Tetra-Nucleotide Repeats in Genomic Sequences
Tetra-Nucleotide Repeats in
C. elegans Chromosome-IV complete sequence
Genomic sequence...
lcl|chr_IV
Position Repeat Coverage Repeat
90966 AGGT * 6 22/24 AGGT AGGT AGGT AGGT AGGC GGGT
165347 ATTT * 5 18/20 ATTT ATTT ATTT ATCG ATTT
235346 ACTT * 5 18/20 ACTT AGTT ACTT AGTT ACTT
398234 TATT * 5 18/20 TATT TATT TATT TATT TTTC
454464 AGGC * 5 18/20 AGGC ATGT AGGC AGGC AGGC
468036 AGGC * 6 22/24 AGGC AGGC AGGC AAGG AGGC AGGC
479560 CCTG * 5 18/20 CCTG CCTG CCTG CCTA CCTC
481149 CCTA * 5 18/20 CCTA CCTA CCTA CGTG CCTA
481863 CCTA * 5 19/20 CCTA CGTA CCTA CCTA CCTA
492682 ATTT * 5 19/20 ATTT TTTT ATTT ATTT ATTT
521608 CTGC * 5 18/20 CTGC CTCC CCGC CTGC CTGC
536522 TAGG * 8 29/32 TAGG TAGC TAGG TAGG TAGG TAGG CAGG TATG
536606 GTAG * 9 33/36 GTAG ATAG GTAG ATAG GTAG GTAG GTAG GCAG GTAG
536649 GGTA * 5 19/20 GGTA GGTA GGTA GGCA GGTA
537601 TACC * 5 19/20 TACC TACC TACC TGCC TACC
543813 GGTA * 5 18/20 GGTA GGTA GGCA AGTA GGTA
543926 GGTA * 5 18/20 GGTA GGCA GGTA TGTA GGTA
544078 GTAG * 5 18/20 GTAG GTAG GTAG GCAT GTAG
545831 TGCC * 5 18/20 TGCC TGCG TGCC TGCC TACC
559363 GTAG * 5 18/20 GTAG GCAG GTAG GTAA GTAG
580932 TAAA * 5 19/20 TAAA TAAA TAAA TAAA TACA
594213 GTTT * 5 19/20 GTTT GTTT GTTT GTTT GTCT
610594 TGCC * 6 22/24 TGCC TGCC TGCC TGCA TGCC TACC
624597 AGGC * 5 19/20 AGGC AGGT AGGC AGGC AGGC
980787 TGGT * 5 20/20 TGGT TGGT TGGT TGGT TGGT
1161899 AAAT * 8 29/32 AAAT AAAT AAAT AAAT AAAT AAAT AATT AATA
1173605 ATTT * 5 18/20 ATTT ATTA ATTT ACTT ATTT
1383006 GATA * 9 34/36 GATA GATA GATG GATA GATA GATA GATA GATA GAGA
1430577 CAAT * 8 29/32 CAAT CAAT CAAT CAAT CAAT CAAT CGAT AAGT
1442668 ATGG * 6 23/24 ATGG ATGG ATGG ATGG ATGG ATGT
1562939 TTTA * 5 18/20 TTTA TTTA TTTA ATTA TTCA
1578023 AGGT * 9 33/36 AGGT AGGT AGGT AGGT AGGT AGGC AAGT AGGT AGGC
1632402 ATTA * 5 18/20 ATTA ATTA ATTA AATA AATA
1632425 ATTA * 5 18/20 ATTA ATTA ATTA AATA AATA
1632473 TAAA * 5 18/20 TAAA TAAA TAAA TAAA TATT
1632515 TAAA * 5 18/20 TAAA TAAA TAAA TAAA TATT
1632557 TAAA * 5 18/20 TAAA TAAA TAAA TAAA TATT
1632580 TAAA * 5 18/20 TAAA TAAA TAAA TAAA TATT
1792818 GTAG * 5 18/20 GTAG GTAG GTAG GAAG GCAG
2056475 TGCC * 5 18/20 TGCC TGCC TGCC TACC TACC
2060276 TGCC * 5 19/20 TGCC TGCG TGCC TGCC TGCC
2060301 TGCC * 5 18/20 TGCC TGCG TGCC TGCC TACC
2061502 AAAG * 5 18/20 AAAG AAAT GAAG AAAG AAAG
2063625 TGCC * 5 18/20 TGCC TGCC TGCC TATC TGCC
2066121 TAGG * 5 18/20 TAGG CAGG TAGG TATG TAGG
2072300 TTCT * 5 18/20 TTCT TTCT TCGT TTCT TTCT
2106113 CAGG * 5 18/20 CAGG CAGG CATG TAGG CAGG
2183413 AGGC * 5 19/20 AGGC AGGT AGGC AGGC AGGC
2264526 ATTT * 5 18/20 ATTT AGGT ATTT ATTT ATTT
2264697 TACT * 6 22/24 TACT TACT TACT TACT TAGT TAGT
2281079 ATAG * 5 18/20 ATAG ATAG ATAG AAAG ATGG
2340219 ATTT * 5 18/20 ATTT TTTT ATTT ATTT ATTC
2354441 TATC * 5 18/20 TATC TATA TATC TATA TATC
2419553 AGGC * 5 18/20 AGGC ACGC AGGC AGGC ATGC
2441071 TAGG * 5 18/20 TAGG TAGG TAGG TATG AAGG
2441213 TAGG * 5 20/20 TAGG TAGG TAGG TAGG TAGG
