Mono-Nucleotide Repeats in Genomic Sequences
Mono-Nucleotide Repeats in
C. elegans Chromosome-V complete sequence
Genomic Sequence:
lcl|chr_V
Position Repeat-length Repeat
52114 19/21 AAAAACAAAAAAAAACAAAAA
135474 19/21 AAAAATTAAAAAAAAAAAAAA
145920 19/21 TTTTTTATTGTTTTTTTTTTT
154268 20/22 TTTTTTTTTTAATTTTTTTTTT
161024 21/23 CCCCCCCCCCCCCCCCCACCCCA
165118 18/20 AAAAAAACAAAAAAAAAAAC
205290 18/20 TTTTTTTTTCTATTTTTTTT
224862 18/20 AAAAAAAAACAAAAAAAGAA
239524 19/21 AAAAAAAAAAAAAGAAAACAA
248768 18/20 TTTTTTTTTTTTAATTTTTT
328112 18/20 AAAAAAAAAAAGAAAAAAAT
355007 19/21 AAAAAATAAAAATAAAAAAAA
371356 23/25 GGGGGGGGGGGGGGGGGGGGGAGGC
377678 20/22 TTTTTTGTTTTTTTTTGTTTTT
380588 20/22 AAAAAAAAAAACGAAAAAAAAA
546415 18/20 TTTTTTTTCTGTTTTTTTTT
617938 18/20 TTTTTTTTTTCTTTTTTTTC
629376 18/20 TTTTTTTTGATTTTTTTTTT
636206 19/21 TTTTTTTTTAATTTTTTTTTT
694213 21/23 CCCCCCCCCCCCCCCCCCCCGCT
711910 18/20 AAAAAAAATTAAAAAAAAAA
810774 19/21 AAAAACAAAAAAAAAACAAAA
961358 19/21 TTTTTTTTTTGTTTATTTTTT
972411 18/20 AAAAAAAACAAAAACAAAAA
1033026 20/22 TTTTTTTTTGTTTTTTTTTTCT
1072047 20/22 GGGGGGGGGGGGGGGTGGGGGC
1075603 19/21 AAAAAAAAATGAAAAAAAAAA
1103667 20/22 CCCCCCCCCCCCCCCCTCCCCA
1140859 19/21 TTTTTTTTTTTCGTTTTTTTT
1141483 19/21 TTTTTTTTTTTTTTTTTTTGG
1147102 18/20 CCCCCCCCCCCCCCCCCACA
1148044 18/20 GGGGGGGGGGGGGGCGGCGG
1163428 19/21 GGGGGGGGGGGGGGAGGGGGT
1170495 18/20 AAAAAAATAAAAACAAAAAA
1179736 18/20 AAAAAAGAAACAAAAAAAAA
1318340 22/24 GGGGGGGGGGGGGGGGGGGGGAAG
1348031 22/24 AAAAAAAAAAAAAAAAAAAACTAA
1374712 18/20 GGGGGGGGGGGGGGGGGTAG
1418511 19/21 AAAAAAAAAAAAAATTAAAAA
1448352 19/21 TTTTTTATGTTTTTTTTTTTT
1450388 19/21 CCCCCCCCCCCCCCCCCCCAG
1535776 19/21 GGGGGGGGGGGGGGGGGGGAA
1596714 18/20 TTTTTGTTGTTTTTTTTTTT
1602098 19/21 AAAAAAAACCAAAAAAAAAAA
1650173 20/22 AAAAAAAAACAAAAAAAAAACA
1770435 18/20 TTTTTTTCTTTTTTTTTTTG
1787472 25/27 AAAAAAAAAAAAAAAAAAAAGAAAAAC
1854780 22/24 GGGGGGGGGGGGGGGGGGCGGGGT
1882826 18/20 AAAAAAACCAAAAAAAAAAA
1905573 22/24 AAAAAAAAACAAAAAAACAAAAAA
1909013 18/20 AAAAAAAAACAAAAAAAAAT
1918660 18/20 AAAAAAAAAGAAAGAAAAAA
1927079 20/22 GGGGGGGGGGGGGGGGGGGGTA
1981856 19/21 AAAAAAAAAAATAAAAAAATA
2000574 18/20 AAAAAAAACCAAAAAAAAAA
2018119 18/20 AAAAAAAAAAGAAAAAAATA
2050018 18/20 TTTTTTTTTTTTTTCATTTT
2066567 19/21 TTTTTTTTTGTTTTTTTGTTT
2223218 22/24 TTTTTTTTTTTTTAATTTTTTTTT
2237605 18/20 TTTTTTATTTTTTATTTTTT
2238193 18/20 AAAAAATAAAAAATAAAAAA
2300397 18/20 TTTTTTTTGTGTTTTTTTTT
2310965 18/20 AAAAAAAAACAAAAAAAAAT
2408676 18/20 TTTTTTTTGTGTTTTTTTTT
2419244 18/20 AAAAAAAAACAAAAAAAAAT
2477052 19/21 TTTTTTTTTGGTTTTTTTTTT
2511435 18/20 GGGGGGGGGGGGGGGGGAGC
2521724 18/20 AAAAAAAAAACAACAAAAAA
2521769 19/21 AAAAAACAAAAAACAAAAAAA
2572276 18/20 CCCCCCCCCCCCCCCCCATC
2577959 23/25 AAAAAAAAAAAAAAAAGAACAAAAA
2578211 18/20 TTTTTACTTTTTTTTTTTTT
2585457 18/20 TTTTTTTTTTTTTCATTTTT
2585479 23/25 TTTTTTTTTTTTTTTTTTTTTTTCG
2594274 18/20 AAAAAAAAAAAAAAACGAAA
2600922 19/21 TTTTTTTTTTTCGTTTTTTTT
2628738 18/20 AAAAAAAAGAAAAAAAAAAT
2629150 18/20 TTTTTTTTTTGTTTTTTTTA
2637384 19/21 AAAAAAAACAAAGAAAAAAAA
2638279 18/20 AAAAAAATTAAAAAAAAAAA
