Tri-Nucleotide Repeats in Genomic Sequences
Tri-Nucleotide Repeats in
C. elegans Chromosome-X complete sequence
Genomic sequence
lcl|chr_X
Position Repeat Coverage Repeat
129878 AAT * 8 22/24 AAT AAT AAT AAT AAT AAT AAA AAA
212078 CAT * 7 19/21 CAT CAT CAT CAT CAC CAT CAC
292302 GAA * 8 22/24 GAA GAA AAA GAA GAA AAA GAA GAA
644804 GAA * 8 22/24 GAA AAA GAA GAA GAA GAA GAA GTA
753173 GAA * 14 39/42 GAA GAA AAA GAA GAA GAA GAA GAA GGA GAA GAA GAT GAA GAA
756107 GAA * 8 22/24 GAA GAA GAA GAA GAA GAT GGA GAA
756548 TCT * 7 19/21 TCT TCT CCT TCT GCT TCT TCT
798502 AGC * 7 19/21 AGC AGC AGC GGC AGC AGC AGA
808273 TCC * 7 19/21 TCC TCC TCC TCC TCC TGC TCT
990869 ACA * 7 19/21 ACA ACA ACA ACA TCA ACA AAA
1048640 CCA * 7 19/21 CCA CCA CCA CCA CCA CTA CCG
1194044 ATC * 8 22/24 ATC ATC ATC ATC ATC ATC ATA ATT
1211658 CCT * 7 19/21 CCT CCT CCT CCT TCG CCT CCT
1258950 AGA * 11 30/33 AGA AAG AGA AGA AGA AGA AGA AGA AGA AGA ACA
1351300 TGA * 7 19/21 TGA CAA TGA TGA TGA TGA TGA
1469341 ATT * 8 23/24 ATT ATT ATT ATT ATT ATT ATT ATA
1550857 AAT * 7 19/21 AAT AAT AAT AAT AAT AAT CTT
1589874 ACT * 7 19/21 ACT ACT AAT ACT ACT ACA ACT
1660833 GAA * 7 19/21 GAA GAA GAC GAA GAA GAC GAA
1828360 ACA * 8 23/24 ACA ACA ACA ACA ACA ACA ACA ACT
1840867 AAG * 7 20/21 AAG ACG AAG AAG AAG AAG AAG
1891599 AAG * 8 22/24 AAG AAT AAG AAG AAG AAG AAG AAA
2108265 ATA * 7 20/21 ATA ATA ATA ATA ATA ATA GTA
2187429 GAC * 7 19/21 GAC GAC GAC GAC GGC GGC GAC
2193995 GAG * 7 20/21 GAG GAG GAG GAG GAG AAG GAG
2258149 GTA * 8 22/24 GTA GAA GTA GGA GTA GTA GTA GTA
2332200 ATA * 7 20/21 ATA ATA ATA GTA ATA ATA ATA
2451771 TGT * 8 22/24 TGT GGT TGT TGT TGT TGT TGT TGA
2482337 TGC * 7 20/21 TGC TGC TGC TGC TGC TGC AGC
2488031 CAC * 7 20/21 CAC CGC CAC CAC CAC CAC CAC
2541564 CTA * 8 22/24 CTA CTA CTA CTA CTA CTT CTA CTT
2559130 CTT * 7 19/21 CTT CTT CTT TTT CTT CTT CAT
2591365 GCC * 7 20/21 GCC GCC GCC TCC GCC GCC GCC
2618668 TTC * 7 19/21 TTC TTC TTC ATC TTC TTC GTC
2687164 AGA * 7 19/21 AGA AGA AGA AAA AGA AGA AGC
2748180 GTG * 7 19/21 GTG GTG GTG GTC GAG GTG GTG
2817041 CAT * 7 19/21 CAT CAT CAT CGT CGT CAT CAT
2845101 CTG * 7 19/21 CTG CTG CTG CTG CTA CTC CTG
2845244 TGC * 7 19/21 TGC TGC TGC TGC TGC TGC ATC
2904978 TGA * 7 19/21 TGA TGA TGA TGG TGA TGA TGT
2917807 TAT * 10 28/30 TAT TTT TAT TAT TAT CAT TAT TAT TAT TAT
2944307 AGA * 7 19/21 AGA CGA CGA AGA AGA AGA AGA
2970284 GAA * 8 22/24 GAA GAA TAA GAA TAA GAA GAA GAA
2970604 GGC * 7 20/21 GGC GGC GGC GGC GGC GGC TGC
3001556 TTG * 10 27/30 TTG TTG TTG TTA TTG TTA TTG TTG TTG TTA
3092217 TAC * 8 22/24 TAC TAC TAC TAC TAC TAC TAT TAA
3092241 TAA * 8 22/24 TAA TAA TAA TAA TAA TAA TAT TCA
3099179 TAA * 11 30/33 TAA TAA TAA TAA TAA CAA TAA TAA TAA TAT TTA
3101159 AAT * 8 22/24 AAT AAT AAA AAT AAA AAT AAT AAT
3102924 ATA * 7 19/21 ATA AGA AAA ATA ATA ATA ATA
3138246 CTT * 12 33/36 CTT CTT CTT CTT CTT CTT CTT CTT CTT TTC CTT CCT
3181636 GAA * 7 19/21 GAA GAA GAA GAA GAA GAA AGA
3221845 AAG * 7 19/21 AAG AAG AAT AAG AGG AAG AAG
3232460 TCT * 7 19/21 TCT TTT TCT TTT TCT TCT TCT
3309227 ATT * 10 27/30 ATT ATT ATT ATT GTT ATT ACT ATT ATT ATG
3348974 ATG * 13 36/39 ATG TGG ATG ATG ATG ATG ATG ATG ATG ATG CTG ATG ATG
3359234 AAT * 8 22/24 AAT AAT AAT ACT AAT AAT AAT AAA
3494084 ATA * 10 27/30 ATA ATA ATA AGA ATA ATA ATA ATA ACA AGA