2441515 AGGT * 5 19/20 AGGT AGGT AGAT AGGT AGGT
2441540 TAGG * 5 20/20 TAGG TAGG TAGG TAGG TAGG
2492226 CAGG * 5 20/20 CAGG CAGG CAGG CAGG CAGG
2666412 GCTC * 6 22/24 GCTC TCTC GCTC GCTC CCTC GCTC
2839034 GCCT * 7 26/28 GCCT GCCT GCCT GCCT GCCT GCCT GACC
2856747 ATTT * 5 19/20 ATTT ATTT ATTT ATTT ATTC
2927144 TTGT * 5 18/20 TTGT TTGT TTGT TTTT TAGT
2947695 AATA * 5 18/20 AATA AACA AATA AACA AATA
3171984 AGGT * 5 18/20 AGGT AGGT ACGC AGGT AGGT
3203888 TGCC * 5 19/20 TGCC TGTC TGCC TGCC TGCC
3242071 CCTA * 5 19/20 CCTA CCTA CGTA CCTA CCTA
3255960 ATTT * 5 18/20 ATTT ATTT ATTT ATAT TTTT
3262276 AATT * 5 18/20 AATT AATT TATT AATT AAAT
3306401 GTAG * 6 22/24 GTAG GTAG GAAG ATAG GTAG GTAG
3306430 TAGG * 8 29/32 TAGG TAGG TAGG TAGG TAGG CAAG TAGG TATG
3308645 CAGG * 8 30/32 CAGG TAGG CAGA CAGG CAGG CAGG CAGG CAGG
3336007 CCTG * 5 18/20 CCTG CCTG CCTG CCTA CCTA
3360098 GCCT * 5 18/20 GCCT GCCT GCCT GCTT GCAT
3387742 TGCC * 5 19/20 TGCC TGCC TGCC TGCT TGCC
3393271 ACCT * 5 18/20 ACCT GCGT ACCT ACCT ACCT
3439873 TGCC * 10 37/40 TGCC TGCC TACC TGCC TGCC TGCC TGCC TGCC TGCC TACG
3440181 CCTA * 5 18/20 CCTA CGTA CCTA CATA CCTA
3480887 TTAA * 5 18/20 TTAA TTAA TTAA TTAA ATTA
3488705 ATTT * 5 18/20 ATTT ATAA ATTT ATTT ATTT
3493783 AATA * 5 18/20 AATA AATA AATA AATA AGTT
3494182 AATT * 5 18/20 AATT AATC AATT AATT AAGT
3576531 AAAT * 5 20/20 AAAT AAAT AAAT AAAT AAAT
3639458 AGGC * 5 19/20 AGGC AGGC AGGC AGGT AGGC
3684729 TATT * 5 19/20 TATT TATT TATT TATT CATT
3691440 AAAC * 5 18/20 AAAC AAAC AAAC AAAC CATC
3708385 ATAA * 5 19/20 ATAA ATAA ATAA ATAA AAAA
3860553 TAAA * 5 18/20 TAAA TAAA TAAA TAAC CAAA
3990740 TCTT * 5 18/20 TCTT TCTT TTCT TCTT TCTT
3999621 AAGA * 5 18/20 AAGA AAGA AGAA AAGA AAGA
4275477 GGCA * 5 18/20 GGCA GGCA GGCA GGGA GGCG
4288851 CCAA * 5 18/20 CCAA ACAA CCAA CCAG CCAA
4353027 GAAA * 5 18/20 GAAA GAAA GAAA GAGA GAGA
4358747 AAAT * 5 18/20 AAAT AAAT AAAT AAAT CATT
4373573 AAAT * 5 18/20 AAAT CAAT AAAT CAAT AAAT
4417698 AAAT * 5 18/20 AAAT TAAT AAAT AAAT AAAA
4478569 TCAA * 5 18/20 TCAA TGAA TCAA TGAA TCAA
4492104 TTCT * 5 18/20 TTCT TTCT TTCT CTCT TTCC
4513871 TAAG * 5 18/20 TAAG TAAG TAAG TAAG TATA
4531250 AGGC * 5 18/20 AGGC AGGC ACGT AGGC AGGC
4542791 TTCT * 5 18/20 TTCT TTCT TTCT CTCT CTCT
4605720 TATT * 5 18/20 TATT TATT GATT TATT GATT
4661047 ATTT * 5 18/20 ATTT ATTT ATTT ATTT AAAT
4670960 AAAT * 5 18/20 AAAT AAAT AAAA AACT AAAT
4813679 AATT * 5 18/20 AATT AATT AAAA AATT AATT
5091064 CTTT * 5 18/20 CTTT CTAT CTTT CTTT TTTT
5288159 AAAT * 5 18/20 AAAT AAAT AAAT AAAT AATG
5298729 TTGT * 5 18/20 TTGT TTGT TTGT TTGT CTCT
5339893 TCTT * 5 18/20 TCTT TTTT TCTT TCTT TTTT
5619441 AGGC * 5 18/20 AGGC ACGC AGGC AGGC AGGT
5620352 TAAA * 5 20/20 TAAA TAAA TAAA TAAA TAAA
5630810 GATT * 5 19/20 GATT GATT GATT GATT TATT
5631064 GATT * 5 19/20 GATT GATT GATT GATT TATT
5733474 GGCA * 5 18/20 GGCA GGCA GGCA GACA TGCA
5773725 TTTA * 6 22/24 TTTA TTTA TTTA ATTA TTTA TTAA
