Tetra-Nucleotide Repeats in Genomic Sequences
Tetra-Nucleotide Repeats in
C. elegans Chromosome-V complete sequence
Genomic sequence...
lcl|chr_V
Position Repeat Coverage Repeat
39486 ACCT * 5 18/20 ACCT ACCT AACT GCCT ACCT
39508 CTAC * 5 18/20 CTAC CTAT CTAC CTAT CTAC
44640 GCAG * 5 18/20 GCAG GCAG GCAG GCAG GCCT
51818 AAAC * 8 29/32 AAAC AAAC AAAC AAGC AAAT AAAC AAAC AGAC
51852 GCAG * 5 18/20 GCAG GCAG GCAG GGAG GAAG
51906 AGGC * 5 18/20 AGGC AGAT AGGC AGGC AGGC
52156 TAGG * 5 18/20 TAGG CAGG TAGG CAGG TAGG
52422 AACT * 5 18/20 AACT AACT AACT AACT AAAG
69885 AACA * 5 19/20 AACA AACA AACA GACA AACA
101183 AGGC * 5 18/20 AGGC ACGT AGGC AGGC AGGC
106220 AGGC * 5 19/20 AGGC AGGC AGGT AGGC AGGC
108407 TAAA * 5 18/20 TAAA TAAA TAAA TGAA TGAA
118929 TGCC * 5 18/20 TGCC TGCC TGCC TGCC TTCA
124010 ATGG * 5 18/20 ATGG TTGG ATGG ATGG ATTG
243210 TTTG * 5 18/20 TTTG TTTG TTTG TTTA TTCG
286748 TAAG * 6 22/24 TAAG TAAG TAAG TATC TAAG TAAG
319491 CCTA * 6 22/24 CCTA CCTA CCTG GCTA CCTA CCTA
320883 AATT * 6 22/24 AATT AATT AATT AATT AATC AATA
355446 TAAG * 6 22/24 TAAG TAAG TAAG TAAG TAAG TATA
356330 CCTA * 5 18/20 CCTA CCAA CCTA CCTA CCAA
358490 TACA * 5 18/20 TACA TACA TACA TGCC TACA
387103 CTGC * 8 29/32 CTGC CTGC CTGC CTGC CTGC CTGC CTAC CGTC
392313 TAAT * 5 18/20 TAAT TAAA TAAT TTAT TAAT
408648 AATA * 7 26/28 AATA AATA GATA AATA AATA AATA AAAA
420157 GTAG * 5 18/20 GTAG TTAG GCAG GTAG GTAG
420442 CAGG * 6 22/24 CAGG CAGG CAGG CACG TAGG CAGG
585177 AAAT * 7 27/28 AAAT AAAT AAAT AAAT AAAT AAAT AAAA
642991 CCTA * 5 18/20 CCTA CCTG CCTA CCTA ACTA
706959 CCTA * 7 26/28 CCTA CCTA CCTA CCTA ACTA CCTA CCAA
882943 CAGG * 5 18/20 CAGG TAGG CAGG CAGG CAAG
888509 CTAC * 5 18/20 CTAC CTAC ATAC CTGC CTAC
1005376 AGGC * 6 22/24 AGGC AGGC ACGT AGGC AGGC AGGC
1025973 GCAG * 7 27/28 GCAG GCAG GCAG GCAG GCAG GCAG GCAA
1032285 TCTT * 5 18/20 TCTT TTTT TCTT TCTC TCTT
1075989 CATA * 6 22/24 CATA CATC CATA CATA CATA CATT
1104926 TTAA * 5 19/20 TTAA TTAA TTAA TTAA TTAT
1116365 TACT * 6 23/24 TACT TACT TACT TACT TACT TAGT
1152028 GTCA * 5 18/20 GTCA GTCA TTCA GTCA CTCA
1216290 CCTA * 5 18/20 CCTA CCTA CCTA CGTG CCTA
1363664 AAAT * 5 18/20 AAAT TAAT AAAA AAAT AAAT
1445052 TAAG * 6 22/24 TAAG TAAC TAAG TAAG TAAG TAAC
1610097 ATTT * 5 18/20 ATTT ATTC ATTT ATTT TTTT
1654912 TTTA * 9 33/36 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTT AATA
1684778 AAAT * 6 23/24 AAAT AAAT AAAT AAAT AAAT AAAA
1718987 AATT * 6 22/24 AATT AATT AATT AATT AAAT AATA
1787683 TATT * 5 18/20 TATT TATT TTAT TATT TATT
1831860 TTTA * 5 18/20 TTTA TATA TTTA TATA TTTA
1985194 CCTG * 5 18/20 CCTG CCTG CCTG CCTG CATA
1988674 GTAG * 5 18/20 GTAG GCAG GTAG GTAG GCAG
2051095 CATG * 5 18/20 CATG CCTG CATG CCTG CATG
2329295 AGGT * 5 18/20 AGGT AGGT AGGT ACGT AGGC
2330887 GTAG * 63 228/252 GTAG GTAG GTAG GTAG GCAG GCAG GTAG GTAG GTAG GTAG GTAG GTAG GCAG GCAG GTAG GTAG ATAG TTAG GTAG GTAG GTAG GTAG GTAG GTAG GTAG GTAG GTAG GTAG GTAG GTAG GTAG GTAG GTAG GTAG GTAG GTAG GTAG GTAG GTAG GTAG GCAG GTAG GTAG GTAG GTAG GTAC GTAG GTAG GTGG GTAG GTAC GTAA GTAG GTAC GTTG GTAG GTAC ATAG CTAG GCAG GCAT GAGG TAGG
2331154 AGGT * 5 18/20 AGGT AGGT AAGT AGGT AGGC
2331277 CTGC * 6 22/24 CTGC CTGC CTAC CTGT CTGC CTGC
2437574 AGGT * 5 18/20 AGGT AGGT AGGT ACGT AGGC