3555743 TAA * 8 22/24 TAA TAA TAA TAA TAA TAA GAA GAA
3618004 CTT * 7 20/21 CTT CTT CGT CTT CTT CTT CTT
3618041 TCT * 8 22/24 TCT TCT TCT TCT TCT TCG TCT TCA
3692355 CGA * 7 19/21 CGA AGA CGA CGA CGA CGA TGA
3692376 TGA * 8 22/24 TGA TGA TGA TGA TGT TGA TAA TGA
3817077 AGG * 7 19/21 AGG AGA AGG AGG AGG AGA AGG
3881206 AGA * 7 19/21 AGA AGA AGA AGA AGA AGA CGT
3945271 CAC * 7 19/21 CAC CAT CAC CAT CAC CAC CAC
3978182 AAT * 11 30/33 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT TTA
4019411 ACG * 7 19/21 ACG ACG ACG ACG ACT GCG ACG
4058919 TGC * 7 19/21 TGC TGT GGC TGC TGC TGC TGC
4297928 TAA * 11 30/33 TAA TAC AAA TAA TAA TAA TAA TAA TAA TAA TAT
4351649 TCA * 7 19/21 TCA ACA TCA TCA TCT TCA TCA
4368259 GCT * 9 25/27 GCT GCT GCT GCT GCT GCT GTT GCT GAT
4542734 CAA * 7 19/21 CAA CAA CAA CAA CAA CAA AAT
4592871 TCT * 7 19/21 TCT TCT TCT TAT TCT TCC TCT
4635951 CTT * 8 22/24 CTT CTT CTT CTT CTT CTT TTT CCT
4652443 GAA * 7 19/21 GAA GTA GAA GAA AAA GAA GAA
4696044 CTT * 7 19/21 CTT CTT CTT TTT CTT CTC CTT
4788320 TCA * 7 20/21 TCA TCA TCA TCA TCC TCA TCA
4865883 TCA * 7 19/21 TCA TCA TCG TCC TCA TCA TCA
4867316 TCG * 7 19/21 TCG TCG TCG TCG TCT TCG TCT
4880565 AGA * 8 22/24 AGA AGA CGA CGA AGA AGA AGA AGA
4894533 AAC * 8 23/24 AAC AAC AAC AAC AAC AAC AAC AAA
4960344 CTT * 7 20/21 CTT CTT CTT CTT CTT CTT CTG
5077102 AAT * 7 19/21 AAT ACT AAT AAT AAT AAT AAG
5102838 TGC * 7 19/21 TGC TGC TGC TGC TGT CGC TGC
5211808 CTT * 7 19/21 CTT CTG CTT CTT CTT CTT ATT
5259610 AAT * 9 25/27 AAT AAT ATT AAT AGT AAT AAT AAT AAT
5277620 CAC * 7 19/21 CAC CAC CAC CAC CAA CAC CAG
5343423 TTA * 7 19/21 TTA TTA TTA TTT TTA TTA TAA
5403946 TTA * 7 19/21 TTA TTA TTA TTA TTA TTT TTC
5432164 ACC * 7 19/21 ACC ACC ATC ACC ACC ACC ACA
5464006 AGA * 7 19/21 AGA AAA GGA AGA AGA AGA AGA
5464329 CTT * 8 22/24 CTT CTT CGT TTT CTT CTT CTT CTT
5465734 CAT * 9 25/27 CAT GAC CAT CAT CAT CAT CAT CAT CAT
5550905 CCA * 7 19/21 CCA CCA CCA CAA CCA CCA TCA
5711329 TCT * 8 22/24 TCT TTT TCT TCT TCC TCT TCT TCT
5831451 ACA * 8 22/24 ACA ACA ACA ACA AAA ACA ACA ACG
5887485 CTG * 7 19/21 CTG CTG TTG CTG CTG CAG CTG
5915853 ATA * 7 19/21 ATA ATA ACC ATA ATA ATA ATA
5918853 TAA * 7 19/21 TAA TAA TAT TAA TAA TAA TTA
5920611 CAA * 7 19/21 CAA CAA CAA CAA CAA CTA CGA
6004900 GAT * 7 19/21 GAT GAT GAT GAT GAA GAT GAA
6136371 CTC * 7 19/21 CTC CTC GAC CTC CTC CTC CTC
6428854 AAG * 9 25/27 AAG ACG ACG AAG AAG AAG AAG AAG AAG
6496585 ACA * 7 19/21 ACA ACA ACA ACA ACA ACA TGA
6501319 TTC * 7 19/21 TTC TTC TTC TTC TTT TTC TCC
6528079 AAG * 7 19/21 AAG CAG AAG AAG AAG AAG AAA
6541972 GAA * 10 27/30 GAA GAA GAC GAA AAA GAA GAA GAA GAA GAG
6615909 TAT * 8 22/24 TAT TAT TAT TAT TAT TAT TCT TAA
6676084 CTT * 10 27/30 CTT CTT CTT CTT CTT CTT CTT CTT TTC CAT
6764568 GGC * 7 19/21 GGC GGT GGC GGC GGC GGC TGC
7017090 GTG * 8 22/24 GTG GTG GTG GAG GTG GTG GTG GAG
7032873 AAG * 7 19/21 AAG AAG AAA AAG AAG ACG AAG
7033089 GAA * 11 30/33 GAA TAA GAA GAA GAA GAA GAA GAA GAA GGA GGA
7033203 CTA * 8 22/24 CTA CTA CTA CGA CTA CTA TTA CTA
7172854 TCT * 7 19/21 TCT TCT TCT TCA TCC TCT TCT
7215667 AGC * 7 19/21 AGC ACC AGC ACC AGC AGC AGC
7293083 CTT * 11 30/33 CTT CTT CTT CTT CTG CTT CAT CTT CTT TTT CTT
7334366 CTT * 9 25/27 CTT TTT CTT CTT CTT CTT CTT CTT TTT