5777054 AGTT * 5 18/20 AGTT AGTT AGTC AGTC AGTT
5777181 CAAT * 5 19/20 CAAT CAAT CAAT CAAT AAAT
5931109 CTTT * 5 18/20 CTTT CTTT TTTT CTCT CTTT
6088841 GGAA * 5 18/20 GGAA GGAA AGAA GGAA AGAA
6098045 ATTG * 6 22/24 ATTG ATTG ATTG ATTG ATTG GTTT
6200541 TTAT * 5 18/20 TTAT TTAT TCAT TTAT TTGT
6254080 ATTT * 5 18/20 ATTT ATTT TTTT ATTA ATTT
6260712 TAAA * 5 19/20 TAAA TAAA TAAA TAAA TAAT
6297142 GTTT * 5 18/20 GTTT GTTT GTTT ATTT TTTT
6329068 AAGA * 5 18/20 AAGA AAGA AGAA AAGA AAGA
6329091 AAAG * 5 18/20 AAAG AAAG AAGA AAAG AAAG
6396915 ATAA * 5 18/20 ATAA ATAT ATAA ATAA ACAA
6611511 AATA * 5 18/20 AATA GATA AATA AAAA AATA
6652067 AATA * 5 18/20 AATA AATA AATA AAAA AGTA
6680635 ATTT * 5 18/20 ATTT ATAT ATAT ATTT ATTT
6727990 TAAA * 5 19/20 TAAA TAAA TAAA TAAA TAAG
6770551 CTAC * 5 18/20 CTAC GTAC CTGC CTAC CTAC
6771263 TCAA * 5 18/20 TCAA TCAA TAAA ACAA TCAA
6808465 AAAT * 5 18/20 AAAT AAAT AAAA AAAT AAAA
6843257 ACAG * 6 22/24 ACAG ACAA ACAG ACAC ACAG ACAG
6908512 AATC * 5 18/20 AATC AATA AATA AATC AATC
7069728 AACA * 5 19/20 AACA AACA AACA AACA AAAA
7129614 ACAG * 5 18/20 ACAG ACAG ACAG GCAG ACAT
7176572 TAAA * 5 18/20 TAAA TAAA TATA TTAA TAAA
7189712 TTCT * 6 22/24 TTCT TTTT TTCT ATCT TTCT TTCT
7237506 TCTT * 5 18/20 TCTT TCTT TCTT TCTG TCCT
7306454 CAAA * 5 18/20 CAAA AAAA CAAA CAAA AAAA
7350406 CAAA * 5 18/20 CAAA AAAA CAAA CAAA AAAA
7516596 TAAA * 5 18/20 TAAA AAAG TAAA TAAA TAAA
7542666 ATTT * 5 18/20 ATTT ATTT TTTG ATTT ATTT
7659066 TCAT * 5 18/20 TCAT TAAT TCAT TCAT TGAT
7666559 TCAT * 5 18/20 TCAT TAAT TCAT TCAT TGAT
7759972 ATTT * 5 18/20 ATTT ATTG ATTT TTTT ATTT
7829555 ATAA * 5 19/20 ATAA ATAA ATAA ATAA ATCA
7929742 TTTG * 5 19/20 TTTG TTTG TTTG TTTG TTTT
7962245 GATT * 5 19/20 GATT GATT GATT GTTT GATT
7969055 AAAT * 5 20/20 AAAT AAAT AAAT AAAT AAAT
7981539 CATC * 8 29/32 CATC CATC CATC CATC CATC CATT CATT CATT
8005718 GGAC * 5 18/20 GGAC GGAT GGAC GGAA GGAC
8272655 ATTA * 5 18/20 ATTA ATTA ATTA TTTA CTTA
8340734 AATT * 5 18/20 AATT AATC AGTT AATT AATT
8415459 TAAA * 5 18/20 TAAA TAAA TAAA TTAA TTAA
8511717 TTAT * 5 18/20 TTAT TTAT TTAT TTAT TTTG
8548691 ATAA * 6 22/24 ATAA ATAA TTGA ATAA ATAA ATAA
8554708 AGGC * 5 18/20 AGGC AGTC AGGC AGGC AGGA
8565602 ATTT * 5 18/20 ATTT ATTT TTTT ATAT ATTT
8625663 ATTT * 5 18/20 ATTT ATTT TTAT ATTT ATTT
8688995 TGCC * 5 18/20 TGCC TGCC TGCC TGCC TTGC
8701430 AGAA * 6 22/24 AGAA AGAG ATAA AGAA AGAA AGAA
8782137 TAAA * 5 18/20 TAAA TAAA TAAA TAAA TGTA
8942255 TAGG * 5 18/20 TAGG TAGG TATG TAGG CAGG
8964430 TTTG * 5 18/20 TTTG TTTA TTTA TTTG TTTG
9000985 TTTA * 5 18/20 TTTA TTTA TTTA TTTT TATA
9005118 TAAA * 5 18/20 TAAA TAAA TAAA AAAA TTAA
9166932 TAAA * 5 18/20 TAAA TAAT TAAA CAAA TAAA
9185978 TAAA * 5 19/20 TAAA GAAA TAAA TAAA TAAA
9532337 GGCA * 5 18/20 GGCA GGCA GGCA GGCA GATA
9593560 AATT * 5 18/20 AATT AATT AATT AACC AATT
9641301 AAAT * 5 18/20 AAAT AAAT AAAT AAAA TAAT
9658584 TATT * 5 19/20 TATT TATT TAAT TATT TATT
9705514 AAGA * 5 18/20 AAGA AAAA AAGA AAGA AAAA