2649772 19/21 AAAAAAAAATTAAAAAAAAAA
2651354 18/20 TTTTTTTTTTGGTTTTTTTT
2722568 25/27 AAAAAAAAAGAAAGAAAAAAAAAAAAA
2778488 20/22 AAAAAACAAAAAAAAAGAAAAA
2788404 18/20 AAAAAACAAAAAACAAAAAA
2788717 19/21 AAAAAACAAAAAACAAAAAAA
2797975 18/20 AAAAATAAAAAAAAACAAAA
2825422 19/21 TTTTTTTTTGTGTTTTTTTTT
2857095 21/23 AAAAAAAAAAAAAAAAAAGTAAA
2870069 25/27 GGGGGGGGGGGGGGGGGGGGGGGGCAG
2932446 21/23 CCCCCCCCCCCCCCCCCCCCTAC
2944431 19/21 AAAAAAAACAAAAAAAGAAAA
2949836 18/20 AAAAAAAAAAGAGAAAAAAA
2950877 23/25 CCCCCCCCCCCCCCCCCCCCCCCAA
2956076 21/23 AAAAAAAAAAAACAAAAAAAAAC
2979420 19/21 AAAAAACAAAAAAACAAAAAA
2979765 23/25 AAAAAAAACCAAAAAAAAAAAAAAA
2982339 24/26 CCCCCCCCCCCCCCCCCCCCCACCCA
2983723 20/22 AAAAATTAAAAAAAAAAAAAAA
2988366 18/20 AAAAAAATGAAAAAAAAAAA
2993718 19/21 TTTTTTTTTTGTTTTTATTTT
3023017 19/21 TTTTTTTTGTTTTTTTTTTTG
3037214 22/24 TTTTTTTTTTTTTTTGTATTTTTT
3066017 24/26 TTTTTTTTTTTTTTTGATTTTTTTTT
3073621 21/23 TTTTTTTTTCTTTTTTTTTGTTT
3080185 30/33 GGGGGGGGGAGGGGGGGGGGGGGGGGGGGGTGT
3096705 20/22 CCCCCCCCCCCCCCCCCCCTGC
3105417 21/23 AAAAAAAAAAACCAAAAAAAAAA
3105499 18/20 AAAAAAAAACCAAAAAAAAA
3105773 21/23 AAAAAAAAAAACAAAAAAAAAAT
3105842 26/28 AAAAAACCAAAAAAAAAAAAAAAAAAAA
3109631 21/23 AAAAAAAATTAAAAAAAAAAAAA
3111886 19/21 AAAAAAAAAAAACTAAAAAAA
3112462 20/22 TTTTTTTTTTTGCTTTTTTTTT
3114612 20/22 AAAAAAAAAAAAGAAAAAAAAT
3155099 19/21 TTTTTATTTTATTTTTTTTTT
3201645 34/37 AAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAG
3322940 21/23 TTTTTATTTATTTTTTTTTTTTT
3339104 19/21 AAAAAGAAAAACAAAAAAAAA
3397240 19/21 TTTTTTTTTTTTTTTTAATTT
3425692 18/20 TTTTTTTCTTTTTTTTTGTT
3430322 22/24 AAAAAAAAAAAAAACAATAAAAAA
3505450 19/21 AAAAAAAAAGCAAAAAAAAAA
3563946 18/20 TTTTTGTTTTTTTTTTTTTC
3575114 18/20 AAAAAAATAAAATAAAAAAA
3614398 18/20 AAAAAAAAAAAAAACTAAAA
3713681 22/24 GGGGGGGGGGGGGGGGGGGGGGTT
3727352 18/20 AAAAAAAAACAAAAAAAAAG
3747128 18/20 AAAAACAAAAAAAAACAAAA
3747473 19/21 AAAAAAAGAAAAAAAAAGAAA
3770469 18/20 GGGGGGGGGGGGGGGGGGAT
3777274 18/20 TTTTTATTTTTTATTTTTTT
3800965 18/20 TTTTTTTTTTTAGTTTTTTT
3804359 22/24 TTTTTGTTTTTTTTTTGTTTTTTT
4028202 21/23 AAAAAAAAACAAAAAACAAAAAA
4061607 18/20 TTTTTTTCTTTTTTTTTTTG
4067151 20/22 AAAAAAAACCAAAAAAAAAAAA
4069109 19/21 AAAAAAAAAAGGAAAAAAAAA
4069157 21/23 TTTTTTTTTGTTTTTTTTTTTTG
4076470 20/22 AAAAAACCAAAAAAAAAAAAAA
4076619 18/20 AAAAAAAAAACAAAAAAAAT
4111913 20/22 AAAAAATAAAAAAAAAACAAAA
4129502 21/23 AAAAAAAAACCAAAAAAAAAAAA
4162766 23/25 TTTTTTTGTTTTTTGTTTTTTTTTT
4189335 19/21 AAAAAAAAAAATGAAAAAAAA
4266868 18/20 TTTTTTTGTTTTTTTTTTTA
4267692 18/20 TTTTTTTTTTTTCATTTTTT
4343636 18/20 TTTTTGGTTTTTTTTTTTTT
4354339 18/20 CCCCCCCCCCCCCCTTCCCC
4358015 18/20 CCCCCCCCCCCCCCCCACCA
4361472 26/28 CCCCCCCCCCCCCCCCCCCCCCCCACCG
4363487 21/23 AAAAAAGAAAAAAGAAAAAAAAA
4366032 28/31 CCCCCCCCCCCCCCCCCCCCTCCCCCCCCAA
4380245 18/20 GGGGGGGGGGGGGGGGGGAA
4438545 19/21 AAAAAAACAAAAAAAATAAAA
4451216 22/24 CCCCCCCCCCCCCCCCCCCGTCCC
4466716 20/22 AAAAAAAAACAAGAAAAAAAAA
4469397 18/20 TTTTTTTTGATTTTTTTTTT
4502196 18/20 TTTTTTTTGTTTTTTTTTTC
4516333 18/20 AAAAAATAAAAAAAAACAAA