7391135 AAC * 8 22/24 AAC AAC AAA AAC AAC AAC AAA AAC
7393435 TTG * 7 19/21 TTG TTG TTG TTG TTG TTG TCT
7435114 TCC * 7 19/21 TCC TCC TCT TCC TCC TCC TCT
7592714 CCA * 7 19/21 CCA CAA CAA CCA CCA CCA CCA
7593143 ACC * 7 19/21 ACC ACC ACC ACC ACT ACC ACT
7612420 AAG * 7 20/21 AAG ACG AAG AAG AAG AAG AAG
7617522 AGA * 7 19/21 AGA AGA AGA ATA AGA AGA AGG
7747061 TGA * 8 22/24 TGA TGA TGA TGA TGA CGA TAA TGA
7765568 AGA * 8 22/24 AGA AGA AGA AGG AGA AGA AGA AGC
7766334 TTA * 8 22/24 TTA TCA TTA TTA TTA TGA TTA TTA
7860440 TTC * 9 25/27 TTC GTC TTC TTC TTC TTC TTC GTC TTC
7923680 TTA * 10 27/30 TTA TTA TTA TTA TTA TTA TTA TTA CTC ATA
7930660 TAC * 7 20/21 TAC TAC TAC TAC TAC TAC TAT
7933502 GTT * 7 19/21 GTT GTT GTT GAT GTT TTT GTT
8194420 ATT * 7 19/21 ATT TTC ATT ATT ATT ATT ATT
8224588 AGA * 7 19/21 AGA AGA AGA AGA TGA AGA AGG
8237780 AGA * 7 19/21 AGA AGA AGA AGA AGA AGA CGC
8257104 CAT * 7 19/21 CAT TAA CAT CAT CAT CAT CAT
8438119 TCA * 7 19/21 TCA TCA TCA TCA TCA TAA TCC
8538458 GAG * 7 19/21 GAG GAG GAG GAG GAG GAG TAA
8743715 TCT * 17 47/51 TCT ACT CCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT CCC
8794852 ATA * 7 20/21 ATA ATA ATA ATA ATA ATA AAA
9019568 CTT * 7 19/21 CTT CTC CTT CTT CTT CTC CTT
9131653 TTC * 7 19/21 TTC TTC TTC TAC TTC GTC TTC
9217868 TAT * 7 20/21 TAT TAT TAT TAT TAC TAT TAT
9319329 AAG * 8 22/24 AAG AAC AAG AAG AAC AAG AAG AAG
9323173 AGA * 8 22/24 AGA AGA ACA AGA AGA ACA AGA AGA
9323637 AGA * 7 19/21 AGA AGA ACA AGA AGA ACA AGA
9323861 AAG * 9 25/27 AAG AAG AAC AAG AAG AAG AAT AAG AAG
9361357 ATT * 11 30/33 ATT ATT ATT ATT ATT ATT ATT ATT ATT ACT TAT
9394142 TTG * 7 19/21 TTG TTC TTG TTG TTG TTG TTT
9409984 ATT * 8 23/24 ATT TTT ATT ATT ATT ATT ATT ATT
9511828 ACT * 8 22/24 ACT TCT ACT ACT ACT ACT ACT TCT
9697164 AAG * 7 19/21 AAG AAG AAG AAA AAG AAG ATG
9697810 CTC * 7 19/21 CTC CTC CTT CTC CTC CTC TTC
9900501 ATT * 9 26/27 ATT ATT ATT ATT ATT ATT ATT ATT ATA
10078777 TGT * 8 22/24 TGT TGT TGC TGT TGG TGT TGT TGT
10086801 CCA * 8 22/24 CCA CCA GCT CCA CCA CCA CCA CCA
10122792 TCA * 7 19/21 TCA TCG TCG TCA TCA TCA TCA
10250685 TAA * 7 19/21 TAA TAA TAA GAA TCA TAA TAA
10332878 ATC * 7 20/21 ATC CTC ATC ATC ATC ATC ATC
10333891 TCA * 7 19/21 TCA TCA TCC TCA TCA TCT TCA
10334468 TTA * 8 22/24 TTA TTA TTA TTA ATA TTA TTA TTT
10446796 CGT * 7 20/21 CGT CCT CGT CGT CGT CGT CGT
10496737 ATC * 7 19/21 ATC TTC ATC ATC ATC ATC TTC
10518933 GAT * 7 19/21 GAT GAT GAC GAC GAT GAT GAT
10688696 TGT * 8 22/24 TGT TGT TGC TGC TGT TGT TGT TGT
10688843 TGC * 7 19/21 TGC TGC TGC TGC TGT TGC TGT
10690532 AAG * 7 19/21 AAG AAA AAG AAG AAG ATG AAG
10727777 TTG * 7 19/21 TTG TTG TTG TTG GTA TTG TTG
10808196 TAA * 8 22/24 TAA TAA TAA TAA TTA TAA TAA TGA
10940292 ACG * 7 19/21 ACG AAG ACG TCG ACG ACG ACG
10950025 TCT * 7 19/21 TCT TCA TCT TCT TCT TCT TCA
10998603 TTG * 7 19/21 TTG TTG TTG TTA TAG TTG TTG
11091614 GAG * 7 19/21 GAG GAG GAG GAA GAG GAA GAG
11117711 CTT * 8 22/24 CTT CTT CTT CTT CTT CTT CTC CCT
11166942 TGG * 7 20/21 TGG TGG TGG TGG TGG AGG TGG
11215073 AAG * 9 25/27 AAG AAA AAG AAG AAG AAG AAG AAG GAG
11254275 ATG * 7 19/21 ATG ATG ATG GTG GTG ATG ATG
11258813 TGG * 7 19/21 TGG TGG TGG TGG TGG TGG TCA
11260655 ATT * 7 20/21 ATT ATT ATT ATT ATT ATT GTT
