Tri-Nucleotide Repeats in Genomic Sequences
Tri-Nucleotide Repeats in
C. elegans Chromosome-IV complete sequence
Genomic sequence
lcl|chr_IV
Position Repeat Coverage Repeat
116000 CTC * 7 19/21 CTC CTC CTC CAC CTC CTC CCC
137567 TCT * 7 20/21 TCT TCT TCT TCT TTT TCT TCT
153858 CCA * 7 19/21 CCA CCA CCA CCA CCA CTT CCA
172370 TTA * 7 19/21 TTA TTG TTA TTA TTA TTA CTA
238911 CCT * 7 19/21 CCT CCT CCA CCT CCA CCT CCT
256396 AAT * 7 19/21 AAT AAT AAT AGT AAT AAT AAC
322774 TAA * 11 30/33 TAA TAA TAA TAA TAA TAA TAA TAA TAG TAA TTT
332791 AAT * 7 19/21 AAT AAA AAT AAT AAT AGT AAT
457100 AGA * 7 19/21 AGA AGA AGA AAA AGA AGA AGG
494614 AAT * 10 27/30 AAT AAG AAT AAT AAT AAT AAG AAT AAT GAT
542925 CCA * 7 19/21 CCA TCA CCA CCA CAA CCA CCA
551506 CAT * 7 19/21 CAT CAT CAT CAT CAT CAT CTA
571108 TTA * 7 19/21 TTA TTG TTA TTA TCA TTA TTA
571923 TCC * 7 19/21 TCC TCT TCC TCC ACC TCC TCC
595377 CTG * 8 23/24 CTG CTG CTG CTG CTG CTG CTG CTT
595779 GAG * 12 33/36 GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAA AAT
607048 ACT * 8 22/24 ACT ACT ACT ACT ACA ACG ACT ACT
610386 AGA * 7 19/21 AGA AGA AGA AGA AGA CGC AGA
631613 AAT * 7 20/21 AAT AAT AAT AAT GAT AAT AAT
651878 TCT * 7 19/21 TCT TCT TCT ATT TCT TCT TCT
743339 AGG * 7 19/21 AGG AGG AGG AGG CGG TGG AGG
779656 TCA * 7 20/21 TCA TCA TCA TCA TCA ACA TCA
806280 TTC * 7 19/21 TTC ATC TTC TTC TTC CTC TTC
811297 CTG * 7 19/21 CTG CTT CTG CTG CTG CTG CTT
885004 GGC * 7 19/21 GGC TGC TGC GGC GGC GGC GGC
900043 ATC * 8 22/24 ATC ATT ATC ATC ATC ATC ATC AGC
975476 GTG * 7 19/21 GTG GTG GTG GTG GTG ATT GTG
975967 TCT * 7 19/21 TCT TCT TCT TTT TCT TCT TGT
976061 CTT * 7 19/21 CTT TTT CTT TTT CTT CTT CTT
976136 CTT * 8 22/24 CTT CTT CGA CTT CTT CTT CTT CTT
976286 CAC * 7 19/21 CAC CAC CAC CAC CAC CAC TTC
1107793 CGG * 7 21/21 CGG CGG CGG CGG CGG CGG CGG
1427220 AGA * 8 22/24 AGA AGA AGA AGA AGA AGA AGA ACT
1438634 ATG * 7 19/21 ATG ATG ATG ATG ATG ATG GTC
1452755 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CAA
1453916 CTT * 8 22/24 CTT CTT CTT CTT CTC CAT CTT CTT
1463998 CAT * 7 19/21 CAT CAT CAT CAT CAT CAT CGA
1467474 TCA * 10 27/30 TCA TCA TCA TCA TCA TCT CCA TCA TCA TCG
1467553 GTC * 7 20/21 GTC GTC GTC ATC GTC GTC GTC
1467596 CGG * 9 25/27 CGG CTG CGG CGG CGG CGG CGG CGG CGT
1568030 TGG * 8 23/24 TGG TGG TGG TGG TGG TGG TGG TGT
1635151 TGG * 8 22/24 TGG TGG TGG TGG TGG TGG TGG AAG
1724809 TCC * 8 23/24 TCC TCC TCC TCC TCC TCC TAC TCC
1733912 CAG * 7 20/21 CAG CAC CAG CAG CAG CAG CAG
1734578 CAT * 7 19/21 CAT CAT CAT CTT CAT CAT CTT
1780344 GGC * 8 22/24 GGC GGC TGC GGC GGC GGC GGC GGT
1830274 ACA * 8 23/24 ACA ACA ACA ACA ACA ACA ACA ACC
2041607 CCA * 7 19/21 CCA CCA TCA CCA CCA CCA CCG
2059500 GGC * 7 19/21 GGC GGC AGC GGT GGC GGC GGC
2063805 TCA * 11 30/33 TCA TCA TAA TTA TCA TCA TCA TCA TCA TCG TCA
2066776 CTT * 7 20/21 CTT CTT CTT CTT CTT CTT CTC
2071900 CTT * 8 23/24 CTT CTT CTT CTT CTT CTT CTT ATT
2251565 TCA * 7 19/21 TCA TCG TCC TCA TCA TCA TCA
2366852 GGT * 7 19/21 GGT GGT GGA CGT GGT GGT GGT
2435333 GAT * 7 20/21 GAT AAT GAT GAT GAT GAT GAT
2447852 TGG * 8 22/24 TGG TGG TGG TTG TAG TGG TGG TGG
2607373 TGG * 7 19/21 TGG TGG TGG TGG TGG TAG AGG
