Di-Nucleotide Repeats in Genomic Sequences
Di-Nucleotide Repeats in
C. elegans Chromosome-V complete sequence
Genomic Sequence:..
lcl|chr_V
Position Repeat Coverage Repeat
35339 TC * 11 20/22 TC TC TC TC TC TC TC TC TC AC TT
42381 TC * 28 51/56 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TT TA CC TG TC TT
43095 AC * 17 31/34 AC AC AC AC AC AC AC AC AC AC AC TC AC TC AC AC AA
58133 GA * 11 20/22 GA GA GA AA GA GA GA GA AA GA GA
110407 GA * 10 18/20 GA AA GA GA GA GA GA GA GA AA
206137 CT * 29 53/58 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CC CG GG CG
346875 CA * 16 29/32 CA CA CA CA CA CA CA CA CA CA CA CA CA CA TT CT
789687 GT * 10 18/20 GT GT GT GT AT GT GT AT GT GT
939161 TC * 28 51/56 TC TC CC TA TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TA AA
1089339 TA * 13 24/26 TA TA TA TA TA TA TA TA TA TA TA TT TT
1100711 AG * 16 29/32 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AA GT
1131642 TG * 11 20/22 TG GG TG TG TG TG TG TG TG TG TT
1146978 AG * 16 29/32 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AA GT
1165247 AC * 10 18/20 AC AC AC AC AC AC AC AC TC AG
1177396 TG * 10 18/20 TG TG TG TA TG TG TG TG TA TG
1224202 TA * 10 18/20 TA TA TA TA TA TA TA TA TA GT
1233084 AC * 12 22/24 AC AC AC AA AC AC AC AC AC AC AC AA
1242682 CT * 10 18/20 CT CT CT CT CT CT CT GT GT CT
1254128 TA * 13 24/26 TA AA CA TA TA TA TA TA TA TA TA TA TA
1333004 AC * 10 18/20 AC AC AA AT AC AC AC AC AC AC
1371992 CA * 13 24/26 CA CA CA CA CA CA CA CA CA AA TA CA CA
1375686 TC * 10 18/20 TC TC TC TC TC TC TC TG TT TC
1458847 TA * 30 54/60 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG AT AT GA
1485500 GA * 10 19/20 GA GA GA GA GA GA GA GA GA GT
1539532 AT * 19 35/38 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT TT TT
1673070 AT * 15 27/30 AT AT AT AT AT AT AT AT AT AT AT AT AT AG GC
1831862 TA * 11 20/22 TA TA TA TT TA TA TA TT TA TA TA
1844576 TA * 10 18/20 TA TA TA CA TA TA TA GA TA TA
1853007 CA * 10 18/20 CA CA TA CT CA CA CA CA CA CA
1885008 AT * 11 20/22 AT AT AT AT AT AT AT AT AT GT AG
2521027 TC * 11 20/22 TC TC TC TC TC TC TC TC TC TC CT
2521064 CT * 63 115/126 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT TT TA TC CT AT CT AG AC AT
2532467 GA * 10 18/20 GA GA GA GA GA GA TA GA GA AA
2554495 AG * 12 22/24 AG AG AG AG AG AG AG AG AG TG AG GG
2555571 AT * 13 24/26 AT AT AC AC AT AT AT AT AT AT AT AT AT
2908256 AT * 10 18/20 AT TT AT AT AT AT AT AT AT TT
2939131 AT * 31 57/62 AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT GT AT AT TT CT
3113020 AC * 10 18/20 AC TC TC AC AC AC AC AC AC AC
3473601 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA CA TG
3480390 AC * 12 22/24 AC GC GC AC AC AC AC AC AC AC AC AC
3501584 AT * 15 28/30 AT AT AT AT AT AT AT AT AT AT AT AT AT AG AC
3516235 TA * 12 22/24 TA TA TA TA TA TA TA TA TA TG TA CA
3625102 CA * 13 24/26 CA CG CA CA CA CA CA CA CA CA CA CA AA
3625187 CA * 12 22/24 CA AG CA CA CA CA CA CA CA CA CA CA
3627074 AT * 11 20/22 AT AT CT AT AT AT CT AT AT AT AT
3764625 GT * 10 19/20 GT GT GT GT GT GT GT GT GT GG
3784901 GA * 11 20/22 GA GT GA GA GA GA GA GA GA GA AA
3921080 AG * 12 22/24 AG AG AG AG AG AG AG AG AG GG GG AG
3978382 AT * 11 20/22 AT TT AT AT AT AT AT AT AT AT AA
4022848 TC * 11 20/22 TC TC TC TC TC CC TC TC AC TC TC