9746259 CGCC * 5 18/20 CGCC CGCC CGCC CTCC CACC
9757088 TAAA * 5 18/20 TAAA TAAA TAAA TAAT TAAT
9765511 ATTT * 5 18/20 ATTT TTTT ATTT TTTT ATTT
9809856 TTTC * 5 18/20 TTTC TTTC TTTT TTCC TTTC
9988123 TTCT * 6 22/24 TTCT TTCT TTCT TTCT TTAT TTCA
10010403 TCCT * 5 18/20 TCCT TCCT TCCT TCTT TCCA
10042994 GCAT * 5 18/20 GCAT GCAT GTAT GCAT GAAT
10067329 AGTG * 5 18/20 AGTG AGAG AGTG AGAG AGTG
10185653 CAGG * 5 18/20 CAGG CACG TAGG CAGG CAGG
10224165 AATT * 5 18/20 AATT AATT ATTT AATA AATT
10301713 AGGC * 5 18/20 AGGC AGGT AGGC ATGC AGGC
10321497 CTGC * 8 30/32 CTGC CTGC CCGC CTGC CTGC CTGC CTGC CTAC
10365221 GAAA * 5 18/20 GAAA TAAA GAAA GAAA AAAA
10452603 ATTT * 5 18/20 ATTT ATTT ATTT ATTT AACT
10762537 CCTG * 5 18/20 CCTG CCTG CCTA CTTG CCTG
10805796 GGCA * 5 18/20 GGCA GGTA GGCA GGCA CGCA
10827631 CGTG * 5 18/20 CGTG CCTG CGTG CCTG CGTG
10900644 AGGC * 5 18/20 AGGC AGGC ATGT AGGC AGGC
10926652 CTGC * 5 18/20 CTGC GTGC CTGC CTAC CTGC
10969917 AGGC * 5 18/20 AGGC AGGC AAGT AGGC AGGC
10981472 CGTG * 5 18/20 CGTG CCTG CGTG CCTG CGTG
11083659 GGCA * 6 22/24 GGCA GGCA GGCA AGAA GGCA GGCA
11347451 GTCC * 5 18/20 GTCC GTCC GTCC GTCC GGAC
11367235 ATTT * 6 22/24 ATTT ATTT ATTT ATTT ATTT TTGT
11389898 AGGC * 5 18/20 AGGC AGGC AGGC AGGC TAGC
11431160 AGGC * 5 18/20 AGGC ATGC AGGC AGGC AGAC
11464325 ATTC * 5 18/20 ATTC GCTC ATTC ATTC ATTC
11509805 CCTA * 5 18/20 CCTA CCTG CCTA CATA CCTA
11566268 GGTT * 5 19/20 GGTT GGTT GGTT GATT GGTT
11656266 TGCC * 5 18/20 TGCC TGCC TGCC TGCC TACT
11672212 ACCA * 5 18/20 ACCA ACCA ACCA ACCG ACCG
11701521 AAAT * 6 23/24 AAAT AAAT AAAT AAAT AAAT AATT
11724784 TGCC * 5 18/20 TGCC TGCC TGCC TGCC TACG
11752569 TAAT * 5 18/20 TAAT TATT TTAT TAAT TAAT
11761960 AATA * 83 300/332 AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATG AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATG AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA ATTA ATTA CTGC TGAA AACT TAGT TATG TAAA AATT CTGT TGCT CGAA
11771233 TTCT * 5 18/20 TTCT TTCT TTGT GTCT TTCT
11778092 AGGC * 6 22/24 AGGC AGGC ACGT AGGC AGGC AGGC
11785585 ATTT * 5 19/20 ATTT ATTT ATTT AATT ATTT
11804985 TGCC * 5 18/20 TGCC TGCC TGCC TACA TGCC
11873356 TTAT * 5 18/20 TTAT TTAT TTAT TTAT CTAG
11897301 TGCC * 5 18/20 TGCC TGCC TGCC TGCC TACG
11925096 TAAT * 5 18/20 TAAT TATT TTAT TAAT TAAT
11934488 AATA * 83 300/332 AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATG AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATG AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA ATTA ATTA CTGC TGAA AACT TAGT TATG TAAA AATT CTGT TGCT CGAA
11943764 TTCT * 5 18/20 TTCT TTCT TTGT GTCT TTCT
11950628 AGGC * 6 22/24 AGGC AGGC ACGT AGGC AGGC AGGC
11956227 AGGC * 6 22/24 AGGC AGGC ACGT AGGC AGGC AGGC
11981272 AATC * 5 18/20 AATC GATC AATG AATC AATC
12035153 CTTA * 5 18/20 CTTA CTTA CTCA CTTA CCTA
12035181 TACC * 13 47/52 TACC TACT TACC TACC TACC TACC CACC TACC TACC TACC TACC TACT AGCC
12035431 CCTA * 6 22/24 CCTA CCTA CCTA CCTA TCTA TCTA
