Di-Nucleotide Repeats in Genomic Sequences
Di-Nucleotide Repeats in
C. elegans Chromosome-IV complete sequence
Genomic Sequence:..
lcl|chr_IV
Position Repeat Coverage Repeat
102169 CT * 31 56/62 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT TT TC TT TT TT
166685 CA * 10 18/20 CA AC CA CA CA CA CA CA CA CA
256752 CT * 12 23/24 CT CT CT CT TT CT CT CT CT CT CT CT
322074 TG * 13 24/26 TG TA TG TG TA TG TG TG TG TG TG TG TG
333665 TA * 16 29/32 TA TA TA TA TA TA TA TA TA TA TA TA TA CA GA AA
386218 TA * 12 22/24 TA TA TA TA TA TA TA TG TA TA TA GA
492430 CT * 13 25/26 CT CT CT CT CT CT CT CT CT CT CT CT CA
548101 TG * 17 32/34 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG CA TG
549688 CA * 10 18/20 CA CA CA CA CA CA CA AA CA TA
636461 CT * 10 18/20 CT CT CT CT CT CT CT AT TT CT
804278 CA * 10 18/20 CA TG CA CA CA CA CA CA CA CA
935825 TC * 11 21/22 TC TC TC TC TC TC TC TC TC TC TG
1130399 CT * 11 20/22 CT CT CT CT CT CT CT CT CT CC CC
1139159 AC * 13 24/26 AC AC AC AC AC AC AC AC AC AC AC AT AT
1139255 TG * 11 21/22 TG TA TG TG TG TG TG TG TG TG TG
1139397 GT * 23 42/46 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT AT GA AC GT
1145153 TG * 10 18/20 TG TG TG TG TG TG TG TG TG GT
1224894 TC * 11 20/22 TC TC TC TC TC TC TC TC TC TG AC
1236694 AT * 10 19/20 AT AT AT AT AT AT AT AT AT AA
1244829 CA * 11 20/22 CA GA CA CA CA CA CA CA CA CA AA
1396480 TC * 10 18/20 TC TT TC TC TC TC TC TC TC TA
1404389 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AC AA AT
1411881 CA * 10 19/20 CA CA CA CA CA CA CA CA CA CT
1422614 TA * 13 24/26 TA AA TA TA TA TA TA TA TA TA TA TA TT
1433965 TC * 10 18/20 TC AC AC TC TC TC TC TC TC TC
1435054 GA * 11 20/22 GA GA GA GA GA GA GA GA GA GG CA
1440065 TG * 25 45/50 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TA TG TG TA TT TG CC
1442286 AT * 10 19/20 AT AT AT AT AT AT AT AT AT AA
1450413 CA * 13 24/26 CA CA CA CA CA CA CA CA TA CA CT CA CA
1454565 TC * 15 27/30 TC TC TC TC TC GC TC TC TC TC TC TC TC TA AC
1462352 TA * 11 20/22 TA TA TA TA TA TA TA TA TA TT AA
1469640 TC * 10 19/20 TC TC AC TC TC TC TC TC TC TC
1469766 TC * 13 24/26 TC TC TC TC CG TC TC TC TC TC TC TC TC
1472307 AG * 13 24/26 AG AA AG AG AG AG AG AG AG AG AG AA AG
1554670 TC * 11 20/22 TC TC TC CT TC TC TC TC TC TC TC
1578760 TG * 10 18/20 TG TG TG TG TG TG TG TG TT GG
1586570 AG * 12 22/24 AG AG AG AG AG AG AG AG AG AG AG CA
1589190 CA * 10 19/20 CA CA CA CA CA CA CA CA CA CC
1589229 TG * 10 18/20 TG TA TT TG TG TG TG TG TG TG
1678899 TA * 10 18/20 TA TA TA TA TA TA TA TA AT TA
1680825 CA * 10 18/20 CA CA CA CA CA CA CA CA CA TC
1722637 TC * 24 44/48 TC TC TT TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TT TT TA
1723404 CT * 11 21/22 CT CA CT CT CT CT CT CT CT CT CT
1794888 TA * 16 30/32 TA TA TA TG TA TA TA TA TA TA TG TA TA TA TA TA