4062185 AG * 12 23/24 AG AG AG AG AG AG AG AG AG AG AG AA
4066439 TA * 10 18/20 TA TA TA TA TA TA TA TA TG TT
4097394 TA * 10 19/20 TA TA TA TA TA TA TA TA TA TT
4099596 AT * 22 40/44 AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT TA
4126125 AT * 11 20/22 AT GT AT AT AT AT AT AT AT AT TT
4223581 AC * 45 82/90 AC AT AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AA AA AA TC CC GT
4226620 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AC CA
4272713 TA * 28 52/56 TA TT TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT AC
4339671 AT * 10 18/20 AT AT AT AT GT AT AT AA AT AT
4349141 AT * 35 63/70 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT CC CG CA
4367143 AC * 18 34/36 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC TT
4370710 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA CA GG
4373642 CT * 11 20/22 CT CA CA CT CT CT CT CT CT CT CT
4379748 TG * 10 18/20 TG TG TG TG TG TG TT TG CG TG
4386381 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG CT
4386518 TG * 12 23/24 TG TG TG TG TG TG TG TG TG TG TG CG
4388559 TA * 18 33/36 TA TA TA TA TA TA CA TA TA TA CA TA TA TA CA TA TA TA
4388596 AT * 26 47/52 AT AT AT AT AT AT AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT GC AA AG
4391173 AT * 13 24/26 AT AT AT AT AT AT AT AT AT AT AT TT CT
4464184 TC * 11 20/22 TC TC TT TC TC TT TC TC TC TC TC
4542651 AC * 20 37/40 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AT GT
4611062 CT * 17 31/34 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CA AA
4613072 GT * 12 22/24 GT GT AT GT GT GT GT GT GT GT GT GG
4623291 AG * 12 22/24 AG AG AG AG AG AG GG AG GG AG AG AG
4636121 AC * 12 23/24 AC AC AC AC AC AC AC AC AC AC AC AT
4678062 CA * 10 19/20 CA CA CA CA CA CA CA CA CA TA
4721657 AT * 72 130/144 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT GT AT AT AT AT AT GG AG TA CC TA CT GA
4776649 TG * 11 21/22 TG TG TA TG TG TG TG TG TG TG TG
4877288 AC * 11 21/22 AC CC AC AC AC AC AC AC AC AC AC
4877623 TG * 11 20/22 TG TG TG TG TG TG TT TG TA TG TG
5042832 CA * 18 33/36 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA AA AA CT
5048157 TC * 10 18/20 TC AT TC TC TC TC TC TC TC TC
5119809 AC * 10 18/20 AC AC AC AC AC TC TC AC AC AC
5121985 AC * 10 18/20 AC AC AC AC AC AC AC AC AT AG
5209796 GT * 10 18/20 GT GT GT AT AT GT GT GT GT GT
5240926 GT * 11 20/22 GT GG GT GT GT GT GT GT GT GT GA
5256217 AG * 21 39/42 AG AG AG AG AG AG GG AG AG AG AG AG AG GG AG AG AG AG AG AG AA
5269226 TC * 10 18/20 TC TC TC TC TC TC TC CC TC TA
5280543 GA * 10 18/20 GA GA GA GA GA TA GA AA GA GA
5439688 GA * 11 20/22 GA GA GA GA GA GA GA GA GA TG GA
5478333 CA * 15 28/30 CA CA CA CA CA CA CA CA CA CA CA CA CA CA TC
5487256 GA * 12 22/24 GA GA CG GA GA GA GA GA GA GA GA GA
5616484 TC * 10 19/20 TC TC TC TC TC TC TC TC TC TT
5673493 AT * 36 66/72 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA TT TG TT AG
5695556 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG AA
5758749 AC * 53 97/106 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AA CC TT TA AA CA
5815729 TA * 12 22/24 TA TA TA TA TA TA TA TA TA TA TG CA
5859989 AC * 10 18/20 AC AC AC AC AC AC AC AC AG AT
5999358 TG * 18 33/36 TG TG GG TG TG TG TG TG TT TG TG TG TG TG TG TG CG TG
6011771 AG * 10 18/20 AG AG AG GG AC AG AG AG AG AG