2620889 AGG * 8 22/24 AGG AGG AGG AGG AGG AGG AGA AGC
2632033 AAT * 7 19/21 AAT AAT ATT AAT AAT GAT AAT
2767580 GAA * 7 19/21 GAA GGA GAA GAC GAA GAA GAA
2778810 AGA * 7 19/21 AGA AGA AGA AGA AGA AAA AAA
2780440 GAA * 7 19/21 GAA GAA GAA GAA GAA GAT GGA
2829633 ATA * 8 23/24 ATA ATA ATA ATA ATA ATA ATA ATT
2836473 CAC * 7 19/21 CAC CAC CAC CAC CTC CTC CAC
2836658 CCA * 7 19/21 CCA CCA CCA CCA CCA CCA AGA
3071450 CCA * 7 19/21 CCA CCA CCA CCA CCA CCA CTT
3071695 GCA * 7 19/21 GCA TCA TCA GCA GCA GCA GCA
3076091 CCA * 7 19/21 CCA GCT CCA CCA CCA CCA CCA
3080217 CAG * 7 19/21 CAG CAG CAG CAT CAG CAT CAG
3086436 TCT * 7 19/21 TCT TCC TCT TCT TCT TCT TCA
3110939 CCA * 9 25/27 CCA CCA CCG CCA CCA CCG CCA CCA CCA
3112928 GTG * 9 25/27 GTG GTG GTG GCG GTG GTG GCG GTG GTG
3191992 TCT * 7 19/21 TCT TCT TCT TCT TCC TCG TCT
3200739 GCT * 7 20/21 GCT GCT GCT GCT GCA GCT GCT
3203788 GCA * 10 28/30 GCA GCA GCA GCC CCA GCA GCA GCA GCA GCA
3265725 TGG * 9 25/27 TGG TGG TGG TGG TGG TGG GGG TGG TGC
3272517 TTG * 7 19/21 TTG TTG TGG TTG TTG TGG TTG
3414796 AGA * 7 19/21 AGA AGA GGA AGA AGA CGA AGA
3416574 AGC * 7 19/21 AGC AGC AAC AGC AGC AGC TGC
3454437 GGA * 7 19/21 GGA GGA GTA GGA GGA GTA GGA
3520459 ACA * 8 22/24 ACA ACA ACA ACA ACA ACA ACA GCT
3523826 TAT * 7 19/21 TAT TAT TAT TAT TAT TAT TGA
3542502 TGT * 7 19/21 TGT TGT TGC TGC TGT TGT TGT
3542705 CCA * 7 19/21 CCA CCA CCA CCA CCA CCT CCT
3617970 GGT * 7 19/21 GGT GGT GCT GGT GGT GCT GGT
3719657 GGA * 7 19/21 GGA GGA GGA GGT GGA GGT GGA
3719896 CGG * 11 30/33 CGG TGG CGG CGG CGG CGG CGG CGG TGG AGG CGG
3754855 ACA * 7 19/21 ACA ACA ATA ACA ACA ACA ATA
3803302 AGA * 7 19/21 AGA AGA AGA AGA AGA AGG AAA
3856874 GAA * 8 22/24 GAA AAA GAA GAA AAA GAA GAA GAA
3873758 TTC * 7 20/21 TTC TTC TTC TTC CTC TTC TTC
3892503 AAG * 7 19/21 AAG AAA AAG AAG AAA AAG AAG
3903362 ATA * 7 19/21 ATA ATA ATA ATA ATA ATT ATT
3903383 ATT * 10 28/30 ATT ATT ATT ATT ATT ATT ATT ATT ATG TTT
3955813 AAG * 8 22/24 AAG AAG AAG AAA AAG AAG AAT AAG
3993869 TGG * 7 21/21 TGG TGG TGG TGG TGG TGG TGG
4003432 AAG * 7 20/21 AAG AAG AAA AAG AAG AAG AAG
4044170 CCA * 7 19/21 CCA CCA CCA CCA CCT CCG CCA
4054709 TTC * 7 19/21 TTC TTC TTC TTC TTC TTC TGT
4195279 GAA * 7 19/21 GAA GAA GAA GAA GAA GAA TGA
4211718 TTC * 7 19/21 TTC TTC TGT TTC TTC TTC TTC
4247182 TAT * 7 19/21 TAT TTC TAT TAT TAT TAT TAT
4341399 GGT * 8 22/24 GGT GTT GGT GGT GTT GGT GGT GGT
4365673 TAC * 7 19/21 TAC TAC TAC TAC TAC TAC TTA
4438171 TGT * 7 19/21 TGT GGT GGT TGT TGT TGT TGT
4498321 AAG * 7 19/21 AAG GTG AAG AAG AAG AAG AAG
4532024 AAG * 7 19/21 AAG AAG AAG AAG AAA AAG CAG
4662580 AGA * 11 30/33 AGA AGC AGA AGA AGA AGC AGA AGA AGA AGA AGC
4669124 TTC * 8 23/24 TTC TTC TTC TTC TTC TTA TTC TTC
4690409 ACC * 7 19/21 ACC AAC ACC ACC ACC ACA ACC
4700218 TGT * 7 21/21 TGT TGT TGT TGT TGT TGT TGT
4710424 GTT * 7 19/21 GTT GTT GTT GTA GTT GTT GTA
4719101 ATA * 7 19/21 ATA ATA CTA ACA ATA ATA ATA
4784596 AGA * 7 19/21 AGA AGA AGA AGA AGT AGA AAA
4793305 CCA * 7 19/21 CCA CCA CCA CCA CCT CCT CCA
4966022 AGA * 7 19/21 AGA AGA AGA AAA AGA AGA ATA
5000703 TCA * 7 19/21 TCA TCC TCA TCC TCA TCA TCA
5152893 GAA * 7 19/21 GAA GAA GAA GAA GAA AAT GAA