2439166 GTAG * 63 228/252 GTAG GTAG GTAG GTAG GCAG GCAG GTAG GTAG GTAG GTAG GTAG GTAG GCAG GCAG GTAG GTAG ATAG TTAG GTAG GTAG GTAG GTAG GTAG GTAG GTAG GTAG GTAG GTAG GTAG GTAG GTAG GTAG GTAG GTAG GTAG GTAG GTAG GTAG GTAG GTAG GCAG GTAG GTAG GTAG GTAG GTAC GTAG GTAG GTGG GTAG GTAC GTAA GTAG GTAC GTTG GTAG GTAC ATAG CTAG GCAG GCAT GAGG TAGG
2439433 AGGT * 5 18/20 AGGT AGGT AAGT AGGT AGGC
2439556 CTGC * 6 22/24 CTGC CTGC CTAC CTGT CTGC CTGC
2513077 CTGC * 6 22/24 CTGC CTGA CTGC CTGC CTAC CTGC
2532577 ATAA * 5 18/20 ATAA ATAA ATAA ATAG ACAA
2559905 AAGA * 5 18/20 AAGA ATGA AAAA AAGA AAGA
2818342 TATT * 6 22/24 TATT TATT TATT TATT TAAT TAAT
2818373 TATT * 6 22/24 TATT TATT TATT TATT TAAT TAAT
2818404 TATT * 6 22/24 TATT TATT TATT TATT TAAT TAAT
3052171 CAAA * 5 18/20 CAAA CAAA AAAA CAAA AAAA
3081950 CCTG * 5 18/20 CCTG CCTA CCTG CCTG CCTA
3102896 GCCT * 5 18/20 GCCT TCCT GCCT GCCT GGCT
3359373 CAGA * 6 22/24 CAGA CAGA CAGA CAGA CATA CAAA
3388268 TTAT * 6 22/24 TTAT TTAT TCAT TTTT TTAT TTAT
3573390 AGTG * 5 18/20 AGTG AGAG AGTG AGAG AGTG
3579048 TCAA * 5 18/20 TCAA TAAA TCAA TAAA TCAA
3585228 TTGT * 5 18/20 TTGT ATGT TTGT TTGC TTGT
3598372 TGCC * 5 19/20 TGCC TGCC TGCT TGCC TGCC
3682847 CCTA * 5 18/20 CCTA CCTA CGTA CCTA CCTC
3693104 AGGC * 5 18/20 AGGC AGGC AGCC AGGT AGGC
3817741 AATG * 5 18/20 AATG AATG ATTG AATG ATTG
3826358 CTGT * 5 19/20 CTGT CTTT CTGT CTGT CTGT
3964598 AATA * 6 22/24 AATA AATA AATA AATA AATC AATC
4000811 AATA * 6 22/24 AATA AATA AATA AATA AATA AAAT
4026389 AATA * 5 19/20 AATA AATA AATA AATA AATT
4030423 ATTT * 5 19/20 ATTT ATTT ATTT TTTT ATTT
4030821 TAGG * 5 19/20 TAGG TTGG TAGG TAGG TAGG
4068250 TTAT * 5 18/20 TTAT TTAT TTAT TTAC TTGT
4100093 TACT * 5 18/20 TACT TACT TACT TACT TAGG
4180146 ATGT * 5 18/20 ATGT ATTT ATGT ATTT ATGT
4362307 TGAC * 5 19/20 TGAC AGAC TGAC TGAC TGAC
4380483 CCTG * 6 23/24 CCTG CCTG CCTG CCTG CCTG TCTG
4388568 ATAC * 5 18/20 ATAC ATAT ATAC ATAT ATAC
4452228 AAAT * 5 18/20 AAAT AAAA AAAT AAAT AAAA
4518235 CCTA * 5 18/20 CCTA CCTA CGTA CCTA CCAA
4523465 TGCC * 5 18/20 TGCC TGCC TACG TGCC TGCC
4533461 ATGT * 5 18/20 ATGT ATGT GTGT ATGT GTGT
4537006 CTGC * 5 18/20 CTGC CTAC CTAC CTGC CTGC
4543822 TTTC * 5 18/20 TTTC TTTC TTTT CTTC TTTC
4561400 GGCC * 5 18/20 GGCC TGCC GGCC TGCC GGCC
4686280 CCAA * 5 18/20 CCAA CAAA CCAA CGAA CCAA
4857910 CCTG * 5 20/20 CCTG CCTG CCTG CCTG CCTG
4911492 TCTT * 5 18/20 TCTT TCTT TCTT TCTA TTTT
4925230 AATA * 5 18/20 AATA AATA AATG AATA AATC
5050495 AAAT * 5 18/20 AAAT AAAA AAAT AAAA AAAT
5095500 TAAA * 6 23/24 TAAA TAAA TAAA TAAA TAAA AAAA
5155030 AAAG * 5 18/20 AAAG AAAG AAGG AAAG GAAG
5175934 TTCA * 5 18/20 TTCA TTTA TTCA TACA TTCA
5313730 AATA * 8 32/32 AATA AATA AATA AATA AATA AATA AATA AATA
5395492 ATTT * 5 18/20 ATTT ATTT ATTT ATAG ATTT
5440207 CAGG * 5 19/20 CAGG CAGG CAGG CAGG CAGA
5451086 CTTT * 5 18/20 CTTT CTTT CATT CTTT CTCT
5513503 TTAA * 5 18/20 TTAA TAAA TTAA TTAA TCAA
5553957 ATAC * 6 22/24 ATAC ATAC ATAC ATAC CTAC CTAC
5603134 TATT * 5 18/20 TATT TATT TATT TATT TTTC
5691608 GGTA * 5 18/20 GGTA GGTA GGCA CGTA GGTA
5724798 TTAT * 5 18/20 TTAT TAAA TTAT TTAT TTAT
5774217 AATA * 5 18/20 AATA AATT AATA AATT AATA
5812776 AAGT * 6 22/24 AAGT AAGT AAGT AAGT AAAT AAAT
5867259 GTGA * 6 22/24 GTGA GTGA GTGA GTGA GTGA GTCG
5973249 AATT * 5 18/20 AATT AATA AATT AATA AATT
6063518 GTCG * 5 18/20 GTCG GTCG GTCG GTCT GTTG
6208617 TTTA * 5 18/20 TTTA TTTA TTTA TTTT TTTT
6427470 ATTT * 5 20/20 ATTT ATTT ATTT ATTT ATTT
6472989 TGTA * 5 18/20 TGTA TGTA TGTA TGTG TGTG