6012231 TG * 16 29/32 TG TG TA TG TG TG TG TG TG TG CG TG TG TG CG TG
6019517 TA * 10 18/20 TA TA CA TA CA TA TA TA TA TA
6093346 GA * 10 18/20 GA GA AA GA GA GA GA GA GA GC
6178337 TG * 18 33/36 TG TG GG TG TG TG TG TG TT TG TG TG TG TG TG TG CG TG
6190684 AG * 10 18/20 AG AG AG GG AC AG AG AG AG AG
6191140 TG * 16 29/32 TG TG TA TG TG TG TG TG TG TG CG TG TG TG CG TG
6198392 TA * 10 18/20 TA TA CA TA CA TA TA TA TA TA
6422513 CA * 11 20/22 CA CA TA CA CA CA CA CA CA CA AA
6531884 TG * 10 18/20 TG TG TG TG TG TG TG TG CG CG
6533312 GA * 11 20/22 GA GA GA AA GT GA GA GA GA GA GA
6598451 AG * 56 102/112 AG TA AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AC AA TA TT TT
6611787 GT * 10 19/20 GT GA GT GT GT GT GT GT GT GT
6753669 TG * 16 29/32 TG TG TG TG TG TG TG TG TG TG TG TT TG AG TG CG
6848065 AG * 10 18/20 AG AG AG AG AG AT AG AA AG AG
7110445 GA * 13 24/26 GA GA GA GA GG GA GA GA GA GA GA GT GA
7305158 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AT GA
7487137 TA * 18 33/36 TA TA TA CA TG TA TA TA TA TA TA TA TA TA TA TA TG TA
7487175 TA * 11 20/22 TA TA TA TA TA TA TA TA TA TA GT
7667200 AG * 21 38/42 AG CA AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG CG AG CG AG
7698030 TG * 10 18/20 TG TG TG TG CG TG AG TG TG TG
8099019 GA * 10 18/20 GA GA GA GA GA GA GA GA AT GA
8301705 TG * 11 20/22 TG TG TG TT TA TG TG TG TG TG TG
8334213 CA * 10 18/20 CA CA CA CA AA CA CA TA CA CA
8442328 AG * 12 22/24 AG AG AG AG AG AG AG AG AG AG AG TT
8509370 AG * 11 20/22 AG AG AT AA AG AG AG AG AG AG AG
8563321 TA * 16 29/32 TA TA TA TA TA TA TA TA TA TA AA TA TA TA TT TT
8674952 AT * 16 29/32 AT AT AT AT AT AT AT AT AT AT AT AT CC AT AT TT
8699437 TG * 10 18/20 TG TG TG CT TG TG TG TG TG TG
8766105 CA * 11 20/22 CA CA CA CA CA CA CA CA CA TT CA
8909231 AT * 10 18/20 AT TT AA AT AT AT AT AT AT AT
8949849 TC * 16 30/32 TC TC TT TC TC CC TC TC TC TC TC TC TC TC TC TC
9119464 TC * 51 92/102 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TG GG TA AA TA AT TA
9171059 CA * 11 21/22 CA CA CA CA CA CA CA CA AA CA CA
9232899 AG * 12 22/24 AG CG AG AG AA AG AG AG AG AG AG AG
9257302 GA * 11 20/22 GA AA GA GA AA GA GA GA GA GA GA
9453952 TC * 10 18/20 TC TC TC TC TC TC TC TC TT CC
9490080 GT * 10 18/20 GT GT GC GT GT GT GT GT GT GA
9559384 TC * 10 19/20 TC TC TC TC TC TC AC TC TC TC
9572653 TG * 12 22/24 TG TG TG TG TG TG TG TG TT TT TG TG
9604585 GA * 10 18/20 GA GA GA GA AA GA GA GA AA GA
9611584 TG * 10 18/20 TG TG TA AG TG TG TG TG TG TG
9627384 AG * 13 25/26 AG AG AG AG AG AG AG AG AG AG AG AG TG
9745596 AG * 11 21/22 AG AG AG AG AG AG AG AG AG AA AG
9782463 AG * 58 106/116 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG TG AG GG TG GG AG GA GA GA
9910054 AG * 10 18/20 AG AG GG AG AG AG AG AG AG AA
9942094 GT * 10 18/20 GT GT GT CT CT GT GT GT GT GT
9974066 AT * 12 22/24 AT AT AT AT AT AT AT AT AT AT AT CG
10043675 AT * 19 35/38 AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT AT AC AG
10054985 CA * 11 20/22 CA CA CA CA CA CA TA CA CA CT CA
10114196 TA * 13 24/26 TA TG TA TA TA TA TA TA TA TA TA TA AA
10137940 AT * 11 20/22 AT AT AT AT AT AT AT AT AT GT AG
10211047 GA * 12 22/24 GA AA GA GA GA GA GA GA TA GA GA GA
10303160 TA * 10 18/20 TA TA TA TA TT AA TA TA TA TA
10442319 TA * 11 20/22 TA TA CA TA TA TA TA TA TA TA AA
10493977 GT * 10 19/20 GT GT GT GT GT TT GT GT GT GT