5175717 TTC * 7 19/21 TTC TTC TTC TTC TTC TTC TAT
5363064 CTT * 7 19/21 CTT CTT CTT CCT CTT CTT TTT
5463117 TGG * 9 25/27 TGG TGG TGG TGG TGG ACG TGG TGG TGG
5463156 TGG * 7 19/21 TGG TGG TGG TGG GCG TGG TGG
5473477 ACT * 8 24/24 ACT ACT ACT ACT ACT ACT ACT ACT
5507553 CCT * 9 25/27 CCT CCT CCT CCT CGT CCT CCT CCT CCG
5508904 TAT * 7 19/21 TAT TAT TAT TAT TAT TAT ATT
5514274 TCA * 8 22/24 TCA TCA TCA TCG TCG TCA TCA TCA
5572851 CTT * 7 19/21 CTT ATG CTT CTT CTT CTT CTT
5582737 GCA * 7 19/21 GCA GCA GCA GCA GGA GCA GCT
5686971 GGT * 8 22/24 GGT GGT GGT GGA GGT GGT GGT GGA
5698557 ATG * 8 22/24 ATG ATA ATG ATG ATG ATG ATG GTG
5700048 TGG * 7 19/21 TGG AGG TGG AGG TGG TGG TGG
5765284 TTC * 7 19/21 TTC TTC TTA TTC TTC TTT TTC
5775159 AGA * 7 20/21 AGA AGA AGA AGG AGA AGA AGA
5775188 CTT * 7 19/21 CTT CTT CTT CTT CAT CTT CTC
5775279 CTT * 7 19/21 CTT CAT TTT CTT CTT CTT CTT
5787225 AGA * 7 19/21 AGA AAA AGA ATA AGA AGA AGA
5854010 ACA * 10 27/30 ACA GCA ACA ACA ACA ACA TCA ACA ACA TCA
5876841 ATT * 7 19/21 ATT GTT ATT ATT ATT ATT GTT
5900592 GAA * 7 19/21 GAA GAA GCA GAA GGA GAA GAA
5903662 AGA * 7 19/21 AGA AAA AAA AGA AGA AGA AGA
5939738 CTT * 7 19/21 CTT CTT CTT CTT CTT CTT CAC
5939977 TCT * 7 19/21 TCT TCT TCT ACT TCG TCT TCT
5940055 TCT * 7 19/21 TCT TCT TCT TCG TCG TCT TCT
5946451 CTA * 7 19/21 CTA CTA CTA CTA GTA ATA CTA
5946578 AAG * 7 20/21 AAG AAA AAG AAG AAG AAG AAG
5946809 CTG * 7 20/21 CTG CTG CTG CTG CTG CTG CAG
5962592 CTC * 7 19/21 CTC CAC CTC CTC CTC CTC CTT
5971043 CTC * 7 19/21 CTC CAC CTC CTC CTC CTC CTT
6020652 ATC * 8 22/24 ATC ATC ATC ATC ATC ATG ATC AAC
6068699 CTT * 7 19/21 CTT CTT CTT CTT TTT GTT CTT
6075628 CTT * 7 19/21 CTT CTT CCT CTT CTT CTT CTG
6085843 CGA * 7 19/21 CGA CGA AGA CGA CGA CGG CGA
6087748 CCA * 8 22/24 CCA TCA CCA CCA CCA CCA TCA CCA
6130787 CTT * 7 19/21 CTT CTT CTT TTT CTT CTT TTT
6181410 GAA * 7 19/21 GAA GAT GAA GAA GAC GAA GAA
6181550 AGA * 9 25/27 AGA AGA AGA AGA TGA AGG AGA AGA AGA
6196104 AAG * 7 19/21 AAG AAG AAG AAG AAG AAG CTG
6232368 AAG * 7 19/21 AAG AAG AAG AAG AAA AAA AAG
6273001 GAT * 7 19/21 GAT GAT CCT GAT GAT GAT GAT
6274804 ACA * 7 19/21 ACA ACA ACA TCA ACA ACA GCA
6274966 ACA * 7 19/21 ACA ACA ATC ACA ACA ACA ACA
6277831 TGA * 8 22/24 TGA TGA TGA TGT TGA TGA TGA TGT
6316640 TTC * 8 22/24 TTC TTC TTC CTC TTC GTC TTC TTC
6367941 GAA * 7 20/21 GAA GAA TAA GAA GAA GAA GAA
6370803 TGG * 7 19/21 TGG TGG TGG TGG TGG CAG TGG
6383007 AAG * 8 22/24 AAG AAG AAG TAG TAG AAG AAG AAG
6386588 CAT * 7 19/21 CAT CAT CAT CAT CAA CAT CGT
6519937 CTT * 7 19/21 CTT CAT CTT CTT CTT CTT CGT
6523424 GAT * 7 19/21 GAT GAA GAT GAT GAA GAT GAT
6527704 TCA * 8 22/24 TCA TCT TCA TCG TCA TCA TCA TCA
6528215 GGT * 7 19/21 GGT GGT GGA GGA GGT GGT GGT
6540471 TTG * 7 19/21 TTG TTG TTG GTA TTG TTG TTG
6549806 GAA * 7 19/21 GAA GAA GAA GAA GAT GAA GAG
6568267 AGG * 8 24/24 AGG AGG AGG AGG AGG AGG AGG AGG
6569971 CTG * 7 20/21 CTG CTG CTG CTG ATG CTG CTG
6570717 AGA * 7 19/21 AGA TCA AGA AGA AGA AGA AGA
6652932 GTA * 35 96/105 GTA GTA GTA GTA GTA GTA GTA GTA GTA GTA GTA GTA GTA GTA GTA GTA GTA GTA GTA GTA GTA GTA GTA GTA GTA GTA GTA GTA GTA GTA GAA GTC TTT TCA AAT