6503225 CCTA * 5 18/20 CCTA CGTA CCTA CGTA CCTA
6626602 TTAT * 5 19/20 TTAT TTAT TTAT TTAT TTGT
6713641 TTTC * 5 18/20 TTTC TTTC TGTC TTTT TTTC
6918878 CAAA * 5 18/20 CAAA CAAA CGAA CAAA AAAA
6921492 TGCC * 5 18/20 TGCC TGCC TGCC TGTC TGTC
6930024 ACCT * 8 30/32 ACCT ACCT ACCT ACCT ATCT ACCT ACCT ACTT
7060390 AATA * 6 22/24 AATA AATA ATTT AATA AATA AATA
7122522 AAAT * 5 19/20 AAAT AAAT AAAT AAAT AATT
7129014 ATTT * 5 18/20 ATTT ATTT TTTT ATTT ATTC
7155044 TCAA * 5 18/20 TCAA AAAA TCAA TCAA TCAA
7218319 TTTA * 5 19/20 TTTA TTTA TTTA TTTA TTTT
7557576 ATTT * 5 18/20 ATTT ATTA ATTT ATTC ATTT
7622331 CTTC * 5 18/20 CTTC TCTC CTTC CTTC CTTC
7713920 AATT * 5 18/20 AATT ATTT AAAT AATT AATT
7949226 ATTT * 5 18/20 ATTT ATTT ATTT ATTT ACTA
8100115 TGAA * 5 18/20 TGAA TGAT TGAA TGAA TTAA
8102014 TAAA * 5 18/20 TAAA TAAA TAAA TAAT TTAA
8111019 TAAA * 5 18/20 TAAA TAAA AAAA TAAA AAAA
8190344 ATTT * 7 27/28 ATTT ATTT ATTT ATTT ATTT ATTT ATTA
8353204 AAAT * 5 18/20 AAAT AATT AAAT AAAC AAAT
8415779 TATC * 5 18/20 TATC AATC TATT TATC TATC
8502175 GCCT * 5 18/20 GCCT GCCT GCCT GCAC GCCT
8525192 TATG * 5 18/20 TATG AATG TATG TATT TATG
8546852 AAAG * 5 18/20 AAAG AAAG AAAG AAAC GAAG
8774060 TTAT * 5 18/20 TTAT TTAT TTAT TAAT TTAC
8782402 GCAT * 8 30/32 GCAT GCAT GCAT GCAT GCAT GCAT GCCT GCAG
8942063 AAGA * 5 18/20 AAGA AAGG AAGA AAGA GAGA
8967605 TTCT * 5 18/20 TTCT TCCT TTCT TTTT TTCT
9064110 AATA * 5 18/20 AATA AAAA AATA AAAA AATA
9256430 TTGA * 5 18/20 TTGA TTGA TTGA TTTC TTGA
9272875 CCAT * 5 18/20 CCAT CCAT CCAT CCAC CGAT
9364644 TAAA * 5 18/20 TAAA TAAA TCAA TTAA TAAA
9477704 TTTC * 5 18/20 TTTC TTTC TTTT TTTC TTTT
9733917 ACTT * 5 20/20 ACTT ACTT ACTT ACTT ACTT
9775790 ATAA * 5 18/20 ATAA ATAA ATAA AAAA TTAA
9800742 AATA * 5 20/20 AATA AATA AATA AATA AATA
9802830 AAAT * 5 18/20 AAAT AATT AAAT TAAT AAAT
9820359 TAAG * 6 22/24 TAAG TATC TAAG TAAG TAAG TAAG
10142925 GAAA * 6 22/24 GAAA GAAA GAAA GAAA ACAA GAAA
10233265 AATA * 5 19/20 AATA AATA AATA AATA AAAA
10292728 TTTA * 5 18/20 TTTA TTTA TTTA TTTT TATA
10425264 TTTG * 5 18/20 TTTG TTTG TTTG TTTA TTCG
10436384 ATAA * 6 22/24 ATAA ATAA ATAA ATAA ACAT ATAA
10439838 ATTT * 5 18/20 ATTT ATTT ATTT ATTT TTTG
10499532 ATTT * 5 18/20 ATTT ATAT TTTT ATTT ATTT
10577177 TTCT * 5 18/20 TTCT TTTT TTCT TTTT TTCT
10625378 CCAA * 5 20/20 CCAA CCAA CCAA CCAA CCAA
10715019 AGAA * 5 18/20 AGAA AGAA ATAA AGAA GGAA
10733041 AATT * 5 18/20 AATT AATT AATT AATT GATG
10785585 AATA * 5 18/20 AATA AATA AATA AATA AACC
10815203 TAAT * 5 18/20 TAAT TGAA TAAT TAAT TAAT
11015610 TGTT * 5 19/20 TGTT TGTT TGTT GGTT TGTT
11086570 AAGA * 5 18/20 AAGA AATA AAGA AATA AAGA
11115917 TATG * 5 18/20 TATG TATG TATG TATG TGTA
11171015 TGAT * 5 18/20 TGAT TGAT TGAT TGTT TGAA
11392168 GTTT * 5 18/20 GTTT GTTT GTGT GTTT GTTG
11497435 CTTT * 5 18/20 CTTT CTTT CTTT TTTT TTTT
11543920 TATT * 5 18/20 TATT TTTA TATT TATT TATT
11705255 AACA * 5 18/20 AACA AACA AACA AACA ATCG
11828061 AGAA * 5 18/20 AGAA AGGA AAAA AGAA AGAA
11863598 TGTA * 5 19/20 TGTA TGTA TGTA TGTA GGTA
11869069 TTTA * 5 18/20 TTTA TTTA TTTA TTTT TTTC
11896687 ACAT * 6 22/24 ACAT ACAT ACAT ACAT ACAT ACGC
12160538 TTTC * 5 18/20 TTTC TCTC TTTC TCTC TTTC
12166639 AAAT * 5 19/20 AAAT AAAT AAAT AAAT AACT
12248104 TTTC * 5 18/20 TTTC TTTC TCTC TTTC TATC
12321625 GTGA * 5 18/20 GTGA GTGA GCGT GTGA GTGA
12321876 AAAG * 5 18/20 AAAG AAAG AAAG AAAA AGAG
