Tetra-Nucleotide Repeats in Genomic Sequences
Tetra-Nucleotide Repeats
C. elegans Chromosome-X complete sequence
Genomic sequence...
lcl|chr_X
Position Repeat Coverage Repeat
83497 GTTT * 5 18/20 GTTT GTTT GTTT GTTT TTGT
166070 TGGC * 5 18/20 TGGC TGGT TGGC TGAC TGGC
176837 AATA * 5 18/20 AATA AAAA AATA AAAA AATA
265446 TATT * 6 22/24 TATT TATT TATG CATT TATT TATT
446404 AGAA * 5 18/20 AGAA AGAA AGAG AGAA AGCA
448181 AGGC * 7 27/28 AGGC AGGT AGGC AGGC AGGC AGGC AGGC
524882 TTTC * 5 18/20 TTTC TTTC CTTC TTTG TTTC
533322 AAGT * 5 18/20 AAGT GAGT AAGT AAGT ACGT
624661 AATA * 6 22/24 AATA AATA AACA AATA AATA AATG
632143 AATA * 5 18/20 AATA AATA AACA AATA AGTA
666439 ATTT * 5 18/20 ATTT ATTT ATTT ATTT TTAT
813684 TATT * 5 18/20 TATT TATT TCAT TATT TATT
838328 TATT * 5 18/20 TATT TATT TGAT TATT TATT
983219 TGCC * 5 18/20 TGCC TGCC TTCC TACC TGCC
983256 CCTA * 5 18/20 CCTA TCTA CCTA TCTA CCTA
1314839 TGGC * 5 18/20 TGGC TGGC TAGC TGGA TGGC
1334558 TTTA * 5 18/20 TTTA TTTT TTTA TTTT TTTA
1398718 TATG * 5 18/20 TATG GATG TTTG TATG TATG
1545919 TTAT * 5 18/20 TTAT TTAC CTAT TTAT TTAT
1559785 TTAT * 6 22/24 TTAT TGAT TGAT TTAT TTAT TTAT
1730060 ACAT * 5 18/20 ACAT ACAC ACAT ACAT ACAG
1759433 TTAT * 5 18/20 TTAT TTAG TTAT TTAA TTAT
1943816 AATA * 5 18/20 AATA GATA AATA AATA AATG
2175976 ATTT * 5 18/20 ATTT ATTT TTTT ATTT TTTT
2236923 TCAT * 5 18/20 TCAT TCAT TTAG TCAT TCAT
2269513 CCTT * 5 18/20 CCTT CCTT CCTT TTTT CCTT
2399954 GTTT * 5 18/20 GTTT GTTT GTTG GTTT TTTT
2401475 TTTA * 5 19/20 TTTA TTTA TTTA TTTA TTTG
2461981 TCAA * 7 27/28 TCAA TCAA TCAA TCAA TCAC TCAA TCAA
2530230 GACG * 5 19/20 GACG GACG GACG GACG GAGG
2591333 CTCA * 6 22/24 CTCA CTCA CCCA CTCA CTCA CTAA
2643071 TGTA * 5 18/20 TGTA TGTA TGTA TGTG TGTG
2900271 TTTA * 6 22/24 TTTA TTTA TTTA TTTA TTTT TATA
2934246 AAAG * 5 18/20 AAAG AAAG AAAA GAAG AAAG
3011892 AATT * 5 19/20 AATT GATT AATT AATT AATT
3087705 TAAG * 5 18/20 TAAG TAAC TAAG TAAG TAAA
3223319 GAAG * 5 19/20 GAAG GAAG AAAG GAAG GAAG
3248802 TCTT * 5 18/20 TCTT TCTT TCTT TTTT TCGT
3259134 ATGT * 5 18/20 ATGT ATGT GTGT ATGT GTGT
3295913 AGAA * 5 18/20 AGAA AGGA AGAA AGAA AGGA
3300713 GTAA * 5 19/20 GTAA GTAA GTAA TTAA GTAA
3300735 AGTA * 5 18/20 AGTA AGTA ATTA AGTA AGGA
3300755 GTAA * 7 26/28 GTAA GTAA GTAA GTAA ATAA GTAA GAAA
3390199 TATG * 5 18/20 TATG TATG TGTA TATG TATG
3588247 ACAT * 5 18/20 ACAT ACAC ACAT ACAT ACAC