6753042 GCA * 8 22/24 GCA GCT GCA GCG GCA GCA GCA GCA
6757186 ACA * 7 19/21 ACA ACC ACA ACA ACT ACA ACA
6838832 GAA * 7 19/21 GAA AAA GAA GAA GAA GAG GAA
6925693 GTA * 7 19/21 GTA GTA GAA GTA ATA GTA GTA
6926976 ATC * 7 20/21 ATC ATC ATC ATC ATC ATC AAC
7044434 ATA * 7 19/21 ATA ATA ATT ATA ATT ATA ATA
7094092 CGT * 7 19/21 CGT CGT CGT TGT CGT CGT TGT
7095352 AGA * 7 19/21 AGA AGA AAA AGA AGA AGA AGG
7164362 AAG * 7 19/21 AAG AAA AAG AAG AAA AAG AAG
7192993 AAG * 7 19/21 AAG AAG AGC AAG AAG AAG AAG
7197801 CAA * 8 22/24 CAA CAA CAA CAG CAA CAA CAA CAG
7239180 ATA * 8 23/24 ATA ATA ATA ATA ATA ACA ATA ATA
7300637 TTG * 7 19/21 TTG TTG TTG TTG TGG TTT TTG
7344589 TTG * 7 19/21 TTG TTG TTG TTG TGG TTT TTG
7432846 CTT * 7 19/21 CTT CTT CTT CTT CTA CTA CTT
7463646 CTT * 7 19/21 CTT CTT CTT CTT CTA CTA CTT
7502950 TCA * 8 22/24 TCA TCA TCA TCA TCA TCA ACA CCA
7550820 CTT * 8 22/24 CTT CTT CTT CTT CTT CTT CTT CGA
7583083 TGG * 7 20/21 TGG TGG TGG TGG AGG TGG TGG
7892206 AGA * 7 19/21 AGA TGG AGA AGA AGA AGA AGA
7918792 GTT * 7 19/21 GTT TTT GTT GTT GTT TTT GTT
8053941 ATT * 7 19/21 ATT ATT ATT ATT ATT ATA ATA
8094584 AAT * 7 19/21 AAT AAT AAT AAG AAT AAT ACT
8168257 TGT * 7 19/21 TGT TGT TGC TGT TGT TGT TGA
8168561 TTG * 7 19/21 TTG TTG TTG TTG ATG TTG TGG
8289218 TCA * 7 19/21 TCA TCA TCA TCA GCA ACA TCA
8319058 AAG * 7 19/21 AAG AAG AAG AAG AAA AAG GAG
8507489 TCT * 7 20/21 TCT TCT TCT TCT TTT TCT TCT
8576803 TGA * 7 19/21 TGA TGA TGA TGA TGA TGT TGG
8592416 CAG * 7 20/21 CAG CTG CAG CAG CAG CAG CAG
8758132 CAA * 7 19/21 CAA CAG CAA CAA CAA CAG CAA
8762054 CAT * 7 19/21 CAT CAT CTT CAT AAT CAT CAT
8792528 CTT * 7 20/21 CTT CTT CTT CTT CTT CCT CTT
8847549 TCT * 7 19/21 TCT TTT TCT TCT TCT TCT TTT
8876191 CTT * 12 33/36 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CAA CTA
8877408 CAT * 7 19/21 CAT CAT CAT CAT CAT CAT GAA
9025760 TTA * 7 19/21 TTA TTA GTA TTA TTA GTA TTA
9076497 AAG * 7 19/21 AAG AAG AAG AAG AGG AAG ACG
9085637 AGG * 7 19/21 AGG AGG CGG AGG AGG AGG AGT
9110006 CCA * 8 22/24 CCA CCA CCT CCA CCA CCT CCA CCA
9110051 CCA * 8 22/24 CCA CCT CCA CCA CCA CCA CCA TCA
9118168 TGA * 7 19/21 TGA TGA TGA TGA TGA CTA TGA
9241523 GGT * 7 19/21 GGT GGT AGT GGT GGT GGT GGA
9266136 TCC * 8 22/24 TCC TCC TCT TCC TCC TCT TCC TCC
9549099 AGA * 7 19/21 AGA AGA GGA AGA AGA AGA GGA
9598312 GTG * 7 19/21 GTG GTG GTG GTG CTG GTG GAG
9693310 GAA * 8 23/24 GAA GAA GAA GAA GAA GAG GAA GAA
9773918 TGA * 7 20/21 TGA TGA TGA TGA TGA TGA TGG
9851689 AGG * 7 19/21 AGG AGG AGG AGA AGG AGA AGG
9887232 GAT * 7 20/21 GAT GAT GAG GAT GAT GAT GAT
9945111 CGA * 7 19/21 CGA CGA CGA CGA TGA TGA CGA
9946292 ACA * 8 22/24 ACA ACA GCA ACA ACA ACA GCA ACA
9963138 AAG * 12 33/36 AAG AAG AAG AAG CTG AAG AAG AAG AAG AAG AAG AAT
10000687 CTT * 8 22/24 CTT CTC CTA CTT CTT CTT CTT CTT
10002731 GCA * 7 20/21 GCA GCA GTA GCA GCA GCA GCA
10002796 TCG * 7 19/21 TCG TCG TCG TCG TCG TCA TCT
10003829 CAG * 8 24/24 CAG CAG CAG CAG CAG CAG CAG CAG
10035657 TTC * 7 19/21 TTC TTC TTC CTC TTC ATC TTC
10097198 GCT * 7 19/21 GCT GCT ACT GCT GCT ACT GCT
10104494 GTT * 8 22/24 GTT GTT GTG GTT GTT GTT GTT GAT
10128042 TCT * 7 19/21 TCT TCT TCT TAT TCT TAT TCT