12435984 TATT * 5 18/20 TATT AATT TACT TATT TATT
12521935 TTTA * 5 18/20 TTTA TATA TTTA TTTA TCTA
12538453 CCTT * 5 18/20 CCTT CCTT CCTG CTTT CCTT
12562292 AAAT * 5 18/20 AAAT AAAA AAAT AAAA AAAT
12582013 TTAT * 7 27/28 TTAT TTAT TTAT TTAT TTAT TTAT TCAT
12703167 TAAA * 5 18/20 TAAA TAAA TAAA TTAA TTAA
12821862 TGTA * 5 18/20 TGTA TGTA TGTA TTTA TGTT
12850625 ATTT * 5 18/20 ATTT ATTT ATTT ATTG TTTT
13014285 GTTC * 5 18/20 GTTC GTTC GTTC GTTC ATTT
13067974 TTTA * 5 18/20 TTTA TTTA TTTT CTTA TTTA
13199647 ACAT * 5 18/20 ACAT ACAT ACTT ACCT ACAT
13230374 CTCC * 5 18/20 CTCC CTCT CTCT CTCC CTCC
13260794 TATT * 6 22/24 TATT AATT TATT TATT TATT TTTT
13304974 AATT * 5 18/20 AATT AATT AATT AATT TATA
13305313 TCTA * 5 18/20 TCTA ACTA ACTA TCTA TCTA
13414711 AGGC * 5 18/20 AGGC ATGC AGGC AGGC AGGG
13434600 TTAT * 5 18/20 TTAT TTAT TTAT TTAT TGTT
13664289 GTGA * 6 22/24 GTGA GTGC GTGT GTGA GTGA GTGA
13743464 TTTG * 5 18/20 TTTG TTTG TTTG TTTT TTTC
13899423 TATT * 5 18/20 TATT TTTT TATT TTTT TATT
13903386 TCGT * 8 31/32 TCGT TCGT TCGT TCGT TCGT TCGT TCGT TCGA
13905884 AATA * 5 18/20 AATA AAAA AATA AAAA AATA
13982346 CATC * 6 22/24 CATC CATC CATC CATC CATC CACA
13991897 AAGA * 5 18/20 AAGA AAGA GAGA GAGA AAGA
13997616 TAGG * 5 18/20 TAGG CACG TAGG TAGG TAGG
14110714 TTTA * 5 18/20 TTTA TTTA TTTA TTTT TTTT
14190392 GTTT * 5 18/20 GTTT ATTT GTTT GTTG GTTT
14223998 GCCT * 5 18/20 GCCT GCCT GCCT GCCT ACCG
14338957 TTAT * 5 18/20 TTAT TTAT TTAT TTTT TTTT
14475775 CTTT * 5 19/20 CTTT CTTT CTTT CTTT TTTT
14510775 TAGG * 5 18/20 TAGG TAGT TAGG TAGG TAGC
14798474 TTCA * 5 19/20 TTCA CTCA TTCA TTCA TTCA
15012264 TAAA * 5 18/20 TAAA TAAA TAAA CAAA AAAA
15026874 ATTA * 5 18/20 ATTA ATTA TTCA ATTA ATTA
15110602 CAAA * 5 19/20 CAAA TAAA CAAA CAAA CAAA
15185896 TTAA * 6 22/24 TTAA TTAA TTAA TTAA TTAA TAAC
15241552 AACA * 5 18/20 AACA AACA AACA AACA GAAA
15307457 AATA * 5 18/20 AATA AATA AGTT AATA AATA
15368007 AAAT * 5 18/20 AAAT AAAT AAAT AGAA AAAT
15409895 AATC * 5 19/20 AATC AATC AATC AATC AACC
15416758 ATAA * 6 22/24 ATAA ATAA ATGA ATAA ATAA ATAC
15425381 GCCT * 6 22/24 GCCT GCCT GCCT ACGT GCCT GCCT
15503750 CTGC * 5 18/20 CTGC CTGC CTGC ATGC CGGC
15557157 AGGC * 5 19/20 AGGC AGGC TGGC AGGC AGGC
15581091 GATT * 5 18/20 GATT GATT GATT TATT TATT
15611037 AGGT * 5 18/20 AGGT AGGT ACGT AGGT AGGA
15621579 TAAA * 6 22/24 TAAA TAAA TAAA TAAA TATA TTAA
15698630 CAAT * 5 18/20 CAAT AAAT CAAT CGAT CAAT
15699348 TAAA * 5 18/20 TAAA TAAA TAAA CAAA TAAT
15725076 ATTT * 5 18/20 ATTT ATTT ATTC ATTT ATTC
15788453 AGGC * 5 18/20 AGGC AGGC ACGT AGGC AGGC
16080322 CAGG * 5 18/20 CAGG CATG TAGG CAGG CAGG
16388372 CCTG * 5 18/20 CCTG CCTA CCTG CCTG CCTA
16419480 CTAC * 5 18/20 CTAC ATAC CTAC ATAC CTAC
16419500 ATAC * 5 18/20 ATAC CTAC ATAC CTAC ATAC
16419520 CTAC * 5 18/20 CTAC ATAC CTAC ATAC CTAC
16419540 ATAC * 5 18/20 ATAC CTAC ATAC CTAC ATAC
16419560 CTAC * 5 18/20 CTAC ATAC CTAC ATAC CTAC
16419582 ACCT * 5 18/20 ACCT ACAT ACCT ACAT ACCT
16419602 ACAT * 5 18/20 ACAT ACCT ACAT ACCT ACAT
16419638 ACCT * 5 18/20 ACCT ACAT ACCT ACAT ACCT
16419698 ACAT * 5 18/20 ACAT ACCT ACAT ACCT ACAT
16419720 CTAC * 5 18/20 CTAC ATAC CTAC ATAC CTAC
16419740 ATAC * 5 18/20 ATAC CTAC ATAC CTAC ATAC
16419760 CTAC * 5 18/20 CTAC ATAC CTAC ATAC CTAC
16419790 ACCT * 5 18/20 ACCT ACAT ACCT ACAT ACCT
16419810 ACAT * 5 18/20 ACAT ACCT ACAT ACCT ACAT
16419838 ACCT * 5 18/20 ACCT ACAT ACCT ACAT ACCT
