086 TC * 15 27/30 TC AC TC TC TC TC TC TC TC TC TC TC TC TC GA
207346 AG * 12 22/24 AG AG AG AG AG CG AG AG CG AG AG AG
207462 CT * 11 20/22 CT CG CT CT CG CT CT CT CT CT CT
207494 CT * 10 18/20 CT CT CT CC CT CT CG CT CT CT
215492 CA * 20 36/40 CA CA CA CG GA CA CA CA CA CA CA CA CA CA CA CG CA CA CA AA
223287 GT * 22 40/44 GT GT GT GT GT GT GT GC CT GT GT GT GT GT TT GT GT GT GT GT GT GC
229964 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG AT
239912 TA * 15 27/30 TA TA TA TA TA TA TA TA TA TT AA TA TA TA AA
245746 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG TG AT
247673 AT * 10 18/20 AT AT AT GT AT AT AT AT AT TT
251436 TC * 33 61/66 TC TC GC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TT TT TG TT
256875 CT * 11 20/22 CT CT CT CT CT CT CT CT CT TT GT
257475 CA * 16 30/32 CA CA CA CA CA AA CA CA CA CA CA CA CT CA CA CA
259839 TG * 12 22/24 TG TG TA GG TG TG TG TG TG TG TG TG
261346 GT * 10 18/20 GT GT GT GT GT GT GT AG GT GT
269218 AC * 13 25/26 AC AC AC AC AC AC AC AC AC AC AC AC TC
270883 AC * 13 24/26 AC AG AA AC AC AC AC AC AC AC AC AC AC
274914 AT * 13 24/26 AT AT AT AC AT AT AT AT AT AT AT AT CT
277845 AT * 21 38/42 AT AT AT AT AG AT AT GT AT AT AT AT AT AT AT AT AC AT AT AT GT
280039 TA * 13 24/26 TA TA TA TA TA TA CA TA TA AA TA TA TA
281870 TC * 12 22/24 TC TC TC TC TC TC TC TC TC TT GC TC
298530 TA * 10 18/20 TA TA TA TA TA TA CA TA TA TC
305901 CT * 12 22/24 CT TG CT CT CT CT CT CT CT CT CT CT
306201 CT * 13 24/26 CT CT GT CT GT CT CT CT CT CT CT CT CT
306386 CA * 10 18/20 CA CA CA CA CA AA CA CA CA TA
308097 CA * 11 20/22 CA AA AA CA CA CA CA CA CA CA CA
308384 CA * 18 33/36 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CT CA GT
309415 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CC AA CA
310408 CA * 10 18/20 CA CA CA CA CA CA TA GA CA CA
310524 AT * 10 18/20 AT AT AT AT AT AT AT AG AC AT
310734 TA * 10 18/20 TA TA TA CA CA TA TA TA TA TA
310954 TA * 12 22/24 TA TA TA TA CA TA CA TA TA TA TA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 313965
Total number of repeats detected.............. 91
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 15 9 4 1 5 10 8 8 1 6 0 0
15 to 19 1 3 0 0 1 3 4 3 1 1 0 0
20 to 24 2 0 0 0 0 2 1 1 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 1 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 18 12 4 1 6 15 13 12 3 7 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
18 AT + 12 TA = 30
4 AG + 1 GA + 7 CT + 3 TC = 15
12 GT + 13 TG + 15 CA + 6 AC = 46
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7290927|gb|AE003444.1|AE003444 Drosophila melanogaster genomic scaffold 142000013386054 section 28 of 35, complete sequence
Position Repeat Coverage Repeat
5872 AG * 11 21/22 AG AG AG AG AG AG AG AG AG AG CG
17351 AC * 12 22/24 AC AC AC AC AC AC AC AA AT AC AC AC
21969 TG * 10 18/20 TG TG TG TG TG TG TG AG TG TA
25357 AC * 10 18/20 AC AC AC AC AC AC AC AC CC AA
25737 AT * 10 18/20 AT AT AT AT AT AT AT AC AA AT
29748 TG * 11 20/22 TG TG TG TG TG TG TG TG AG TG TC
35316 TA * 10 18/20 TA TA TA TA CA TA TA TA TA TT
50856 AT * 12 23/24 AT AT AT AT AT AT AT AC AT AT AT AT
51599 AT * 12 23/24 AT AT AT AT AT AT AT AT AT GT AT AT
60097 TA * 16 29/32 TA TA TA TG TA CA TA TA TA TA TA TA TA TA TG TA
63555 CT * 10 18/20 CT CT CT CT CT CT CT CT CT TA
69196 AT * 12 22/24 AT AA AT AT AT AT AT AT AT AT AT AN
83774 AT * 12 22/24 AT AT AT AT AT AT GT AT AT AT AT AC
86662 TA * 10 18/20 TA TA TA TA TA CA TA TA TA TC
95157 CT * 18 33/36 CT CT AT CT CT CT CG CT CT CT CT CT CT CT CT CT GT CT
102809 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GT GT GT AA
104810 TG * 10 18/20 TG TG TG TG TG TG TG TG TT GG
106968 TG * 10 18/20 TG TG TG TG TG TG TG TG TG CT
108676 GT * 11 20/22 GT GT GT GT GT GT GT GT GT GC TT
109375 AT * 13 24/26 AT AT AT AT AT AT AG TT AT AT AT AT AT
116794 TA * 12 22/24 TA TA TA TA TA TA TA TA TA TG TT TA
118104 CA * 11 20/22 CA GA CA GA CA CA CA CA CA CA CA
118320 CT * 10 18/20 CT CC CA CT CT CT CT CT CT CT
123262 GT * 10 18/20 GT GT GT GA GT GT GT GA GT GT
124162 AT * 12 22/24 AT AT AT AA AT AT AT AT AT AT AT TT
126750 TG * 13 24/26 TG TG TG TG TG TG TG CT TG TG TG TG TG
128269 AT * 12 22/24 AT AT AC AT AT TT AT AT AT AT AT AT
133568 CT * 12 22/24 CT CT CT CT CT CT CT CT CT CT CT TA
153728 CA * 10 18/20 CA CT CC CA CA CA CA CA CA CA
160948 AT * 12 22/24 AT AT AT AC AT AT AT AT AT GT AT AT
164327 TA * 13 24/26 TA TA TA TA TA TG TA TA TA TG TA TA TA
175225 TA * 10 18/20 TA TG CA TA TA TA TA TA TA TA
176564 TG * 15 27/30 TG TG TG TG CG TG TG TG TG TG TG TG CG TG CG
182194 TA * 12 22/24 TA TT TA CA TA TA TA TA TA TA TA TA
182692 AC * 11 20/22 AC AC AC AC AC CC AC AC AC AC AA
203505 TA * 11 20/22 TA CA TA CA TA TA TA TA TA TA TA
206328 GT * 21 38/42 GT GT GA GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GG AG
206546 AC * 10 18/20 AC AC AC AC AC AC AC AC GC AA
210111 TA * 13 24/26 TA TA TA TA TA TA TA TA TC TA TA TT TA
211759 AT * 10 18/20 AT AT AT AT AT AA AT AT GT AT
214456 TG * 10 18/20 TG TG TG TG TG TG TG TG TG GT
214638 TA * 10 18/20 TA TT TA TT TA TA TA TA TA TA
215082 TA * 12 22/24 TA TA TT TA TA TA TA TA TA TA TA TT
215713 AT * 12 22/24 AT AC AT AT AT AT AT AT AT AT AT TT
224602 TG * 11 20/22 TG TG CC TG TG TG TG TG TG TG TG
224884 CT * 15 27/30 CT CT CT CT CT CT CT CT CT CT CT AT CG CT CA
234098 AT * 10 18/20 AT AT AT AT AA AG AT AT AT AT
234119 TA * 11 20/22 TA TA TT TA TA TA TA TA TA AA TA
234851 TC * 13 24/26 TC GC TC TC TC TC TC TC TC TC AC TC TC
241546 TA * 11 20/22 TA TA TA TA TG TA TA CA TA TA TA
247798 AT * 10 19/20 AT AA AT AT AT AT AT AT AT AT
252648 TG * 11 20/22 TG GG TG TG TG TG TG TG TG TG GG
253502 AT * 10 18/20 AT AT AA AT AT AT AC AT AT AT
255936 CA * 11 20/22 CA AA CA CA CA CA CA CA CT CA CA
258526 AG * 17 31/34 AG CG AG AG AG AG AA AG AG AG AG AG AG AG AG AG CG
275349 AT * 10 18/20 AT GT AT AT AT AA AT AT AT AT
278502 CA * 12 22/24 CA CA CA CA CA CA CA CA CA TA CG CA
279886 TG * 18 33/36 TG CG TG TG TG TG TG TG TG TG TG TG TG TG TG TA AG TG
288558 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG GA
291930 AG * 12 23/24 AG AG AG AG AG AG AG AG AG AG AG AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 300710
Total number of repeats detected.............. 60
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 15 12 2 0 4 4 9 3 1 3 0 0
15 to 19 0 1 1 0 0 0 2 0 0 2 0 0
20 to 24 0 0 0 0 0 0 0 1 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 15 13 3 0 4 4 11 4 1 5 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
15 AT + 13 TA = 28
3 AG + 0 GA + 5 CT + 1 TC = 9
4 GT + 11 TG + 4 CA + 4 AC = 23
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7290880|gb|AE003443.1|AE003443 Drosophila melanogaster genomic scaffold 142000013386054 section 27 of 35, complete sequence
Position Repeat Coverage Repeat
4086 TG * 10 18/20 TG TG TG TT GG TG TG TG TG TG
4461 GT * 11 20/22 GT GT GT TT GT GT GT GT GT GT GG
52548 TA * 10 18/20 TA TA GA TA CA TA TA TA TA TA
55899 AT * 11 20/22 AT AT AG AT AT AT AT AT AT GT AT
58444 TC * 11 21/22 TC TC TC TC TC TC TC TC TC TG TC
65032 AC * 10 18/20 AC AC AC AC AC AC GC AC AC GC
67464 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GC GT AT
67724 AT * 11 20/22 AT AT AT AT AT AC AT AT AT TT AT
69190 AG * 11 21/22 AG AG AT AG AG AG AG AG AG AG AG
72477 AC * 11 20/22 AC AC AA AC GC AC AC AC AC AC AC
74193 TG * 15 27/30 TG CG TG TG TG TG TG TG TG TG TG TG TG TG CT
74641 TG * 10 18/20 TG TG TG TG TG TG TG TA TG TT
75378 TA * 12 22/24 TA TA TA TA TA TA TA TA TA AA TA TT
76418 AT * 12 23/24 AT AT AT AT AT AT AC AT AT AT AT AT
78439 AC * 11 20/22 AC GA AC AC AC AC AC AC AC AC AC
83065 GA * 10 18/20 GA AA GA GA GA GA GA GA GA GT
89694 CA * 13 24/26 CA CA AA CA CA CA CA CA CA CA CA GA CA
94812 TA * 13 24/26 TA TA TA TA TA TA TA TA CA TA TA TA TT
95224 CA * 13 24/26 CA GA CA CA CC CA CA CA CA CA CA CA CA
98185 CA * 10 18/20 CA CA CA CA CA TA CA CA CA CT
101056 CA * 12 22/24 CA GG CA CA CA CA CA CA CA CA CA CA
101200 CT * 12 22/24 CT CT CT CT CT CT CT CT CT TG CT CT
105911 TA * 10 18/20 TA TA TA TA TA TA AA TA TA TT
111395 TA * 10 18/20 TA TA TA TA TA CA TA TA TA TG
113238 CT * 13 24/26 CT CT CT TT CT CT CT CT CT CT CT CT AT
114192 CA * 17 31/34 CA CA CA AA CA CG CA CA CA CA CA CA CA CA CA CC CA
114832 CA * 19 35/38 CA TA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CT CA TA
121625 AT * 10 18/20 AT AT AT AT AC AT AT AT AT GT
124766 AC * 10 19/20 AC AC CC AC AC AC AC AC AC AC
125694 TA * 13 24/26 TA TA TA TA AA TA TA TA TA TA TT TA TA
141848 CA * 12 22/24 CA CA CA CA CA CA CA CA CA TG CA CA
162538 CT * 11 20/22 CT CT CT CT CT CT CT CT CA CT CA
163236 CT * 12 22/24 CT CT CT CT CT CT CT CT CT CC CT CG
164787 AT * 10 18/20 AT AT CT TT AT AT AT AT AT AT
168843 CA * 12 23/24 CA CA CA CA CA CA CA CA CA CA CA CG
171691 TC * 12 22/24 TC TC CC TC TA TC TC TC TC TC TC TC
176201 TG * 11 21/22 TG TG AG TG TG TG TG TG TG TG TG
176299 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GT GG GT GG
177541 TG * 19 35/38 TG TG TG TG TG TG TG CG TG TG TG TG TG TG AG TG TG AG TG
186144 CA * 10 18/20 CA AA CA CA CA CA CA CA CA CG
188481 GT * 10 18/20 GT GT GT GT AT GT TT GT GT GT
189765 TA * 11 20/22 TA TA AA TA AA TA TA TA TA TA TA
191529 TG * 21 38/42 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TC TG TA GG TG AG
197148 TG * 18 33/36 TG TG TG TG TG TG TT TG TG TG TT TG TG TG TG TG TG AG
199010 AG * 10 18/20 AG AG AG AT AG AG TG AG AG AG
200901 AC * 12 22/24 AC GC AC AC AC AC AC AC AC AA AC AC
202571 TG * 11 20/22 TG TG TG TG TG TG TG CG TG TG TT
202655 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AC TA
202799 TG * 10 18/20 TG TG GG TG TG TG TG AG TG TG
203606 CA * 16 30/32 CA CA CA CA AA CA CA CA AA CA CA CA CA CA CA CA
207810 GT * 16 29/32 GT GT GT GT GT GT TT TT GT GT GT GT GT GT GT GC
208085 TA * 14 26/28 TA TA CA TA TA TA CA TA TA TA TA TA TA TA
208622 AT * 10 18/20 AT AA AT AT AA AT AT AT AT AT
209724 CA * 11 20/22 CA CA CA CA CA CA CA CA CA TA CT
213488 TG * 12 23/24 TG TG TG TG TG TG TG AG TG TG TG TG
213635 TC * 11 20/22 TC CC TC TC TC TC TC TC TC TC TT
213658 CT * 11 20/22 CT CC CT CC CT CT CT CT CT CT CT
214268 TA * 10 18/20 TA TA TA TA TG TA TA TA TG TA
216221 TA * 11 20/22 TA TA TA TA TA TA TA TA AA TG TA
216476 AT * 12 22/24 AT AT AT AT AT AT AT AT AT GT TT AT
224440 AT * 10 18/20 AT AT GT AC AT AT AT AT AT AT
224892 AC * 12 23/24 AC AA AC AC AC AC AC AC AC AC AC AC
229919 CA * 12 22/24 CA CA CT CA CA CA CA CA CA CA CC CA
229970 AC * 11 20/22 AC GC AC AC AG AC AC AC AC AC AC
230309 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TA AG TG
230631 TG * 15 28/30 TG TG TG TG TG TG TG TG TG TG TG CG TG CG TG
233961 TG * 10 18/20 TG TA TG GG TG TG TG TG TG TG
234139 CA * 11 20/22 CA CC CG CA CA CA CA CA CA CA CA
234168 AC * 12 22/24 AC CC AC AC AC AC AC AC AC AC AC TC
235832 TG * 11 21/22 TG TT TG TG TG TG TG TG TG TG TG
235986 CA * 10 18/20 CA TA TA CA CA CA CA CA CA CA
240697 CA * 11 20/22 CA CA CA CA CA CA TA CA CA CG CA
244143 TG * 12 22/24 TG TA TG TG TG TG TG TG TG CG TG TG
245367 TG * 11 21/22 TG TG TG TG TG TG TG TG TG TG TC
247136 GT * 13 24/26 GT GT GT GT GT GT GT GT GC GA GT GT GT
247774 CA * 12 23/24 CA CA CA CA CA CA CA CA CA CA CG CA
248900 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TA AG
251454 AC * 11 20/22 AC AC CA AC AC AC AC AC AC AC AC
252430 CA * 11 20/22 CA CA CA CG CA CA CA CG CA CA CA
253336 AC * 13 24/26 AC AC AC GC AC AC AC AC AC AC AC AC AG
258220 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CG CA AA
260986 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC AC AT GC
263703 AC * 17 31/34 AC AC AC AC AC AC AA AC AC AC AC TC AC AC TC AC AC
265757 CA * 17 31/34 CA CA CA CA CA CG CA CA CA CA CA CA CA CA CC CA GA
280695 CA * 13 24/26 CA CT CA CA CG CA CA CA CA CA CA CA CA
282037 TA * 12 22/24 TA TA TA CA TA TA TG TA TA TA TA TA
282355 CA * 10 18/20 CA CA CA CA CA CG AA CA CA CA
285385 AT * 13 24/26 AT AT AT TT AT GT AT AT AT AT AT AT AT
286164 TG * 12 22/24 TG TT TG TG TG TG TG TG TG TG TG CG
290392 TA * 11 20/22 TA TA CA TA TA TA TA TT TA TA TA
296614 AT * 15 27/30 AT AT AT GT AT AT AT AT AT AT AT GT AT AT CT
-----------------------------------------------------------------------------------------
Total sequence length......................... 302357
Total number of repeats detected.............. 91
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 9 12 2 1 12 17 13 5 3 5 0 0
15 to 19 1 0 0 0 1 4 4 1 0 0 0 0
20 to 24 0 0 0 0 0 0 1 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 10 12 2 1 13 21 18 6 3 5 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
10 AT + 12 TA = 22
2 AG + 1 GA + 5 CT + 3 TC = 11
6 GT + 18 TG + 21 CA + 13 AC = 58
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7290831|gb|AE003442.1|AE003442 Drosophila melanogaster genomic scaffold 142000013386054 section 26 of 35, complete sequence
Position Repeat Coverage Repeat
1990 CA * 15 27/30 CA CA CA CA CA GA CA CA AA CA CA CA CA CA CG
2140 TG * 14 26/28 TG TG TA AG TG TG TG TG TG TG TG TG TG TG
2221 AT * 13 24/26 AT AT AT AT AT AT AT AT GT AT AT AT AA
6115 TG * 11 20/22 TG AC TG TG TG TG TG TG TG TG TG
24797 TG * 12 22/24 TG TG CG TG TG TG TG TT TG TG TG TG
27369 CA * 10 18/20 CA CA CA CA CA CA CA CA TT CA
32056 AC * 10 19/20 AC AC AC AC AC AT AC AC AC AC
37973 AT * 12 22/24 AT CT AT AT AT AT AT AT AT AT AT TT
38158 AT * 11 20/22 AT AC AT AT AT AT AT AT AT AT AC
41129 AC * 16 29/32 AC AC GC AC AC AC AC AC AC AC AC AC TC AC TC AC
45909 GT * 10 19/20 GT GT GT GT AT GT GT GT GT GT
46283 TA * 11 20/22 TA TG TA TA TA CA TA TA TA TA TA
46541 AT * 11 20/22 AT AT AC AT AT AT AT AT AT AA AT
47314 AT * 17 32/34 AT AT AT AT AT AT AT AT GT AC AT AT AT AT AT AT AT
47510 AC * 10 18/20 AC AC AC AC GC GC AC AC AC AC
55376 CA * 13 24/26 CA TT CA CA CA CA CA CA CA CA CA CA CA
58768 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TG TG AG TG GG GG
66086 TG * 12 23/24 TG TG TG TG TT TG TG TG TG TG TG TG
75389 CA * 11 20/22 CA CA GA CA CA CA CA CA CA CA CC
115229 CA * 11 20/22 CA CA CA CA CA CG CA CA CA CA GA
118117 GT * 10 18/20 GT GT GA GT GT GT GT GT TT GT
120636 TG * 10 18/20 TG TG TG TG TG CG TG CG TG TG
120952 AT * 11 20/22 AT AT AT AT AA AT AT AT AT AT CT
125486 CA * 10 18/20 CA CA CA CA CA CA CG CA CT CA
132735 CA * 10 18/20 CA CA CG CA CA CA TA CA CA CA
139360 TG * 11 20/22 TG TT TG TG TC TG TG TG TG TG TG
139503 AC * 10 18/20 AC AC AC AC AC AC AC AC AA AA
148032 TA * 10 18/20 TA TA TA CA TA CA TA TA TA TA
153891 AG * 11 20/22 AG AT AG AG AG AG GG AG AG AG AG
155246 TG * 13 25/26 TG TG TG TG TG TG TG TG TG TG TG TG CG
171430 AT * 11 20/22 AT AT AT AT AT AT AT AT AT CG AT
173635 CA * 13 24/26 CA CA AA CA CA CA CA CA CA CA CA CA GA
173723 CA * 13 24/26 CA CA CA CA CA CT CA CA CA CA CA CG CA
175510 CA * 13 24/26 CA CA CA CA CA CG CA CA CA CA TA CA CA
180927 CA * 13 24/26 CA AA CA CA CA CA CA CA CA CA CA CT CA
192684 CA * 10 18/20 CA GC CA CA CA CA CA CA CA CA
199585 TG * 10 18/20 TG TG TG TG TG TG TG TG CG TT
205236 TG * 11 20/22 TG AG TA TG TG TG TG TG TG TG TG
206138 CA * 18 33/36 CA CA CA CA CA CA CA CA CA CA TA CA CA CA CA CA GG CA
207489 AC * 20 36/40 AC AC AC AG AC AC AC AC AC AC AC AC AC AC AC AC AC AG AT GC
220743 CA * 17 31/34 CA CA CC CA CA CC CA CA CA CA CA CA CA CA CA TA CA
221159 TG * 18 33/36 TG TA TG TG TG CG TG TG TG TG TG TG TG TG TG TG TG TA
221420 CA * 16 29/32 CA CA CG CA CA CA CA CA CA CA CA CA CA CA CA AG
221460 CA * 10 18/20 CA CA GA AA CA CA CA CA CA CA
223256 AT * 10 18/20 AT AT AT AT AT AT AT AT AT TC
223515 CA * 10 18/20 CA CA CA CA CA TA CA CG CA CA
233488 AT * 13 25/26 AT AT AT AT AT AT AT AT AT AT AT AT GT
233797 TA * 10 18/20 TA TA TA TA TA TA TA TA TG TT
234673 GT * 13 24/26 GT GT GG GT GT GT GT GT GT GC GT GT GT
235033 GT * 13 25/26 GT GT GT GT GT GT GT GT GT GT GT GT AT
241571 GA * 10 18/20 GA CA CA GA GA GA GA GA GA GA
243457 TA * 21 38/42 TA GA TA TA TA TA TA TA TA TA TC TA TA TA TA TA TA CA TA CA TA
244180 GA * 12 23/24 GA GC GA GA GA GA GA GA GA GA GA GA
250289 CA * 13 24/26 CA CC TA CA CA CA CA CA CA CA CA CA CA
252004 AC * 10 18/20 AC GA AC AC AC AC AC AC AC AC
252701 GA * 10 18/20 GA GA GA GG GA GA GA GA GC GA
253713 AG * 11 20/22 AG GG AG AG AG AG AG TG AG AG AG
255384 AC * 10 19/20 AC AC AC AC AC GC AC AC AC AC
258172 GT * 10 18/20 GT GT GT GT GT GT GT TT GT GA
265334 TG * 17 31/34 TG CG TG TG TG TG TG TG TG TG TG TG TG TG TA TG TA
275389 AT * 10 18/20 AT AT AT GT AT AT AT AT AT AC
275460 TC * 10 18/20 TC CC TC TC TC TC TC GC TC TC
276238 AT * 15 27/30 AT GT AT AT AT AT AT CT AT AT AT AT AT AT AC
276401 AC * 18 34/36 AC TC AC AC AC AC AC AC TC AC AC AC AC AC AC AC AC AC
281747 CA * 10 18/20 CA CA CA CA CA CA GA CA CA AA
281777 AC * 10 18/20 AC AC AC AC AC AC AC TC AC AG
282402 AT * 10 18/20 AT AT AT AT AT AT AT AT AT NN
282471 TG * 10 18/20 TG AG TG TG TG TG TG TG TG TC
282747 AG * 13 25/26 AG AG AG AG AG AG AG AG AG AG AG AG AA
283889 TA * 19 35/38 TA TG TA TA TA TA TA TA TA GA TA TA TA TA TA TA TA TA TT
285798 AG * 12 22/24 AG AG AG AG AG AG AG AG AG AG CC AG
286145 TG * 16 29/32 TG TT TC TG TG TG TG TG TG TG TG TG TG TG TG CG
288462 CA * 10 18/20 CA CA CA CA CA CA CA CT CG CA
295206 TC * 12 22/24 TC CC TC TC TC TC TC TC TC TC TA TC
296032 TG * 14 26/28 TG TG TG TG TG TG TG TG TG GA TG TG TG TG
297547 TG * 13 24/26 TG CG TG TG TA TG TG TG TG TG TG TG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 306267
Total number of repeats detected.............. 76
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 10 3 4 3 6 16 12 5 2 0 0 0
15 to 19 2 1 0 0 2 4 4 0 0 0 0 0
20 to 24 0 1 0 0 1 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 12 5 4 3 9 20 16 5 2 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
12 AT + 5 TA = 17
4 AG + 3 GA + 0 CT + 2 TC = 9
5 GT + 16 TG + 20 CA + 9 AC = 50
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7290819|gb|AE003441.1|AE003441 Drosophila melanogaster genomic scaffold 142000013386054 section 25 of 35, complete sequence
Position Repeat Coverage Repeat
4933 AT * 13 24/26 AT AC AT AT GT AT AT AT AT AT AT AT AT
23957 AG * 20 36/40 AG AG AA AG AG AG AG AG AG AG AG AG AG AG AG AA AG AC AG CG
31000 GA * 11 20/22 GA GA GA GA GA GC GA GA GA GA GC
31763 AT * 10 18/20 AT AT AA AT AA AT AT AT AT AT
48800 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TG TG TG TT TT TA
59644 AG * 15 28/30 AG AG AG AG AG AG AG AG AG AG AA AG AG AG AA
75872 TA * 11 20/22 TA CA TA TA TA TG TA TA TA TA TA
83463 GT * 12 22/24 GT GT GT GT GT GT GT GT AT GT GT GG
101256 TG * 10 18/20 TG TG TG CG TG TG TG TG AG TG
104824 TA * 10 18/20 TA AA TA TA TA TA TA TG TA TA
112783 AC * 10 18/20 AC AC AC AG GC AC AC AC AC AC
113350 CT * 10 18/20 CT TT CT CA CT CT CT CT CT CT
114562 TG * 11 20/22 TG TG TG TG TG TG TG TT TA TG TG
114665 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AC AA AT
115412 GA * 11 20/22 GA GA GA GA GC GA GA GA GA GA GG
118163 TA * 10 18/20 TA TA TA TA TA TA TA TA TT TG
119058 TG * 13 25/26 TG TG TG TG TG TG TG TG TG TG TG TT TG
122807 CT * 10 19/20 CT GT CT CT CT CT CT CT CT CT
123025 AT * 10 18/20 AT AT AC AT AT AT GT AT AT AT
127411 TG * 10 18/20 TG CA TG TG TG TG TG TG TG TG
145626 AC * 11 20/22 AC AA AT AC AC AC AC AC AC AC AC
146105 CA * 18 33/36 CA CG CA CA CA CA CA CA TA CA CA CA CA CA CA CA CA CG
147774 TA * 14 26/28 TA TA TA TA TA TA TA TT TA TA CA TA TA TA
152508 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT GT TG
153280 CA * 13 24/26 CA CA CA CT CA CA CA CA CA CA CA CA CC
154176 AT * 13 24/26 AT AT TT AT AT AT AC AT AT AT AT AT AT
169525 TG * 10 19/20 TG TG TG TG TG TG TG TG TG TA
169545 AT * 11 20/22 AT CT AT AT AT AT AT AT AT AT TT
170663 TA * 12 22/24 TA TA TG TA TA TG TA TA TA TA TA TA
176644 CT * 26 47/52 CT GT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT TT CT CT GT TC
178405 CT * 12 22/24 CT CT CC CT CT CT TT CT CT CT CT CT
179155 AT * 10 18/20 AT AT AT AT AT GT AT AT GT AT
180836 TG * 10 19/20 TG TG TC TG TG TG TG TG TG TG
182561 CT * 12 23/24 CT CT AT CT CT CT CT CT CT CT CT CT
188497 AG * 12 22/24 AG AG CG AG AG AG AG AG AG GG AG AG
189354 AC * 11 21/22 AC AC AC AC TC AC AC AC AC AC AC
190232 AC * 13 24/26 AC AC AC AA AC AC AC AC AC AC AC AT AC
195247 CT * 10 18/20 CT CT CC CG CT CT CT CT CT CT
225216 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AT CC
228810 TG * 12 22/24 TG TG TG TG TG TG TG CG TG TG TG CG
229089 GT * 11 20/22 GT GT GT GC AT GT GT GT GT GT GT
235014 AT * 11 20/22 AT AT AC AT AT AT AT AT AT AT TT
240504 AG * 12 22/24 AG AG AG AG AG AG AG AG AG AG CG AT
241635 AT * 10 18/20 AT AA AT AT AT AT AT GT AT AT
243374 TC * 11 20/22 TC TC TC TC TC TG TC TC TC CC TC
243398 CA * 11 20/22 CA CA CA CA CA CA CT CA CA CA TA
244778 AC * 11 20/22 AC AC AC AT AC AC AC AC TC AC AC
246640 GT * 10 18/20 GT GT GT GT GG GT AT GT GT GT
255238 GT * 10 18/20 GT GT GC GT CT GT GT GT GT GT
255259 TG * 12 22/24 TG TG TG TG TG TG TG TG AG TG TG CG
255780 AG * 11 20/22 AG AG AG AG AG AG AA GG AG AG AG
256114 TG * 12 22/24 TG CG AG TG TG TG TG TG TG TG TG TG
256245 CA * 10 18/20 CA CA CA CA CA AA CA CA CA CG
258349 TA * 10 18/20 TA TA GA TA TA TA AA TA TA TA
260390 TG * 16 29/32 TG CG TG TG TG TG TG TG TG TG TG TG TG TG AG GG
261224 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG GC
266617 TA * 10 18/20 TA TA TA TA TA TA TA TA TA AT
266941 TG * 10 19/20 TG GG TG TG TG TG TG TG TG TG
270516 CA * 23 42/46 CA CA CA CA AA CA CA CA CA CA CA CA CA CA CA CA CA CA CA GC CA CA AA
280512 TG * 11 20/22 TG TG AG AG TG TG TG TG TG TG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 285272
Total number of repeats detected.............. 60
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 8 7 3 2 7 3 12 5 1 5 0 0
15 to 19 0 0 1 0 0 1 2 0 0 0 0 0
20 to 24 0 0 1 0 0 1 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 1 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 8 7 5 2 7 5 14 5 1 6 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
8 AT + 7 TA = 15
5 AG + 2 GA + 6 CT + 1 TC = 14
5 GT + 14 TG + 5 CA + 7 AC = 31
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7290801|gb|AE003440.1|AE003440 Drosophila melanogaster genomic scaffold 142000013386054 section 24 of 35, complete sequence
Position Repeat Coverage Repeat
13548 TG * 10 18/20 TG TG TG TG TG TG TG TG TG GT
24353 CA * 11 20/22 CA CA TA CG CA CA CA CA CA CA CA
24669 AC * 11 21/22 AC AC TC AC AC AC AC AC AC AC AC
24700 CT * 10 18/20 CT CT CT CT CC CT CT CT CG CT
29587 AT * 11 20/22 AT TT GT AT AT AT AT AT AT AT AT
37936 TA * 11 20/22 TA TA TC TA TA TA TA TA TA TA TC
44289 TG * 10 18/20 TG TG TG TG TG TG TG TT TG TC
51301 TG * 10 18/20 TG TG TG TG CG TG TG TC TG TG
51323 TG * 11 20/22 TG TG TG TG TG TG TG TG AG AG TG
53652 GA * 20 36/40 GA GA AA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GT TC
54753 GA * 10 18/20 GA GA GA GG GA GA GA GG GA GA
71025 CA * 12 22/24 CA CA AA CA CA CA CA CA CA CA CC CA
73331 AT * 11 21/22 AT AT CT AT AT AT AT AT AT AT AT
73355 AT * 10 18/20 AT AT AT AT AT AT AT AT AT GG
74302 AC * 10 18/20 AC AC AC AC AC GG AC AC AC AC
74571 TG * 11 21/22 TG TA TG TG TG TG TG TG TG TG TG
75580 CA * 25 45/50 CA CG CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA TA CA CG CC CC
76995 CA * 11 20/22 CA CA CA CC CA CA CA CA CA CA CT
77710 TG * 20 36/40 TG TG TT TG TG TA TG TG TG TG TG TG TG TG TG TG TG TG TG GA
77900 AC * 10 18/20 AC AC AA AC AC AC AC AC AC AG
85166 GT * 12 22/24 GT GC GT GT GT GT GT GT GT GT GG GT
85555 AC * 10 18/20 AC AC AC AC AC AC AT AC AC AT
89742 AC * 11 20/22 AC AA AC AC AC AC AC AC AC AC AT
92209 GA * 13 24/26 GA CA GA GA GA GA GA GA GA GA GA GA GC
94228 AC * 16 29/32 AC AC AC AC AC AC AC AC AC AC AC AC AG AC AA AA
98360 GT * 10 18/20 GT GT GT GT GT TT GT GT GC GT
99349 AC * 12 22/24 AC AC AC AC TA AC AC AC AC AC AC AC
99870 TG * 15 27/30 TG GG TG TG TG TG TG TG TG TG TG TG TG GG CG
100159 GT * 16 29/32 GT GC GT GC GT GT GT GT GT GT GT GT GT GT GT GC
104472 CA * 16 30/32 CA CA CA CA CA GA CA CA CA CA CA CA CA CA CA CG
107739 AT * 10 18/20 AT AT AT AT AT AT AC AT AC AT
119660 TG * 11 20/22 TG TA TG TG TG TG TG TG TG TG TT
122080 CA * 10 18/20 CA CA CA CA CA CA CA CA TA CT
122146 TG * 12 22/24 TG CG TG TG TG TG TG TG AG TG TG TG
122624 GT * 18 33/36 GT CT AT GT GT GT GT GT GT GT GT GT GT GT GT GT GA GT
130594 AG * 10 18/20 AG AG AG AG AG TG TG AG AG AG
130704 TG * 13 24/26 TG CA TG TG TG TG TG TG TG TG TG TG TG
131125 TA * 10 18/20 TA TA TA TA TA TG TA CA TA TA
135351 GT * 10 18/20 GT GT GT GT GC GT GT GT GT AT
139071 AC * 18 33/36 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AA CA
149316 TC * 13 25/26 TC TC TC TC TC TC TC TC TC TC TC TC TG
152242 AT * 12 22/24 AT AG AT AT AT AT AT AT AT AT AT TT
157553 TA * 10 19/20 TA GA TA TA TA TA TA TA TA TA
197958 GT * 10 18/20 GT GT GT GT GT GT GT GC GT TT
198523 CA * 10 19/20 CA CA CA CT CA CA CA CA CA CA
199060 TA * 10 19/20 TA TA TA TA TA TA TA TG TA TA
211706 GT * 10 19/20 GT GT GT GT GT GT GT GT GT GG
214601 GT * 12 22/24 GT GT GT TC GT GT GT GT GT GT GT GT
218216 CA * 17 31/34 CA CA CG CA CA CA CA CA CA CA CA CA CA CA CA CT CG
244562 AT * 10 18/20 AT AT AC AT AT AT AT GT AT AT
245150 TG * 13 24/26 TG TG TG AG TG TG TG TG TC TG TG TG TG
277087 AC * 11 20/22 AC AC AT AC AC AC AC AC AC AC TC
282268 AC * 12 23/24 AC AC AC AC AC AC AC AC AC AA AC AC
286353 TA * 11 21/22 TA TA TG TA TA TA TA TA TA TA TA
293333 GT * 10 18/20 GT GT GT AT GT GT GT GT GT GG
294018 AG * 13 24/26 AG AG AG AG CG AG AG AG AG AG AG AG AT
294174 CA * 13 24/26 CA CA CA TA CA CA CA CA CA CA CA CA TA
295880 AT * 11 20/22 AT AT AA AT AT AT AT AT AT AA AT
296028 AC * 10 18/20 AC AC AC AC AC AC AC AT AC AA
296192 TG * 12 22/24 TG GG TG TG TG TG TG TG TG TG TG TT
302102 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AC GT
313876 AC * 10 19/20 AC AA AC AC AC AC AC AC AC AC
314421 GT * 13 24/26 GT GT GT GT GT GT GT GT CT GT TT GT GT
322179 CA * 10 18/20 CA CA CA CA CG CA CT CA CA CA
322493 TG * 12 22/24 TG TC TG TG CG TG TG TG TG TG TG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 342068
Total number of repeats detected.............. 65
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 8 5 2 2 10 7 11 8 1 1 0 0
15 to 19 0 0 0 0 2 2 1 2 0 0 0 0
20 to 24 0 0 0 1 0 0 1 0 0 0 0 0
25 to 29 0 0 0 0 0 1 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 8 5 2 3 12 10 13 10 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
8 AT + 5 TA = 13
2 AG + 3 GA + 1 CT + 1 TC = 7
10 GT + 13 TG + 10 CA + 12 AC = 45
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7290764|gb|AE003439.1|AE003439 Drosophila melanogaster genomic scaffold 142000013386054 section 23 of 35, complete sequence
Position Repeat Coverage Repeat
140 TG * 12 23/24 TG TG TG TG TG TG TG TG TG TG TG TT
3934 TG * 20 36/40 TG TG TG TG TG TG TG CG AG TG TG TG TG TG TG TG AG TG TG TT
14515 CT * 10 18/20 CT TT CT CT CT CT CT CT CT TT
18050 TG * 10 18/20 TG TA TG TG TG TG TG TA TG TG
20136 AC * 13 24/26 AC AC AC AC GT AC AC AC AC AC AC AC AC
23334 GT * 13 24/26 GT GT GC GT GT GT GT GT GT GT GT GT GC
23711 CA * 12 22/24 CA CG CA GA CA CA CA CA CA CA CA CA
27025 TA * 10 18/20 TA TA TG TA TA TA CA TA TA TA
29575 GT * 15 28/30 GT GT GT GT GT GT GT GT GT GT GT GT GT GA GA
32612 TG * 13 25/26 TG AG TG TG TG TG TG TG TG TG TG TG TG
35155 AC * 10 18/20 AC AT AA AC AC AC AC AC AC AC
35665 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA AA CT
35953 CA * 13 24/26 CA CA CA AA CA CA CA CA CA CA CA CA GA
43383 CA * 10 19/20 CA CA CG CA CA CA CA CA CA CA
48505 TG * 22 41/44 TG TG TA TG TG AG TG TG TG TG TG TG TG TG TG TG TG TG TG TG AG TG
50805 GT * 20 36/40 GT GT GC GT GT GT GT GT GT GT GT GT GT GT GT GT GT CT GT CG
51049 GT * 11 20/22 GT GC GT AT GT GT GT GT GT GT GT
51072 TG * 10 18/20 TG TG TG TG TT TG TG TG TA TG
52872 AC * 12 22/24 AC AT AC AT AC AC AC AC AC AC AC AC
61182 TA * 10 18/20 TA TA TA CA TG TA TA TA TA TA
64910 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TA TG TC
73807 CA * 10 18/20 CA CA CA CA CA CA CA CA CA AG
78760 CT * 16 30/32 CT CT CT CT CT CT CT CT CT CT CT CT CG CT CG CT
84524 TG * 16 30/32 TG TG TG CG TG TG TG TG TG TG TG TG TG TG TG GG
85633 TG * 12 22/24 TG TG TG TG TG TC TC TG TG TG TG TG
86865 TG * 11 20/22 TG TG TG TG TG TG TG TG TA TG AG
88609 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA CT GA
89686 CA * 11 20/22 CA CA CA GA CA CA CA GA CA CA CA
89920 AC * 16 29/32 AC AC GC AC AC AC AC GC AC AC AC AC AC AC GC AC
93016 AC * 16 30/32 AC AC AC TC AC AC AC AC AC AC AC AC AC AC AA AC
93594 CA * 17 32/34 CA CA CA CA CA CA CA CA CA CA CA CA TG CA CA CA CA
94456 GT * 16 29/32 GT GT GT GT GT GT GT GT GA GT GT GA GT GT TT GT
94860 TG * 18 33/36 TG TA CG TG TG TG TG TG TG TG TG TG TG TG TG TG AG TG
98166 CA * 13 24/26 CA AA CA CA CA CA CA CA CA CA CA GA CA
98228 AC * 12 22/24 AC AC AC AC TC AC AC AC AC GC AC AC
98942 TG * 16 29/32 TG TG TG TG TG TG TG TG TG TG TG TG TG TG CT TA
99890 CA * 17 31/34 CA AC CA CA CA CA CA CA CA CA CA CA CA CA CA CA GA
103045 CA * 10 18/20 CA CA CA CA CA CA CA GA TA CA
105590 GT * 13 24/26 GT GC CT GT GT GT GT GT GT GT GT GT GT
110009 CA * 12 22/24 CA CA CA CA CA CA CA CT CA TA CA CA
110217 TG * 11 20/22 TG TT TG TG TG TG CG TG TG TG TG
126364 GA * 11 20/22 GA GA GA GA AA GA CA GA GA GA GA
139679 CT * 10 18/20 CT CT CG CT CT CA CT CT CT CT
141706 AG * 10 18/20 AG AG AG AG AG AG AG AA AG AA
146806 GA * 16 30/32 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GC AA
161493 AT * 10 18/20 AT TT AT AC AT AT AT AT AT AT
161514 TA * 10 18/20 TA TA TA TA TA AA TA TA TA AA
161535 AT * 10 18/20 AT TT AT AT AT AA AT AT AT AT
166288 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TA TA
178585 AT * 13 24/26 AT AC AT GT AT AT AT AT AT AT AT AT AT
179552 AT * 13 24/26 AT TT AT AT AT AT AT AT AT AT GT AT AT
192014 TG * 10 18/20 TG TG TG TG TG TG TG TG TG GC
193631 AT * 12 23/24 AT AT AA AT AT AT AT AT AT AT AT AT
201917 TG * 20 37/40 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG CG TA GG
202651 TG * 10 18/20 TG TG TG TG TG TG TG TA TG TT
205541 CA * 11 20/22 CA CA CA CA CA CA CA CA CG CA GA
210412 GT * 10 18/20 GT GA GT GT GT TT GT GT GT GT
217099 AT * 10 18/20 AT AT AT AC AT AT TT AT AT AT
224447 AT * 13 24/26 AT AT AT AT AT AT AT AT AT AT GT AT GT
237512 TA * 11 20/22 TA TA AA TA TA TA TA TA TA TA TT
239573 CA * 18 34/36 CA CA CA CA CA AA CA CA CA CA CA CA CA CT CA CA CA CA
240784 TG * 10 18/20 TG TG TA TG TG TG TG TG TG TA
247252 TA * 20 36/40 TA TA TA TA TA TA TA CA TA TA TA TA TT TA TA TA TA AA TA TG
249251 GT * 11 20/22 GT TT AT GT GT GT GT GT GT GT GT
254628 AT * 10 18/20 AT GT AT GT AT AT AT AT AT AT
259835 TA * 11 20/22 TA TA TA TA TA TA TA TA TG TA TG
263704 TA * 10 18/20 TA AA TA TA TA TA TG TA TA TA
268005 GT * 21 38/42 GT GT GT GT GT GC GT GT GT GT GT GA GT GT GT GT GA GT GT TT GT
272241 TA * 11 20/22 TA CA TA TA TA TA CA TA TA TA TA
274460 TG * 12 22/24 TG TG TG TG TG TA TG TG TG TG GG TG
274644 CA * 17 31/34 CA CC CT CA CA CA CA CA CA CA CA CA CA CA AA CA CA
276076 CA * 11 21/22 CA CA CA CA CA CA CA CA CA TA CA
278632 AT * 14 26/28 AT AT AT AT AT AT AT AT AT AC AT AT AG AT
280822 AC * 10 18/20 AC AC GC AC AC GC AC AC AC AC
281354 TG * 16 30/32 TG TG CG TT TG TG TG TG TG TG TG TG TG TG TG TG
281545 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TG TT TG TG TG GC
283200 AT * 10 18/20 AT AT AT AT AT AA AT AC AT AT
291846 AC * 16 29/32 AC AC AC AC AC AC AC AC AC AC AC AC AC TC GC GC
292052 TA * 10 18/20 TA TA TA TG TA TA TA TA TA AA
293375 TG * 16 29/32 TG TG TG TG TG TG TG TG TG TG TG TG TA TG TA TT
300115 TG * 11 20/22 TG TG TG TG CG TG TG TG TG TG AG
308030 CA * 11 20/22 CA AA CA CA CA CA CT CA CA CA CA
308054 CA * 18 33/36 CA CA CA CA CT CA CA CA CA CT CA CA CA CA CA CA CA CC
308623 TG * 10 19/20 TG TG TG TG TG TG TG TG TG AG
308807 CA * 10 18/20 CA CA CA CG CA CA CC CA CA CA
309394 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TA CG
310664 AC * 17 32/34 AC AC AC AC AC AC AC AC AC TC AC AC AC AC AC AC AT
310875 TC * 10 18/20 TC TC TC AC TC TT TC TC TC TC
311016 GT * 15 27/30 GT GA GT GT GT GT GT GT GT GT GT GT GT AT AT
311210 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG AG GG
312683 TG * 23 42/46 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG AG CA AG
315844 AT * 10 18/20 AT AT AT AT AT AT AT GT AT GT
316248 AC * 11 20/22 AC TA AC AC AC AC AC AC AC AC AC
317064 TA * 12 22/24 TA TA TA TA TC TA TA TA TA AA TA TA
317492 CA * 10 18/20 CA CA CA CA CA GG CA CA CA CA
318594 TG * 12 22/24 TG TT TG TG TG TG TC TG TG TG TG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 328089
Total number of repeats detected.............. 96
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 11 9 1 1 6 15 18 5 1 2 0 0
15 to 19 0 0 0 1 4 5 6 3 0 1 0 0
20 to 24 0 1 0 0 0 0 4 2 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 11 10 1 2 10 20 28 10 1 3 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
11 AT + 10 TA = 21
1 AG + 2 GA + 3 CT + 1 TC = 7
10 GT + 28 TG + 20 CA + 10 AC = 68
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7290724|gb|AE003438.1|AE003438 Drosophila melanogaster genomic scaffold 142000013386054 section 22 of 35, complete sequence
Position Repeat Coverage Repeat
1710 AT * 12 22/24 AT AT AT AT AT AG TT AT AT AT AT AT
8368 AT * 11 20/22 AT AT AC AT AT AT AT AC AT AT AT
10510 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CA TC
45948 AT * 12 22/24 AT AT AT AC AT AC AT AT AT AT AT AT
46686 AT * 10 18/20 AT AT AT AT AT AT AG AT AT AC
57732 AT * 10 18/20 AT AT AT AT AT AT GT AC AT AT
61339 TG * 11 20/22 TG TG TG TG TG TG TG TT TG TG TC
68670 TA * 13 25/26 TA TA TA TA TA TA TA TA AA TA TA TA TA
71204 AC * 18 33/36 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AT AT AA
74869 TA * 11 20/22 TA TA TG TA TA TA TA TT TA TA TA
77282 CA * 12 22/24 CA CA CA CA CA CA CA TA CA CA CA GA
82469 TG * 18 33/36 TG CG TG CG TG TG TG TG TG TG TG TG TG TG TG TG CG TG
84138 CA * 17 31/34 CA CA CA CA CA CA CA CA CA CA CA CA CA CA TG CA CG
101012 AT * 10 18/20 AT AT AA AT AT AA AT AT AT AT
102147 CA * 10 18/20 CA CA CA CA CA CA CA AA GA CA
103090 GA * 13 24/26 GA GA GC GA GA GA GA GA GA GA GC GA GA
111309 AC * 11 21/22 AC AC AC AC AC AC AC AC AC AT AC
111626 TA * 11 20/22 TA TA TA TA TA TA TA TA TA TC CA
112582 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AC CT
112958 TA * 10 18/20 TA TA TA CA AA TA TA TA TA TA
116618 TG * 17 32/34 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG GG CG
117202 CT * 11 20/22 CT CT CT CC CT CT GT CT CT CT CT
121975 GT * 10 18/20 GT GA GT GT GT GT GC GT GT GT
122638 TG * 10 19/20 TG TG AG TG TG TG TG TG TG TG
126617 AT * 14 26/28 AT AT AT AA AT AT AT AT AT AT AT AT AT AG
127536 TA * 11 21/22 TA TA TA AA TA TA TA TA TA TA TA
128842 AT * 10 18/20 AT AT AC AT AT AT AT AT AT AA
129072 TC * 16 29/32 TC TC TC TC TC TC TC TC TC TC AC TG TC TC TT TC
129118 CT * 13 24/26 CT CT GT CT CT CT CT CT CT CT CT GT CT
129896 CT * 11 20/22 CT CT CT CT CT CT CG CC CT CT CT
130456 CT * 21 38/42 CT CT CT CT CT CT CT CT CT CT CT CT CG CT CT TT CT CT CA CA CT
130942 TA * 13 24/26 TA TA TA TA TA TA TA TA AA TA TA TA GA
131361 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GT GT GT AC