11389381 GGA * 7 19/21 GGA GGA GGA GGT GGA GGT GGA
11389429 CCA * 7 19/21 CCA CCC CCA CCA CCA CCA ACA
11577595 ATT * 7 19/21 ATT TTG ATT ATT ATT ATT ATT
11790959 TCT * 7 20/21 TCT TCT TCT TCT TCT TCT ACT
11942271 GAT * 7 19/21 GAT GAT GAA GAA GAT GAT GAT
11947536 GAA * 7 19/21 GAA AAA GAA GAA GAT GAA GAA
11975156 TCA * 8 23/24 TCA TCA TCA TCA TCA TCA TCA TCG
12090985 ATT * 11 30/33 ATT GTT ATT ATT ATT ATT ATT ATG ATT ATG ATT
12155219 TTC * 7 19/21 TTC TTC TTC TTC TTC GTC GTC
12356424 CGA * 7 20/21 CGA CGA CGA CGA CGC CGA CGA
12382106 TTC * 7 20/21 TTC TCC TTC TTC TTC TTC TTC
12577060 GGA * 7 19/21 GGA GGT GGA GGA GGA GGT GGA
12651146 AAG * 7 19/21 AAG AAG AAG AAG AAG AGA AAG
12655032 TCT * 8 23/24 TCT TCT TCT TCT TCT TCT TCT TCG
12656714 CAG * 7 20/21 CAG CAG TAG CAG CAG CAG CAG
12727580 GTC * 7 19/21 GTC GTC GAC GTC GTC GGC GTC
12797836 AAT * 7 20/21 AAT AAT AAT ACT AAT AAT AAT
12803543 ACC * 7 19/21 ACC TCC ACC ACC ACC GCC ACC
12897720 AAT * 9 25/27 AAT AAT AAT AAT AAT AAT AAT AAG AAA
12910142 GAT * 7 19/21 GAT GAT GAT GAT GAA GAT GAA
12920913 AAC * 14 38/42 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAT AAT ACG
12935288 CAC * 7 19/21 CAC CAC CAC CTC CAC CGC CAC
12957419 CAC * 10 27/30 CAC AAC CAC TAC CAC CAC CAC CAC CAC CAT
12966842 AAT * 8 22/24 AAT AAT ATT AAT AAT AAT AAG AAT
12983376 TTA * 8 22/24 TTA TTA TTT ATA TTA TTA TTA TTA
13039559 CAC * 7 19/21 CAC CTC CAC CAC CAC CAC GAC
13144567 TAA * 7 19/21 TAA TAT TAA TAT TAA TAA TAA
13220156 CCT * 7 19/21 CCT CCA CCG CCT CCT CCT CCT
13220188 TCC * 8 22/24 TCC TCC ACC TCC TCC TGC TCC TCC
13285524 TTC * 17 46/51 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TCC CCT ATC
13345813 CAA * 7 19/21 CAA CAG CAA CAG CAA CAA CAA
13372848 TAA * 7 20/21 TAA TAA TAA TAA TAA TAA TGA
13383835 AGA * 7 19/21 AGA AAA AGA AGG AGA AGA AGA
13384206 GAA * 7 19/21 GAA AAA GAA GAA GAA GAA GAC
13398655 GAA * 8 22/24 GAA GAA GAT GAA GAA GAT GAA GAA
13447088 CAC * 8 22/24 CAC CAC CAC CAC CTC CAC CAG CAC
13465055 CGG * 7 19/21 CGG CGG CGG CGG CGG CGA CGT
13523555 TTC * 7 19/21 TTC TTA TTC TTC TTC TTC TTT
13599057 GAA * 7 19/21 GAA GAA GAG GAA GAA GAA GAT
13609956 TCA * 7 19/21 TCA TCA TCA TCA TCA CCT TCA
13673399 GAA * 7 19/21 GAA GAA GAA GAT GAA GAA AAA
13690755 TCT * 7 20/21 TCT TCT CCT TCT TCT TCT TCT
13712887 AAC * 8 22/24 AAC AAC AAC AAC AAC AAC ACC AAT
13781782 CAT * 7 19/21 CAT CAT CAC CAT CAT AAT CAT
13785860 TTA * 7 19/21 TTA TTA TTA TTA TTA TTA AAA
13804875 TAT * 7 19/21 TAT TAT TAT TAT TAT TAT TGA
13807866 AGA * 8 22/24 AGA AGA ATA AGA AGA AGA AGA AGG
13845012 TTC * 7 19/21 TTC TTA TTC TTC TTC ATC TTC
13937065 TGC * 7 19/21 TGC TGC TGT TGC TGC TGT TGC
14018642 TAA * 7 19/21 TAA AAA TAA TAA TAA TAA AAA
14042456 TTG * 8 22/24 TTG TTG TTG TTG TTG TTG GTG GTG
14045560 TCT * 11 30/33 TCT TCT TCT TAT TCT TCT TCT TCT TCA TCT TAT
14083757 TTA * 7 19/21 TTA TTA TTT TTA TTA TTG TTA
14112559 ATG * 7 19/21 ATG ATC ATG TTG ATG ATG ATG
14154433 ATG * 7 19/21 ATG ATC ATG TTG ATG ATG ATG
14195504 TGA * 7 19/21 TGA CGA TGA TGA TGA TGA CGA
14197181 AAC * 8 22/24 AAC AAC AAC AAC AAC AAT AAC AAT
14312218 TTC * 7 19/21 TTC TTC TTC ATC TTC TTC ATC
14328891 TAT * 7 19/21 TAT TAT TAA TAT TAT TGT TAT
14350878 AAG * 8 22/24 AAG AAG TGG AAG AAG AAG AAG AAG
14350920 AAG * 7 19/21 AAG AAG AAG TAG TAG AAG AAG