3651816 GAAA * 5 18/20 GAAA CAAA GAAA GAAA GAGA
3717109 TTCA * 5 19/20 TTCA TTCA TTCA TTCA TTAA
3954227 TATT * 6 22/24 TATT AATT TATT AATT TATT TATT
3956913 TATT * 5 18/20 TATT TATT TATT TATT AAAT
3956955 TATT * 5 19/20 TATT TATT TATT TATT TAAT
3958694 CCAT * 5 18/20 CCAT CGAT CCAT CCAC CCAT
3959628 ATCC * 5 20/20 ATCC ATCC ATCC ATCC ATCC
3959897 AGAA * 5 19/20 AGAA AGAA AGAA AGAA GGAA
4023427 AATA * 5 18/20 AATA AAAA AATG AATA AATA
4090271 TTGT * 5 19/20 TTGT TTGT TTGT TTGT TTTT
4138563 TGGC * 5 18/20 TGGC TGGT TGGT TGGC TGGC
4140208 AGAA * 5 18/20 AGAA AGAA AGAG AGAG AGAA
4255939 TTTC * 5 19/20 TTTC TTTC TTTC TTTC TTTA
4280617 CAAA * 5 19/20 CAAA CAAA CAAG CAAA CAAA
4541412 GTTT * 6 22/24 GTTT GTCT GTTT GTCT GTTT GTTT
4655940 TCTT * 5 18/20 TCTT CCTT TCTC TCTT TCTT
4827227 AAAT * 5 19/20 AAAT AAAT AAAT AAAT ATAT
4897006 ATTT * 5 18/20 ATTT ATTT TTTA ATTT ATTT
4933505 AATT * 5 18/20 AATT CATT AATT TATT AATT
4979887 TATT * 6 22/24 TATT TATT TATT TATT TAAT TAAT
4979911 ATTT * 5 18/20 ATTT ATTT ATTT AATT AATT
4979949 TATT * 6 23/24 TATT TATT TATT TATT TAAT TATT
4979991 TATT * 5 19/20 TATT TATT TATT TAAT TATT
4980011 ATTT * 5 18/20 ATTT ATTT ATTT AATT ATTA
4980047 TTAT * 5 18/20 TTAT TTAT TTAT TTAA TTAA
4980147 TATT * 5 18/20 TATT TATT TATT TATT CATC
4981691 TAAA * 5 18/20 TAAA TAAA TAAA TAAA TATT
4981752 TAAA * 5 18/20 TAAA TAAA TAAA TAAA TATT
4981798 TAAA * 5 18/20 TAAA TAAA TAAA TAAA TATT
4983345 AATA * 5 19/20 AATA ATTA AATA AATA AATA
4983402 AATA * 5 19/20 AATA ATTA AATA AATA AATA
4983458 AATA * 5 19/20 AATA ATTA AATA AATA AATA
4983478 ATAA * 5 18/20 ATAA TTAA ATAA ATAA ATAT
4983520 TAAA * 5 18/20 TAAA TAAA TAAA TAAA TATT
4983543 TAAA * 5 18/20 TAAA TAAA TAAA TAAA TATT
4983566 TAAA * 5 18/20 TAAA TAAA TAAA TAAA TATT
4983697 AATA * 5 19/20 AATA ATTA AATA AATA AATA
4983779 TAAA * 5 18/20 TAAA TATT TAAA TAAA TAAA
4983802 TAAA * 5 18/20 TAAA TAAA TAAA TAAA TATT
4984046 AATA * 5 19/20 AATA ATTA AATA AATA AATA
4984103 AATA * 5 19/20 AATA ATTA AATA AATA AATA
4984123 ATAA * 5 18/20 ATAA TTAA ATAA ATAA ATAT
4984165 TAAA * 5 18/20 TAAA TAAA TAAA TAAA TATT
4984188 TAAA * 5 18/20 TAAA TAAA TAAA TAAA TATT
4984262 AATA * 5 19/20 AATA ATTA AATA AATA AATA
4984319 AATA * 5 19/20 AATA ATTA AATA AATA AATA
4984401 TAAA * 5 18/20 TAAA TATT TAAA TAAA TAAA
4984424 TAAA * 5 18/20 TAAA TAAA TAAA TAAA TATT
5089004 ACGG * 5 18/20 ACGG ACGG ATGG ATGG ACGG