10128149 TCT * 7 19/21 TCT ACT TCT TCT TCT TCT TCG
10129104 TCA * 7 19/21 TCA TCA TCA TCA TCA GCA GCA
10165949 AAG * 8 22/24 AAG AAA AAA AAG AAG AAG AAG AAG
10192484 AGA * 11 30/33 AGA AGA AGA AGA CGA AGA AGA AGA TGA AGA TGA
10198341 CAT * 7 20/21 CAT CAT CAT CAT CAT CAT CAC
10207358 ATT * 8 23/24 ATT ATT ATT ATT ATT ATT ATT ATG
10214627 GAA * 8 22/24 GAA GAA GAA GAT GAA GAA GAA AAA
10220457 TAT * 8 22/24 TAT TAG TAT TAG TAT TAT TAT TAT
10236786 TGT * 7 19/21 TGT TGT TGT TGC TGC TGT TGT
10283118 AGA * 8 22/24 AGA AAA AGA AGA AGC AGA AGA AGA
10283232 AAG * 8 22/24 AAG GCG AAG AAG AAG AAG AAG AAG
10397768 CAC * 7 19/21 CAC CGC CAC CAC CAC CAG CAC
10414343 TTC * 8 23/24 TTC TTC TTC TTC TGC TTC TTC TTC
10456032 TTC * 7 19/21 TTC TTC TTC ATT TTC TTC TTC
10456676 CGA * 8 22/24 CGA CGA CGA AGA CGA AGA CGA CGA
10490427 GCT * 7 20/21 GCT GAT GCT GCT GCT GCT GCT
10540256 TTC * 7 19/21 TTC TTT TTC TTC TTC TTC GTC
10636375 TTC * 7 19/21 TTC TTT TTC TTC TTC TTC GTC
10681548 AAG * 8 22/24 AAG AAG AAG AAG GAG AAG AAG ATG
10689780 AAG * 8 22/24 AAG AAG AAG AAG GAG AAG AAG ATG
10832229 AAT * 7 19/21 AAT AAT TAT AAT TAT AAT AAT
10871138 AAG * 8 22/24 AAG AAG AAG AAG GAG AAG AAG ATG
10879370 AAG * 8 22/24 AAG AAG AAG AAG GAG AAG AAG ATG
10986070 AAT * 7 19/21 AAT AAT TAT AAT TAT AAT AAT
11010741 AAT * 8 22/24 AAT AAG AAC AAT AAT AAT AAT AAT
11042475 TTC * 7 19/21 TTC TTC GTC TTT TTC TTC TTC
11042575 CAT * 7 19/21 CAT CAT CAT CAT CAT CTT CGT
11094841 ACT * 7 20/21 ACT ACT ACT ACT ACT ACT ACG
11145951 AGA * 7 20/21 AGA AGA AGA AGA AGA AGA AGG
11220915 AGA * 7 20/21 AGA AAA AGA AGA AGA AGA AGA
11242006 CTT * 7 19/21 CTT CTT CTT CTG CTT CTG CTT
11256456 TGC * 7 19/21 TGC TGC TGC TGC TGC TAC AGC
11343903 ACA * 8 22/24 ACA ACA ACA ATA ACA ACA ACA ATA
11451705 CTG * 8 22/24 CTG CTG CTG CTG CTG CTG CAG CTC
11460861 GGT * 7 19/21 GGT GGT GGT TGT GAT GGT GGT
11461150 GGT * 7 19/21 GGT GGT GGT GGT GCT GTT GGT
11473537 TAA * 8 22/24 TAA TAA TAA TAA TAA CAT TAA TAA
11481752 CTT * 7 20/21 CTT CTT CTT CTT CTT TTT CTT
11496837 CTT * 7 19/21 CTT CTT CTT CTT CTT TTC CTT
11658211 TCC * 7 19/21 TCC TCC TCC TCC TCC TTC TCG
11661826 TCT * 7 19/21 TCT ACT GCT TCT TCT TCT TCT
11661894 TCT * 7 19/21 TCT TTT TCT TCT TCT CCT TCT
11661979 GAA * 9 25/27 GAA GAA TAA GAA GAA GAA GAA GAA GCA
11670832 TTC * 7 20/21 TTC GTC TTC TTC TTC TTC TTC
11671978 CTT * 7 19/21 CTT CAG CTT CTT CTT CTT CTT
11676015 CGA * 7 19/21 CGA CGA CGA CGA CAA CGA CGC
11701018 TCG * 7 20/21 TCG TCG TCG TCG TCG CCG TCG
11701896 TTA * 7 19/21 TTA TTA TAA TTA TTA ATA TTA
11771916 TCA * 11 30/33 TCA TCA TCA TCA TCA TCA TCA TCA TCA GCA TTG
11869568 CAA * 11 30/33 CAA CAG CAA CAA CAA CAA CAA CAA CAA CAA GGA
11869705 ACA * 7 19/21 ACA ACA ACA ACA GCA GCA ACA
11869826 CAA * 7 20/21 CAA CAA CAA CAA CAA CAG CAA
11877702 AGA * 7 20/21 AGA TGA AGA AGA AGA AGA AGA
11974380 GAA * 7 19/21 GAA AAA GAA GAA AAA GAA GAA
12025753 AAG * 7 20/21 AAG GAG AAG AAG AAG AAG AAG
12039337 CTT * 7 19/21 CTT CTT CTT CTT CTT CTT TCT
12039650 GAA * 7 19/21 GAA AAA GAA GAA GAA GAA CAA
12122070 GAA * 7 19/21 GAA AAA GAA GAA AAA GAA GAA
12173427 AAG * 7 20/21 AAG GAG AAG AAG AAG AAG AAG
12187009 CTT * 7 19/21 CTT CTT CTT CTT CTT CTT TCT