134223 AT * 10 18/20 AT AT AT AT TT TT AT AT AT AT
151570 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AC GA AC
153978 TA * 17 31/34 TA TG TA TA TA TA TA TA TT TA TA TA TA TA TT TA TA
154574 AC * 10 18/20 AC AC AC AC AC AC AC AC GC GC
156110 AT * 18 33/36 AT AT AT AT AT AT AC AT AT GT AT AT AT AT GT AT AT AT
156886 GT * 13 24/26 GT GT GT GT GT GT CT GT GT GT GT GT GA
157151 AT * 15 27/30 AT AT AT AT AT AT GT TT AT AT AT AT AT AT AA
159706 CA * 10 19/20 CA CA CA CA CA CG CA CA CA CA
162836 CA * 12 22/24 CA CA CA CA GG CA CA CA CA CA CA CA
177465 TA * 10 18/20 TA TA TA TA TA TA TA TA TG TT
177793 CA * 15 28/30 CA CA CA CA CA CA CA CA CA CA CA CA CA AG CA
179273 CA * 11 20/22 CA CA CA CA CA CA CA CA AA CA CC
203765 CA * 11 21/22 CA CA CA CA CA CA CA CA GA CA CA
205680 AT * 11 20/22 AT AT AT AT AT AC AT AT AT AC AT
207777 AT * 11 20/22 AT AT AT AT AT AT TT AT AG AT AT
216748 TG * 11 20/22 TG TG TT TG TG TG TG TG TG TC TG
219069 TG * 10 19/20 TG TG TG TG TG TG TG CG TG TG
236618 TA * 10 18/20 TA TA TA TA TA AA CA TA TA TA
255597 AT * 10 18/20 AT AT AT AT AT AT AT AA AT AC
256348 TG * 13 24/26 TG TG CG TG AG TG TG TG TG TG TG TG TG
273342 TA * 10 18/20 TA TA TT TA TA TA TA TC TA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 299372
Total number of repeats detected.............. 54
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 12 9 0 1 4 7 5 3 0 3 0 0
15 to 19 2 1 0 0 1 2 2 0 1 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 1 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 14 10 0 1 5 9 7 3 1 4 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
14 AT + 10 TA = 24
0 AG + 1 GA + 4 CT + 1 TC = 6
3 GT + 7 TG + 9 CA + 5 AC = 24
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7290686|gb|AE003437.1|AE003437 Drosophila melanogaster genomic scaffold 142000013386054 section 21 of 35, complete sequence
Position Repeat Coverage Repeat
90 AC * 10 18/20 AC AC AC AC AC GC AT AC AC AC
1264 CA * 10 19/20 CA CA CA CA CA CA CA CA CA CC
1288 AC * 11 20/22 AC AC AC CC AA AC AC AC AC AC AC
1402 TA * 10 18/20 TA TA TA TA TA TA TA TA AA TC
6661 AT * 15 27/30 AT AT AT GT AT GT AT AT AT AT AT AT AT AT CT
20357 TG * 12 22/24 TG TG TG TG TG TG TG TG TG CG TG CG
20494 AC * 10 18/20 AC AT AC AC AC AC AC AC AC TC
23842 TG * 10 18/20 TG TG TG CG TG AG TG TG TG TG
43776 CA * 25 45/50 CA TA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA TA GA TA GA
45898 CA * 13 24/26 CA TA CA CA CA CA CA CA CA CA CA CA CG
48096 CA * 26 47/52 CA TA CA CA CA CA CA CG CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA GA TA GA
54324 AT * 10 18/20 AT AT AT AT AT AT CT GT AT AT
67609 AT * 12 22/24 AT TT AT AT AT AT GT AT AT AT AT AT
71884 TG * 10 18/20 TG TA TA TG TG TG TG TG TG TG
73881 AC * 10 18/20 AC AC CA AC AC AC AC AC AC AC
75664 GA * 16 29/32 GA GA GA GA GA GA GA GA GA GG GA GA GA GC GA AA
79470 TG * 11 20/22 TG TG TG TG CG TG TG TG TG TG AG
82521 GT * 13 24/26 GT GA GT GT GT GT GT GT GT GT GT GT GA
86537 TG * 13 24/26 TG TG TG TG CG TG TG TG TG TG TG TG TA
93698 CA * 13 25/26 CA CA CA CA CA CA CA CA CA CA CA CA CT
103852 CT * 13 24/26 CT CT CG CT CT CT CT CT CC CT CT CT CT
106810 CT * 12 22/24 CT CC CT CT CT CT CT CT TT CT CT CT
120220 TA * 12 22/24 TA TA TA TA TA TA TA TA CA TT TA TA
121712 TA * 16 29/32 TA TA TA TA TA TA TA TA TG TA TA TG TA TA TA CA
125630 AG * 15 27/30 AG AA AG AG AG AG AT AG AG AG AG AG AG AG AA
138507 TA * 10 18/20 TA CA TA TA TA TA CA TA TA TA
140052 AC * 16 29/32 AC AC AC AC AC AC AC AC AC AC GC AC AC GC AC AG
142414 GT * 11 20/22 GT GT GT GT GT GT GT TT GT TT GT
142781 AT * 12 22/24 AT AT AT GT AT AT AT AT AT AT AC AT
144184 GT * 12 22/24 GT AT GT GT GT GT GT GT GT GT GA GT
144330 GT * 16 29/32 GT GT GT GT GT GT GT GT GT GT GT GG GT GT AT AT
144389 TG * 11 20/22 TG GC TG TG TG TG TG TG TG TG TG
144562 CA * 13 24/26 CA CA CA CA CA CA CA CA GA CA CA CG CA
144747 AC * 11 20/22 AC AC TA AC AC AC AC AC AC AC AC
153497 CA * 17 31/34 CA CA CA CA CA CA CA CA CA CG CA CT CA CA CT CA CA
153779 AG * 15 27/30 AG AG AG AA AG AG AG AG AG AG AG AG AG AG TC
154249 AC * 12 22/24 AC AC AC AC AC AC AC AT AC AT AC AC
154450 TG * 12 22/24 TG TT GG TG TG TG TG TG TG TG TG TG
155242 GT * 13 24/26 GT GT GT GT GT GT AT GT GT GT GT GT AT
156233 GT * 11 20/22 GT GT GT GT GT GT GC GG GT GT GT
156805 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG AA
163270 CA * 13 24/26 CA CA CA CA CG CT CA CA CA CA CA CA CA
168242 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA CA TG
168601 TG * 10 18/20 TG TG TG TG TG TG TG TG TG CT
170410 CA * 16 29/32 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CG AG
171176 CA * 15 28/30 CA AG CA CA CA CA CA CA CA CA CA CA CA CA CA
178018 CA * 21 38/42 CA CA CA CA CA CA CA CA CA CA CT CA CA CA CA CA TA CA TA CA TA
183151 CA * 19 35/38 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CC CA CA TT
187109 TG * 17 31/34 TG TG TG TA TG TG TG TG TG TG TG TG TG TG TG CG AG
187960 GT * 12 22/24 GT AT GT GT GT GT GT GT GT GT GT GC
188002 GT * 10 18/20 GT GT AT CT GT GT GT GT GT GT
189322 GT * 12 22/24 GT GT GT GT GT GC GT GA GT GT GT GT
192869 CA * 10 19/20 CA CA CA AA CA CA CA CA CA CA
193915 TG * 10 19/20 TG TT TG TG TG TG TG TG TG TG
195173 TG * 10 19/20 TG TG TG TG AG TG TG TG TG TG
195526 TG * 11 20/22 TG CT TG TG TG TG TG TG TG TG TG
200343 GT * 18 33/36 GT CT GT GT GT GT GT GT GT GT GT GT GT GT AT GT GG GT
200727 AC * 10 18/20 AC CC AC AC AC AC AC AT AC AC
201887 CA * 10 18/20 CA CA CA CA CA CA CA CA CA TT
202662 TA * 12 22/24 TA TA TA TA TA TA TG TA TA TA TA TG
203180 GT * 21 39/42 GT GT GC GT AT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GC
204470 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA CC CG
205652 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AA AT
216837 GT * 10 18/20 GT GT GT GT GT GT GT GT GA GA
217042 GT * 13 24/26 GT AT GT GT GT GT GT GT GT GT GT GT AT
217555 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TG TG TG GG TG GT
219857 CA * 15 27/30 CA CA CA CA CA CA CA CA CA AA TA CA CA CA AA
221210 AT * 11 20/22 AT AT AT AT AT AG AT AT AC AT AT
224802 TA * 12 22/24 TA TA TA TA TA TA TA TA CA TA CA TA
225311 GT * 13 24/26 GT GT GA AT GT GT GT GT GT GT GT GT GT
225766 GA * 17 32/34 GA GA GA AA GA GA GA GA GA GA GA GA GA GA GA GA GC
225997 TC * 10 18/20 TC TC AC TC TC TC AC TC TC TC
226562 TG * 11 20/22 TG CG TG TG TG TG TA TG TG TG TG
226586 TG * 15 27/30 TG TG TG TG TA TG TA TG TG TG TG TG TG TG AG
227101 GT * 10 18/20 GT GT GT GT GT GT GT GT TT TT
227228 AC * 15 27/30 AC AC AC AC AC AC AC AC AC AC AC AC AC AT CG
227833 GT * 12 22/24 GT CC GT GT GT GT GT GT GT GT GT GT
228919 CT * 10 18/20 CT CC CT CT CT CT CT CT CT CG
229466 AC * 20 36/40 AC AC AC AC AC AC GC AC GC AC AC AC AC AC AC AC AC AC AT AT
230157 TG * 11 20/22 TG TC AG TG TG TG TG TG TG TG TG
232147 TG * 18 33/36 TG TG TG TG TG TG TG TG TG TG TG CG TA TG TG TG AG TG
234668 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GT GT TA GT
236316 AC * 17 32/34 AC AC GC AC CC AC AC AC AC AC AC AC AC AC AC AC AC
242445 TG * 10 18/20 TG TG TG TG TG CG TG CG TG TG
253613 TG * 16 29/32 TG TG TG TG TG TG TG TG TG TG TG CG TG TG TG GC
254280 TG * 10 18/20 TG TG TG TG TG TG TG TG TG AA
254351 AC * 12 23/24 AC AC AC AC AA AC AC AC AC AC AC AC
257680 AT * 13 24/26 AT AT GT AT AT AT AT AT AT AT AC AT AT
262439 CA * 22 40/44 CA CA GT CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CG CA CA CG
263218 AC * 10 18/20 AC GC CC AC AC AC AC AC AC AC
263366 CA * 13 24/26 CA CA CA AA CA CA CG CA CA CA CA CA CA
264397 TG * 11 20/22 TG TG AG TT TG TG TG TG TG TG TG
265155 TA * 10 18/20 TA CA TA TA TA TA GA TA TA TA
267493 TG * 11 20/22 TG TG TA TG TG TG TG TG TG TG GG
271753 GT * 15 27/30 GT GT GT GT GT GT GT GT GT AT GA GT GT GT GC
274397 GA * 13 24/26 GA GC GA GC GA GA GA GA GA GA GA GA GA
277566 AC * 13 24/26 AC AT AC AC AT AC AC AC AC AC AC AC AC
278666 AC * 17 31/34 AC CC AC AC AC AC AC AC AC AC AC AC AC AC AC GC GC
283013 CA * 16 30/32 CA CA CA CA CA CA CA CA CA CA CA CA GA CA CA CC
284041 TG * 10 19/20 TG TG CG TG TG TG TG TG TG TG
286854 CA * 14 26/28 CA CA CA CA CA CA CA CA CA CA CA CA CT CT
298011 TG * 13 25/26 TG CG TG TG TG TG TG TG TG TG TG TG TG
299617 AG * 13 24/26 AG AG AG AG CG AG AG AG AG AG AG TG AG
-----------------------------------------------------------------------------------------
Total sequence length......................... 305046
Total number of repeats detected.............. 103
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 6 1 1 11 11 20 14 1 3 0 0
15 to 19 1 1 2 2 4 6 5 3 0 0 0 0
20 to 24 0 0 0 0 1 2 0 1 0 0 0 0
25 to 29 0 0 0 0 0 2 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 6 7 3 3 16 21 25 18 1 3 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
6 AT + 7 TA = 13
3 AG + 3 GA + 3 CT + 1 TC = 10
18 GT + 25 TG + 21 CA + 16 AC = 80
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7290653|gb|AE003436.1|AE003436 Drosophila melanogaster genomic scaffold 142000013386054 section 20 of 35, complete sequence
Position Repeat Coverage Repeat
7536 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TC AG TG
7658 GT * 10 18/20 GT AT GT GT GT GT GT GT GT TT
7801 TG * 12 22/24 TG TC TG TG TG TG TG TG TG TG CG TG
8375 TG * 11 20/22 TG TT TT TG TG TG TG TG TG TG TG
28677 CA * 10 19/20 CA CA CA CA CA CA CA CA CA CT
71121 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CG CG CA
76983 AT * 11 20/22 AT AT CA AT AT AT AT AT AT AT AT
86324 CT * 11 20/22 CT CT CT CT CT CT TT CT CT CT TT
86375 CT * 11 20/22 CT CT CT CT CT CT CT CT CG CT AT
121669 CT * 10 18/20 CT CT CT CT GT CT CA CT CT CT
122403 TA * 22 40/44 TA TA TA TA TA TA TA CA TA TA TA TA AA TA TA CA TA TA TA AA TA TA
130090 TA * 10 18/20 TA TA CA GA TA TA TA TA TA TA
145146 TG * 11 21/22 TG TG TG TA TG TG TG TG TG TG TG
151976 CA * 10 18/20 CA CG CA CA CT CA CA CA CA CA
153862 CA * 11 20/22 CA CA CA CA CA CA CA AA TA CA CA
177994 TG * 10 18/20 TG TG TG TG TG TG TG CG TG AG
178065 TA * 17 31/34 TA TA TA TA TA TA TA TA GA TA TA TA TA TT TA TA GA
178567 TG * 13 24/26 TG TG TG GT TG TG TG TG TG TG TG TG TG
179792 GT * 12 22/24 GT GT TT GT GT GT GT GT GT GT GT GC
183868 AT * 10 18/20 AT AT AT AT AC AT AT AT AT AA
191228 TA * 12 23/24 TA TA TA TA TA TA TA TA TT TA TA TA
191800 GA * 10 18/20 GA GA GA CA GA GA CA GA GA GA
191946 AT * 10 19/20 AT AT AT AT GT AT AT AT AT AT
192981 TA * 10 18/20 TA TA GA TA TA TA CA TA TA TA
193192 AT * 10 18/20 AT AT AT AT AT AT AT AT TT TT
193420 AG * 10 18/20 AG AG AG AA AG AG AG AG AG AT
193456 AG * 11 20/22 AG AG AG AA AG AG AG AG AG AC AG
195038 AT * 10 18/20 AT AT AT AT AT AT AT AT AT CA
198918 AT * 12 22/24 AT AT AT AT AT AT AC AT AT GT AT AT
201082 GA * 11 20/22 GA GA GA GC GA GA GA GA GA GA GG
205616 AG * 10 18/20 AG AG AG AG AG AC AG AT AG AG
206422 GT * 10 18/20 GT GT GT GT GT GT GT GT GT TG
206588 GT * 12 22/24 GT GT GT GT GT GT GT AT GT GT GT GA
206649 GT * 13 24/26 GT TT GT GT GT GT GT GT GT GT GT GT TT
207540 TA * 11 20/22 TA TA TA TA TG TA TA TA TG TA TA
207767 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GT GT GT AG
210274 TA * 15 27/30 TA TA TA TA TA TA AA TA TA TA TA TA TA TA AT
215737 CA * 11 21/22 CA CA CA CA CA CA CA CA CA CA GA
217363 CA * 10 18/20 CA CA CA CA TA GA CA CA CA CA
219362 TG * 10 18/20 TG TG TG GG TG TG TG CG TG TG
219581 CA * 13 24/26 CA CA CA CA CC CA CA CA CA CA CA CA CT
221013 CA * 10 18/20 CA CA CA GA CA CA TA CA CA CA
226522 GT * 10 18/20 GT GT TT GT GT GC GT GT GT GT
234310 CA * 17 32/34 CA CA AA CA CA CA CA CA CA CA CA CA CA CA CA CA AA
238548 TG * 27 50/54 TG TG TG TG TC TG TA TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG AG TC TG
239300 TA * 13 24/26 TA TA TA TA CA TA TA TA CA TA TA TA TA
240163 AT * 10 18/20 AT AT AC AT AT AT AC AT AT AT
251469 TG * 10 18/20 TG TA TG TG TG TG TG TG TG TA
252650 AC * 10 18/20 AC AC AT AC AC AC AC AT AC AC
257089 GT * 10 18/20 GT GT CT GC GT GT GT GT GT GT
258400 GT * 11 20/22 GT GT GT GT GA GT GT GT GT GT GG
258820 TA * 12 22/24 TA TA TA TA TA TA CA TA TA TA TT TA
261130 TC * 13 24/26 TC TC TC TC AC TC TC TC TC TC TC TT TC
261327 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AC TA
262233 TC * 22 40/44 TC CC TC GC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TA TC TC AC
262894 CA * 11 20/22 CA AA CA CA CA CA CA CA CA CG CA
264145 AT * 12 22/24 AT AT AT AT GT AT AT GT AT AT AT AT
276913 CA * 11 20/22 CA CG CA CA CA CA CA CA CA CT CA
277624 GT * 10 18/20 GT GT AT TT GT GT GT GT GT GT
281658 CA * 11 20/22 CA CC CA CC CA CA CA CA CA CA CA
282580 AC * 22 40/44 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC TT AC AC AG TC AC AC
283524 AT * 14 26/28 AT AT AC AT AT AT GT AT AT AT AT AT AT AT
284609 TG * 12 22/24 TG TG TG CG TG TG CG TG TG TG TG TG
284857 TA * 10 18/20 TA TA TA TA TA TA CA TA TA TT
288104 TG * 10 18/20 TG TG CG GG TG TG TG TG TG TG
288125 GT * 21 38/42 GT GT GT GT GT GT GG GT GT GT GT GT GT GG GT GT GT GT GT GT CA
289238 GT * 13 24/26 GT GT GT GT GA GT GT GT GT GT GT GT GG
304401 TA * 11 20/22 TA TA TA TA TA TT TA TA TA TA TT
304503 TG * 10 18/20 TG CG TG CG TG TG TG TG TG TG
304537 AG * 12 22/24 AG TG AG AT AG AG AG AG AG AG AG AG
304697 TA * 16 29/32 TA TA TA TA AA TA TA TA TA TA TA TA TA TT TA TG
305348 TA * 11 20/22 TA TA TA CA GA TA TA TA TA TA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 307017
Total number of repeats detected.............. 72
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 9 9 4 2 2 11 11 11 1 3 0 0
15 to 19 0 3 0 0 0 1 0 0 0 0 0 0
20 to 24 0 1 0 0 1 0 0 1 1 0 0 0
25 to 29 0 0 0 0 0 0 1 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 9 13 4 2 3 12 12 12 2 3 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
9 AT + 13 TA = 22
4 AG + 2 GA + 3 CT + 2 TC = 11
12 GT + 12 TG + 12 CA + 3 AC = 39
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7290600|gb|AE003435.1|AE003435 Drosophila melanogaster genomic scaffold 142000013386054 section 19 of 35, complete sequence
Position Repeat Coverage Repeat
4448 AG * 11 21/22 AG AG AG AG AG AG AG AG AG AG AT
9542 CT * 12 22/24 CT CT CC CT CT CT CT CC CT CT CT CT
9568 CT * 11 20/22 CT CC CT CT CT CT CT CT CT AT CT
10611 TC * 11 20/22 TC GC TC GC TC TC TC TC TC TC TC
20917 CA * 10 18/20 CA CG CA CA CA CA CG CA CA CA
24503 AT * 14 26/28 AT AT AT AT GT AT AT AT AT AT AT AT AT TT
39173 GT * 10 18/20 GT GC CT GT GT GT GT GT GT GT
52338 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA CG CG
52494 AC * 12 22/24 AC AC AC AC AC AC AC AC AC GC AC GC
63430 AT * 16 30/32 AT AT AT AT AT AA AT AT AT AT AT AT AT AT AT AN
64187 TG * 12 22/24 TG TG CG TG AG TG TG TG TG TG TG TG
68800 TG * 12 22/24 TG TG TG TG AG TG TC TG TG TG TG TG
86338 TA * 10 19/20 TA TA TA TA TA TA TA TA TA TN
93550 TA * 10 18/20 TA TA TA TG TG TA TA TA TA TA
94013 TA * 13 24/26 TA TA TA AA TG TA TA TA TA TA TA TA TA
98136 AT * 11 21/22 AT AT AT AT GT AT AT AT AT AT AT
111976 TA * 10 18/20 TA TA TA CA TA TA TG TA TA TA
119720 AC * 10 18/20 AC AC AC AC GC AC AC AC AC AG
132937 TA * 12 22/24 TA TA CA TA TA CA TA TA TA TA TA TA
144654 GT * 10 18/20 GT GT GT GT GT GT GT TT GT TT
156484 CA * 17 31/34 CA CA CA CA CA CA CA CA CA CA CA CA CA CA GA CA TG
167858 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG TA TC
169152 CA * 18 33/36 CA AA CA CA CA CA CA CA CA CA CA CA CG CA CA CA CA CT
169639 GT * 16 30/32 GT GT TG GT GT GT GT GT GT GT GT GT GT GT GT GT
169790 GT * 10 18/20 GT GT GT GT GA GA GT GT GT GT
191813 CT * 12 22/24 CT CT CT CT CT CT CT CT TT CT CT CC
198970 CA * 11 20/22 CA CA CA CA CA CA CG CA CA CA TA
201332 CA * 13 24/26 CA CA GA CA CA CA CA CA CA CA CA CG CA
203357 TA * 13 24/26 TA CA TA TA TA TA TA TG TA TA TA TA TA
209139 TG * 13 24/26 TG CG TG TG TG TG TG TG TG TG TG TG CG
215402 CA * 17 31/34 CA CA CA CA CA CA CA CA CA TA CA CA CA CA CA CT TA
217840 TA * 16 29/32 TA TA TA TA CA CA TA TA TA TA TA TA TA TA GA TA
221150 AC * 17 31/34 AC AA CC AC AC AC AC AC AC AC AC AC AC AC AC AC AA
226077 TA * 11 20/22 TA TA TA TA TA TA TA TT TA TG TA
236245 TC * 12 22/24 TC TC TC TC TC TC TC TC TC TC TC CT
238453 AC * 10 18/20 AC AC CA AC AC AC AC AC AC AC
239244 GT * 12 23/24 GT GT GT GT GT GT GT GT GT GT GT GC
250401 TA * 10 18/20 TA TG TA TA TA TA TC TA TA TA
253350 AC * 11 20/22 AC AT AC AC AC AC AT AC AC AC AC
256326 TA * 10 18/20 TA CA TA CA TA TA TA TA TA TA
260148 CT * 15 27/30 CT CT CT CT CT CT CT CT CT CT CT CC CG CT CG
273089 AG * 10 18/20 AG AG AG AG AG AG AA AA AG AG
280998 AT * 10 18/20 AT AC AC AT AT AT AT AT AT AT
284279 AC * 16 29/32 AC AC AC AC AC AC AC AC AC AC AA AC AC AC CC AA
285545 CT * 11 20/22 CT CT CT CT CT CT CT CT CT CT TG
287953 TA * 10 18/20 TA TA TA TA TA TA TA TA TA GT
291945 AG * 11 21/22 AG AG AG CG AG AG AG AG AG AG AG
295849 TG * 10 19/20 TG TG TG TG TG TG TG TG TG AG
-----------------------------------------------------------------------------------------
Total sequence length......................... 300557
Total number of repeats detected.............. 48
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 10 3 0 4 4 5 4 2 4 0 0
15 to 19 1 1 0 0 2 3 0 1 0 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 11 3 0 6 7 5 5 2 5 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 11 TA = 15
3 AG + 0 GA + 5 CT + 2 TC = 10
5 GT + 5 TG + 7 CA + 6 AC = 23
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7290572|gb|AE003434.1|AE003434 Drosophila melanogaster genomic scaffold 142000013386054 section 18 of 35, complete sequence
Position Repeat Coverage Repeat
10721 TG * 12 22/24 TG AG TG TG TG TG TG TG TG TG TG TA
13749 GT * 12 22/24 GT GT GC GT GC GT GT GT GT GT GT GT
17146 CA * 10 18/20 CA CA CA CA CA CA CA TA CA CG
18474 AC * 10 19/20 AC AC AC AC AC AC AC GC AC AC
18741 AC * 11 20/22 AC AC AG GC AC AC AC AC AC AC AC
20316 AC * 10 18/20 AC AC AC AC AC AC AC AC AC TA
21323 TA * 15 28/30 TA TC TA TA TA TA TA TA TA TA TT TA TA TA TA
22570 GT * 13 24/26 GT TT GT GT GT GT GT GT GT GT GC GT GT
22659 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TC TA
25730 TG * 12 22/24 TG TG TG TG CG TG TG TG TG TG TG TC
27075 GT * 17 31/34 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GG TG
27109 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG TG GT
30839 AT * 13 24/26 AT AC AT AC AT AT AT AT AT AT AT AT AT
36063 CT * 10 18/20 CT CT CT TT CT CT CT CT CT CC
37434 TA * 10 18/20 TA TA TA TA TA TA TA TA TC TG
37809 TA * 12 22/24 TA TA TC TA TC TA TA TA TA TA TA TA
40152 CT * 13 24/26 CT CT CT CT CT CT CT CT TT CT CA CT CT
40952 AG * 11 20/22 AG AG AG AG AG AT AG AG AG AG AA
41013 GA * 16 29/32 GA GA GA AA GA GA GA GG GA GA GA GA GA GA GT GA
42481 AC * 12 22/24 AC TC AC AC AC AC AC AC AC TC AC AC
43828 AT * 10 19/20 AT AT AT AT AT GT AT AT AT AT
44483 GT * 11 20/22 GT GT AT GT GT GT GC GT GT GT GT
47007 GT * 20 36/40 GT GT GA GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT TC GG
48166 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CG CA GA
48399 TG * 15 27/30 TG CG TG TG TG TG TG TG TG TG TG TG TG TT AG
49608 TA * 10 18/20 TA TA CA CA TA TA TA TA TA TA
50797 CA * 10 19/20 CA CA CA CA CA CA CG CA CA CA
51798 CT * 10 18/20 CT TG CT CT CT CT CT CT CT CT
52083 AT * 13 24/26 AT AC AT AT GT AT AT AT AT AT AT AT AT
56605 TA * 17 31/34 TA TA TA TA TA TA TT TA TA TA TA TA TA TA TA AA GA
57410 AT * 16 29/32 AT AT AT AT AT AT AT AT AA AT AT AT TT AT AT AC
65359 AT * 10 18/20 AT CT AC AT AT AT AT AT AT AT
65777 AC * 14 26/28 AC AC AC AC AA AC AC AC AC AA AC AC AC AC
66539 GT * 11 20/22 GT GT GT GT GT GA GT GT GT GA GT
69294 TA * 10 18/20 TA TA TA TA TA TT TA AA TA TA
69337 TG * 11 20/22 TG TG CG TG TG TG TG TG TG TG TT
69451 AC * 10 18/20 AC AC AC AC AT AC AC AA AC AC
69637 TG * 10 18/20 TG TG TG CG TG TG TG TG TG AG
69742 TA * 10 18/20 TA TA TA CA TA TG TA TA TA TA
75221 CT * 18 33/36 CT CT CT CT CT CT CT CT CT CT GT CT GT CT CT GT CT CT
76964 AT * 10 18/20 AT AT AT GT AT AC AT AT AT AT
77871 TA * 11 20/22 TA TA TA TA CA TA CA TA TA TA TA
78318 TA * 11 21/22 TA TA TA TA TA TA TA TA CA TA TA
86059 AT * 10 18/20 AT AT AT AT GT AT AT AT TT AT
91020 TG * 18 33/36 TG CG TG TG TG TG TG TG TG TG TG TG TG TG TG TA TT TG
91948 CA * 11 20/22 CA CA CA CA CA CA CA CA CT CA CC
94356 GT * 12 22/24 GT GT GC GT GT GT GT GT GT GT GT TT
96557 TG * 12 22/24 TG TG GG TG TG TG TG TG TG TG AG TG
110124 GT * 10 18/20 GT GT GT GT GT GT GT GT GC GA
110849 AT * 10 18/20 AT AT AC AT AT GT AT AT AT AT
110935 TG * 15 27/30 TG TA TG TG TG TG TG TA TG TG TG TG TG TG TC
113217 CA * 20 36/40 CA CA CA CA CA CA CA CA CA CA CA CT CG CA CA CA CG CA CA CT
118481 TG * 13 24/26 TG CG TT TG TG TG TG TG TG TG TG TG TG
119335 TG * 13 24/26 TG TG TG TG TG TG GG TG TG TG GG TG TG
119481 CA * 11 20/22 CA CG CA CA CA CA CA CG CA CA CA
119640 AC * 11 20/22 AC AC AC AC AC AC AC GC AC AC CC
119999 GT * 18 33/36 GT GT GT GT GT GT GT GC GT GT GT GT GT GT GT GT AA GT
126185 AC * 13 24/26 AC AT AC AC AC AC CC AC AC AC AC AC AC
134871 GT * 13 24/26 GT GT GC GA GT GT GT GT GT GT GT GT GT
135457 TG * 12 23/24 TG TG TG TG TG TG TG TG TG TG TG CG
138592 TA * 19 35/38 TA TA TA TA TA TA TA TA CA TA TA AA TA TA TA GA TA TA TA
141587 AT * 11 20/22 AT AT AT AT TT AT AT AC AT AT AT
142708 TG * 27 49/54 TG AG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG CG AA AG
142990 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG TG GC
149474 TG * 12 23/24 TG TC TG TG TG TG TG TG TG TG TG TG
151946 AG * 11 20/22 AG AG AG AA AG AG AG AG AG AG GG
162958 CA * 16 29/32 CA CA CA CA CA CA CA CA CG CA CA CG CA CA CA TA
175238 TG * 15 27/30 TG TG TG TG TG TG TG TG TC TG TG TG TG GG GG
187947 GT * 12 22/24 GT GC GT GT GT GT GT GT GC GT GT GT
189711 TG * 13 25/26 TG TG TG TG TG TG TG TG TG TG TG TG CG
192381 AT * 10 18/20 AT AT TT AT GT AT AT AT AT AT
193742 CT * 25 45/50 CT CG CT CT CT GT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT TT CG CC
195203 AT * 10 18/20 AT AT AT AT GT AC AT AT AT AT
208099 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
216109 AT * 12 22/24 AT AT AT AT AT AT AC AT AC AT AT AT
220057 CA * 15 27/30 CA CA CA CA CA CA CA CA CA CA CA CA TG CA TA
220476 TG * 13 25/26 TG TG TC TG TG TG TG TG TG TG TG TG TG
220561 TG * 17 31/34 TG CT TG TG TG TG TG TG TG TG TG TG TG TG TG CG TG
221020 CA * 10 18/20 CA CA CA CG CA CA CA AA CA CA
224869 AC * 10 18/20 AC GC AC AC AC AC TC AC AC AC
224934 AC * 11 20/22 AC AT GC AC AC AC AC AC AC AC AC
225833 GT * 10 18/20 GT TT GT GT GC GT GT GT GT GT
229162 GA * 15 27/30 GA AA GA GA GA GA GA AA GA GA GA GA GA GA GG
229358 TG * 10 18/20 TG TG TG TG CG TG TG TG TG CG
229379 GT * 13 24/26 GT GT GT GC GT GT GT GT GC GT GT GT GT
232881 AC * 11 20/22 AC AC AC AC AC AC AC AC AT GC AC
235190 AC * 15 27/30 AC AC AC AC AC AA AC AC TC AC AC AC AC AC AT
235442 TG * 10 18/20 TG TG TG TG CG TG TG CG TG TG
238125 AT * 11 20/22 AT AT AT AT GT AT AT AC AT AT AT
238236 AG * 10 18/20 AG AG AG CG AG GG AG AG AG AG
238767 AT * 13 24/26 AT TC AT AT AT AT AT AT AT AT AT AT AT
242959 CA * 26 47/52 CA CA CA CC CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA TG CA TG CA
244161 CT * 17 31/34 CT CT CT CT CT CA CT CT CT CT CT CT CT CT TT CT CG
244456 CA * 15 27/30 CA CA CA CA CA CA CA CA CA CA CA GG CA CA CT
247893 AT * 10 18/20 AT AT AC AT AT AT AT AC AT AT
249870 GT * 11 21/22 GT GT GT GT GT GT GT GT GT GT AT
257934 TG * 13 24/26 TG TG CG TG AG TG TG TG TG TG TG TG TG
267673 AT * 17 32/34 AT AT AT GT AT AT AT AA AT AT AT AT AT AT AT AT AT
269581 AT * 11 20/22 AT AC AT AT AT AT AT AC AT AT AT
271915 TG * 21 38/42 TG TG TG TG TG TG TG TA TT TG TG TG TG TG TG AG TG TG TG TG TA
273156 GT * 11 20/22 GT GA GT GT GT GT GT GT GT GT GG
275970 AC * 18 33/36 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AT GC AC AT
276160 TG * 10 18/20 TG TG TG TG TG TG TG TG TT TT
277817 CA * 25 45/50 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CT GC TC
280297 AT * 11 20/22 AT AC AA AT AT AT AT AT AT AT AT
283635 TG * 12 22/24 TG TG TG TG TG TG TG TG TG GG AG TG
284087 TC * 12 22/24 TC TC TC TC TC TC AC TC AC TC TC TC
295166 AT * 10 18/20 AT TC AT AT AT AT AT AT AT AT
297943 AT * 14 26/28 AT AT AT AT AT CT GT AT AT AT AT AT AT AT
301826 TA * 20 36/40 TA TA TA TA TA TA TA TA TT TA TA TA TA TA TA TT TA TT TA TC
302273 TA * 16 29/32 TA TA TG TA TA TA TA TA TA TA TA TA AA TA AA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 302937
Total number of repeats detected.............. 111
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 18 8 3 0 11 6 19 12 1 3 0 0
15 to 19 2 4 0 2 2 3 5 2 0 2 0 0
20 to 24 0 1 0 0 0 1 1 1 0 0 0 0
25 to 29 0 0 0 0 0 2 1 0 0 1 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 20 13 3 2 13 12 26 15 1 6 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
20 AT + 13 TA = 33
3 AG + 2 GA + 6 CT + 1 TC = 12
15 GT + 26 TG + 12 CA + 13 AC = 66
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7290549|gb|AE003433.1|AE003433 Drosophila melanogaster genomic scaffold 142000013386054 section 17 of 35, complete sequence
Position Repeat Coverage Repeat
9825 TA * 10 18/20 TA TA TA TA TA TA TA TA TG TG
12141 CT * 10 18/20 CT CA CT CA CT CT CT CT CT CT
12451 GA * 12 22/24 GA GA GA GA GA GA GA GA GA GT GG GA
16107 AT * 14 26/28 AT AT AA AT AT AT AT AT AT AT AT AA AT AT
22264 AT * 11 20/22 AT AT AT AT AT AT AT AT AT GG AT
23472 TG * 10 18/20 TG TG TG TG TG TG TG TC GG TG
23651 AG * 10 18/20 AG AG AG AG AG AG AG AA TG AG
24376 AG * 10 18/20 AG AG AG AC AG AG AG AG AG CG
24561 TC * 10 18/20 TC GC TC TT TC TC TC TC TC TC
29438 GA * 13 25/26 GA AA GA GA GA GA GA GA GA GA GA GA GA
29719 TA * 15 27/30 TA TA AA TA TA TA TA TA TA TA TA CA TA TA TT
31920 TG * 11 20/22 TG TG TG TG TG TG TG TG TG CG TA
32310 CA * 15 28/30 CA CA CA CA CA AA CA CA CA CA CA CA CA CA AA
32535 CA * 10 18/20 CA CA CA CA CA CA CA CA CA AC
34369 AT * 15 27/30 AT AG AT AT AT AT AT AT AG AT AT AT AT AT GT
39970 AC * 16 30/32 AC AT AT AC AC AC AC AC AC AC AC AC AC AC AC AC
46961 CA * 14 26/28 CA CA CA AA AA CA CA CA CA CA CA CA CA CA
51228 TA * 16 29/32 TA TA TC TA TA TC TA TA TA TA TA TA TA TA TA TT
58226 AC * 13 25/26 AC AC AC AC AC AC GC AC AC AC AC AC AC
58533 CA * 11 20/22 CA CG CA CG CA CA CA CA CA CA CA
58734 CA * 11 20/22 CA CC CA CA CT CA CA CA CA CA CA
58830 CA * 10 18/20 CA CA CA CA CA CA CA TT CA CA
60912 CA * 10 18/20 CA CA CA CA CA CA CT CG CA CA
63011 AG * 13 24/26 AG AG AG AG AG AG AG CG AG AG CG AG AG
66085 TA * 13 25/26 TA TA TA AA TA TA TA TA TA TA TA TA TA
68430 AT * 10 18/20 AT AT AT AT AC AT AT AA AT AT
71705 GT * 10 18/20 GT GT GT GT GT GT GT GG GT GG
83442 AT * 11 20/22 AT AT AT AT GT AT AT GT AT AT AT
88321 GT * 10 18/20 GT GT GT GT GT AT GT GT GT GA
89495 GT * 10 18/20 GT GT GT GT GT GT GC GA GT GT
91164 GT * 15 27/30 GT GT CT GT GT GT GC GT GT GT GT GT GT GT GA
91357 GA * 17 31/34 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GG GG GG
96134 TA * 11 20/22 TA TC TA TA TA TA TA TA TA TA TT
98291 CA * 13 24/26 CA CA CA CA AA TA CA CA CA CA CA CA CA
100182 CA * 12 23/24 CA CA CA CA CA CA CA CA CA CA TA CA
100871 GT * 11 20/22 GT GT GT GT GT GT GT GT GC GA GT
104462 TG * 10 18/20 TG GG TG TG TG TG TC TG TG TG
107280 AT * 10 18/20 AT AT AT AT AT AT AT AT GT GT
111178 AC * 10 19/20 AC AC AC AC AC AC AC AC AC AT
114551 TG * 10 18/20 TG TG TG TG TG TG TG TG AG TT
114658 TG * 16 29/32 TG TA TG GG TG TG TG TG TG TG TG TG TG TG AG TG
115095 AC * 17 31/34 AC TC AC AC AC AC AC AC AC AC AC AC AC AC AC AC TA
117194 TG * 13 24/26 TG TG TG TG TG TG TG TT TG TG TG TG TA
117380 CA * 11 20/22 CA CA CA CC CA CA CA CA TA CA CA
119115 TA * 11 20/22 TA CC TA TA TA TA TA TA TA TA TA
119967 CA * 10 19/20 CA CA CA CA CA CA CA CG CA CA
120208 CA * 11 20/22 CA CA CA CC CA CA CA CT CA CA CA
121029 AT * 16 29/32 AT AT AT AA AT AC AT AT AT AT AT AT AT AT AT GT
122059 TG * 11 20/22 TG TG TG TG TG TG TC TG TG TG TA
122136 CT * 12 22/24 CT CT CT CT AT CT CT CT AT CT CT CT
122278 TG * 13 24/26 TG TT TG TC TG TG TG TG TG TG TG TG TG
123042 AT * 16 30/32 AT AT AT AT GT AT GT AT AT AT AT AT AT AT AT AT
123531 AG * 15 27/30 AG AG AG AG AG AG AG AG AG AG AG AG AT GG GG
124565 AT * 15 27/30 AT TT AT AT AT AT AT TT AT AT AT AT AT AT AC
126523 TG * 10 18/20 TG TG CA TG TG TG TG TG TG TG
126901 AC * 11 21/22 AC AT AC AC AC AC AC AC AC AC AC
127297 CT * 11 21/22 CT CT CA CT CT CT CT CT CT CT CT
127330 TG * 14 26/28 TG TG TG TA TG TG TG TG TG TG TG TG TG GG
128392 AT * 13 24/26 AT AT AT AT AT AT AT GT AT AT AT AT AA
131367 TG * 12 22/24 TG AG TG TG TG TG TG TG TG TG TG TT
131738 AT * 15 27/30 AT AC AT AT AT AC AT AT AT AT AT AT AT AT AC
132775 AT * 11 20/22 AT AT AT AT AT AT AT GA AT AT AT
136649 TC * 18 33/36 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC GC TC CG
136971 TA * 10 18/20 TA TA TA TA TA CA TA TA TA TT
137990 AG * 10 18/20 AG AG AG AG TG AG AC AG AG AG
138711 AT * 10 18/20 AT GT AT AT AG AT AT AT AT AT
140215 TA * 11 20/22 TA TA TA TA TA TA CA TA TA TA TT
140642 AC * 13 24/26 AC AT AC AC AA AC AC AC AC AC AC AC AC
141591 GT * 21 39/42 GT GT GT GT GT GT GT GT GT GC TT GT GT GT GT GT GT GT GA GT GT
142394 TG * 12 22/24 TG CT TG TG TG TG TG TG TG TG TG TG
142600 GT * 11 20/22 GT GT GT GT GT GT GT GT GT GT CA
144359 CA * 13 24/26 CA CA CA CA CA CA CA CA CA AC CA CA CA
145299 TC * 18 33/36 TC TC TC TC TC TC CC TC TA TC TC TC TC TC TC TC TC TT
148658 CT * 11 20/22 CT CT TT CT CT CT CA CT CT CT CT
151115 AT * 11 20/22 AT AT AT AT AT AC AT AG AT AT AT
153801 CT * 17 31/34 CT CT TT AT CT CT CT CT CT CT CT CT CT CT CA CT CT
155141 CA * 10 18/20 CA CA CA CA CA CG CA CA CA CG
155550 GT * 15 27/30 GT GG GT GC GT GT GT GT GT GT GT GT GT GT GA
156646 TG * 26 47/52 TG TG TG TG TC TG TG TG TG TG TG TG TG TG TG TG TG TG GG AG TG AG TG TG TG CG
160602 CA * 10 18/20 CA CA CA CA CT AA CA CA CA CA
162899 CT * 18 33/36 CT CT CT CT CT CT CT CT CT CT CT AT CT CT TT CC CT CT
166408 TC * 20 36/40 TC TC TC TC TC TC TC TC TC TC TC TT TC TC TC TC TA TC CC GC
168449 AG * 12 23/24 AG AG AG AG AG AG AG AG AG GG AG AG
169211 AG * 10 19/20 AG AG AG AG AG AG AG AG AG AA
170426 GT * 11 20/22 GT TC GT GT GT GT GT GT GT GT GT
171108 CT * 15 28/30 CT CT CT CT CT CT CT CT CT CT CT CT CT CT TC
171138 TC * 13 24/26 TC TC TC TC TC TC TC TC TC TC TC TT TT
174199 AC * 13 24/26 AC AC AC AC AC AA AC AC AC AG AC AC AC
178346 AT * 12 23/24 AT AT AG AT AT AT AT AT AT AT AT AT
180542 TG * 10 19/20 TG TG TG TG TG TG TG TG GG TG
180742 CA * 11 21/22 CA CA CA CA CA CA CA CA CA CA TA
190102 AG * 11 20/22 AG AG AG AG AG TG AG AG AG CG AG
193156 TG * 15 27/30 TG TG TA TG TG TG TG TG TG TG TG TG TG TG CC
193360 CA * 10 18/20 CA CA TA CA CA CG CA CA CA CA
193588 TG * 14 26/28 TG TG TC TG TG TG TG TG TG TG TG TG TG TA
194559 CA * 13 24/26 CA CA CT GA CA CA CA CA CA CA CA CA CA
194828 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG TG AA
195196 TG * 11 20/22 TG TG TG TG TG GG TG GG TG TG TG
195532 TA * 10 18/20 TA TA TA TG TA TG TA TA TA TA
197160 CA * 15 27/30 CA AA CA TA CA CA CA CA CA CA CA CA CA CA GA
199727 TA * 10 18/20 TA TA TA TG TA CA TA TA TA TA
200439 TG * 18 33/36 TG TT TG TG TG TG TG TG TG TG TG TG TG TG TG TG GT TG
201424 AT * 15 28/30 AT AT AT AT AT AT AT AT AA AT AT AT AT AC AT
201535 CA * 15 27/30 CA CA CA CC CA CA CA CA CA CA CA CA CA CA AC
202441 TA * 10 18/20 TA TA TA TA TA TA TA TA TT TT
203328 CA * 11 20/22 CA TA CA CA CA CA CA CA CG CA CA
203729 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC AC AC TG
205976 TA * 10 18/20 TA TA TA TA TA TA TA TG TA TG
206303 TC * 16 29/32 TC TC TG TC TC TA TC TC TC TC TC TC TC TC TT TC
206344 AT * 11 20/22 AT AA AT AT AT AT AT AT AT AT AC
207784 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG CT
207878 TA * 11 20/22 TA TG TA TT TA TA TA TA TA TA TA
209662 AC * 17 31/34 AC AC AC AT AC AC AT AC AC AC AC AC AC AC AC AC CC
215062 TA * 17 31/34 TA TA TA TA GA TA TA TA TT TA TA TA TA TA TA AA TA
215458 AT * 11 20/22 AT CT AA AT AT AT AT AT AT AT AT
217279 TG * 17 31/34 TG TG TG AT TG TG TG TG TG TG TG TG TG TG TG TG TT
218941 TG * 12 22/24 TG TC TG TG TG TG CG TG TG TG TG TG
221584 CA * 12 22/24 CA CT CA CA CA CA CA CA CA CA CG CA
221624 TG * 11 20/22 TG AG TG TG TG TG TG TG CG TG TG
227954 CA * 10 18/20 CA CA CA CA CA CA AA CA CA CT
227998 CA * 11 20/22 CA TA CA CA CA CA CA CA AA CA CA
228637 TA * 15 27/30 TA TA TA TA TA TA TA TA TG TA CA TA TA TA TC
228668 AT * 16 30/32 AT AT AT AT AT AT AT AT AC AT AT AT GT AT AT AT
230678 AT * 11 20/22 AT TT AT AT AT AT AG AT AT AT AT
232323 TG * 10 18/20 TG TG TG TG TG AG TG TG TG AG
232868 AC * 11 20/22 AC AC AC AC AC AC AC CC AC GC AC
233084 TA * 10 18/20 TA GA TA TA TA GA TA TA TA TA
234476 GT * 10 18/20 GT GT GT GT GT GT GT GT GG GA
234582 TC * 11 20/22 TC TC TC CC TC TC TC TC TC TC TT
234606 TC * 10 18/20 TC TC TC TC TC TC TC TC TA TG
235992 TC * 10 18/20 TC CC AC TC TC TC TC TC TC TC
245874 AT * 10 18/20 AT AT AT AT AT AT AT AT AT TA
251501 TA * 10 18/20 TA TA TA AA TA TA TG TA TA TA
252169 TA * 10 18/20 TA TA TA TA CA TA TA TG TA TA
254762 TC * 10 18/20 TC TC TC TC TC TC TC TT TC GC
255332 GT * 10 18/20 GT TG GT GT GT GT GT GT GT GT
258626 CA * 11 20/22 CA CA CA CA CC CA CG CA CA CA CA
261249 GT * 16 29/32 GT GT GT GT GT GT GT GT GT GT GT GA GA GT GT CT
264767 AC * 13 24/26 AC CC AC AC AC AC AC AC AC AC AT AC AC
264819 CA * 20 36/40 CA CA CA CA CA CA CA CA CA CA CA CA CG CA CA CG CA CA CA TG
267355 TC * 13 25/26 TC TC TC TC TC TC TC TC TC TC TC TC TT
271271 AT * 12 22/24 AT AT AT AT AT AT GT AT AT AT AT AA
273123 CA * 11 21/22 CA CA CA CA CA CA CA CG CA CA CA
276144 AC * 20 36/40 AC AC AC GC AC AC AC AC GC AC AC AC AC AC AC AC AC AC AC TT
277492 AT * 11 20/22 AT AT AT GT AT AT AT AT AA AT AT
277516 AT * 10 18/20 AT AT AT AT AT AT GT AC AT AT
279904 TA * 10 18/20 TA TA TG TA TA TA TA TA CA TA
280880 GT * 17 31/34 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GG GC AT
287795 GT * 25 45/50 GT GA GT GT GT GT GG GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GC TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 303258
Total number of repeats detected.............. 149
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 17 15 7 2 8 23 19 8 7 4 0 0
15 to 19 7 4 1 1 3 3 4 4 3 3 0 0
20 to 24 0 0 0 0 1 1 0 1 1 0 0 0
25 to 29 0 0 0 0 0 0 1 1 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 24 19 8 3 12 27 24 14 11 7 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
24 AT + 19 TA = 43
8 AG + 3 GA + 7 CT + 11 TC = 29
14 GT + 24 TG + 27 CA + 12 AC = 77
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7290523|gb|AE003432.1|AE003432 Drosophila melanogaster genomic scaffold 142000013386054 section 16 of 35, complete sequence
Position Repeat Coverage Repeat
806 CA * 10 18/20 CA CC CA CA CA CA CA CA CA CC
968 AT * 10 18/20 AT AC AA AT AT AT AT AT AT AT
2560 GT * 13 24/26 GT TT GC GT GT GT GT GT GT GT GT GT GT
8882 TG * 11 20/22 TG TA TG TA TG TG TG TG TG TG TG
12066 AT * 22 40/44 AT AT AT AT AT AT AT AC AT AT AT AT AT CT AT AT AT GT AT GT AT AT
15031 AT * 11 20/22 AT AT AT AT GT AT AT AT GT AT AT
15054 TA * 10 18/20 TA TA TA TA TG TA TA TA TA AA
17746 CA * 16 29/32 CA CA AA CA CA CA CA CA CA CA CA CA CA CA CA GC
17806 GT * 10 18/20 GT GT GA GT GT GT GT GT GT GA
20625 TG * 12 23/24 TG AG TG TG TG TG TG TG TG TG TG TG