4560358 19/21 AAAAAAAAAAACAAAAGAAAA
4589346 20/22 TTTTTTTTTGTTTTTTTTTTGT
4623837 21/23 TTTTTTTTTTGTTTTTTTTTTCT
4624081 20/22 TTTTTTTTTTGGTTTTTTTTTT
4636957 18/20 AAAAAAAAAATAAAAAAAGA
4658123 18/20 GGGGGGGGGGGGGGGGGGCA
4732925 20/22 AAAAAAAAAAAAAAATTAAAAA
4773813 19/21 TTTTTTTTTTTTTTTTTCTAT
4803139 19/21 TTTTTTTTTTTTTTTTTTTAA
4877010 20/22 TTTTTTTTTTTTTTTTTATTTC
4935903 18/20 AAAAAACAAATAAAAAAAAA
4943259 18/20 TTTTTTTTTGTTTTTTTTTA
5044695 20/22 CCCCCCCCCCCCCCCCCCCCGT
5083464 26/28 CCCCCCCCCCCCCCCCCCCCCCCGCCTC
5086277 18/20 TTTTTTTTTTTTTGATTTTT
5134535 21/23 CCCCCCCCCCCCCCCCCACCCCA
5141574 18/20 TTTTTTTTTTTTTAATTTTT
5177585 20/22 AAAAAAAAAAGAAAAAAAAGAA
5205047 18/20 TTTTTTTTTTTCCTTTTTTT
5276190 21/23 TTTTTTTTTTTTAGTTTTTTTTT
5346764 19/21 TTTTTTTGTTGTTTTTTTTTT
5425561 20/22 AAAAAAAAAACAAAACAAAAAA
5431583 19/21 TTTTTTTTTTTTTTAATTTTT
5432136 18/20 AAAAAAAAAGAAAAACAAAA
5443238 25/27 AAAAAAAAAAAAAAAAAAAAAAAAACG
5509218 18/20 AAAAACTAAAAAAAAAAAAA
5536109 20/22 TTTTTTATTTTTTTTTATTTTT
5671079 22/24 CCCCCCCCCCCCCCCCCCCCCACA
5674225 18/20 AAAAAAAAAAGAAAAAGAAA
5684572 18/20 AAAAAAAATAAGAAAAAAAA
5790743 18/20 AAAAAAGAACAAAAAAAAAA
5849138 19/21 CCCCCCCCCCCCCGCTCCCCC
5865201 18/20 AAAAAAAAAACAAAAAAAAC
5951461 20/22 AAAAAAAATTAAAAAAAAAAAA
5989953 21/23 AAAAAAAAAGAAAAAAAAAACAA
6001359 19/21 TTTTTTTTTTCATTTTTTTTT
6057939 18/20 TTTTTTTTTGGTTTTTTTTT
6180328 19/21 TTTTTTTTTTCATTTTTTTTT
6288647 26/28 CCCCCCCCCCCCCCCCCCCCCCTCCTCC
6364758 18/20 TTTTTTTTTGCTTTTTTTTT
6395336 18/20 TTTTTTTTTGCTTTTTTTTT
6414406 20/22 AAAAAATAAAAAAATAAAAAAA
6479327 18/20 TTTTTTTTTTTTTTTTTTCA
6555180 18/20 AAAAAAACAACAAAAAAAAA
6591820 27/30 TTTTTTTTTTTTTTTTTTTTTTTTTTCCTA
6624156 19/21 AAAAAAAAAGAAAAAAAAATA
6653134 18/20 CCCCCCCCCCCCCCCCCCAG
6724603 19/21 TTTTTTTTTTTTTTTTTTTGA
6874542 18/20 TTTTTTTTTTTGTTTTTTCT
6903848 18/20 AAAAAAAAAACAAAACAAAA
6993016 18/20 GGGGGGGGGGGGGGGGGTGA
7085293 18/20 AAAAAAAAAAAAAATAATAA
7131681 19/21 TTTTTTATTTGTTTTTTTTTT
7303305 21/23 GGGGGGGGGGGGGGGAGGGGGTG
7336068 19/21 TTTTTTTTGTTGTTTTTTTTT
7355732 19/21 AAAAAAAAATAATAAAAAAAA
7395441 18/20 AAAAAAAAGAAAAGAAAAAA
7444839 26/28 TTTTTTTTTTTTTTTTTTTTTTTTAATT
7482058 18/20 AAAAAAATAAAAACAAAAAA
7488641 19/21 AAAAAAAAAAAGAAAAAAGAA
7608839 19/21 AAAAAAAAACGAAAAAAAAAA
7752826 21/23 AAAAAAAAAAAAAAAAAACTAAA
7794995 19/21 AAAAAAAAAAAGAAAAGAAAA
7978454 18/20 TTTTTGTTTTTTTTTTATTT
8038086 18/20 AAAAAAAAAATAATAAAAAA
8053396 18/20 AAAAAAAAAATAAAAAAAAG
8205053 18/20 GGGGGGGGGGGGGGGGGAAG
8281842 18/20 AAAAAACGAAAAAAAAAAAA
8293831 18/20 AAAAAAATAAAAAAAAAACA
8337856 18/20 TTTTTTTTTTTTTTTTCTTA
8457270 18/20 AAAAAACAAAAAGAAAAAAA
8507641 20/22 TTTTTTCTTTTTCTTTTTTTTT
8542647 18/20 TTTTTTTTTGGTTTTTTTTT
8630301 25/27 AAAAAATAAAAATAAAAAAAAAAAAAA
8874614 19/21 TTTTTTTTTTTTTTCATTTTT
8875331 18/20 AAAAATGAAAAAAAAAAAAA
8939097 18/20 AAAAAAAAAAAAAACAAAAT
9067974 18/20 AAAAATGAAAAAAAAAAAAA
9196562 20/22 TTTTTTTTTTTTTTTTTTTCAT
9209747 18/20 TTTTTTGTTTTTTATTTTTT
9273647 20/22 TTTTTTTTTTTTTATTATTTTT
9315642 19/21 AAAAAAAATAAAAAATAAAAA
9349668 18/20 AAAAAAACAACAAAAAAAAA