14351584 AGA * 8 22/24 AGA ACC AGA AGA AGA AGA AGA AGA
14393139 TGA * 9 25/27 TGA TGA TGA TGA TGA TGG TGT TGA TGA
14478824 TTC * 7 19/21 TTC TTC TTC ATC TTC TTC ATC
14495495 TAT * 7 19/21 TAT TAT TAA TAT TAT TGT TAT
14517478 AAG * 8 22/24 AAG AAG TGG AAG AAG AAG AAG AAG
14517520 AAG * 7 19/21 AAG AAG AAG TAG TAG AAG AAG
14518184 AGA * 8 22/24 AGA ACC AGA AGA AGA AGA AGA AGA
14559733 TGA * 9 25/27 TGA TGA TGA TGA TGA TGG TGT TGA TGA
14568204 AAT * 7 19/21 AAT AAT AAC AAT ATT AAT AAT
14580647 TCG * 7 19/21 TCG ACG TCG TAG TCG TCG TCG
14582810 ACC * 8 22/24 ACC ACC ACC ACC ACT ACC ACA ACC
14635852 AGA * 7 19/21 AGA AGA AGA AGA CGA AGA AGG
14648472 GAG * 8 22/24 GAG GCG GAG GAG GAG AAG GAG GAG
14649815 ATA * 7 20/21 ATA ATA ATA ATA ATA ATA AGA
14652799 AAG * 8 22/24 AAG AAG CAA AAG AAG AAG AAG AAG
14728665 TGC * 7 19/21 TGC TGC TGC TGC TGC GGC TCC
14809571 TGA * 7 19/21 TGA TGG TGA TGA TGA TGA TGG
14819526 TGC * 7 19/21 TGC TGT TGC TGC TGT TGC TGC
14819812 CTG * 7 19/21 CTG CTG ATA CTG CTG CTG CTG
14883007 GGA * 9 25/27 GGA GGA GGA GGA GGA GGA GGA GGA CAA
14910609 TCA * 12 33/36 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA GGC
14939185 TGG * 9 25/27 TGG TGA TGC TGG TGG TGG TGG TGG TGG
14994360 AAG * 8 22/24 AAG AAG AAG AAC AAG AAG AAG CAG
14994437 GAA * 17 46/51 GAA GAA GGC GAA GAA GAA GAA GAA GAA GAA GAA GAA GCA GAA GAA GGA CAA
15008979 TTA * 11 30/33 TTA TTA TTA TTA TTA TTA TTA TGA TTA TCA TTT
15020047 TAT * 7 19/21 TAT TAT TAT TAG TAT TAG TAT
15113165 TCT * 7 19/21 TCT TCT TCT TCT TCT TCC TCA
15170872 TAA * 7 19/21 TAA TAA CTA TAA TAA TAA TAA
15180088 AAT * 8 22/24 AAT AAT AAT AAT ATT AAT AAT AAA
15200495 GAG * 7 19/21 GAG GAG GAG GAG GAG GAG GGC
15243192 AAT * 7 19/21 AAT AAT AAT AAT AAC AGT AAT
15247543 GTT * 8 23/24 GTT GTT GTT GTT GTT GTT GTT TTT
15253788 TGC * 10 28/30 TGC TGC TAC TGC TGC TGC TGC TGC TGC TAC
15269815 AGA * 8 22/24 AGA AGA AGA AGA AGA CGA CGA AGA
15342959 GAA * 12 33/36 GAA GAA GAA AAA GAA GAA GAA GAA GGA GAA GGA GAA
15355116 GAA * 8 22/24 GAA GAA GAA GAA AAG GAA GAA GAA
15364687 CTT * 8 23/24 CTT TTT CTT CTT CTT CTT CTT CTT
15364821 CTT * 7 19/21 CTT CTT CTT CTT CTT CTC CTC
15364853 CTT * 7 19/21 CTT CTT CTT CTT CAT CTG CTT
15364907 GTC * 7 19/21 GTC GCA GTC GTC GTC GTC GTC
15389979 CTT * 7 19/21 CTT CGT CTT TTT CTT CTT CTT
15439832 ATT * 7 20/21 ATT ATT ATT ATT ATT ATT AAT
15483553 TCA * 8 23/24 TCA TCA TCA TCA TCG TCA TCA TCA
15483892 GCT * 7 19/21 GCT GCT GCT GCT CCT GCT GGT
15484901 GCT * 8 23/24 GCT GCT GCT GCT GCT GCT GCT GGT
15489424 TCA * 10 28/30 TCA TCA TCA TCA TCA TCA TCT TTA TCA TCA
15498256 GAA * 8 23/24 GAA TAA GAA GAA GAA GAA GAA GAA
15504462 CTT * 7 19/21 CTT CTT CTT CTT CTT CCT TTT
15514522 ATG * 7 20/21 ATG TTG ATG ATG ATG ATG ATG
15522405 GAA * 9 25/27 GAA GAA GAA AAA GAA GAA GAA GAA AAA
15551539 TGA * 7 19/21 TGA TGA TGA TGA CGA CGA TGA
15551561 GAT * 7 19/21 GAT GAC GAT GAT GAT GAT GGT
15551627 GAT * 7 19/21 GAT GAT GGA GAT GAT GAT GAT
15551664 ATG * 7 19/21 ATG ATG ATG ATG AAG AAG ATG
15552013 GAT * 7 19/21 GAT GAT GAA GAC GAT GAT GAT
15552073 GAT * 8 22/24 GAT GAT GAT GAG GAT GAT GTT GAT
15606901 ATA * 8 22/24 ATA ATA ATA ATC ATA ATA ATT ATA
15668076 CAG * 8 22/24 CAG CAA CAT CAG CAG CAG CAG CAG
15689389 GAA * 7 20/21 GAA GAA GAA GAA GAA GAG GAA