12187322 GAA * 7 19/21 GAA AAA GAA GAA GAA GAA CAA
12322720 TGT * 7 19/21 TGT CGT TGT TGT TGT TGT TGC
12358542 TGG * 7 20/21 TGG TGG TGG TGG TGG AGG TGG
12371954 ATA * 8 22/24 ATA ATA ATA AAA ATA ATA ATA GTA
12414712 CTT * 7 19/21 CTT CTT CTT CTG CTT CTT CTC
12491402 CTG * 7 19/21 CTG ATG TTG CTG CTG CTG CTG
12499278 GAA * 8 22/24 GAA GAG GAA GAA GAA GAA GCA GAA
12568815 TGT * 7 19/21 TGT CGT TGT TGT TGT TGT TGC
12604631 TGG * 7 20/21 TGG TGG TGG TGG TGG AGG TGG
12618041 ATA * 8 22/24 ATA ATA ATA AAA ATA ATA ATA GTA
12660793 CTT * 7 19/21 CTT CTT CTT CTG CTT CTT CTC
12733490 AAC * 7 19/21 AAC AAC AAC AAC AAA AAA AAC
12798785 CTA * 9 26/27 CTA ATA CTA CTA CTA CTA CTA CTA CTA
12807002 AAG * 8 22/24 AAG AAG AAG AAG AAG AAG ATG AGG
12810602 TTG * 8 22/24 TTG TTG TTG TTG TTG GTG GTG TTG
12819631 AAT * 8 23/24 AAT AAT AAT AAT AAT AAA AAT AAT
13050872 TCT * 7 20/21 TCT GCT TCT TCT TCT TCT TCT
13134889 CTA * 8 22/24 CTA CTA CTA CTA CTC CTA CAA CTA
13175098 CGC * 7 20/21 CGC CGC CGC CGC CGC CGC TGC
13183850 TCA * 11 30/33 TCA ACA TCA TCA TCA TCA TCA TCA TCA TCA AAA
13197291 TAA * 8 22/24 TAA TAA TAA TAA TAA TAA TAT TGA
13198365 ATT * 7 19/21 ATT ATT AAT ATT ATT AGT ATT
13210268 CAT * 7 19/21 CAT CAT TAT CAT TAT CAT CAT
13272073 TAT * 8 22/24 TAT TAT TAT AAT TAA TAT TAT TAT
13429009 CTT * 8 22/24 CTT CTT CTT CTT CTT CTC CTT TTT
13686541 ATA * 8 22/24 ATA ATA ATA ATA ATA ATA ATG AGA
13699700 AAC * 8 22/24 AAC AAC AAA AAC AAC AAT AAC AAC
13798284 TGA * 8 22/24 TGA TGA TGA TGA TGA TAA TGA TGT
13957919 GTG * 8 22/24 GTG GTG GTT GTG GTG GTG GTG GAG
13973464 ACA * 7 19/21 ACA ACA ACA ACA ACA ATA ACC
13975681 CAA * 7 19/21 CAA CAA CAG CAA CAA CAG CAA
13976169 GCT * 7 19/21 GCT GCT GCT GCT TCT GCT TCT
13986190 AAT * 8 23/24 AAT AAT AAT AAT AAT TAT AAT AAT
14226707 GAA * 8 22/24 GAA GAG GAG GAA GAA GAA GAA GAA
14229402 TGA * 7 19/21 TGA TGA TGA AGA TGA AGA TGA
14284024 TTA * 7 19/21 TTA TTA TTA TTA TTA TTT TTT
14306488 CTT * 16 44/48 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTG TAT CCT
14352355 CTT * 19 53/57 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTG TAT CCT
14382067 TTA * 7 19/21 TTA TTA TTA TTA TTA TTA CTT
14500189 GAT * 7 19/21 GAT GAG GAT GAG GAT GAT GAT
14617378 AAT * 8 22/24 AAT AAT AGT AAT AAT AAT ATT AAT
14733977 TCA * 8 22/24 TCA TCA TCA TCA TCA TCA TCT TCT
15122538 ATT * 7 19/21 ATT ATT ATT GTT TTT ATT ATT
15505536 CAG * 7 20/21 CAG CAG CAG CAG CAG CAG CTG
15750640 ACA * 7 19/21 ACA ACC ACA ACA CCA ACA ACA
15750987 AAC * 7 19/21 AAC TAC AAC AAC AAC ACC AAC
15751716 ACA * 7 19/21 ACA CCA ACA ACA ACA ACA ACG
15818769 TAA * 7 19/21 TAA TAA TAA TAA TAA TTA TAT
-----------------------------------------------------------------------------------------
Total sequence length......................... 15887371
Minimum Tri-Nucleotide repeat units........... 7
Total number of repeats detected.............. 346
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 12 11 1 0 0 0 0 0 0 0 0 0 0
AAG 23 22 1 0 0 0 0 0 0 0 0 0 0
AAC 3 3 0 0 0 0 0 0 0 0 0 0 0
ATA 8 8 0 0 0 0 0 0 0 0 0 0 0
ATT 6 5 1 0 0 0 0 0 0 0 0 0 0
ATG 2 2 0 0 0 0 0 0 0 0 0 0 0
ATC 3 3 0 0 0 0 0 0 0 0 0 0 0
AGA 22 20 2 0 0 0 0 0 0 0 0 0 0