12050150 AATT * 5 18/20 AATT AATT AATT AAAT AAGT
12103923 AGGC * 6 22/24 AGGC AGGC ACGT AGGC AGGC AGGC
12128960 AATC * 5 18/20 AATC GATC AATG AATC AATC
12182827 CTTA * 5 18/20 CTTA CTTA CTCA CTTA CCTA
12182855 TACC * 13 47/52 TACC TACT TACC TACC TACC TACC CACC TACC TACC TACC TACC TACT AGCC
12183105 CCTA * 5 19/20 CCTA CCTA CCTA CCTA TCTA
12197817 AATT * 5 18/20 AATT AATT AATT AAAT AAGT
12318240 TTTA * 5 18/20 TTTA TTTA ATTA TTTA ATTA
12318288 TAAA * 5 18/20 TAAA TAAA TAAA TAAA TATT
12318368 TAAA * 5 18/20 TAAA TAAA TAAA TAAA TATT
12318396 AATA * 5 18/20 AATA AATA AATA AATA AAGG
12323166 TATT * 5 18/20 TATT TATT TATT TAAT TAAT
12323204 TATT * 9 33/36 TATT TATT TATT TATT TATT TATT TAAT TAAT TAAT
12323240 ATTT * 10 37/40 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT AATT AATA
12323316 TATT * 6 22/24 TATT TATT TATT TATT TAAT TAAT
12323340 ATTT * 5 19/20 ATTT ATTT ATTT ATTT AATT
12323362 TATT * 6 22/24 TATT TATT TATT TATT TAAT TAAT
12323404 TATT * 6 22/24 TATT TATT TATT TATT TAAT TAAT
12323488 TATT * 5 18/20 TATT TATT TATT TATT CAAT
12323580 TATT * 5 18/20 TATT TATT TATG TATT TAAT
12323603 TATT * 5 18/20 TATT GATT TATT TATT TAAT
12323623 ATTT * 5 18/20 ATTT ATTG ATTT ATTT AATT
12323711 TATT * 6 22/24 TATT TATT TATT TATT TAAT TAAT
12323753 TATT * 5 19/20 TATT TATT TATT TATT TAAT
12325143 TATT * 5 19/20 TATT TATT TATT TATT TAAT
12325166 TATT * 5 19/20 TATT TATT TATT TATT TAAT
12325231 TATT * 5 19/20 TATT TATT TATT TATT TAAT
12326954 TATT * 5 18/20 TATT TATT TATT TAAT TAAT
12326974 ATTT * 5 19/20 ATTT ATTT ATTT ATTT AATT
12326996 TATT * 5 18/20 TATT TATT TATT TATT TAAC
12337039 ATTA * 6 22/24 ATTA ATTA ATTA ATTA ATTA CTGA
12356192 AAAG * 5 19/20 AAAG AAAG AAAG AAAG AGAG
12409602 AGGC * 6 23/24 AGGC AGGC AGGC AGGC AGGC AGGA
12420997 TTTA * 5 18/20 TTTA TTTG TTTA TTTA TTTT
12423435 CCTC * 5 18/20 CCTC CCTC CCTC TCCC CCTC
12476017 ATTT * 5 19/20 ATTT ATTT ATTT AATT ATTT
12564338 TTTA * 5 18/20 TTTA TTTA ATTA TTTA ATTA
12564386 TAAA * 5 18/20 TAAA TAAA TAAA TAAA TATT
12564466 TAAA * 5 18/20 TAAA TAAA TAAA TAAA TATT
12564494 AATA * 5 18/20 AATA AATA AATA AATA AAGG
12569261 TATT * 5 18/20 TATT TATT TATT TAAT TAAT
12569299 TATT * 9 33/36 TATT TATT TATT TATT TATT TATT TAAT TAAT TAAT
12569335 ATTT * 10 37/40 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT AATT AATA
12569411 TATT * 6 22/24 TATT TATT TATT TATT TAAT TAAT
12569435 ATTT * 5 19/20 ATTT ATTT ATTT ATTT AATT
12569457 TATT * 6 22/24 TATT TATT TATT TATT TAAT TAAT
12569499 TATT * 6 22/24 TATT TATT TATT TATT TAAT TAAT
12569541 TATT * 6 22/24 TATT TATT TATT TATT TAAT TAAT
12569583 TATT * 6 22/24 TATT TATT TATT TATT TAAT TAAT
12569607 ATTT * 5 18/20 ATTT GTTT ATTT ATTT AATT
12569629 TATT * 5 18/20 TATT TATT TATT TAAT TAAT
12569649 ATTT * 6 23/24 ATTT ATTT ATTT ATTT ATTT AATT
12569675 TATT * 6 22/24 TATT TATT TATT TATT TAAT TAAT
12569699 ATTT * 5 18/20 ATTT ATTT ATTT ATTT AATA
12569719 TTTA * 5 19/20 TTTA TTTA TTTA TTTA ATTA