9481215 19/21 CCCCCCCCCCCCCCCCCCCAT
9997653 22/24 AAAAACAAAAAAACAAAAAAAAAA
10125690 21/23 CCCCCCCCCCCCCCCCCCCCCAA
10146813 18/20 AAAAAATAAAATAAAAAAAA
10200617 19/21 TTTTTTTCTTTATTTTTTTTT
10214026 18/20 AAAAAAAGAAAAAAAGAAAA
10421730 19/21 TTTTTTTTTGTTATTTTTTTT
10513753 22/24 AAAAAAAAACAAAAAAACAAAAAA
10578711 18/20 TTTTTTTTTCTTTTTTTTTC
10680313 21/23 TTTTTTCTTTTTTTTTCTTTTTT
10982090 18/20 AAAAAAAAAAACAAAAAAGA
11039294 20/22 AAAAAAAAAAAAATAAAATAAA
11239233 30/33 TTTTTTTTTTTTTTTTTTTGGTTTTTTTTTTCT
11408556 18/20 AAAAAAAAAGAAAAAAACAA
11418181 32/35 TTTTTTTTTTTGTTTTTTTTTTTTTTTTTAATTTT
11595983 18/20 AAAAAAAAACAAAAAACAAA
11674471 22/24 CCCCCCCCCCCCCCCCCCCCCCAA
11718429 19/21 CCCCCCCCCCCCCCCCCCCAT
11789330 21/23 AAAAAAAAAAACAAAAAAAAAGA
11923938 18/20 AAAAAAAATTAAAAAAAAAA
12156934 18/20 TTTTTTTCTTGTTTTTTTTT
12238766 18/20 TTTTTATTTTTTTATTTTTT
12370914 18/20 TTTTTTCTTGTTTTTTTTTT
12433156 19/21 AAAAAAAAAAAAAAAAAAATC
12517395 19/21 AAAAAAAAAAAATAAAAAATA
12562290 19/21 AAAAATAAAAAAATAAAAAAA
12699968 20/22 TTTTTTTTGTTTTCTTTTTTTT
12731847 18/20 AAAAAAAAAAAAAAAAAATT
12841535 19/21 AAAAAAAAAAGAAAAAAGAAA
12988795 22/24 AAAAAAAAAAAAAAAAAAAAAACT
13053957 19/21 AAAAAAAACAAAAAAAAAACA
13060030 18/20 TTTTTTTTTGTTTTTTTTTC
13260812 23/25 TTTTTTTTTTTTTTATTTTTTTTTA
13275308 18/20 TTTTTTTTGTTTTTTTTTTA
13375453 23/25 TTTTTTTTTTTTTTTTTTTTTTTAA
13481524 19/21 TTTTTTGTTTTTTTTTGTTTT
13647949 18/20 AAAAAATAAAAAAAGAAAAA
13853974 19/21 AAAAAAAAAAGAGAAAAAAAA
13855876 18/20 TTTTTTTTTGTTTTTTTTTA
13862458 19/21 AAAAAAAAAAAAAGAAAACAA
13899425 21/23 TTTTTTTATTTTTTTATTTTTTT
13905887 21/23 AAAAAAATAAAAAAATAAAAAAA
13923072 20/22 GGGGGGGGGGGGGGGGGGGGAT
13926537 18/20 AAAAACAAAAAAACAAAAAA
13954462 18/20 AAAAAAAAAGAAAAAAGAAA
13985213 21/23 AAAAAAAAATAAATAAAAAAAAA
13999504 18/20 TTTTTTTTTTCTTTTTTTCT
14056986 20/22 AAAAAAACAAAAAAAAACAAAA
14105010 18/20 TTTTTTTTGTTTTTTTTGTT
14105913 21/23 TTTTTTTTTCGTTTTTTTTTTTT
14142367 19/21 TTTTTTTTTAATTTTTTTTTT
14163235 18/20 AAAAAAAAGAAAAACAAAAA
14165071 18/20 TTTTTGTTTTTCTTTTTTTT
14203916 18/20 GGGGGGGGGGGGGGGTGGGA
14232192 18/20 TTTTTTTTTTGTTTTGTTTT
14246676 19/21 TTTTTTTATTTCTTTTTTTTT
14276955 19/21 TTTTTTTTTTGTTTTTTATTT
14277402 18/20 AAAAAACAAAAAAACAAAAA
14308855 18/20 AAAAAAGAAAAAAAATAAAA
14312232 19/21 GGGGGGGGGGGGGGGGGCGTG
14325650 18/20 AAAAAAAAAACAAAAAAAAC
14539322 28/31 TTTTTTTTTTTTTTTTTTTTTTTGTTTTTAA
14587127 19/21 AAAAAACAAAATAAAAAAAAA
14591377 19/21 AAAAAAAAAACAAAAAAAAAT
14664821 18/20 TTTTTTTTTTAGTTTTTTTT
14690978 23/25 GGGGGGGGGGGGGGGGGGGGGTGGT
14693648 20/22 TTTTTTTTTTTTAATTTTTTTT
14709829 18/20 GGGGGGGGGGGGGGGGTGGA
14774000 20/22 AAAAAAAAAAAAGAAAAAAAAG
14775537 19/21 TTTTTTTTTCTTTTTTTTTTG
14907976 21/23 AAAAAAAAGAAAAAAAAAAAAAG
14943905 18/20 AAAAAATTAAAAAAAAAAAA
14958623 21/23 TTTTTTATATTTTTTTTTTTTTT
15268306 23/25 AAAAAAAAAAAAAGTAAAAAAAAAA
15351872 25/27 GGGGGGGGGGGGGGGGGGGGGGGCAGG
15361279 18/20 TTTTTTTATTTTTTTTATTT
15384049 22/24 AAAAAAAAAAAAAAAAAAAAATTA
15385992 18/20 TTTTTTCGTTTTTTTTTTTT
15386363 19/21 TTTTTGTTTTTTTTTTTTTTG
15387036 18/20 TTTTTTTGTTATTTTTTTTT