1843271 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AA CT
2060112 AC * 10 18/20 AC AC AC AC AC AC AC AC GC GC
2064128 TC * 10 18/20 TC TC TC TT TC TC TC TC GC TC
2066869 CT * 13 24/26 CT CT CT TG CT CT CT CT CT CT CT CT CT
2070029 CA * 15 27/30 CA CA CG CA CA CA CA CA CA CA CA CA CA CA AT
2071992 AG * 11 20/22 AG AG AG AG AG AA AG AG AG AG GG
2105070 GT * 14 26/28 GT GT GT GT GT GT GT GT GT GT GT AT GT AT
2119564 TA * 10 18/20 TA TA TA TA TA TA TA TA TA AG
2215771 GA * 10 18/20 GA GA GA GA GA GA GA AA GA GT
2289032 AG * 11 21/22 AG AG AG AG AG AG AG AG AG AG TG
2354421 TA * 21 39/42 TA TA TA TA TA TA TA TA TA TA TA TC TA TA TA TC TA TA TA TC TA
2391407 TA * 10 18/20 TA TA TA TA TA TA TA TA TC CA
2404497 CT * 11 21/22 CT CT CT CT CT CT CT CT CT CT CG
2409412 GA * 12 22/24 GA GA GA GA GA GA GA GA GA GA AA CA
2414045 AC * 10 18/20 AC TC AC AC AC AC AC AC TC AC
2484022 AC * 10 18/20 AC AC AC AC AC AC AC AC AC CA
2490877 CA * 16 29/32 CA CA CA CA CA CA CA CA CA CA CA CA CA CA AA GC
2547664 AT * 10 19/20 AT AT AT AT AT AT AT AT AT AA
2585339 CT * 26 47/52 CT CT CT CT CT CT GT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT TG GA
2586476 AC * 10 18/20 AC AC AC AC AC AC AC AC AA AA
2587712 AG * 13 24/26 AG AT AG AG AG AG AG AG AG AG AG AG AT
2625352 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CA TT
2637615 AT * 15 27/30 AT AT AT AT AT AT AT AT AT AT AT AT AT CC AG
2779592 GT * 10 18/20 GT CT AT GT GT GT GT GT GT GT
2856129 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TA GG TG
2865162 TC * 19 35/38 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TG TC TT TT
2869765 TA * 37 68/74 TA GA TT TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TC GG TT
2882249 AT * 12 22/24 AT AC AC AT AT AT AT AT AT AT AT AT
3203458 GA * 37 67/74 GA GA TG GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GC GG AA GA AT
3203958 TG * 11 20/22 TG TG TT TG TG TG TG TG TA TG TG
3211043 TG * 10 18/20 TG TG TG TG TG TG TG TG TA TA
3239441 TC * 11 20/22 TC TC TC TC TC TC TC TC TC CA TC
3241629 TC * 10 18/20 TC TC TC TC TC TC TC TG TC TA
3272791 TA * 12 22/24 TA TA GG TA TA TA TA TA TA TA TA TA
3272825 AT * 10 18/20 AT GT AT AT AT AT AT AT AT AA
3319581 TC * 15 27/30 TC TC TC CC AC TC TC TC TC TC TC TC TC TC TA
3323184 TC * 11 20/22 TC TC TC AC TC TC TC AC TC TC TC
3335152 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG CC
3358698 TC * 11 20/22 TC TC AT TC TC TC TC TC TC TC TC
3368835 TA * 11 20/22 TA TA TT TA TA TA TA TA TA TA TT
3431465 GT * 10 18/20 GT GT GT GT GT GT GT CT GT CT
3436126 GA * 10 18/20 GA GT GA GA GA GT GA GA GA GA
3454363 AG * 13 24/26 AG AC AG AG AG AG AG AG AG AT AG AG AG
3533772 TG * 90 162/180 TG TA TC TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TC CT TT TT TC TT CT TC TA TT TT TT CA
3784023 CT * 10 18/20 CT CT CT CT CT TT CT CT CT CA