5120446 TTTG * 5 18/20 TTTG TTTG TTTG TTTT TTTT
5691233 CTTT * 5 18/20 CTTT CTCT CTTT CTTT TTTT
5826346 AAGA * 5 18/20 AAGA AAGA GATA AAGA AAGA
6039918 TAAA * 5 18/20 TAAA TAAA TAAA TAAA TCTA
6084051 ATCC * 21 76/84 ATCC ACCC ATCC ATCC ATCC ATCC ATCC ATCC ATCC ATCC ATCC ATCC ATCC ATCC ATCC ATCC ATCC ATCC ATCC CAAT CGTC
6141904 TTAT * 5 18/20 TTAT TGAT TGAT TTAT TTAT
6143386 AAAT * 5 18/20 AAAT AAAT AAAT TAAT AAAA
6574079 AAAT * 5 18/20 AAAT AAAT ATAT AAAT ATAT
6575240 TATT * 5 18/20 TATT TATA TATT TCTT TATT
6797256 AATA * 10 37/40 AATA AATA AATA AATA AATA AATA AATA TATA TATA TATA
6858927 TTAA * 5 18/20 TTAA TTAA TTAA TTGA GTAA
7081107 GTAT * 5 19/20 GTAT GTAT GTAT GTGT GTAT
7177405 AATA * 5 18/20 AATA CAAA AATA AATA AATA
7206006 GTAT * 5 18/20 GTAT GTAT GTGT GTAT GTGT
7237333 TATT * 6 22/24 TATT TATT TAAC TATT TATT TATT
7305221 TGTT * 5 18/20 TGTT TGTT TGTT TGTT ATTT
7325224 TAAG * 6 22/24 TAAG TAAG TAAG TAAG TAAG TACT
7449519 AAAT * 5 18/20 AAAT AAAA AAAT AAAT AATT
7542945 TTCA * 5 18/20 TTCA TTCA TTCA TTCA TGGA
7589138 ATAA * 5 18/20 ATAA ATAA CTAA AAAA ATAA
7697994 AATA * 5 18/20 AATA AATC AATA AATT AATA
7701978 TAAA * 5 18/20 TAAA TAAG CAAA TAAA TAAA
7735400 AGAA * 5 18/20 AGAA AGAA AAAA AAAA AGAA
7756408 TTTG * 5 18/20 TTTG TTTG TTTT TTTT TTTG
7798371 TCTT * 6 22/24 TCTT TCTT TCTT TCTT TCTC TGTT
7800269 TGTA * 5 18/20 TGTA TGTG TGTA TGTG TGTA
7813363 CTTT * 5 18/20 CTTT CGTT CTTT CTTC CTTT
7914185 TTTA * 8 30/32 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTAC
7916945 TTAT * 5 19/20 TTAT CTAT TTAT TTAT TTAT
7932506 AATA * 5 19/20 AATA AATA AATG AATA AATA
8035036 TGAG * 5 18/20 TGAG TGAG AGAG TGAG AGAG
8116214 TTTA * 5 18/20 TTTA TTAT TTTA TTTA TTTA
8162074 ATTT * 5 18/20 ATTT ATTT ATTT ATTT AATA
8197773 AAAT * 5 18/20 AAAT AAAC AAAT AAAT AAAA
8219330 TTAC * 5 18/20 TTAC TTAC TTGC TTAG TTAC
8237928 GAAT * 6 22/24 GAAT GAAT AAAT GAAT GAAT GAAG
8430133 TTAT * 5 18/20 TTAT TTAT TTAT TTAT TGAG
8632454 ATAA * 6 22/24 ATAA ATAA ATAA ATAA ATAT ATAT
8817139 TTTC * 5 18/20 TTTC TTTT TTCC TTTC TTTC
8873064 AACT * 5 18/20 AACT AACT AACT AACA AAAT
8929273 TAAC * 5 18/20 TAAC TAGC TAAG TAAC TAAC
8954527 AATA * 5 19/20 AATA ATTA AATA AATA AATA
8954571 TAAA * 5 18/20 TAAA TAAA TAAA TAAA TATT
8954594 TAAA * 5 18/20 TAAA TAAA TAAA TAAA TATT
8954788 TAAA * 5 18/20 TAAA TAAA TAAA TAAA TATT
8954811 TAAA * 5 18/20 TAAA TAAA TAAA TAAA TATT
8954847 ATTA * 5 18/20 ATTA ATTA ATTA AATA AATA