AGG 5 5 0 0 0 0 0 0 0 0 0 0 0
AGC 1 1 0 0 0 0 0 0 0 0 0 0 0
ACA 13 12 1 0 0 0 0 0 0 0 0 0 0
ACT 3 3 0 0 0 0 0 0 0 0 0 0 0
ACC 1 1 0 0 0 0 0 0 0 0 0 0 0
TAA 4 3 1 0 0 0 0 0 0 0 0 0 0
TAT 5 5 0 0 0 0 0 0 0 0 0 0 0
TAC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 6 6 0 0 0 0 0 0 0 0 0 0 0
TTG 6 6 0 0 0 0 0 0 0 0 0 0 0
TTC 15 15 0 0 0 0 0 0 0 0 0 0 0
TGA 6 6 0 0 0 0 0 0 0 0 0 0 0
TGT 7 7 0 0 0 0 0 0 0 0 0 0 0
TGG 13 13 0 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 13 9 4 0 0 0 0 0 0 0 0 0 0
TCT 14 14 0 0 0 0 0 0 0 0 0 0 0
TCG 2 2 0 0 0 0 0 0 0 0 0 0 0
TCC 4 4 0 0 0 0 0 0 0 0 0 0 0
GAA 19 19 0 0 0 0 0 0 0 0 0 0 0
GAT 5 5 0 0 0 0 0 0 0 0 0 0 0
GAG 1 0 1 0 0 0 0 0 0 0 0 0 0
GTA 2 1 0 0 0 0 0 0 0 0 1 0 0
GTT 3 3 0 0 0 0 0 0 0 0 0 0 0
GTG 4 4 0 0 0 0 0 0 0 0 0 0 0
GTC 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 2 2 0 0 0 0 0 0 0 0 0 0 0
GGT 8 8 0 0 0 0 0 0 0 0 0 0 0
GGC 3 3 0 0 0 0 0 0 0 0 0 0 0
GCA 5 4 1 0 0 0 0 0 0 0 0 0 0
GCT 4 4 0 0 0 0 0 0 0 0 0 0 0
CAA 5 4 1 0 0 0 0 0 0 0 0 0 0
CAT 9 9 0 0 0 0 0 0 0 0 0 0 0
CAG 6 6 0 0 0 0 0 0 0 0 0 0 0
CAC 3 3 0 0 0 0 0 0 0 0 0 0 0
CTA 3 3 0 0 0 0 0 0 0 0 0 0 0
CTT 31 28 1 0 1 1 0 0 0 0 0 0 0
CTG 6 6 0 0 0 0 0 0 0 0 0 0 0
CTC 3 3 0 0 0 0 0 0 0 0 0 0 0
CGA 4 4 0 0 0 0 0 0 0 0 0 0 0
CGT 1 1 0 0 0 0 0 0 0 0 0 0 0
CGG 3 2 1 0 0 0 0 0 0 0 0 0 0
CGC 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 13 13 0 0 0 0 0 0 0 0 0 0 0
CCT 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
12 AAT + 8 ATA + 4 TAA + 6 ATT + 6 TTA + 5 TAT = 41
23 AAG + 22 AGA + 19 GAA + 31 CTT + 15 TTC + 14 TCT = 124
3 AAC + 13 ACA + 5 CAA + 3 GTT + 6 TTG + 7 TGT = 37
2 ATG + 6 TGA + 5 GAT + 9 CAT + 3 ATC + 13 TCA = 38
0 AGT + 2 GTA + 0 TAG + 3 ACT + 3 CTA + 1 TAC = 9
5 AGG + 2 GGA + 1 GAG + 2 CCT + 3 CTC + 4 TCC = 17
1 AGC + 5 GCA + 6 CAG + 4 GCT + 6 CTG + 1 TGC = 23
0 ACG + 4 CGA + 0 GAC + 1 CGT + 1 GTC + 2 TCG = 8
1 ACC + 13 CCA + 3 CAC + 8 GGT + 4 GTG + 13 TGG = 42
3 GGC + 0 GCG + 3 CGG + 0 GCC + 0 CCG + 1 CGC = 7
-----------------------------------------------------------------------------------------
-----------------------------------------------------------------------------------------
Tri-nucleotide repeats in C. elegans Chromosome-IV complete sequence
Minimum tri-nucleotide repeating units = 7 (allowing 10% mismatch)
Total 1 sequences searched with a total of 15887371 bp length
Total 346 repeats covering 7236 / 7887 base pairs
Length distribution of all tri-nucleotide repeats
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
no. of repeat-units 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 >=40
total repeats 240 78 9 5 8 3 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Length distribution of all tri-nucleotide repeats
No. of repeat units> 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
total repeats--> 327 16 0 1 1 0 0 0 0 1 0 0
AAT 11 1 0 0 0 0 0 0 0 0 0 0
AAG 22 1 0 0 0 0 0 0 0 0 0 0
AAC 3 0 0 0 0 0 0 0 0 0 0 0
ATA 8 0 0 0 0 0 0 0 0 0 0 0
ATT 5 1 0 0 0 0 0 0 0 0 0 0
ATG 2 0 0 0 0 0 0 0 0 0 0 0
ATC 3 0 0 0 0 0 0 0 0 0 0 0
AGA 20 2 0 0 0 0 0 0 0 0 0 0
AGG 5 0 0 0 0 0 0 0 0 0 0 0
AGC 1 0 0 0 0 0 0 0 0 0 0 0
ACA 12 1 0 0 0 0 0 0 0 0 0 0