16419858 ACAT * 5 18/20 ACAT ACCT ACAT ACCT ACAT
16419894 ACCT * 5 18/20 ACCT ACAT ACCT ACAT ACCT
16445275 TATT * 5 20/20 TATT TATT TATT TATT TATT
16471820 TTGA * 5 18/20 TTGA TTGA TTGA TTTC TTGA
16472282 TTGA * 5 18/20 TTGA TTGA TTGA TTTC TTGA
16517574 TAAT * 5 18/20 TAAT TAAT TCAT TAAT TAAA
16526561 ATTT * 5 19/20 ATTT ATTT ATTT ATTT ATTG
16542592 AGGC * 5 20/20 AGGC AGGC AGGC AGGC AGGC
17039270 TAAT * 5 18/20 TAAT TAAT TAAT TAAT AATT
17303351 TCCT * 5 18/20 TCCT GCCT TCCT TGCT TCCT
17427772 AGGC * 5 18/20 AGGC AGGC ACGT AGGC AGGC
17441011 TAAG * 5 19/20 TAAG TGAG TAAG TAAG TAAG
17472662 AGGC * 5 18/20 AGGC AGGC ACGT AGGC AGGC
17515771 TAAG * 5 19/20 TAAG TGAG TAAG TAAG TAAG
17619869 AAAT * 5 18/20 AAAT AAAT AAAT AAAT GAAG
17620425 TACC * 5 18/20 TACC TACC TACC TACC TGTC
17689010 ATGA * 6 22/24 ATGA ATGA ATGA ATGA ATGA AAAA
17978555 AATA * 5 18/20 AATA AAAA AATA AAAA AATA
18000238 TGCC * 6 22/24 TGCC TACC TGCC TGCC TGCT TGCC
18000454 CCTA * 5 18/20 CCTA CCTA CCTA CCTG CCTG
18000571 CCTA * 5 18/20 CCTA GCTA CTTA CCTA CCTA
18000676 CCTA * 8 30/32 CCTA CCTA TCTA CCTA CCTA CCTA CCTA CCAA
18000781 CTGC * 5 18/20 CTGC CTAC CTAC CTGC CTGC
18001046 TGCC * 5 19/20 TGCC TGCC TACC TGCC TGCC
18011351 TTTA * 5 18/20 TTTA TTTA TTTA TTTG TTTT
18148611 TTTA * 5 18/20 TTTA TGTA TTTA TTCA TTTA
18327338 TGCC * 5 18/20 TGCC TGCC TGCC TGCC TACG
18394822 ATTA * 5 18/20 ATTA ATTA AATA ATTA GTTA
18574478 AGGC * 5 18/20 AGGC AGGC AGGC AGGC ATGA
18836162 GGTA * 6 22/24 GGTA GATA GGTA GGTG GGTA GGTA
18836190 GGTA * 5 18/20 GGTA GGCA GGCA GGTA GGTA
18836211 AGGT * 11 41/44 AGGT AGGC AGGT AGGT AGGT AGGT AGGA AGTT AGGT AGGT AGGT
18836303 GTAG * 8 30/32 GTAG GTAG GTAG GTAG ATAG GTAG GTAG GTAA
18836348 TAGG * 7 26/28 TAGG TAGG TAGG TAGG TACG TAGT TAGG
18836417 GTAG * 10 36/40 GTAG GTAG GTAG GTAG ACAG GTAG GTAG GGAG GTAG GTAA
18836458 TAGG * 28 103/112 TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TACA GTAC CGGC
18837502 AGAC * 6 22/24 AGAC AGAC AGAC AGAC AGAC AAGC
18850850 ATTT * 6 23/24 ATTT ATTT ATTT ATTT ATTT ATTA
18987751 TTTA * 5 18/20 TTTA TTTA TGTA TTTA TTTT
19216288 AATA * 6 23/24 AATA AATA AATA AATA AATA AATT
19229641 TGTC * 5 20/20 TGTC TGTC TGTC TGTC TGTC
19230604 TACC * 39 143/156 TACC TACC TACC TACC TACC TACC TACC TACC TACC TACC TACC TACC TACC TACC TACC TACC TACC TACC TACC TACC TACC TACC TACC TACC TACC TATT TACC TACC TCCC TACC TACC TGTC TACC TACC TACC TACA TGTC TGTC TCTG
19230788 CCTA * 7 26/28 CCTA ACTA CGTA CCTA CCTA CCTA CCTA
19230830 TACC * 8 30/32 TACC TACC TACC TATC TACC TACC TACC TACG
19230907 CTAC * 11 41/44 CTAC CTAC CTAC CTAA CTTC CTAC CTAC CTAC CTAC CTGC CTAC
19230953 CTAC * 5 18/20 CTAC CTAC CTGC CTGC CTAC
19230975 ACCT * 6 22/24 ACCT ACCT ACCC ACCT ACCT ATCT
19258763 AATC * 5 18/20 AATC AATC AATC AATC GATA
19290621 TGTA * 5 18/20 TGTA TGCA TGTA TGTA TATA
19423663 GTAG * 6 22/24 GTAG GCAG GTAG GTCG GTAG GTAG
19423767 TAGG * 5 18/20 TAGG TAGG TAGG TAGG CAGT
19423790 GTAG * 8 29/32 GTAG GTAG GTAG GTAG GTAG GTAG GTAA AGAG
19423933 AGGT * 10 36/40 AGGT AGGT AGGT AGCT AGGT AGGT AGGT AGGT AGAG AGGA
19424092 TAGG * 10 39/40 TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG AAGG
19424226 AGGT * 12 44/48 AGGT AGGT AGGT AGGT AGGT AGGT AGGT AGGT AGAG AGGA AGGC AGGT
19424385 TAGG * 31 114/124 TAGG TAGG TATG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG AAGG CTAC CTAT
19424595 AGGT * 8 29/32 AGGT AGGT AGGT AGGT AGGT AGGT AGCA AGGC