8955036 ATTA * 5 18/20 ATTA ATTA ATTA AATA AATA
9010223 TTAT * 5 18/20 TTAT TTAT TTAT TTAT TTTG
9127621 ATTC * 5 18/20 ATTC ATTT GTTC ATTC ATTC
9205613 AAAT * 5 18/20 AAAT AAAT AAAT AAAG ATAT
9261008 GAAA * 5 18/20 GAAA AAAA GAAA GAAA AAAA
9332260 TTTC * 5 18/20 TTTC TCTC TGTC TTTC TTTC
9410003 TTAT * 6 22/24 TTAT TTAT TTAT TTAT TTAT TTGG
9447287 AAAT * 5 18/20 AAAT AAAT TAAT AAAA AAAT
9545324 AAAT * 6 22/24 AAAT AAAC AAAT AAAT AAAT AAAA
9919175 AATA * 5 18/20 AATA AATA AATA AATA ATTT
9996203 TAAA * 5 18/20 TAAA TAAA AAAT TAAA TAAA
10058226 TTTA * 5 19/20 TTTA TTTT TTTA TTTA TTTA
10060935 TAAC * 6 22/24 TAAC TAAC TAAC TAAC TTAC TTAC
10074338 TTAA * 5 19/20 TTAA TTAA TTAA TTAA TTTA
10114535 TTTA * 5 20/20 TTTA TTTA TTTA TTTA TTTA
10119865 TTTG * 5 18/20 TTTG TTTT TTTG TTTT TTTG
10354720 TGAC * 5 18/20 TGAC TGAC TGAC GGAC AGAC
10528026 ATGG * 5 18/20 ATGG ATGA ATGG ATGG ACGG
10553295 AAGA * 5 18/20 AAGA AGGA AAGA AAGC AAGA
10695536 TTTA * 5 19/20 TTTA TTTA TTCA TTTA TTTA
10997732 AATA * 5 18/20 AATA ATTA AATA ATTA AATA
11006860 ATAA * 5 18/20 ATAA AAAC ATAA ATAA ATAA
11077419 AAGA * 5 18/20 AAGA AAAA AAGA AAGA AAAA
11109188 AAAG * 6 23/24 AAAG AAAG AAAG AAAG AAAG AAAA
11144066 GAAT * 6 22/24 GAAT GAAT GAAT CAAT GAAT CAAT
11316071 ACTG * 6 22/24 ACTG ACTG AATG ACTG ACTG ACTT
11350197 TACA * 5 18/20 TACA TACA TATC TACA TACA
11384176 AATA * 5 18/20 AATA AAAA AATA AATA AAAA
11437302 TTTA * 5 18/20 TTTA TTTA TTTT TTTA TTGA
11548414 ATGA * 5 19/20 ATGA ATGA ATGA CTGA ATGA
11586446 TAGA * 5 18/20 TAGA TAGA TGGA AAGA TAGA
11603580 TTTG * 5 18/20 TTTG TTTG TTTA TTTG TTTC
11729007 TAAA * 5 18/20 TAAA TAAG TAAA TAAA TTAA
11755459 CAAA * 5 18/20 CAAA CAAA CAAA CAAA CTCA
11832243 TTTC * 5 18/20 TTTC TTTC TTTC TTTC TTGA
11852138 GTTA * 5 18/20 GTTA GTTA GGTA GTTA GGTA
12029068 TATT * 5 18/20 TATT TATT TATT TAAT TAAT
12029129 TATT * 5 18/20 TATT TATT TATT TAAT TAAT
12029167 TATT * 5 18/20 TATT TATT TATT TAAT TAAT
12029187 ATTT * 5 18/20 ATTT ATCT ATTT ATTT AATT
12029209 TATT * 5 18/20 TATT TATT TATT TAAT TAAT
12029229 ATTT * 5 18/20 ATTT ATTT ATTC ATTT AATT
12029251 TATT * 5 18/20 TATT TATT TATT TAAT TAAT
12029289 TATT * 6 22/24 TATT TATT TATT TATT TAAT TAAT
12029316 TATT * 5 18/20 TATT TATT TATT TAAT TAAT
12029354 TATT * 5 19/20 TATT TATT TATT TATT TAAT
12029411 TATT * 5 18/20 TATT TATT TATT TAAT TAAT
12029487 TATT * 5 18/20 TATT TATT TATT TAAT TAAT