3804096 AT * 11 21/22 AT AT AT AT AT AT AT AT AT AT CT
3814692 AC * 11 20/22 AC AC AT AC AC AC AT AC AC AC AC
3826524 TC * 12 22/24 TC TC TC TC AT TC TC TC TC TC TC TC
3834290 TA * 28 52/56 TA TG TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA AG
3871575 TG * 10 19/20 TG TA TG TG TG TG TG TG TG TG
3906600 AT * 15 27/30 AT AT AT AT AT AT AT AT AT AT AT AT TT AT TC
4048576 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TT GG
4061938 TC * 15 27/30 TC TC TA TC TC TA TC TC TC TC TC TC TC TC AC
4077177 TC * 11 20/22 TC TC TC CC TC TC TC TC TC TC TT
4077323 GA * 10 18/20 GA AA GA GA GA GA GG GA GA GA
4248256 AT * 12 22/24 AT CC AT AT AT AT AT AT AT AT AT AT
4249884 TC * 33 60/66 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TT TT TC TC TA AA AC TC TC TC
4250018 TC * 23 42/46 TC TG TT TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TT AC
4251911 AG * 10 18/20 AG AG AG AG AG AA AG AG AG AC
4274873 AC * 10 18/20 AC AC AC AC AC AC AC AC AC TA
4274893 GT * 11 20/22 GT CT GT GT GT GT GT GT GT GT CT
4293141 CA * 10 18/20 CA CA CA CA CA CA AA TA CA CA
4341204 GA * 16 29/32 GA AA GA GA GA GA GA GA GA GA GA GA GA GA TA GG
4344450 GA * 16 29/32 GA GA GA GA GA GA GA GA GA GA GA CA GA GA TA TA
4347912 AG * 12 22/24 AG AG AG AG AG AG AG AG AG AC AG AA
4353030 AG * 10 18/20 AG AA AG AA AG AG AG AG AG AG
4373734 GA * 10 18/20 GA GA GA GA GA GA GA GA GA AC
4373806 CT * 10 18/20 CT CT CT CT CT CT CT CT CT TC
4382073 AT * 47 85/94 AT CT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AG AT GT TT CA AA
4395252 CT * 21 38/42 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT TC TC
4395294 TC * 32 58/64 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TT AG AC TC CA TC
4456944 AT * 10 18/20 AT AT AT AT AT AT AT AT AT GC
4494882 GA * 10 18/20 GA CA CA GA GA GA GA GA GA GA
4545000 TG * 12 22/24 TG TG TG TG TG TG TG TG TG TG TG AA
4545360 AC * 10 18/20 AC AC AC AC AC AC AT AC AA AC
4598254 TA * 43 78/86 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TT TT TG AC AT
4598684 AT * 20 36/40 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA AA GT AC
4601493 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AT TA
4619179 TG * 10 18/20 TG TA TG CG TG TG TG TG TG TG
4657701 GT * 10 18/20 GT GT GT GT GT GT GT GT GC GC
4722926 AT * 10 18/20 AT AT AT AT GT AT AT AT AT TT
4785567 CA * 13 25/26 CA CA CA CA CA CA CA CA CA CA CA CA CC
4940464 CA * 32 59/64 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA GG CA GA AA CA AA CA
4981261 AC * 11 20/22 AC AT AC AC AC AC AC AC AC AC AT
5058944 TC * 13 24/26 TC TC TT TC TC TG TC TC TC TC TC TC TC
5058972 TC * 43 79/86 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC AT GT CA TG
5075725 AT * 10 18/20 AT AT AT AT AT AT AT AT CT TT
5239198 CT * 10 18/20 CT CT CT TT CT CT CT CT CC CT
5243461 TC * 10 18/20 TC AC TC TC TC TC TC TC TC TT