22097 TG * 13 24/26 TG TG TG TG TG TG TG GT TG TG TG TG TG
22677 TG * 14 26/28 TG TA CG TG TG TG TG TG TG TG TG TG TG TG
23644 TG * 15 28/30 TG TG CG TG TG TG TG TG TG TC TG TG TG TG TG
25672 AT * 11 20/22 AT AA AT AT AT AT GT AT AT AT AT
36474 CA * 10 19/20 CA CA GA CA CA CA CA CA CA CA
36682 GT * 20 36/40 GT GT GT TT CT GT GT GT GT GT GT GT GT GT GT GT CT GT GT GC
37190 AC * 16 29/32 AC AC AC TC AC AC AC AC AC AC AC AC AC AC AC TG
39202 AT * 11 20/22 AT AT AG AA AT AT AT AT AT AT AT
39361 TG * 14 26/28 TG TG TG TG TG TG TG TG TG TA TG TG TG TA
39923 TG * 10 19/20 TG TG TG TG TG TG TG TG TG TA
40074 TA * 12 22/24 TA TA CA TA TA TA TA TA CA TA TA TA
40134 GT * 15 28/30 GT GT GT GT GG GT GT GT GT GT GT GT GT GT GC
41052 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TA TT
43414 GT * 10 18/20 GT CT GT GT GT GT GT GT GT GC
45155 TG * 10 18/20 TG TG CC TG TG TG TG TG TG TG
45383 AC * 10 18/20 AC AC AC AG AC AC AC AC GC AC
45510 TG * 19 35/38 TG TG TG TG TG TG TG TG TG TG TG TA AG TG TG CG TG TG TG
49732 TG * 11 20/22 TG TA TG TG TG TG TG TG TG TG TA
52635 TG * 10 18/20 TG TG TG TG TG CG TG TT TG TG
52989 GT * 13 24/26 GT CT GT GT GT GT GT GT GT GT GT GT AT
53066 CA * 10 18/20 CA CA CA CA CA CA CC CA CA CT
54220 AC * 22 40/44 AC AC GC AC AC AC AC AC AC AC AC AC AC AC AG AC AC AA AC GC AC AC
54399 AT * 12 22/24 AT AC AT AT AT TT AT AT AT AT AT AT
58955 CA * 20 36/40 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CG CA TA CA CA AC
64173 AG * 12 22/24 AG AG AG AG AG AG AG GG AG AG AG CG
64340 AC * 14 26/28 AC CC AC AC AC AC AC AC AC AC AT AC AC AC
72851 TG * 13 24/26 TG TG TG CG TG TG TG TC TG TG TG TG TG
78359 CT * 13 24/26 CT CT CT CT CT CT CT CT CT CT TT CG CT
78609 AG * 11 21/22 AG AA AG AG AG AG AG AG AG AG AG
92253 GT * 13 24/26 GT GA GT GT GT GA GT GT GT GT GT GT GT
95642 CA * 13 25/26 CA CA CA CA CA CA CA CA CA CA CA CG CA
95876 CA * 10 19/20 CA CA AA CA CA CA CA CA CA CA
106719 AC * 13 24/26 AC AC CC AC AC AC AC AC TC AC AC AC AC
106830 CA * 16 29/32 CA CA CA CA CG CA CA CA CA GA CA CA CA CA CA TA
114425 TG * 13 24/26 TG TG TG AG TG TG TG TG TG TG TA TG TG
120830 GT * 11 20/22 GT GT AA GT GT GT GT GT GT GT GT
120979 AC * 10 18/20 AC AC AC AC AC AC AC AC AC CG
121757 CA * 18 34/36 CA CA CA CA TA CA CA CA CA CA CA CA CA CA CA CA CA CG
135885 CA * 10 18/20 CA CA CA CA CA CA CA TG CA CA
148253 GT * 11 21/22 GT AT GT GT GT GT GT GT GT GT GT
148899 AC * 17 32/34 AC AC AC GC AC AC AT AC AC AC AC AC AC AC AC AC AC
148975 AC * 10 18/20 AC AC AC AC AC AC AC AC AA CC
149078 AC * 11 20/22 AC AC AC AC AG AC AC AC AG AC AC
149118 AC * 11 20/22 AC GC AC AC AC AC AC AC AC TC AC
152182 TC * 10 18/20 TC TC TC TC TC TC TC TC TC GG
154284 TG * 15 27/30 TG TG TG TC TG TG TG TG TG TG TG TG TG TT TC
159641 GT * 12 22/24 GT GT GT GT GC GC GT GT GT GT GT GT
161127 TG * 17 31/34 TG TG TG TG TG TG TG TG CG TG TG TG TG TG CC TG TG
164730 TG * 11 21/22 TG CG TG TG TG TG TG TG TG TG TG
165549 CA * 14 26/28 CA CA CA CA CA CA CA CA CA CA CA CA GG CA
166211 CA * 13 24/26 CA CA CA AA CA CA CA CA CA CA CA CA TA
166787 CA * 12 22/24 CA CA CA CA CA CA CA CA CA TG CA CA
168619 TA * 10 18/20 TA AA TA TA TA TA TA TA CA TA
172850 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CG CA TA
177449 AT * 13 24/26 AT AT AT GT AT AT AT AT AT AT TT AT AT
179766 AG * 11 20/22 AG GG AA AG AG AG AG AG AG AG AG
181523 TA * 10 18/20 TA TG TA TA TA CA TA TA TA TA
183778 TG * 10 18/20 TG TG TG CG TG TG TG TT TG TG
191532 GT * 11 20/22 GT GT GC GT GT GC GT GT GT GT GT
193451 TG * 14 26/28 TG TG TG TG TG TG TG TG TG TG TT TG TG TA
196148 TG * 13 24/26 TG TG TG TG TG TG CG TG TG TG TG CG TG
196300 AC * 10 18/20 AC AC AC AC GC AC AC AC AC AT
199945 AC * 10 18/20 AC AC AC AC AC AC AC AC TC GC
200148 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC AC CC GC
202439 TG * 13 24/26 TG TG TG TG TG TG TG CG TG TG CG TG TG
204580 GT * 10 18/20 GT GT GC GT GT GT GT GT AT GT
205368 TA * 11 20/22 TA TA TA TA TT TA AA TA TA TA TA
211260 TA * 17 31/34 TA TA TT TA TA TG TA TA TA TA TA TA TA TA TA TA GA
214392 AT * 10 18/20 AT AT AT AT AT AT AA AT AT TT
220929 TG * 12 22/24 TG TG TT TG TG TG TG TG TG TG GG TG
221212 TG * 12 22/24 TG TG TT TG TG TG TG TG TG TG GG TG
221495 TG * 12 22/24 TG TG TT TG TG TG TG TG TG TG GG TG
221778 TG * 10 18/20 TG TG TT TG TG TA TG TG TG TG
222061 TG * 11 20/22 TG TG TG TG TG TG GG TG TG TG TT
222332 TG * 11 20/22 TG TG TG TG TG TG GG TG TG TG TT
222602 TG * 12 22/24 TG TG TT TG TG TG TG TG TG TG GG TG
222885 TG * 12 22/24 TG TG TT TG TG TG TG TG TG TG GG TG
223168 TG * 12 22/24 TG TG TT TG TG TG TG TG TG TG GG TG
223451 TG * 10 18/20 TG TG TT TG TG TA TG TG TG TG
223734 TG * 11 20/22 TG TG TG TG TG TG GG TG TG TG TT
224004 GT * 12 22/24 GT CT GT GT GT GT GT GG GT GT GT GT
224277 TG * 12 22/24 TG TG TT TG TG TG TG TG TG TG GG TG
224561 TG * 12 22/24 TG TG TT TG TG TG TG TG TG TG GG TG
224844 TG * 12 22/24 TG TG TT TG TG TG TG TG TG TG GG TG
225127 TG * 10 18/20 TG TG TT TG TG TA TG TG TG TG
225695 TG * 11 20/22 TG TG TG TG TG TG GG TG TG TG TT
231650 TG * 10 18/20 TG CG TG TG TG TG TG TG TG TT
232272 TG * 10 18/20 TG CG TG TG TG TG TG TG TG TT
233862 CA * 13 24/26 CA TA CA CA TA CA CA CA CA CA CA CA CA
233971 AG * 12 22/24 AG AG CG AG AA AG AG AG AG AG AG AG
239756 TA * 12 22/24 TA TA TA TA TA TA TA TA TA TG CA TA
243046 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TT TT
243911 AT * 11 20/22 AT TA AT AT AT AT AT AT AT AT AT
255893 AC * 11 21/22 AC AC AC AC AC AC AC AC AC AC GC
262100 AC * 13 25/26 AC AC AC AC AC AC GC AC AC AC AC AC AC
280348 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AC AC
280958 AT * 10 18/20 AT AC AT AT AT AT AT AA AT AT
281149 AG * 11 20/22 AG CG AG AG AG AG AG AG AG AG AA
281668 TG * 10 18/20 TG AG TG TG TG TG TG TG TT TG
283113 TG * 12 23/24 TG AG TG TG TG TG TG TG TG TG TG TG
283517 AT * 12 22/24 AT AT AT AT GT AT AT AT AT AT AT CT
285148 TA * 14 26/28 TA TA TA TA CA TA TA TA TA TA TA TA TA CA
294533 AT * 10 18/20 AT AT AC AT AT AT AT AT AT AA
300292 AT * 12 22/24 AT AC AT AC AT AT AT AT AT AT AT AT
300803 TA * 11 20/22 TA TA CC TA TA TA TA TA TA TA TA
304680 CT * 17 31/34 CT CT AC CT CT CT CT CT CT CT CT CT CT CT CT CA CT
307197 TG * 15 27/30 TG TG TG TG TG TG AG TG TG CG TG TG TG TG TT
314721 TG * 11 21/22 TG CG TG TG TG TG TG TG TG TG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 319596
Total number of repeats detected.............. 118
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 13 8 5 0 12 11 39 11 1 1 0 0
15 to 19 0 1 0 0 2 3 5 1 0 1 0 0
20 to 24 1 0 0 0 1 1 0 1 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 14 9 5 0 15 15 44 13 1 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
14 AT + 9 TA = 23
5 AG + 0 GA + 2 CT + 1 TC = 8
13 GT + 44 TG + 15 CA + 15 AC = 87
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7290491|gb|AE003431.1|AE003431 Drosophila melanogaster genomic scaffold 142000013386054 section 15 of 35, complete sequence
Position Repeat Coverage Repeat
194 TC * 10 18/20 TC TC TG TC TC TC TC CC TC TC
19113 TG * 10 18/20 TG TG TG TG TG TG TG TG CG TT
22072 CA * 10 19/20 CA TA CA CA CA CA CA CA CA CA
23252 AC * 12 22/24 AC TC AC AC AC AC AC AC AC AC AC AT
30602 CA * 10 18/20 CA CA CA CA CA CC CA CC CA CA
32585 GA * 10 18/20 GA GA GA GG GA GA GA GA GG GA
32879 TG * 12 23/24 TG TG TG TG TG CG TG TG TG TG TG TG
32936 AC * 10 18/20 AC AC AC AC AC AC AC AG AG AC
32958 AC * 10 18/20 AC CG AC AC AC AC AC AC AC AC
33100 GT * 13 24/26 GT GT GG GT GT GT GT GT GT GT GT GT GC
37545 TC * 13 24/26 TC TC TC TC TC CC TC TC GC TC TC TC TC
37680 GA * 10 18/20 GA GA GA GC GA GA GA GC GA GA
54426 CT * 10 18/20 CT CT CT CT TT CT CT TT CT CT
55721 GT * 10 18/20 GT GT GT TT GT GT GT GT GC GT
59683 AC * 10 18/20 AC AC AC AC AC AC AC AC TC TC
59855 CA * 14 26/28 CA CA CA CA CA CA CA CA TA CA CA CA CA CC
64468 CA * 12 22/24 CA CA CA CA CA CA CA CT CA CA CA CT
64626 GT * 11 20/22 GT GT GT AT GT GT GT GT GT GT GC
66554 AT * 10 18/20 AT AC AT AT AT AT AT GT AT AT
73506 TC * 16 29/32 TC GC TC TC TC TC TC TC TC TC TC TC CC TC TC GC
77133 TG * 18 33/36 TG TA TG TA TG TG TG TG TG TG TG TG TG TG TG TG TA TG
86767 AC * 13 24/26 AC AC AC AC AC AC AC AC AT AC GC AC AC
91216 TA * 10 18/20 TA TA TA CA TA TA AA TA TA TA
91823 CA * 18 33/36 CA CA CA CA CA CA CA CA CA CA CA GA CA GA TA CA CA CA
94977 AT * 15 28/30 AT AT AT AT AT AT AT AA AT AT AT AT AT AT AG
95281 CA * 13 24/26 CA CA CA CA CA AC CA CA CA CA CA CA CA
96157 AT * 17 31/34 AT AT AT AT AT TT AA AT AT AT AT AT AT AT GT AT AT
97118 AT * 13 24/26 AT AT AT AT AT AC AT AT AT AT AT AT AC
101323 AC * 10 18/20 AC AC AC AC AC AC AC AC CC AT
110762 TA * 12 22/24 TA TA CA TA TA TA TA TA TA GA TA TA
115810 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CT CG CA
122323 TG * 18 33/36 TG TG TG TG TG TG TG GG TG TG TG GG TG TG TG GG TG TG
122884 AC * 11 20/22 AC AA AC GC AC AC AC AC AC AC AC
125359 TA * 11 20/22 TA TA TA TA TA TA TA TA TG TA TG
129682 CT * 18 33/36 CT CT CT CC CT CT CT CT CT CT CT CT CT CT AT CT GT CT
141296 CA * 14 26/28 CA CA AA CA CA CA CA CA CA CA CA CA CA AA
155695 CT * 15 27/30 CT CT CG CT CT TT CT CT CT CT CT CT CT CT AT
155740 AT * 12 22/24 AT AT AT AT TT AT AT AT AT AT AT AA
160797 AC * 13 24/26 AC AC AC AC AC AC AC AC AC TC GC AC AC
166147 TG * 16 29/32 TG CA TG TG TG TG TG TG TG TG TG TG TG TG TG TT
171531 AT * 13 24/26 AT AT CT AT AT AT GT AT AT AT AT AT AT
174227 AT * 12 22/24 AT AT AT AT CT AT AT AT AT AT AT TT
197268 AT * 12 22/24 AT AT TT AT AT AT AT AT AT AT AT AC
200475 AC * 12 22/24 AC AC AC AC AC AC AC AC TC AC AC AT
200581 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC AC TC GC
207201 AG * 13 24/26 AG AG AG AG AG AG AG AG AG AG CG AG AT
210784 TA * 11 20/22 TA TA TA TA TG TA TA TA TA AA TA
212288 TG * 12 22/24 TG TT TG TG TG TG TG TG TG TG TT TG
213025 AT * 11 20/22 AT AT GT AT AT AT AT AT AT AT TT
217875 TA * 17 31/34 TA TA TA TA TA TA CA TA TA TA TA TA TA TA TA AA GA
221708 CA * 10 18/20 CA TA CA CG CA CA CA CA CA CA
223404 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT AT AT
226730 GT * 13 24/26 GT GT GT GT GT AT GT GT GT GT GT GC GT
226764 GT * 10 18/20 GT GT TT GT GT CT GT GT GT GT
227970 CA * 11 20/22 CA CA CA CA CA CA CA CG CA CC CA
237459 AC * 11 21/22 AC AC AC AC AC AC AC AC AC AC AT
255460 AT * 14 26/28 AT AT AT AT AT AT GT AT AT AT AT AT AT AC
257494 GT * 10 18/20 GT GT CC GT GT GT GT GT GT GT
269169 AT * 10 18/20 AT AT AT AT GT GT AT AT AT AT
283397 AT * 10 18/20 AT AT AT AT AT AT AT AT AT CC
286415 AT * 13 24/26 AT AT AT AT AT AT AT AT AT AC AT AT AA
287446 AT * 10 18/20 AT AT AT AT AT AT AT AA AT GT
288368 AT * 10 19/20 AT AT AT AT AT AT AT AT AT GT
289231 CT * 12 22/24 CT CC CC CT CT CT CT CT CT CT CT CT
290086 CA * 10 19/20 CA CA CA CA CA CA CA CA CA CT
291218 AT * 11 21/22 AT AT AT AT AT CT AT AT AT AT AT
291324 TA * 10 18/20 TA TA TA TA TC AA TA TA TA TA
291395 TG * 11 21/22 TG TG TG TG TG TG TG TG TG TG TT
300148 TA * 10 18/20 TA TA TA TA TA TA TA TA TA AT
300295 AT * 13 24/26 AT AT AC AT AT TT AT AT AT AT AT AT AT
300326 AT * 12 22/24 AT AT AT AT AT AT AT TT AT AT AT TT
300421 AG * 13 24/26 AG AG AA AG AG AG AG AG AG AG AG AC AG
301888 GA * 20 36/40 GA GG GA GA GA CA GA GA GA GA GA GA GA GA GA GA GA GA GC GC
302400 GT * 11 20/22 GT GT GT GC GT GT GT GT GT GT CT
304064 CA * 11 20/22 CA CA CA TA CA CA CA CA CA CA CC
305180 CT * 16 29/32 CT CT CT CG CT CT CT CT CT CT CT CC CT CT CT CC
305906 TG * 10 18/20 TG GG TG TG TG TG TC TG TG TG
307091 GT * 15 27/30 GT GT GT GT GT GT GT GT GT GT TT GT GT GT CG
310447 CA * 38 70/76 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA AA CA CA CA CA CA CA CG GA CA CA TA GC
-----------------------------------------------------------------------------------------
Total sequence length......................... 311408
Total number of repeats detected.............. 79
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 16 6 2 2 11 11 5 8 2 2 0 0
15 to 19 2 1 0 0 0 1 3 1 1 3 0 0
20 to 24 0 0 0 1 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 1 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 18 7 2 3 11 13 8 9 3 5 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
18 AT + 7 TA = 25
2 AG + 3 GA + 5 CT + 3 TC = 13
9 GT + 8 TG + 13 CA + 11 AC = 41
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7290460|gb|AE003430.1|AE003430 Drosophila melanogaster genomic scaffold 142000013386054 section 14 of 35, complete sequence
Position Repeat Coverage Repeat
14633 TG * 12 22/24 TG TG TG TG TG TG AG TG TG TG CG TG
22847 TG * 10 18/20 TG TG TG CG TG TG TG TG GG TG
46600 AT * 17 31/34 AT AT AT AA AT AT AT AT AT AT AT AT AT AT AT AG AG
50538 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG CC
50680 AT * 10 19/20 AT AT AT AT AC AT AT AT AT AT
51082 CA * 10 18/20 CA CA CA CA CA CA CA CA TA TA
51102 TA * 17 32/34 TA TA TA TA TA TA TA TA TA TA TT TA TA TA TA TT TA
52551 AT * 11 20/22 AT AT AA AT AT AT AC AT AT AT AT
53896 GT * 11 21/22 GT GT GT GT GT GT GT GT GT GT GC
55730 TG * 11 20/22 TG TA AG TG TG TG TG TG TG TG TG
59150 GT * 11 20/22 GT GT GT GT AT GT GT GT GT GA GT
60593 GT * 11 20/22 GT GT GT GT GT GT GT GT GG GT TT
62262 AC * 11 20/22 AC AC AC AC AC AC GC AC AC AC AA
87675 AT * 11 21/22 AT AT AT AT AT TT AT AT AT AT AT
94017 AT * 11 20/22 AT AT AT AT CT AT AT AT AT AC AT
94928 CA * 16 30/32 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA TG
96512 CA * 17 31/34 CA CA CG CA CA CA CA CA CA CA CA CA CA CA GA CA TA
131189 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG TG CC
131490 TG * 13 25/26 TG TG TG TG TG TG TG TG TG TG TG TG TT
133966 AC * 10 19/20 AC AT AC AC AC AC AC AC AC AC
137224 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GT TT AT GT
144249 AT * 12 22/24 AT AT AT AT AT GT AT AT AT AT GT AT
165062 CA * 13 24/26 CA CA CA AC CA CA CA CA CA CA CA CA CA
167429 TG * 18 33/36 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TT GT
172682 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TG CA
201620 TA * 10 18/20 TA TA GA TA TA TA TA TA TA GA
201791 CA * 15 28/30 CA CA CA CA CA CA CA CA CA CA CA CA CA CC AA
201848 GT * 13 24/26 GT GC GT GT GT GT GT GT GT GT GT GT GC
203588 CA * 10 18/20 CA CA CA CA CA CA CA TA CG CA
203776 AC * 13 24/26 AC AC AC AC AC AC AC GC AC AC AC AC AG
207718 TG * 14 26/28 TG TG TG TG TG TG TG TG TG TG TG TG TG CT
210765 AG * 11 20/22 AG AG TG AG CG AG AG AG AG AG AG
211912 GT * 15 28/30 GT GT GT GT GT GC GT GT GT GT GT GT GT GT GC
234852 AC * 10 18/20 AC AC AG AC AC AC AC CC AC AC
236818 CA * 10 18/20 CA CA CA CA CA CC CA CA CG CA
238835 AC * 10 18/20 AC AC AC AC AC AT AT AC AC AC
245431 AT * 10 18/20 AT AT AT AT GT AT GT AT AT AT
250313 GT * 12 22/24 GT GT GT GT GT GT GT GT GT AT GT GC
254236 AG * 21 38/42 AG AG AG AG AG AG AG AG CG AG AG AG AG AG TG AG AG AG AG CA AG
255445 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG CG CG
257175 GT * 13 25/26 GT GT CT GT GT GT GT GT GT GT GT GT GT
257894 TG * 10 18/20 TG TG CC TG TG TG TG TG TG TG
259496 AT * 11 21/22 AT AC AT AT AT AT AT AT AT AT AT
260400 GT * 15 28/30 GT GT GT GT GT GT GT GT GT GT TT AT GT GT GT
264087 TA * 10 18/20 TA TA TA CA TA TA CA TA TA TA
266032 GA * 11 20/22 GA GA GA GT GT GA GA GA GA GA GA
266670 TC * 17 31/34 TC TC TC TC TC CC TC TC TC TT TC TC TC TC TC TG TC
266883 TC * 10 18/20 TC TC TC TC TC TT TC TG TC TC
-----------------------------------------------------------------------------------------
Total sequence length......................... 294292
Total number of repeats detected.............. 48
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 7 2 1 1 5 4 10 7 1 0 0 0
15 to 19 1 1 0 0 0 3 1 2 1 0 0 0
20 to 24 0 0 1 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 8 3 2 1 5 7 11 9 2 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
8 AT + 3 TA = 11
2 AG + 1 GA + 0 CT + 2 TC = 5
9 GT + 11 TG + 7 CA + 5 AC = 32
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7290438|gb|AE003429.1|AE003429 Drosophila melanogaster genomic scaffold 142000013386054 section 13 of 35, complete sequence
Position Repeat Coverage Repeat
9932 TA * 17 31/34 TA TA TA TA AA TA TA GA TA TA TA TA TA TA TA TT TA
17791 TG * 12 22/24 TG CG TG TG TG TG TG TG TG TG TG TA
20725 AT * 10 19/20 AT AT AT TT AT AT AT AT AT AT
26220 AT * 13 24/26 AT AT AT AT AC AT AT AT AT AT GT AT AT
31642 AT * 12 22/24 AT AT AT AT AC AG AT AT AT AT AT AT
38820 AG * 13 24/26 AG AG AG AG AG AG CG AG AG AG AG AG AA
44383 CA * 12 22/24 CA CA CA CA AA AA CA CA CA CA CA CA
48823 AG * 15 28/30 AG AA AG AG AG AG AG AG AG AG AG AG AG AG AC
49075 CT * 16 29/32 CT TT CT CT CT CT CT CT CT CT CC CT CT CT CT CA
77189 CA * 11 20/22 CA AA CA CA CA CA CA CA CA CA CC
81910 TA * 10 18/20 TA TA TA TA TA TA TA TT TG TA
84210 TG * 11 20/22 TG CG TG TG TG TG TG TG CG TG TG
102644 CA * 31 57/62 CA CA CA CA CA CA CA CA CG CA CA CA CA CT CG CA CA CA CA CA CA CA CA CA CA CT CG CA CA CA CA
106304 TA * 11 20/22 TA TA TA TA TA TG TA TA TA TA TG
124525 GT * 10 19/20 GT GT GT GT GT GT GT TT GT GT
158218 TA * 11 20/22 TA TA TA TA CA TA TT TA TA TA TA
159196 CA * 11 21/22 CA CA CA CA CA CA CA TA CA CA CA
171276 AT * 10 18/20 AT AT AT AT AT AT AT GT AT GT
185745 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TT GG
186301 TG * 13 24/26 TG TG TG TG TG TG TG TG TG GG TG TG TT
186832 CA * 10 18/20 CA CA TA CA CA CA GA CA CA CA
186999 GT * 10 19/20 GT GT GT GT GT GT GT GT GT GG
190554 GT * 14 26/28 GT GT GT GT GT GT GT GT GT GT GG GT GT TT
198962 CT * 13 24/26 CT CT CT CT CG CT CT CT CT CT CT TT CT
206671 GA * 10 18/20 GA GA GA AA GA GA AA GA GA GA
214594 GT * 20 36/40 GT GT GC AT GT GT GT GT GT GT GT GT GT GT GT GT GT GT AT TT
214744 GT * 12 23/24 GT GT GC GT GT GT GT GT GT GT GT GT
218765 TG * 10 19/20 TG TG TG TG TG TG TG TG TG TC
219834 GT * 17 31/34 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT AT AA
222399 TG * 21 38/42 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG AT GC
223769 GT * 11 20/22 GT GT GT GT GT GT GT GT GT GT TG
227556 TA * 11 20/22 TA TG TA CA TA TA TA TA TA TA TA
233420 TG * 10 19/20 TG TG TG TG CG TG TG TG TG TG
234183 GT * 17 31/34 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GG CA
235835 TG * 18 34/36 TG TG TA TG TG TG TG TA TG TG TG TG TG TG TG TG TG TG
236430 AC * 10 19/20 AC AC AC AC AC AC AC AC AC AT
242048 GT * 11 20/22 GT GC CT GT GT GT GT GT GT GT GT
245225 AC * 16 30/32 AC AC AC AC AC AC AC AC AC AC AC AC CC AC AC AT
247438 TA * 10 18/20 TA TA TA GA TA TG TA TA TA TA
247837 AC * 14 26/28 AC AC CC GC AC AC AC AC AC AC AC AC AC AC
250199 TA * 19 35/38 TA TA TA TA CA TA TA TA CA TA TA TA TA TA TA TG TA TA TA
252550 CA * 10 18/20 CA CT CA CA CA CA CA CA CA GA
252784 AC * 18 33/36 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AG AT AC AT
254758 GT * 11 20/22 GT GT GT GT GT GT CT GT GT GT GC
257283 GT * 11 20/22 GT AT AT GT GT GT GT GT GT GT GT
260783 CA * 10 18/20 CA CA CA CA CA CA CA CA GC CA
267649 TG * 10 18/20 TG GG TG TG TG TG TG TG GG TG
270542 AT * 11 20/22 AT AT AC CT AT AT AT AT AT AT AT
277476 TG * 10 18/20 TG TG TG TG TA AG TG TG TG TG
279817 AT * 13 24/26 AT AT AT AT AA AT AT AT AT AT AT AC AT
282582 GA * 23 42/46 GA CA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA TA GA GT GT
283735 CA * 12 23/24 CA CA CA CA CA CA CA CA CA CA CA CC
292712 AT * 11 20/22 AT AT AT AT AT AT AT GT AT AC AT
297139 CA * 12 22/24 CA CA CG CA TA CA CA CA CA CA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 297405
Total number of repeats detected.............. 54
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 7 5 1 1 2 8 8 8 0 1 0 0
15 to 19 0 2 1 0 2 0 1 2 0 1 0 0
20 to 24 0 0 0 1 0 0 1 1 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 1 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 7 7 2 2 4 9 10 11 0 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
7 AT + 7 TA = 14
2 AG + 2 GA + 2 CT + 0 TC = 6
11 GT + 10 TG + 9 CA + 4 AC = 34
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7290425|gb|AE003428.1|AE003428 Drosophila melanogaster genomic scaffold 142000013386054 section 12 of 35, complete sequence
Position Repeat Coverage Repeat
984 AC * 30 54/60 AC AC GC AC AC AC AC AC AC AC AC AC GC AC AC AC AC AC AC AC AC AT AC AC AC AC AC AG AG AG
2757 AG * 12 22/24 AG AA AG AG AG AG AG AG AG AG AG GG
3598 AG * 11 21/22 AG AC AG AG AG AG AG AG AG AG AG
5967 CA * 20 36/40 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CT TG CA AA
6087 CA * 13 24/26 CA CA CA AC CA CA CA CA CA CA CA CA CA
8656 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA AA AA
14878 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CC CT
14934 GT * 11 20/22 GT GT GT AT GT GT GT GT GT GT GC
16201 GT * 13 24/26 GT GC GT GT GT GT GT GT GT GT GT GT GC
24914 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CG GA
27819 TG * 10 18/20 TG TG TG TG GG TG TG TG CG TG
33818 GT * 10 18/20 GT CC GT GT GT GT GT GT GT GT
34019 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG CG TC TG
37550 CA * 16 30/32 CA CG CA CA CA CA CA CA CA CA CA CA CA CA CA CC
39026 TG * 12 22/24 TG TG TG TG TG TG TG TG TG CG TG AG
39847 GT * 12 22/24 GT GG GT GT GT GT GT GT GT GT GT TT
46261 AT * 10 18/20 AT AT AT AT AT AA AT AC AT AT
134060 CA * 19 35/38 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA TG CA CG CA
135740 GT * 13 24/26 GT AT GT GG GT GT GT GT GT GT GT GT GT
143068 AT * 11 20/22 AT AT AT GT AT AT AT GT AT AT AT
143540 AT * 12 22/24 AT AT AC GT AT AT AT AT AT AT AT AT
150272 AT * 12 22/24 AT AT AT AT AT AT CT AT AT GT AT AT
153297 AT * 10 18/20 AT AT AT AT AT AT AT TT AT AA
154403 AT * 10 18/20 AT AT AT AC CT AT AT AT AT AT
154986 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AC CA
160713 GT * 16 29/32 GT GT GT GT GT GT GT GT GT GT GT GC GT GT AT GA
163818 GT * 17 31/34 GT GT GT GG GT GC GT GT GT GT GT GT GT GT GT GT GC
164007 CA * 20 36/40 CA CA CA CA AA CA TA CA CA CA CA CA CA CA CA CA CA CA GA GA
164203 CA * 17 31/34 CA CA CA CA CA CA CA CA CA CA CA CA CA CT AA CT CA
169042 AC * 12 22/24 AC AC AA AC AC AC AC AA AC AC AC AC
169796 TA * 17 31/34 TA TA TA TA AA TA TA TA TA TA TA TA TA TA TA TG TT
171200 TA * 18 33/36 TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA TA TA GT
174411 AT * 12 23/24 AT AT AT AT GT AT AT AT AT AT AT AT
182756 TA * 10 19/20 TA GA TA TA TA TA TA TA TA TA
186309 AG * 15 27/30 AG AG AG CG AG AG AG GG AG AG AG AG AG AG CG
186779 AG * 10 18/20 AG AG AT AG AG AG AG AA AG AG
190829 TG * 10 18/20 TG TG TG GG TG AG TG TG TG TG
192367 AG * 14 26/28 AG AG AG AG AG AG AG TG AG AG AG GG AG AG
194205 TC * 11 20/22 TC TC TC TT TC TC TC TC GC TC TC
196697 AG * 13 24/26 AG AA AG AG AG AG AG AG AG AG CG AG AG
204319 TA * 10 18/20 TA TA TA TT CA TA TA TA TA TA
206048 CA * 14 26/28 CA CA CA CA CA CA CA CA CG CA CA CA CA TA
206516 TC * 11 20/22 TC TC TT TC TC TC TC TC GC TC TC
211063 AG * 18 33/36 AG AG AG AG AG AG AG AG AG AG AG AG AG AG TG AG CG AA
215520 TA * 13 24/26 TA AA TA TA TA TA TA TA TA TA TA CA TA
217630 AT * 17 32/34 AT AT AT AT AT AT AT AT AT GT AT AT AT AT AT AT AA
219461 TA * 10 18/20 TA TA TA TA TT TA AA TA TA TA
219874 AT * 21 38/42 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT GT AT AT TA
223175 AT * 10 18/20 AT AT AT AG AT AT AT AT TT AT
224430 AT * 11 20/22 AT AT AT AT AT AT AT AT GT AT AC
224727 AT * 10 18/20 AT AT AT GT AT GT AT AT AT AT
227872 TA * 12 22/24 TA TG TA TA TA TA TA GA TA TA TA TA
228397 TG * 12 23/24 TG TG TG TG TG TG TG TG TC TG TG TG
232721 TG * 12 22/24 TG TG TG TG TG TG TT TG TG TG TA TG
232921 TC * 13 24/26 TC TT TC TC TC TC TC TC TC TA TC TC TC
233119 CA * 15 28/30 CA CA CA CA TA TA CA CA CA CA CA CA CA CA CA
234720 TG * 17 31/34 TG TG TG TA TG TG TG TG TG TG TG TG TG TG TG TG CA
236193 TG * 10 18/20 TG TG GT TG TG TG TG TG TG TG
236619 CA * 12 22/24 CA CA CA CA CA CA CA CA CA AG CA CA
239019 TA * 11 20/22 TA TA TA TA TA TA TA TC TG TA TA
244299 AC * 20 36/40 AC GC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC TT GC
245247 TG * 16 29/32 TG TG TG TG TG TG TG TG TG TG TG TG TG GG TG GC
246757 TA * 11 20/22 TA TA TA TA TA TA TA TA TG TA TG
248496 AG * 10 18/20 AG AG AG AG AG AG AG AG AT GG
249987 GT * 18 33/36 GT GT TT GT GT GT GT GT GT GT GT GT GT GT GA GT GT GC
251676 CA * 20 37/40 CA AA GA CA CA CA CA CA CA CA CA CA CA CA CA CA CA GA CA CA
253281 CA * 10 19/20 CA CA CA CA CA CA CA CA GA CA
254428 AG * 12 22/24 AG AG AG AT AG TG AG AG AG AG AG AG
261668 GT * 16 30/32 GT GT GT GT GT TT GT GT GT GT GT GT GT GT GT GG
262510 GA * 10 18/20 GA GA GA GG GA GG GA GA GA GA
262532 GA * 10 18/20 GA GA GA GA GA GA GA GC GA CA
263917 AC * 15 28/30 AC AC AC AC AC AC AC AC AC AC AC AC AC AC TA
265724 TA * 12 22/24 TA TA TA TA TA TA TT CA TA TA TA TA
269057 AT * 11 20/22 AT AT AA AT AT AT AA AT AT AT AT
274708 GT * 12 22/24 GT GC GT GT GT GT GT GT GT GT GT GA
274826 GT * 13 24/26 GT AT GT GT GT GT GT GT GT GT GT GT CT
278824 GT * 11 21/22 GT GT GT GT AT GT GT GT GT GT GT
281888 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA TA GA
281928 AC * 12 22/24 AC AC AC AC AC CC AC AC AT AC AC AC
290684 TC * 10 18/20 TC TC TC TC TT TC CC TC TC TC
292056 TC * 11 20/22 TC TC TC TC TC TC TC TC TC CG TC
293126 TC * 20 37/40 TC TC TC TG TC AC TC TC TC TC TC TC TC TC TC TC TC TC TC TT
-----------------------------------------------------------------------------------------
Total sequence length......................... 301465
Total number of repeats detected.............. 82
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 11 8 7 2 3 8 7 8 5 0 0 0
15 to 19 1 2 2 0 1 4 2 4 0 0 0 0
20 to 24 1 0 0 0 1 3 0 0 1 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 1 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 13 10 9 2 6 15 9 12 6 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
13 AT + 10 TA = 23
9 AG + 2 GA + 0 CT + 6 TC = 17
12 GT + 9 TG + 15 CA + 6 AC = 42
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7290398|gb|AE003427.1|AE003427 Drosophila melanogaster genomic scaffold 142000013386054 section 11 of 35, complete sequence
Position Repeat Coverage Repeat
5744 GT * 10 18/20 GT GC GT GC GT GT GT GT GT GT
5767 TG * 17 31/34 TG TG TC TG TG TG TG TG TG TG TG TG TG TG TG TC AG
20351 GT * 13 25/26 GT GT GT GT GT GT GT GT GT GT GT GT GC
23020 AT * 13 24/26 AT AT AA AT AC AT AT AT AT AT AT AT AT
23629 AT * 10 18/20 AT AT AT AT AT AT AT AT TT TT
27375 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG CT
31803 GT * 18 34/36 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT CA
35224 CA * 10 18/20 CA CA CA CA CA CA CT CA AA CA
35960 TG * 11 20/22 TG CG TG TG TG TG TG TG TG TG CG
35986 TG * 10 19/20 TG TG TG TG TG TG TG TG TG TT
44838 TA * 10 18/20 TA TA TT TA TA TA TT TA TA TA
47103 GT * 12 22/24 GT GT GT GT GT GT GT GC GT GT GG GT
50560 AG * 10 18/20 AG CG CG AG AG AG AG AG AG AG
50581 GA * 13 24/26 GA GC GA GA GA GT GA GA GA GA GA GA GA
53291 AG * 11 20/22 AG AG TG AG AG GG AG AG AG AG AG
55840 AG * 17 31/34 AG AG AG CG AG AG AG AG AG AG AG AA AG AG AG AG GG
56771 CT * 11 20/22 CT CT CT CT CT AT CT CT CT CT TT
57432 TG * 10 19/20 TG TG TG TG TG TG TG TG CG TG
57747 TG * 15 27/30 TG CG TG TG TG TG TG TG TG TG TG TG TG TG CT
64346 CA * 12 22/24 CA AA CA CA CA CA CA CA CA CA CA AA
65941 AC * 10 19/20 AC GC AC AC AC AC AC AC AC AC
66209 AG * 12 22/24 AG AG AG AA AG AG AG AG AG AG AG AA
66533 TG * 19 35/38 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TA TG CA
68576 CA * 13 25/26 CA CA CA CA CA CA CA CA CA CA CA CA AA
68932 GT * 11 20/22 GT GT AT GT GT GT GT GT GT GT GG
70748 AT * 11 20/22 AT AT AT TT AT GT AT AT AT AT AT
74741 AC * 10 18/20 AC AC GC AC AC AT AC AC AC AC
75313 TC * 17 32/34 TC TT TC TC TC TC TC TC TC TC TC TC TC TC TC TC TG
75766 TG * 14 26/28 TG CG TG TG TG TG TG TG TG TG TG TG TG AG
75896 AC * 16 29/32 AC AC AC AC AC AC AT AC AC AC AC AC AC AC AA GC
80297 CA * 13 24/26 CA CA CA CA CA CA CT CA CT CA CA CA CA
81313 AC * 17 31/34 AC AC AC AC AC AC AC AC AC AC AC AC AC AC TT AC AT
83613 TC * 12 22/24 TC GC TC TC TC TC TC TC TC TC TA TC
84486 CT * 27 50/54 CT CT CT CT CT CT CT CT CT CT CT CT CT CT AT CT CT CT TT CT CT TT CT CT CT CT CG
85067 TG * 14 26/28 TG TG TG TG TG TG TG TG TG TG TG TG TG GC
90358 CT * 15 28/30 CT CT CG CT CT CT CC CT CT CT CT CT CT CT CT
90392 CT * 10 18/20 CT CT GT CT CT CT CT CT CG CT
91249 CT * 17 31/34 CT CT CT CT CG CT CT CT CT CT CT CT CT CT AA CT CT
91684 TG * 16 29/32 TG TG TG TG TG TG TG TG TG TG TG CG TG TG TG GA
93694 CA * 17 31/34 CA AC CA CA CA CA CA CA CA CA CA CA CA CA CA CA CG
98203 TA * 10 19/20 TA TA TA TA TA TA TA TA TA TT
98546 AT * 11 20/22 AT AT AT AG AT AT AT AG AT AT AT
98806 AT * 11 21/22 AT AT AT AT AT AT AT AT AT AT AA
103041 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TT TC
108581 TA * 12 22/24 TA TA TA TA CA TA TA TA TA TT TA TA
116403 GT * 13 25/26 GT GT GT GT GT GT GT GT GT GT GT GT GC
123098 GT * 10 18/20 GT GT GT GT GT GT GT GT TT TT
127573 TG * 15 27/30 TG TG AG TG TG TG TG TG TG TG TG TG TG AG CG
134910 AT * 12 22/24 AT AT AT AT AT TT AC AT AT AT AT AT
136642 AC * 11 20/22 AC AC AC AC AC AC AC AC AT AC AT
136745 TG * 12 22/24 TG TG TG TG TG TG TG TG CG TT TG TG
140094 GA * 15 27/30 GA GA GA GA GA GA GA GA GA TA GG GA GA GA GG
143993 TA * 16 29/32 TA TA TA TC TA TA TA TC TA TA TA TA TA TA TA GA
145841 TA * 20 36/40 TA TA TA TA TA TA CA TA TA TA TA TG TA TA TA TA CA TA TA CA
146847 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AC AC TA
155529 AT * 16 29/32 AT AT AC AT AT AT AT AT AT AT AC AT AT AT AT AA
155705 TG * 23 42/46 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TA GA TA
157877 AT * 10 18/20 AT AT GT AT AT AT AT GT AT AT
172143 AT * 15 27/30 AT AT AT GT AT CT AT AT AT AT AT AT AT AT TT
172504 AT * 10 18/20 AT AT AT AT AT AT AT AT TT TT
182493 TA * 10 18/20 TA TA TC TA TA TA TC TA TA TA
186176 AT * 10 18/20 AT AT AT GT AT AT AT AT AT AG
188734 AT * 10 18/20 AT AT AT AT AT AT AT AA AT AC
195367 AT * 15 28/30 AT AT AT AC AT AT AT AT AT AT AT AT AC AT AT
198606 AT * 11 20/22 AT AT AT AT AT AT GT AT AT AA AT
200851 TA * 10 18/20 TA TA TA TA CA TA TA TA TA AA
207769 TG * 16 30/32 TG TG TG TG TG TG CG TG TG TG TG TG TG TG TG TA
210999 TC * 13 24/26 TC TG TC TC TC TC TC TC TC TC TC TC TG
211027 TC * 16 29/32 TC TC TC TC TC TC TC TC TC TC TC TC TG TT TC TG
224503 TG * 21 38/42 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TC GT TT
227424 AT * 13 24/26 AT AT AT AT GT AC AT AT AT AT AT AT AT
234161 AT * 13 24/26 AT AT AT AT AT GT AT AT AT AT AT AT AA
236001 TA * 12 22/24 TA TA TG TA TA TG TA TA TA TA TA TA
238052 TA * 10 18/20 TA AA TA TA TA TA TG TA TA TA
240143 AT * 10 19/20 AT AT AT AT AT AT AT AT AT TT
262238 AT * 17 31/34 AT GT AT AT AT TT AT AT AT AT AT AT AT AT AA AT AT
263004 GT * 11 21/22 GT GT GT GT GT GT GT GT GT GT CT
266408 AT * 11 20/22 AT TT CT AT AT AT AT AT AT AT AT
268147 AC * 10 18/20 AC TC AC AC GC AC AC AC AC AC
269894 AC * 11 20/22 AC AC AC AC AC AC AC AC AT AC AT
273071 AT * 10 18/20 AT AT AT AT AC AT AT AT AA AT
273096 TA * 13 24/26 TA CA TA TA TA TA TG TA TA TA TA TA TA
278950 CT * 10 19/20 CT CT CT CT CT CT CT CT CT AT
282392 TG * 11 20/22 TG TG TG TG TG TG TG TG TG CA TG
283400 TA * 11 20/22 TA GA AA TA TA TA TA TA TA TA TA
295929 CA * 13 24/26 CA CC CA CA CA CA CA CA CA CA CG CA CA
305325 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA CG GA
305955 AT * 10 18/20 AT AT AT AA AT TT AT AT AT AT
306721 CA * 15 27/30 CA CA CA CA CA CA CA CA CA CA CA CA CA TT GA
307502 CA * 10 18/20 CA CG CA CA CA CA CA CA CA CC
308053 TG * 10 18/20 TG CG GG TG TG TG TG TG TG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 310909
Total number of repeats detected.............. 91
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 17 9 3 1 6 7 10 7 2 3 0 0
15 to 19 4 1 1 1 2 2 6 1 2 2 0 0
20 to 24 0 1 0 0 0 0 2 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 1 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 21 11 4 2 8 9 18 8 4 6 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
21 AT + 11 TA = 32
4 AG + 2 GA + 6 CT + 4 TC = 16
8 GT + 18 TG + 9 CA + 8 AC = 43
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7290382|gb|AE003426.1|AE003426 Drosophila melanogaster genomic scaffold 142000013386054 section 10 of 35, complete sequence
Position Repeat Coverage Repeat
7065 CA * 18 34/36 CA GT CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
12430 AT * 13 24/26 AT GC AT AT AT AT AT AT AT AT AT AT AT
20856 TG * 10 18/20 TG TG TG TG TG TG TG TG TG GT
22519 TA * 10 18/20 TA TA TA TA TA TA TA TA TG AA
39814 GT * 12 22/24 GT GT GT GT GT GT GT GT GT AT CT GT
46772 AC * 14 26/28 AC AC AG AT AC AC AC AC AC AC AC AC AC AC
60906 AT * 10 18/20 AT AT AT AT AT AT AT AT GC AT
67322 AG * 15 27/30 AG AG AG AG AG AG AG AG AG AG AG AG AG TA TG
83901 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG CG CG
83939 TG * 10 18/20 TG TG TG TG TG TG TG TG TG CT
86738 TA * 10 18/20 TA AA TA TA TA TA TA AA TA TA
89487 AT * 11 20/22 AT AT AT CC AT AT AT AT AT AT AT
94197 CT * 12 22/24 CT CA CT CT CT CT CT AT CT CT CT CT
110955 CT * 15 27/30 CT AT CT CT CT CT CC CT CT CT CT CT CT CT TT
121886 CA * 16 29/32 CA TA CA CA CA CA CA CA AA CA CA CA CA CA CA CG
143148 TA * 11 20/22 TA TA TA TA TA CA TA TA CA TA TA
145811 AC * 16 29/32 AC AC AC AC AC AC AC AC AA AA AC AC AC AC AC TC
149313 AC * 20 37/40 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AG GA AC
154887 CT * 15 27/30 CT CT CT CA CT CT CT CT CT CT GT CT CT CT CA
155272 CT * 10 18/20 CT CT CT CT CT AT CT CA CT CT
156434 GT * 11 20/22 GT GT GT GT GT GT GT GG AT GT GT
157839 AG * 13 24/26 AG AG AG AG AG AG AG AG AG AG AG GG AC
159835 TC * 10 18/20 TC TC TC TC TC TC TT TC TC TT
162761 TA * 12 22/24 TA TG TA TA TA TA TA TA TG TA TA TA
164362 AC * 20 36/40 AC AC AC CG AC AC AC AC AC AC AC AC AC AC AC AC AA AC AC CC
165572 CA * 17 31/34 CA CA CA CA CA CA CA CA CA CA CA CA CA CA TG CA TA
170594 GT * 16 29/32 GT GT GT GT GT GT GT GT GT GT GT GT GC GT CG GT
178351 CA * 12 22/24 CA CC TA CA CA CA CA CA CA CA CA CA
181359 AT * 10 18/20 AT AT AC AT AT AT AT GT AT AT
184457 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GT GT GT TA
185249 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GT GT GA GA
190878 TA * 10 18/20 TA CA AA TA TA TA TA TA TA TA
192553 AT * 15 28/30 AT AT AT AT AT AT AT AT AT AT AT AT AT AG TT
192736 TA * 15 27/30 TA TA TA TA TA TA TA TA TA TA TA TA TA GA GC
194171 AG * 13 24/26 AG AG AG CG AG AG AG AG AG AG GG AG AG
195584 CT * 13 24/26 CT CT CT CT TT CT CT CT CT CT CT CT CC
198577 TC * 15 28/30 TC TC TC TC TC TC TC TC TC TC TT TC TC TC TA
201318 CT * 10 18/20 CT CT CT CA CT CT CT CC CT CT
202420 GA * 10 18/20 GA AA GA GA GA GA GT GA GA GA
205851 TG * 11 20/22 TG TA TG TG TG TG TG TG TG TG TA
206479 TG * 22 40/44 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG CG AG TG TG TA TG TA
209129 TA * 12 22/24 TA TA TA TA TA TA TA TA TA TA TA AG
209688 TG * 11 20/22 TG TG TG TG TG TG TG TG CG TG TT
209720 CA * 12 22/24 CA CA CA CA AA CA CA CA CA CA CA CC
212023 AT * 11 20/22 AT AT AT AT AT AT AT AT AG AT TT
213247 CA * 18 33/36 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA AC AA CA
217921 AC * 15 27/30 AC AA GC AC AC AC AC AC AC AC AC AC AC AC CC