15536425 30/33 AAAAAAAAAAAAAAAAAAGAAAAAAAATAGAAA
15721403 20/22 CCCCCCCCCCCCCCCCCCCTTC
15861678 18/20 TTTTTTTGTTTTTTTTTTTG
15868222 19/21 CCCCCCCCCCCCCCCCCCCTT
16017479 20/22 AAAAAAACAAAAAAAGAAAAAA
16021066 20/22 AAAAAACAAAAAACAAAAAAAA
16128962 20/22 AAAAAAAAAAAAAAAACAAAAT
16160936 20/22 AAAAAAAAAGAAAAAAAAAAAC
16267508 20/22 TTTTTTTTCTCTTTTTTTTTTT
16302270 18/20 AAAAAAAAAGAAAAAAAATA
16413548 26/28 GGGGGGGGAGGGGGGGGGGGGGGGGGGC
16446204 19/21 AAAAAAAACGAAAAAAAAAAA
16478025 31/34 AAAAAAAAAAAAAAAAAAAAAAAAAGGAAAAAAG
16504162 18/20 CCCCCCCCCCCCCCTCCCCT
16506272 19/21 TTTTTTATTTCTTTTTTTTTT
16508919 19/21 AAAAAAAAACAAAAAAAAAAT
16520104 19/21 TTTTTTATTTCTTTTTTTTTT
16521711 24/26 AAAAATCAAAAAAAAAAAAAAAAAAA
16533792 18/20 AAAAAAAACAAAAAAAAATA
16589803 22/24 AAAAAAAAAACAAAAAAAAAACAA
16626740 19/21 TTTTTTTTGTTTTTTTTTTTG
16736503 22/24 AAAAAAAAAAGAAAAAAAGAAAAA
16770922 18/20 AAAAAAAAATGAAAAAAAAA
16884991 18/20 TTTTTTTCGTTTTTTTTTTT
16914188 18/20 TTTTTTTCGTTTTTTTTTTT
17025061 28/31 TTTTTTTTTTTTTTTTTTTTTTTTTTTGATG
17034525 22/24 TTTTTTTTTTGTTTTTTGTTTTTT
17038766 22/24 CCCCCCCCCCCCCCCCCCCCCGTC
17039028 18/20 AAAAAAAAACAAAAAAAAAG
17044810 19/21 TTTTTATTTTTTTTATTTTTT
17150612 19/21 CCCCCCCCCCCCCCCCCTCTC
17151944 18/20 AAAAAACAAAAAAAAACAAA
17175107 18/20 TTTTTTTTGTTTTTGTTTTT
17225262 18/20 AAAAAAAAAAGAAAAAAATA
17250696 18/20 AAAAAAAAAAAAAAAAAATT
17332817 18/20 TTTTTTTTTTTGTTTTTTTG
17365800 19/21 AAAAAAAAAAAAATAAATAAA
17372187 20/22 GGGGGGGGGGGGGGGGGGGCAG
17380782 19/21 TTTTTTGTTTTTTTTTTGTTT
17422978 21/23 TTTTTTTTTTTTTTTTTTTTGCT
17431294 18/20 GGGGGGGGGGGGGGGGGGTA
17477483 20/22 TTTTTTTGTTTTTTTGTTTTTT
17477752 19/21 TTTTTTTTTGGTTTTTTTTTT
17477792 21/23 TTTTTTTTTTTTTGGTTTTTTTT
17477834 18/20 TTTTTTGTTTTTTGTTTTTT
17492288 18/20 GGGGGGGGGGGGGGGGGGTA
17496804 22/24 AAAAAAAAAATTAAAAAAAAAAAA
17506187 21/23 AAAAAAAAAAAAAAAAAAAAATT
17507436 20/22 AAAAAAAAAAAAAAAAAAAAGG
17510525 23/25 AAAAAACAAAAAAAAACAAAAAAAA
17552720 18/20 AAAAAAAAAACAAAAAAAAC
17603987 18/20 AAAAAATTAAAAAAAAAAAA
17616364 18/20 AAAAAATAAAAAATAAAAAA
17627507 27/30 AAAAAAAAAAAAAACAAAAAAAAAAGAAAT
17691165 21/23 AAAAATAAAAAAAAACAAAAAAA
17696358 19/21 AAAAAAGAAAAAGAAAAAAAA
17718450 18/20 AAAAAAAAACAAAAAAAAAT
17718667 18/20 AAAAAAAAAAAACCAAAAAA
17732747 19/21 CCCCCCCCCCCCCCCCCACTC
17753902 18/20 TTTTTTTTTTGTTTTTTATT
17775191 18/20 TTTTTTTTTTTTTTTTAATT
17795432 22/24 AAAAATAAAAAAATAAAAAAAAAA
17814202 18/20 AAAAAAAAAAAAAAATAAAT
17840979 20/22 TTTTTTTTTTGGTTTTTTTTTT
17885787 18/20 TTTTTTTTTTTTTTGCTTTT
17888311 19/21 AAAAAAAAAATTAAAAAAAAA
17894939 20/22 TTTTTTTTTTTGGTTTTTTTTT
17909939 19/21 AAAAACAAAAAAAAAAAAAAC
17921611 32/35 AAAAAAAAAAAAAAAAAAAATTAAAAAAAAAAAAT
17922698 21/23 AAAAAAAAAAAAAAAAAAAATAT
17931577 18/20 AAAAAACAAAAAACAAAAAA
17931616 22/24 AAAAAAACCAAAAAAAAAAAAAAA
17956054 19/21 AAAAAAAAAAAAAAAAAAATT
17957773 21/23 TTTTTTTTTTTTTTTTTTTTTCA
17965243 18/20 TTTTTTGATTTTTTTTTTTT
17977624 22/24 GGGGGGGGGGGGGGTGGGGGGGAG
17979526 19/21 TTTTTTATTTTTTTTATTTTT
17985266 19/21 CCCCCCCCCCCCCCCCCCCTT
17987115 19/21 AAAAAAAAATAGAAAAAAAAA