5348085 GA * 10 18/20 GA GA GA GA GA GA GA GA GA AT
5399136 CA * 10 18/20 CA CA CA CA CA CA CA CA TA TA
5550133 TC * 11 20/22 TC TC TC TC TC TT TC TC TC TC TA
5656406 TC * 27 50/54 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC AA CA
5748404 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG GC
5751492 TC * 10 18/20 TC TC TC TC TC TC TC TC TC AA
5790082 GA * 12 22/24 GA GA GA GA GA GA GA GA GA GA GA AG
5860491 TG * 10 18/20 TG TG TG TG TG TG TG TG TT TT
5883962 GA * 10 18/20 GA GA GA GA GA GA GA GA CA GG
5929746 AC * 10 18/20 AC AC AC AC AC AC AC AC AT AA
6003047 AG * 16 29/32 AG AG AG AG AG AG AG AG AG AG AG AG GG AG AA GG
6024251 CA * 11 20/22 CA CA CA CA CA TA CA CA CA TA CA
6058073 CA * 11 20/22 CA CA AA CA CA CA CA CA CA CA AA
6061683 TC * 10 18/20 TC TC TC TC TG TC TC TC TC TT
6206834 AC * 18 33/36 AC AC AC AC AG AC AC AC AC AC AC AC AC AC AC AC AT AT
6249829 TC * 10 18/20 TC TC TC TC TC TC TC TC TC CT
6323832 AG * 10 18/20 AG GG AG AG AG AG AG AG TG AG
6344609 TC * 10 18/20 TC TC TC TC TC TC TC TC CG TC
6357197 GT * 10 18/20 GT AT GT GT GT GA GT GT GT GT
6375233 CA * 16 29/32 CA CA CA CA CA CA CA CA CA CA CA CA CA CA GA AC
6389471 TA * 13 24/26 TA AA GA TA TA TA TA TA TA TA TA TA TA
6414659 AT * 14 26/28 AT AT AT AT AT AT AT AT AT AT AT AT AT TA
6463018 AG * 16 29/32 AG AG AG AA AG AG AG AA AG AG AG AG AG AG AG AC
6570974 TC * 10 19/20 TC TC TC TC TC TC TC TT TC TC
6672452 CT * 10 18/20 CT CT CT CA CT CT CT AT CT CT
6680638 TA * 10 18/20 TA TA TA TA TA TT TA TT TA TA
6769517 AG * 12 22/24 AG AG AG AG AG AG AG TG AG AA AG AG
6848884 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA TA CA AA
6905766 TA * 51 92/102 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TT TA AA GC AA CA AT AA
7052059 AT * 12 22/24 AT AT AC AT AT AT AT AT AT AT AT TT
7238820 CT * 30 54/60 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CA GT CA CT GA CG
7287375 TC * 10 18/20 TC CC TC TC TC TC CC TC TC TC
7487914 TC * 10 19/20 TC TC TC TC TC TC TC TC TC TT
7585551 TC * 10 18/20 TC TC TC TC TC TC TC TC TT TA
7632244 TC * 12 22/24 TC TC TC TC TC TC TC TC TT TG TC TC
7642835 GT * 10 18/20 GT GT GT GT GT AT GT GT GT AT
7648055 AG * 10 18/20 AG AG AG AG AA AG AG GG AG AG
7799408 GT * 10 18/20 GT GG AT GT GT GT GT GT GT GT
7802430 AT * 10 18/20 AT AT AT AT TT AA AT AT AT AT
7807651 TA * 11 20/22 TA TA TA TA TA TA AA TA TA TA TT
7819861 TA * 12 23/24 TA TA TA TA TA TA TA TA TA TA TA CA
7832547 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CA TT
7981749 GA * 10 18/20 GA AA GA GA GA GA GA GA CA GA
8098154 CT * 10 18/20 CT CT CT CA CT CT CT CT CT CA
8165393 AT * 11 20/22 AT AT AT AT AT AT TT AT AT TT AT
8246494 TC * 10 18/20 TC TC TC TA TC TC TC TT TC TC
8310545 AG * 40 72/80 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AA AA CA AC TG AA AT
8323770 AG * 12 22/24 AG AG AC AG AG AG AG AG AG AA AG AG