19424730 TAGG * 10 38/40 TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGA AAGG
19424864 AGGT * 12 44/48 AGGT AGGT AGGT AGGT AGGT AGGT AGGT AGGT AGAG AGGA AGGC AGGT
19425023 TAGG * 16 58/64 TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TGGG TAGG TAGG TAGG TACT CACC
19508833 CACT * 5 18/20 CACT CACA AACT CACT CACT
19566290 AAAT * 5 18/20 AAAT AAAT AAAT AAAA AAAA
19578973 AAAT * 5 18/20 AAAT AACT AAAT AAAT ATAT
19586594 CCTA * 5 18/20 CCTA CCTA CCTG CCTA CTTA
19696357 TTTA * 5 18/20 TTTA TTTA TGTA TTTA TTTT
19743802 TACC * 16 58/64 TACC TACC TACC TACC CACC TACC TACC TACC TACC TACC TACC TACC TACC TACC TATA GCCT
19743985 CTAC * 9 34/36 CTAC CTAC CTAC CTAC CTAC CTAC CTAC CTAC CTGT
19744135 TACC * 8 29/32 TACC TACC TACC TACC TACC TACC TACG GAAC
19744264 CCTA * 6 22/24 CCTA CCTA CCGA CCTA CCTG CCTA
19810181 TACC * 16 58/64 TACC TACC TACC TACC CACC TACC TACC TACC TACC TACC TACC TACC TACC TACC TATA GCCT
19810364 CTAC * 9 34/36 CTAC CTAC CTAC CTAC CTAC CTAC CTAC CTAC CTGT
19810496 CCTA * 31 113/124 CCTA CCTA CCTA CCTA CCTA CCTA CCTA CCTA CCTA CCTA CCTA CCTA CCTA CCTA CCTA CCTA CCTA CCTA CCTA CCTA CCTA CCTA CCTA CCTA CCTA CATA CCTA CCTA TATC CTAC ATGT
19810733 CTAC * 9 34/36 CTAC CTAC CTAC CTAC CTAC CTAC CTAC CTAC CTGT
19810865 CCTA * 10 37/40 CCTA CCTA CCTA CCTA CCTA CCTA CCTA CCTA CCTA TAGA
19838161 ATAC * 5 18/20 ATAC CTAC ATAC CTAC ATAC
19839265 ATAC * 5 18/20 ATAC CTAC ATAC TTAC ATAC
19839376 ATAC * 5 18/20 ATAC CTAC ATAC CTAC ATAC
19841869 AGGT * 7 26/28 AGGT AGGT AGGT AGGT AGGT AGGT ATTT
19941044 TACC * 39 143/156 TACC TACC TACC TACC TACC TACC TACC TACC TACC TACC TACC TACC TACC TACC TACC TACC TACC TACC TACC TACC TACC TACC TACC TACC TACC TATT TACC TACC TCCC TACC TACC TGTC TACC TACC TACC TACA TGTC TGTC TCTG
19941228 CCTA * 7 26/28 CCTA ACTA CGTA CCTA CCTA CCTA CCTA
19941270 TACC * 8 30/32 TACC TACC TACC TATC TACC TACC TACC TACG
19941347 CTAC * 11 41/44 CTAC CTAC CTAC CTAA CTTC CTAC CTAC CTAC CTAC CTGC CTAC
19941393 CTAC * 5 18/20 CTAC CTAC CTGC CTGC CTAC
19941415 ACCT * 6 22/24 ACCT ACCT ACCC ACCT ACCT ATCT
19957367 ATTT * 6 23/24 ATTT ATTT ATTT ATTT ATTT ATTA
19964666 TGTC * 5 20/20 TGTC TGTC TGTC TGTC TGTC
19965630 TACC * 15 57/60 TACC TACC TACC TACC TACC TACC TACC TACC TACC TACC TACC TACC TACC TACC TNNN
20019346 AATA * 6 23/24 AATA AATA AATA AATA AATA AATT
20075497 AGGC * 5 18/20 AGGC AGGC AGGC AGGC ATGA
20159115 TAGG * 5 18/20 TAGG TATG TAGG TATG TAGG
20159280 TAGG * 5 18/20 TAGG TATG TAGG TATG TAGG
20159300 TATG * 5 18/20 TATG TAGG TATG TAGG TATG
20218354 ATAC * 5 18/20 ATAC CTAC ATAC CTAC ATAC
20219458 ATAC * 5 18/20 ATAC CTAC ATAC TTAC ATAC
20219569 ATAC * 5 18/20 ATAC CTAC ATAC CTAC ATAC
20222062 AGGT * 7 26/28 AGGT AGGT AGGT AGGT AGGT AGGT ATTT
20247028 TATG * 6 22/24 TATG TATA TATG TATG TATA TATG
20325708 ATTT * 5 18/20 ATTT TTTT ATTT TTTT ATTT
20334377 ATAC * 5 18/20 ATAC NTAC ATAC TTAC ATAC
20334425 ATAC * 5 18/20 ATAC CTAC ATAC ATAT ATAC
20334488 ATAC * 5 19/20 ATAC CTAC ATAC ATAC ATAC
20335079 GTAT * 5 18/20 GTAT GTAG GTAT GTAT TTAT
20335355 TAGG * 5 18/20 TAGG TATG TAGG TATG TAGG
20335469 GTAT * 5 18/20 GTAT GTAA GTAT GTAG GTAT
20351964 TAGG * 5 18/20 TAGG TATG TAGG TATG TAGG
20352129 TAGG * 5 18/20 TAGG TATG TAGG TATG TAGG
20352149 TATG * 5 18/20 TATG TAGG TATG TAGG TATG
20406192 TTTG * 5 19/20 TTTG TTTG TTTG TTTG TTCG
20432053 CTAC * 5 19/20 CTAC CTAC CTAC TTAC CTAC