230321 AT * 12 23/24 AT AT AT AT AT AT AT AT AT AG AT AT
231445 AC * 10 18/20 AC AC AC AC AC AC AC AA AC CC
235270 TC * 18 33/36 TC TC TC TC TC TA TC AC TC TC TC TC TC TC TC TC TC GC
249857 AG * 16 30/32 AG AG AG AG AG AG AG AG AG AA AG AG AG AG AG AT
252972 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TG AA
259852 AT * 17 31/34 AT AT GT AT TT AT AT AT AT AT AT AT AT AT AT AT GT
264181 TA * 12 22/24 TA TA TA TA TA TA AA TA CA TA TA TA
273954 AT * 19 35/38 AT AT AT AT AT AT AT AT AT AT AC AT AT GT AT AT AT AT AC
291815 AT * 17 31/34 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA GT GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 300193
Total number of repeats detected.............. 56
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 6 7 2 1 2 2 6 4 1 4 0 0
15 to 19 4 1 2 0 2 4 0 1 2 2 0 0
20 to 24 0 0 0 0 2 0 1 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 10 8 4 1 6 6 7 5 3 6 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
10 AT + 8 TA = 18
4 AG + 1 GA + 6 CT + 3 TC = 14
5 GT + 7 TG + 6 CA + 6 AC = 24
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7290341|gb|AE003425.1|AE003425 Drosophila melanogaster genomic scaffold 142000013386054 section 9 of 35, complete sequence
Position Repeat Coverage Repeat
15900 AC * 10 18/20 AC AC AC AC AC AC AC AC AT AT
15920 AT * 15 28/30 AT AT AT AT AT AT AT AT AT AT AT AT AT AT NN
17226 TA * 10 18/20 TA TA TA TA TA TA TA TA TG TT
17426 AT * 10 18/20 AT AG GT AT AT AT AT AT AT AT
29788 AT * 16 30/32 AT AT AT AT AT AT AT AT AT AT AT AT AT AT CT TT
30122 AC * 12 23/24 AC AC AC TC AC AC AC AC AC AC AC AC
32132 CA * 12 22/24 CA CA CA CA CA CA TA CA CA CA CG CA
32281 CA * 11 20/22 CA TC CA CA CA CA CA CA CA CA CA
32306 AC * 12 22/24 AC AC AA AC AC AC AC AC AC AC AC AT
32834 AT * 29 53/58 AT AG AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT AT AT AT AT AT AC GA
33951 AC * 12 23/24 AC AC AC CC AC AC AC AC AC AC AC AC
56034 TA * 10 18/20 TA AA TA TA TA TA CA TA TA TA
94794 TA * 10 18/20 TA TA TA TA TA AA TA TG TA TA
98530 GA * 15 27/30 GA GA GA GA GA GA GA GA GA GA GA GG GA CA GT
98645 CA * 10 18/20 CA CA CA CA CA CA AA CA CA AA
102120 CA * 10 19/20 CA CA CA CA CA CA CG CA CA CA
102165 AC * 11 20/22 AC AC AG AT AC AC AC AC AC AC AC
110221 AT * 10 18/20 AT AT AT AT AT AT AT AT AT GG
112648 CA * 10 18/20 CA CA CA CA CA CA CA CA GC CA
119002 GT * 10 18/20 GT GT GT GT GT GG GT GT GT TT
120406 GA * 13 24/26 GA GT GG GA GA GA GA GA GA GA GA GA GA
125989 TA * 15 27/30 TA TG TA TA TA TA TA TA TA TA GA TA TA TA GA
129840 CA * 15 28/30 CA CA CA CA GA CA TA CA CA CA CA CA CA CA CA
131044 GT * 11 20/22 GT GT GT GT GT GT GT GT GT GA GA
131723 TA * 17 31/34 TA TA TA TA TA CA TA TA CA TA TA TA TA TA TA TA TT
143001 AT * 15 28/30 AT AT AT AT AT GG AT AT AT AT AT AT AT AT AT
153252 TG * 12 22/24 TG TG TA TG TG TT TG TG TG TG TG TG
155889 GT * 15 27/30 GT CT GT GT GA GT GT GT GT GT GT GT GT GT GG
159542 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT GC GA
175491 GT * 10 18/20 GT GT GT GT GT GT GG GT GT GC
175526 TG * 12 23/24 TG TG TG TG TG TG TG TG TG TG CG TG
175699 GT * 14 26/28 GT GT GC GT GT GT GT GT GT GT GT GT TT GT
176878 TG * 12 22/24 TG TG TT TG TG TG TG TG TG TG TG TA
177060 GT * 15 27/30 GT GT AT GT AT GT GT GT GT GT GT GT GT GT GC
177245 AC * 16 30/32 AC AG AC AC AC AC AC AC CC AC AC AC AC AC AC AC
177628 CA * 14 26/28 CA CA CA CA CA AA CA TA CA CA CA CA CA CA
177825 GA * 13 24/26 GA CA TA GA GA GA GA GA GA GA GA GA GA
189521 GT * 12 22/24 GT GC GT GT GT GT AT GT GT GT GT GT
189656 CA * 12 22/24 CA AA CA CA CA CA CA CA CA CA CG CA
194977 TG * 27 49/54 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG GG AA TA TC TG TG
195665 TG * 14 26/28 TG TG TG TG TG TG TG TG TG TG TG AT TG TG
196712 TG * 10 18/20 TG TG TG TG TG TG TG TG TG GA
198035 AT * 15 27/30 AT TT AT AT AT AT AT AT AT AT AT AT AT AA GT
212393 GT * 18 33/36 GT GT GT GC GT GT GT GA GT GT GT GT GT GT CT GT GT GT
212647 AT * 18 33/36 AT CC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT
213907 GT * 12 22/24 GT AT GT GT GT GT GT GT GT CT GT GT
214420 TG * 27 49/54 TG TG TT TG TA TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG GT TG AG
220416 AT * 12 22/24 AT AT AT AT AT AT AT AT AT TT AT AG
238827 AT * 13 24/26 AT AT AT AT AT TT AT AT AT AT AT AT AG
251262 AC * 10 18/20 AC AA AC AC AC AC AC AC AC AA
255675 CA * 11 21/22 CA CA CA CA CA CA CA CA CA CA GA
259636 AG * 12 22/24 AG AG AG AG AG AG TG AG AG AG AG GG
262793 GT * 21 38/42 GT GT GT GC TT GT GT GT GT GT GT GT GT GT GT GT GA GT GT GT CT
264030 AT * 11 20/22 AT AT AT AT AT AT AT AT AT GT AA
269136 AT * 14 26/28 AT CT AT AT AT AC AT AT AT AT AT AT AT AT
271391 AC * 11 20/22 AC AC AC AC AC AC AC AG AC AC AT
275491 TG * 13 25/26 TG TG TG TG TG TG TG TG TG TG TG AG TG
286985 CT * 13 24/26 CT CT CT TT CT CT CT CT CT CT CT CT CC
-----------------------------------------------------------------------------------------
Total sequence length......................... 300205
Total number of repeats detected.............. 58
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 6 3 1 2 7 8 6 7 0 1 0 0
15 to 19 5 2 0 1 1 1 0 3 0 0 0 0
20 to 24 0 0 0 0 0 0 0 1 0 0 0 0
25 to 29 1 0 0 0 0 0 2 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 12 5 1 3 8 9 8 11 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
12 AT + 5 TA = 17
1 AG + 3 GA + 1 CT + 0 TC = 5
11 GT + 8 TG + 9 CA + 8 AC = 36
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7290316|gb|AE003424.1|AE003424 Drosophila melanogaster genomic scaffold 142000013386054 section 8 of 35, complete sequence
Position Repeat Coverage Repeat
8442 TA * 10 18/20 TA TA TA TA TA TA TA TT TA CA
16423 AT * 13 24/26 AT CT AT AA AT AT AT AT AT AT AT AT AT
17193 GT * 10 18/20 GT GT GT GT GT GT CT GT TT GT
27534 GT * 10 18/20 GT TT GT GT GT GT GC GT GT GT
27822 TG * 10 19/20 TG TG CG TG TG TG TG TG TG TG
30763 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA CT GA
41914 AT * 10 18/20 AT AT AT AT AT AA AT AC AT AT
91312 GT * 11 20/22 GT CT GT GT GT GC GT GT GT GT GT
98774 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CA GG
112708 AC * 11 20/22 AC AC AC AC AC AC AT GC AC AC AC
112942 TC * 11 20/22 TC TC TC TC TC GC TC TC TC TT TC
123340 TA * 15 27/30 TA TA TA TA TA TG TA TA TA TA TA TA TA TG TG
123376 TA * 10 18/20 TA TA TA TA TA TG TA TA TA TG
136932 GA * 11 20/22 GA GA CA AA GA GA GA GA GA GA GA
150720 AT * 13 24/26 AT AT GT AT AT AT AT CT AT AT AT AT AT
154311 CA * 10 18/20 CA CA CA CA CG CA CA CA AA CA
158263 TA * 10 18/20 TA TA TA TA TA TA TA TA TG TG
163463 AC * 10 19/20 AC AC AC AC AC AC AC AC AC AA
173487 TA * 10 18/20 TA TA TA TG TA TA TA TA TA TT
174222 TG * 10 18/20 TG TG TG TG TG TG TG TG TG AA
179451 AT * 10 18/20 AT AT AT AT GT AT AT AT GT AT
186894 AC * 15 27/30 AC AC AC AC AC AC TC GC AC AC AC AC AC AC AG
191715 GT * 11 20/22 GT GT GT GT GT GT GT GT GT GT CC
194031 TA * 13 25/26 TA TA TA CA TA TA TA TA TA TA TA TA TA
195697 TG * 15 27/30 TG CG TG TG TG TG TG TG TG TG TG TG TG TG GC
202153 AC * 21 38/42 AC AG AC AG AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC CG
207145 TG * 12 22/24 TG CA TG TG TG TG TG TG TG TG TG TG
208865 TC * 10 18/20 TC GT TC TC TC TC TC TC TC TC
209994 TA * 10 18/20 TA TA TA TG TA TA TG TA TA TA
210387 TG * 14 26/28 TG TG TG TG TG TG TG TG TG TG TG TG TG GT
214435 TA * 13 24/26 TA AA TA TA TA TA TA TA TA TA CA TA TA
231968 CA * 14 26/28 CA CA CA TA CA CA CA CA CA CA CA CA CA TA
277664 TA * 12 22/24 TA CA TA TA TA TA TA TA CA TA TA TA
277923 GT * 13 24/26 GT AT GT GT GT GT GT GT GT GT GT AT GT
278201 GT * 16 30/32 GT GT AC GT GT GT GT GT GT GT GT GT GT GT GT GT
279573 AG * 13 24/26 AG AA AG AG AG AG AG AG AG GG AG AG AG
280865 GT * 10 19/20 GT GT GT GT GT GT GT GT GT GA
282646 CA * 11 21/22 CA CA CA CA CA CA CA CA CA CA CC
283987 TC * 11 20/22 TC TC TC TC TC TC TC TC GT TC TC
286128 TC * 12 23/24 TC TC TC TC TC TC TC TC TG TC TC TC
286792 TG * 13 24/26 TG TG TG TG TG TG TG TG TA TT TG TG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 289090
Total number of repeats detected.............. 41
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 8 1 1 2 5 5 6 4 0 0 0
15 to 19 0 1 0 0 1 0 1 1 0 0 0 0
20 to 24 0 0 0 0 1 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 9 1 1 4 5 6 7 4 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 9 TA = 13
1 AG + 1 GA + 0 CT + 4 TC = 6
7 GT + 6 TG + 5 CA + 4 AC = 22
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7290252|gb|AE003423.1|AE003423 Drosophila melanogaster genomic scaffold 142000013386054 section 7 of 35, complete sequence
Position Repeat Coverage Repeat
21161 TG * 10 19/20 TG TG TG TG TG TG TG TG TG TT
27872 CA * 11 20/22 CA CA CA CT CA CA CA CA CA CA CG
31961 CT * 10 18/20 CT CT CC AT CT CT CT CT CT CT
39787 GT * 10 18/20 GT GT GT GT GT GT GT GT GT TG
46623 CT * 13 24/26 CT AT CT CT GT CT CT CT CT CT CT CT CT
56784 TG * 10 18/20 TG AA TG TG TG TG TG TG TG TG
57966 CT * 12 22/24 CT TT CT CT CT CT CT CT CA CT CT CT
68503 CA * 10 18/20 CA CA CA CA CA CA CA GA CA CG
69907 GT * 17 31/34 GT GT GT GT GT GT GT GT GT GT GT GT GC TT GC GT GT
71789 CT * 10 19/20 CT CT CT CT CT CT CG CT CT CT
75449 CA * 10 18/20 CA CA CA CA CA CA TA CA CA AA
76091 GT * 10 18/20 GT GT GT GC GA GT GT GT GT GT
83653 AT * 10 18/20 AT AT AC AT AT AT AT AT TT AT
84199 TA * 15 27/30 TA TA TA TA TA TA TA TC TA TA TA TA TA TA GC
92234 AC * 10 18/20 AC AC CC AC AA AC AC AC AC AC
100247 GT * 10 18/20 GT GT GT GT GT GA GT GT GA GT
100382 AT * 10 18/20 AT AT AT AC AT AT AT AC AT AT
155025 CA * 13 24/26 CA CA CA CA CA CA CA CA CT CT CA CA CA
178262 AT * 13 24/26 AT AT AT AT TG AT AT AT AT AT AT AT AT
188407 CT * 27 50/54 CT CG CT CA CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT TG CT
192016 CA * 10 18/20 CA CA CA CA CA CA CA TA CA CC
211363 TA * 21 38/42 TA AA TA TA TG TA TA TA TA TA TA TA TA TA TA TA TA TA TA GA AA
216701 GA * 13 24/26 GA GA GA GA GA GA GA GA GA GT GA GT GA
222610 AT * 13 24/26 AT AT AT AT AC AT AT AT AT AT AT AT GT
226625 AG * 11 20/22 AG AG AG AG AG AG TG AG AG AG CG
227940 AC * 16 29/32 AC AT AC AC AC AC AC AC AC AC AC AC AC AC GC AA
228793 AC * 12 23/24 AC AC AC AT AC AC AC AC AC AC AC AC
229169 CT * 11 20/22 CT CT CT CT CT CC CT CT CT CT GT
232383 GT * 10 18/20 GT GT AT GT GA GT GT GT GT GT
234926 TG * 12 23/24 TG TG TG TG TG TG TG TG TA TG TG TG
235376 AG * 13 25/26 AG AC AG AG AG AG AG AG AG AG AG AG AG
237034 CT * 10 18/20 CT CT CT CT CT CT CC AT CT CT
239096 CA * 13 25/26 CA CA CA CA CA CA CA CA CA CA CA AA CA
250042 AC * 12 22/24 AC AC AC GC AC AC AC AC AC AC AC TC
252721 GT * 11 20/22 GT GT TG GT GT GT GT GT GT GT GT
255078 AC * 10 18/20 AC AC AC AC AC AC AC AC AT GC
255928 GT * 14 26/28 GT GT GT GT GT GT GT GT GT GT GT GT GC GA
269183 GA * 13 24/26 GA GA GA GA GG GA GA GA GA GA GA GA GT
271881 TA * 10 18/20 TA AG TA TA TA TA TA TA TA TA
272587 TA * 10 19/20 TA TA TA TA CA TA TA TA TA TA
273307 TG * 12 22/24 TG TT TG TG TG CG TG TG TG TG TG TG
276290 AG * 12 22/24 AG TG AA AG AG AG AG AG AG AG AG AG
277925 AT * 13 24/26 AT AC AT AT AT AT AT AT AG AT AT AT AT
282154 TC * 12 22/24 TC TC TC TC TC TC TC AC TC TC AC TC
288805 TC * 17 31/34 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TT AG
291612 TG * 17 31/34 TG TA TG TG TG TG TG TG TG TG TG TG TG TG TT TG GG
-----------------------------------------------------------------------------------------
Total sequence length......................... 291976
Total number of repeats detected.............. 46
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 2 3 2 4 6 4 6 1 6 0 0
15 to 19 0 1 0 0 1 0 1 1 1 0 0 0
20 to 24 0 1 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 1 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 4 3 2 5 6 5 7 2 7 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 4 TA = 9
3 AG + 2 GA + 7 CT + 2 TC = 14
7 GT + 5 TG + 6 CA + 5 AC = 23
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7290202|gb|AE003422.1|AE003422 Drosophila melanogaster genomic scaffold 142000013386054 section 6 of 35, complete sequence
Position Repeat Coverage Repeat
877 TG * 17 32/34 TG TG TG TG TG TG TG TG TG TG TG TG TA TG TG TT TG
4209 AC * 15 27/30 AC AC AC AC CC AC AC CC AC AC AC AC AC AC GC
8791 GT * 13 25/26 GT GT GT GT GT GT GT GT GT GT AT GT GT
39457 TG * 11 20/22 TG GG TG TG GG TG TG TG TG TG TG
69175 AC * 11 21/22 AC AC AC AC AC AC AC AC AC GC AC
84780 GT * 17 31/34 GT GC GT GT GT GT GT GT GT GT GT GT GT GT GT GT AC
116481 TA * 25 45/50 TA TA TA TA TA TA AA TA TA TA TA TA TA TA TA TC TA TA TA TA TA AA TG TA CA
134428 CA * 10 18/20 CA TA CA CA CA CA CA TA CA CA
151212 AT * 10 18/20 AT AT AT AT TC AT AT AT AT AT
157755 GT * 11 20/22 GT GT GT GC GT GT GC GT GT GT GT
176389 TG * 10 18/20 TG TG TG TG TG TG TA CG TG TG
177567 TC * 10 18/20 TC TC TT GC TC TC TC TC TC TC
178091 TG * 22 40/44 TG TG TG TG TG CT TG TG TG TG TG TG TG TG TG TG TG TG TG TG AG TA
181092 GT * 10 18/20 GT GT GT GT GT GT GT GC GT TT
181435 AC * 10 18/20 AC AC GC AC AC AC AC AC AC AG
182602 CA * 11 20/22 CA CC CA CA CA AA CA CA CA CA CA
185799 TG * 12 22/24 TG TA TA TG TG TG TG TG TG TG TG TG
187053 CA * 11 20/22 CA CA CA TA CC CA CA CA CA CA CA
198800 GA * 10 18/20 GA GA GA GA GA AA GA GC GA GA
199451 TC * 17 32/34 TC TC TC TC TC TC TC GC TC TC TC TC TC TC TC TC TG
200922 CA * 12 22/24 CA CA CA CA TG CA CA CA CA CA CA CA
201607 CA * 12 22/24 CA CT CA CA CA CA CA CA CA CA TA CA
206681 AC * 10 18/20 AC AC AC AC TC AC AC TC AC AC
208197 TG * 13 25/26 TG TG AG TG TG TG TG TG TG TG TG TG TG
208368 CA * 11 20/22 CA GA CT CA CA CA CA CA CA CA CA
209650 TG * 12 22/24 TG TG TG TG TG TG CG TG TG TG TG TC
210505 GA * 11 20/22 GA GA GA GA GA GA GA GA GA GC GC
215462 CA * 11 20/22 CA CA CA CA CG CA CA CA CA CA CT
216151 CA * 10 18/20 CA CA AA CA CA CA CA CA CA CT
217748 TC * 10 18/20 TC TA TC TC TA TC TC TC TC TC
223145 AG * 12 22/24 AG CG AG AG AT AG AG AG AG AG AG AG
226315 AG * 13 24/26 AG GG AG AG AG AG AG GG AG AG AG AG AG
226426 GT * 12 22/24 GT GT GC CT GT GT GT GT GT GT GT GT
226577 GA * 11 21/22 GA GA GA GG GA GA GA GA GA GA GA
227282 AC * 12 22/24 AC AC AC GC AC AC AC AC AA AC AC AC
228803 CA * 14 26/28 CA CA CA CA CA CA CA CA CA CA CA CA CA TT
229407 CA * 15 27/30 CA CA CA CA CA AA CA CA CA CA CA CA CA CT GA
230058 CA * 11 20/22 CA CA CA CA CA CG CA CG CA CA CA
231826 TA * 10 18/20 TA TA TA TA TA TA AA TA TA GA
239158 CA * 18 34/36 CA CA CA CT CA TA CA CA CA CA CA CA CA CA CA CA CA CA
257465 AC * 10 19/20 AC AC AC AC AC AC AC AC AC AT
258173 AT * 12 22/24 AT AT GC AT AT AT AT AT AT AT AT AT
259355 TC * 10 18/20 TC TC TC TC TC TA TT TC TC TC
270495 AT * 11 20/22 AT AT AT AT AT AT AA AG AT AT AT
270541 CA * 10 18/20 CA CG CA CA CA CA CA CA CA CC
286289 CA * 12 23/24 CA CA CA CA CA AA CA CA CA CA CA CA
289607 AT * 10 18/20 AT AT AT AT CT AT AT CT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 300739
Total number of repeats detected.............. 47
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 1 2 3 5 12 5 4 3 0 0 0
15 to 19 0 0 0 0 1 2 1 1 1 0 0 0
20 to 24 0 0 0 0 0 0 1 0 0 0 0 0
25 to 29 0 1 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 2 2 3 6 14 7 5 4 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 2 TA = 6
2 AG + 3 GA + 0 CT + 4 TC = 9
5 GT + 7 TG + 14 CA + 6 AC = 32
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7290163|gb|AE003421.1|AE003421 Drosophila melanogaster genomic scaffold 142000013386054 section 5 of 35, complete sequence
Position Repeat Coverage Repeat
18312 CA * 10 18/20 CA CG TA CA CA CA CA CA CA CA
25967 AG * 11 20/22 AG CG AC AG AG AG AG AG AG AG AG
44165 AC * 11 20/22 AC AA AT AC AC AC AC AC AC AC AC
46426 AC * 10 18/20 AC AC AT AC AC AC AC AC AC AT
65581 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG CA
68430 GT * 13 24/26 GT GT GT GT GT GT GC GT GT GA GT GT GT
72884 TG * 20 37/40 TG TG TG TG TG TG TG TG TG TG TG CG TG CG TG TG TG TG TG CG
99406 GT * 11 20/22 GT GT GG GT GT GT GT GT GT GT GC
100028 TA * 11 20/22 TA TG TA GA TA TA TA TA TA TA TA
100429 GT * 11 20/22 GT TA GT GT GT GT GT GT GT GT GT
101257 GA * 13 24/26 GA GT AA GA GA GA GA GA GA GA GA GA GA
103609 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AC AC TG
108312 CA * 10 18/20 CA CA CG CA CA CA CA CA TA CA
108359 GT * 11 20/22 GT GT GT GT GT GT GT GT GT GC GC
108632 CA * 11 21/22 CA CA CA CA CA CA CA CA CA CA CG
111012 CA * 10 18/20 CA CA CA CG CA CA CA AA CA CA
113368 GT * 11 20/22 GT AT GT GC GT GT GT GT GT GT GT
116029 GT * 15 27/30 GT GT TT GT GT GT GT GT GT GT GT GT GT GC GA
117179 TG * 10 18/20 TG AG TG TG TG TA TG TG TG TG
119462 TC * 10 18/20 TC TC TC TC TC TC TC TG TC TG
119482 TG * 27 49/54 TG TG TG TG TG TG TG GG TG TG TG TG TG TG TG TG TG TG TG GG TG TG TG TG TG TC GC
120144 CA * 18 33/36 CA CA CA CA CA CA CA CA CA CA CA GA CA CA CA CA TA GA
121573 TC * 10 18/20 TC TC GC TC TC TG TC TC TC TC
124417 GT * 25 45/50 GT GT GT GT GT CT GT GT GT GT GT GT GT GT GT GT GA GT GA GT GT GT GT GC CT
125690 TG * 10 18/20 TG TG GG TG TG TG TA TG TG TG
125894 CA * 11 20/22 CA CA CC CA AA CA CA CA CA CA CA
128153 GT * 10 19/20 GT GT GT GT GT GT GG GT GT GT
128659 AC * 10 18/20 AC AC AC AC AT AC AC AC AC TC
130963 TG * 11 20/22 TG TG TG TG TG TG TG TG TA AG TG
131583 TG * 15 27/30 TG TG TG CA TG TG TG TG TG TG TG TG TG TG CG
133628 GT * 10 18/20 GT CT GT GT GT GT GT AT GT GT
136863 AC * 12 22/24 AC AC AC AC AC AC AT AC AC AC AC AG
137014 AC * 16 29/32 AC CC CC AC AC AC AC AC AC AC AC AC AC AC AC AA
138056 CA * 10 18/20 CA CA CA GC CA CA CA CA CA CA
138328 CA * 10 18/20 CA CA CA CA CA CA CA CA CA GC
141044 CA * 13 24/26 CA AA CA CA CA CA CA CA CA CA CA CG CA
142512 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA CA TT
142732 TG * 11 20/22 TG TG TG TG TG CG AG TG TG TG TG
143098 TG * 12 22/24 TG TG TG TG TG GG TG TG TG TT TG TG
144730 AC * 12 22/24 AC AC AC AC AC AC AC AC GC AC GC AC
146460 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CG CT
146804 TG * 13 24/26 TG TG TG TG TG TA TG TG CG TG TG TG TG
148830 TC * 10 18/20 TC TC AC TC TC TC TC TC GC TC
151587 AC * 10 18/20 AC AT AC AC AC AC AC AC AC AT
160287 GT * 10 18/20 GT GT GT GT GT GT GT GC GG GT
160562 GT * 10 18/20 GT TT GT GT GT GT GT GT GT GC
162005 GA * 10 18/20 GA GA GA GA CA GA GA GA GA GG
162030 AG * 17 31/34 AG AG AG AG AG AG AG AG AG AG AG AG AG GG AG AG GT
171531 CA * 11 20/22 CA CA TA CA CA CA CA CG CA CA CA
172240 TA * 10 18/20 TA TA TA TA CA TA TA TA TA TT
172286 AC * 11 20/22 AC AC AA AC AC AC AC AC AA AC AC
173075 CA * 17 31/34 CA CC CA GA CA CA CA CA CA CA CA CA CA CA CA AA CA
173728 TC * 13 24/26 TC TT TC TG TC TC TC TC TC TC TC TC TC
173754 CT * 12 22/24 CT CT CT CT CT CT AT CT CT CT CT CC
176002 AC * 10 18/20 AC AC AC GC AC AC GC AC AC AC
176261 AT * 11 20/22 AT AT AT AT AT AT AT AC AT AT AA
180843 AC * 22 40/44 AC AC AC CG AC AC AC AC AC AC AC AC AC AC AC AC AC AC GC AC AC TC
186828 AT * 11 20/22 AT AT AT AC AT AT AT AT AT AT AC
187835 CT * 11 20/22 CT CT CG CT CG CT CT CT CT CT CT
191479 AC * 12 22/24 AC AC AC TC AC AC AC AC AC AA AC AC
191800 AC * 12 22/24 AC AA AC AA AC AC AC AC AC AC AC AC
204578 GT * 10 18/20 GT GT GA GT GT GT AT GT GT GT
224893 TA * 12 22/24 TA CA TG TA TA TA TA TA TA TA TA TA
230057 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT TG GT
230570 GT * 11 20/22 GT GT GT GT GT TT GT GT GT GG GT
236794 CA * 12 22/24 CA CC CA CC CA CA CA CA CA CA CA CA
236886 CA * 12 22/24 CA CA GA CA CA GA CA CA CA CA CA CA
242048 TG * 10 18/20 TG CG TG CG TG TG TG TG TG TG
245053 AC * 12 22/24 AC AC AC AC AC AC AC AC TC GC AC AC
245940 GT * 10 18/20 GT GT GT GT GT GT TC GT GT GT
245983 TG * 15 27/30 TG TG TG TG TG TG TG CG TG TG TG TG TG GG GG
246674 CA * 11 20/22 CA AG CA CA CA CA CA CA CA CA CA
248374 TG * 18 34/36 TG TG TG TC TG TG TG TG TG CG TG TG TG TG TG TG TG TG
254927 CA * 10 18/20 CA CA CA CA GA CA CA CC CA CA
255257 CA * 10 18/20 CA CA CA CC CA CC CA CA CA CA
255499 AC * 11 20/22 AC CC AC AC AC AC AC AC AC AC AA
255537 AC * 10 18/20 AC AC AC AC AC AT AC AC CC AC
262959 GT * 10 18/20 GT GT GT GT GT GT GT GT GT TC
264817 CA * 13 25/26 CA CA CA CA CA CA CA CA CA CA CA CC CA
265039 GT * 15 27/30 GT GT GT GT GT GT GT GT GT GT GT GT GC GA GG
266765 AT * 21 38/42 AT TT AT AT AT AT AT AT AT AT AT AT AT AT AT AT CT AT AT AT CA
275991 TA * 10 18/20 TA TA TG TA TT TA TA TA TA TA
286319 TG * 14 26/28 TG TG TG TT TT TG TG TG TG TG TG TG TG TG
287499 TG * 13 24/26 TG TG TG CG TG TG TG GG TG TG TG TG TG
290742 CA * 13 25/26 CA CA CA CA CA CA CA CA CA CA CA CA CT
295042 AT * 10 18/20 AT AT AT AT AT GT AT GT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 296497
Total number of repeats detected.............. 86
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 3 4 1 2 14 18 10 14 4 2 0 0
15 to 19 0 0 1 0 1 2 3 2 0 0 0 0
20 to 24 1 0 0 0 1 0 1 0 0 0 0 0
25 to 29 0 0 0 0 0 0 1 1 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 4 4 2 2 16 20 15 17 4 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
4 AT + 4 TA = 8
2 AG + 2 GA + 2 CT + 4 TC = 10
17 GT + 15 TG + 20 CA + 16 AC = 68
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7290119|gb|AE003420.1|AE003420 Drosophila melanogaster genomic scaffold 142000013386054 section 4 of 35, complete sequence
Position Repeat Coverage Repeat
3200 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG TG CT
16594 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TT TA
16856 GT * 10 19/20 GT GT GT GT GT GT GT GT GT GC
21277 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA AA GA
38404 AT * 12 23/24 AT AT AT AT AA AT AT AT AT AT AT AT
50939 GT * 11 20/22 GT GT TT GA GT GT GT GT GT GT GT
63961 CA * 11 20/22 CA CA CA CA CA CA CA CA CC AA CA
64872 TA * 11 20/22 TA TA TA TG TA TG TA TA TA TA TA
72457 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TG CT
76961 AC * 13 24/26 AC AC AC AC AC AC AC AA AC AC AC AT AC
77513 AT * 14 26/28 AT AT AT AC AT AT AT TT AT AT AT AT AT AT
79611 CA * 11 21/22 CA CA TA CA CA CA CA CA CA CA CA
81566 AC * 10 18/20 AC AC AC AC AC AC AT AT AC AC
81753 GT * 11 20/22 GT GT GG GT GT GT GT AT GT GT GT
92369 TA * 23 42/46 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA CA TA TA TA TA TA CT
97115 AT * 12 23/24 AT AT AT AT AT AT GT AT AT AT AT AT
97452 AG * 11 20/22 AG TG AG AG AG AG AG AG AG AG GG
100822 TG * 17 32/34 TG TG TG TG TG TG TG TG TG TG TG TG TG TA TG TT TG
100896 CA * 13 24/26 CA CA CA CA CA CA CA TA CA CA CA CA CT
105776 CA * 11 20/22 CA GG CA CA CA CA CA CA CA CA CA
106320 AT * 10 18/20 AT AT AT AT AT AT AT AT TT AA
111569 TA * 10 18/20 TA TA TA TG TA CA TA TA TA TA
112666 AT * 15 27/30 AT AT AT AT AT AT AA AT AT GT AT AT AT AT AG
124050 GA * 11 20/22 GA GA GA GA GA GA GA GA GA GG AA
169593 CT * 10 18/20 CT CT TT CT CT CT CT CT CA CT
216377 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AT AA
217931 GA * 11 20/22 GA GA GA GA GA GA GA AA GA GA GG
223831 GT * 11 20/22 GT GT GT GT GT TT GT GT GT TT GT
224073 CA * 15 27/30 CA CA CA CA CA CT CA CA CA CA CA CA CT CA TA
229744 GT * 11 21/22 GT GT GT GT AT GT GT GT GT GT GT
230471 AC * 13 24/26 AC AC AC AC AC AT AC AC AC AC AC AC TC
230657 TC * 19 35/38 TC CC GC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TT
230844 GT * 13 24/26 GT GC CT GT GT GT GT GT GT GT GT GT GT
252161 AG * 11 20/22 AG AG CG AG AG AG AG AC AG AG AG
263803 TG * 20 37/40 TG TG GG TG TG TG TG TG TG TG TG TG TG TG TG TG TG GG CG TG
265185 AC * 11 20/22 AC AC AC AC AC AC AT AC AC AC CC
293412 TA * 10 18/20 TA TA TA TG AA TA TA TA TA TA
293433 AT * 11 20/22 AT GA AT AT AT AT AT AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 302855
Total number of repeats detected.............. 38
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 3 2 2 5 5 3 6 0 1 0 0
15 to 19 1 0 0 0 0 1 1 0 1 0 0 0
20 to 24 0 1 0 0 0 0 1 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 6 4 2 2 5 6 5 6 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
6 AT + 4 TA = 10
2 AG + 2 GA + 1 CT + 1 TC = 6
6 GT + 5 TG + 6 CA + 5 AC = 22
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7290091|gb|AE003419.1|AE003419 Drosophila melanogaster genomic scaffold 142000013386054 section 3 of 35, complete sequence
Position Repeat Coverage Repeat
37358 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA CA AG
69450 CA * 11 20/22 CA CA CA CA CA CA CA CA CA GA GA
77334 AT * 17 31/34 AT AT AT AT AT AT AT AT AT AT AT AT AT AG TT AA AT
89537 AC * 13 24/26 AC AC GC AC AC AC AC AC AC AC AC AC GC
92530 GT * 13 24/26 GT GT GT GT GT AT GT GT GT GT GT GT GA
108773 CA * 10 18/20 CA CA CC CA CA CA CA CA CA CT
113073 AC * 16 29/32 AC AC AC AC AC AC AC AC AC AC AC AC AC AT CC AA
114249 GT * 10 18/20 GT GT GA GT GT GT GT GT GA GT
114427 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA GA TA
128088 TG * 17 32/34 TG CG TG CG TG TG TG TG TG TG TG TG TG TG TG TG TG
136421 GT * 18 33/36 GT AT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GC AT
137050 GA * 10 18/20 GA AA TA GA GA GA GA GA GA GA
142583 AC * 10 18/20 AC AC AT AC AT AC AC AC AC AC
146285 TG * 14 26/28 TG TG TG TG TG AG CG TG TG TG TG TG TG TG
168431 AT * 12 22/24 AT AT AT AG AA AT AT AT AT AT AT AT
179905 AC * 11 21/22 AC AC AC AC AC AC AC AC AC AC AT
191447 AT * 10 18/20 AT AT AG TT AT AT AT AT AT AT
203862 TG * 10 18/20 TG CG TG TG TG TG TG CG TG TG
205018 AT * 10 18/20 AT AT AT AT AT GT AT TT AT AT
209121 TG * 11 20/22 TG TG TG TG TG TG TG TG TA TG TT
211561 AT * 10 18/20 AT AT AT AT AT AA AT AC AT AT
221038 TG * 13 24/26 TG TA AG TG TG TG TG TG TG TG TG TG TG
221066 TG * 12 22/24 TG TG TT TG TG TT TG TG TG TG TG TG
224864 AC * 10 19/20 AC AC AC AC AC AC AC AC AC AT
229203 AT * 10 19/20 AT AT AT AT AT AT AT AT AT TT
269681 GA * 13 24/26 GA GA GA GA GA GA GA GA GA GA GG GA GG
283934 CT * 10 19/20 CT CT CT CT CT CT CT CT CT CA
289663 AT * 13 24/26 AT AT AT AT TT CT AT AT AT AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 299275
Total number of repeats detected.............. 28
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 6 0 0 2 4 4 5 2 0 1 0 0
15 to 19 1 0 0 0 1 0 1 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 7 0 0 2 5 4 6 3 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
7 AT + 0 TA = 7
0 AG + 2 GA + 1 CT + 0 TC = 3
3 GT + 6 TG + 4 CA + 5 AC = 18
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7290053|gb|AE003418.1|AE003418 Drosophila melanogaster genomic scaffold 142000013386054 section 2 of 35, complete sequence
Position Repeat Coverage Repeat
26518 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA CG CT
26543 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA CT GA
38851 AT * 31 56/62 AT AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT GC AT AT TC
40314 TG * 11 20/22 TG TG TG CG TG TG TG TG TT TG TG
85863 TA * 10 18/20 TA TA TA TA TG TA TA TA TT TA
104006 AG * 10 18/20 AG AG AG AG AG AG AG AC CG AG
104779 AC * 10 18/20 AC AC AC AC TC AC AC AC AC AT
125628 CA * 20 36/40 CA CA CG CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA AT CC
130869 CA * 21 38/42 CA CA CA CA CA CA CA CA CA TA CA CA CA CA CA CA CA CA CA AA GG
134429 GT * 12 22/24 GT GT GT GT AT GT GT GC GT GT GT GT
164490 AT * 11 20/22 AT AT AT AC AT AT TT AT AT AT AT
166423 TG * 12 22/24 TG TG TG TC TG TG TG TG TG TG TA TG
170014 GA * 14 26/28 GA AA GA GA GA GA GA GA GA GA GA GA GA TA
191887 GT * 14 26/28 GT GT GC GT GT GT GT GT GT GT GT GT GT GG
214412 AT * 13 24/26 AT AC AT AC AT AT AT AT AT AT AT AT AT
261980 TA * 10 18/20 TA TA TA TT TA TA TA TA TA TG
271949 AT * 10 18/20 AT AT AT AT AT AT AC AT AT GT
281646 AT * 10 18/20 AT AT AT AT AT AA AT AC AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 299970
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 4 2 1 1 1 2 2 2 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 2 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 1 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 2 1 1 1 4 2 2 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 2 TA = 7
1 AG + 1 GA + 0 CT + 0 TC = 2
2 GT + 2 TG + 4 CA + 1 AC = 9
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7290018|gb|AE003417.1|AE003417 Drosophila melanogaster genomic scaffold 142000013386054 section 1 of 35, complete sequence
Position Repeat Coverage Repeat
4349 TG * 10 18/20 TG TG TG TG TG TT TG TG TG TA
34195 AT * 11 20/22 AT AA GT AT AT AT AT AT AT AT AT
40004 TA * 10 18/20 TA TA TA TA TG TA TT TA TA TA
99167 GT * 12 22/24 GT GT GT GC GT GT GT GT GT GC GT GT
103771 TA * 11 20/22 TA TA TG TA TA TG TA TA TA TA TA
149830 AT * 13 25/26 AT AT AT AT AT AT AT AT AT AT AT AT AC
151877 GA * 11 20/22 GA GA CA GA GA AA GA GA GA GA GA
151953 TC * 12 22/24 TC AC TC TC TC TC TC TC TT TC TC TC
162055 AT * 10 18/20 AT AT AT AC AT AC AT AT AT AT
170583 AT * 10 18/20 AT AT AT GT AT AT AT TT AT AT
232776 TA * 19 35/38 TA TA CA AA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT
277996 AG * 11 20/22 AG AG AG AG AG CG AG AG AG AA AG
278645 TC * 18 33/36 TC TA TC TC TC TC TC TC TC TC TA TC TC TC TC TC TA TC
279720 AT * 10 18/20 AT AT AT AT AT AT AT AT AT GG
286650 CA * 11 20/22 CA CA CA CA CA TA CA CA CA CA GA
305962 TC * 12 22/24 TC TC TC TC TC TC TC TC TC TC TG TT
312618 AG * 16 29/32 AG AG AG AG AG AA AG AG AG AG AG AG GG AG AG GG
313117 TG * 12 22/24 TG TG TC TG TG TG TG TA TG TG TG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 314661
Total number of repeats detected.............. 18
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 2 1 1 0 1 2 1 2 0 0 0
15 to 19 0 1 1 0 0 0 0 0 1 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 5 3 2 1 0 1 2 1 3 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
5 AT + 3 TA = 8
2 AG + 1 GA + 0 CT + 3 TC = 6
1 GT + 2 TG + 1 CA + 0 AC = 4
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289092|gb|AE002987.1|AE002987 Drosophila melanogaster genomic scaffold 142000013385379, complete sequence
Position Repeat Coverage Repeat
18464 AT * 10 18/20 AT AT TT AT AT AT TT AT AT AT
20111 AT * 10 18/20 AT AT AT AT AT CT AT AT AT AA
-----------------------------------------------------------------------------------------
Total sequence length......................... 71090
Total number of repeats detected.............. 2
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 0 0 0 0 0 0 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 2 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
2 AT + 0 TA = 2
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 0 TG + 0 CA + 0 AC = 0
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289791|gb|AE002991.1|AE002991 Drosophila melanogaster genomic scaffold 142000013385979, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 7017
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7316106|gb|AE002593.1|AE002593 Drosophila melanogaster genomic scaffold 142000013386053, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 0
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7293636|gb|AE003513.1|AE003513 Drosophila melanogaster genomic scaffold 142000013386053 section 30 of 30, complete sequence
Position Repeat Coverage Repeat
175 TA * 13 24/26 TA TA TA CA TA TA TA TA TA TA TA TT TA
7308 TA * 11 20/22 TA TA TA TA TA TA TA TG TA TG TA
13806 TA * 10 18/20 TA TA TA AA TA TA TA TG TA TA
19069 GT * 15 27/30 GT GG GT GC GT GT GT GT GT GT GT GT GT GT AT
20067 GA * 10 18/20 GA GA GA GA GA GA GC AA GA GA
20489 CA * 16 29/32 CA CT CA CA CA AA CA CA CA CA CA CA CA CA CA CC
20598 AC * 10 18/20 AC GC AC AC AC AC AC AC AG AC
20651 GT * 11 21/22 GT GT GT AT GT GT GT GT GT GT GT
20719 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA GG CA
20843 AC * 10 18/20 AC CC AC AC AC AG AC AC AC AC
27536 AT * 17 31/34 AT AT AT AT AT TG AT AT AT AT AT AT AT AT AT GT AT
35634 AT * 12 22/24 AT AT AC AT AT AT AT AT AT AT AT AA
44557 GT * 10 18/20 GT GT AT GT GT GT GT GT GT GC
48522 AT * 12 22/24 AT GT TT AT AT AT AT AT AT AT AT AT
54023 CA * 10 18/20 CA TA CC CA CA CA CA CA CA CA
58367 AT * 10 18/20 AT AT AT AT AT AT AT AT AT GG
64110 GT * 15 28/30 GT GT GC GT GT GT GT GT GT GT GT GT GT GT GC
67872 GT * 10 18/20 GT AT GT GT GT GT GT GT GT AT
72795 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA CA TG
74017 AT * 13 24/26 AT AC AT AT AT GT AT AT AT AT AT AT AT
76137 CA * 17 31/34 CA CA CA CA CA CA CA CA CA CA CA CA CA CG CG CG CA
76927 TA * 16 29/32 TA TA TA TA TC TA TA TG TA TA TA TA TA TA TA TC
80248 TG * 10 18/20 TG CG TG TG TG TG TG GG TG TG
83604 CT * 13 24/26 CT CT CC CT AT CT CT CT CT CT CT CT CT
90209 CA * 13 24/26 CA CA CA CA CG CA CA CA CA CA AA CA CA
91247 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GG GT GG
92277 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC AC AC CG
93171 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA CC CC
94055 TG * 12 22/24 TG TG TG TG CG TG TG TG TG TG TG TT
94745 AC * 29 53/58 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AG AC AC AG AC AA GC AA
95303 AC * 11 20/22 AC GC AC AC AC AC AC CC AC AC AC
97289 CA * 10 18/20 CA CA CA CA CT TA CA CA CA CA
97767 TG * 12 22/24 TG CG TG CG TG TG TG TG TG TG TG TG
111131 AT * 10 18/20 AT AT AT AT AT AT GT AT AT AG
118650 TG * 10 18/20 TG TG TG TG CG TG TG CG TG TG
119648 AT * 10 18/20 AT GT AT AT AT GT AT AT AT AT
125953 CA * 10 19/20 CA CA CA CA CA CA CA CA AA CA
126884 TG * 13 25/26 TG TG TG TG CG TG TG TG TG TG TG TG TG
126921 GT * 12 23/24 GT GA GT GT GT GT GT GT GT GT GT GT
128109 AC * 12 22/24 AC AC AC AC AC AC AC AT AC AC AA AC
129346 GT * 10 18/20 GT GC GT GT GT GT GC GT GT GT
129768 TG * 12 22/24 TG TA TG TG TG TG TG TG TG TG TT TG
131119 GT * 18 34/36 GT GT AT GT TT GT GT GT GT GT GT GT GT GT GT GT GT GT
138898 AC * 10 18/20 AC AC AC AC AC AC AG TC AC AC
139829 AT * 10 18/20 AT AT AA AT AT AT AC AT AT AT
146192 AT * 10 18/20 AT AT AT AT AT AT GT AT GT AT
146394 GT * 15 27/30 GT GT GT GT GT GT GT GT GT GT GT GT GT AT TG
147002 GA * 12 22/24 GA GA GA GG GA GA GA GA GA GA GA GG
157755 GT * 10 18/20 GT GT GT AT GT GT GT GT GT GA
159866 AT * 10 18/20 AT AT AT AT AT AC AT AT AT GT
162457 CA * 13 24/26 CA AA CA CA GA CA CA CA CA CA CA CA CA
185420 GA * 13 24/26 GA GA GA GA GA GA GA GA GA TA GA GA GT
205347 TA * 16 29/32 TA TA TA TA TA TA TA CA TA TA TA TA TA TA TG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 207355
Total number of repeats detected.............. 53
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 9 3 0 3 6 8 6 7 0 1 0 0
15 to 19 1 2 0 0 0 2 0 4 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 1 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 10 5 0 3 7 10 6 11 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
10 AT + 5 TA = 15
0 AG + 3 GA + 1 CT + 0 TC = 4
11 GT + 6 TG + 10 CA + 7 AC = 34
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7293579|gb|AE003512.1|AE003512 Drosophila melanogaster genomic scaffold 142000013386053 section 29 of 30, complete sequence
Position Repeat Coverage Repeat
2744 AT * 11 20/22 AT TT AT AT AT AT AT AT AT AG AT
3042 GT * 25 45/50 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT CT TT AT GT GT TT GT GT GT GG
4491 AT * 14 26/28 AT AT AT AT AT AT AT AT AT AT AT AT AT TG
9338 CA * 10 18/20 CA CA CA CA CA CA CA CA CA TT