10514514 TC * 10 19/20 TC TC TC TC TC TC TC TC TT TC
10597257 CA * 11 20/22 CA CA CA CA CA CA TA CA CA CA TA
10726960 TA * 11 21/22 TA TA TA TA TA TA TA TA TA TA CA
10738927 AG * 10 18/20 AG AA AG AG AG AG AG AG AG GG
10756979 AG * 10 18/20 AG AG AG AG AG AG AG AG AA AA
10805122 AC * 10 18/20 AC AC AC AC AC AC AC TC AC TC
10921189 TA * 10 18/20 TA TA TA TA TA TA TA TA TA AG
10976026 TC * 12 22/24 TC TC TC TA TT TC TC TC TC TC TC TC
11062773 AG * 11 20/22 AG AA AG AG AG AG AG AG AG AG AC
11070363 GT * 10 19/20 GT GT GT GT GT GT GT GT GT GC
11253644 AT * 41 75/82 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT CT CT TC AC TT AT AT GT
11273967 AT * 10 19/20 AT AT GT AT AT AT AT AT AT AT
11295997 AT * 26 47/52 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT GT GT GT TT
11324880 TC * 37 67/74 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC CC AT CC CT GC
11496918 TG * 45 81/90 TG TG TA TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TC AT TT AC TT TG TA
11505193 AT * 10 18/20 AT GT AT AT AT AT AT AT AT AC
11717541 AG * 11 20/22 AG AA AG AG AG AG AG AG AG AG AC
11877875 TC * 10 18/20 TC TC TC TC TC TC AC TC TC TT
11896638 CA * 37 67/74 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA TA CA TA CA TA CA TA CA TA CG CC
11916271 AT * 10 18/20 AT AT AT AT AT AT AT AT AA AG
12010451 TA * 10 19/20 TA TT TA TA TA TA TA TA TA TA
12036586 AT * 10 19/20 AT AT AT AT AT AT AT AT AT AA
12092034 TG * 10 18/20 TG TG TG TA TG TG TG TA TG TG
12194088 GA * 10 19/20 GA GA GA GA GA GA GA GA GA CA
12197111 GA * 11 20/22 GA GA AA GA GA GA GA GA GA GA TA
12212881 GT * 10 18/20 GT GT GT GA GT GA GT GT GT GT
12235486 AT * 11 20/22 AT AT AT AT AT AT GT AT AT AT GT
12321680 AG *120 216/240 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AC AA AA AG AA AG AA AG AA AA AG AG AA GA AG TA GA AA GA GG AT GA AA TT
12395707 AT * 20 36/40 AT CT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA TC
12399142 GT * 10 18/20 GT GT GT GT GT GT GT GC GT GG
12412746 TC * 10 18/20 TC TA TT TC TC TC TC TC TC TC
12601251 TC * 20 36/40 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC GT CA
12837679 AG * 10 18/20 AG AG AG AC AG AG AG GG AG AG
12904493 TC * 10 18/20 TC TC TC TC TC TC TC TC TT TT
13059952 TC * 10 18/20 TC TC TC TC TC TC CC TC TC GC
13108967 TG * 10 19/20 TG TG TG TG TG TG TG TG TG TT
13156424 TG * 18 33/36 TG TG TA TG TA TG TG TG TG TG TG TG TG TG TG TG TG TC
13226039 AG * 10 18/20 AG AG AG AG AG AG AG AA AG AA
13230347 TC * 29 53/58 TC TC TC TC TC TC TC TC CC TC TC TC TC TC TC CC TC TC TC TC TC CC TC CC TC TC TC CC TC
13249389 CA * 23 42/46 CA CA CA CT CA CA CA CT CA CA CA CA CA CA CA CA CA CA TA CA CA CA GA
13311853 TC * 10 18/20 TC TT TC TC TC TC TC TC TC TA
13346177 AT * 24 44/48 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT CA CG
13410715 TG * 11 20/22 TG AG TG TG TG TG TG TG TG AG TG
13412732 CA * 13 24/26 CA AA CA CA CA CA CA CA CA CA CA CC CA
13430861 GT * 12 23/24 GT GT GT GT GT GT GT GT GT GT GT TT
13505624 CT * 14 26/28 CT CT CT GT CT CT CT CT CT CT CT CT CT AT
13542345 GA * 10 18/20 GA AG GA GA GA GA GA GA GA GA
13543234 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AC TT
13548132 TC * 10 18/20 TC TG TC TC TG TC TC TC TC TC
13612245 CA * 10 18/20 CA CA CA AA CA AA CA CA CA CA