12569759 TATT * 6 22/24 TATT TATT TATT TATT TAAT TAAT
12569783 ATTT * 5 19/20 ATTT ATTT ATTT ATTT AATT
12569805 TATT * 6 22/24 TATT TATT TATT TATT TAAT TAAT
12569847 TATT * 5 19/20 TATT TATT TATT TATT TAAT
12571237 TATT * 5 19/20 TATT TATT TATT TATT TAAT
12571260 TATT * 5 19/20 TATT TATT TATT TATT TAAT
12571283 TATT * 6 22/24 TATT TATT TATT TATT TAAT TAAT
12571307 ATTT * 5 18/20 ATTT ATTT ATTT ATTT AATA
12571327 TTTA * 5 19/20 TTTA TTTA TTTA TTTA ATTA
12573048 TATT * 5 18/20 TATT TATT TATT TAAT TAAT
12573068 ATTT * 5 19/20 ATTT ATTT ATTT ATTT AATT
12573090 TATT * 5 18/20 TATT TATT TATT TATT TAAC
12583133 ATTA * 6 22/24 ATTA ATTA ATTA ATTA ATTA CTGA
12602281 AAAG * 5 19/20 AAAG AAAG AAAG AAAG AGAG
12655683 AGGC * 6 23/24 AGGC AGGC AGGC AGGC AGGC AGGA
12693636 TGCC * 6 22/24 TGCC TGCC TGCC TGCC TGCC TACG
12762957 CCTA * 5 18/20 CCTA CCTA CCTA CCCA CATA
12762986 CCTA * 13 48/52 CCTA CCTA CCTA CCTA CCTA CCTA CCTA CCTA CCTA CCTG CCTA CATC CCTC
12763722 ACCT * 6 22/24 ACCT ACAT ACCT ACCT ACTT ACCT
12929145 AAAC * 5 19/20 AAAC AAAC AAAC AAAC AAAA
12959570 AGGT * 6 22/24 AGGT AAGT AGGT AGGT ATGT AGGT
12985867 TATT * 5 18/20 TATT TATT TATT TAAT TAAT
12985894 TATT * 5 18/20 TATT TTTT TATT TATT TAAT
12985917 TATT * 5 18/20 TATT TATT TATT TATT TAAA
13113112 ATTT * 5 18/20 ATTT ATTA ATTT ATTT GTTT
13128331 AAAG * 5 18/20 AAAG GAAG TAAG AAAG AAAG
13221232 TTAA * 5 18/20 TTAA TTAA TAAA TTAA TTAC
13260962 AAAT * 5 19/20 AAAT AAAT AAAT AAAT TAAT
13428519 AAAT * 5 18/20 AAAT AAAT GAAT AAAG AAAT
13454945 TAAT * 5 18/20 TAAT TAAT TAAT TAAT AATT
13473672 TATG * 5 18/20 TATG TATG TATA TATG TAGG
13622666 AATT * 5 18/20 AATT AATT TATT AATT GATT
13707802 TATT * 5 18/20 TATT TACT TATA TATT TATT
13718002 AGAA * 5 18/20 AGAA AGAA AGAA GGGA AGAA
13772441 ACAA * 5 19/20 ACAA ACAA ACAA ACAA ACAC
13782866 ATAA * 5 18/20 ATAA ATAA ATAA ATAA AAAC
13822371 TTTA * 6 23/24 TTTA TTTA TTTA TTTA TTTG TTTA
13874847 TTAA * 5 19/20 TTAA TTAA TTAA TTAA TTTA
13937339 TTAT * 5 18/20 TTAT TTAT GAAT TTAT TTAT
13979225 GAGG * 5 18/20 GAGG GAGG GAGG GAGA GACG
13998358 GTAA * 5 18/20 GTAA GTAA CTAA GTAA ATAA
14052118 TGCC * 5 18/20 TGCC TGCC TACC TACC TGCC
14062354 ATAA * 5 18/20 ATAA TTAA ATAA TTAA ATAA
14152353 TTAT * 6 23/24 TTAT TTAT TTAT TTAT TTAT TCAT
14207307 CTCA * 6 22/24 CTCA CTCA CACA CACA CTCA CTCA
14234355 TTAT * 5 19/20 TTAT TTTT TTAT TTAT TTAT
14284010 TTTA * 5 18/20 TTTA TTTA TTTA TTTT ATTA
14380797 AAAT * 5 18/20 AAAT AAAT AAAT AAAT GCAT
14474427 TACC * 5 18/20 TACC TACC TACC TACA TATC
14506149 TCTT * 5 18/20 TCTT TTTT TCTC TCTT TCTT
14609132 TGCC * 5 19/20 TGCC TACC TGCC TGCC TGCC
14637736 TAAG * 5 19/20 TAAG TAAC TAAG TAAG TAAG
14654305 TAAA * 5 18/20 TAAA TAAA TAAA TCAA TCAA
14688877 AAAT * 5 18/20 AAAT AAAT AAAT AAAC AATT
14965986 AGGC * 6 24/24 AGGC AGGC AGGC AGGC AGGC AGGC
15091207 TTGA * 5 19/20 TTGA TTGA TTGA TTGA TTTA
15146253 TATT * 5 18/20 TATT TATT TATT TTTT TAAT
15173031 TTAT * 5 18/20 TTAT TTAT TTAT TTAT TGAA
15204376 AAAT * 5 18/20 AAAT AAAT AAAT AAAA AATT