18218 TA * 10 18/20 TA TA TA TA TT AA TA TA TA TA
36127 CA * 14 26/28 CA AA CA CA CA CA CA CA CA CA CA CA CA CG
57774 CA * 18 33/36 CA CA CA CA CA CA CA CA CA CA CA CA CT CA CA CT CA TA
57946 GT * 10 18/20 GT GT GT GT GT GT GT GT GT AG
58191 TG * 16 29/32 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TC CT
61351 CA * 10 18/20 CA TA CA CA CA CA CA CA TA CA
65736 AT * 16 30/32 AT GT AT AT AT AT AT AT AT AA AT AT AT AT AT AT
72119 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AC AC
72146 CA * 10 18/20 CA TA CA TA CA CA CA CA CA CA
72368 AT * 15 28/30 AT AC AT AT AT AT AA AT AT AT AT AT AT AT AT
101027 CT * 15 27/30 CT CT TT CT CT CT CT CT CT AT CT CT CT CT AT
103734 TA * 10 18/20 TA CA TA TA AA TA TA TA TA TA
107135 AT * 10 18/20 AT AT AT AT GT AT GT AT AT AT
127147 CA * 10 18/20 CA CA CA CA CA CA CA CA AA CG
132959 AT * 12 22/24 AT AT CT AT AT AT AT AT AT AT AT GT
133900 TG * 10 18/20 TG TG TG TG TG TG TG TG TT TT
134936 AT * 10 18/20 AT AT AT AT AT AT AT AT GC AT
136331 TG * 11 20/22 TG TG TC TA TG TG TG TG TG TG TG
137711 TG * 17 31/34 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG CT TT
143176 AT * 10 18/20 AT GT AT AT AT AT AT AA AT AT
147546 GT * 10 18/20 GT GC GT GT GT GT GT GA GT GT
148317 TG * 10 18/20 TG TT TG TG TG TG TG TG TG TA
148685 AG * 17 31/34 AG AG AG AG AG AG AG AG AG GA AG AG AG AG AG AG GG
150427 AC * 10 18/20 AC AC AC AC AC AT AC AT AC AC
150588 AG * 11 20/22 AG AC AG TG AG AG AG AG AG AG AG
150611 GA * 10 19/20 GA GA GA GA GA GG GA GA GA GA
151289 AC * 13 25/26 AC AC AC AC AC AC AC AC AC AC GC AC AC
162349 AT * 11 20/22 AT AT AT AT AC AT AT AT GT AT AT
172443 TA * 11 21/22 TA TA TA TA TA TA TA TA TA TA TT
203985 TA * 10 18/20 TA TA TA TA TA TA TA TA AA TT
204912 TA * 16 29/32 TA TA TA TA TA TA TA TA AA TA TA TG TA TA TA CA
206457 CT * 16 30/32 CT CT CT CT CT CT CT CT CT CT CT TT CT CT CT AT
208224 TG * 10 18/20 TG TG TG TG TG TG TG TG GG TT
208521 AG * 10 18/20 AG AG AG AG GG AG AG AG AG AA
210112 CA * 10 18/20 CA CA CA CA CA CG CA CA CA CG
210642 CA * 11 20/22 CA CA CA CA CA CA GA TA CA CA CA
227343 AC * 11 20/22 AC CA AC AC AC AC AC AC AC AC AC
228852 TA * 26 47/52 TA TA TC TA TA TA TA TA TA TA TA CA TA TA TA TA TG TA TA TA TA AA TA TA TA TG
228973 AT * 33 60/66 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT AT AA AT AT AT AT GT TT GT TT
229806 TG * 13 24/26 TG TG TG TG TG TG TG TT TG TG TG TG TT
239384 CA * 11 20/22 CA CA CA CA CA CA CA CA CA TA CG
240053 CA * 10 18/20 CA TG CA CA CA CA CA CA CA CA
240088 CA * 10 18/20 CA CA CA CA CA CA CA CG CT CA
254447 CA * 10 18/20 CA CA CA CT CA CG CA CA CA CA
263914 TA * 10 18/20 TA TA TA TA CA TA CA TA TA TA
265131 CT * 12 22/24 CT CT CT CC CT CT CT CT CT CG CT CT
274358 AT * 10 18/20 AT AC AT AT AT AT GT AT AT AT
285142 CT * 12 22/24 CT CT GG CT CT CT CT CT CT CT CT CT
285198 CT * 10 18/20 CT CT CT TT CT GT CT CT CT CT
289260 TA * 18 33/36 TA TA TA TA TA TG TA TA TA CA TA TA TA TA TA TA TA TC
300814 AT * 13 25/26 AT AT AT AT AT AT AT AT GT AT AT AT AT
301270 AT * 25 45/50 AT TT AT AT AT AA AT AT AT AT AT AT AT AT AT GT AT AT AT AT AT AT AT TT CT
-----------------------------------------------------------------------------------------
Total sequence length......................... 301656
Total number of repeats detected.............. 56
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 10 5 2 1 3 11 5 2 0 3 0 0
15 to 19 2 2 1 0 0 1 2 0 0 2 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 1 1 0 0 0 0 0 1 0 0 0 0
30 to 34 1 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 14 8 3 1 3 12 7 3 0 5 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
14 AT + 8 TA = 22
3 AG + 1 GA + 5 CT + 0 TC = 9
3 GT + 7 TG + 12 CA + 3 AC = 25
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7293536|gb|AE003511.1|AE003511 Drosophila melanogaster genomic scaffold 142000013386053 section 28 of 30, complete sequence
Position Repeat Coverage Repeat
17589 TG * 10 18/20 TG TG TG TT TG TG AG TG TG TG
18291 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TG CA
29976 TG * 15 27/30 TG TG TG AA TG TG TG TG TG TG TG TG TG TG TT
36842 TG * 12 22/24 TG CA TG TG TG TG TG TG TG TG TG TG
40890 TA * 10 18/20 TA AG TA TA TA TA TA TA TA TA
44929 CA * 14 26/28 CA CA CA CA CA CA CA CA CA CA CT CA CC CA
45195 GT * 13 24/26 GT GT GT GT TT GT GT GT GT TT GT GT GT
45718 GT * 17 31/34 GT GT GT GT GT GT GT GT GT GT GT GT GC GA GT GT AT
47200 AC * 11 20/22 AC TC AC AC AC AC AC AC GC AC AC
48827 TG * 16 30/32 TG CG TG TG TG TG TG TT TG TG TG TG TG TG TG TG
49052 TG * 10 18/20 TG CG TG TG TG TG TG TA TG TG
50456 GT * 13 24/26 GT GT GA CT GT GT GT GT GT GT GT GT GT
52153 TG * 20 36/40 TG CG AG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG CA
55971 AC * 10 18/20 AC AC AC TC TC AC AC AC AC AC
56003 AC * 10 18/20 AC TC AC AC AC AC AC AC AC AT
56622 AT * 10 18/20 AT AT AT GT AT AT AT GT AT AT
57063 AC * 11 20/22 AC CA AC AC AC AC AC AC AC AC AC
58291 TG * 11 20/22 TG TG TG TG TG TG TG TG TG GG TC
63386 GA * 17 31/34 GA GA GA GA GA GA GA GA AA GA GA GA CA GA GC GA GA
65176 TG * 13 24/26 TG TC CG TG TG TG TG TG TG TG TG TG TG
66780 CA * 16 29/32 CA CA CA GA CA CA CA CA CA CA CA CA CA CT TA CA
72403 GA * 13 24/26 GA AA GA GA GA GA GA GA GA GA GA GG GA
74436 AC * 17 31/34 AC GA AC AC AC AC AC AC AC AC AC AC AC AC AC AC GC
92350 TC * 17 31/34 TC TC TC TC TC TA TT TC TC TC TC TC TC TC TC TC CC
95655 TA * 11 20/22 TA TA TA TG TA TA TA CA TA TA TA
106736 TG * 15 28/30 TG TG TG TA AG TG TG TG TG TG TG TG TG TG TG
111911 TG * 16 30/32 TG TG TG TG TG TG TG TG TG TG TG TG TG TA TG TC
141886 AT * 13 24/26 AT AT AT AT AT AT AT AT AT GA AT AT AT
154357 CA * 12 22/24 CA CA CA CA CA CA CA CA CA TA CA CG
166140 TC * 13 24/26 TC TT TC TC TC TC TT TC TC TC TC TC TC
169459 AT * 17 32/34 AT AT AT AT AC AT AT AT AT AT AT AT AT AT GT AT AT
205681 GA * 15 27/30 GA GA GC GA CA GA GA GA GA GA GA GA GA GA AA
210136 CT * 18 33/36 CT CT CT CT CT CT CT CT CT CT CT TT CT CT CT GT CT CC
210237 GT * 11 20/22 GT GC GT GT GT GT GC GT GT GT GT
226939 AT * 21 38/42 AT AT AT AT AT TT AT AT AT AT AT AC AT AT AT AT AT AT GT AT AA
227340 TA * 10 19/20 TA TA TA TA TA TA TA TA TA TN
228057 GT * 11 20/22 GT GT GT GT GT GT GT GT GT GA TT
235439 TA * 12 23/24 TA TA TA TA TA TA TA TA TA TA TA GA
243429 TG * 16 30/32 TG CG GG TG TG TG TG TG TG TG TG TG TG TG TG TG
244155 TG * 31 56/62 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TC GG TG TT GC AG
253221 TA * 12 22/24 TA TA TA TA TA TA CA TA TA AA TA TA
258884 AT * 10 19/20 AT GT AT AT AT AT AT AT AT AT
266304 TA * 10 19/20 TA TA TA TA TA TA TA TA TA GA
266918 AG * 11 20/22 AG AG AG AG AG AG AG AG AG AA AT
268610 AG * 14 26/28 AG AC AG AG AG AG AG AG AG AG AC AG AG AG
277904 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AG AG
284513 TA * 10 18/20 TA TA TA TA TA TA TA TA TA AC
293473 AT * 15 27/30 AT TT AT AT AT AC AT AT AT AT AT AT AT AT GT
299303 GT * 10 18/20 GT GT GT GA GA GT GT GT GT GT
300574 GT * 15 28/30 GT GC GT GT GT GT GT GT GT GT GT GT GT GA GT
307890 AC * 12 22/24 AC AC AC AC AC AC AC AC AC GC AA AC
309184 AT * 10 18/20 AT AT AT AT AT GT AT AT GT AT
321157 TA * 13 24/26 TA TA TA TA TA TA TA TG TA CA TA TA TA
321278 TG * 13 24/26 TG TG TG CG TG CG TG TG TG TG TG TG TG
332586 GT * 11 20/22 GT GC GT GT GT GT GT GT GT GT TT
336122 TA * 16 30/32 TA TA TA TA TA TA TA TA TA TG TA TA TG TA TA TA
336341 AG * 10 18/20 AG AG TG AG AG AG AG AG AG GG
339562 CT * 10 18/20 CT CT CT CC CT CT CT CT CT GT
339584 AG * 11 20/22 AG AG AG AG AG AG CG AG AG CG AG
339821 GT * 11 20/22 GT GT GT GT GT GT GT GT GT TT TT
342768 AG * 12 22/24 AG AG AG CG AG CG AG AG AG AG AG AG
-----------------------------------------------------------------------------------------
Total sequence length......................... 343711
Total number of repeats detected.............. 61
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 5 8 5 1 5 2 7 7 1 1 0 0
15 to 19 2 1 0 2 1 1 5 2 1 1 0 0
20 to 24 1 0 0 0 0 0 1 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 1 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 8 9 5 3 6 3 14 9 2 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
8 AT + 9 TA = 17
5 AG + 3 GA + 2 CT + 2 TC = 12
9 GT + 14 TG + 3 CA + 6 AC = 32
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7293504|gb|AE003510.1|AE003510 Drosophila melanogaster genomic scaffold 142000013386053 section 27 of 30, complete sequence
Position Repeat Coverage Repeat
2138 CA * 17 31/34 CA CA CA CA CA CA CA CA CA CA CA CA CA CT CA CA TG
58110 CA * 10 19/20 CA CA CA CA CA CA CA CA AA CA
58268 AC * 17 31/34 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC GG GC
61401 AT * 10 18/20 AT AT GC AT AT AT AT AT AT AT
70727 AT * 13 24/26 AT AT AT AT AT GT AT AT AT GT AT AT AT
105760 AT * 10 18/20 AT AT AC AT AT AT AT AT AT AA
113141 AT * 10 18/20 AT AT AT AT GT AT AT AT GT AT
123233 GT * 11 20/22 GT GG GT GT GT GT GT GT GC GT GT
123572 TA * 10 18/20 TA TA TA TA TA TA TA TA TT TT
124031 CA * 18 33/36 CA CA CA TG CA CA CA CA CA CA CA CA CA CA CA CA CA CT
126659 AT * 13 24/26 AT AC AT AT AT AA AT AT AT AT AT AT AT
150355 AT * 10 18/20 AT AT AT AT AT GT AT AT AT GT
151951 TG * 10 18/20 TG CG TG TG TG TG TG TG TT TG
153082 AT * 10 18/20 AT AT AT AT AT AT AT AT AA AC
157017 AT * 16 29/32 AT AT AT AT GT AT GT AT AT AT AT AT AT AT AC AT
168085 GA * 10 18/20 GA GA GA GA GA GA GA GG GC GA
182768 AT * 15 27/30 AT AT AT AT AT AA AT AT AT AT AT AT AT AT TA
184948 AC * 11 20/22 AC GC AC AA AC AC AC AC AC AC AC
186433 AC * 11 20/22 AC AC AC AC AC AC AC CC AC AA AC
190570 CT * 10 18/20 CT CT CT CG CT CT CT CT CT TT
192553 AT * 12 22/24 AT AC AT AC AT AT AT AT AT AT AT AT
195076 GT * 11 20/22 GT AT CT GT GT GT GT GT GT GT GT
196790 AT * 10 18/20 AT AT AT AC AT AT AT AT AT GT
200519 AT * 10 18/20 AT AT AT AA AT AC AT AT AT AT
211658 CA * 15 28/30 CA CA CC GA CA CA CA CA CA CA CA CA CA CA CA
219681 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA AA CA CT
221706 TA * 10 18/20 TA TA TA TA CA TA TT TA TA TA
222302 GT * 10 19/20 GT GT GC GT GT GT GT GT GT GT
226837 CA * 17 31/34 CA CA CA CA CA CA CA CA CA CA CA CA CG GA CA AA CA
227787 TG * 11 20/22 TG CC TG TG TG TG TG TG TG TG TG
229746 CA * 11 20/22 CA TA CA CA CA CG CA CA CA CA CA
232161 AT * 10 18/20 AT AT AT AT AT AC AT AT GT AT
243753 CA * 12 22/24 CA CA CA CA CA CA CA AA CA CA CC CA
244844 AT * 11 20/22 AT AT AT AT AT AT AT AT AT TT TT
250264 CA * 11 20/22 CA CA CG CA CA CA CA CA CA CA CG
253438 TA * 10 18/20 TA TA TA TA TC TG TA TA TA TA
257249 AT * 12 22/24 AT AT AT AT AC AT AT AT AC AT AT AT
264680 GT * 15 27/30 GT GT GT GT GT GT GT GT GT GT GT GC GT TT GG
269898 AT * 13 24/26 AT AT AT AT AA AG AT AT AT AT AT AT AT
274317 AC * 10 18/20 AC AC AC AC AC AC AC GC AC GC
275122 TG * 13 24/26 TG TG TG TG TG TG TC TG TG TG TG CG TG
281016 GT * 11 20/22 GT GG GT GT GT GA GT GT GT GT GT
281251 GT * 13 24/26 GT GA GT GA GT GT GT GT GT GT GT GT GT
289679 GT * 11 20/22 GT GT GT GG GA GT GT GT GT GT GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 298477
Total number of repeats detected.............. 44
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 14 3 0 1 3 5 3 6 0 1 0 0
15 to 19 2 0 0 0 1 4 0 1 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 16 3 0 1 4 9 3 7 0 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
16 AT + 3 TA = 19
0 AG + 1 GA + 1 CT + 0 TC = 2
7 GT + 3 TG + 9 CA + 4 AC = 23
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7293467|gb|AE003509.1|AE003509 Drosophila melanogaster genomic scaffold 142000013386053 section 26 of 30, complete sequence
Position Repeat Coverage Repeat
4389 TG * 12 22/24 TG TG TG CG TG TG TG TG TG TG TG TC
5289 AT * 12 22/24 AT AT AA AT AT GT AT AT AT AT AT AT
13118 AG * 13 25/26 AG AG AG AG CG AG AG AG AG AG AG AG AG
17942 AT * 14 26/28 AT AT AC AT AT GT AT AT AT AT AT AT AT AT
24366 AC * 21 38/42 AC AC AC AC AC AC AC AC AC AC AC AC GC AC AC AC CC AC AC AA AG
61858 GT * 10 18/20 GT GT GC GT GT GT GT TT GT GT
64282 TG * 10 18/20 TG TG TG TG TG TG TG TG TG GT
79945 TG * 16 29/32 TG TG TG TG TG TG TG TG TG TG TG TG TG TC TC TT
82815 AC * 15 27/30 AC AC AC AC AC AC AC AC AC AC AT AC AC AT AT
86173 TC * 12 22/24 TC TC TC TC TT TC TC TC TC TC TC TG
89062 CA * 10 19/20 CA CA CA CA CA CA CA GA CA CA
89922 TG * 16 29/32 TG TG TG TG CG TC TG TG TG TG TG TG TG TG TT TG
92611 CA * 10 18/20 CA CA CA CA CA CA CA CC CA CT
100074 AG * 12 22/24 AG AG AA AG AG CG AG AG AG AG AG AG
102000 CA * 15 28/30 CA CA CA CA CA CA CA CA CA CA CA CA CG CA CC
102180 CA * 11 20/22 CA TA CA AA CA CA CA CA CA CA CA
107708 AT * 13 24/26 AT AT GT AC AT AT AT AT AT AT AT AT AT
109798 CA * 17 32/34 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CT CT
133183 TA * 10 18/20 TA TA TA TA TA TA TA TT TA TC
134541 TC * 12 22/24 TC TC TC TC TC TT TC TC TC AC TC TC
138847 TG * 10 18/20 TG TG TG TG TG TG TG TG TG GT
148413 CA * 13 24/26 CA CA TA CA CA CA CA CG CA CA CA CA CA
151591 CA * 10 18/20 CA CG CA CA CA CA CA CA CA CC
160585 AC * 13 24/26 AC AC CT AC AC AC AC AC AC AC AC AC AC
165406 AT * 10 18/20 AT AT AT CT AT AT AT AC AT AT
174409 GT * 17 31/34 GT GT GT GT GT GT GT GT GT GT GT GT GT AT TG GT GT
190610 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG AA
191245 GT * 10 18/20 GT AT GT GT GT GT GG GT GT GT
219015 AC * 16 29/32 AC AC AC AC AC AC AC AT AC AC AC AC AC AA AC AG
223556 TG * 10 19/20 TG TG TG TG CG TG TG TG TG TG
230609 AC * 10 19/20 AC AC AC AC AC AC AC TC AC AC
238405 AT * 11 20/22 AT AC AT AC AT AT AT AT AT AT AT
267590 TG * 12 22/24 TG GA TG TG TG TG TG TG TG TG TG TG
268770 TA * 10 18/20 TA TG TA TG TA TA TA TA TA TA
271605 GT * 12 22/24 GT GC GT GT GT GT GC GT GT GT GT GT
277809 CT * 20 36/40 CT CT CT CT CT CT CT CT CT CC CT CT CT CA CT CT CT CC CT GT
281804 CA * 17 32/34 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA AG
288547 GA * 16 29/32 GA GA GC GA GA CA GA GA GA GA GA GA GA GA GA GT
290055 AT * 11 20/22 AT AT GC AT AT AT AT AT AT AT AT
301573 TA * 13 24/26 TA TA TA TA TA TA TA TA TG CA TA TA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 303819
Total number of repeats detected.............. 40
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 6 3 2 0 2 5 6 3 2 0 0 0
15 to 19 0 0 0 1 2 3 2 1 0 0 0 0
20 to 24 0 0 0 0 1 0 0 0 0 1 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 6 3 2 1 5 8 8 4 2 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
6 AT + 3 TA = 9
2 AG + 1 GA + 1 CT + 2 TC = 6
4 GT + 8 TG + 8 CA + 5 AC = 25
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7293431|gb|AE003508.1|AE003508 Drosophila melanogaster genomic scaffold 142000013386053 section 25 of 30, complete sequence
Position Repeat Coverage Repeat
516 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AC CA
3511 CA * 15 27/30 CA CA CA CC CA CG CA CA CA CA CA CA CA CA CC
6796 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC AC GC AG
8092 CA * 12 22/24 CA CC TA CA CA CA CA CA CA CA CA CA
8496 AT * 10 18/20 AT CT AT AT AC AT AT AT AT AT
8574 AT * 12 22/24 AT AT AT AT AT AT AT AT AT AG AT TT
11253 TG * 18 33/36 TG TG TG TG TG TG TG TA TG TG TG TG TG TG TG TG TG CA
15415 AT * 15 27/30 AT AT AT AT CT AA AT AT AT AT AT AT AT AT AA
15592 GT * 18 34/36 GT GT GT GT GT GT GT GC GT TT GT GT GT GT GT GT GT GT
17077 TG * 10 18/20 TG CG CG TG TG TG TG TG TG TG
17117 TG * 12 22/24 TG CG TG GG TG TG TG TG TG TG TG TG
18729 TA * 10 19/20 TA TA TA TA TA TA TA TA TA TC
19462 TC * 11 20/22 TC TC TC TC TC TC TC TC TT TC TA
19498 TC * 12 22/24 TC TT TC CC TC TC TC TC TC TC TC TC
19866 AT * 10 18/20 AT AT AT AT AT AT AT AT AC AC
19944 AT * 14 26/28 AT AT AT AT AT AT AG AT AT AT AT AT AT AC
20239 CA * 12 22/24 CA CC CA AA CA CA CA CA CA CA CA CA
20486 CA * 11 20/22 CA AA CA CA CA CA CA CA CA CA TA
20516 TA * 16 29/32 TA TG TA TA TA TA AA TA TA TA TA TA TA TA TA TG
20708 AC * 10 18/20 AC AC AC AC AC AC AC AT AC GC
21098 AC * 11 20/22 AC AC AC CC TC AC AC AC AC AC AC
21625 AT * 10 18/20 AT AT AT AT AT AT AT AT AT GG
24964 AT * 10 18/20 AT GT AT AT AT AT AT AT AT AC
27522 AC * 10 19/20 AC AC AC AC AC AC AC AC AC AT
27949 CA * 10 19/20 CA CA CA CA CC CA CA CA CA CA
29066 TG * 11 20/22 TG TA TG TG TG TG TG TG TG TG CG
32988 CA * 14 26/28 CA CA CA CA CG CA CA CA CA CA CA CA CA GA
34473 CA * 25 45/50 CA CA CG TA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA TG CA CA TA
34746 CA * 10 18/20 CA CA CA CA CA CC CA CA CA GA
35596 GT * 12 23/24 GT GT GT GT GT GT GT GT GT GT TT GT
44991 GT * 10 18/20 GT AT GT GT GT GT GT GT AT GT
47436 CT * 10 18/20 CT CC CT TT CT CT CT CT CT CT
48573 TA * 10 18/20 TA TA TA TA TA TA TA AA TA TC
49490 CA * 15 27/30 CA CA CA AA CA CA CA CA CA CA CA CA CG CA GA
51315 TA * 12 22/24 TA TA TA TA TA TA TA TA TG TA TA GA
51348 AT * 21 38/42 AT AT AT AT AT GT AT AT AT AT AT AT AT AT AA AT AT AT AT AC AC
56153 AC * 12 22/24 AC AC AG AC AC GC AC AC AC AC AC AC
58382 AG * 10 18/20 AG AA AG AG AG AG AG AG AG AA
60091 CT * 11 20/22 CT CT TT CT CT CT CT CT CT CG CT
63202 TC * 12 23/24 TC TC TC TC TC TC TC TC TC TC TC TT
72918 CA * 20 36/40 CA CT CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA AT TA
73413 GT * 11 20/22 GT GA CT GT GT GT GT GT GT GT GT
75236 GT * 12 22/24 GT GT GC CT GT GT GT GT GT GT GT GT
75845 TG * 11 20/22 TG TG TG TG TG TG TG TG CA TG TG
75881 GT * 10 18/20 GT GT GT GT GT GT GT GA GG GT
83089 CA * 14 26/28 CA CA CA CA CA CA CA CA CA CA CA CA CA AC
88372 AT * 10 18/20 AT AT AT AT AT GT AC AT AT AT
94913 TG * 13 25/26 TG TC TG TG TG TG TG TG TG TG TG TG TG
136781 GA * 11 20/22 GA GA GT GC GA GA GA GA GA GA GA
138830 AG * 16 29/32 AG AG AG GG AG AG AG AG AG AG AG AG AG AG AG CA
146167 GT * 13 24/26 GT GT GC GT TT GT GT GT GT GT GT GT GT
153829 TC * 13 24/26 TC TC TC TC TC TA TT TC TC TC TC TC TC
157748 CT * 11 20/22 CT CT CT CT CT CT CC CT CT CT CA
164002 AC * 10 18/20 AC GC AC AC AC AC AC AT AC AC
172781 TC * 16 29/32 TC TC TC TA TC TC TA TC TC TC TC TC TC TC TA TC
173759 AT * 10 18/20 AT AT AT AC AT AT AT AT AT GT
182683 TG * 21 38/42 TG TG TG CG TG TG TG TG TG TG TG TG TG TG TG TG TG TG CC TG TT
183342 TG * 15 28/30 TG AG TG TG TG TG TG TG TG TG TG TG TG TG TC
185540 AT * 11 20/22 AT AT AT CT AT AT AT AT AT AT TT
188473 AT * 11 20/22 AT AT AT AT GT AT AT AC AT AT AT
189324 CA * 17 32/34 CA CA CA CA CA CA CA CA CA CA CA CA CA TG CA CA CA
192297 AT * 10 18/20 AT TT AT AT AT AT AT AT AT TT
192836 TG * 17 32/34 TG TG TA TG TG TG TG AG TG TG TG TG TG TG TG TG TG
194087 AT * 11 20/22 AT AT AT AT AT AT AT AT AG CT AT
195318 GT * 16 29/32 GT AT GC GT GT GT GT GT GT GT GT GT GT GT GT GC
195525 GT * 13 24/26 GT GT GT GT GT GA GT GT GC GT GT GT GT
195884 TG * 13 24/26 TG TG TG TG CG TG TG TG TG TG TG TG CG
196294 TG * 10 18/20 TG TG TG TG TG TG TG TG AG CG
196326 TG * 11 20/22 TG TG TG TG CG TG TG TG TG TG TC
203765 GT * 14 26/28 GT GT AT GT GT GT GT GT GT GT GT GT GT GC
214754 GT * 10 18/20 GT GT GT GT GT GT GA GC GT GT
219136 GA * 11 20/22 GA GA GA GA GA GA GC GA GA GA GT
219435 GA * 11 20/22 GA GT GA GA GA GA GA GA GA GT GA
222469 AC * 10 18/20 AC TC AC AC AC AC AC TC AC AC
222588 TC * 10 18/20 TC TC TA TC TC TC TC TC TA TC
241444 TG * 11 20/22 TG TG TG TG TG AG TG TG TA TG TG
245823 CA * 20 36/40 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA AA CA CA CT TC
252536 CT * 10 18/20 CT CT CC CT CT TT CT CT CT CT
256728 TG * 12 22/24 TG TG TG TG CG TG TG TG TG TG TG GG
262106 TG * 11 21/22 TG AG TG TG TG TG TG TG TG TG TG
262756 AT * 10 18/20 AT AT AT AT AC AT GT AT AT AT
266035 TA * 10 18/20 TA TA TA TA TG TA CA TA TA TA
291169 TG * 16 30/32 TG TG TG TG CG TG TG TG TG TG TG TG TG TT TG TG
291515 AT * 12 22/24 AT AT AT AT AT AT AT AT AT AT AT GC
291612 AT * 11 20/22 AT AT AT AT AT AT AT AT AT GT AC
299195 CA * 17 32/34 CA CA CA CA CA CA CA CA CA CA CA CA CC CA CA TA CA
300057 AC * 11 20/22 AC AC AC AC AC AC AC AC AG AC TC
-----------------------------------------------------------------------------------------
Total sequence length......................... 300919
Total number of repeats detected.............. 87
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 15 4 1 3 9 7 11 9 5 4 0 0
15 to 19 1 1 1 0 0 4 4 2 1 0 0 0
20 to 24 1 0 0 0 0 2 1 0 0 0 0 0
25 to 29 0 0 0 0 0 1 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 17 5 2 3 9 14 16 11 6 4 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
17 AT + 5 TA = 22
2 AG + 3 GA + 4 CT + 6 TC = 15
11 GT + 16 TG + 14 CA + 9 AC = 50
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7293394|gb|AE003507.1|AE003507 Drosophila melanogaster genomic scaffold 142000013386053 section 24 of 30, complete sequence
Position Repeat Coverage Repeat
5317 TG * 10 18/20 TG TG TG TG TG TG CG TT TG TG
16754 CA * 10 18/20 CA CA CA CA CA CA CA CA TA AA
27107 AC * 11 20/22 AC AT AC AT AC AC AC AC AC AC AC
28878 TG * 10 18/20 TG TG TA TG TG TG TG TG TG TT
30096 AC * 17 32/34 AC AC AC AA AC AC GC AC AC AC AC AC AC AC AC AC AC
35220 CA * 13 24/26 CA CA CA CA CA CT CA CA CA CA CA CG CA
35250 GA * 10 18/20 GA GA GA GA GA GA GT GA GA AA
42637 CT * 11 20/22 CT CT CT CT CT CT CT CC GT CT CT
42700 TA * 13 24/26 TA CA TA TA TA TA CA TA TA TA TA TA TA
61768 AT * 10 18/20 AT AT AT AC AC AT AT AT AT AT
64520 TA * 11 21/22 TA TA TA TA TA TA TA TA TT TA TA
69821 TG * 13 24/26 TG TG TA GG TG TG TG TG TG TG TG TG TG
70351 AT * 12 22/24 AT AT AT AT AC AT GT AT AT AT AT AT
70375 TA * 13 24/26 TA TA TA CA TA TA TA TA TA TA CA TA TA
72120 TG * 12 22/24 TG TG TG TC TG TG TT TG TG TG TG TG
72546 AT * 11 21/22 AT AT TT AT AT AT AT AT AT AT AT
73995 AT * 10 18/20 AT AT AT AT TT AT TT AT AT AT
77304 CA * 10 18/20 CA CA CA CA CA CA CT GA CA CA
78810 AT * 10 18/20 AT AT AT AT AT AT AT AT AG AG
83442 TG * 10 18/20 TG TG TC TG TG TG TG TG TG TT
83474 GT * 11 21/22 GT GT GT GT GT GT GT GT GT GT GG
84680 TG * 11 20/22 TG CG TG TG TG TG TG TG TG TC TG
86664 TG * 13 24/26 TG CG TG TG TG TG TG TG TG TG TG TG TA
87978 AT * 10 18/20 AT AT AT AT GT AT AT AT AT TT
89528 GT * 12 22/24 GT GT CT GT GT GT GT GT GT GT GT GG
91912 AG * 11 20/22 AG AC AG AG AG AT AG AG AG AG AG
92678 GA * 16 29/32 GA GA GA AA GA AA GA GA GA GA GA GA GA GA GA GT
92720 GT * 16 29/32 GT GT GT GT GT GT GT GT GT GA GA GT GT GT GT AT
95526 AT * 11 20/22 AT AT AT AT AT AT AT AT TT AT AA
96270 AG * 11 20/22 AG AG AG AG AA AG AG AG AG GG AG
101676 AC * 16 30/32 AC CT AC AC AC AC AC AC AC AC AC AC AC AC AC AC
105290 CA * 13 24/26 CA CA CC CA CA CT CA CA CA CA CA CA CA
107751 AC * 10 18/20 AC GC AC AC AC AC AC AC AC AT
108767 AC * 10 18/20 AC GC AC AC AC AT AC AC AC AC
108789 AC * 10 18/20 AC AC AC AC AC AC AC AC TT AC
108899 GA * 10 18/20 GA GA GA GA GA GA GA GA GG GC
109308 AT * 17 31/34 AT AT AT AT AT AT AT AT AT AC AT AG AT AT AT AT GT
109550 AG * 10 18/20 AG AG CA AG AG AG AG AG AG AG
111381 TG * 10 18/20 TG TG TG AG TA TG TG TG TG TG
111459 AC * 18 34/36 AC AA GC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
111664 TC * 12 22/24 TC TC TC CC CC TC TC TC TC TC TC TC
111871 TA * 10 18/20 TA TA TA TA TT TA TT TA TA TA
114190 AT * 10 18/20 AT AT AT AT GT AT AT AT GT AT
117258 CA * 13 24/26 CA CA CG CA CA CA CA CA CA CA CA CT CA
119284 CA * 11 20/22 CA CA CA CA CA CA CA CA GA CA TA
119334 AT * 13 24/26 AT AT AT GG AT AT AT AT AT AT AT AT AT
119756 CA * 14 26/28 CA CA CT CA CA CA CA CA CA CA CG CA CA CA
125242 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT TG GT
126043 TA * 11 20/22 TA TA TA TA TA TA TG TA TA TA GA
127606 TA * 17 31/34 TA TA TA TA TA CA TA TA TA TA TA TG TA TA TA TG TA
128297 CA * 11 20/22 CA CA CA CA CA CA CA CA CA GG CA
130207 CT * 11 20/22 CT CT CT CT CT CT CT CT TT TT CT
133112 TA * 11 20/22 TA CA TA CA TA TA TA TA TA TA TA
133580 CA * 12 22/24 CA CA CA CA CA CG CA CA CA GA CA CA
140559 CA * 20 36/40 CA AC CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA GT
140743 AC * 11 21/22 AC AC AC TC AC AC AC AC AC AC AC
141193 AG * 12 22/24 AG AG TG AG AA AG AG AG AG AG AG AG
142797 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AA GC
143014 TG * 10 18/20 TG TG TG TG TG TG TG TG TA TA
143172 CA * 12 23/24 CA CG CA CA CA CA CA CA CA CA CA CA
143634 TG * 11 20/22 TG TA CG TG TG TG TG TG TG TG TG
144057 TA * 12 22/24 TA TA TA AA AA TA TA TA TA TA TA TA
145772 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CA GC
147645 CA * 10 18/20 CA CA TC CA CA CA CA CA CA CA
149108 AC * 11 20/22 AC AC CC AC AC AC AC AC AC TC AC
149345 AC * 10 18/20 AC AC AC AT AC AC AC AC AC GC
150159 AC * 11 20/22 AC AA AC AC AC AC AC AC AC AC AT
154020 CA * 17 31/34 CA CA CA CT CG CA CA CA CA CA CA CA CA CA CA CA CT
154085 AG * 12 23/24 AG AG AG AG AG AG AG AA AG AG AG AG
154284 AT * 11 20/22 AT AT AC AT AA AT AT AT AT AT AT
154438 AC * 10 19/20 AC AC AC AC AC AC AC AC AC GC
155186 TG * 10 18/20 TG TG TG TG TG GG TA TG TG TG
169419 CT * 12 22/24 CT CT CT CT CT CT CT CT CT CT CC CG
169477 CT * 10 18/20 CT CT TT CT CT CT CT CT CT TT
178309 CA * 10 19/20 CA CA CA TA CA CA CA CA CA CA
181422 AG * 10 18/20 AG AG AA AG AG AC AG AG AG AG
186365 CA * 10 18/20 CA CC CA TA CA CA CA CA CA CA
186418 AC * 10 18/20 AC AC AC AC AC AT AC AC AC AA
194686 AG * 10 18/20 AG GG AG AG AG AG AG AG AG AA
196392 AC * 10 18/20 AC AC AC AC AA AC AC AC AC GC
199352 AT * 11 20/22 AT AT AT AC AT AT AT AC AT AT AT
199863 TG * 11 20/22 TG CG TG TG TG TG TG TG TG TG TT
200055 TG * 16 29/32 TG TC TG TG CG TG TG TG TG TG TG TG TG TG TC TG
201975 GA * 21 38/42 GA GA AA GA GA GA GA GA GA GA GA GA GA GA GC GA GC GA GA GG GA
216147 AT * 10 18/20 AT AT AT AT AT AT AT AG AT GT
224029 TG * 12 22/24 TG TG TG TG TA TG TG GG TG TG TG TG
224429 CA * 15 27/30 CA CA CT CA CA CA CA CA CA CA CA CA CG CA GA
237415 AT * 10 18/20 AT AT AT AC AT AT AT AT AT AG
245243 AT * 10 18/20 AT AT AT AT AT AT AT AT TT TT
253571 AG * 17 31/34 AG AG AG AG AG AT AG AG AG AG AG AG AG AC AG AG TG
257553 TG * 13 24/26 TG TG CG TG TG TG TG TG TG TG TG AG TG
260846 TG * 11 21/22 TG TG TG TG CG TG TG TG TG TG TG
261228 AT * 16 29/32 AT AT AA AT AT AA AT AT AT AT AT AT AT AT GT AT
261711 GA * 10 18/20 GA GA GC GA GA GA GA GC GA GA
263080 AT * 12 22/24 AT GT CT AT AT AT AT AT AT AT AT AT
264136 TA * 14 26/28 TA TA TA AA TA TA TA TA TG TA TA TA TA TA
266565 TA * 12 22/24 TA TA TA TA TA TA TA TA TA TA TA NN
266601 AT * 12 23/24 AT AT AT AT AT AT AT AT AT AT AT AG
275487 TG * 17 31/34 TG TG TG TG TG TG TG TG TG TG TG TG TT TG TG GG CG
276999 TG * 18 33/36 TG TG TG TG TG TG TG TG TG TG TG TG GG AG TG TG TG AG
277124 AT * 10 19/20 AT AT AT AT AT TT AT AT AT AT
277341 GT * 18 34/36 GT GC GT GA GT GT GT GT GT GT GT GT GT GT GT GT GT GT
284233 AT * 10 18/20 AT AT AT AT AT AT AC AT AC AT
285292 TG * 13 24/26 TG TG GG TG TG TG TG TG TG TG TG TG GG
288774 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA GA GA
289144 AT * 10 18/20 AT AT AT AT AT AT AT AT TC AT
292099 AC * 11 20/22 AC AC AC AC AC AA AT AC AC AC AC
294964 CA * 12 22/24 CA CA CA CA CA TA CA CA CA CA CA CT
295940 AT * 10 18/20 AT AC AT AT AT AT AT AT AT TT
-----------------------------------------------------------------------------------------
Total sequence length......................... 297165
Total number of repeats detected.............. 109
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 20 9 7 3 13 16 16 3 1 4 0 0
15 to 19 2 1 1 1 3 2 3 2 0 0 0 0
20 to 24 0 0 0 1 0 1 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 22 10 8 5 16 19 19 5 1 4 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
22 AT + 10 TA = 32
8 AG + 5 GA + 4 CT + 1 TC = 18
5 GT + 19 TG + 19 CA + 16 AC = 59
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7293355|gb|AE003506.1|AE003506 Drosophila melanogaster genomic scaffold 142000013386053 section 23 of 30, complete sequence
Position Repeat Coverage Repeat
10294 CA * 10 18/20 CA CA CA CA CG CA CA CA CA AA
26523 AT * 10 18/20 AT AT AT AT AT AT GT AA AT AT
29669 TG * 11 20/22 TG TG TA CG TG TG TG TG TG TG TG
34311 AC * 10 18/20 AC AC GC AC TC AC AC AC AC AC
39141 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TG CA
42668 AT * 13 25/26 AT AT AT AT AT AT GT AT AT AT AT AT AT
54646 AT * 10 18/20 AT CT AT AT AT AA AT AT AT AT
55728 AG * 13 24/26 AG AG AG AA AG AA AG AG AG AG AG AG AG
63617 AT * 15 27/30 AT AT AT AC AT AT AT AT AT AT GT AT AT AT AC
64907 TG * 11 20/22 TG TG GG AG TG TG TG TG TG TG TG
72831 AT * 10 18/20 AT AC AT AT AT AT AA AT AT AT
74887 TA * 11 20/22 TA TG TA TA TA TG TA TA TA TA TA
74941 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG CG AG
85279 TA * 11 20/22 TA TA AA TA TA TA TA TA TT TA TA
89300 AC * 19 35/38 AC AC AC AC AC AC AC AC AC AT AC AC AC AC AC AC AC AG AA
89839 TA * 11 20/22 TA TT TA AA TA TA TA TA TA TA TA
100149 GA * 10 18/20 GA GA GA GC GA GA GC GA GA GA
101404 CA * 10 18/20 CA CT CA CA CA CA CG CA CA CA
107353 AT * 11 20/22 AT AT AT AT AT AT AT AT AC AT GT
131788 CA * 13 24/26 CA CA AA CA CA CA CA CA CA CA CA CA AA
140579 AC * 11 20/22 AC TA AC AC AC AC AC AC AC AC AC
147440 CA * 10 18/20 CA CT CA CA CA CA CA CA CA AA
148935 GA * 10 18/20 GA GG GA GA GA GA GC GA GA GA
151293 TG * 10 18/20 TG TG CG TG TG TG TG TC TG TG
156017 AT * 10 18/20 AT GT AT AT AT AT AT AT AT AC
162037 AC * 11 20/22 AC AG CC AC AC AC AC AC AC AC AC
162272 GT * 10 18/20 GT GT GT GC TT GT GT GT GT GT
165701 AT * 10 18/20 AT AC AT AC AT AT AT AT AT AT
169809 AC * 10 18/20 AC TA AC AC AC AC AC AC AC AC
175563 TA * 11 20/22 TA CA TA CA TA TA TA TA TA TA TA
176605 AT * 10 18/20 AT AT AT AT AT AT AT AT AT GC
182969 CT * 10 18/20 CT CT CT GT CT CT CT AT CT CT
187822 TG * 10 18/20 TG CG TT TG TG TG TG TG TG TG
191073 AT * 10 18/20 AT AT AT AT AT GT AT AT GT AT
193787 TA * 10 18/20 TA TA TA TA TA TA TA TA TT AA
235374 AC * 11 20/22 AC AC AC AC AC GC AC AC AC AC AG
238726 CA * 10 18/20 CA CA CA CA CA CA CG CA CA CT
240779 AC * 20 37/40 AC AC AC AC AC GC AC AC AC AC AC AC GC AC AC AC AC AC AC AT
248754 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TA TC
249539 TA * 11 20/22 TA TA TA TA TA TA TG TA TA TG TA
251500 AC * 11 21/22 AC AC GC AC AC AC AC AC AC AC AC
253213 AC * 11 20/22 AC AC AC AC AC AT AC AC AC AC AA
254049 GT * 18 33/36 GT GT GT GT GT GT GT GC GT GT GT GT GT GT AT GT GT GA
259082 AC * 14 26/28 AC AC AC AC AC AC AC AC AC GC AC AC AC AT
261553 CT * 18 33/36 CT CT CT CT CT CT CT CT CT CT CT CT TT CT CG CT CG CT
261591 CT * 15 27/30 CT CG CT CT CT CT CT CT CT CT CT CT CT CT TA
261963 CA * 10 19/20 CA GA CA CA CA CA CA CA CA CA
276264 AC * 12 22/24 AC GC AC AC AC AC AC AC AC AC AC TC
276383 CA * 11 20/22 CA CA CA CA CA CA CG CA CA TA CA
283371 TC * 13 24/26 TC TC TC TC AG TC TC TC TC TC TC TC TC
-----------------------------------------------------------------------------------------
Total sequence length......................... 300994
Total number of repeats detected.............. 50
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 9 6 1 2 9 7 7 1 1 1 0 0
15 to 19 1 0 0 0 1 0 0 1 0 2 0 0
20 to 24 0 0 0 0 1 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 10 6 1 2 11 7 7 2 1 3 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
10 AT + 6 TA = 16
1 AG + 2 GA + 3 CT + 1 TC = 7
2 GT + 7 TG + 7 CA + 11 AC = 27
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7293335|gb|AE003505.1|AE003505 Drosophila melanogaster genomic scaffold 142000013386053 section 22 of 30, complete sequence
Position Repeat Coverage Repeat
49666 TA * 12 22/24 TA TA TA AA TA TA TA TG TA TA TA TA
69611 AC * 16 29/32 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AT TG
74812 GT * 11 20/22 GT GT GT GT GT GT GT GT GT GT AC
106536 CA * 10 18/20 CA CA CA CA CA CA CA CA CA AC
109590 TC * 11 20/22 TC TC TC AC TC TC TC TC TC TC TA
121480 TC * 12 23/24 TC TC TC TC TC TC TC TC TC TC TC TG
128371 TA * 13 24/26 TA TA TA GG TA TA TA TA TA TA TA TA TA
138448 CA * 16 29/32 CA CA CA CA CA CA CA CA CA CA CA CA CA CA GG AA
146886 CT * 10 18/20 CT CT CT CT CT CT CT CT CA TT
147709 CA * 13 24/26 CA CA CA CA CA CA CA CA CT GA CA CA CA
155289 GT * 11 21/22 GT GT GT GT GT GT GT GT GT GT GC
178641 TG * 10 19/20 TG CG TG TG TG TG TG TG TG TG
194752 AC * 13 24/26 AC AC TC AC AC AC AC AC GC AC AC AC AC
207596 CA * 10 19/20 CA CA CA CA CA CA CA CA CA CG
219794 GT * 12 23/24 GT AT GT GT GT GT GT GT GT GT GT GT
235334 TG * 13 25/26 TG TG TG TA TG TG TG TG TG TG TG TG TG
241033 AT * 13 24/26 AT CT AT AC AT AT AT AT AT AT AT AT AT
247763 AT * 11 20/22 AT AT AT AT AT GT AT AT AT AT AG
247960 GA * 13 24/26 GA AA GA GA GA GA GA GA GA GA GA GA GC
263017 GT * 13 24/26 GT GA GT GA GT GT GT GT GT GT GT GT GT
265343 AC * 19 35/38 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC CC AG AT
266099 AT * 15 27/30 AT TT AT AT GT AT AT AT AT AT AT AT AT AT TT
282572 TA * 10 18/20 TA GA TA TA TA TA TA TA TG TA
284944 AC * 11 20/22 AC AG AC AC AC AC AC AC AC AT AC
299204 CT * 25 45/50 CT CT TT CG CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT GT TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 314113
Total number of repeats detected.............. 25
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 2 3 0 1 2 3 2 4 2 1 0 0
15 to 19 1 0 0 0 2 1 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 1 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 3 3 0 1 4 4 2 4 2 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
3 AT + 3 TA = 6
0 AG + 1 GA + 2 CT + 2 TC = 5
4 GT + 2 TG + 4 CA + 4 AC = 14
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7293302|gb|AE003504.1|AE003504 Drosophila melanogaster genomic scaffold 142000013386053 section 21 of 30, complete sequence
Position Repeat Coverage Repeat
6619 TC * 11 20/22 TC CC TC TC TC TC TC TC TC TT TC
19165 TA * 12 22/24 TA TA TA TA TA TA TA TA TA CA TA TG
41631 GT * 11 20/22 GT AT GT TT GT GT GT GT GT GT GT
46502 TG * 17 31/34 TG TG TG TG TG TG TG TG TG TG TG TG CG TG TG CG TC
47253 TG * 14 26/28 TG TG TG TG TG TG TG TG TG TG TG TG TG CA
47790 CA * 18 33/36 CA AA CA CA CA CA CA CA CA CA CA TA CA CA CA CA AA CA
48846 AC * 14 26/28 AC AC AC AC AC AC AC AC AC AC AC AC AT AG
53047 CA * 17 31/34 CA CA CG CA CA CA CA CG CA CA CA CA CA CA CA CA CT
57901 TC * 21 38/42 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TT TC TC GC CG TC
58856 AC * 21 38/42 AC AC GC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AA CC AA
59459 AT * 13 25/26 AT AT AT AT AT AT GT AT AT AT AT AT AT
66384 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AC GT
69158 TC * 10 18/20 TC TC GC TC CC TC TC TC TC TC
69179 CT * 26 47/52 CT CT CT CT CT CC CT CT CT CT CT CC CT CT CT CT CT CC CT CT CT CT CT CC CT TT
77592 AT * 11 20/22 AT AT AT AT AT AT AT TT AT AA AT
89661 TG * 10 18/20 TG TG GG TG TG TG CG TG TG TG
89737 TA * 12 22/24 TA TT TA TA TA TA TA AA TA TA TA TA
92105 CA * 10 18/20 CA CA CA CA CA CA CA GG CA CA
92148 AT * 11 20/22 AT AT AT AT AT AC AT AT AT AT GT
111707 TG * 10 19/20 TG TA TG TG TG TG TG TG TG TG
124294 AT * 10 18/20 AT AT AT AT AT AT AT AC AC AT
124965 TA * 13 24/26 TA TA TA TA TA TA TA TA TA CA TA TA CA
125648 TA * 11 20/22 TA TA TA TA CA TA TA CA TA TA TA
139385 TG * 11 20/22 TG TA TG TG TG TG TG TG TG TG TT
175629 AT * 12 22/24 AT AT AG AT AT AT AT AT GT AT AT AT
211472 TA * 10 18/20 TA TG TA AA TA TA TA TA TA TA
213383 TA * 11 20/22 TA TA TA TA TA TA TA TA TA AA AA
214946 TA * 11 21/22 TA AA TA TA TA TA TA TA TA TA TA