13724525 CA *129 232/258 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA AG AC TA CC TA CG CC TG CA TC GG GC AT TT GC AC CT
13857278 CA * 11 20/22 CA CA CA CA CA CA CA CA CA AA AA
13862634 TC * 11 20/22 TC TC TA TT TC TC TC TC TC TC TC
13988060 CT * 10 18/20 CT CT CT CT CT CT CT CT TT TT
13992279 TA * 11 20/22 TA TA TA TA TA TA CA TA TT TA TA
14005835 AT * 13 24/26 AT AT AT AT AT AT AT AT AT AT GT AT CT
14211871 CA * 10 18/20 CA CA CT CA CA CA GA CA CA CA
14213825 AC * 10 18/20 AC TG AC AC AC AC AC AC AC AC
14344824 AC * 11 20/22 AC AA AC AC AC AC AC AC AT AC AC
14350463 TG * 10 18/20 TG TG TA TG TG TG TG TG TT TG
14377921 AC * 10 18/20 AC AC AC TC AC AC AC AC AC AA
14401835 TA * 11 20/22 TA TA TA TA TA TA TA TA TT CA TA
14489543 AC * 10 18/20 AC AC AC AG AC AC AC AC AC AT
14516250 GA * 10 18/20 GA GA GA GC GA GA GA GA GT GA
14544619 AG * 12 22/24 AG AG GG AG AG AG AG AG AG AG AG GG
14546593 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA CA TT
14549177 TC * 13 24/26 TC TC TC TC TC TG TC TC TC TC TC TC TT
14592643 CA * 11 20/22 CA CA CA TA CA CA CA CA CA CA TA
14600563 AG * 10 19/20 AG AG AG AG AG AG AG AG GG AG
14768667 TA * 36 65/72 TA GT TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA AC TA TA TA TA TA TA TA TA TA TT TT TT
14802983 TA * 10 18/20 TA TA TA TA TA TA TA TT TA TC
14811092 CA * 16 29/32 CA TC CA CA CA CA CA CA CA CA CA CA CA CA CA TA
15252614 CA * 11 20/22 CA AA CA CA CA CA CA CA CA AA CA
15256751 TC * 10 18/20 TC AC TC TC TC TC TC TC TC TA
15258072 CA * 15 27/30 CA AA CA CA CA CA CA CA CA CA CA CA TA CA GA
15334037 AT * 17 31/34 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT CA
15381796 TA * 11 20/22 TA CA GA TA TA TA TA TA TA TA TA
15471355 TA * 13 24/26 TA TA TA TA GA TA GA TA TA TA TA TA TA
15645786 GT * 23 43/46 GT GT TT GT GA GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GC
15682159 AT * 10 18/20 AT AT AT AT AT AT AT AT AC AA
15963075 GA * 11 20/22 GA GT GA GA AA GA GA GA GA GA GA
15995892 AT * 15 27/30 AT AA AT AT AT AC AT AT AT AT AT AT AT AT AA
16054536 CT * 10 18/20 CT CT CT CT CT CT CT CT TT CA
16055706 CA * 10 18/20 CA CA CA CA CA CA CA CC CA CC
16085711 TC * 12 22/24 TC TC TC TC TC TC TC TC TC GG TC TC
16087174 CT * 10 18/20 CT CT CT CT CT CA CT CT CT CG
16087207 AT * 10 18/20 AT AT AT AT AT AT AT AC AT TT
16096729 TC * 10 18/20 TC CC TT TC TC TC TC TC TC TC
16097178 CT * 10 18/20 CT CT TT CT CT CT CT CT CT GT
16097219 AC * 10 18/20 AC AC AA AC AT AC AC AC AC AC
16196455 TA * 25 45/50 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA GA AG AA TT
16233513 TA * 28 52/56 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA TA TA TT CT
16488335 TC * 12 22/24 TC TC TC AC TC TC TC TC TC TC TC TA
16488492 TA * 11 20/22 TA TA TA TA TA TA TA TA TA TA GT
16495017 TC * 13 24/26 TC TC TC TT CC TC TC TC TC TC TC TC TC
16499766 GT * 10 19/20 GT GT GT GT GT GT GT GT GT AT
16501078 TG * 10 18/20 TG TG TG TG TG TT TG TG TG CG
16711205 CA * 11 20/22 CA CA CA CA CA CA CA CA CC CA CC
16843029 TA * 20 37/40 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TC GC TA
17196723 AT * 30 54/60 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TC AA AA GG
17240125 AC * 10 19/20 AC AC AC AC AC AC AC AC AC AG
17247031 GA * 10 18/20 GA GA GA GA GA GA GA GA GG TA
17276108 AT * 30 55/60 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GA AA GT AA