8328142 TA * 16 29/32 TA TC TA TA TA TA TA TA TA TA TA TA TA TA AT TA
8355395 CT * 10 18/20 CT CT CT CT CT CT CT CC CT AT
8435510 AG * 10 18/20 AG AG AG AG AA AG AA AG AG AG
8624931 TC * 13 25/26 TC TC TC TC TC TC TC TC TC TC TC TC TT
8865391 GA * 10 18/20 GA GA CA GA GA GG GA GA GA GA
8869627 CA * 10 18/20 CA CA CA CG CA CA CT CA CA CA
8869851 AG * 10 18/20 AG AG AG AC AG AG AG AG AG AA
8877447 AG * 10 18/20 AG AG AG AG AG AG AG AG AA AT
9116157 TA * 16 30/32 TA TA CA TA TA TA TA TA TA TA TA TA TA TA TG TA
9194290 GT * 10 18/20 GT GA GT GT AT GT GT GT GT GT
9194366 TC * 11 21/22 TC TC TC TC TC TC TC TC TC TC TT
9215719 TA * 37 68/74 TA TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TG TA TA TT TT TG
9241983 CA * 10 18/20 CA CA CA CA CA CA CA CA TA CT
9273073 TA * 14 26/28 TA TA TA TA TA TA TA TA TA TA TA TA TA GT
9363252 AG * 10 19/20 AG AG AG AG AG AG AG AG AT AG
9639475 AT * 31 57/62 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AG AT AC AT AC TT
9779726 GA * 11 20/22 GA GA GA GA GA GA GA GA GA GA CT
9784059 AG * 13 24/26 AG GA AG AG AG AG AG AG AG AG AG AG AG
9806288 TA * 25 45/50 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TG TT GA TT
9877326 GA * 11 20/22 GA GA GA GA AA GA GA GA GA GA AA
9909494 TC * 16 29/32 TC TC TC TC TG TC TG TC TC TC TC TC TC TC TC TA
10023686 TC * 11 20/22 TC TC TC TC TC TC TC TC TC TC CT
10168727 CT * 12 22/24 CT CT CT TT CT CT CT CT CT CT CT AT
10276259 CT * 12 22/24 CT CC TT CT CT CT CT CT CT CT CT CT
10304270 TC * 17 31/34 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TT CA
10401484 GA * 10 19/20 GA GA AA GA GA GA GA GA GA GA
10536475 CT * 10 18/20 CT AT GT CT CT CT CT CT CT CT
10559737 TA * 10 19/20 TA GA TA TA TA TA TA TA TA TA
10562854 TC * 10 18/20 TC TC TC TC TC TC TC TA CC TC
10632595 CT * 10 18/20 CT AT GT CT CT CT CT CT CT CT
10655854 TA * 10 19/20 TA GA TA TA TA TA TA TA TA TA
10658971 TC * 10 18/20 TC TC TC TC TC TC TC TA CC TC
10681210 TC * 10 18/20 TC AC TC TC TC TC TC TC TC TT
10689442 TC * 10 18/20 TC AC TC TC TC TC TC TC TC TT
10778929 AG * 11 20/22 AG AG AG AG AG AG GG AG TG AG AG
10870800 TC * 10 18/20 TC AC TC TC TC TC TC TC TC TT
10879032 TC * 10 18/20 TC AC TC TC TC TC TC TC TC TT
10953521 CT * 11 20/22 CT CT CA CT CC CT CT CT CT CT CT
11021536 GT * 10 18/20 GT GT GT GT GT GT AT GA GT GT
11030836 CT * 11 20/22 CT CT CT CT CT CT CT CT CT AT AT
11043803 AT * 13 25/26 AT AT AT AT AT AT AT AT AT AT AT AT AA
11058276 AG * 19 35/38 AG AG AG AG AG AG AT AG AG AG AG AG AG AG GG AG AG AG AC
11168462 CT * 17 31/34 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT TT TC
11236824 TC * 13 24/26 TC TC TC TC TC TC TC TT TC TC CC TC TC
11239126 AC * 10 18/20 AC AC AC AC AC AC AC AG AC AT
11254007 TG * 10 18/20 TG TG TG TG TG TG TG TG TG AC
11270160 AG * 21 39/42 AG AC AG AG AG AG AC AG AG AG AG AG AG AG AG AG AG AG AG AG AC