216160 TA * 11 20/22 TA TA TG CA TA TA TA TA TA TA TA
221520 TA * 12 22/24 TA TA TA TA TA TG AA TA TA TA TA TA
228146 AT * 10 18/20 AT TT AT AT GT AT AT AT AT AT
232587 TA * 10 18/20 TA TG TA CA TA TA TA TA TA TA
232702 AG * 10 19/20 AG AG AG GG AG AG AG AG AG AG
236944 AT * 10 18/20 AT AT AT AT AC AT AT AT AT AG
240535 GA * 12 22/24 GA GA GA GA GA GA TA GC GA GA GA GA
240770 CT * 11 20/22 CT CT CT CT CT CG CT CT TT CT CT
243690 AT * 10 18/20 AT TG AT AT AT AT AT AT AT AT
247965 TA * 14 26/28 TA TA TA TG TA TA TA TA TA TA TA TA TA TT
255218 CA * 10 18/20 CA CC CA CA CA AA CA CA CA CA
256710 AT * 15 28/30 AT AT AT GT AT AT AT AT AT AT AT AT AT TT AT
274211 AT * 11 20/22 AT GT AT AT AT AT GT AT AT AT AT
277196 AT * 13 24/26 AT AT AT AT AT AT AT AT AT AC AT AT AA
-----------------------------------------------------------------------------------------
Total sequence length......................... 298536
Total number of repeats detected.............. 42
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 10 11 1 1 2 2 4 1 2 1 0 0
15 to 19 1 0 0 0 0 2 1 0 0 0 0 0
20 to 24 0 0 0 0 1 0 0 0 1 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 1 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 11 11 1 1 3 4 5 1 3 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
11 AT + 11 TA = 22
1 AG + 1 GA + 2 CT + 3 TC = 7
1 GT + 5 TG + 4 CA + 3 AC = 13
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7293251|gb|AE003503.1|AE003503 Drosophila melanogaster genomic scaffold 142000013386053 section 20 of 30, complete sequence
Position Repeat Coverage Repeat
1052 GA * 12 22/24 GA GG GA GA GA GA GA GA GA GA AA GA
6580 CA * 12 23/24 CA CA CA CA CA CA CA CA CA CA CA CT
10941 GT * 12 22/24 GT GT GT GT GT GG TT GT GT GT GT GT
11476 CA * 11 21/22 CA CA CA CA AA CA CA CA CA CA CA
11585 TG * 12 23/24 TG TG TG GG TG TG TG TG TG TG TG TG
11938 CA * 10 19/20 CA CA CA CA CA CA CA CA CG CA
12502 AT * 10 18/20 AT AT AT AT AT AT AT GT AC AT
36258 AC * 13 25/26 AC AC AC AC AC AC AC AC AC AC AC AC AA
39480 TA * 10 18/20 TA TG TA TA TA TA TA TA CA TA
50264 CT * 17 31/34 CT CT CT CT CT CT CT CT CT CT CT CT CT CT GT TG CT
51824 TA * 10 18/20 TA TA AA AA TA TA TA TA TA TA
52875 AT * 12 22/24 AT TT AT AT AT GT AT AT AT AT AT AT
55931 AT * 10 18/20 AT AT AT AC AT AC AT AT AT AT
57568 AC * 11 20/22 AC AC TC AC AC AC AC AC AC AC AG
62909 AT * 12 22/24 AT GT AT AT AT AT AT AT AT GT AT AT
86558 CT * 10 18/20 CT CT CT CT TT CT CA CT CT CT
114115 CT * 12 22/24 CT CT CT CT CT CT CT CT GT CT CT TT
122741 TG * 10 18/20 TG GG TG TG TG TG TG TG TG TT
123119 GT * 12 22/24 GT GT GT AT GT GT GT GT GT GT GT GC
125939 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AC AC
143172 CT * 10 19/20 CT CT CT CT CT CT CT CT CG CT
155554 TG * 10 18/20 TG TG TG TG TT CG TG TG TG TG
158580 TA * 10 18/20 TA TA CA TA TA TA TA TA TA TT
161075 AG * 12 22/24 AG AC AG AG AG AG AG AG AG AG TG AG
194219 GT * 10 19/20 GT GT GT GT GT GT GT GT GT GA
202582 GA * 10 18/20 GA GA GA GA GA GA GG GA GT GA
206596 TG * 13 24/26 TG TG TG CG TG TG CG TG TG TG TG TG TG
206821 CA * 12 23/24 CA CA CA CA CA CA CA CA CG CA CA CA
206998 CT * 13 24/26 CT CT CT CT CT CT CT CT CC CT CT CG CT
214216 AT * 15 27/30 AT AT AT AT AT AT AT GT AT AT AT AT AT AT GC
236318 TA * 10 18/20 TA CA TA TA TA TA TA CA TA TA
238510 AT * 13 24/26 AT AT AT AT TT AT AT AT AT AT AT AA AT
241707 TG * 11 20/22 TG TT TC TG TG TG TG TG TG TG TG
248863 AT * 11 20/22 AT AT AT AT AT AT GT AA AT AT AT
269095 AT * 10 18/20 AT AC AT AT AT AT AT AT GT AT
275759 TC * 11 20/22 TC TC TC TC TC TC TC TC TC CC CC
276520 CA * 13 25/26 CA CA CA CT CA CA CA CA CA CA CA CA CA
283417 AT * 10 18/20 AT AT AT AT AT AT GT AT AT AC
287293 TA * 13 24/26 TA AA TA TA TA TA TA TA TA CA TA TA TA
292442 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CA GC
294753 CA * 15 28/30 CA CT CA CA CA GA CA CA CA CA CA CA CA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 300310
Total number of repeats detected.............. 41
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 9 5 1 2 2 6 5 3 1 4 0 0
15 to 19 1 0 0 0 0 1 0 0 0 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 10 5 1 2 2 7 5 3 1 5 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
10 AT + 5 TA = 15
1 AG + 2 GA + 5 CT + 1 TC = 9
3 GT + 5 TG + 7 CA + 2 AC = 17
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7293211|gb|AE003502.1|AE003502 Drosophila melanogaster genomic scaffold 142000013386053 section 19 of 30, complete sequence
Position Repeat Coverage Repeat
1644 AC * 10 18/20 AC AC AC AC GC AC GC AC AC AC
33030 TA * 10 18/20 TA TA TA AA TA TA TA TA TA TT
34011 AT * 17 31/34 AT AT AT AT AT AT AT AT CA AT AT AT AT AT AT AT CT
70083 AT * 16 29/32 AT AT AT AT AT TT AT AT AT AT AC AT AT AT AT AA
70571 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT GC GA
82662 AT * 10 18/20 AT AT AG AT AG AT AT AT AT AT
85445 AT * 13 24/26 AT AT CT AC AT AT AT AT AT AT AT AT AT
85473 AT * 10 18/20 AT AT AT AT AC AT AT AT AT AA
92372 GT * 10 18/20 GT AT GT GT GT GT GT AT GT GT
93190 TA * 12 22/24 TA TG TA TG TA TA TA TA TA TA TA TA
101786 TG * 10 18/20 TG CG TG TG TG TG CG TG TG TG
101989 TA * 17 31/34 TA TA TA TA TA TA TA TA TA AA TA TA TA TA CA TA CA
119585 AT * 10 18/20 AT AT AT AA AT AT AT AT AC AT
120864 TG * 10 18/20 TG TG TG TA TA TG TG TG TG TG
120967 AT * 15 27/30 AT AT AT AT AT AT AT AT AT GT AT AT AT GT CT
121207 GT * 11 20/22 GT GT CT GT GT GG GT GT GT GT GT
122174 TG * 12 22/24 TG TG TA TG TG TG TG AG TG TG TG TG
122743 TG * 16 29/32 TG TG TG TG TG TG TG TG TG TG TC TG TG TG TT TT
123566 TG * 12 22/24 TG TA TG TG TT TG TG TG TG TG TG TG
127049 GT * 17 31/34 GT GT TT TT GT GT GT GT GT GT GT GT GT GT GT GT GG
127346 TG * 15 27/30 TG TG TG TG CG CG TG TG TG TG TG TG TG TG TA
127971 GT * 10 18/20 GT GT GT TT GT GT TT GT GT GT
137130 TA * 10 18/20 TA TA TA TA CA TA TA TA GA TA
141434 AG * 26 47/52 AG AG AG AG AG AG AG AG AG AG AG AG AG AA AC AG AG AG AG AT AG AC AG AG CG AG
144541 AT * 10 18/20 AT AA AT AT AT GT AT AT AT AT
145189 CA * 10 18/20 CA CA CA CA CA CA TA CA CG CA
145360 GA * 11 20/22 GA GG GA GA GA GA GA GA TA GA GA
147854 TA * 12 22/24 TA TA CA TA TA TA TA TT TA TA TA TA
148709 AT * 10 18/20 AT TT AT AT AG AT AT AT AT AT
155865 GT * 11 20/22 GT GT GT GT GT GT GT TA GT GT GT
156006 GT * 10 18/20 GT GT GT AT GT GT GT GT GG GT
156248 TA * 10 18/20 TA TA TA TA TA TA TA TA TG TT
156365 AT * 13 24/26 AT AT AA AT AT AT AT AT AT AT AG AT AT
165206 GT * 12 23/24 GT GT GT GT GT GG GT GT GT GT GT GT
166381 GA * 12 22/24 GA GA GA GA GA GA GA GA GA AA TA GA
169343 TA * 11 20/22 TA TA TA GA TA TT TA TA TA TA TA
169378 AG * 10 19/20 AG AG AG AG AG AG AG AG AT AG
172720 TG * 16 30/32 TG TG TG TG AG TG TG TG TG TG AG TG TG TG TG TG
176251 GT * 10 18/20 GT GT GT GT GT GT GT GT GT CC
177749 AT * 12 23/24 AT AT AT AT AT AT AT GT AT AT AT AT
182081 TA * 10 18/20 TA TA TA TA TA TA TA TA TA GG
183497 GT * 10 19/20 GT GT GT GT TT GT GT GT GT GT
185734 AG * 13 24/26 AG AG GG AG AG AG AG AG AG AG AG AG CG
187819 TG * 13 24/26 TG TG TA TG TG TG TG TG TG TA TG TG TG
187850 GT * 10 18/20 GT GT GT GT GT GT GT GT GG GA
187890 GT * 10 18/20 GT GT GT GT GT GT GT TT GT GA
190500 GT * 16 30/32 GT GT GT GT GC GT GT GT GT GT GT GT GT GT GT AT
192375 AT * 12 22/24 AT AT AC AT AG AT AT AT AT AT AT AT
192401 AT * 10 18/20 AT AT AT AT AT AT GT AT AT TT
193605 GT * 12 22/24 GT GT GT GT GT TT GT GT GT GT GT GA
194207 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TC TT
196351 CA * 12 22/24 CA CA CA CA CA TA CA CA CA CA TA CA
196799 TG * 10 18/20 TG TC TG TG TG TG CG TG TG TG
196982 CA * 10 18/20 CA AA CA CA CA CA CA CA CA AA
197509 TA * 22 40/44 TA TA TA TT TA TA CA TA TA TA TA TA TA TA CA TA TA TA TA TA TA TT
199166 GT * 13 24/26 GT GC GT TT GT GT GT GT GT GT GT GT GT
199747 AT * 11 20/22 AT AT AT AA AT AT AT AT AT TT AT
203865 CA * 10 18/20 CA CA CA CA CA CA CA CA CG CG
213722 AT * 11 20/22 AT TT AT AT AT GT AT AT AT AT AT
220506 TA * 11 20/22 TA TA TA TA TA TC TA TA TA AA TA
220731 AT * 10 18/20 AT AT AT AT AT AT AT CT GT AT
221138 TG * 11 21/22 TG TG TT TG TG TG TG TG TG TG TG
224508 CA * 10 18/20 CA CA CA CA CG CA CA CG CA CA
227374 GA * 21 38/42 GA GA GA GA TA GA GA GA GA GA GA GA GA GA GA GA GA GA GA AA AG
228618 AT * 12 22/24 AT AT AT AT AT AT AT AT GT GT AT AT
229203 TA * 13 24/26 TA TA TG TA TA TA TA TA TA TA TA AA TA
229877 TG * 16 30/32 TG TG TG TC TG TG TG TG TG TG TG TG TG TT TG TG
233475 CA * 14 26/28 CA CA CA CA CA CA CA CA CA CA CA CA CA TT
240248 CA * 12 23/24 CA CA CA CA CA CA CA CA CA CA CA CT
241533 TG * 11 21/22 TG AG TG TG TG TG TG TG TG TG TG
241825 GT * 10 18/20 GT GT GC AT GT GT GT GT GT GT
242648 AC * 12 22/24 AC AC AC AC AC AC AC AC GC AC AC TC
244532 AC * 17 31/34 AC AC AC AT AC AC AC AC AC AC AC AC AC AC AC TC AG
244726 AG * 13 24/26 AG AG AA AG AG AA AG AG AG AG AG AG AG
245298 CA * 12 22/24 CA CA CA CA CA CA CA CA CA AA CC CA
247342 TG * 12 23/24 TG TG TG TG TG TG TG TG TG TG TT TG
250809 AC * 13 24/26 AC AT AC AC AT AC AC AC AC AC AC AC AC
254088 TA * 10 19/20 TA TA TA TA TA TA TA TG TA TA
260307 TA * 12 22/24 TA TG TA TG TA TA TA TA TA TA TA TA
271295 TA * 13 24/26 TA TC TA TA TA TA TA TA TA TA TA TT TA
272516 CA * 10 18/20 CA CG TA CA CA CA CA CA CA CA
272963 AG * 13 25/26 AG AG AG AG AG AG AG AG AG AG AG AG AA
273062 AC * 10 18/20 AC AC AG AG AC AC AC AC AC AC
284971 AC * 15 28/30 AC TC AT AC AC AC AC AC AC AC AC AC AC AC AC
285251 AT * 13 24/26 AT AC AT AT AT AT AT GT AT AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 301929
Total number of repeats detected.............. 85
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 15 12 4 2 4 9 10 14 0 0 0 0
15 to 19 3 1 0 0 2 0 4 2 0 0 0 0
20 to 24 0 1 0 1 0 0 0 0 0 0 0 0
25 to 29 0 0 1 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 18 14 5 3 6 9 14 16 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
18 AT + 14 TA = 32
5 AG + 3 GA + 0 CT + 0 TC = 8
16 GT + 14 TG + 9 CA + 6 AC = 45
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7293176|gb|AE003501.1|AE003501 Drosophila melanogaster genomic scaffold 142000013386053 section 18 of 30, complete sequence
Position Repeat Coverage Repeat
54403 GT * 15 28/30 GT GT AT GT GT GT GT GT GT GT GT GT GT GG GT
56138 GA * 13 24/26 GA GA GA GA GA TA GA GA GA GA GA GA GG
58381 CT * 10 18/20 CT CT CT CT CT TC CT CT CT CT
58405 CT * 11 20/22 CT CT CC CT AT CT CT CT CT CT CT
59988 AT * 11 20/22 AT AT AT AT AT TT AT GT AT AT AT
67050 AT * 10 18/20 AT AT AT AT AT AT AT AT AC AA
70371 TG * 10 18/20 TG TG TG TG TG TG TG TG TG CT
85404 TA * 18 34/36 TA TA TA TA TG TA TA TA TA TA TA TA TA TA TA TA TA GA
90680 AC * 25 45/50 AC AC AC AC AC AC AC AC AC AC AC AC AC AG AC AC AC AC AC AT AC AT AC AC CT
95520 AT * 10 18/20 AT AT AT TT AT AT CT AT AT AT
98232 TA * 12 22/24 TA TA TA TA TA TA TA TA TA TA TA GT
112017 AC * 11 20/22 AC AC AA AC GC AC AC AC AC AC AC
113568 CA * 17 32/34 CA CA CA CA CA CA CA CA CA CA CT CA CA CA CA CA CT
114623 CA * 11 20/22 CA CT CA CA CA CA CA CA CA CA CT
115155 CA * 10 18/20 CA CA CC CA CA CA CA CA CA AA
117002 CA * 14 26/28 CA CT CA CA AA CA CA CA CA CA CA CA CA CA
117296 CT * 13 24/26 CT CG CT CG CT CT CT CT CT CT CT CT CT
117342 CT * 11 20/22 CT CT CG TT CT CT CT CT CT CT CT
135583 CA * 15 27/30 CA CA CA CA CA CA CA CA CA CA CA CA CA AA TC
137326 TA * 10 18/20 TA TA TA AA AA TA TA TA TA TA
137433 AC * 11 20/22 AC AC AC AC GC AC AC AC AC AC TC
143268 TA * 11 20/22 TA TA TA TA TA TA TA TA TA TG TG
147329 TA * 10 19/20 TA TA TA TA TA CA TA TA TA TA
151316 AC * 12 22/24 AC AC AC AC TC GC AC AC AC AC AC AC
151427 TA * 12 22/24 TA TA CC TA TA TA TA TA TA TA TA TA
154179 CA * 12 23/24 CA CA CA CA CA AA CA CA CA CA CA CA
162206 TA * 10 18/20 TA TA TA TG TA TA TA TA TG TA
168832 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA CA AG
172857 TG * 15 28/30 TG TG TG TG TG TG TG TG TG CG TG TG TG TG AG
174549 AC * 15 27/30 AC AC AC AC AC AC GC AC AC AC AC AC AC AC TT
177489 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CT CT CA
182906 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC AC GC TC
183228 AC * 10 18/20 AC AC AA AC AC AC AC GC AC AC
186096 TA * 13 24/26 TA TA TG TA TA TA TA TA TA TA TA TA TT
188767 CA * 12 22/24 CA TT CA CA CA CA CA CA CA CA CA CA
197114 TA * 10 18/20 TA TA TG TA TT TA TA TA TA TA
198714 TG * 20 36/40 TG TG TG TG TG TG TT TC TG TG TG TG TG TG TG TG TG TG CG AG
200197 TA * 11 20/22 TA TG TA TA TA TA TA TA TA TA AA
203885 AG * 10 18/20 AG AG AG AG AG AG AG CG TG AG
231190 TG * 13 25/26 TG GG TG TG TG TG TG TG TG TG TG TG TG
243322 AT * 11 21/22 AT AC AT AT AT AT AT AT AT AT AT
252520 TA * 10 18/20 TA TA CA TA TG TA TA TA TA TA
260779 AT * 11 20/22 AT AT AT AT AT GT AT AC AT AT AT
260806 AT * 15 27/30 AT AT AT AT GT GT AT AT AT AT AT AT AT AT AG
285068 TA * 10 18/20 TA TA TA TA TA TA TA TA TG CA
292680 AT * 10 18/20 AT AT AT AT AG AT AT AT AT AA
295689 TA * 11 21/22 TA TA TA TA TC TA TA TA TA TA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 300191
Total number of repeats detected.............. 47
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 6 12 1 1 5 7 2 0 0 4 0 0
15 to 19 1 1 0 0 1 2 1 1 0 0 0 0
20 to 24 0 0 0 0 0 0 1 0 0 0 0 0
25 to 29 0 0 0 0 1 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 7 13 1 1 7 9 4 1 0 4 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
7 AT + 13 TA = 20
1 AG + 1 GA + 4 CT + 0 TC = 6
1 GT + 4 TG + 9 CA + 7 AC = 21
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7293108|gb|AE003500.1|AE003500 Drosophila melanogaster genomic scaffold 142000013386053 section 17 of 30, complete sequence
Position Repeat Coverage Repeat
713 TG * 10 18/20 TG TG TG TG TG CG AG TG TG TG
7301 TG * 10 18/20 TG TG TG TG TG GC TG TG TG TG
47683 AT * 10 18/20 AT AT AA AT AT AT AC AT AT AT
83217 TA * 12 22/24 TA TG TG TA TA TA TA TA TA TA TA TA
93817 AT * 10 18/20 AT AT AT AA AT AT AT AT AA AT
102572 GT * 11 21/22 GT GT GT GT GT GT GT GT AT GT GT
104003 TA * 10 18/20 TA TA TA TA TA TG TA CA TA TA
107832 TG * 22 41/44 TG TG TG TG AG TG TG TG TG TG TG TG TG TG TG TG TT TG TG TG CG TG
125252 GA * 11 20/22 GA GC GA GG GA GA GA GA GA GA GA
127583 AT * 10 19/20 AT CT AT AT AT AT AT AT AT AT
137282 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AT CA
138028 TA * 11 20/22 TA AA AA TA TA TA TA TA TA TA TA
150320 AT * 10 18/20 AT AT TT AT AT AT TT AT AT AT
178801 AT * 10 19/20 AT AT AC AT AT AT AT AT AT AT
228908 TA * 10 18/20 TA TA TA AA TA TA TA TA TA CA
236918 TA * 10 18/20 TA TA TA CA TA TG TA TA TA TA
242623 TG * 12 23/24 TG TG TG TG TG TG TG TG TG TG TG TT
245861 TA * 10 18/20 TA TA TA TA TA TA TA TT TA AA
262476 TA * 11 20/22 TA TA TA TA TA TA TA TA TA TG CA
262821 AT * 11 20/22 AT AT AT AG AC AT AT AT AT AT AT
263035 AT * 15 28/30 AT AT AT AT AT AT AT AT AC AT AT AT AT AT AC
279281 TA * 21 38/42 TA TA TA TA CA TA TA TA TA TA CA TA TA TA TC TA TA TA TA TA TT
279325 TA * 16 29/32 TA TA TT TA TA TA TA TA TA CA TA TA TA TA TT TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 327311
Total number of repeats detected.............. 23
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 7 7 0 1 0 0 3 1 0 0 0 0
15 to 19 1 1 0 0 0 0 0 0 0 0 0 0
20 to 24 0 1 0 0 0 0 1 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 8 9 0 1 0 0 4 1 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
8 AT + 9 TA = 17
0 AG + 1 GA + 0 CT + 0 TC = 1
1 GT + 4 TG + 0 CA + 0 AC = 5
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7293065|gb|AE003499.1|AE003499 Drosophila melanogaster genomic scaffold 142000013386053 section 16 of 30, complete sequence
Position Repeat Coverage Repeat
2361 GT * 17 31/34 GT GT TT GT TT GT GT GT GT GT GT GT GT GT AT GT GT
2601 GT * 10 18/20 GT GT GT GT AA GT GT GT GT GT
2957 AG * 10 18/20 AG AG AG AG TG AG TG AG AG AG
4395 AT * 10 18/20 AT CT AT AT AT AT AT AT AT GT
5238 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC AC TT AC
5358 GT * 10 18/20 GT AT GT GT GT GT GT GC GT GT
6182 GT * 13 24/26 GT GT GT CT AT GT GT GT GT GT GT GT GT
6616 GT * 10 18/20 GT GT GT GT GT GC GT GT GT GG
16090 TG * 11 20/22 TG TA TC TG TG TG TG TG TG TG TG
16132 TG * 12 22/24 TG TG TG TG TG TG TC TG TG TG TG GG
17059 TG * 10 19/20 TG TG TG TG TG TG TG CG TG TG
17548 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CT TA CA
17574 CA * 17 32/34 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA GT
19856 AT * 12 22/24 AT AT CA AT AT AT AT AT AT AT AT AT
24429 CA * 10 18/20 CA CA CA AA GA CA CA CA CA CA
26877 CA * 10 18/20 CA CA CA CA CA CA CT CA CT CA
28125 AC * 10 18/20 AC TC GC AC AC AC AC AC AC AC
28161 CA * 11 20/22 CA GC CA CA CA CA CA CA CA CA CA
31485 TG * 10 18/20 TG CG TG CG TG TG TG TG TG TG
32050 AC * 17 31/34 AC AC AC AC AC AC AC AC AG AC AC AG AC AC AG AC AC
32784 CA * 12 23/24 CA CT CA CA CA CA CA CA CA CA CA CA
33432 GT * 11 20/22 GT GT GT GT GT TT GA GT GT GT GT
36415 AT * 16 29/32 AT AT AT AT AT TT CT AT AT AT AT AT AT AT AT TT
42505 TG * 13 24/26 TG TG AG TG TG TG TG TG TG TG TG TG TT
78815 GT * 15 28/30 GT GT GT GT GT GT GT GT GC TT GT GT GT GT GT
79323 GT * 10 18/20 GT AT GT GT GT GT GT GT GT AT
80593 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA AC CA
80655 GA * 16 29/32 GA AA GC GA GA GA GA GA GA GA GA GA GA GA GA TA
88381 CT * 10 18/20 CT CT CT CT CT CT CT CT GT CG
92393 TG * 20 36/40 TG TG TG TG TG TG TA TG TG TT TG TG TG TG TG TG TG TG TG CA
93768 CA * 13 24/26 CA CA CA CA CA CA CA CG CA CA CA CA TA
105072 TA * 12 22/24 TA TA TA TA TA TT TA TA TA TA TC TA
106521 TA * 15 28/30 TA TA TA TA TA TA TA TT TA TA TA TA TA TT TA
107196 AT * 12 22/24 AT TT GT AT AT AT AT AT AT AT AT AT
107569 GT * 13 24/26 GT TG GT GT GT GT GT GT GT GT GT GT GT
119453 TA * 10 18/20 TA CA TA TA GA TA TA TA TA TA
135054 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG GT
136484 TA * 10 18/20 TA AA TA TA TA TA TA TA TA TG
141889 TC * 13 25/26 TC TC AC TC TC TC TC TC TC TC TC TC TC
142409 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CC TA
158590 AT * 12 22/24 AT AT AT AT AT AG AT AC AT AT AT AT
158954 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TG TG TA TT TG GG
159176 TA * 10 18/20 TA AA TA TA TA AA TA TA TA TA
175518 AT * 10 18/20 AT AC AT TT AT AT AT AT AT AT
186809 AT * 10 18/20 AT AT AT AT AT AT AT AT AG AG
189161 CA * 16 30/32 CA CA CA CA CT CG CA CA CA CA CA CA CA CA CA CA
189710 CT * 15 28/30 CT CT CT CC CT CT CT CT CT CT CT CT CT TT CT
198962 TA * 16 29/32 TA TA TA TA TA TA TA TA TC AA TA TA TA TA TA TG
199378 AT * 10 18/20 AT AT GT AT AT AT AT AT AT TT
199752 TG * 13 24/26 TG TG TG TG TG TG TA TG TG TA TG TG TG
200000 AT * 20 36/40 AT AT AT AT GT AT AT AT AT AT AT AT AT AT GT AT AT AT AA AA
200186 TG * 10 18/20 TG TG TG TG TG TG TG TG TT TT
200500 TC * 10 18/20 TC CC TC TC TC TC TC TC TC TA
200729 TG * 16 29/32 TG TG TG GT TG TG TG TG TG TG TG TG TG TG TT TG
209621 TA * 12 22/24 TA TA TA TA TA TA TA TA TA CA TA TC
213257 AT * 12 22/24 AT AT AT AT AT AC AT AC AT AT AT AT
214111 AC * 10 19/20 AC AC AC AC AC AC AC AC AC AT
215253 GA * 13 24/26 GA GA GA GA GA GA GA GA GA GA GA GG GC
225563 AT * 11 20/22 AT AT AT AT AT GT GT AT AT AT AT
229125 TC * 14 26/28 TC TC CC TC TC TC TC TC TC TC TC TC TC TG
235664 TA * 10 18/20 TA TC TA TA TA TG TA TA TA TA
242099 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG TG GA
247067 AC * 10 18/20 AC GC AC AC AA AC AC AC AC AC
291502 CA * 10 19/20 CA CA CA CA CA CA CA CA CA CC
293312 TA * 10 18/20 TA TA TA TA TG TA CA TA TA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 301550
Total number of repeats detected.............. 65
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 9 7 1 1 4 9 9 7 3 1 0 0
15 to 19 1 2 0 1 1 2 2 2 0 1 0 0
20 to 24 1 0 0 0 0 0 1 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 11 9 1 2 5 11 12 9 3 2 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
11 AT + 9 TA = 20
1 AG + 2 GA + 2 CT + 3 TC = 8
9 GT + 12 TG + 11 CA + 5 AC = 37
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7293037|gb|AE003498.1|AE003498 Drosophila melanogaster genomic scaffold 142000013386053 section 15 of 30, complete sequence
Position Repeat Coverage Repeat
10584 TA * 11 20/22 TA TA TA TA TG CA TA TA TA TA TA
13188 TA * 10 18/20 TA TA TG TA TA AA TA TA TA TA
14808 TA * 22 40/44 TA TA TA TA AA TA TA TA TA AA TA TA TA TA AA TA TA TA TA TA TA TC
23093 AT * 11 20/22 AT AT AT AT AT AT AT AT AC AT AC
34565 AC * 13 24/26 AC AC AG AG AC AC AC AC AC AC AC AC AC
41494 CA * 13 24/26 CA CA TT CA CA CA CA CA CA CA CA CA CA
51344 GT * 13 24/26 GT GT TT CT GT GT GT GT GT GT GT GT GT
52687 AG * 22 40/44 AG AT CG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AC AT
56804 AT * 11 20/22 AT AT AT AT AT AT AT AT AC AT TT
59240 AC * 12 22/24 AC AC AT AC AC AC AC AC AC AC AT AC
65724 TG * 12 22/24 TG GG TG TG TG TG TG TG TG TG TT TG
72187 CT * 13 24/26 CT GG CT CT CT CT CT CT CT CT CT CT CT
78426 AT * 12 22/24 AT AT AT AT AT AT AA AT AT AT AC AT
92286 CA * 13 24/26 CA CG CA CA CA CA CA CA CA CA CA CA CT
110887 GT * 10 18/20 GT GT GT GT GT GT GT GT GT AA
112066 TG * 13 24/26 TG TG TG TG TG TG TG TG GC TG TG TG TG
127527 TA * 10 18/20 TA GC TA TA TA TA TA TA TA TA
128776 TG * 10 18/20 TG TG TG TC TG TG TG TG TG TA
133813 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA AC CA
136745 TA * 11 20/22 TA TA TA TA TA TG TA TA TA AA TA
137210 CA * 13 25/26 CA CA CA CA CA TA CA CA CA CA CA CA CA
144152 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG TG GT
156705 TG * 13 24/26 TG TG CG TT TG TG TG TG TG TG TG TG TG
161354 TG * 11 20/22 TG TG TG TA TG TG TG TG TG AG TG
167014 GT * 12 22/24 GT GT GT GT GC GT GT GT GT GC GT GT
168721 GT * 17 32/34 GT GT GT GT GT GT GT GT GT GT GT GT CT GT GT GT GG
171245 TG * 20 36/40 TG TG TG CG TG TG TG TG TG CG TG TG TG TG TG TG TG TG TG GC
176907 CT * 12 22/24 CT CT CT CT GT AT CT CT CT CT CT CT
184964 AC * 11 21/22 AC AC AC AC AC AC AC AC AC AC AA
185632 AC * 12 23/24 AC AC AC AC AC AC AC AC AC AC AC AA
189199 CA * 10 18/20 CA CA CT CA CA CA CA CA CA CC
193895 TG * 13 24/26 TG TG TG TG TG TG TG TG TC TG TG TG TA
195506 AT * 11 20/22 AT AT AT AC AT AT AC AT AT AT AT
200608 CA * 10 18/20 CA CA CA CA CA CA CC CG CA CA
201666 AT * 27 49/54 AT AT AC AT AT AT AT AT GT AT AT AT AT AT AT AA AT AT AT AT AT AT AT AT AT GC AT
207177 AT * 18 33/36 AT AT AT AC AT AC AT AT AT AT AT AT AT AT GT AT AT AT
207297 GT * 10 18/20 GT GT GT GT GT GT GT GT TT CT
213700 CA * 12 22/24 CA CG CA CA CA CC CA CA CA CA CA CA
213751 TG * 11 21/22 TG TG TG TG TG TG TG TG TG TT TG
213852 AC * 11 20/22 AC AA AC GC AC AC AC AC AC AC AC
221981 TG * 12 22/24 TG TG TG TG TA TG CG TG TG TG TG TG
228063 CA * 16 29/32 CA CA CA CA CA CA CA AA CA CA CA CA CC CA CA AA
235144 CA * 11 20/22 CA GA CA CA CA CA CA AA CA CA CA
235642 AT * 12 22/24 AT AT AT AC AT AT AT AT AT TT AT AT
235723 TA * 10 18/20 TA CA TA AA TA TA TA TA TA TA
235744 AT * 12 22/24 AT AT AT AT AT AT AT AT AA AA AT AT
235770 AT * 18 33/36 AT GT AT AT AT AT AT CT AT AT AT AT AT AT AT AT AT TT
236799 AC * 10 18/20 AC AC AC AC AC AC AC AC GC CC
242505 TC * 10 18/20 TC TC TC TC AC TC TG TC TC TC
259872 TA * 16 29/32 TA CA TA TA TA TA TG TA TA TA TA TA TA TA TT TA
260519 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG GG TG GG
260909 TG * 12 22/24 TG TA TG TG TT TG TG TG TG TG TG TG
260936 GT * 10 18/20 GT GT CT GT CT GT GT GT GT GT
261697 CT * 16 29/32 CT CA CT CT CT CT CG CT CT CT CT CT CT CT TT CT
265399 AC * 10 18/20 AC CC AC AC TC AC AC AC AC AC
265830 AG * 22 40/44 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AA AG GG AG AG GG CG
266821 GT * 12 22/24 GT AT GT AT GT GT GT GT GT GT GT GT
271589 AC * 10 18/20 AC AC AT AC AC AC AC AC GC AC
273247 CA * 10 19/20 CA CA CA CA CA CA AA CA CA CA
280047 CA * 15 28/30 CA CA CA CA CA CA CA CA CA CA CA CA AG CA CA
281677 TA * 12 22/24 TA TA TA TA GA TA TA TA TA TA TA TT
283442 CA * 14 26/28 CA CA CA CA CA CA TA CA CA CA CA CA CA TA
283689 TG * 10 19/20 TG GG TG TG TG TG TG TG TG TG
292791 CA * 18 33/36 CA CA TA CG CA CA CA CA CA CA CA CA CA CA CA AA CA CA
295947 AT * 10 18/20 AT TT TT AT AT AT AT AT AT AT
297673 AT * 11 20/22 AT AT AT AT GT AT AT AT AT AT GT
298435 TA * 10 18/20 TA TA TA TA TA TA TA TA TG TG
300562 TA * 13 24/26 TA TA TA CA TA TA TA TG TA TA TA TA TA
301371 AG * 11 20/22 AG AG AG AG AG AA AG AG AT AG AG
311741 TA * 13 24/26 TA TA TA TA TA TA TA TA TA TA TA CA TT
312638 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG TT CG
312971 AG * 10 18/20 AG AG AC AG AG AC AG AG AG AG
313018 GA * 10 18/20 GA GA GA GA GA GA GA GA GA CG
313060 CA * 10 18/20 CA CA CA CA CA CA TA CA CA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 313384
Total number of repeats detected.............. 74
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 8 9 2 1 8 11 13 6 1 2 0 0
15 to 19 2 1 0 0 0 3 0 1 0 1 0 0
20 to 24 0 1 2 0 0 0 1 0 0 0 0 0
25 to 29 1 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 11 11 4 1 8 14 14 7 1 3 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
11 AT + 11 TA = 22
4 AG + 1 GA + 3 CT + 1 TC = 9
7 GT + 14 TG + 14 CA + 8 AC = 43
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7293000|gb|AE003497.1|AE003497 Drosophila melanogaster genomic scaffold 142000013386053 section 14 of 30, complete sequence
Position Repeat Coverage Repeat
185 TA * 10 18/20 TA TA TA TA GA TA TA TA TT TA
1216 TA * 11 20/22 TA CA TA TA CA TA TA TA TA TA TA
1546 TA * 12 23/24 TA TA TA TA TA TA TA TA TA TA TA TG
1667 AT * 16 29/32 AT AC AT AA AT AT AT AT AT AT AT AT AT AT AT TT
9772 TG * 10 18/20 TG TG TG TG TG TG TG TG TT TC
10281 AT * 12 22/24 AT AT AT AC AT AA AT AT AT AT AT AT
21476 AC * 20 36/40 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC TT AA GC
26579 TA * 10 18/20 TA TA TA TA TA TA TA TT TA TT
28836 TA * 10 18/20 TA TG TA TA TG TA TA TA TA TA
37117 CT * 11 21/22 CT CT CT CT CT CT CT CT CT CC CT
37424 CA * 16 29/32 CA CA CA CA CA CA CA CA CA CA CA CA CA CG CA TT
39728 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG TG AT
44690 TG * 10 18/20 TG TG TG TG CG TG TG TG TG TC
47929 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC AC AG AG
52067 CA * 15 28/30 CA CA CA CA CA CA CA TA CA CA CA CG CA CA CA
79222 AT * 10 18/20 AT AT AT AC AT AT AT AT GT AT
84637 AT * 13 25/26 AT AT AT AT AT AT GT AT AT AT AT AT AT
136597 TA * 10 18/20 TA TA TA TA TA TA TA TA TA AT
138339 TA * 13 24/26 TA TA AA TA TA TA TA TA TA TT TA TA TA
138567 CA * 37 67/74 CA CA CA CA CA CA CA CA CA CA CA CA AA CA CT CA CA CA CA CA CA CA CA AA CA CT CT CA CA CA CA CA CA TA AA CA CA
144427 AT * 30 55/60 AT AT AT AT AT AT AT AT AT CT AT AT AT AT AT AT CT AT AT AT AT AT AT TT GT AT AT TT AT AT
145624 AC * 10 18/20 AC AC AT AC AC AC AC AT AC AC
150038 AT * 10 18/20 AT AT AT AT AT AA AT AC AT AT
167952 AT * 13 24/26 AT AT AT AT AC AT AT AT GT AT AT AT AT
168639 CA * 11 20/22 CA CT CA CA CA CA CG CA CA CA CA
169510 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT GC CT
169727 AC * 11 20/22 AC CC AC AC AC AC AC AC AC GC AC
171677 TG * 12 22/24 TG TG AG TG TG CG TG TG TG TG TG TG
171734 TG * 10 18/20 TG TG TG TG TG TG TG GT TG TG
173221 TG * 13 25/26 TG TA TG TG TG TG TG TG TG TG TG TG TG
179488 AC * 12 22/24 AC AC TG AC AC AC AC AC AC AC AC AC
183144 GA * 22 40/44 GA GC GA GC GA GA GA GA GA GA GA GA GA GA GA GA GG GA GA AA GA GA
184183 GT * 10 18/20 GT GT GT GT AT GT GT GT AT GT
186705 CA * 11 20/22 CA AA CA CA CA CG CA CA CA CA CA
190805 GT * 10 18/20 GT GT GT GT GT GT GT GA GT TT
190962 AG * 12 22/24 AG AT AG AG AG AA AG AG AG AG AG AG
190991 CA * 12 22/24 CA GT CA CA CA CA CA CA CA CA CA CA
193252 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TG GC
196297 TG * 11 20/22 TG TG TA TG TG TG TG TG TG TG AG
201925 TG * 10 18/20 TG TG TG TG TG TG TG TG TG CA
203802 AG * 10 18/20 AG AG AG AG AG AG AG AT AG AT
212681 CT * 12 22/24 CT CT CT CT CT CT CT CT CT CT AT GT
217718 CT * 10 18/20 CT AT CC CT CT CT CT CT CT CT
217743 AC * 12 22/24 AC AC AC AT AC AC AA AC AC AC AC AC
217976 AT * 12 22/24 AT TT AT AT AT AT GT AT AT AT AT AT
218161 CA * 17 31/34 CA CA CA CA CA CA CA CA CA CA CA CT TA CA CA CA GA
219670 TC * 15 27/30 TC TC TG TC TC TC TC TC TC TC TC AC TC TC TT
233988 CT * 17 31/34 CT CT CT CT CT CT CT CT CT CT CT CT CA CT CT TT TT
235645 GA * 15 27/30 GA AA GA GA GA GA GA GA GA GA GA AA GA GA GT
240842 AG * 16 29/32 AG AA AA AG AG AG AG AG AG AG AG AG AG AG AG AT
260453 AC * 12 23/24 AC AC AC AC AC AC AC AC AC AC AC GC
283304 TA * 11 20/22 TA TA TA TA TA TA TA TA TA GG TA
284693 AG * 15 27/30 AG AG AA AG AG AG AT AG AG AG AG AG AG AG AT
292359 AT * 10 18/20 AT AT AT AT AT AT AA AT AA AT
297823 CA * 12 23/24 CA CA CA TA CA CA CA CA CA CA CA CA
-----------------------------------------------------------------------------------------
Total sequence length......................... 302494
Total number of repeats detected.............. 55
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 7 8 2 0 6 4 9 3 0 3 0 0
15 to 19 1 0 2 1 0 3 0 0 1 1 0 0
20 to 24 0 0 0 1 1 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 1 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 1 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 9 8 4 2 7 8 9 3 1 4 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
9 AT + 8 TA = 17
4 AG + 2 GA + 4 CT + 1 TC = 11
3 GT + 9 TG + 8 CA + 7 AC = 27
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7292986|gb|AE003496.1|AE003496 Drosophila melanogaster genomic scaffold 142000013386053 section 13 of 30, complete sequence
Position Repeat Coverage Repeat
15888 TC * 17 32/34 TC GC TC TC TC TC TC TC TC TC TC TC TC TC TC TC GC
16166 TC * 11 20/22 TC AC TC TC TC CC TC TC TC TC TC
17346 CA * 10 19/20 CA CA CA CA CA CA CA CA CA CG
25821 CA * 12 22/24 CA CA CA CA CA CA CA AA CA CA CT CA
26502 AT * 10 18/20 AT AT AG AT AT AC AT AT AT AT
26974 TG * 10 18/20 TG TG TG TG TG GG TG GG TG TG
27532 GT * 12 22/24 GT GT GT GT GT GT GT GT AT GT GT CT
28471 GT * 12 23/24 GT GT GT GT GT GT GT GT GT GT GT GA
29401 AC * 16 29/32 AC AC AC AC AC AC AC AC AC AC AC AC AC TC AA AG
37351 CA * 10 19/20 CA CA CA CA CA CA CA CA CA CC
42558 CA * 20 36/40 CA CA CA CA CA AA CA CA CA CA CA CA CA CA CA CA CA CA TC CC
45336 AC * 16 29/32 AC AC AC AA AC AT AC AC AC AC AC AC AC AC AC TC
45505 CA * 16 29/32 CA CA CA CA CA CA CA AA CA CA GA CA CA CA CA CT
48953 GT * 10 19/20 GT GT GT GT GT GT GT GT GT GG
56694 AC * 10 18/20 AC AC AC AC AC AC AC GC AT AC
56716 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC AC AC TA
57898 AC * 11 20/22 AC AC AC AC AC AC AC TT AC AC AC
60174 TG * 17 32/34 TG TG CG TT TG TG TG TG TG TG TG TG TG TG TG TG TG
70805 TA * 10 18/20 TA TA TA TA TA TA TA TA TA AC
72329 TG * 11 21/22 TG TG TG TG TG TG TG TG TG TG TA
76276 AC * 15 27/30 AC AC AC AC AC AC AC AC AC AC AC AC AG AG AG
78171 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CA TG
78209 CA * 10 19/20 CA CA CA CA TA CA CA CA CA CA
78385 TG * 13 24/26 TG TG TG TG AG TG TG TG TG TG TG TA TG
78669 AC * 12 22/24 AC GC AC AC AC AC AC AC AC AC AC CC
79243 AC * 12 22/24 AC AC AG AT AC AC AC AC AC AC AC AC
79409 AT * 10 18/20 AT AT AT AT GT AT AT AT GT AT
80557 CA * 11 20/22 CA CA CA CA CA CA CA CA CA TA GA
83128 CA * 10 18/20 CA CT CA CA CA CA CA CA TA CA
86971 AC * 11 20/22 AC AC TC AC AC AC AC TC AC AC AC
96025 TA * 11 20/22 TA TA TA TT TA TA TA TA TA TA TT
96412 TA * 11 20/22 TA TA TA AA TA TA TA TA TA TT TA
97469 AT * 10 18/20 AT AT AT GT AT AT AT AT AG AT
102784 AC * 11 20/22 AC AC AC GC AC AC AT AC AC AC AC
102981 AT * 16 29/32 AT AT AT AT AT AT AT AT AT TT AT AT AT AT AG TT
104274 AT * 12 22/24 AT AT AT AT AT AT AT GT AT GT AT AT
110699 TG * 13 24/26 TG CG TG TG TG TG TG TG TG CG TG TG TG
113439 CA * 25 45/50 CA CA CA CA CA CA CA CA CA CA CA CA CA CA AA CG CA CA CA CA CA GA CA CA GG
123539 AT * 11 20/22 AT AT AC AG AT AT AT AT AT AT AT
125182 AT * 18 33/36 AT AT AC AT AT AC AT AT AT AT AT AT AT AT GT AT AT AT
126231 AT * 13 24/26 AT AT GT AT AT AT AT AT AT AC AT AT AT
131273 AT * 16 29/32 AT AT AT AT TT AT AT AT AT AT AT AT GT AT GT AT
136085 AC * 11 21/22 AC AC AC AC AC AC AC AC AC AC TC
138130 TA * 10 18/20 TA TA TA CA TA TA TA AA TA TA
138472 GT * 13 24/26 GT GG GC GT GT GT GT GT GT GT GT GT GT
141331 AG * 13 24/26 AG AG AG AG AG AG AG AG AG AG AG AA AT
146881 GT * 15 27/30 GT GT GT GT AT GT AT GT GT GT GT GT GT GT GG
157488 CA * 11 20/22 CA AA CA CA CA CA CA CA CA TA CA
165251 TG * 11 20/22 TG TG TG TG TG TG TG AG TT TG TG
165355 CT * 11 20/22 CT CT CT CT CT CT CT CT GT CT TT
179023 GT * 15 28/30 GT GT GT GT GT GT GT GT GT GT GA GT GT TT GT
180465 CA * 10 18/20 CA CG CA CA CA CA CA CG CA CA
183619 GT * 11 20/22 GT GT GT GT GT GT GT GT GT AA GT
185832 GT * 16 29/32 GT GT GT GT GT GT GT GT GT GT GT GT GA GT AT GA
187473 TA * 11 20/22 TA TA AA CA TA TA TA TA TA TA TA
194205 TG * 15 28/30 TG TG TG TG TG TG TG TG TG TG TG TG TG TA TT
197594 AT * 18 33/36 AT AT TT AT TT AT AT AT AT AT AT AT AT AT TT AT AT AT
197702 TG * 20 37/40 TG TG TG TG TG TG TG TG TG TG TG GG TG TG TG TA AG TG TG TG
197798 AT * 17 31/34 AT AT AT AT AT AT CT AT AT AT AT AT AT AT AT AG GT
207052 TG * 11 21/22 TG TG TG TG TG TG TG TG TG TG GG
223912 AC * 17 32/34 AC AC GC AC AC AC AC AC AC AC AC AC AC AC AC AC AT
226112 TA * 14 26/28 TA TA TA TA TG TA TA TA TA TA TA TA TA TT
237525 CA * 10 18/20 CA CA CA CA CA CA CA AC CA CA
237548 AC * 10 18/20 AC AT AG AC AC AC AC AC AC AC
237929 TG * 21 38/42 TG TG CG TG CG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TC AG
245868 AT * 16 29/32 AT AT AC AT AT AT AC AT AT AT AT AT AT AT AT AG
251378 AT * 10 18/20 AT AT AC AT AT AT GT AT AT AT
266532 TG * 12 22/24 TG TG TG TG TG TG TG TG TG AA TG TG
266592 TG * 10 18/20 TG TG TG TG TG TG TG TG TT TA
271257 AT * 10 18/20 AT AT AT AT AA GT AT AT AT AT
273561 CA * 23 42/46 CA CA CA CA CA CA CA CA CA CA CA GA CG CA CA CA CA CA CA CC CA AA CA
275645 TA * 11 20/22 TA TA TA TA TA TA TA TA TA TG TT
276514 AC * 15 28/30 AC AC AC AC AC AC AC AC AC GC AC AC AC AC AA
282580 AT * 11 20/22 AT AT AT AT AT AT AT AA AT AT AA
283572 AC * 17 31/34 AC AC AC GC AC AC AC AC AC AC AC AC AC AC AC TC AA
-----------------------------------------------------------------------------------------
Total sequence length......................... 299357
Total number of repeats detected.............. 75
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 9 7 1 0 9 10 8 5 1 1 0 0
15 to 19 6 0 0 0 6 1 2 3 1 0 0 0
20 to 24 0 0 0 0 0 2 2 0 0 0 0 0
25 to 29 0 0 0 0 0 1 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 15 7 1 0 15 14 12 8 2 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
15 AT + 7 TA = 22
1 AG + 0 GA + 1 CT + 2 TC = 4
8 GT + 12 TG + 14 CA + 15 AC = 49
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7292953|gb|AE003495.1|AE003495 Drosophila melanogaster genomic scaffold 142000013386053 section 12 of 30, complete sequence
Position Repeat Coverage Repeat
31273 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT CT CT
31975 AT * 10 18/20 AT AT AT AT AT AT AT AT AT TG
33756 AT * 11 20/22 AT AT AT GC AT AT AT AT AT AT AT
35712 GT * 10 18/20 GT GC GT GT GT GT CT GT GT GT
38836 TC * 11 20/22 TC TC TC TT TC CC TC TC TC TC TC
60280 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AT AC AT AC