15689815 GAG * 7 19/21 GAG GAA GAG GAG GAG GAA GAG
15693266 GAA * 7 19/21 GAA GAA GAA GAA GAA GAA TTA
15712967 TGG * 7 19/21 TGG TGG TGG TGG TGG TTG AGG
15732446 CCA * 7 19/21 CCA CCA CCG CCA CCA CCA ACA
15793337 TTA * 7 19/21 TTA TTA TTA TTG TCA TTA TTA
15821728 ACT * 7 19/21 ACT ACT AAT ACT ATT ACT ACT
15896029 TTC * 7 19/21 TTC TTC TTC TTC TTC TTT TTT
15958064 CAA * 7 19/21 CAA CAA CTA CAA CAA TAA CAA
15992217 TCT * 10 27/30 TCT TCT TCT TCT TCT TCT TCA TCT TCT TTA
16019547 TGC * 10 27/30 TGC TGC TGT TGC TGC TGC TGC TGC TGA TGA
16058250 TTC * 8 22/24 TTC TTC TTC TTC TTC ATC ATC TTC
16130465 AAG * 7 19/21 AAG AAG AAG CAA AAG AAG AAG
16282575 GAA * 8 23/24 GAA GAA GAT GAA GAA GAA GAA GAA
16282635 CCG * 7 19/21 CCG CCG CCG CCG ACG CCG CTG
16288480 CGC * 8 23/24 CGC CGC CGT CGC CGC CGC CGC CGC
16291546 ACT * 14 38/42 ACT AGT ACT ACT ACT ACT ACT ACT ACT ACT ACT ACA ACA TCT
16317462 ATA * 7 19/21 ATA ATA AAA ATA ATA AAA ATA
16409853 CTG * 7 19/21 CTG AAG CTG CTG CTG CTG CTG
16451787 GAG * 8 22/24 GAG GAG GAG GAG GAG GAG CAG GAT
16467274 AAG * 8 22/24 AAG GAG AAG ATG AAG AAG AAG AAG
16479305 ATA * 7 20/21 ATA ATA ATA ATG ATA ATA ATA
16491858 CAG * 11 31/33 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CCC
16506059 TGA * 11 31/33 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TCG
16532634 GGC * 7 19/21 GGC GGC GGC GGC GGC GGT GGA
16534344 AAG * 9 25/27 AAG CAG AAA AAG AAG AAG AAG AAG AAG
16537258 AAG * 7 19/21 AAG AAG AAG AAG AAG AAG GTG
16545880 TGG * 8 22/24 TGG TTG TGG TTG TGG TGG TGG TGG
16558757 CAT * 7 19/21 CAT CAT CAT CAT CAC CAT CAC
16592202 CTT * 7 19/21 CTT CAC CTT CTT CTT CTT CTT
16669051 ATA * 11 31/33 ATA ATA ATA ATA ATA ATA ACA ATA ACA ATA ATA
16687736 TGG * 9 25/27 TGG TGG TGG TGG AGG TGG TGG GGG TGG
16763914 ACG * 10 27/30 ACG ACG ACG ACG ACG ACA ACG ACG ACA ACA
16764361 ACG * 11 30/33 ACG GCA ACG ACG ACG ACG ACG ACG ACG ACG AGG
16764556 ACG * 7 19/21 ACG GCA ACG ACG ACG ACG ACG
16764736 ACG * 7 19/21 ACG GCA ACG ACG ACG ACG ACG
16845127 CCA * 7 19/21 CCA CCA CCA CCA CCA CAG CCA
16850550 CAA * 11 31/33 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA TCA
16853837 GTC * 7 19/21 GTC GTT GTG GTC GTC GTC GTC
16933198 TCT * 7 19/21 TCT GTT TCT TCT TCT TCT TCT
17061000 GCT * 7 19/21 GCT GCT GCT GCT GTT GTT GCT
17063493 CCT * 7 19/21 CCT CCT TCT CCT CCT CTT CCT
17185850 AAT * 7 21/21 AAT AAT AAT AAT AAT AAT AAT
17326039 ATG * 8 23/24 ATG ATA ATG ATG ATG ATG ATG ATG
17411090 GAA * 7 19/21 GAA GAA AAA GAA GAA GAA GAT
17514644 TTC * 11 30/33 TTC ATC TTC TTC TTC TTC TTC TTC CTC TTC CTC
17528625 GAA * 7 19/21 GAA GAA GAA AAA GAA GAA GAG
17575921 GAA * 7 20/21 GAA GAA GAA GAA GAA GAA GAG
17582739 AAG * 16 44/48 AAG AAG ACG GAG AAG AAG AAG AAG AAG AAG AAG AAA AAG AAG AAG AAA
17585545 ATT * 8 22/24 ATT ATT ATT ATT ATT ATC ATT ATA
-----------------------------------------------------------------------------------------
Total sequence length......................... 17624844
Minimum Tri-Nucleotide repeat units........... 7
Total number of repeats detected.............. 349
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 14 13 1 0 0 0 0 0 0 0 0 0 0
AAG 24 23 0 0 1 0 0 0 0 0 0 0 0
AAC 5 4 0 1 0 0 0 0 0 0 0 0 0
ATA 11 9 2 0 0 0 0 0 0 0 0 0 0
ATT 11 8 3 0 0 0 0 0 0 0 0 0 0