15444685 AAAT * 5 18/20 AAAT AAAT AAAT AAAT GTAT
15620436 AATA * 6 22/24 AATA AATA AATA AAAA AATA AATG
15635246 TCTA * 5 18/20 TCTA TCTA TCTG TGTA TCTA
15787866 TAAG * 5 18/20 TAAG TATC TAAG TAAG TAAG
15795573 TGTT * 5 19/20 TGTT TGTT TGTT TGTT TATT
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Total sequence length......................... 15887371
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 345
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Frequency of Tetra-Nucleotide Repeats
AAAT-17 AAAG-5 AAAC-2 AATA-9 AATT-9 AATC-3 AAGA-3 AACA-1
ATAA-6 ATAG-1 ATTA-5 ATTT-33 ATTG-1 ATTC-1 ATGG-1 AGAA-2
AGTT-1 AGTG-1 AGGT-5 AGGC-21 ACAA-1 ACAG-2 ACTT-1 ACCA-1
ACCT-2 TAAA-22 TAAT-3 TAAG-3 TATT-41 TATG-1 TATC-1 TAGG-7
TACT-1 TACC-4 TTAA-3 TTAT-7 TTTA-10 TTTG-2 TTTC-1 TTGA-1
TTGT-2 TTCT-7 TGTT-1 TGGT-1 TGCC-17 TCAA-2 TCAT-2 TCTA-1
TCTT-4 TCCT-1 GAAA-2 GATA-1 GATT-3 GAGG-1 GTAA-1 GTAG-5
GTTT-2 GTCC-1 GGAA-1 GGAC-1 GGTA-3 GGTT-1 GGCA-5 GCAT-1
GCTC-1 GCCT-2 CAAA-2 CAAT-2 CATC-1 CAGG-4 CTAC-1 CTTA-2
CTTT-2 CTGC-3 CTCA-1 CGTG-2 CGCC-1 CCAA-1 CCTA-9 CCTG-3
CCTC-1
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Tetra-Nucleotide repeats in C. elegans Chromosome-IV complete sequence
Minimum tetra-nucleotide repeating units = 5 (allowing a maximum of 10% mismatch)
Total 1 sequences searched with a total of 15887371 bp length
Total 345 repeats covering 7354 / 8044 base pairs
Length distribution of all tetra-nucleotide repeats
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No. of repeat units 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 >=25
total repeats 276 48 1 7 5 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0 2
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Frequency distribution of different tetra-nucleotide repeat classes
17-AAAT 9-AATA 6-ATAA 22-TAAA 33-ATTT 10-TTTA 7-TTAT 41-TATT = 145
5-AAAG 3-AAGA 2-AGAA 2-GAAA 2-CTTT 1-TTTC 7-TTCT 4-TCTT = 26
2-AAAC 1-AACA 1-ACAA 2-CAAA 2-GTTT 2-TTTG 2-TTGT 1-TGTT = 13
9-AATT 5-ATTA 3-TTAA 3-TAAT = 20
0-AATG 0-ATGA 0-TGAA 0-GAAT 0-CATT 1-ATTC 0-TTCA 2-TCAT = 3
3-AATC 0-ATCA 2-TCAA 2-CAAT 3-GATT 1-ATTG 1-TTGA 0-TGAT = 12
0-AAGT 0-AGTA 1-GTAA 3-TAAG 1-ACTT 2-CTTA 0-TTAC 1-TACT = 8
0-AAGG 0-AGGA 1-GGAA 0-GAAG 0-CCTT 0-CTTC 0-TTCC 1-TCCT = 2
0-AAGC 0-AGCA 0-GCAA 0-CAAG 0-GCTT 0-CTTG 0-TTGC 0-TGCT = 0
0-AACT 0-ACTA 0-CTAA 0-TAAC 1-AGTT 0-GTTA 0-TTAG 0-TAGT = 1
0-AACG 0-ACGA 0-CGAA 0-GAAC 0-CGTT 0-GTTC 0-TTCG 0-TCGT = 0
0-AACC 1-ACCA 1-CCAA 0-CAAC 1-GGTT 0-GTTG 0-TTGG 1-TGGT = 4
1-ATAG 0-TAGA 0-AGAT 1-GATA 0-CTAT 1-TATC 0-ATCT 1-TCTA = 4
0-ATAC 0-TACA 0-ACAT 0-CATA 0-GTAT 1-TATG 0-ATGT 0-TGTA = 1
1-ATGG 0-TGGA 0-GGAT 0-GATG 0-CCAT 1-CATC 0-ATCC 0-TCCA = 2
0-ATGC 0-TGCA 1-GCAT 0-CATG = 1
0-ATCG 0-TCGA 0-CGAT 0-GATC = 0
0-AGAC 0-GACA 2-ACAG 0-CAGA 0-GTCT 0-TCTG 0-CTGT 0-TGTC = 2
1-AGTG 0-GTGA 0-TGAG 0-GAGT 0-CACT 0-ACTC 1-CTCA 0-TCAC = 2
0-AGTC 0-GTCA 0-TCAG 0-CAGT 0-GACT 0-ACTG 0-CTGA 0-TGAC = 0