12029602 TATT * 5 18/20 TATT TATT TATT TAAT TAAT
12041608 AAAG * 5 18/20 AAAG AAAG AATG AAAT AAAG
12134339 TAAA * 5 18/20 TAAA TAAA TAAA CAAA TAAC
12176512 TTAT * 6 24/24 TTAT TTAT TTAT TTAT TTAT TTAT
12210436 TATT * 5 19/20 TATT TATT TATT TATT TATC
12356764 GGAT * 5 18/20 GGAT GGAT GGAT GGAT CGAC
12357547 GGAT * 6 22/24 GGAT GGAT GGAT GGAA GGAT CGAT
12357746 AGGA * 5 18/20 AGGA AGGA AGGA TGGA TGGA
12421139 AGAA * 5 18/20 AGAA AGAA AGAT AAAA AGAA
12443565 TATT * 5 18/20 TATT TATT GTTT TATT TATT
12522860 CATT * 5 18/20 CATT CATT CATT CATT CAAC
12524746 TTAT * 5 18/20 TTAT TTAT TTAT TTAT TTTC
12711989 TGAA * 5 18/20 TGAA TAAA TTAA TGAA TGAA
12841222 AATA * 5 19/20 AATA AATA AATA AATA ATTA
12887455 ATAA * 5 18/20 ATAA ATGA ATAA AAAA ATAA
12910201 ACAT * 5 18/20 ACAT ACAT ACAC ACAT ACAC
12962064 TGTA * 5 18/20 TGTA TGTA TGTA TGTG TATA
12980257 AAAT * 5 18/20 AAAT AAAT GAAT AAAA AAAT
13068693 CATT * 5 18/20 CATT CAGT CATT TATT CATT
13081584 TTTA * 5 18/20 TTTA TTTA TTTA TTAA TATA
13408317 TCAT * 5 20/20 TCAT TCAT TCAT TCAT TCAT
13419950 AAAT * 5 18/20 AAAT AAAT TATT AAAT AAAT
13580626 AAGA * 5 18/20 AAGA AACA GAGA AAGA AAGA
13583567 TGTA * 5 18/20 TGTA TATG TGTA TGTA TGTA
13638233 AGGA * 5 18/20 AGGA TGGA AGGA AGGA AGAA
13675410 ATAA * 5 18/20 ATAA ATAA ATAA ATAA AAAT
13713009 TAAA * 5 18/20 TAAA TAAA CAAC TAAA TAAA
13754203 ACTA * 6 22/24 ACTA AGTA ACTA ACTA ACTA AGTA
13828545 GTAG * 5 18/20 GTAG GTAC GTAG GTAC GTAG
13943578 ATAA * 5 18/20 ATAA ATAA ATAA ATAA ATTG
14112426 CTTT * 5 18/20 CTTT CTTC CTTT CCTT CTTT
14154300 CTTT * 5 18/20 CTTT CTTC CTTT CCTT CTTT
14364658 TAAG * 6 22/24 TAAG TAAG TAAG TAAG TAAG TTAA
14531257 TAAG * 6 22/24 TAAG TAAG TAAG TAAG TAAG TTAA
14687873 ACAT * 5 19/20 ACAT ACAT ACAT ACAC ACAT
14694430 GAAT * 5 18/20 GAAT AAAT GAAT AAAT GAAT
14803750 TAAA * 5 18/20 TAAA TAGA TAAA TAAA AAAA
14919209 AATC * 5 18/20 AATC AATA AATC AATC AAAC
14953993 TGGC * 5 19/20 TGGC TGGC TGGC TGGC TGGG
14960058 TAAA * 5 18/20 TAAA TAAA TAAA TAAA CGAA
15040079 ATAC * 5 18/20 ATAC ATGT ATAC ATAC ATAC
15169033 TAAA * 6 23/24 TAAA CAAA TAAA TAAA TAAA TAAA
15253721 CCGC * 5 18/20 CCGC GCGC GCGC CCGC CCGC
15410002 TACT * 6 22/24 TACT TACT TACT TACT TATT TAAT
15513625 TTAT * 5 18/20 TTAT TTAT TTAT TGAT TCAT
15553675 TTTA * 5 18/20 TTTA TTTA TTTA TTTT TTTT
15584751 ATTA * 5 18/20 ATTA ATTA ATTA ATAT ATTA
15616507 AAAT * 5 18/20 AAAT AAAG ATAT AAAT AAAT