60714 AT * 10 18/20 AT AT AT AT AT AT TT AT TT AT
70008 AT * 10 18/20 AT AC CT AT AT AT AT AT AT AT
88651 TA * 15 27/30 TA TA AA TA TA TA TA TA TA TA TA TT TA TA TC
90914 TA * 10 18/20 TA TA TA TA TA TA TA TA TC AA
91088 AT * 12 22/24 AT AT AA AT TT AT AT AT AT AT AT AT
99572 AT * 10 18/20 AT AT AT AT AT AT AT AC AT AA
103448 CA * 10 18/20 CA CA CA CA CA CA CA CA CA AC
112290 AT * 10 18/20 AT AA AT AT AT AT AT AG AT AT
113559 TG * 17 31/34 TG TG TG CG TG TG TG TG TG TG TG TG TG TG TG TA TC
113682 GT * 11 20/22 GT GG GT GA GT GT GT GT GT GT GT
119277 AT * 10 18/20 AT AT GT AT AT AT AT AT AT AG
121471 TG * 22 40/44 TG TG AG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG CG AG TT
124872 TA * 10 18/20 TA TA TA TA TA TA TA AA TA TT
132447 AC * 10 18/20 AC AC AC AC AC AC AC AC AA AA
134274 TA * 10 18/20 TA TA TA TA TT TA TA TG TA TA
134296 TA * 11 20/22 TA TA TA TA CA TA TA TG TA TA TA
142884 GT * 10 19/20 GT GT GT GT GT GT GT GT GT GG
143725 TG * 12 22/24 TG TG TG TG TG TG TG TG CG TG TG CG
145503 AT * 10 19/20 AT AT AT AT AT AT AT AT AT AN
147686 CA * 11 20/22 CA CA CA CA CG CA CA CA CA CA GA
147721 CA * 13 24/26 CA CA CA CA CA GA CA AA CA CA CA CA CA
152756 GT * 12 22/24 GT GA GT GT GC GT GT GT GT GT GT GT
155690 CA * 12 23/24 CA CA CA CA CA CA GA CA CA CA CA CA
158623 AC * 13 24/26 AC AC AA GC AC AC AC AC AC AC AC AC AC
161060 CA * 12 22/24 CA GC CA CA CA CA CA CA CA CA CA CA
169811 CA * 12 22/24 CA AA CA CA CA CA CA CA CA CA CA CG
172454 AC * 13 24/26 AC AC TT AC AC AC AC AC AC AC AC AC AC
173433 TG * 14 26/28 TG TC TG TG TG TG TG TG TG TG TG TG TG CG
178728 TA * 15 27/30 TA TA CA TA TA TA TA TA TA TA TG TA TA TA TC
182384 TA * 12 22/24 TA TA TA TC TA TA TA AA TA TA TA TA
184997 GT * 13 24/26 GT GT GT GT GT GT GT TT GT GT GT GT GA
186076 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA TG CA
187203 CA * 17 31/34 CA CA CA CA CA CA CA CA CA CA CA CA GA CA CA CG GA
188059 GT * 11 20/22 GT AA GT GT GT GT GT GT GT GT GT
193035 TG * 17 31/34 TG TG TG AG TG TG TG TG TG TG TG TG TG TG TG TG CT
193940 TA * 11 20/22 TA TG TA TG TA TA TA TA TA TA TA
197267 TC * 11 20/22 TC CT TC TC TC TC TC TC TC TC TC
197332 CA * 10 18/20 CA CA CA CA CA CA CA TA CA GA
197992 CT * 16 29/32 CT GT CT CT CT CT CT CT CT CT CT CT CC CT CT CC
198134 CA * 11 21/22 CA CC CA CA CA CA CA CA CA CA CA
204893 CA * 23 42/46 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CT CA TA CA CA TA CA CT
205296 AC * 18 33/36 AC AC AC CA AC AC AC AC AC AC AC AC AC AC AC AC TC AC
211656 TG * 11 20/22 TG TG TG AG TG CG TG TG TG TG TG
212103 AT * 10 18/20 AT AT AT AT AT GC AT AT AT AT
215701 AT * 14 26/28 AT CT AT AT AT AT AT AT TT AT AT AT AT AT
217389 GT * 16 29/32 GT GT GT GT GT GT GT GT GT AT GT GA GT GT GT GC
217717 TA * 10 18/20 TA TA TA TA TA TA TA TG CA TA
218427 GT * 10 18/20 GT GC GA GT GT GT GT GT GT GT
218632 GT * 11 20/22 GT GT GT GT GT GT GT GT GT GT AC
219834 GT * 13 24/26 GT GT GT GT GT GC GT GT GT GT GT GA GT
220677 GT * 12 22/24 GT GA GT GA GT GT GT GT GT GT GT GT
221087 GT * 13 24/26 GT GT GT AT GT GT GT GT GT GT GT GT GA
222326 CA * 12 22/24 CA GT CA CA CA CA CA CA CA CA CA CA
223676 GT * 10 18/20 GT CT GC GT GT GT GT GT GT GT
227774 AC * 16 29/32 AC AC AC AG AC AC AC AC AC AC AC AC AC AC AC TT
231767 GA * 12 22/24 GA AA GA GA GA GA GA GA GA GA GA GG
244438 CA * 10 18/20 CA CA CA CA CT CA CA CA CA TA
254260 AC * 10 18/20 AC AC GC AC GC AC AC AC AC AC
264273 CA * 10 18/20 CA GC CA CA CA CA CA CA CA CA
268238 AT * 14 26/28 AT AA AT AT GT AT AT AT AT AT AT AT AT AT
269645 TG * 11 21/22 TG TG TG TG TG TG TG TG TG TG CG
270555 CA * 13 24/26 CA CA CA CG CA CA CA CA CA CA CA CA CG
271905 CA * 11 20/22 CA CA CA CA CA CA CA CA CT GA CA
280203 AC * 12 22/24 AC AC AC AC AC AC AC AC AT AC AA AC
282345 CA * 13 24/26 CA CA CG CA CA CA CA CA CA CA CA CA CC
282803 GT * 16 29/32 GT GT GT GT GT GT GT GT GT GT GT GT GT GC AT GC
283268 TC * 13 24/26 TC TC TC TC TC TC TC TC TC TT TC TT TC
288628 TA * 11 20/22 TA TA TA TA TG TA CA TA TA TA TA
296605 GT * 16 29/32 GT GT GT GT GT CT CT GT GT GT GT GT GT GT GG GT
303579 AG * 23 43/46 AG AG AG AT AG AG AG AT AG AG AG AG AG AG AG AG AG AG AG AG AG AT AG
-----------------------------------------------------------------------------------------
Total sequence length......................... 308307
Total number of repeats detected.............. 76
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 12 8 0 1 6 15 4 13 3 0 0 0
15 to 19 0 2 0 0 2 1 2 3 0 1 0 0
20 to 24 0 0 1 0 0 1 1 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 12 10 1 1 8 17 7 16 3 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
12 AT + 10 TA = 22
1 AG + 1 GA + 1 CT + 3 TC = 6
16 GT + 7 TG + 17 CA + 8 AC = 48
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7292942|gb|AE003494.1|AE003494 Drosophila melanogaster genomic scaffold 142000013386053 section 11 of 30, complete sequence
Position Repeat Coverage Repeat
56 GA * 14 26/28 GA GA GA GA GA GA GA GA GA GA GA TA GA GT
704 AT * 10 18/20 AT AT AT AT AT CT AG AT AT AT
1407 GT * 11 20/22 GT GT GT GT GT GT GT GA CT GT GT
1436 GT * 14 26/28 GT GT CT GT GT GT GT GT GT GT GG GT GT GT
2929 TA * 11 20/22 TA TA TA TA TA TA TT CA TA TA TA
4624 AT * 11 20/22 AT AT AC AT AT AT AT AT AT AT TT
8361 GA * 15 27/30 GA GT GA GT GA GA GA GA GA GA GA GA GA GA GT
8392 AG * 12 22/24 AG AG AG AG AG AG AG AG AG AG AG TT
10903 AG * 18 33/36 AG AG AC AG AG AG AT AG AG AG AG AG AG AG AG AG AC AG
12150 GA * 12 22/24 GA GA GC GA GA CA GA GA GA GA GA GA
12351 AT * 10 18/20 AT AT AT AT AT AT AT AT AA GT
14068 TA * 12 22/24 TA TA TA TA TA TA TA TA TA TA TT TC
14401 AT * 12 22/24 AT AT AT AC AC AT AT AT AT AT AT AT
14584 TG * 12 22/24 TG CT TG TG TG TG TG TG TG TG TG TG
17097 AC * 11 21/22 AC AC AC AC AC AC AC AC AC AC CC
19210 GA * 10 18/20 GA TA GA GA GA GA GA GA GA TA
19243 AG * 13 24/26 AG AG AG AG AC AG AT AG AG AG AG AG AG
19476 TA * 10 18/20 TA TA TA TA TA TA TA TA TT AA
19515 TA * 10 18/20 TA TA TA TA TA TA TG TA TA AA
22968 AT * 13 25/26 AT AT AT AT AT AT AT AT AC AT AT AT AT
24916 TA * 10 18/20 TA CA TA CA TA TA TA TA TA TA
26282 GA * 10 18/20 GA GT GA GA TA GA GA GA GA GA
28059 GT * 10 18/20 GT GC GT GT GT GT GT GT GT AT
29450 AC * 16 29/32 AC AC AC AC AG AC AC AC AC AC AC AC AC AC AA AA
30419 TC * 11 21/22 TC TC TC TC TC TC TC TC TG TC TC
34161 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AC TT
38786 AT * 10 18/20 AT AT AT AT AT AT AT AT TT AG
39949 CT * 16 29/32 CT CT CT CA CT CT CT TT CT CT CT CT CT CT CT TT
40153 AT * 15 27/30 AT AC AT AT AT AT AC AT AT AT AT AT AT AT AG
40420 CA * 16 29/32 CA CA CT CA CA CA CA CA GA CA CA CA CA CA CA CC
43676 TC * 16 29/32 TC TC TC TC TC TC TC TC TC TC TC TT TC TC GC TT
43869 AC * 11 20/22 AC TC AC AC AC AC GC AC AC AC AC
45801 CA * 10 18/20 CA TA CA CA CA CA CA CA CA CT
47298 TA * 11 20/22 TA TA TA TA AA TA TT TA TA TA TA
49460 TA * 12 22/24 TA TA TG TA TA TA TA TA TA TA TA TC
52778 AT * 10 18/20 AT TT AT AT AT AT AT AT GT AT
53617 CA * 20 37/40 CA AA CA CA CA AA CA CA CA CA CA CA CA CA CA CA CA CA CA CG
54264 AT * 18 33/36 AT CT AT AT AT AT AT AT AT AT GT AT AT AT GT AT AT AT
59992 GT * 12 22/24 GT GT AT GT GT GT GT GT GT GT GT GA
62677 AT * 17 31/34 AT AT AT AT AT AT AT AT GT AT AT AT AT GT AC AT AT
64552 CT * 14 26/28 CT CT CG CT CT CT CT CT CT CT CT CT CT CA
69273 TG * 23 42/46 TG TG TG CG TG CG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG AT
72739 TA * 11 20/22 TA TA CA TA TA TA TA TA TA TT TA
87773 AT * 11 20/22 AT CC AT AT AT AT AT AT AT AT AT
90452 CA * 12 22/24 CA CA CA CA CA CA CA CG CA CA GA CA
91347 AC * 10 18/20 AC AC AC AC AA AC GC AC AC AC
91595 TA * 10 18/20 TA TG TA TA TA TA TA CA TA TA
93453 TA * 10 18/20 TA CA TA TA TA TA TG TA TA TA
96700 AG * 10 18/20 AG AG AG AT AG TG AG AG AG AG
96721 GA * 10 18/20 GA GA GA GG GA GA GA GG GA GA
101129 CA * 18 33/36 CA CA CA CA CA CA CA CA CA CG CA CA CG CA CA CA CA TA
103380 TG * 10 18/20 TG TC TG TC TG TG TG TG TG TG
103433 CA * 13 24/26 CA TG CA CA CA CA CA CA CA CA CA CA CA
104790 GT * 17 31/34 GT AC GT GT GT GT GT GT GT GT GT GT GT GT GT GT GA
105375 TG * 16 30/32 TG TG TG TG TG TG TG TG TG TG TG TG TG TT GG TG
105630 AC * 11 20/22 AC AT AC AC AC AT AC AC AC AC AC
110718 TG * 17 31/34 TG TG GG CG TG TG TG TG TG TG TG TG TG TG TG TT TG
118419 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA TG CA
120323 CA * 12 23/24 CA CA CT CA CA CA CA CA CA CA CA CA
123492 GT * 18 33/36 GT AT GT GT GT GT GT GT GT GT GT GT GT GT GT GA GT GG
123690 CT * 11 20/22 CT CG CT CG CT CT CT CT CT CT CT
125834 CA * 11 20/22 CA CA CA CA CA CA CA CC CG CA CA
127072 TA * 17 31/34 TA TT TA TA TA TA TA TA CA TA TA TA TA TA TA TA TT
127601 AG * 11 21/22 AG AG AG AG AG AG AG AG AG AG TG
127701 CA * 11 20/22 CA AA CA CA CA CA CA CA CA CA CT
131784 CA * 10 19/20 CA CA CA CA CA CA CA CA CA CG
131956 GT * 11 20/22 GT GT GT GT GT GT GT TT GT GT GC
146224 TG * 17 31/34 TG TG TG TG TG TG TG TG TG TG TG TG TG TG GG AG TT
147417 GT * 11 21/22 GT GT GT GT GT GT GT GT GT GT TT
147480 CA * 10 18/20 CA GA CA CA CA CA CA CA CA TA
148944 AT * 11 21/22 AT AC AT AT AT AT AT AT AT AT AT
156290 GT * 11 20/22 GT AT CT GT GT GT GT GT GT GT GT
156516 GT * 11 20/22 GT GT GT TA GT GT GT GT GT GT GT
159507 TA * 11 20/22 TA CA TA TA TA TA TG TA TA TA TA
161340 TA * 10 18/20 TA TA TA TA TA TA TA TA TT TT
166860 CA * 15 28/30 CA TA CA AA CA CA CA CA CA CA CA CA CA CA CA
172927 GT * 11 20/22 GT GT GT GT GT GT GT GT GT CT TT
173302 CA * 10 18/20 CA CA CA CA CT CA CA CA AA CA
174859 CA * 12 22/24 CA AA CA CA CA CA CA CA CA CA CA TA
175453 GA * 12 22/24 GA GA GA GG GA GA GA GA GA GA GA GC
177712 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TG AT
178304 AT * 12 22/24 AT AT AT AT AT AT AT AT AT AC AT TT
194286 GT * 14 26/28 GT GT GT GT GT GT GT GT AT CT GT GT GT GT
197882 AT * 11 21/22 AT AT AT AT AT GT AT AT AT AT AT
201816 TG * 16 29/32 TG TG TG TG TG TG TG TG TG TG TG TG TG GA TG TC
202219 TA * 10 18/20 TA AA TA TA TA TA TA TA TA TC
204067 CA * 13 25/26 CA CA CA CA CA CA CA CA CA CA CA CA CT
204253 TG * 16 29/32 TG TG TG TA TG TG TG TG TG TG TG TG TG TG GA TG
208559 AG * 11 21/22 AG AG AG AG AG AG AG AG AG AG AT
210517 TG * 16 30/32 TG CG TG TG TC TG TG TG TG TG TG TG TG TG TG TG
211508 AC * 16 30/32 AC TC AG AC AC AC AC AC AC AC AC AC AC AC AC AC
213459 GT * 23 42/46 GT TT GT AT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT TC
221203 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AC CA
221421 TG * 15 27/30 TG TG TG GG TG TG TG TG TG TG TG TG TG TG CA
221485 CA * 12 22/24 CA CC CA TA CA CA CA CA CA CA CA CA
221790 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA CT GA
227913 AC * 17 31/34 AC AC AC AC AC AC AC AC AC AC AC AC AC AC CC CC CC
227987 TG * 10 18/20 TG TG TG TG CG TG TG TG TG CG
249569 CA * 16 29/32 CA AA CA CA CA CA CA CA CA CA CA CA CA CA AA CT
265125 AC * 17 32/34 AC AC AC AC AC AC AC AC AC AC AC AC AC AC GC AC AA
270726 AT * 10 18/20 AT AT AC AT AT AT AC AT AT AT
283199 CA * 16 29/32 CA CA CA CA CA CA CT CC CA CA CA CA CA CA CA CT
293942 AT * 10 18/20 AT AT AT AT AT AT AT AT TT TT
-----------------------------------------------------------------------------------------
Total sequence length......................... 300080
Total number of repeats detected.............. 103
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 13 13 5 6 6 14 4 10 1 2 0 0
15 to 19 3 1 1 1 4 5 7 2 1 1 0 0
20 to 24 0 0 0 0 0 1 1 1 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 16 14 6 7 10 20 12 13 2 3 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
16 AT + 14 TA = 30
6 AG + 7 GA + 3 CT + 2 TC = 18
13 GT + 12 TG + 20 CA + 10 AC = 55
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7292892|gb|AE003493.1|AE003493 Drosophila melanogaster genomic scaffold 142000013386053 section 10 of 30, complete sequence
Position Repeat Coverage Repeat
3772 AC * 11 20/22 AC AC AC AC AC AA AC AC AC AC AT
9842 TG * 12 22/24 TG TG TG TG TG TG GT TG TG TG TG TG
17701 AC * 12 23/24 AC AC AC AC AC AC AC AC AC AC AC GC
18927 GT * 11 20/22 GT GT GT GT GT GT GT GT GA GT TT
37731 AT * 11 20/22 AT AT AT AT AT AT AT AT AT CT AC
40894 AG * 10 18/20 AG GA AG AG AG AG AG AG AG AG
42063 TA * 10 18/20 TA TT TA TA TA TA TA TA TA TT
46320 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TA TC
58515 TA * 13 24/26 TA TG TA TA TA TA TA TA TA TG TA TA TA
60986 AC * 12 22/24 AC AC GC AC GC AC AC AC AC AC AC AC
62771 CA * 11 20/22 CA CA CA CA CG CA CA CA CA CT CA
69886 GA * 16 29/32 GA GG GA AA GA GA GA GA GA GA GA GA GA GA GC GA
74239 TG * 10 18/20 TG TG TG TG CT TG TG TG TG TG
77583 GT * 15 27/30 GT GT GT GT GT GT GT GT GT GT GA GT GT GG GG
81667 TC * 14 26/28 TC TC TC TC TT TC TC TC TC TC TC TT TC TC
102062 CT * 11 20/22 CT CT CT CT CT CT CT CT CT CT TC
103573 AC * 16 29/32 AC AC AC AT AC AC AC AC AC AC AC AC AC AC AA AA
103618 AC * 10 18/20 AC AC AC AC AC AC AC AC AC CA
108992 AG * 16 29/32 AG AA AT AG AG AG AG AG AG AG AG AG AG AG AG CG
114820 GT * 11 20/22 GT GT GT GT GT AT GT GT GT GT GC
120643 TA * 10 18/20 TA TA TA TG TA TG TA TA TA TA
134612 CA * 13 24/26 CA CG CA TA CA CA CA CA CA CA CA CA CA
134640 CA * 10 18/20 CA CT CA TA CA CA CA CA CA CA
144869 AG * 12 22/24 AG AG CG AG AG AG AG AG CG AG AG AG
152472 CA * 11 20/22 CA CA CA CG CA CA CA TA CA CA CA
153108 TG * 10 18/20 TG TT TG TG TG TG TG TA TG TG
166634 TG * 10 18/20 TG TG TG TG TG TG AG TG TG CG
175972 AG * 17 31/34 AG AG AT AG AC AG AG AG AG AG AG AG AG AG AA AG AG
180520 CA * 13 24/26 CA CC CA CA CA CA CA CA CA CG CA CA CA
184414 AG * 11 20/22 AG AG AG CG AG AG AG AG AG GG AG
184926 CA * 10 18/20 CA CA CA CA CA CA CA CT CC CA
190395 TA * 15 27/30 TA TA TA TA TA TA TA TG TA GA TA TA TA TA TT
190853 GT * 10 19/20 GT GT GT GT GA GT GT GT GT GT
192071 TC * 12 22/24 TC GC TC TC TC TC TC TC TA TC TC TC
206797 TC * 11 20/22 TC TC TC TC TC TC TC TC TC AC TA
207979 GT * 11 20/22 GT GT GT GT GT GT GT GT GG GT GG
210982 AT * 10 18/20 AT AT AA AT AT AT AG AT AT AT
211358 TA * 12 22/24 TA TA TA GA TA GA TA TA TA TA TA TA
221000 AT * 10 18/20 AT AT AA AT AT AT AT TT AT AT
221054 AT * 10 19/20 AT AT AT AC AT AT AT AT AT AT
222534 AT * 11 20/22 AT AT AT AT AT AT AT GT AT AT GT
222692 AT * 10 18/20 AT AT AT AT AT AT AT AT AC CT
223935 AT * 12 22/24 AT AT AT AT AT AT AT AG AT AT AT AA
228992 TG * 12 22/24 TG TG TG TA TG TG TG TG TT TG TG TG
229113 AG * 17 31/34 AG AG AG AG AG TG AC AG AG AG AG AG AG AG AG GG AG
231120 TA * 12 22/24 TA TA TA TA TA AA TA TA TA TA TT TA
232604 CA * 12 23/24 CA CA CA CA CA CA CA CA CA CA CA AA
237442 TC * 10 18/20 TC TC TC TC TC TC TC TC TG CC
237678 TA * 10 18/20 TA CA TA TA TA AA TA TA TA TA
250507 CT * 17 31/34 CT CT GT CT CT CT CT CT CT CT CT CT CT CT CT CT TA
253382 TC * 11 20/22 TC TC TC TC TC TA TC TC TC TC TA
258320 TA * 10 19/20 TA TA TA TA TA TT TA TA TA TA
263490 CA * 10 18/20 CA CA CA CA CA CA CA CA CG GA
265846 CA * 10 18/20 CA CA CA CA CA CA CA CA GA GA
266266 GT * 10 18/20 GT GT GC GT GC GT GT GT GT GT
266287 TG * 11 21/22 TG TG TG TG TG TA TG TG TG TG TG
266954 CA * 10 18/20 CA CA CT CA CA CA CA CA CA GA
286437 TA * 11 20/22 TA TG TA TA TA TA GA TA TA TA TA
288944 AC * 10 18/20 AC AC AC AC AC AT AC AC GC AC
288967 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AC GT AC
289240 AC * 11 20/22 AC AC AC AC AC AC AC AC AC TG AC
289263 CA * 22 40/44 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CG CA TG CA CG
289411 AC * 15 27/30 AC AC AC AC AC AC AC AC AC AC AC AC AT AG GC
291999 AT * 11 20/22 AT AT AT AT GT AT AT AT AT AA AT
292672 CT * 10 18/20 CT CT CT CT CT CT TT CT CT CC
295007 TA * 10 18/20 TA TA TA TA TC TA TT TA TA TA
296897 TC * 10 18/20 TC TC TC TC TG TC TC TG TC TC
304177 TG * 10 18/20 TG CG TA TG TG TG TG TG TG TG
305739 TG * 10 18/20 TG AG TG TG TG TG TG TG TG TT
305986 TA * 11 20/22 TA TA TA TA TA TG TA TA TA TA GA
306518 TG * 15 28/30 TG TG TA TG TG TG TG TG TG TG TG TG TG TG TT
306721 TG * 10 18/20 TG TG TG TG TG TG TG TG TG GA
-----------------------------------------------------------------------------------------
Total sequence length......................... 308093
Total number of repeats detected.............. 72
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 8 10 3 0 7 10 10 5 6 2 0 0
15 to 19 0 1 3 1 2 0 1 1 0 1 0 0
20 to 24 0 0 0 0 0 1 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 8 11 6 1 9 11 11 6 6 3 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
8 AT + 11 TA = 19
6 AG + 1 GA + 3 CT + 6 TC = 16
6 GT + 11 TG + 11 CA + 9 AC = 37
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7292850|gb|AE003492.1|AE003492 Drosophila melanogaster genomic scaffold 142000013386053 section 9 of 30, complete sequence
Position Repeat Coverage Repeat
1878 AT * 10 18/20 AT AT AT AT AT AT AT AG TT AT
6686 TG * 13 24/26 TG TT TG TG TG TG TA TG TG TG TG TG TG
7049 TA * 16 30/32 TA TA TA TA TA TA TA TA TA TG TA TA TA TA TA GA
7573 AT * 12 22/24 AT AT AT AT TC AT AT AT AT AT AT AT
18750 CA * 10 18/20 CA CT CA CA CA CA CG CA CA CA
20392 TC * 13 24/26 TC TC GC TC TC TC TC TC TC TC TC TC TA
21958 GT * 11 20/22 GT GT GT GT GT GT GT GT GT AT GC
23388 CA * 19 35/38 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CT TA CA CC
24930 AC * 10 18/20 AC AC AC AA AT AC AC AC AC AC
25677 TG * 11 21/22 TG TG CG TG TG TG TG TG TG TG TG
26107 CA * 10 18/20 CA CG CA CA CA CA CA CA CA CC
28097 AT * 18 33/36 AT TT AT AT AT AT AT AT AC AT AT AT AT AT AT AT AT AC
36962 TA * 13 24/26 TA TA GA TA TA TA TA TA TA TA GA TA TA
37118 AT * 13 24/26 AT AT GT AT GT AT AT AT AT AT AT AT AT
44124 GT * 10 18/20 GT GT GT GT GT GC TT GT GT GT
44156 GT * 13 24/26 GT GC GT GC GT GT GT GT GT GT GT GT GT
58435 GT * 10 18/20 GT GT GA GT GT GC GT GT GT GT
59605 TA * 15 27/30 TA TA TA TA TA TA TA TA TA TA AA TA TT TA TT
62574 GA * 12 22/24 GA GA GA GA GA AA GA GA GA GA GG GA
62601 AG * 10 18/20 AG AG AG CG AG TG AG AG AG AG
64346 AT * 25 46/50 AT AT AT AC AT AT AT AT AT AT AT GT AT AT AT AT AT AT AT AT AT TT GT AT AT
64759 GT * 10 18/20 GT GT GT GT GT GT GT GA GT TT
65370 AG * 13 25/26 AG AG AG AC AG AG AG AG AG AG AG AG AG
67794 AT * 11 20/22 AT AT AT GT AT AC AT AT AT AT AT
75365 AT * 11 20/22 AT AT AT AT GT AT AT AA AT AT AT
88048 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GA GT GG
88751 GT * 13 24/26 GT GT GT GT GT GT GT GT GA GT GA GT GT
90617 GT * 12 22/24 GT GT GT GT GT GT GA GT GA GT GT GT
90680 GT * 11 20/22 GT GT GT GT GT GT GT GT GT GC TT
95540 TA * 11 20/22 TA CC TA TA TA TA TA TA TA TA TA
96953 TG * 13 24/26 TG CG TG CG TG TG TG TG TG TG TG TG TG
97981 AT * 12 23/24 AT AT AT AT AT AT AT GT AT AT AT AT
98218 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TG TG TG TG GG CT
99337 AT * 11 20/22 AT AT AT AC AT AT AT AT TT AT AT
102931 GT * 10 18/20 GT GA GT GT GT GT GT TT GT GT
105832 CA * 16 30/32 CA CA CA CA CA CA CA CA CA CA CA CG CA CC CA CA
110987 AT * 13 24/26 AT AT AT AT AT AC AT AT AT AT AT AT GT
123803 AT * 13 24/26 AT AT AT AT AT AT AT CT AT AT AT AT GT
124391 AT * 13 24/26 AT AT AT AT AT AT AT AT AT AT AT TT TT
130265 TA * 10 18/20 TA GA TA TA TA TA AA TA TA TA
133822 AT * 11 20/22 AT AT AT AT AC AT AT AT AT AT CT
143593 AT * 10 19/20 AT AT AT AT AT AT AT AT AT AN
145515 AT * 13 24/26 AT AT AT AT AT AT AT AT AT AT GT AT CT
154324 TC * 16 29/32 TC GC TC TC TC TC TC TC TC TC TC TC TC GC TT TC
155821 CT * 12 22/24 CT CT CT CG CT CT CT CT CT CT CT AT
167828 CA * 20 36/40 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA TG CA TA CT
170664 AT * 11 20/22 AT AT AT AT AT AT AT AT AC AT AA
174716 TG * 14 26/28 TG TT TG TG TG TG TG TG TG TG TG TG TG CG
182570 TG * 10 18/20 TG TG TG TG TG TG TG TG TG GT
184147 AT * 11 21/22 AT AC AT AT AT AT AT AT AT AT AT
185724 GT * 25 45/50 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT AT GC GT GT CT GT GT GT GG GC
187096 TG * 26 47/52 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG GG TG TT GG TG CT
189935 AT * 11 20/22 AT AT AT AC AT AT AT AT AT AA AT
195184 AT * 11 20/22 AT AT AT AT AT GT AT AT GT AT AT
198240 TG * 13 24/26 TG CG TG TG TG TG TG TG TG TG TG CG TG
203965 CA * 11 21/22 CA CA CA CT CA CA CA CA CA CA CA
204763 GT * 18 33/36 GT AC GT GT GT GT GT GT GT GT GT GT GT GT GT GT GC GT
213846 GT * 19 35/38 GT GT GT GT GT GT GT GT GT GT GT GT CT GT TT GC GT GT GT
214769 TG * 12 22/24 TG TG TG CG TC TG TG TG TG TG TG TG
214998 TG * 11 20/22 TG TG TG TG TG TG CG CG TG TG TG
218471 AT * 11 20/22 AT TT AT AT GT AT AT AT AT AT AT
223471 CA * 11 20/22 CA TA CA CA CA CA CA CA CA CA CG
224028 CA * 10 18/20 CA AA AA CA CA CA CA CA CA CA
228912 CA * 12 22/24 CA CA CA CG CA CA CA CA CA CA TA CA
236527 AC * 15 27/30 AC AC AC AA AC AC AC AC AC AC AC AC AC AT AT
237466 TG * 13 24/26 TG TG TG TG TG TC TG TG TG TG TG TG TC
237731 TG * 18 33/36 TG TG TG TG CG TG TG CG TG TG TG TG TG TG TG TG TG TA
238450 CA * 15 27/30 CA CA CA CA CA CA CA CG CA CA TA CA CA CA GA
241183 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG AG TT TG
241255 TG * 15 28/30 TG TG TG TG AG TG TG TG TA TG TG TG TG TG TG
245453 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG CT
248194 CA * 17 31/34 CA AA CA AA CA CA CA CA CA CA CA CA CA CA CA CA AA
249948 CT * 22 40/44 CT CT CT CT CT CT CT CT CT CT CT CC CT CT CT AT CT CT TT CT CT CC
250010 AT * 10 18/20 AT AT AT AT AT AT AG AA AT AT
255815 CA * 13 24/26 CA CA CA CA CA CA CA CA CA TA CA CA CC
261681 TC * 11 20/22 TC TC TC TC TC TC TC TC TA TC TA
261710 CT * 11 20/22 CT CT TT CT TT CT CT CT CT CT CT
261744 TC * 16 29/32 TC TC TC CC TT TC TC TC TC TC TC TC TC TC TC TT
263106 TA * 11 20/22 TA TA TA AC TA TA TA TA TA TA TA
263703 AG * 22 40/44 AG AG AA AG AG AG AG AG AG AG AG AG AG AG AG AG AG AA AG GG AA AG
263976 TC * 16 29/32 TC CC TC TC TC TC TC TC CC TC TC TC TC TC TC TA
267964 AG * 11 20/22 AG AG AG AG AG AG AG AG AG AG CT
274917 AT * 13 24/26 AT AT AT AC AT TT AT AT AT AT AT AT AT
280065 GT * 13 25/26 GT GT GT GT GT GT GT GT GT GT GT GT GA
282656 AC * 15 28/30 AC AC AC AC AC AC AC AC AC AG AC AC AC AC AT
288681 TA * 13 24/26 TA TA TA TA TA TA AA TA TA TA TA CA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 298939
Total number of repeats detected.............. 86
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 20 5 3 1 1 7 11 11 2 2 0 0
15 to 19 1 2 0 0 2 4 3 2 3 0 0 0
20 to 24 0 0 1 0 0 1 0 0 0 1 0 0
25 to 29 1 0 0 0 0 0 1 1 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 22 7 4 1 3 12 15 14 5 3 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
22 AT + 7 TA = 29
4 AG + 1 GA + 3 CT + 5 TC = 13
14 GT + 15 TG + 12 CA + 3 AC = 44
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7292821|gb|AE003491.1|AE003491 Drosophila melanogaster genomic scaffold 142000013386053 section 8 of 30, complete sequence
Position Repeat Coverage Repeat
811 TG * 11 21/22 TG TG TG TG TG TG TG TG TG TG CG
10852 AG * 17 31/34 AG CG AG AG AG AG AG AG AG AG AG AG AG AG AG AT GG
13074 AC * 10 18/20 AC AC AC AT AC AC AC AC AC AA
14524 TA * 11 20/22 TA TA TA TA TA TA TA TA TA CA CA
21139 AT * 11 20/22 AT AT TT AT TT AT AT AT AT AT AT
22609 AC * 13 24/26 AC AC AC CC AC AC AC AC AC AC TC AC AC
23152 TA * 11 20/22 TA CA TA TA TA TA TA TC TA TA TA
27763 CA * 10 18/20 CA CA CA AA CA CA CA AA CA CA
29238 CA * 16 29/32 CA CA CA AA CA CA CA CA CA CA CA CA CA CA TA AA
39317 AC * 11 21/22 AC AC AA AC AC AC AC AC AC AC AC
48485 TA * 10 18/20 TA AA AA TA TA TA TA TA TA TA
51415 GT * 13 24/26 GT GT GT GT GT CT GC GT GT GT GT GT GT
54240 TG * 17 31/34 TG TG TG CG TG CG TG TG TG TG TG TG TG TG TG TG TT
63568 GT * 13 24/26 GT GT CT GT GT GT GT GT GT GT GT GT TT
64757 CA * 10 18/20 CA CA AA CA CG CA CA CA CA CA
65084 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA TA CC CA
65127 AC * 10 19/20 AC AC AC AC AC AC GC AC AC AC
66095 CA * 12 23/24 CA CA CA CA CA CA CA CA CA CA CA TA
68511 TG * 15 28/30 TG TG TG CG TG TG TG TG TG TG TG TG TG CG TG
73013 TG * 14 26/28 TG TG TG TG TG TG TG TG TG TG TT GG TG TG
73187 GT * 12 22/24 GT GT GT TT GT GT GT GT GC GT GT GT
73440 TG * 10 18/20 TG TG TG TG TG TG TG TG TA TC
74326 AC * 10 18/20 AC AC AC AC AC AC AC GC CC AC
83107 AT * 10 18/20 AT AT AT AC AT AT AC AT AT AT
83661 TA * 13 24/26 TA TA TA TA TA TA TA TA TA TA CG TA TA
84664 GT * 12 22/24 GT AT GC GT GT GT GT GT GT GT GT GT
96176 AC * 10 18/20 AC AC AC CC AC AC AC AC GC AC
96785 TG * 10 18/20 TG TG TA TG TG TG TG TA TG TG
97445 AC * 11 21/22 AC AC AC AC AC AC AC AC AC AC AA
101076 TG * 16 29/32 TG TG GG TG AG TG TG TG TG TG TG TG TG TG TT TG
105718 TC * 12 22/24 TC TC TC TC TC TC TC TC TC TT TC CC
107402 TG * 15 27/30 TG AG TG TG TG TG TG TG TG TG TG TG CG TG TC
108338 TC * 10 18/20 TC TC TC TC TC TC AA TC TC TC
110653 TG * 16 29/32 TG TG CC TG TG TG TG TG TG TG TG TG TG TG TG AG
111702 CA * 11 20/22 CA CA CC CA CC CA CA CA CA CA CA
111949 TC * 14 26/28 TC TC TC TC TC TC TC TC TC TC TC TC TG GC
120626 AT * 10 18/20 AT AT AT AT AC AT AT GT AT AT
121126 TG * 11 20/22 TG TC TG TT TG TG TG TG TG TG TG
121222 CA * 11 20/22 CA AA CC CA CA CA CA CA CA CA CA
128690 TA * 11 20/22 TA TA TA TC TA TA TA CA TA TA TA
128908 CA * 12 22/24 CA CT CA CA CA CA CC CA CA CA CA CA
134632 CA * 13 24/26 CA CC CA CC CA CA CA CA CA CA CA CA CA
139364 TG * 10 18/20 TG TC TG TG TA TG TG TG TG TG
143799 CT * 13 24/26 CT CT CG CT CT CT CC CT CT CT CT CT CT
144226 CA * 12 22/24 CA CA CC CA CA CA CC CA CA CA CA CA
146082 TA * 11 20/22 TA TA TA TA TA TA TA CA TA TA TG
149182 TG * 11 20/22 TG AG AG TG TG TG TG TG TG TG TG
160074 GT * 11 20/22 GT GT GC GT GT GT GT GT GT GT GC
169332 CA * 12 22/24 CA TG CA CA CA CA CA CA CA CA CA CA
178996 AT * 12 22/24 AT AT AT AC AG AT AT AT AT AT AT AT
195631 AT * 12 23/24 AT AT AA AT AT AT AT AT AT AT AT AT
201051 GT * 11 20/22 GT CT GT GC GT GT GT GT GT GT GT
201468 TG * 11 20/22 TG TG TG TG TG CG TG TG TG TC TG
207213 TA * 17 31/34 TA TA TA TA TA TA TA CA TA TA TA TT TA TA TA TC TA
209862 CT * 17 31/34 CT CT CT CG CT CT CT CT CT CT CT CT AT CT CT CC CT
211371 CA * 10 18/20 CA CA CG CA CA CA CA CA CA CT
211541 AG * 10 18/20 AG AG AG CG AG AG TG AG AG AG
216008 TC * 12 22/24 TC GC TC CC TC TC TC TC TC TC TC TC
218601 TG * 12 22/24 TG TG TG TG TG TG TT TG TG TT TG TG
254764 TA * 10 18/20 TA TA TA TA CA TA TA TG TA TA
268816 CA * 11 20/22 CA CA CA CA CA CA CA CG CA CA TA
269359 TA * 10 18/20 TA TA TA TA TT TT TA TA TA TA
273646 AT * 10 18/20 AT AT GT AT AT AC AT AT AT AT
286353 AG * 12 22/24 AG AG AG AG AG AG AA AG AG AG AG TG
286458 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG CA TG
298594 GT * 13 24/26 GT AT CT GT GT GT GT GT GT GT GT GT GT
303981 CT * 13 24/26 CT CT CT CA CT GT CT CT CT CT CT CT CT
314148 TG * 11 20/22 TG TG TG TG TG TG TG TG TG CG GG
317916 CT * 11 20/22 CT CT CT CT GT CT CT CT TT CT CT
321383 AT * 10 18/20 AT AT AT AT AA AC AT AT AT AT
323190 AC * 14 26/28 AC AC GC AC GC AC AC AC AC AC AC AC AC AC
-----------------------------------------------------------------------------------------
Total sequence length......................... 323489
Total number of repeats detected.............. 71
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 7 8 2 0 8 12 11 7 4 3 0 0
15 to 19 0 1 1 0 0 1 5 0 0 1 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 7 9 3 0 8 13 16 7 4 4 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
7 AT + 9 TA = 16
3 AG + 0 GA + 4 CT + 4 TC = 11
7 GT + 16 TG + 13 CA + 8 AC = 44
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7292788|gb|AE003490.1|AE003490 Drosophila melanogaster genomic scaffold 142000013386053 section 7 of 30, complete sequence
Position Repeat Coverage Repeat
2151 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AC AG AG
2327 AC * 12 22/24 AC GC AC AA AC AC AC AC AC AC AC AC
2423 TG * 11 20/22 TG CG TG CG TG TG TG TG TG TG TG
8676 GT * 10 18/20 GT GT GT TT CT GT GT GT GT GT
9036 TG * 10 18/20 TG TA TG TG TG TA TG TG TG TG
9408 GT * 11 20/22 GT GT GT GT GT GT GT GT AC GT GT
10196 AC * 11 20/22 AC AG AC AC AC AT AC AC AC AC AC
16803 CT * 23 42/46 CT CG CT CT CT CT CT CT CT CT TT CT CT CT CT CT CT CT CT CT GT CT GT
17286 AT * 10 18/20 AT CT AT AT AT AT AT AT AT TT
18334 CT * 12 22/24 CT CT CT CT CT CT CT CT CT GC CT CT
18650 TG * 10 18/20 TG TG CG TG TG TG TG TT TG TG
23070 TC * 12 22/24 TC TC TC TC TC TC TC TC TC TT TC TG
24335 TC * 13 24/26 TC TC TC TG TC TC TC TC TC TC TC TG TC
24364 CT * 10 18/20 CT CT CT AT CT AT CT CT CT CT
24405 TC * 10 18/20 TC TC TC TA TC TC TC TC TC CC
25334 CA * 10 18/20 CA CA CA CA CA CG AA CA CA CA
25651 GT * 11 20/22 GT GT GT AT GT GT GT GT GC GT GT
25734 TA * 10 18/20 TA TA TA TA TA TA TA TA CA TT
25838 CT * 18 33/36 CT CT CT AT TT CT CT CT CT CT CT CT CT CT CT CT GT CT
26816 CT * 11 20/22 CT CT CT CT CT CT CT AT CT AT CT
30295 GT * 10 18/20 GT GT GT GT GT GT AT AT GT GT
30429 TG * 10 18/20 TG AG TG TG TG TG TG TG TG TA
32803 AC * 11 20/22 AC AC AC CC AC AC AC AC AC AT AC
33021 TA * 12 22/24 TA TA TA TA TA TG TA TA TG TA TA TA
33720 TA * 11 20/22 TA TA TT CA TA TA TA TA TA TA TA
41937 AT * 10 18/20 AT AC AT AT AT AT GT AT AT AT
49256 AT * 11 20/22 AT AT AT AT CT AT AT AT AT AT AA
49842 CT * 15 27/30 CT CT CT CT CT CT CT CT CT CT CT CT GT CT AG
53011 GT * 12 22/24 GT CT AT GT GT GT GT GT GT GT GT GT
53382 GT * 13 24/26 GT GT GC CT GT GT GT GT GT GT GT GT GT
55953 TA * 12 22/24 TA TA TA TA TA TA TA GA TA TG TA TA
56612 AC * 11 20/22 AC AC AC TC AG AC AC AC AC AC AC
56636 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AC AT AT
60954 AT * 11 20/22 AT AT AT AT AT AT AT AT AT TT TT
61016 AT * 16 29/32 AT TT AT AT AT AT AT AT GT AT AT AT AT AT AT TT
61763 AT * 11 20/22 AT AT AT AT AT AT AT CT AT AT TT
71999 AC * 10 18/20 AC AC AC AC AC AC AC AC AT AA
72227 TA * 12 22/24 TA TA TA TA TC TA TA TA TA TA TA TT
72757 AG * 13 24/26 AG AG AG AG AG AG AG AG AG AG AT GG AG
73179 TG * 17 31/34 TG AG TG TG TG TG TG TG TG CG TG TG TG TG TG TG GG
75148 TG * 11 21/22 TG TG TG TG TG TG TG TG TG TA TG
75603 CA * 10 19/20 CA CA CA CA CA CA CA TA CA CA
78952 GT * 11 21/22 GT AT GT GT GT GT GT GT GT GT GT
78994 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG AG CG
79139 GT * 16 30/32 GT GT GT GT GT GT GT GT CT GT GT GT GA GT GT GT
79197 GT * 10 18/20 GT GT GT GT GT GA GT GT GA GT
79302 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC AC AC CG
79329 AC * 11 20/22 AC AC AC AC AC AC GC AC GC AC AC
80470 TG * 16 29/32 TG TG TG TG TG TG TG TG TG TG TG TG TG CG GT TG
80970 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AT AG
81052 AC * 12 22/24 AC GC AC AC AC AC AC AC AC AC AC AG
81154 AC * 10 18/20 AC AC AC AC AC AC AC GC AC AA
84579 CA * 10 19/20 CA CA CA CA CA CA CA CA CA GA
85506 TA * 13 24/26 TA TA TA TA CA TA CA TA TA TA TA TA TA
92821 CA * 14 26/28 CA CA AA CA AA CA CA CA CA CA CA CA CA CA
95547 TG * 10 18/20 TG TG TG TG TG TG TG TG CG GG
96146 GA * 16 29/32 GA GA GA TC GA GA GA GA GA GA GA GA GA GA AA GA
97166 CA * 16 29/32 CA CA CA CA CA CA CA CA CA CA CG CA CA CA CC TA
99553 TG * 28 51/56 TG TG TG CG CG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TA AA
99798 TA * 15 27/30 TA TA TA TG TA TA TA TA TA TA TT TA TA TA GA
103982 TG * 10 18/20 TG AG TG TG TG TG AG TG TG TG
104066 GT * 15 27/30 GT GT GT GT AT GT GT GT GT GT GT GT GT GG AT
108042 TG * 12 23/24 TG TG TA TG TG TG TG TG TG TG TG TG
108184 TC * 11 20/22 TC TC TC TC TC TC TC TT TC GC TC
113134 GT * 10 18/20 GT GT GT GT GT GT GT GT GC AT
124866 GT * 10 18/20 GT AT GC GT GT GT GT GT GT GT
125066 GT * 15 27/30 GT GT GT GC GT GT GT GT GT GT GT GT TT GT GG
127838 AG * 11 20/22 AG AG AG AG CG AG AG AG GG AG AG
128526 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG GA TG
129799 CT * 11 20/22 CT CT CT CA CT CA CT CT CT CT CT
136315 CT * 12 22/24 CT CT CG CT CT CT AT CT CT CT CT CT
136536 TG * 10 18/20 TG CG TG TG GG TG TG TG TG TG
141481 GT * 11 20/22 GT GT TT TT GT GT GT GT GT GT GT
146466 CA * 10 19/20 CA AA CA CA CA CA CA CA CA CA
150850 TA * 18 33/36 TA TA TA TA TT TA TA TA TA TA TA TA TA TC TG TA TA TA
151866 TA * 10 18/20 TA TA TA TA TA TA TA TA TT TC
155112 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TA TA
156038 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AG GT
157154 AT * 13 24/26 AT AT AT AT AT AT AC AT AT AT AT TT AT
159812 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TT TT TG
160012 CA * 13 24/26 CA CA CA CA CA CA CA CA CC CA CA TA CA
160147 AC * 13 24/26 AC AC AC AC TC AT AC AC AC AC AC AC AC
161477 TG * 17 31/34 TG TG TG TG TG TG TG TG TG TG AG TG TG TC CG TG TG
163618 GT * 10 18/20 GT GT GT CT GT GT GT GT GT GC
165928 GT * 12 22/24 GT CT GT GT GT GT GT GT GA GT GT GT
166979 AT * 12 22/24 AT AG AT GT AT AT AT AT AT AT AT AT
181221 GT * 16 29/32 GT GT AT GT GT GT GT GT GT GT GT GT GT GT GG CT
185080 CA * 11 20/22 CA CG CA CG CA CA CA CA CA CA CA
187314 TG * 15 27/30 TG TC TG TG TG TG TG TG TG TG TG TT TG TG TC
193427 TA * 17 32/34 TA TA CA TA TA TA TA CA TA TA TA TA TA TA TA TA TA
194023 AC * 11 20/22 AC AT AC AC AC AC AC AG AC AC AC
194252 GT * 11 20/22 GT GT GT GT GT GT GT GT GT GC GA
196102 AC * 12 23/24 AC AC AC AC AC AC AC AC AC AA AC AC
196276 AC * 10 18/20 AC AC AA AC AC GC AC AC AC AC
196987 TA * 11 20/22 TA TA TA TA TA TG TA TA TA TG TA
197759 GT * 10 18/20 GT GT GT GT GT GT GA GT GT GC
198027 AC * 11 20/22 AC AC AT GC AC AC AC AC AC AC AC
201055 CA * 10 18/20 CA CA CA CA CT CA CA CA CA CT
204287 CA * 14 26/28 CA GA CA CA CA CA CA CA CA CA CA CA GA CA
212308 TG * 11 21/22 TG TG TG TG TG TG TG TG TT TG TG
212863 GT * 17 32/34 GT GT GT GT GT GT GT GT GT GT GT GT GC GT GT GT TT
213054 GT * 16 29/32 GT GT AT GT GT GT GT GT GT GT GT GT GT GT TG GT
213917 AG * 13 24/26 AG AG AG AG AG AG AG AT AG AG AG AG AA
214102 TG * 13 24/26 TG TG TG TC TG TG TG TG TG TG TG TG TC
214524 GT * 12 22/24 GT GT GT CT GC GT GT GT GT GT GT GT
215911 AC * 20 37/40 AC AC GC AC AC AC AC AC AC AC AC AC AC AC AC AC TC GC AC AC
216780 TG * 11 20/22 TG GT TG TG TG TG TG TG TG TG TG
217170 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC AC AC CT
217921 CA * 12 22/24 CA CA CA AA CA CA CA CA CA CA CA CG
222510 AC * 13 24/26 AC TC AC AC AC AC AC AC AC AC AT AC AC
224117 TG * 11 20/22 TG TG TG TG TC TG TG TG TG TG CG
225163 TG * 10 18/20 TG CG TG TG TA TG TG TG TG TG
229841 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CA TG
234240 TG * 12 22/24 TG TG TC TA TG TG TG TG TG TG TG TG
236316 CT * 10 18/20 CT CC CT CT CT CT CT CT CT GT
237759 GT * 13 24/26 GT GT GT CT GT GT GT GA GT GT GT GT GT
239627 CA * 15 27/30 CA CA TA CA CA CA CA CA CA CA CA CA CA CT TA
239686 TG * 10 18/20 TG TA TG TG TT TG TG TG TG TG
242475 GT * 13 24/26 GT GT GT GT GT GT GT TT GT GT GT GT GA
251734 AT * 10 18/20 AT AT AT GT AC AT AT AT AT AT
253313 TC * 17 32/34 TC TC TC CC TC TC TC TC TC TC TC TC TC TC TC TC TA
253657 AC * 10 18/20 AC AC AC AC TC AC AC AC AC TC
255762 CA * 16 30/32 CA CA CA CA CA CA CA CC CA CA CA CA CA CA AA CA
257044 TG * 12 22/24 TG CA TG TG TG TG TG TG TG TG TG TG
258560 TG * 10 19/20 TG TG TG TG TG TG TT TG TG TG
259163 CA * 12 22/24 CA CA CT TA CA CA CA CA CA CA CA CA
259598 CA * 12 22/24 CA CA CA CA CA CA CA CA CA TA TA CA
262499 GT * 11 20/22 GT GT GT GT GT GT GT GT GT GA TT
263737 CA * 14 26/28 CA CA CA CA CA CG CA CA CA CA CA CA TA CA