17508946 CA * 11 20/22 CA CA CA CA CA CA CA CA CG TA CA
17562534 TA * 23 42/46 TA AC TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TC TT
17628128 AG * 10 18/20 AG AG GG AG AG AG AG AC AG AG
17629192 CT * 11 20/22 CT CT CT CT CT CT CT CT CA CT TT
17695764 TG * 82 148/164 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TC TT AC GG AA AC CA CG GA AA
17879191 AT * 21 39/42 AT TT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT
17888131 CT * 16 29/32 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CA TA
17893210 TC * 74 134/148 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC CC TC TC TC TC TC TC TC TC TC CC TC TC TC TG TC TC GC AC CG CT GG TA AA
17953056 CA * 11 20/22 CA CA CT CA CA CA CA CA CA CA CG
18046280 GT * 10 19/20 GT GT GT GT GT GT GT GT GT GC
18052358 TA * 16 29/32 TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA GT
18130632 AT * 10 18/20 AT AT AT AA TT AT AT AT AT AT
18130671 TA * 33 61/66 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT AT AT
18215467 TA * 10 18/20 TA TA TA CA TA TA TA TA TA TT
18269057 TA * 15 28/30 TA TA TA TA TA TA TA TA TA TA TA TA TA TG TT
18269173 TA * 12 22/24 TA TA TA TA TA TA TA TA TA TA TA CT
18274948 TA * 17 31/34 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA AT TT
18285529 GA * 42 76/84 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GC TT AC TT CA
18303810 TA * 18 34/36 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA AA TG
18313557 AG * 11 20/22 AG AG AG AG AG AG AG AT CG AG AG
18448478 AT * 27 49/54 AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT AT AA AT AT AT TT GT AT AT
18495285 TA * 31 56/62 TA TA TG TA TA TT TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA CA TA TA CA TA TA TA GT
18591688 TA * 12 22/24 TA TA TA TA TA TA TA TA TA TA TA AC
18608938 TA * 11 20/22 TA TA TA AA TA TA TA TA TA TA TT
18654816 AG * 10 18/20 AG AG AG AG AG AG AA AG AG GG
18873199 AT * 12 22/24 AT AT AT AT AT AT AT AT AT AT CT TT
18893120 TG * 10 18/20 TG TG CG TG TG TG TA TG TG TG
18894205 TG * 12 22/24 TG TG TG TG TG TA TG TG TG TA TG TG
18894235 TG * 10 18/20 TG TG TG TT TG TG TG TG TG TA
18900046 CT * 11 20/22 CT CT CT CT CT CT CT CT CT TT AT
18975782 GT * 11 20/22 GT AT GT GT GT GT GT GT GT GT GC
19004039 CA * 11 20/22 CA CA CA CA CA CA CA CA CA TA CT
19016959 AT * 21 38/42 AT AT AT AT AC AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT TA
19054382 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AA AA
19061247 AT * 25 45/50 AT AT AT AT AT AT AT AT TT AT AT AT AT AT AT AT AT AT AC AT GC AT AT AT GT
19113427 AC * 10 18/20 AC AC AC AC AC AA AC AC AC AT
19113451 AC * 12 22/24 AC AC AT AC AC AC AT AC AC AC AC AC
19114540 AC * 10 18/20 AC AC AC AT AC AC AC AC GC AC
19240668 AT * 12 22/24 AT AT AT AT AT AT AT AT AT AT TT TT
19308251 AG * 10 18/20 AG AG AG AG AG AG AG AG AG CC
19314072 AC * 10 18/20 AC AC AC AC AC AA AC AC AC AT
19314096 AC * 12 22/24 AC AC AT AC AC AC AT AC AC AC AC AC
19315191 AC * 10 18/20 AC AC AC AT AC AC AC AC GC AC
19346531 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AT TC
19373697 TA * 11 20/22 TA TT TA TT TA TA TA TA TA TA TA
19373808 TA * 13 24/26 TA TA TA TA TA TA TA TA TA TA TA TT TT
19374209 AT * 11 20/22 AT AA AT AT AT AT AT AT AT AT TT
19382742 CA * 18 33/36 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CC TC