15710717 TAAT * 6 22/24 TAAT TAAT TAAT TAAT TAAT TAGG
15814270 TATT * 5 18/20 TATT TATT TTTT TATT TGTT
16020567 GTTA * 6 22/24 GTTA GTTA GTTA GTTA GTAA GTGA
16030442 GATA * 10 36/40 GATA GATA GATA GTTA GATA GATG GATA GATA GATA CATG
16056786 AGAA * 5 18/20 AGAA AAAA AGAA AGAA AAAA
16064897 AAGA * 5 18/20 AAGA AACA AAGA AAGA AAGT
16074987 GAAA * 5 18/20 GAAA GAAA AATA GAAA GAAA
16090072 TATT * 5 19/20 TATT TATT TATT TATT TTTT
16125768 AAAG * 5 18/20 AAAG AATG AAAG AAAA AAAG
16497710 ACTT * 5 18/20 ACTT ACTT ACTT ACTT AGTC
16556100 TAAG * 6 22/24 TAAG TAAG TAAG TAAG TATC TAAG
16716150 AACA * 5 18/20 AACA AACA AACA AACA AAAC
16739666 AAAT * 5 18/20 AAAT AAAT AAAT AAAT GATT
16748121 AAAG * 5 18/20 AAAG AAAG AGAG AAAG AAAA
16766441 CCAT * 5 18/20 CCAT CGAT CCAT CCAC CCAT
16767109 CCAT * 5 18/20 CCAT CGAT CCAT CCAC CCAT
16767191 CATC * 5 19/20 CATC GATC CATC CATC CATC
16768328 AGAA * 5 19/20 AGAA AGAA AGAA AGAA GGAA
16799461 AAAG * 6 22/24 AAAG AAAA AAAG AAAG AAAG AAAT
16885068 ACAA * 6 23/24 ACAA ACAA ACAA ACAA ACAA ACAC
16942122 ATAA * 6 22/24 ATAA ATAA ATAA ATAA ATAT ATAC
16950513 GTTT * 6 22/24 GTTT GTTT GTTT GTTT GTTT ATAT
17074751 TGTT * 5 19/20 TGTT TGTT TGTT TGTT TATT
17277303 TTAC * 6 23/24 TTAC TTAC TTAC TTAC TTAC TTAG
17369400 ATTT * 5 18/20 ATTT CTGT ATTT ATTT ATTT
17488928 TAAA * 5 18/20 TAAA TAAC GAAA TAAA TAAA
17516810 AGTA * 8 31/32 AGTA AGTA ACTA AGTA AGTA AGTA AGTA AGTA
-----------------------------------------------------------------------------
Total sequence length......................... 17624844
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 264
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-12 AAAG-6 AATA-22 AATT-2 AATC-1 AAGA-5 AAGT-1 AACA-1
AACT-1 ATAA-9 ATAC-1 ATTA-3 ATTT-9 ATTC-1 ATGA-1 ATGT-1
ATGG-1 ATCC-2 AGAA-8 AGTA-2 AGGA-2 AGGC-1 ACAA-1 ACAT-4
ACTA-1 ACTT-1 ACTG-1 ACGG-1 TAAA-26 TAAT-1 TAAG-5 TAAC-2
TATT-27 TATG-2 TAGA-1 TACA-1 TACT-1 TTAA-2 TTAT-12 TTAC-2
TTTA-11 TTTG-4 TTTC-5 TTGT-1 TTCA-2 TGAA-1 TGAG-1 TGAC-1
TGTA-4 TGTT-2 TGGC-4 TGCC-1 TCAA-1 TCAT-2 TCTT-3 GAAA-3
GAAT-3 GAAG-1 GATA-1 GACG-1 GTAA-2 GTAT-2 GTAG-1 GTTA-2
GTTT-4 GGAT-2 CAAA-2 CATT-2 CATC-1 CTTT-4 CTCA-1 CCAT-3
CCTA-1 CCTT-1 CCGC-1
----------------------------------------------------------------------------
Tetra-Nucleotide repeats in C. elegans Chromosome-X complete sequence
Minimum tetra-nucleotide repeating units = 5 (allowing a maximum of 10% mismatch)