20432077 CTAC * 53 192/212 CTAC CTAC CTAC CTAC TTAC CTAC CTAC CTAC CTAC CTAC CTAC CTAC CTAC CTAC CTAC CTAC CTAC CTAC CTAC CTAC CTTC CTAC CTAC CTAC CTAT CCAC CTAC ATAC CCAC CAAC CTAC CTAC CTAC CTAC CTAC CTAC CTAT CTAC CTAC CTAC GTAC CTAC CTAC CTAA ATAC CTAT CTAC CTAC CTAC CTAC CTAA CCTA TGTA
20627497 TATC * 5 18/20 TATC TATA TATC TATA TATC
20628878 TAAA * 5 18/20 TAAA TAAA TAAA TAAA TCAC
20644360 AATT * 5 18/20 AATT AATT AATT GATT AATG
20740434 AATT * 5 18/20 AATT AATT AATT GATT AATG
20752031 ATTA * 5 18/20 ATTA ATCA ATTA ATTA ATTT
20802592 ATTA * 5 18/20 ATTA ATCA ATTA ATTA ATTT
20825630 TATC * 5 18/20 TATC TATA TATC TATA TATC
21015175 TGCC * 5 18/20 TGCC TGCC TGCC TACG TGCC
21083500 ATAA * 6 22/24 ATAA ATAA ATAA ATAA ATAT ATAT
21189620 AAAT * 6 23/24 AAAT AAAT ACAT AAAT AAAT AAAT
21277633 AATA * 6 22/24 AATA AATA AATA AATA AATA AAAT
-----------------------------------------------------------------------------
Total sequence length......................... 21280512
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 377
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-15 AAAG-3 AAAC-1 AATA-18 AATT-8 AATG-1 AATC-2 AAGA-4
AAGT-1 AACA-3 AACT-1 ATAA-5 ATAC-14 ATTA-4 ATTT-16 ATGA-1
ATGT-2 ATGG-1 AGAA-2 AGAC-1 AGTG-1 AGGT-12 AGGC-13 ACAT-6
ACTT-1 ACCT-9 TAAA-10 TAAT-4 TAAG-6 TATT-10 TATG-5 TATC-3
TAGG-16 TACA-1 TACT-2 TACC-9 TTAA-3 TTAT-8 TTTA-13 TTTG-4
TTTC-5 TTGA-3 TTGT-1 TTCA-2 TTCT-2 TGAA-1 TGAT-1 TGAC-1
TGTA-4 TGTT-1 TGTC-2 TGCC-8 TCAA-2 TCTA-1 TCTT-2 TCGT-1
TCCT-1 GAAA-1 GATT-1 GTAT-2 GTAG-8 GTTT-2 GTTC-1 GTGA-3
GTCA-1 GTCG-1 GGTA-3 GGCC-1 GCAT-1 GCAG-3 GCCT-4 CAAA-3
CAAT-1 CATA-1 CATG-1 CATC-1 CAGA-1 CAGG-4 CACT-1 CTAC-16
CTTT-3 CTTC-1 CTGT-1 CTGC-7 CTCC-1 CCAA-2 CCAT-1 CCTA-17
CCTT-1 CCTG-5
----------------------------------------------------------------------------
Tetra-Nucleotide repeats in C. elegans Chromosome-V complete sequence
Minimum tetra-nucleotide repeating units = 5 (allowing a maximum of 10% mismatch)
Total 1 sequences searched with a total of 21280512 bp length
Total 377 repeats covering 8863 / 9692 base pairs
Length distribution of all tetra-nucleotide repeats
----------------------------------------------------------------------------------------------------------------------------------------------------
No. of repeat units 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 >=25
total repeats 273 54 11 13 4 5 3 2 0 0 1 3 0 0 0 0 0 0 0 0 8
----------------------------------------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tetra-nucleotide repeat classes
15-AAAT 18-AATA 5-ATAA 10-TAAA 16-ATTT 13-TTTA 8-TTAT 10-TATT = 95
3-AAAG 4-AAGA 2-AGAA 1-GAAA 3-CTTT 5-TTTC 2-TTCT 2-TCTT = 22
1-AAAC 3-AACA 0-ACAA 3-CAAA 2-GTTT 4-TTTG 1-TTGT 1-TGTT = 15
8-AATT 4-ATTA 3-TTAA 4-TAAT = 19
1-AATG 1-ATGA 1-TGAA 0-GAAT 0-CATT 0-ATTC 2-TTCA 0-TCAT = 5
2-AATC 0-ATCA 2-TCAA 1-CAAT 1-GATT 0-ATTG 3-TTGA 1-TGAT = 10
1-AAGT 0-AGTA 0-GTAA 6-TAAG 1-ACTT 0-CTTA 0-TTAC 2-TACT = 10
0-AAGG 0-AGGA 0-GGAA 0-GAAG 1-CCTT 1-CTTC 0-TTCC 1-TCCT = 3
0-AAGC 0-AGCA 0-GCAA 0-CAAG 0-GCTT 0-CTTG 0-TTGC 0-TGCT = 0
1-AACT 0-ACTA 0-CTAA 0-TAAC 0-AGTT 0-GTTA 0-TTAG 0-TAGT = 1
0-AACG 0-ACGA 0-CGAA 0-GAAC 0-CGTT 1-GTTC 0-TTCG 1-TCGT = 2
0-AACC 0-ACCA 2-CCAA 0-CAAC 0-GGTT 0-GTTG 0-TTGG 0-TGGT = 2
0-ATAG 0-TAGA 0-AGAT 0-GATA 0-CTAT 3-TATC 0-ATCT 1-TCTA = 4
14-ATAC 1-TACA 6-ACAT 1-CATA 2-GTAT 5-TATG 2-ATGT 4-TGTA = 35