265013 CA * 16 29/32 CA CA CA CA CA CG CA CA CA CA GA CA CA CA CA CT
271480 AT * 11 20/22 AT AT AT AT AT AT AT GT AT AT GT
272405 CA * 11 20/22 CA CA CA CA CA CA CA CA CC CA CT
274464 TG * 10 18/20 TG TG TG TG TG TG TG TG TT AG
278850 TG * 11 20/22 TG CG TG TG TG TG TG TG TG TG TA
279064 CA * 10 18/20 CA CA CG CA CA CG CA CA CA CA
281251 AC * 18 33/36 AC AC AC AC AC GC AC AG AC AC AC AC AC AC AC AC AC AG
283891 AC * 13 25/26 AC AC AC AC AC AC AC AC AC AC AC AC AA
291715 AT * 10 18/20 AT AC AT GT AT AT AT AT AT AT
292430 TC * 18 33/36 TC CC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TT AC
293657 TG * 10 19/20 TG TG TG TG AG TG TG TG TG TG
294705 AT * 12 22/24 AT AT AT AT AT AT AT AT AC GT AT AT
296754 TC * 13 24/26 TC TC CA TC TC TC TC TC TC TC TC TC TC
298002 TC * 11 20/22 TC TC TC TC TC TC TC TC TC TC CT
301223 AC * 11 20/22 AC AC AC AC AC AC AC AC TC GC AC
301421 CA * 10 18/20 CA CA CA CA CA CA CA TG CA CA
301591 AG * 15 27/30 AG AG AG AG TG AG AG AG AG AG GG AG AG AG AA
302067 GT * 10 18/20 GT GT GT GT GC GT GT GT GT GA
302087 GA * 11 20/22 GA GA GA GA GA GA GA GA GA GG GC
-----------------------------------------------------------------------------------------
Total sequence length......................... 302752
Total number of repeats detected.............. 148
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 12 8 3 1 22 17 25 20 6 6 0 0
15 to 19 1 3 1 1 1 4 4 6 2 2 0 0
20 to 24 0 0 0 0 1 0 0 0 0 1 0 0
25 to 29 0 0 0 0 0 0 1 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 13 11 4 2 24 21 30 26 8 9 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
13 AT + 11 TA = 24
4 AG + 2 GA + 9 CT + 8 TC = 23
26 GT + 30 TG + 21 CA + 24 AC = 101
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7292759|gb|AE003489.1|AE003489 Drosophila melanogaster genomic scaffold 142000013386053 section 6 of 30, complete sequence
Position Repeat Coverage Repeat
3705 AC * 12 22/24 AC AC AA AC AC AC AC AT AC AC AC AC
4449 TG * 14 26/28 TG AG TG TG TG TG TG TG TG TG TG TG TG TA
4629 CA * 11 20/22 CA CC CA CG CA CA CA CA CA CA CA
10737 TA * 12 22/24 TA TA TT TA TA CA TA TA TA TA TA TA
11106 AT * 12 22/24 AT AT AT AT AT AT AT GT AT AT AT AA
11756 AC * 10 18/20 AC AC AC AC AC AC AC AC AT AT
18271 CA * 18 33/36 CA CA CA CA CA CG CA CA CA CA CA CA CA CA CA GA CA TA
20663 TG * 14 26/28 TG TA TG TG TG TG TG TG TG TG TG TG GG TG
21467 TG * 11 20/22 TG TG TG AG TG TG TG CG TG TG TG
22072 CT * 11 20/22 CT CT CT CT CT CT TT CT CT TT CT
23079 CA * 13 24/26 CA CA CA GA CA CA CA CA CA CA CT CA CA
26283 TA * 10 18/20 TA TG TA AA TA TA TA TA TA TA
27164 CA * 11 20/22 CA CA CA CA CA CA CA CA CA GG CA
32902 TG * 12 23/24 TG TG TC TG TG TG TG TG TG TG TG TG
35949 CA * 10 18/20 CA CA CA CA CA CG CA CA CA CT
44612 TG * 16 29/32 TG TG TG TG TG TG TG TA TG TG TG TG TG TC TA TG
44982 CA * 16 29/32 CA CC CG CA CA CA CA CA CA CA CA CA CA CA CA GA
60531 GT * 10 18/20 GT GT GT GC GT GT GT GT GT GA
74374 CT * 12 22/24 CT CT CC CT CT CT CT CT CT CT CT CG
74445 GT * 14 26/28 GT GT GT GT GT GT GT GT GT GT TT GT TT GT
75418 AT * 10 18/20 AT AT AC AT AT AT AT AT AT AA
77560 AC * 11 20/22 AC AC AC AC AC AC AC AA AC AC AT
77716 CA * 15 27/30 CA CA CA CT CG CA CA CA CA CA CA CA CA CA CT
78463 CA * 10 18/20 CA CA CA CA CA CA CA CA CA TG
79011 AT * 15 27/30 AT AT AT AT GT AT AT AT AT TT AT AT AT AT AC
102958 GT * 10 18/20 GT GT GT GT GC GT GT GT GT GA
104364 AC * 10 18/20 AC AC AC AC AC AC AC AC AC TG
108897 GT * 12 22/24 GT GG GG GT GT GT GT GT GT GT GT GT
111020 CT * 11 20/22 CT CT CT CG AT CT CT CT CT CT CT
111899 TA * 10 19/20 TA TA TA TA TA TA TA TA TG TA
111921 TA * 11 20/22 TA TA TA TA TA TA AA TA TA TA AA
112181 TG * 17 31/34 TG TG CG TG TA TG TG TG TG TG TG TG TG TG TG TG TT
112794 AT * 10 18/20 AT AT AT AT AT AT AC AT AT TT
118973 AT * 10 19/20 AT AT AT AT AT AT AT AT AT AC
120539 GT * 15 27/30 GT AT GT GT GT GT GT GT GT GT GC GT GT GT GC
137433 TA * 11 20/22 TA TC TA TA TA TC TA TA TA TA TA
139397 GT * 14 26/28 GT AT GG GT GT GT GT GT GT GT GT GT GT GT
143113 GT * 10 18/20 GT GT TT GT GT GT GT GT GT GG
143139 TA * 11 20/22 TA TA TA TA TA TA TA AA GA TA TA
146299 GT * 10 18/20 GT GT GT CT GT GT GT GT GT GC
149581 AG * 10 18/20 AG TG AG AG AG AG AA AG AG AG
156102 TA * 12 22/24 TA TA TA TG TT TA TA TA TA TA TA TA
156863 AT * 13 24/26 AT AT AT AC AT AT AT AT AT AT AT AT AG
162140 TC * 17 31/34 TC TC TC TC TC TC TC TC TC TG TC TC TG TC TC GC TC
162474 GA * 22 40/44 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA TG TA GG
168071 AC * 10 18/20 AC AC GC AC AC AC AC AC AC AA
184234 TA * 11 20/22 TA TC TA TA TA TA TA TA TA TA TT
196418 AT * 15 27/30 AT AT AT AT AT AT GG AT AT AT AT AT AT AT AN
196950 GT * 13 24/26 GT GT TT GT GT GT GT GT GT GT GT GT GC
205343 AT * 10 18/20 AT AT AT AT AT AT AT AT AT GC
206077 AC * 12 22/24 AC AC AA AC AC AC AC AC AC AC GC AC
209057 TA * 11 20/22 TA TA AA TA TA TA TA TA TA TA AA
209942 TA * 11 20/22 TA TA TA TA TA TA TA TA AA TA TT
215232 TA * 10 18/20 TA TA TA TA AA AA TA TA TA TA
217943 CA * 10 18/20 CA AA CA CA CA CA CA CA CA CG
225726 CT * 10 18/20 CT CT CT TT CT CT CT CC CT CT
230161 TA * 11 20/22 TA TA TA TA TA TA TA TA TA TT TT
236900 AT * 11 21/22 AT AT AT GT AT AT AT AT AT AT AT
249617 TA * 13 24/26 TA TA TA TA TA TA TA TA TA TA TA GC TA
249873 AT * 10 18/20 AT AT AT GT AT AT AT TT AT AT
252675 AG * 12 22/24 AG AG AG AG AG AG AG AG AG AG AG CA
258775 TG * 12 22/24 TG TG TG CG TA TG TG TG TG TG TG TG
263701 GT * 10 18/20 GT GT GT GT GT GT TT GT AT GT
270565 CA * 15 27/30 CA CA CA CA CA CA CA CA CA CA CA CA TG CA CG
287799 CA * 15 28/30 CA CA CA CA CA CA CA CG CA CA CA CA CA CA CT
288049 TG * 12 22/24 TG TG TG CG TG TG TG TG TT TG TG TG
288568 TA * 10 18/20 TA TA TA TA TA TA TA AA TG TA
295028 TG * 11 20/22 TG TG TG TG TG TG TG TG TG AG GG
302244 TA * 10 19/20 TA TA TA TA TA TA TA TA AA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 302915
Total number of repeats detected.............. 69
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 8 15 2 0 6 6 7 9 0 4 0 0
15 to 19 2 0 0 0 0 5 2 1 1 0 0 0
20 to 24 0 0 0 1 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 10 15 2 1 6 11 9 10 1 4 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
10 AT + 15 TA = 25
2 AG + 1 GA + 4 CT + 1 TC = 8
10 GT + 9 TG + 11 CA + 6 AC = 36
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7292734|gb|AE003488.1|AE003488 Drosophila melanogaster genomic scaffold 142000013386053 section 5 of 30, complete sequence
Position Repeat Coverage Repeat
2214 CA * 10 18/20 CA TA CC CA CA CA CA CA CA CA
5972 AT * 12 22/24 AT AT AT GC AT AT AT AT AT AT AT AT
6814 TG * 17 31/34 TG TG TG TG TA TG TG TG TG TG TG TG TG TG TG TG CC
10858 AT * 21 38/42 AT AC AT AT AT AT AA AT AT AT AT AT AT AT AT AT GT AT AT GT AT
22138 TG * 25 46/50 TG TG TG AG TG TG AG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG CA
29151 CA * 10 18/20 CA CA CA CC CA CT CA CA CA CA
30776 TG * 11 20/22 TG TG TG TG TG TG TG TG TA TG TT
35321 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TG CC
48219 AT * 12 22/24 AT AT AT AT AC AT AT AT AT AT AG AT
48603 TA * 13 24/26 TA TA TA AA TA TA TA TA TG TA TA TA TA
55517 TA * 12 22/24 TA TA TA GA TA TA TA TT TA TA TA TA
56751 CA * 17 32/34 CA CA CA CA CA CA CA CA AA CA CA CA CA CA CA CT CA
58772 TG * 10 18/20 TG TA TG TG TG TG TG TG AG TG
59267 AG * 13 24/26 AG AC AC AG AG AG AG AG AG AG AG AG AG
59930 GT * 10 18/20 GT AT GT GT GT GT GT GT GT GC
60786 TG * 15 28/30 TG TG TG TG TG CG TG TG TG TG TG TG AG TG TG
66279 TG * 11 20/22 TG TG TG TG TG TG TG TG TG CG AG
69392 AT * 11 20/22 AT AT CT AC AT AT AT AT AT AT AT
70911 AT * 10 18/20 AT AT AT AT AT AT AT AT AT NN
72656 CA * 14 26/28 CA CA CA CA CA CA CA CT CT CA CA CA CA CA
73101 AG * 37 67/74 AG CG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG TG AT GG GG CG AC AG
77047 AC * 18 33/36 AC CT AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC GC
79368 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AC TC AA
79528 TG * 14 26/28 TG TG TT TG TG TG TG TG TG TG TG TG CG TG
79581 TG * 17 31/34 TG AG TG TG TG TG TG TG TG TG TG TG TG TG TG TT GG
80194 CA * 10 18/20 CA CA CA CG CA CT CA CA CA CA
83592 TG * 11 21/22 TG TG TG TG TG TG TG TG TG TG AG
84290 TG * 10 19/20 TG TG TG TG TG TG TG TG TG CG
87328 CA * 12 22/24 CA CA CA CA GA CA CA TA CA CA CA CA
98074 CA * 11 20/22 CA CA CA CA AA CA CA CA CA TA CA
98718 CA * 10 18/20 CA CT CA CA CA CA CA CA CA CT
101977 TG * 25 45/50 TG TG TG TG TG CG TG TG TG TG TG CG TG TG CG TG TG TG TG TG TG TG TG AG CG
103928 TG * 12 22/24 TG TG GC TG TG TG TG TG TG TG TG TG
104169 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AA CC
105354 AC * 13 24/26 AC AC AC TA AC AC AC AC AC AC AC AC AC
106085 CA * 13 25/26 CA CA CA CA CA CA CA CA CA CA CA CA CT
112486 TG * 11 20/22 TG AA TG TG TG TG TG TG TG TG TG
114989 AT * 10 18/20 AT AT AT AT AT AT AT TT AT AC
115753 TA * 15 27/30 TA TA TA TA TA TA TA TA TG TA TG TA TA TA TC
117753 AC * 10 18/20 AC AC AC AC AA CC AC AC AC AC
119507 TG * 17 31/34 TG TG TG TG TG TG TG TG TG TT TG TG TG TG TG CG TT
121860 TG * 16 29/32 TG TG TG TG TG TG TG TG TG TG TG TG TG AT TG GG
123798 GA * 10 18/20 GA GA GA GA AA GG GA GA GA GA
125773 CA * 17 31/34 CA CA CA CA CA CA CA CA CA CA CA CG CA CA CA CT CG
127122 GA * 14 26/28 GA GA GA GA GA GA GA GA GA GA GA GC GA AA
130018 CA * 16 29/32 CA TA CA CA CA CA CA CA CA CA CA CG CA CA CA TA
130556 TG * 17 31/34 TG GC TG TG TG TG TG TG TG TG TG TG TG TG TG TG CG
130640 TG * 13 24/26 TG TG TG TG TG TG TG CG TG TG TG GG TG
131079 CA * 11 20/22 CA CA CA CA CA CC CA CA CA CA CT
132032 TG * 13 24/26 TG TA TG TG TG TG TG TG TG TG TG GG TG
133332 AT * 15 27/30 AT AC AT AT AT GT AT AT AT AT AT AT AT AT TT
137976 AT * 10 19/20 AT AT AT AT AT GT AT AT AT AT
143260 TG * 15 27/30 TG TG TG TC TG TG TG TG TG TG CG TG TG TG TT
143292 TG * 10 18/20 TG TG TG TG TG TG TG TG TT TA
143457 TG * 12 22/24 TG TG AG TG TG CG TG TG TG TG TG TG
148417 GT * 10 18/20 GT GT GC GT GT GT GT GT GT GC
149578 CA * 12 22/24 CA TA TA CA CA CA CA CA CA CA CA CA
156055 TG * 10 19/20 TG CG TG TG TG TG TG TG TG TG
156098 GT * 10 18/20 GT GT GT GT TT GT GT GT GT GC
156170 TG * 11 21/22 TG TA TG TG TG TG TG TG TG TG TG
156264 TG * 11 20/22 TG TG TG TG TG AG TG TG TG TG GG
156454 GT * 17 31/34 GT GT GT GT GT GT GT TT GT GA GT GT GT GT GT TT GT
161322 TG * 12 22/24 TG TG CG TG TG TG TG TG TG TG TT TG
162763 TG * 13 25/26 TG GG TG TG TG TG TG TG TG TG TG TG TG
166766 TG * 18 33/36 TG TG TG TG TG TG TG TG TG TG TG TG TG TG GC TG AG TG
168083 TG * 15 28/30 TG TG TG TG AG TG TG TG TG TG TG TG TG TG TA
171950 TA * 13 24/26 TA TT TA TA TA TT TA TA TA TA TA TA TA
180802 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TC TG TC
181980 AT * 16 29/32 AT AT AT GT AT AT AT AT AT AT GT AT AT AT AT TT
191483 AT * 15 27/30 AT AA AT AT AT AT AT AT AT AC AT AT AT AT TT
192756 TA * 12 23/24 TA TA TA CA TA TA TA TA TA TA TA TA
195204 AC * 11 20/22 AC AC AC AC AC AC AT AG AC AC AC
196459 AT * 13 24/26 AT AT AT AT TT AT AT AT AA AT AT AT AT
197314 TA * 11 20/22 TA CA TA TA TA TG TA TA TA TA TA
200683 TA * 14 26/28 TA TA TA CA TA TA TA TA TA TA TA TA TA AA
201030 CA * 15 27/30 CA CA CA CA AA CA CA CA CA CA CA CA CA CA GC
206302 TG * 11 20/22 TG GG TG CG TG TG TG TG TG TG TG
208140 AT * 10 18/20 AT AT AT AT AC AT AT AT AT GT
213915 CA * 11 20/22 CA CA CA CA CA CA CA CA CT CG CA
214118 AT * 10 18/20 AT AT AT AT AT AT AT GC AT AT
214139 TA * 10 18/20 TA TA TG TA TA TA TA TA TA AA
220031 GT * 10 19/20 GT GT GT GT GT GT GT GT GT GG
221563 TG * 12 23/24 TG TG TG TG TG TG TG TG TG TG AG TG
222547 TA * 10 18/20 TA TA TA TA TA TA TA TA TT TT
227793 AC * 20 36/40 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC TC AT AA AT
232240 TG * 12 22/24 TG TG AG CG TG TG TG TG TG TG TG TG
233745 TA * 11 20/22 TA TA CA TA TA TA TA TA TA GA TA
233992 CA * 10 18/20 CA CA CA CC CA CA CA CC CA CA
236539 CA * 16 30/32 CA CG CA CA CA CA CA CA CA CA CA TA CA CA CA CA
236773 CA * 11 20/22 CA AA CA CA CA CA CA CG CA CA CA
237628 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TA TT
240632 TG * 11 20/22 TG TG AG TG TG TG TG CG TG TG TG
241000 AC * 18 33/36 AC AC AC AA AC AC AC AC CC AC AC AC AC AC AC AC AC AT
241744 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AC AG GC
246057 AT * 10 18/20 AT GT AT AT AG AT AT AT AT AT
247272 TG * 13 24/26 TG TG TG TG TG TG TG AG TG TG TG CG TG
250766 GT * 10 18/20 GT GT AT TT GT GT GT GT GT GT
252082 TG * 10 18/20 TG TG CG GG TG TG TG TG TG TG
252768 AT * 13 24/26 AT TT AT AT AT AT AT AT AT AT GT AT AT
253102 CA * 13 24/26 CA CA CA CA CA CG CA CA CA CA CA TA CA
259099 CA * 16 29/32 CA CA CA CA CA CA CA CA CA CA CA CG CA CA CA AG
261853 TG * 15 28/30 TG TG TG TG TG TG TG TG TG TG TT TG TC TG TG
261912 GT * 11 20/22 GT GC GT GG GT GT GT GT GT GT GT
265141 CA * 13 24/26 CA GG CA CA CA CA CA CA CA CA CA CA CA
270980 AT * 12 22/24 AT AT AT AT AT AT AT AC AT AT AC AT
273146 TC * 12 22/24 TC CC TC TC TC TC TC GC TC TC TC TC
281647 AT * 11 20/22 AT AT AT AT AT AT AT AG AT AA AT
282487 CA * 10 18/20 CA AT CA CA CA CA CA CA CA CA
287731 TG * 21 38/42 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG CA CT
290537 GT * 13 25/26 GT GT GT GT GT GT GT GT GT GT GT GT GG
291968 AT * 16 30/32 AT AT AT AT AT AT AT AT AT AC AT GT AT AT AT AT
294565 TC * 12 22/24 TC CG TC TC TC TC TC TC TC TC TC TC
294674 TA * 12 22/24 TA TA CA TA TA TA TA TA TT TA TA TA
296095 TG * 15 28/30 TG TG TG TG TG TG TG TG TG TG TG TG TG TT GG
296255 CA * 11 20/22 CA CA CA CA CA CA GG CA CA CA CA
296423 TG * 13 24/26 TG TG TG TG AC TG TG TG TG TG TG TG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 302797
Total number of repeats detected.............. 116
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 13 10 1 2 6 17 27 7 2 0 0 0
15 to 19 4 1 0 0 2 6 11 1 0 0 0 0
20 to 24 1 0 0 0 1 0 1 0 0 0 0 0
25 to 29 0 0 0 0 0 0 2 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 1 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 18 11 2 2 9 23 41 8 2 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
18 AT + 11 TA = 29
2 AG + 2 GA + 0 CT + 2 TC = 6
8 GT + 41 TG + 23 CA + 9 AC = 81
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7292680|gb|AE003487.1|AE003487 Drosophila melanogaster genomic scaffold 142000013386053 section 4 of 30, complete sequence
Position Repeat Coverage Repeat
6716 GA * 11 20/22 GA GT GA GA GA GA TA GA GA GA GA
7359 TA * 21 38/42 TA TA TA TA TA TA TA TA TA TG TG TA TA TA TA TA TA TA TA TA AT
21010 TC * 12 22/24 TC AC TT TC TC TC TC TC TC TC TC TC
21173 AT * 10 18/20 AT AT AT GT AT AT AT GT AT AT
26179 CA * 16 29/32 CA TA CA CA CA CA CA CA CA CA CA CA CA CA AA GA
36895 GT * 18 33/36 GT GT GC TT GT GT GT GT GT GT GT GT GT GT GT GC GT GT
46525 AT * 10 18/20 AT AC AT AC AT AT AT AT AT AT
47535 AT * 13 24/26 AT GT AT AT AT AT AT AT AT AT GT AT AT
52129 TA * 12 22/24 TA TT TA TA TA TA AA TA TA TA TA TA
52318 CA * 12 22/24 CA CT CT CA CA CA CA CA CA CA CA CA
56832 AT * 11 20/22 AT AA AT AT AT AT AT TT AT AT AT
62691 AC * 10 18/20 AC TC AC AC AC AC AC AC AC AA
69060 AT * 12 22/24 AT AT AT AT AT GT AC AT AT AT AT AT
76739 GT * 14 26/28 GT GT GT GT GT GT GT GT GT GC GT GT GT GC
79517 GA * 13 24/26 GA GA GA GA GA GA GA GA GA GA GT TA GA
80106 AC * 12 22/24 AC AC AT AC AC AC CC AC AC AC AC AC
83517 AC * 11 20/22 AC AT AC AG AC AC AC AC AC AC AC
84334 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AG AC AT
97783 TA * 15 27/30 TA TA TA TA TA TA TA TA CA TA TA TA TA TT AA
98643 GT * 11 20/22 GT GC GG GT GT GT GT GT GT GT GT
99552 AC * 12 23/24 AC AC AC AC AC AC AC AC TC AC AC AC
100425 AT * 12 22/24 AT AT AT AC AT AT AT AT AT AT AT AA
106668 GA * 10 18/20 GA GA GA GA GA CA AA GA GA GA
111025 TG * 11 20/22 TG TG TG TG TG TG TG TG TA TG TA
112200 GA * 10 18/20 GA GA GA GA GA GA GA GA GA AC
117027 AT * 10 19/20 AT AT AT AT AT AT AT AT AA AT
117058 AT * 10 18/20 AT AT AT AT AT AT AT AC AT AC
117222 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AC TA
117244 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA TG CA
120097 AC * 13 24/26 AC AT AC AC AC AC AC AC AC AC AC AC GC
120339 AT * 23 42/46 AT AC AT AT AT AT AT AT AT AT TT AT AT AT AT AT AT AT AT AG AC AT AT
131863 CT * 10 18/20 CT AT CT CT CT CT CT CC CT CT
198550 TA * 10 18/20 TA TG TA TA TA TG TA TA TA TA
206444 TA * 16 30/32 TA TA TG TA TA TA TA GA TA TA TA TA TA TA TA TA
209024 GA * 11 20/22 GA GA GA GA GA GA GA GA GA GA TG
210688 TA * 13 24/26 TA TA CA TA TA TA TA TA TA TA CA TA TA
213281 AT * 10 18/20 AT AT AT AT GT AC AT AT AT AT
216897 TA * 11 20/22 TA TA TA TA TA TA TC TA TA TA TT
221809 AT * 11 20/22 AT TT AT AT AT AT AT AT AT AT GT
223201 AT * 10 18/20 AT AT AT GT AT AT AT GT AT AT
223407 CA * 10 19/20 CA CA CA CA CA CA CA CA CA CG
226585 TA * 13 24/26 TA TG TA TT TA TA TA TA TA TA TA TA TA
239592 TA * 14 26/28 TA TA TA TA TA TA TT CA TA TA TA TA TA TA
240422 TA * 13 24/26 TA TA TA TA TA TA TG TA AA TA TA TA TA
240883 AT * 12 22/24 AT AT AT AT AT AT AT AT GT AT AT TT
247830 AG * 11 20/22 AG AG AG AG AG AG AC AG AG AA AG
253155 AT * 13 24/26 AT AT AT AT AT AA AT AT AT AT TT AT AT
258492 TA * 10 18/20 TA TA TA TA TG TA TA TA TT TA
262335 TA * 11 20/22 TA TA TG TA TA TA TA TA TA TA TT
265063 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CT CG
265865 CA * 11 20/22 CA CA CA CA CA CA CA TA TA CA CA
265901 CT * 10 18/20 CT CT CT CC CC CT CT CT CT CT
267035 AT * 10 18/20 AT AT AT AT GT AT AT GT AT AT
283293 AT * 11 20/22 AT AT AT AT AT AC AT AT AT AG AT
286530 TA * 10 18/20 TA TA TA GA TA TA GA TA TA TA
287170 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA AG CA CA
290860 GA * 10 18/20 GA GA GA GA GT GG GA GA GA GA
291600 CT * 13 24/26 CT CT CT CT CC CT CT CT CT CT CT CT GT
-----------------------------------------------------------------------------------------
Total sequence length......................... 301051
Total number of repeats detected.............. 58
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 15 10 1 6 7 6 1 2 1 3 0 0
15 to 19 0 2 0 0 0 1 0 1 0 0 0 0
20 to 24 1 1 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 16 13 1 6 7 7 1 3 1 3 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
16 AT + 13 TA = 29
1 AG + 6 GA + 3 CT + 1 TC = 11
3 GT + 1 TG + 7 CA + 7 AC = 18
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7292639|gb|AE003486.1|AE003486 Drosophila melanogaster genomic scaffold 142000013386053 section 3 of 30, complete sequence
Position Repeat Coverage Repeat
855 AG * 10 18/20 AG AG AG AG AG AG TG TG AG AG
8563 TC * 10 18/20 TC TC TC TC TA TC TC TG TC TC
17689 AT * 10 19/20 AT AT GT AT AT AT AT AT AT AT
17711 AT * 15 27/30 AT AT AT AT AT AT AT AT AT AG AT AT AT AC AC
18677 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC AC AA AT
33276 GT * 11 20/22 GT GT GT GT GT GT GT GT AT GG GT
43973 TA * 11 20/22 TA TA TA TA TA TT AA TA TA TA TA
45405 TG * 14 26/28 TG AG TG TG TG TG TG TG TG TG TG TT TG TG
50106 TA * 10 18/20 TA TA TA TG TA CA TA TA TA TA
50129 AT * 10 19/20 AT AT AT AT AT AC AT AT AT AT
64964 CA * 15 28/30 CA CA CA AA CA CA CA CA CA CA CA CA CG CA CA
69739 AT * 12 22/24 AT AT AT AA AT AT AA AT AT AT AT AT
79675 TA * 11 20/22 TA AA TA TA TA TA TA TG TA TA TA
82303 TA * 10 18/20 TA TA TA TA TG TA CA TA TA TA
84025 AT * 12 22/24 AT AT AT AT AT CT AT AT AT CT AT AT
84360 GT * 13 24/26 GT GT GT GT GT GT GT GT GG GT GT GT GA
87236 AC * 23 42/46 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AG AC AC AC AC AC AT GC AA
88381 GA * 12 22/24 GA AA CA GA GA GA GA GA GA GA GA GA
90525 AT * 11 20/22 AT AT AA AG AT AT AT AT AT AT AT
90549 AT * 12 22/24 AT AT AT AT AT GT AT AT AT AT AT TT
116186 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CT GA CA
120557 AT * 12 22/24 AT GT AT AT AT AA AT AT AT AT AT AT
123099 TA * 10 18/20 TA TA TA TA TA TA CA TA TA TT
124924 TA * 11 21/22 TA TA TA TA TA TA TA TA TA TA CA
125912 TG * 12 22/24 TG AT TG TG TG TG TG TG TG TG TG TG
130527 CA * 17 31/34 CA CC CA CA CA CA CA CA CA CA CA CG CA CA CA CA CT
131121 TG * 11 20/22 TG TG TG TG CG TT TG TG TG TG TG
134102 GT * 10 18/20 GT GT GT GT GT GT GT GT GA GG
136590 GT * 10 19/20 GT GT GT GT GT GT GT GT GT GG
139108 TC * 12 22/24 TC TC TC TC TC TC TC TC TC TC TG GC
141368 TC * 11 20/22 TC TT GC TC TC TC TC TC TC TC TC
145196 AT * 10 18/20 AT AT AT AT AC AT AC AT AT AT
163394 CA * 11 20/22 CA CT CA CA CA CA CA CA TA CA CA
166960 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC AC AC TT
196070 AT * 10 18/20 AT AT AC AT AT AT AT AT AC AT
198329 AT * 10 18/20 AT AT AT AT AT AT GT AT AT AG
200612 CA * 10 18/20 CA CT CA CA CA CA CA CA CT CA
210923 AC * 12 22/24 AC TC AC AC AC AC AC AC AC AC AC AT
211613 AT * 12 22/24 AT AT AT TT AT AT AT AT AT TT AT AT
216313 GT * 10 18/20 GT GT GT GT GT GT GT GT CA GT
220025 TA * 13 24/26 TA TA TA TA TA TA TT TA TG TA TA TA TA
222204 TG * 14 26/28 TG TT TG TG TG TG TG TG TG TA TG TG TG TG
222616 CT * 17 32/34 CT CT CT CT CT CC CT CT CT CC CT CT CT CT CT CT CT
226891 AT * 11 20/22 AT AT AT AT AT AT AT AT AT CT TT
227179 TG * 16 29/32 TG TG TG TG TG TG TG TG TG TG TG TG TG CG TT TA
227413 TG * 10 19/20 TG TG TG TG TG TG TG TA TG TG
228407 TA * 10 18/20 TA TA TA TA TG TT TA TA TA TA
232982 CA * 10 18/20 CA AA CA CA CA CA TA CA CA CA
242995 AC * 12 22/24 AC AC AC AC AC AC AC AT AC AC AC AT
244138 TG * 16 29/32 TG TC TG TG TG TG TG TG TG TG TG TG TG TG TC GG
256503 AC * 10 18/20 AC AC GG AC AC AC AC AC AC AC
275240 AT * 10 19/20 AT AT AT AT AT AT AT AT AT AC
275335 TA * 12 22/24 TA TA TA TA TA TA AA GA TA TA TA TA
279379 CA * 13 24/26 CA TA CA CA CA CA CA CA CA CA GA CA CA
285144 AT * 15 27/30 AT AT AT AT AT AT AT AT GT AT AT AT AC AT AA
285986 CT * 21 38/42 CT CC CT CT CC CT CT CT CT CT CT CT CT CT CT CT CT CC CT CT CA
287669 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT CG GT
289387 TC * 10 18/20 TC TC TA TC TC TC TC TC TG TC
293031 TA * 15 27/30 TA TA TA TA CA TA TA AA TA TA TA TA TA TA TG
295368 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CA AC
299557 AT * 12 22/24 AT AT AT AT AT AT AC AT AT AT AT AA
302302 AT * 11 20/22 AT AT GT CT AT AT AT AT AT AT AT
302886 CT * 21 39/42 CT CT CT CT CT CT CC CT CT CT CT CT CT CT GT CT CT CT CT TT CT
303361 AC * 15 27/30 AC AC AA GC AC AC AC AC AC AC AC AC AC AC AG
-----------------------------------------------------------------------------------------
Total sequence length......................... 303648
Total number of repeats detected.............. 64
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 15 9 1 1 5 6 5 6 4 0 0 0
15 to 19 2 1 0 0 1 2 2 0 0 1 0 0
20 to 24 0 0 0 0 1 0 0 0 0 2 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 17 10 1 1 7 8 7 6 4 3 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
17 AT + 10 TA = 27
1 AG + 1 GA + 3 CT + 4 TC = 9
6 GT + 7 TG + 8 CA + 7 AC = 28
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7292593|gb|AE003485.1|AE003485 Drosophila melanogaster genomic scaffold 142000013386053 section 2 of 30, complete sequence
Position Repeat Coverage Repeat
8084 TA * 12 22/24 TA TA TG TG TA TA TA TA TA TA TA TA
8119 AT * 11 20/22 AT AC AT AT AT AT AT AT AC AT AT
14089 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
14113 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
14137 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
14161 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
14185 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
14209 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
14233 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
14257 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
14281 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
14305 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
14329 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
14353 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
14377 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
14401 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
14425 TA * 11 20/22 TA TA TA TG TA TA TA TG TA TA TA
60239 TG * 10 18/20 TG TG TT TG AG TG TG TG TG TG
61147 TA * 13 24/26 TA TA TA TT TA AA TA TA TA TA TA TA TA
68523 AT * 10 18/20 AT AT AT GT AT AT AC AT AT AT
78072 GA * 19 35/38 GA CA GA GA GA GA GA GA GA GA GA GA TA GA GA GA GA GA GG
79224 AC * 12 22/24 AC AC AA AC AC AC AC AC AC AC AC AA
90820 AC * 22 40/44 AC AC AC GC AC AA AC AC AC AC AC AC AC AC GC AC AC AC AC AC AC AG
93578 TG * 12 22/24 TG TG TG TG TG TG CC TG TG TG TG TG
95303 TG * 28 51/56 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG GG TG CG TG AG TG TG AG CG
122459 TG * 11 20/22 TG CC TG TG TG TG TG TG TG TG TG
129770 CA * 10 18/20 CA CT CA CA CA CA CA CA CG CA
130429 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT CT GG
134374 AT * 13 24/26 AT AT AT AT AT AT AT AT GT AT AT AT AG
135061 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG TT AG
135785 AT * 10 18/20 AT AT CT AT AC AT AT AT AT AT
135820 AT * 12 22/24 AT AT AT AT TT AT GT AT AT AT AT AT
136202 TG * 12 23/24 TG TG TG TG TG TG TG TG TG TG TG TC
136853 GA * 18 33/36 GA GA GA GA AA GA GA GA GA GA GA GA GA GA AA GA GA AA
136889 AG * 12 22/24 AG AG AG AG AG AG AG AG AG AA AA AG
137556 CA * 13 25/26 CA CA CA TA CA CA CA CA CA CA CA CA CA
143552 TG * 10 19/20 TG CG TG TG TG TG TG TG TG TG
154605 GT * 13 24/26 GT GT GT GT GT GT GT GT GT GT GT GG TT
162574 GT * 10 18/20 GT AT GT GT GT GC GT GT GT GT
165527 GT * 12 22/24 GT GT GT GC AT GT GT GT GT GT GT GT
166683 GA * 11 21/22 GA GA GA GA GA GA GA GA GA GA GG
170697 CA * 11 20/22 CA AA CA CA CA CA CA CA CA CA AA
175344 AG * 10 18/20 AG TG AG AG AG AA AG AG AG AG
175865 AG * 11 20/22 AG AG AG AG AG AG AG AG AG GG AA
178016 AT * 10 18/20 AT AC TT AT AT AT AT AT AT AT
178156 TA * 12 22/24 TA TA TG TA TC TA TA TA TA TA TA TA
182387 TG * 12 22/24 TG TG TG TA TG TG TG TG TG TG TG TT
184604 TG * 12 22/24 TG TG TG TT TG TG TG TG GG TG TG TG
190421 CA * 12 22/24 CA CA CA CA TA CA CA CA CA CA TA CA
194361 TG * 10 18/20 TG TG TG TG TG TG TG TG TT TC
196662 TG * 16 30/32 TG AG TG TG TG TG TG TA TG TG TG TG TG TG TG TG
198514 GT * 10 18/20 GT GC CT GT GT GT GT GT GT GT
202976 AT * 10 18/20 AT AT AT AC GT AT AT AT AT AT
203537 TG * 12 22/24 TG TT AG TG TG TG TG TG TG TG TG TG
205750 GT * 20 36/40 GT GT GT GT GT GT GT GT TT GT GT GT GT TT GT GT GT GT GG GG
206287 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA TG CA
209527 AC * 18 33/36 AC AC TC AC AC AC AC AC AC AC AC AC AC AC AC AC AG AT
220438 TC * 11 20/22 TC TC TC TC TC TC TC TA TC TC TT
221622 AT * 10 18/20 AT AA AT AT AT AT AT AT AT TT
239327 GT * 12 22/24 GT GT GT GT GT GT GT GG TT GT GT GT
247990 TA * 17 31/34 TA TA TA TG TA TA CA TA TA TA TA TA TA TA TA AA TA
257918 TG * 13 24/26 TG CG TG TG TG TA TG TG TG TG TG TG TG
268145 TA * 16 29/32 TA TA TA TA TT TA TA TG TA TA TA TA TA TA TG TA
268228 TA * 18 33/36 TA TA TA TA TG AA TA TA TA TA TA TA TA TA TT TA TA TA
283392 GT * 10 18/20 GT GT GT GT AT GT GT GT GC GT
283469 GT * 10 18/20 GT GT GT AT GT GT GT AT GT GT
284037 TG * 12 23/24 TG CG TG TG TG TG TG TG TG TG TG TG
286170 AG * 18 33/36 AG AG AG AG AG AG AG AG TG AG AG AG AG AG AG AG AG GT
287496 TA * 13 24/26 TA TA TA TA TA TA TA TA CA TA TA TA TC
288631 TG * 12 22/24 TG TA TG TG TG TG TG TG TG CG TG TG
292063 GT * 11 20/22 GT AT GT GT GT GT GT GT GT GT TT
293435 CT * 13 24/26 CT CT CT CT CT CT CT CT CT CT CG TT CT
300065 TG * 13 24/26 TG TG CG TG TG TG TG CG TG TG TG TG TG
-----------------------------------------------------------------------------------------
Total sequence length......................... 302427
Total number of repeats detected.............. 73
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 8 19 3 1 1 5 14 9 1 1 0 0
15 to 19 0 3 1 2 1 0 1 0 0 0 0 0
20 to 24 0 0 0 0 1 0 0 1 0 0 0 0
25 to 29 0 0 0 0 0 0 1 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 8 22 4 3 3 5 16 10 1 1 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
8 AT + 22 TA = 30
4 AG + 3 GA + 1 CT + 1 TC = 9
10 GT + 16 TG + 5 CA + 3 AC = 34
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7292554|gb|AE003484.1|AE003484 Drosophila melanogaster genomic scaffold 142000013386053 section 1 of 30, complete sequence
Position Repeat Coverage Repeat
17853 GT * 10 18/20 GT GT AT GT AT GT GT GT GT GT
19564 TA * 11 20/22 TA TA TA TA TA TG TA CA TA TA TA
19972 GT * 10 18/20 GT GT GT GT GT GT TT GT GT AT
21010 AT * 11 20/22 AT AT CT AT AT AT AG AT AT AT AT
21156 AT * 11 20/22 AT TT AT AT AC AT AT AT AT AT AT
30611 TG * 26 47/52 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TA AT GC
36240 CT * 10 18/20 CT CT TT CT CT CT CT CT CT CG
38247 AT * 13 24/26 AT AT AA AT AT AT AT AT AT AT AA AT AT
42463 CA * 12 22/24 CA CA GA CA CG CA CA CA CA CA CA CA
44701 TG * 13 25/26 TG TG TG TG TG TG CG TG TG TG TG TG TG
46917 AG * 17 31/34 AG AG AC AG AG AG AG AG AG AG AG AG AG AA AG AG AA
52227 CA * 15 28/30 CA CA CA CA CA CA CA CA CA CA CA CA CA GA GA
57583 CA * 10 18/20 CA CA CG CA CA CA CA CA AA CA
70078 AT * 16 30/32 AT AT AT AT AT AC AT AT AT AT AT AT AT AT AT AN
93104 CT * 13 24/26 CT AT CT CT CT CT CT CT CT CT CT CG CT
105576 AT * 11 20/22 AT AT AT AT AT AG AT AT AT AG AT
105631 AG * 12 22/24 AG AG AG AG AG AG AT AG AG AG AT AG
133079 TG * 18 33/36 TG CG AG TG TG TG TG TG TG TG TG TG TG TG TT TG TG TG
137439 GT * 10 18/20 GT GT AT GT GT GT GA GT GT GT
149982 AT * 11 20/22 AT AA AT AT AT AT GT AT AT AT AT
150014 AT * 11 20/22 AT AC AT AT AT AT AT AT AT AC AT
150220 AT * 18 33/36 AT AC AT AT AT AT AT AT AT AA AT AT AT AT AT AT AT TT
158600 AG * 10 18/20 AG AG AG AG CG AG AG AG AG CG
163111 GT * 12 23/24 GT AT GT GT GT GT GT GT GT GT GT GT
163705 AC * 17 31/34 AC AC GC AC AC AC AC AC AC AC AC AG AC AC AA AC AC
165356 AT * 10 19/20 AT AT AT AT GT AT AT AT AT AT
208159 AC * 11 20/22 AC AC AC AC AC AC AT GC AC AC AC
209143 TA * 15 27/30 TA TA TA TA TA TA TA TA TG AA TA TA TA TA TT
214417 AT * 10 18/20 AT CT AT AG AT AT AT AT AT AT
215570 AT * 10 18/20 AT AC AT AT AT AT GT AT AT AT
216090 TA * 10 18/20 TA AG TA TA TA TA TA TA TA TA
229401 CA * 11 20/22 CA CA CA CA CA CA CA CA CT CA CT
233426 CA * 10 18/20 CA CA CA CA CA CA CG CA CA GA
241999 CA * 10 18/20 CA CA CA CA CC CA CA CA CA CG
243024 TG * 12 22/24 TG CG TG TG TG TG TG TG TG TG TA TG
243949 TA * 14 26/28 TA TA TA TA TA TA TA TA TG TA TA TG TA TA
245053 GA * 15 28/30 GA AA GA GA GA GA GA GA GA GA GA GA GA GA GG
251418 GT * 10 18/20 GT AT GT AT GT GT GT GT GT GT
253119 TG * 13 24/26 TG TG TG TG TG TG TG TG TT TG TG AG TG
255160 TA * 12 22/24 TA TC TA CA TA TA TA TA TA TA TA TA
259289 TG * 12 22/24 TG TG TC TG TG TA TG TG TG TG TG TG
259365 GT * 10 18/20 GT GT GT GT GA GT GT GT TT GT
265310 AC * 15 28/30 AC GC AC AC AC AC AC AC AC AC AC AC AC AC AT
266996 TG * 16 29/32 TG TG TG TG CG TG TG TG TG TG TG TG TG TG TG AC
272062 TG * 10 18/20 TG TG CG TG TG TA TG TG TG TG
272265 AT * 11 20/22 AT AT AT AT AT AT AT AT AT TT TT
284507 TG * 10 18/20 TG TG TG TG TG TG TG TG GG GG
287115 TA * 13 24/26 TA TA TA TA TA TA TA TG TA TA TG TA TA
295172 AT * 10 18/20 AT AT AT AT AT AC AT AT AT TT
296076 TG * 11 20/22 TG TG TG TG TG TG TG TA AG TG TG
296139 GT * 11 21/22 GT GT GT GT GT GT GT GT GT GT GC
297099 AC * 11 20/22 AC GC AC GC AC AC AC AC AC AC AC
305684 AT * 10 18/20 AT AT AT GT AT AT GT AT AT AT
308551 CA * 15 28/30 CA CA CC CA TA CA CA CA CA CA CA CA CA CA CA
309371 CT * 13 24/26 CT CT CT CT GT CT CT CT CT TT CT CT CT
312540 AC * 11 20/22 AC AC AA AC AC AC AC AC AC AC AA
312972 AT * 10 18/20 AT AG AT AT AC AT AT AT AT AT
312993 TA * 12 23/24 TA TA TA TA TA TA TA TG TA TA TA TA
-----------------------------------------------------------------------------------------
Total sequence length......................... 314087
Total number of repeats detected.............. 58
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 13 6 2 0 3 5 7 7 0 3 0 0
15 to 19 2 1 1 1 2 2 2 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 1 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 15 7 3 1 5 7 10 7 0 3 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
15 AT + 7 TA = 22
3 AG + 1 GA + 3 CT + 0 TC = 7
7 GT + 10 TG + 7 CA + 5 AC = 29
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289319|gb|AE002799.1|AE002799 Drosophila melanogaster genomic scaffold 142000013385566, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 18364
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7288894|gb|AE002936.1|AE002936 Drosophila melanogaster genomic scaffold 142000013385220, complete sequence
Position Repeat Coverage Repeat
-----------------------------------------------------------------------------------------
Total sequence length......................... 48123
Total number of repeats detected.............. 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7289027|gb|AE003066.1|AE003066 Drosophila melanogaster genomic scaffold 142000013385325, complete sequence
Position Repeat Coverage Repeat
9486 AT * 11 20/22 AT AT CT AT AT AC AT AT AT AT AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 28380
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 1 0 0 0 0 0 0 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 1 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
1 AT + 0 TA = 1
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 0 TG + 0 CA + 0 AC = 0
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Genomic Sequence:..
gi|7288910|gb|AE003200.1|AE003200 Drosophila melanogaster genomic scaffold 142000013385226, complete sequence
Position Repeat Coverage Repeat
2510 TA * 12 22/24 TA TA TA TA TA TA TG TA TA TA TA GA
-----------------------------------------------------------------------------------------
Total sequence length......................... 14631
Total number of repeats detected.............. 1
-----------------------------------------------------------------------------------------
Minimum Di-Nucleotide repeat units............ 10
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 0 1 0 0 0 0 0 0 0 0 0 0
15 to 19 0 0 0 0 0 0 0 0 0 0 0 0
20 to 24 0 0 0 0 0 0 0 0 0 0 0 0
25 to 29 0 0 0 0 0 0 0 0 0 0 0 0
30 to 34 0 0 0 0 0 0 0 0 0 0 0 0
35 to 39 0 0 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 0 0 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Total 0 1 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
0 AT + 1 TA = 1
0 AG + 0 GA + 0 CT + 0 TC = 0
0 GT + 0 TG + 0 CA + 0 AC = 0
0 GC + 0 CG = 0
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Di-nucleotide repeats in Drosophila melanogaster Chromosome-X genomic scaffolds
Minimum di-nucleotide repeating units = 10 (allowing maximum 10% mismatch)
Total 4721 repeats covering 108681 / 118734 base pairs
Length distribution of all di-nucleotide repeats
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no. of repeat-units 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 >=50
total repeats 1414 936 708 558 108 243 221 188 115 21 58 42 27 19 1 20 10 10 4 2 3 5 1 2 0 1 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0
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Length distribution of all di-nucleotide repeats in range
no. of repeat-units 10-14 15-19 20-24 25-29 30-34 35-39 40-44 45-49 >=50