ATG 7 6 0 1 0 0 0 0 0 0 0 0 0
ATC 3 3 0 0 0 0 0 0 0 0 0 0 0
AGA 18 17 1 0 0 0 0 0 0 0 0 0 0
AGG 1 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 2 0 0 0 0 0 0 0 0 0 0 0
ACA 4 4 0 0 0 0 0 0 0 0 0 0 0
ACT 4 3 0 1 0 0 0 0 0 0 0 0 0
ACG 6 4 2 0 0 0 0 0 0 0 0 0 0
ACC 4 4 0 0 0 0 0 0 0 0 0 0 0
TAA 11 9 2 0 0 0 0 0 0 0 0 0 0
TAT 7 6 1 0 0 0 0 0 0 0 0 0 0
TAC 2 2 0 0 0 0 0 0 0 0 0 0 0
TTA 10 8 2 0 0 0 0 0 0 0 0 0 0
TTG 6 5 1 0 0 0 0 0 0 0 0 0 0
TTC 14 12 1 0 1 0 0 0 0 0 0 0 0
TGA 10 9 1 0 0 0 0 0 0 0 0 0 0
TGT 3 3 0 0 0 0 0 0 0 0 0 0 0
TGG 6 6 0 0 0 0 0 0 0 0 0 0 0
TGC 10 8 2 0 0 0 0 0 0 0 0 0 0
TCA 11 9 2 0 0 0 0 0 0 0 0 0 0
TCT 15 12 2 0 1 0 0 0 0 0 0 0 0
TCG 2 2 0 0 0 0 0 0 0 0 0 0 0
TCC 3 3 0 0 0 0 0 0 0 0 0 0 0
GAA 26 21 3 1 1 0 0 0 0 0 0 0 0
GAT 8 8 0 0 0 0 0 0 0 0 0 0 0
GAG 7 7 0 0 0 0 0 0 0 0 0 0 0
GAC 1 1 0 0 0 0 0 0 0 0 0 0 0
GTA 1 1 0 0 0 0 0 0 0 0 0 0 0
GTT 2 2 0 0 0 0 0 0 0 0 0 0 0
GTG 2 2 0 0 0 0 0 0 0 0 0 0 0
GTC 3 3 0 0 0 0 0 0 0 0 0 0 0
GGA 3 3 0 0 0 0 0 0 0 0 0 0 0
GGC 3 3 0 0 0 0 0 0 0 0 0 0 0
GCT 4 4 0 0 0 0 0 0 0 0 0 0 0
GCC 1 1 0 0 0 0 0 0 0 0 0 0 0
CAA 5 4 1 0 0 0 0 0 0 0 0 0 0
CAT 6 6 0 0 0 0 0 0 0 0 0 0 0
CAG 3 2 1 0 0 0 0 0 0 0 0 0 0
CAC 7 6 1 0 0 0 0 0 0 0 0 0 0
CTA 2 2 0 0 0 0 0 0 0 0 0 0 0
CTT 19 16 3 0 0 0 0 0 0 0 0 0 0
CTG 4 4 0 0 0 0 0 0 0 0 0 0 0
CTC 2 2 0 0 0 0 0 0 0 0 0 0 0
CGA 2 2 0 0 0 0 0 0 0 0 0 0 0
CGT 1 1 0 0 0 0 0 0 0 0 0 0 0
CGG 1 1 0 0 0 0 0 0 0 0 0 0 0
CGC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 7 7 0 0 0 0 0 0 0 0 0 0 0
CCT 3 3 0 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
14 AAT + 11 ATA + 11 TAA + 11 ATT + 10 TTA + 7 TAT = 64
24 AAG + 18 AGA + 26 GAA + 19 CTT + 14 TTC + 15 TCT = 116
5 AAC + 4 ACA + 5 CAA + 2 GTT + 6 TTG + 3 TGT = 25
7 ATG + 10 TGA + 8 GAT + 6 CAT + 3 ATC + 11 TCA = 45
0 AGT + 1 GTA + 0 TAG + 4 ACT + 2 CTA + 2 TAC = 9
1 AGG + 3 GGA + 7 GAG + 3 CCT + 2 CTC + 3 TCC = 19
2 AGC + 0 GCA + 3 CAG + 4 GCT + 4 CTG + 10 TGC = 23
6 ACG + 2 CGA + 1 GAC + 1 CGT + 3 GTC + 2 TCG = 15
4 ACC + 7 CCA + 7 CAC + 0 GGT + 2 GTG + 6 TGG = 26
3 GGC + 0 GCG + 1 CGG + 1 GCC + 1 CCG + 1 CGC = 7
-----------------------------------------------------------------------------------------
-----------------------------------------------------------------------------------------
Tri-nucleotide repeats in C. elegans Chromosome-X complete sequence
Minimum tri-nucleotide repeating units = 7 (allowing 10% mismatch)
Total 1 sequences searched with a total of 17624844 bp length
Total 349 repeats covering 7533 / 8223 base pairs
Length distribution of all tri-nucleotide repeats
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
no. of repeat-units 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 >=40
total repeats 212 80 17 13 16 3 1 3 0 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Length distribution of all tri-nucleotide repeats
No. of repeat units> 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
total repeats--> 309 32 4 4 0 0 0 0 0 0 0 0
AAT 13 1 0 0 0 0 0 0 0 0 0 0
AAG 23 0 0 1 0 0 0 0 0 0 0 0
AAC 4 0 1 0 0 0 0 0 0 0 0 0
ATA 9 2 0 0 0 0 0 0 0 0 0 0
ATT 8 3 0 0 0 0 0 0 0 0 0 0
ATG 6 0 1 0 0 0 0 0 0 0 0 0
ATC 3 0 0 0 0 0 0 0 0 0 0 0
AGA 17 1 0 0 0 0 0 0 0 0 0 0
AGG 1 0 0 0 0 0 0 0 0 0 0 0
AGC 2 0 0 0 0 0 0 0 0 0 0 0