19385816 TG * 10 19/20 TG TG TG TG TG TG TG TG TG TC
19386118 GT * 11 21/22 GT GT GT GT GT GT GT GT GT GT GC
19430359 CA * 10 18/20 CA CA CA CA CA CA CA GA GA CA
19475260 GT * 11 20/22 GT AT GT GT GT GT GT GT GT GT GC
19555497 AT * 12 23/24 AT AT AT AT AT AT AC AT AT AT AT AT
19575458 AC * 10 18/20 AC AC AC AC AC AC AC AC AC CA
19629049 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AA AA
19635914 AT * 23 42/46 AT AT AT AT AT AT AT AT TT AT AT AT AT AT AT AT AT AC AT GC AT AT AT
19686049 AT * 20 37/40 AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT TA
19687024 TA * 10 18/20 TA TA TA TG TA GA TA TA TA TA
19691506 TA * 13 25/26 TA TG TA TA TA TA TA TA TA TA TA TA TA
19692234 AT * 13 25/26 AT AT AT AG AT AT AT AT AT AT AT AT AT
19692284 TA * 11 20/22 TA TA TA TA TA TA TA TA TA TA AT
19693490 TA * 32 58/64 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA CT GT AT
19755315 CA * 19 35/38 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA TC CC
19757515 AC * 10 19/20 AC AC AC AC AC AC AC AC AC AA
19807569 CA * 10 18/20 CA CA CA CA CA CA CA GA GA CA
19836530 AT * 21 38/42 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AG TT AT TA
19839247 AT * 10 18/20 AT AT AT AT AT AT AA CT AT AT
19865069 AT * 13 24/26 AT AT AT AT AT AT AT AT AT AT AT AA AG
19865180 AT * 11 20/22 AT AT AT AT AT AT AT AA AT AA AT
20030968 TA * 12 22/24 TA TA TA TA TA TA TA TA TA TA TA AC
20129242 AG * 10 18/20 AG AG AG AG AG AG AA AG AG GG
20161624 TA * 10 18/20 TA TA TA TA TA TA TA TA GT TA
20216723 AT * 21 38/42 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AG TT AT TA
20219440 AT * 10 18/20 AT AT AT AT AT AT AA CT AT AT
20243595 AT * 10 18/20 AT AT AT AT AT AT AT AT AC CT
20280049 AT * 10 18/20 AT CT AT AT AT AT AC AT AT AT
20293964 AT * 11 20/22 AT AT AT AT AT AT AT AC AT AT AC
20294578 TA * 10 18/20 TA AC TA TA TA TA TA TA TA TA
20298829 AT * 11 20/22 AT AT AT AT AT AT AT GT AT GT AT
20334526 AT * 10 18/20 AT AT AT AG AT AT AT AT AT AC
20335486 TA * 10 18/20 TA TA TA GT TA TA TA TA TA TA
20354473 TA * 10 18/20 TA TA TA TA TA TA TA TA GT TA
20533214 AT * 12 22/24 AT AT AT AT AT AT AT AT AT AA AT TT
20541001 GA * 11 20/22 GA GA GA GA GA GT GA GA GA GA AA
20547540 GA * 10 18/20 GA GA GA GA GA GA CG GA GA GA
20551909 TC * 11 20/22 TC TC TC TC TC TC TC TC AC TC GC
20606522 TA * 30 55/60 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA CA TA TA TA TA TG TG GC
20606713 TA * 12 23/24 TA TA TA TA TA TA TA TA TA TA TT TA
20606846 AT * 10 19/20 AT AT AT AT AT AT AT AT AT AA
20627437 TA * 43 78/86 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TC TA TA TA TC TA TA TA TC TA AC AT
20825570 TA * 43 78/86 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TC TA TA TA TC TA TA TA TC TA AC AT
20954316 TA * 57 103/114 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA CA TA TA TA TA TG TG GC GT TA GG AC
20954553 TA * 12 23/24 TA TA TA TA TA TA TA TA TA TA TT TA
20954685 AT * 10 19/20 AT AT AT AT AT AT AT AT AT AA
20955956 AT * 20 36/40 AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT GT AG
21065286 TG * 10 18/20 TG TG TG TG TG TG TG TG TG GA
21083508 AT * 10 18/20 AT AA AT AA AT AT AT AT AT AT
21120246 AC * 10 19/20 AC AC AC AC AC AC AC AC AC AT
21159661 AG * 13 24/26 AG AC AG AG AG AG AG AG AG AG AG AG GG