Total 1 sequences searched with a total of 17624844 bp length
Total 264 repeats covering 5093 / 5576 base pairs
Length distribution of all tetra-nucleotide repeats
----------------------------------------------------------------------------------------------------------------------------------------------------
No. of repeat units 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 >=25
total repeats 220 36 3 2 0 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
----------------------------------------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tetra-nucleotide repeat classes
12-AAAT 22-AATA 9-ATAA 26-TAAA 9-ATTT 11-TTTA 12-TTAT 27-TATT = 128
6-AAAG 5-AAGA 8-AGAA 3-GAAA 4-CTTT 5-TTTC 0-TTCT 3-TCTT = 34
0-AAAC 1-AACA 1-ACAA 2-CAAA 4-GTTT 4-TTTG 1-TTGT 2-TGTT = 15
2-AATT 3-ATTA 2-TTAA 1-TAAT = 8
0-AATG 1-ATGA 1-TGAA 3-GAAT 2-CATT 1-ATTC 2-TTCA 2-TCAT = 12
1-AATC 0-ATCA 1-TCAA 0-CAAT 0-GATT 0-ATTG 0-TTGA 0-TGAT = 2
1-AAGT 2-AGTA 2-GTAA 5-TAAG 1-ACTT 0-CTTA 2-TTAC 1-TACT = 14
0-AAGG 2-AGGA 0-GGAA 1-GAAG 1-CCTT 0-CTTC 0-TTCC 0-TCCT = 4
0-AAGC 0-AGCA 0-GCAA 0-CAAG 0-GCTT 0-CTTG 0-TTGC 0-TGCT = 0
1-AACT 1-ACTA 0-CTAA 2-TAAC 0-AGTT 2-GTTA 0-TTAG 0-TAGT = 6
0-AACG 0-ACGA 0-CGAA 0-GAAC 0-CGTT 0-GTTC 0-TTCG 0-TCGT = 0
0-AACC 0-ACCA 0-CCAA 0-CAAC 0-GGTT 0-GTTG 0-TTGG 0-TGGT = 0
0-ATAG 1-TAGA 0-AGAT 1-GATA 0-CTAT 0-TATC 0-ATCT 0-TCTA = 2
1-ATAC 1-TACA 4-ACAT 0-CATA 2-GTAT 2-TATG 1-ATGT 4-TGTA = 15
1-ATGG 0-TGGA 2-GGAT 0-GATG 3-CCAT 1-CATC 2-ATCC 0-TCCA = 9
0-ATGC 0-TGCA 0-GCAT 0-CATG = 0
0-ATCG 0-TCGA 0-CGAT 0-GATC = 0
0-AGAC 0-GACA 0-ACAG 0-CAGA 0-GTCT 0-TCTG 0-CTGT 0-TGTC = 0
0-AGTG 0-GTGA 1-TGAG 0-GAGT 0-CACT 0-ACTC 1-CTCA 0-TCAC = 2
0-AGTC 0-GTCA 0-TCAG 0-CAGT 0-GACT 1-ACTG 0-CTGA 1-TGAC = 2
0-AGGT 0-GGTA 1-GTAG 0-TAGG 0-ACCT 1-CCTA 0-CTAC 0-TACC = 2
0-AGGG 0-GGGA 0-GGAG 0-GAGG 0-CCCT 0-CCTC 0-CTCC 0-TCCC = 0
1-AGGC 0-GGCA 0-GCAG 0-CAGG 0-GCCT 0-CCTG 0-CTGC 1-TGCC = 2
0-AGCT 0-GCTA 0-CTAG 0-TAGC = 0
0-AGCG 0-GCGA 0-CGAG 0-GAGC 0-CGCT 0-GCTC 0-CTCG 0-TCGC = 0
0-AGCC 0-GCCA 0-CCAG 0-CAGC 0-GGCT 0-GCTG 0-CTGG 4-TGGC = 4
0-ACGT 0-CGTA 0-GTAC 0-TACG = 0
1-ACGG 0-CGGA 0-GGAC 1-GACG 0-CCGT 0-CGTC 0-GTCC 0-TCCG = 2
0-ACGC 0-CGCA 0-GCAC 0-CACG 0-GCGT 0-CGTG 0-GTGC 0-TGCG = 0
0-ACCG 0-CCGA 0-CGAC 0-GACC 0-CGGT 0-GGTC 0-GTCG 0-TCGG = 0
0-ACCC 0-CCCA 0-CCAC 0-CACC 0-GGGT 0-GGTG 0-GTGG 0-TGGG = 0