11332281 CT * 10 18/20 CT CT CT CT CT CT CT GT CT TT
11399923 GT * 10 18/20 GT AT GT GT GT GT GT GT GT TT
11438218 AT * 16 29/32 AT AT AT AT AT AT AT AT AT AT AT AT AT AT CA TT
11440022 TA * 12 22/24 TA TA TA TA TA TA TA TA TA TA TG TG
11440046 TG * 10 19/20 TG TG TG TG TG TG TG TG TG TT
11460256 GT * 10 18/20 GT GT GT GT GT GT GT GT GC AT
11485293 CT * 13 24/26 CT CT CT CA CT CT CT CT TT CT CT CT CT
11488410 TA * 11 20/22 TA TA TA TA TA TA TA TA GC TA TA
11492051 TC * 12 22/24 TC TC TC TC TC TC TC AC TC TC TC CC
11592971 GA * 10 18/20 GA GA GA GA GA GA GA GA GG GG
11643617 AG * 10 18/20 AG AG AA AA AG AG AG AG AG AG
11667270 AC * 12 23/24 AC GC AC AC AC AC AC AC AC AC AC AC
11672063 TC * 12 22/24 TC TC TC TC TC TC TT TC TC TT TC TC
11752175 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AT TG
11767520 CA * 10 18/20 CA CA CA CA CA CA CA TA CA CT
11819130 AG * 13 24/26 AG AG AG AG AG AG AG AG AG AG AG AC AC
11924702 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AT TG
11940050 CA * 10 18/20 CA CA CA CA CA CA CA TA CA CT
11969065 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AT TG
11986575 GA * 11 20/22 GA GA CA GA GA GA GA GA GA GA GG
12021971 TG * 10 18/20 TG TG TG TG TG TG TG TG TG AC
12094656 AT * 12 22/24 AT AT AT AT AT AT AT AT AT AT TT AC
12116757 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AT TG
12134263 GA * 11 20/22 GA GA CA GA GA GA GA GA GA GA GG
12169647 TG * 10 18/20 TG TG TG TG TG TG TG TG TG AC
12243185 AG * 13 24/26 AG AG AG AG AG AG AG AG AG AG AG AC AC
12308022 TA * 10 18/20 TA TT TT TA TA TA TA TA TA TA
12331107 AG * 12 22/24 AG GG AC AG AG AG AG AG AG AG AG AG
12343879 AT * 11 21/22 AT AT AT AT AT AT AT AT AT AT AA
12355350 TC * 11 20/22 TC TC CC TC TC TC TC TC TG TC TC
12387852 AG * 10 19/20 AG CG AG AG AG AG AG AG AG AG
12438742 AG * 13 24/26 AG AG AG AG AG AG AG AG AG AG AG AC AC
12554124 TA * 10 18/20 TA TT TT TA TA TA TA TA TA TA
12577201 AG * 12 22/24 AG GG AC AG AG AG AG AG AG AG AG AG
12589973 AT * 11 21/22 AT AT AT AT AT AT AT AT AT AT AA
12601440 TC * 11 20/22 TC TC CC TC TC TC TC TC TG TC TC
12633936 AG * 10 19/20 AG CG AG AG AG AG AG AG AG AG
12670899 TC * 10 18/20 TC TC TC AT TC TC TC TC TC TC
12672118 GA * 12 22/24 GA GG GA GA GA GA GA GA GA GA GA AA
12846067 CT * 11 20/22 CT CT CT CT CT CT CT CT CT CT TG
12927588 GA * 10 19/20 GA GA GA GA GA GA GA GA GA AA
12988410 CT * 10 18/20 CT CT CT CT CT CT CT CT CC AT
12994069 CA * 10 18/20 CA CA CC CA CA CC CA CA CA CA
13056386 AT * 11 20/22 AT AT AT AT AT AT AT AT AT TT TT
13133896 CT * 10 18/20 CT CT CT CT CT CT CT TT CT CG
13165876 TA * 10 18/20 TA TA TA TA TA TA TG GA TA TA
13165898 TA * 18 33/36 TA TA TA TA TA TA TA TA CA TA TA TA TA TA TA TA TG TG
13169906 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AA AA
13174807 TC * 10 19/20 TC TC TC TC TC TC TC TC TC TT