21236772 CA * 30 54/60 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CG CA CA CA TT CG AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 21280512
Minimum Di-Nucleotide repeat units............ 10
Mismatch allowed ............................. 10%
Total number of repeats detected.............. 358
-----------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 40 40 27 23 30 27 24 18 26 9 0 0
15 to 19 7 7 2 0 2 7 6 0 1 2 0 0
20 to 24 10 2 2 0 1 1 0 1 1 0 0 0
25 to 29 4 3 0 0 0 0 0 0 3 1 0 0
30 to 34 3 5 0 0 0 1 0 0 0 0 0 0
35 to 39 2 1 0 0 0 1 0 0 1 0 0 0
40 to 44 1 2 0 1 0 0 0 0 0 0 0 0
45 to 49 0 0 0 0 1 0 1 0 0 0 0 0
50 and more 1 1 3 0 1 1 1 0 2 1 0 0
-----------------------------------------------------------------------------------------
Total 68 61 34 24 35 38 32 19 34 13 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
68 AT + 61 TA = 129
34 AG + 24 GA + 13 CT + 34 TC = 105
19 GT + 32 TG + 38 CA + 35 AC = 124
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Di-Nucleotide repeats in C. elegans Chromosome-V complete sequence
Minimum di-nucleotide repeating units = 10 (allowing a maximum of 10% mismatch)
Total 358 repeats covering 10282 / 11272 base pairs
Length distribution of all di-nucleotide repeats
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
no. of repeat-units 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 >=50
total repeats 132 74 37 20 1 6 12 4 9 3 6 6 1 4 1 2 2 1 4 2 5 2 1 1 0 1 2 2 0 0 0 1 1 2 0 2 0 0 0 0 11
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Length distribution of different di-nucleotide repeat classes
no. of repeat-units 10-14 15-19 20-24 25-29 30-34 35-39 40-44 45-49 >=50
total repeats--> 264 34 18 11 9 5 4 2 11
AT 40 7 10 4 3 2 1 0 1
TA 40 7 2 3 5 1 2 0 1
AG 27 2 2 0 0 0 0 0 3
GA 23 0 0 0 0 0 1 0 0
AC 30 2 1 0 0 0 0 1 1
CA 27 7 1 0 1 1 0 0 1
TG 24 6 0 0 0 0 0 1 1
GT 18 0 1 0 0 0 0 0 0
TC 26 1 1 3 0 1 0 0 2
CT 9 2 0 1 0 0 0 0 1
GC 0 0 0 0 0 0 0 0 0
CG 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------
Sequence-wise distribution of di-nucleotide repeats
Sequence AT TA AG GA AC CA TG GT TC CT GC CG
--------------------------------------------------------------------------------------------------------
lcl|chr_V -( 21280512 bp) 68 61 34 24 35 38 32 19 34 13 0 0
--------------------------------------------------------------------------------------------------------
Total ( 21280512 bp) 68 61 34 24 35 38 32 19 34 13 0 0
--------------------------------------------------------------------------------------------------------
-------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
68 AT + 61 TA = 129
34 AG + 24 GA + 13 CT + 34 TC = 105
19 GT + 32 TG + 38 CA + 35 AC = 124
0 GC + 0 CG = 0
-------------------------------------------------------------------------------
-------------------------------------------------------------------------------
Frequency distribution of di-nucleotides repeated for 20 times or more
--repeats longer than 40 bp
21 AT + 14 TA = 35
5 AG + 1 GA + 2 CT + 7 TC = 15
1 GT + 2 TG + 4 CA + 3 AC = 10
0 GC + 0 CG = 0
-------------------------------------------------------------------------------
Total repeats >= 40 bp = 60
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© Division of Biochemical Sciences, National Chemical Laboratory, Pune 411008, INDIA