ACA 4 0 0 0 0 0 0 0 0 0 0 0
ACT 3 0 1 0 0 0 0 0 0 0 0 0
ACG 4 2 0 0 0 0 0 0 0 0 0 0
ACC 4 0 0 0 0 0 0 0 0 0 0 0
TAA 9 2 0 0 0 0 0 0 0 0 0 0
TAT 6 1 0 0 0 0 0 0 0 0 0 0
TAC 2 0 0 0 0 0 0 0 0 0 0 0
TTA 8 2 0 0 0 0 0 0 0 0 0 0
TTG 5 1 0 0 0 0 0 0 0 0 0 0
TTC 12 1 0 1 0 0 0 0 0 0 0 0
TGA 9 1 0 0 0 0 0 0 0 0 0 0
TGT 3 0 0 0 0 0 0 0 0 0 0 0
TGG 6 0 0 0 0 0 0 0 0 0 0 0
TGC 8 2 0 0 0 0 0 0 0 0 0 0
TCA 9 2 0 0 0 0 0 0 0 0 0 0
TCT 12 2 0 1 0 0 0 0 0 0 0 0
TCG 2 0 0 0 0 0 0 0 0 0 0 0
TCC 3 0 0 0 0 0 0 0 0 0 0 0
GAA 21 3 1 1 0 0 0 0 0 0 0 0
GAT 8 0 0 0 0 0 0 0 0 0 0 0
GAG 7 0 0 0 0 0 0 0 0 0 0 0
GAC 1 0 0 0 0 0 0 0 0 0 0 0
GTA 1 0 0 0 0 0 0 0 0 0 0 0
GTT 2 0 0 0 0 0 0 0 0 0 0 0
GTG 2 0 0 0 0 0 0 0 0 0 0 0
GTC 3 0 0 0 0 0 0 0 0 0 0 0
GGA 3 0 0 0 0 0 0 0 0 0 0 0
GGC 3 0 0 0 0 0 0 0 0 0 0 0
GCT 4 0 0 0 0 0 0 0 0 0 0 0
GCC 1 0 0 0 0 0 0 0 0 0 0 0
CAA 4 1 0 0 0 0 0 0 0 0 0 0
CAT 6 0 0 0 0 0 0 0 0 0 0 0
CAG 2 1 0 0 0 0 0 0 0 0 0 0
CAC 6 1 0 0 0 0 0 0 0 0 0 0
CTA 2 0 0 0 0 0 0 0 0 0 0 0
CTT 16 3 0 0 0 0 0 0 0 0 0 0
CTG 4 0 0 0 0 0 0 0 0 0 0 0
CTC 2 0 0 0 0 0 0 0 0 0 0 0
CGA 2 0 0 0 0 0 0 0 0 0 0 0
CGT 1 0 0 0 0 0 0 0 0 0 0 0
CGG 1 0 0 0 0 0 0 0 0 0 0 0
CGC 1 0 0 0 0 0 0 0 0 0 0 0
CCA 7 0 0 0 0 0 0 0 0 0 0 0
CCT 3 0 0 0 0 0 0 0 0 0 0 0
CCG 1 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes in all sequences
14 AAT + 11 ATA + 11 TAA + 11 ATT + 10 TTA + 7 TAT = 64
24 AAG + 18 AGA + 26 GAA + 19 CTT + 14 TTC + 15 TCT = 116
5 AAC + 4 ACA + 5 CAA + 2 GTT + 6 TTG + 3 TGT = 25
7 ATG + 10 TGA + 8 GAT + 6 CAT + 3 ATC + 11 TCA = 45
0 AGT + 1 GTA + 0 TAG + 4 ACT + 2 CTA + 2 TAC = 9
1 AGG + 3 GGA + 7 GAG + 3 CCT + 2 CTC + 3 TCC = 19
2 AGC + 0 GCA + 3 CAG + 4 GCT + 4 CTG + 10 TGC = 23
6 ACG + 2 CGA + 1 GAC + 1 CGT + 3 GTC + 2 TCG = 15
4 ACC + 7 CCA + 7 CAC + 0 GGT + 2 GTG + 6 TGG = 26
3 GGC + 0 GCG + 1 CGG + 1 GCC + 1 CCG + 1 CGC = 7
-----------------------------------------------------------------------------------------
Frequency distribution of repeats longer than 40 bp
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
1 AAG + 0 AGA + 2 GAA + 0 CTT + 1 TTC + 1 TCT = 5
1 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 1 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 0
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Sequence-wise distribution of tri-nucleotide repeats
-----------------------------------------------------------------------------------------
Total Repeats-longer Sequence Number
Repeats than 40 bp 1
-------------------------------------------
AAT 14 0 14
AAG 24 1 24
AAC 5 1 5
ATA 11 0 11
ATT 11 0 11
ATG 7 0 7
ATC 3 0 3
AGA 18 0 18
AGG 1 0 1
AGC 2 0 2
ACA 4 0 4
ACT 4 1 4
ACG 6 0 6
ACC 4 0 4
TAA 11 0 11
TAT 7 0 7
TAC 2 0 2
TTA 10 0 10
TTG 6 0 6
TTC 14 1 14
TGA 10 0 10
TGT 3 0 3
TGG 6 0 6
TGC 10 0 10
TCA 11 0 11
TCT 15 1 15
TCG 2 0 2
TCC 3 0 3
GAA 26 2 26
GAT 8 0 8
GAG 7 0 7
GAC 1 0 1
GTA 1 0 1
GTT 2 0 2
GTG 2 0 2
GTC 3 0 3
GGA 3 0 3
GGC 3 0 3
GCT 4 0 4
GCC 1 0 1
CAA 5 0 5
CAT 6 0 6
CAG 3 0 3
CAC 7 0 7
CTA 2 0 2
CTT 19 0 19
CTG 4 0 4
CTC 2 0 2
CGA 2 0 2
CGT 1 0 1
CGG 1 0 1
CGC 1 0 1
CCA 7 0 7
CCT 3 0 3
CCG 1 0 1
-------------------------------------------
349 7
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© Division of Biochemical Sciences, National Chemical Laboratory, Pune 411008, INDIA