18029767 24/26 AAAAAAAAACAAAAAAAAAACAAAAA
18046311 18/20 GGGGGGGGGGGGGGGGAGAG
18059235 18/20 TTTTTTTGTTTTTTTTTTTG
18059484 18/20 TTTTTTGTTTTTTGTTTTTT
18085465 20/22 TTTTTTTTTTTTTAATTTTTTT
18088477 19/21 AAAAAAAAAACAAAAAAAAAT
18111004 18/20 AAAAAAAAAAAAATAGAAAA
18112224 31/34 AAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAC
18132033 19/21 CCCCCCCCCCCCCCCCCCTCA
18136794 18/20 CCCCCCCCCCCCCACACCCC
18137528 18/20 TTTTTTTTTCATTTTTTTTT
18151630 20/22 AAAAATGAAAAAAAAAAAAAAA
18172235 21/23 TTTTTTTTTTTTTTTTTTTTTCA
18174814 19/21 TTTTTTTTTTTTTTTTTAATT
18184833 21/23 TTTTTTTTTTTGTTTTTTTTTCT
18198793 19/21 TTTTTTTTTTAATTTTTTTTT
18201879 21/23 TTTTTTTTTTCGTTTTTTTTTTT
18218490 18/20 AAAAAAAAAAAAAAAAAATT
18232947 18/20 TTTTTTGGTTTTTTTTTTTT
18264942 20/22 TTTTTTTTTTTAGTTTTTTTTT
18294790 18/20 AAAAAAAAAAAAAAAAATAT
18372320 23/25 GGGGGGGGGGGGGGGGGGGGGGGTT
18373467 20/22 AAAAAAAAGAATAAAAAAAAAA
18392054 18/20 TTTTTTGTTTTTTTTTTGTT
18406719 20/22 AAAAATCAAAAAAAAAAAAAAA
18411644 19/21 TTTTTTTTCTATTTTTTTTTT
18442281 19/21 AAAAAAAATTAAAAAAAAAAA
18473049 19/21 TTTTTTGTTTCTTTTTTTTTT
18473678 18/20 TTTTTGTTTTTTTTTTTTTA
18525756 19/21 TTTTTTTTTTGATTTTTTTTT
18546127 18/20 AAAAAAAATAAAAAATAAAA
18546769 20/22 TTTTTTTTTGTTTTTTTTTCTT
18583575 21/23 TTTTTGTTTTGTTTTTTTTTTTT
18591315 18/20 AAAAAAAATTAAAAAAAAAA
18595386 24/26 AAAAAAAAAAAAAAAAAAAAAAAGAC
18595829 18/20 TTTTTTTCTTCTTTTTTTTT
18596611 18/20 AAAAAAAATAAAAATAAAAA
18605360 19/21 CCCCCCTCCCCCCCCCCTCCC
18609067 23/25 AAAAAAAAACAAAAAAACAAAAAAA
18611622 18/20 AAAAAAAAAGAGAAAAAAAA
18619917 23/25 TTTTTTTTTTTTTTTTTTTTTTAAT
18620127 18/20 TTTTTTCTTTTTTTTTTCTT
18632857 18/20 TTTTTTTTTTTTTTTTGTTG
18688403 23/25 CCCCCCCGCTCCCCCCCCCCCCCCC
18688430 26/28 CCCCCCCCCCCACCCCTCCCCCCCCCCC
18688459 1138/1265 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCCCCCCCCCCCTCCCGCCCCCCTCCCCCCCCCCCCCGCCCCCCCCGCCCCCCCCCCTTCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGACCCCCCCCCCCCACCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCTCCCCCCCCCACACCCCCCCCCCCCCACCCTCTCCCCCCCCCCCCCCCCACCCCCCCACACCCCTCCCCCCACCCCCCCACCCCACACCCGCCCCCCCCCTCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCACCCCCCCACCTCTCTCCCCCCATCCCCGCCCCCCCCCCCTCCCCCCCCCCACCCCCCCCCCCCCAACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCTCCCCACCCCCCCCCCCCCCGCCCGTCCCCCTCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCACCCCCCCCCCCGCTGCCCTCCCCCGGCGCGCCCCACCTACTAAGTAGGATGCGCACCGTCGAGCAAGGATCTTTTGGTTAGTGGATTATTTTTTAAACAAAACAAACTATTA
18703073 18/20 TTTTTTTCTTTTTTATTTTT
18703515 20/22 AAAAACAAAAATAAAAAAAAAA
18712415 19/21 AAAAAAAAAACAAGAAAAAAA
18818937 23/25 TTTTTTTTTTAATTTTTTTTTTTTT
18872026 18/20 TTTTTGTTTTTTTTTATTTT
18887788 18/20 GGGGGGGGGGGGGGGCGGAG
18931296 19/21 AAAAAAAGAAAAAAAAGAAAA
18973875 20/22 AAAAAAAAAAAAAACAAAAATA
19027449 20/22 AAAAAGAAAAAAAAAAAAAAAT
19048841 20/22 TTTTTTTTTCTTGTTTTTTTTT
19073934 28/31 TTTTTTTTTTAGTTTTTTTTTTTTTTTTTTC
19162710 19/21 TTTTTTTCTTTTTTTTTATTT
19183863 19/21 AAAAAATTAAAAAAAAAAAAA
19204908 19/21 TTTTTTTCTTTTTTTTTATTT
19256884 18/20 AAAAAAATCAAAAAAAAAAA