13174829 TC * 10 18/20 TC TC TC TA TT TC TC TC TC TC
13175287 TG * 11 20/22 TG TG TG TG TG CG TG CG TG TG TG
13190852 TC * 12 22/24 TC TC TC TC TC TC TC TC TC TT TC TT
13226365 AG * 85 153/170 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AA AT TT GC AG AA AA AG GG GT TT TA AG GA
13417174 AG * 11 20/22 AG AG AT AG AG AT AG AG AG AG AG
13478779 AT * 15 27/30 AT AT AT AT AT AT AT AT AT AT AT AT AT CA TT
13483543 AG * 13 24/26 AG AG AG AG AG AG AG AG AG AG AG TG CG
13512646 TC * 10 18/20 TC TC CC TC TG TC TC TC TC TC
13733674 AG * 17 31/34 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AC CA
13780579 AC * 10 18/20 AC CC CC AC AC AC AC AC AC AC
13798964 GA * 13 24/26 GA GA GA GA GA GA GA GA GA GA GA AT GA
13807017 CA * 10 18/20 CA CA CA CA CA CA CA CA GA GA
13807741 TC * 28 52/56 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TT TT CT
13808556 CT * 12 22/24 CT CT CT CT CT CT CT CT CT CT CT TC
13935464 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AT TG
13951955 TA * 13 24/26 TA TA TA TA TA TA TA TA TA TA AA TA GA
13973187 TC * 10 18/20 TC TC TC TC TC TC TA TC TA TC
13973780 CA * 13 25/26 CA CA CA CA CA CA CA CA CA CA CA CC CA
14034901 AT * 11 20/22 AT AT AT AT AT AT AT AT AT CA AT
14058597 CT * 10 19/20 CT CT CT CT CT CT CT CT CT CA
14075572 CT * 10 18/20 CT TG CT CT CT CT CT CT CT CT
14161894 TA * 10 18/20 TA AA AA TA TA TA TA TA TA TA
14207313 CA * 10 18/20 CA CA CA CA CA CT CA CT CA CA
14235542 TA * 11 20/22 TA GA TT TA TA TA TA TA TA TA TA
14374662 GA * 10 18/20 GA GA GA GA GA GA GA GA TA AA
14598662 TG * 15 27/30 TG TG TG TG TG TG TG TG TG TG TG TG AG TG CT
14598713 CA * 10 18/20 CA CA CA CA CA CA CA CA AA CG
14611212 AC * 18 34/36 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AA AC AC AT
14674609 TA * 15 28/30 TA TA GA CA TA TA TA TA TA TA TA TA TA TA TA
14710255 TC * 12 22/24 TC TC TC TA TC TA TC TC TC TC TC TC
14728607 AG * 68 123/136 AG AA AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG CG CG CG GG CA GG GA AA CC AG
14844863 TA * 10 19/20 TA TA TA TA TA TA TA TA TA GA
14851314 AC * 11 21/22 AC AC AA AC AC AC AC AC AC AC AC
14873594 TA * 15 27/30 TA TA TA TA TA TA TA TA TA TA TA GT TA TA GA
14943525 AG * 11 20/22 AG AG GA AG AG AG AG AG AG AG AG
15048554 AT * 13 24/26 AT TA AT AT AT AT AT AT AT AT AT AT AT
15084757 TC * 10 18/20 TC TC CC TC TC TC TC TC TT TC
15207126 CT * 15 27/30 CT CT CT CT CT CT CT CT CT CT CT CT CG CC TT
15429772 TC * 11 20/22 TC TC TC TC TC TC CC TC TT TC TC
15435796 TC * 10 18/20 TC TC TC TC TC CC TC TT TC TC
15886533 CA * 11 21/22 CA CA CA CA CA CA CA CA CA CA AA
-----------------------------------------------------------------------------------------
Total sequence length......................... 15887371
Minimum Di-Nucleotide repeat units............ 10
Mismatch allowed ............................. 10%