5-AGGT 3-GGTA 5-GTAG 7-TAGG 2-ACCT 9-CCTA 1-CTAC 4-TACC = 36
0-AGGG 0-GGGA 0-GGAG 1-GAGG 0-CCCT 1-CCTC 0-CTCC 0-TCCC = 2
21-AGGC 5-GGCA 0-GCAG 4-CAGG 2-GCCT 3-CCTG 3-CTGC 17-TGCC = 55
0-AGCT 0-GCTA 0-CTAG 0-TAGC = 0
0-AGCG 0-GCGA 0-CGAG 0-GAGC 0-CGCT 1-GCTC 0-CTCG 0-TCGC = 1
0-AGCC 0-GCCA 0-CCAG 0-CAGC 0-GGCT 0-GCTG 0-CTGG 0-TGGC = 0
0-ACGT 0-CGTA 0-GTAC 0-TACG = 0
0-ACGG 0-CGGA 1-GGAC 0-GACG 0-CCGT 0-CGTC 1-GTCC 0-TCCG = 2
0-ACGC 0-CGCA 0-GCAC 0-CACG 0-GCGT 2-CGTG 0-GTGC 0-TGCG = 2
0-ACCG 0-CCGA 0-CGAC 0-GACC 0-CGGT 0-GGTC 0-GTCG 0-TCGG = 0
0-ACCC 0-CCCA 0-CCAC 0-CACC 0-GGGT 0-GGTG 0-GTGG 0-TGGG = 0
0-GGGC 0-GGCG 0-GCGG 0-CGGG 0-GCCC 0-CCCG 0-CCGC 1-CGCC = 1
0-GGCC 0-GCCG 0-CCGG 0-CGGC = 0
----------------------------------------------------------------------------------------------------
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Tetra-nucleotide repeats longer than 40 bp (repeated 10 or more times)
0-AAAT 2-AATA 0-ATAA 0-TAAA 2-ATTT 0-TTTA 0-TTAT 0-TATT = 4
0-AAAG 0-AAGA 0-AGAA 0-GAAA 0-CTTT 0-TTTC 0-TTCT 0-TCTT = 0
0-AAAC 0-AACA 0-ACAA 0-CAAA 0-GTTT 0-TTTG 0-TTGT 0-TGTT = 0
0-AATT 0-ATTA 0-TTAA 0-TAAT = 0
0-AATG 0-ATGA 0-TGAA 0-GAAT 0-CATT 0-ATTC 0-TTCA 0-TCAT = 0
0-AATC 0-ATCA 0-TCAA 0-CAAT 0-GATT 0-ATTG 0-TTGA 0-TGAT = 0
0-AAGT 0-AGTA 0-GTAA 0-TAAG 0-ACTT 0-CTTA 0-TTAC 0-TACT = 0
0-AAGG 0-AGGA 0-GGAA 0-GAAG 0-CCTT 0-CTTC 0-TTCC 0-TCCT = 0
0-AAGC 0-AGCA 0-GCAA 0-CAAG 0-GCTT 0-CTTG 0-TTGC 0-TGCT = 0
0-AACT 0-ACTA 0-CTAA 0-TAAC 0-AGTT 0-GTTA 0-TTAG 0-TAGT = 0
0-AACG 0-ACGA 0-CGAA 0-GAAC 0-CGTT 0-GTTC 0-TTCG 0-TCGT = 0
0-AACC 0-ACCA 0-CCAA 0-CAAC 0-GGTT 0-GTTG 0-TTGG 0-TGGT = 0
0-ATAG 0-TAGA 0-AGAT 0-GATA 0-CTAT 0-TATC 0-ATCT 0-TCTA = 0
0-ATAC 0-TACA 0-ACAT 0-CATA 0-GTAT 0-TATG 0-ATGT 0-TGTA = 0
0-ATGG 0-TGGA 0-GGAT 0-GATG 0-CCAT 0-CATC 0-ATCC 0-TCCA = 0
0-ATGC 0-TGCA 0-GCAT 0-CATG = 0
0-ATCG 0-TCGA 0-CGAT 0-GATC = 0
0-AGAC 0-GACA 0-ACAG 0-CAGA 0-GTCT 0-TCTG 0-CTGT 0-TGTC = 0
0-AGTG 0-GTGA 0-TGAG 0-GAGT 0-CACT 0-ACTC 0-CTCA 0-TCAC = 0
0-AGTC 0-GTCA 0-TCAG 0-CAGT 0-GACT 0-ACTG 0-CTGA 0-TGAC = 0
0-AGGT 0-GGTA 0-GTAG 0-TAGG 0-ACCT 1-CCTA 0-CTAC 2-TACC = 3
0-AGGG 0-GGGA 0-GGAG 0-GAGG 0-CCCT 0-CCTC 0-CTCC 0-TCCC = 0
0-AGGC 0-GGCA 0-GCAG 0-CAGG 0-GCCT 0-CCTG 0-CTGC 1-TGCC = 1
0-AGCT 0-GCTA 0-CTAG 0-TAGC = 0
0-AGCG 0-GCGA 0-CGAG 0-GAGC 0-CGCT 0-GCTC 0-CTCG 0-TCGC = 0
0-AGCC 0-GCCA 0-CCAG 0-CAGC 0-GGCT 0-GCTG 0-CTGG 0-TGGC = 0
0-ACGT 0-CGTA 0-GTAC 0-TACG = 0
0-ACGG 0-CGGA 0-GGAC 0-GACG 0-CCGT 0-CGTC 0-GTCC 0-TCCG = 0
0-ACGC 0-CGCA 0-GCAC 0-CACG 0-GCGT 0-CGTG 0-GTGC 0-TGCG = 0
0-ACCG 0-CCGA 0-CGAC 0-GACC 0-CGGT 0-GGTC 0-GTCG 0-TCGG = 0
0-ACCC 0-CCCA 0-CCAC 0-CACC 0-GGGT 0-GGTG 0-GTGG 0-TGGG = 0
0-GGGC 0-GGCG 0-GCGG 0-CGGG 0-GCCC 0-CCCG 0-CCGC 0-CGCC = 0
0-GGCC 0-GCCG 0-CCGG 0-CGGC = 0
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Total repeats longer than 40 bp = 8
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© Division of Biochemical Sciences, National Chemical Laboratory, Pune 411008, INDIA