19320534 20/22 CCCCCCCCCCCCCCCGCCCACC
19350171 18/20 AAAAAAAAACGAAAAAAAAA
19369121 22/24 TTTTTTAGTTTTTTTTTTTTTTTT
19383881 21/23 CCCCCCCCCCCCCCCCCCCCTAC
19386006 25/27 TTTTTTTTTTTTTTTTTTTTTTTTTGA
19391936 22/24 CCCCCCCCCCCCCCCCCCCCCATC
19409829 19/21 AAAAAAAAAAAACGAAAAAAA
19420536 19/21 AAAAAAAAGAAAAAGAAAAAA
19425466 18/20 TTTTTTTTTAATTTTTTTTT
19427218 24/26 CCCCCCCCCCCCCCCCCCCCCCGACC
19428581 18/20 AAAAAAAAAAAAGAACAAAA
19430273 21/23 GGGGGGGGGGGGGGGGGGGGAAG
19473354 20/22 AAAAAAAAAAAAAACAAAAATA
19503110 23/25 TTTTTTTTTATTTTTTTTATTTTTT
19525307 19/21 TTTTTTTTTTTTTTTTAATTT
19527510 18/20 TTTTTTTTTTTTTTTTTTGG
19535817 18/20 TTTTTTGTTTTTTTTTGTTT
19536905 22/24 TTTTTTTTTTTTTTTTTTTTTTCA
19552930 24/26 GGGGGGGGGGGGGGGGGGGGGAGTGG
19561702 18/20 AAAAAAAAATCAAAAAAAAA
19561867 23/25 AAAAAAAAAAAACAAATAAAAAAAA
19562632 22/24 AAAAAAAGAAAAAAAAAAAAAAAT
19566279 20/22 AAAAAAAAAAAAAATAAATAAA
19566302 21/23 AAAAAAAAAAAAAAAAAAAAAGC
19569269 18/20 TTTTTATTTTTTATTTTTTT
19623508 20/22 TTTTTTTTTCTTGTTTTTTTTT
19648599 28/31 TTTTTTTTTTAGTTTTTTTTTTTTTTTTTTC
19689080 18/20 AAAAAAAAAAATAAAAAATA
19704781 18/20 TTTTTTATTTTTTATTTTTT
19706508 18/20 TTTTTTTTTTTTGCTTTTTT
19720316 19/21 TTTTTTTTATTTTTTTTTATT
19743397 18/20 AAAAAAAAATTAAAAAAAAA
19756455 21/23 CCCCCCCCCCCCCCCCCCCCCTA
19764800 19/21 TTTTTTGTTTTTCTTTTTTTT
19789916 19/21 AAAAAATTAAAAAAAAAAAAA
19809776 18/20 AAAAAAAAATTAAAAAAAAA
19814428 19/21 AAAAAAAAAACAAAAAAAAGA
19814575 18/20 TTTTTTTTTCTTTTTTTTTC
19815526 18/20 TTTTTTTTTTCGTTTTTTTT
19815747 18/20 TTTTTTTTGTTTTTTTTTTC
19815952 18/20 AAAAAAAGAAGAAAAAAAAA
19816005 18/20 AAAAAAAAATGAAAAAAAAA
19817134 19/21 AAAAAAAAATGAAAAAAAAAA
19826835 20/22 TTTTTTTTTTTTTTTATTTTTC
19881826 18/20 AAAAAAAAAAAAAACAAAAT
19926272 19/21 TTTTTTTTTGGTTTTTTTTTT
19945375 20/22 CCCCCCCCCCCCCCCCCCCATC
19963277 18/20 AAAAAAAAAAAAAAAAAATT
19971757 18/20 AAAAAAAAAAAAGAACAAAA
19973449 20/22 GGGGGGGGGGGGGGGGGGGGAA
20030595 18/20 AAAAAAAATTAAAAAAAAAA
20063516 20/22 TTTTTTTTTGTTTTTTTTTCTT
20121494 19/21 TTTTTTTTTTTAATTTTTTTT
20194624 19/21 AAAAAAAAAACAAAAAAAAGA
20194771 18/20 TTTTTTTTTCTTTTTTTTTC
20195722 18/20 TTTTTTTTTTCGTTTTTTTT
20195943 18/20 TTTTTTTTGTTTTTTTTTTC
20196148 18/20 AAAAAAAGAAGAAAAAAAAA
20196201 18/20 AAAAAAAAATGAAAAAAAAA
20197329 19/21 AAAAAAAAATGAAAAAAAAAA
20207031 20/22 TTTTTTTTTTTTTTTATTTTTC
20268094 18/20 TTTTTTTTTTGCTTTTTTTT
20296883 18/20 AAAAAAGAAAAAAAGAAAAA
20298406 19/21 GGGGGGGGGGGGGGGGGGCGC
20303012 23/25 AAAAAAAAAAAAAAAAAAAAAAATT
20308616 24/26 AAAAAAAAAAAAAAAAAAAAAAAATT
20309031 20/22 AAAAAAAAAACCAAAAAAAAAA
20325709 22/24 TTTTTTTATTTTTTTATTTTTTTT
20384391 19/21 TTTTTGTTTTTTTTTTGTTTT
20384755 19/21 AAAAAAAAAAAAAAAAAAATT
20421783 19/21 TTTTTTTTTTTTTTTTTGTGT
20424495 18/20 TTTTTTTTCTTTTTTTTTTC
20441242 19/21 TTTTTTTTTTGTTTTTTTTTG
20474459 18/20 GGGGGGGGGGGGGGGGGGTT
20476871 18/20 GGGGGAGGGGGGGGGGGGGT
20509223 20/22 AAAAAAAAAATGAAAAAAAAAA
20533411 19/21 AAAAATAAAAAAAAAAGAAAA
20534773 18/20 TTTTTTTTTTTGGTTTTTTT
20631809 18/20 AAAAAAAAAAGAAAAAAAAG
20679717 19/21 TTTTTTTTTTGTTTTTTTTTG