Total number of repeats detected.............. 318
-----------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 28 24 30 22 16 26 20 12 51 27 0 0
15 to 19 4 7 4 2 2 3 2 0 6 2 0 0
20 to 24 1 1 1 0 0 0 0 1 2 1 0 0
25 to 29 0 2 0 0 0 0 1 0 2 1 0 0
30 to 34 1 0 0 0 0 1 0 0 2 2 0 0
35 to 39 0 2 0 1 0 0 0 0 0 0 0 0
40 to 44 0 1 1 0 0 0 0 0 1 0 0 0
45 to 49 1 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 1 2 0 0 0 1 0 0 0 0 0
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Total 35 38 38 25 18 30 24 13 64 33 0 0
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Frequency distribution of different di-nucleotide repeat classes
35 AT + 38 TA = 73
38 AG + 25 GA + 33 CT + 64 TC = 160
13 GT + 24 TG + 30 CA + 18 AC = 85
0 GC + 0 CG = 0
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Di-Nucleotide repeats in C. elegans Chromosome-IV complete sequence
Minimum di-nucleotide repeating units = 10 (allowing a maximum of 10% mismatch)
Total 318 repeats covering 7992 / 8752 base pairs
Length distribution of all di-nucleotide repeats
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no. of repeat-units 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 >=50
total repeats 131 63 32 27 3 11 12 4 3 2 1 3 0 2 1 2 1 1 2 0 1 2 2 1 0 0 0 3 0 0 1 0 0 2 0 0 0 1 0 0 4
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Length distribution of different di-nucleotide repeat classes
no. of repeat-units 10-14 15-19 20-24 25-29 30-34 35-39 40-44 45-49 >=50
total repeats--> 256 32 7 6 6 3 3 1 4
AT 28 4 1 0 1 0 0 1 0
TA 24 7 1 2 0 2 1 0 1
AG 30 4 1 0 0 0 1 0 2
GA 22 2 0 0 0 1 0 0 0
AC 16 2 0 0 0 0 0 0 0
CA 26 3 0 0 1 0 0 0 0
TG 20 2 0 1 0 0 0 0 1
GT 12 0 1 0 0 0 0 0 0
TC 51 6 2 2 2 0 1 0 0
CT 27 2 1 1 2 0 0 0 0
GC 0 0 0 0 0 0 0 0 0
CG 0 0 0 0 0 0 0 0 0
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Sequence-wise distribution of di-nucleotide repeats
Sequence AT TA AG GA AC CA TG GT TC CT GC CG
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lcl|chr_IV -( 15887371 bp) 35 38 38 25 18 30 24 13 64 33 0 0
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Total ( 15887371 bp) 35 38 38 25 18 30 24 13 64 33 0 0
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Frequency distribution of different di-nucleotide repeat classes
35 AT + 38 TA = 73
38 AG + 25 GA + 33 CT + 64 TC = 160
13 GT + 24 TG + 30 CA + 18 AC = 85
0 GC + 0 CG = 0
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Frequency distribution of di-nucleotides repeated for 20 times or more
--repeats longer than 40 bp
3 AT + 7 TA = 10
4 AG + 1 GA + 4 CT + 7 TC = 16
1 GT + 2 TG + 1 CA + 0 AC = 4
0 GC + 0 CG = 0
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Total repeats >= 40 bp = 30
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© Division of Biochemical Sciences, National Chemical Laboratory, Pune 411008, INDIA