1-ATGG 0-TGGA 0-GGAT 0-GATG 1-CCAT 1-CATC 0-ATCC 0-TCCA = 3
0-ATGC 0-TGCA 1-GCAT 1-CATG = 2
0-ATCG 0-TCGA 0-CGAT 0-GATC = 0
1-AGAC 0-GACA 0-ACAG 1-CAGA 0-GTCT 0-TCTG 1-CTGT 2-TGTC = 5
1-AGTG 3-GTGA 0-TGAG 0-GAGT 1-CACT 0-ACTC 0-CTCA 0-TCAC = 5
0-AGTC 1-GTCA 0-TCAG 0-CAGT 0-GACT 0-ACTG 0-CTGA 1-TGAC = 2
12-AGGT 3-GGTA 8-GTAG 16-TAGG 9-ACCT 17-CCTA 16-CTAC 9-TACC = 90
0-AGGG 0-GGGA 0-GGAG 0-GAGG 0-CCCT 0-CCTC 1-CTCC 0-TCCC = 1
13-AGGC 0-GGCA 3-GCAG 4-CAGG 4-GCCT 5-CCTG 7-CTGC 8-TGCC = 44
0-AGCT 0-GCTA 0-CTAG 0-TAGC = 0
0-AGCG 0-GCGA 0-CGAG 0-GAGC 0-CGCT 0-GCTC 0-CTCG 0-TCGC = 0
0-AGCC 0-GCCA 0-CCAG 0-CAGC 0-GGCT 0-GCTG 0-CTGG 0-TGGC = 0
0-ACGT 0-CGTA 0-GTAC 0-TACG = 0
0-ACGG 0-CGGA 0-GGAC 0-GACG 0-CCGT 0-CGTC 0-GTCC 0-TCCG = 0
0-ACGC 0-CGCA 0-GCAC 0-CACG 0-GCGT 0-CGTG 0-GTGC 0-TGCG = 0
0-ACCG 0-CCGA 0-CGAC 0-GACC 0-CGGT 0-GGTC 1-GTCG 0-TCGG = 1
0-ACCC 0-CCCA 0-CCAC 0-CACC 0-GGGT 0-GGTG 0-GTGG 0-TGGG = 0
0-GGGC 0-GGCG 0-GCGG 0-CGGG 0-GCCC 0-CCCG 0-CCGC 0-CGCC = 0
1-GGCC 0-GCCG 0-CCGG 0-CGGC = 1
----------------------------------------------------------------------------------------------------
----------------------------------------------------------------------------------------------------
Tetra-nucleotide repeats longer than 40 bp (repeated 10 or more times)
0-AAAT 0-AATA 0-ATAA 0-TAAA 0-ATTT 0-TTTA 0-TTAT 0-TATT = 0
0-AAAG 0-AAGA 0-AGAA 0-GAAA 0-CTTT 0-TTTC 0-TTCT 0-TCTT = 0
0-AAAC 0-AACA 0-ACAA 0-CAAA 0-GTTT 0-TTTG 0-TTGT 0-TGTT = 0
0-AATT 0-ATTA 0-TTAA 0-TAAT = 0
0-AATG 0-ATGA 0-TGAA 0-GAAT 0-CATT 0-ATTC 0-TTCA 0-TCAT = 0
0-AATC 0-ATCA 0-TCAA 0-CAAT 0-GATT 0-ATTG 0-TTGA 0-TGAT = 0
0-AAGT 0-AGTA 0-GTAA 0-TAAG 0-ACTT 0-CTTA 0-TTAC 0-TACT = 0
0-AAGG 0-AGGA 0-GGAA 0-GAAG 0-CCTT 0-CTTC 0-TTCC 0-TCCT = 0
0-AAGC 0-AGCA 0-GCAA 0-CAAG 0-GCTT 0-CTTG 0-TTGC 0-TGCT = 0
0-AACT 0-ACTA 0-CTAA 0-TAAC 0-AGTT 0-GTTA 0-TTAG 0-TAGT = 0
0-AACG 0-ACGA 0-CGAA 0-GAAC 0-CGTT 0-GTTC 0-TTCG 0-TCGT = 0
0-AACC 0-ACCA 0-CCAA 0-CAAC 0-GGTT 0-GTTG 0-TTGG 0-TGGT = 0
0-ATAG 0-TAGA 0-AGAT 0-GATA 0-CTAT 0-TATC 0-ATCT 0-TCTA = 0
0-ATAC 0-TACA 0-ACAT 0-CATA 0-GTAT 0-TATG 0-ATGT 0-TGTA = 0
0-ATGG 0-TGGA 0-GGAT 0-GATG 0-CCAT 0-CATC 0-ATCC 0-TCCA = 0
0-ATGC 0-TGCA 0-GCAT 0-CATG = 0
0-ATCG 0-TCGA 0-CGAT 0-GATC = 0
0-AGAC 0-GACA 0-ACAG 0-CAGA 0-GTCT 0-TCTG 0-CTGT 0-TGTC = 0
0-AGTG 0-GTGA 0-TGAG 0-GAGT 0-CACT 0-ACTC 0-CTCA 0-TCAC = 0
0-AGTC 0-GTCA 0-TCAG 0-CAGT 0-GACT 0-ACTG 0-CTGA 0-TGAC = 0
4-AGGT 0-GGTA 3-GTAG 5-TAGG 0-ACCT 2-CCTA 3-CTAC 5-TACC = 22
0-AGGG 0-GGGA 0-GGAG 0-GAGG 0-CCCT 0-CCTC 0-CTCC 0-TCCC = 0
0-AGGC 0-GGCA 0-GCAG 0-CAGG 0-GCCT 0-CCTG 0-CTGC 0-TGCC = 0
0-AGCT 0-GCTA 0-CTAG 0-TAGC = 0
0-AGCG 0-GCGA 0-CGAG 0-GAGC 0-CGCT 0-GCTC 0-CTCG 0-TCGC = 0
0-AGCC 0-GCCA 0-CCAG 0-CAGC 0-GGCT 0-GCTG 0-CTGG 0-TGGC = 0
0-ACGT 0-CGTA 0-GTAC 0-TACG = 0
0-ACGG 0-CGGA 0-GGAC 0-GACG 0-CCGT 0-CGTC 0-GTCC 0-TCCG = 0
0-ACGC 0-CGCA 0-GCAC 0-CACG 0-GCGT 0-CGTG 0-GTGC 0-TGCG = 0
0-ACCG 0-CCGA 0-CGAC 0-GACC 0-CGGT 0-GGTC 0-GTCG 0-TCGG = 0
0-ACCC 0-CCCA 0-CCAC 0-CACC 0-GGGT 0-GGTG 0-GTGG 0-TGGG = 0
0-GGGC 0-GGCG 0-GCGG 0-CGGG 0-GCCC 0-CCCG 0-CCGC 0-CGCC = 0
0-GGCC 0-GCCG 0-CCGG 0-CGGC = 0
----------------------------------------------------------------------------------------------------
Total repeats longer than 40 bp = 22
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© Division of Biochemical Sciences, National Chemical Laboratory, Pune 411008, INDIA