ACT 3 0 0 0 0 0 0 0 0 0 0 0
ACC 1 0 0 0 0 0 0 0 0 0 0 0
TAA 3 1 0 0 0 0 0 0 0 0 0 0
TAT 5 0 0 0 0 0 0 0 0 0 0 0
TAC 1 0 0 0 0 0 0 0 0 0 0 0
TTA 6 0 0 0 0 0 0 0 0 0 0 0
TTG 6 0 0 0 0 0 0 0 0 0 0 0
TTC 15 0 0 0 0 0 0 0 0 0 0 0
TGA 6 0 0 0 0 0 0 0 0 0 0 0
TGT 7 0 0 0 0 0 0 0 0 0 0 0
TGG 13 0 0 0 0 0 0 0 0 0 0 0
TGC 1 0 0 0 0 0 0 0 0 0 0 0
TCA 9 4 0 0 0 0 0 0 0 0 0 0
TCT 14 0 0 0 0 0 0 0 0 0 0 0
TCG 2 0 0 0 0 0 0 0 0 0 0 0
TCC 4 0 0 0 0 0 0 0 0 0 0 0
GAA 19 0 0 0 0 0 0 0 0 0 0 0
GAT 5 0 0 0 0 0 0 0 0 0 0 0
GAG 0 1 0 0 0 0 0 0 0 0 0 0
GTA 1 0 0 0 0 0 0 0 0 1 0 0
GTT 3 0 0 0 0 0 0 0 0 0 0 0
GTG 4 0 0 0 0 0 0 0 0 0 0 0
GTC 1 0 0 0 0 0 0 0 0 0 0 0
GGA 2 0 0 0 0 0 0 0 0 0 0 0
GGT 8 0 0 0 0 0 0 0 0 0 0 0
GGC 3 0 0 0 0 0 0 0 0 0 0 0
GCA 4 1 0 0 0 0 0 0 0 0 0 0
GCT 4 0 0 0 0 0 0 0 0 0 0 0
CAA 4 1 0 0 0 0 0 0 0 0 0 0
CAT 9 0 0 0 0 0 0 0 0 0 0 0
CAG 6 0 0 0 0 0 0 0 0 0 0 0
CAC 3 0 0 0 0 0 0 0 0 0 0 0
CTA 3 0 0 0 0 0 0 0 0 0 0 0
CTT 28 1 0 1 1 0 0 0 0 0 0 0
CTG 6 0 0 0 0 0 0 0 0 0 0 0
CTC 3 0 0 0 0 0 0 0 0 0 0 0
CGA 4 0 0 0 0 0 0 0 0 0 0 0
CGT 1 0 0 0 0 0 0 0 0 0 0 0
CGG 2 1 0 0 0 0 0 0 0 0 0 0
CGC 1 0 0 0 0 0 0 0 0 0 0 0
CCA 13 0 0 0 0 0 0 0 0 0 0 0
CCT 2 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes in all sequences
12 AAT + 8 ATA + 4 TAA + 6 ATT + 6 TTA + 5 TAT = 41
23 AAG + 22 AGA + 19 GAA + 31 CTT + 15 TTC + 14 TCT = 124
3 AAC + 13 ACA + 5 CAA + 3 GTT + 6 TTG + 7 TGT = 37
2 ATG + 6 TGA + 5 GAT + 9 CAT + 3 ATC + 13 TCA = 38
0 AGT + 2 GTA + 0 TAG + 3 ACT + 3 CTA + 1 TAC = 9
5 AGG + 2 GGA + 1 GAG + 2 CCT + 3 CTC + 4 TCC = 17
1 AGC + 5 GCA + 6 CAG + 4 GCT + 6 CTG + 1 TGC = 23
0 ACG + 4 CGA + 0 GAC + 1 CGT + 1 GTC + 2 TCG = 8
1 ACC + 13 CCA + 3 CAC + 8 GGT + 4 GTG + 13 TGG = 42
3 GGC + 0 GCG + 3 CGG + 0 GCC + 0 CCG + 1 CGC = 7
-----------------------------------------------------------------------------------------
Frequency distribution of repeats longer than 40 bp
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 0
0 AAG + 0 AGA + 0 GAA + 2 CTT + 0 TTC + 0 TCT = 2
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 1 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 0
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Sequence-wise distribution of tri-nucleotide repeats
-----------------------------------------------------------------------------------------
Total Repeats-longer Sequence Number
Repeats than 40 bp 1
-------------------------------------------
AAT 12 0 12
AAG 23 0 23
AAC 3 0 3
ATA 8 0 8
ATT 6 0 6
ATG 2 0 2
ATC 3 0 3
AGA 22 0 22
AGG 5 0 5
AGC 1 0 1
ACA 13 0 13
ACT 3 0 3
ACC 1 0 1
TAA 4 0 4
TAT 5 0 5
TAC 1 0 1
TTA 6 0 6
TTG 6 0 6
TTC 15 0 15
TGA 6 0 6
TGT 7 0 7
TGG 13 0 13
TGC 1 0 1
TCA 13 0 13
TCT 14 0 14
TCG 2 0 2
TCC 4 0 4
GAA 19 0 19
GAT 5 0 5
GAG 1 0 1
GTA 2 1 2
GTT 3 0 3
GTG 4 0 4
GTC 1 0 1
GGA 2 0 2
GGT 8 0 8
GGC 3 0 3
GCA 5 0 5
GCT 4 0 4
CAA 5 0 5
CAT 9 0 9
CAG 6 0 6
CAC 3 0 3
CTA 3 0 3
CTT 31 2 31
CTG 6 0 6
CTC 3 0 3
CGA 4 0 4
CGT 1 0 1
CGG 3 0 3
CGC 1 0 1
CCA 13 0 13
CCT 2 0 2
-------------------------------------------
346 3
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© Division of Biochemical Sciences, National Chemical Laboratory, Pune 411008, INDIA