0-GGGC 0-GGCG 0-GCGG 0-CGGG 0-GCCC 0-CCCG 1-CCGC 0-CGCC = 1
0-GGCC 0-GCCG 0-CCGG 0-CGGC = 0
----------------------------------------------------------------------------------------------------
----------------------------------------------------------------------------------------------------
Tetra-nucleotide repeats longer than 40 bp (repeated 10 or more times)
0-AAAT 1-AATA 0-ATAA 0-TAAA 0-ATTT 0-TTTA 0-TTAT 0-TATT = 1
0-AAAG 0-AAGA 0-AGAA 0-GAAA 0-CTTT 0-TTTC 0-TTCT 0-TCTT = 0
0-AAAC 0-AACA 0-ACAA 0-CAAA 0-GTTT 0-TTTG 0-TTGT 0-TGTT = 0
0-AATT 0-ATTA 0-TTAA 0-TAAT = 0
0-AATG 0-ATGA 0-TGAA 0-GAAT 0-CATT 0-ATTC 0-TTCA 0-TCAT = 0
0-AATC 0-ATCA 0-TCAA 0-CAAT 0-GATT 0-ATTG 0-TTGA 0-TGAT = 0
0-AAGT 0-AGTA 0-GTAA 0-TAAG 0-ACTT 0-CTTA 0-TTAC 0-TACT = 0
0-AAGG 0-AGGA 0-GGAA 0-GAAG 0-CCTT 0-CTTC 0-TTCC 0-TCCT = 0
0-AAGC 0-AGCA 0-GCAA 0-CAAG 0-GCTT 0-CTTG 0-TTGC 0-TGCT = 0
0-AACT 0-ACTA 0-CTAA 0-TAAC 0-AGTT 0-GTTA 0-TTAG 0-TAGT = 0
0-AACG 0-ACGA 0-CGAA 0-GAAC 0-CGTT 0-GTTC 0-TTCG 0-TCGT = 0
0-AACC 0-ACCA 0-CCAA 0-CAAC 0-GGTT 0-GTTG 0-TTGG 0-TGGT = 0
0-ATAG 0-TAGA 0-AGAT 1-GATA 0-CTAT 0-TATC 0-ATCT 0-TCTA = 1
0-ATAC 0-TACA 0-ACAT 0-CATA 0-GTAT 0-TATG 0-ATGT 0-TGTA = 0
0-ATGG 0-TGGA 0-GGAT 0-GATG 0-CCAT 0-CATC 1-ATCC 0-TCCA = 1
0-ATGC 0-TGCA 0-GCAT 0-CATG = 0
0-ATCG 0-TCGA 0-CGAT 0-GATC = 0
0-AGAC 0-GACA 0-ACAG 0-CAGA 0-GTCT 0-TCTG 0-CTGT 0-TGTC = 0
0-AGTG 0-GTGA 0-TGAG 0-GAGT 0-CACT 0-ACTC 0-CTCA 0-TCAC = 0
0-AGTC 0-GTCA 0-TCAG 0-CAGT 0-GACT 0-ACTG 0-CTGA 0-TGAC = 0
0-AGGT 0-GGTA 0-GTAG 0-TAGG 0-ACCT 0-CCTA 0-CTAC 0-TACC = 0
0-AGGG 0-GGGA 0-GGAG 0-GAGG 0-CCCT 0-CCTC 0-CTCC 0-TCCC = 0
0-AGGC 0-GGCA 0-GCAG 0-CAGG 0-GCCT 0-CCTG 0-CTGC 0-TGCC = 0
0-AGCT 0-GCTA 0-CTAG 0-TAGC = 0
0-AGCG 0-GCGA 0-CGAG 0-GAGC 0-CGCT 0-GCTC 0-CTCG 0-TCGC = 0
0-AGCC 0-GCCA 0-CCAG 0-CAGC 0-GGCT 0-GCTG 0-CTGG 0-TGGC = 0
0-ACGT 0-CGTA 0-GTAC 0-TACG = 0
0-ACGG 0-CGGA 0-GGAC 0-GACG 0-CCGT 0-CGTC 0-GTCC 0-TCCG = 0
0-ACGC 0-CGCA 0-GCAC 0-CACG 0-GCGT 0-CGTG 0-GTGC 0-TGCG = 0
0-ACCG 0-CCGA 0-CGAC 0-GACC 0-CGGT 0-GGTC 0-GTCG 0-TCGG = 0
0-ACCC 0-CCCA 0-CCAC 0-CACC 0-GGGT 0-GGTG 0-GTGG 0-TGGG = 0
0-GGGC 0-GGCG 0-GCGG 0-CGGG 0-GCCC 0-CCCG 0-CCGC 0-CGCC = 0
0-GGCC 0-GCCG 0-CCGG 0-CGGC = 0
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Total repeats longer than 40 bp = 3
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© Division of Biochemical Sciences, National Chemical Laboratory, Pune 411008, INDIA