20687814 18/20 TTTTTTTGTTGTTTTTTTTT
20705351 20/22 TTTTTTTTTCTTTTTTGTTTTT
20737849 19/21 AAAAAAAAACAAAAAAAAAAC
20747223 19/21 TTTTTTTTTTTTATTTTTTAT
20757241 19/21 TTTTTTTTCTTTTTTTTTTCT
20769865 19/21 TTTTTTTTCTTTTTTTTTTCT
20773180 18/20 AAAAAATAAAAAAAAAAAAT
20858526 18/20 TTTTTTTGTTGTTTTTTTTT
20943111 18/20 TTTTTTTTTCATTTTTTTTT
20945370 21/23 AAAAAATTAAAAAAAAAAAAAAA
20983841 20/22 AAAAACAAAAAAGAAAAAAAAA
21018030 21/23 TTTTTTTTTTCTTGTTTTTTTTT
21067471 18/20 AAAAAAAACAAAAAAAAAAT
21077768 20/22 CCCCCCCCCCCCCCCCCCCCAA
21119805 33/36 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCGTCC
21140079 20/22 AAAAAAAAAAAACAAAACAAAA
21177388 19/21 TTTTTTTTTCGTTTTTTTTTT
21226082 18/20 AAAAAAAATCAAAAAAAAAA
21274220 20/22 AAAAAACAAAAAAAAAACAAAA
21274266 18/20 AAAAAACAAAAAACAAAAAA
21274297 18/20 AAAAAAAAACCAAAAAAAAA
21274318 22/24 AAAAAAAACAAAAAACAAAAAAAA
21274447 37/41 AAAAAAAAACCAAAAAAAAAAAAAAAAAAAAAACAAAAAAC
----------------------------------------------------------------------------
Total sequence length......................... 21280512
Total number of repeats detected.............. 566
----------------------------------------------------------------------------
Minimum single nucleotide repeat length....... 20
Maximum mismatch allowed...................... 10%
----------------------------------------------------------------------------
Length distribution of single nucleotide repeats
Repeat_length A T G C
20 to 29 255 211 38 44
30 to 39 6 7 1 2
40 to 49 1 0 0 0
50 to 59 0 0 0 0
60 to 69 0 0 0 0
70 to 79 0 0 0 0
80 to 89 0 0 0 0
90 to 99 0 0 0 0
100 and more 0 0 0 1
----------------------------------------------------------------------------
Total 262 218 39 47
----------------------------------------------------------------------------
Mono-Nucleotide Repeats in C. elegans Chromosome-V complete sequence
Minimum repeat length = 20 (allowing maximum 10% mismatch)
Total 1 sequences searched with 21280512 base pairs
Total 566 repeats covering 12299 / 13574 base pairs
Length distribution of all Mono-nucleotide repeats
---------------------------------------------------------------------------------------------------------
repeat-length 20-29 30-39 40-49 50-59 60-69 70-79 80-89 90-99 100-and-more
no. of repeats 548 16 1 0 0 0 0 0 1
---------------------------------------------------------------------------------------------------------
Number of repeats
----------------------------------------------------------------------------------------
Sequence A T G C
----------------------------------------------------------------------------------------
lcl|chr_V 21280512 bp 262 218 39 47
----------------------------------------------------------------------------------------
Total 21280512 bp 262 218 39 47
----------------------------------------------------------------------------------------
Repeats >= 40 bp Total> 2 1 0 0 1
----------------------------------------------------------------------------------------
© Division of Biochemical Sciences, National Chemical Laboratory, Pune 411008, INDIA