Tetra-Nucleotide Repeats in Genomic Sequences
Tetra-Nucleotide Repeats in
C. elegans Chromosome-III complete sequence
Genomic sequence...
lcl|chr_III
Position Repeat Coverage Repeat
151791 TGTA * 5 18/20 TGTA TGTC TGTA GGTA TGTA
377033 GGGA * 5 18/20 GGGA GGGA GCGA GGGA GGGG
478212 AAAT * 5 18/20 AAAT AAAT GAAT AAAT AATT
480245 TGTA * 5 18/20 TGTA TGTA TCTA TGTA TGTG
569089 TTAT * 6 23/24 TTAT TTAT TTAT TTAT CTAT TTAT
789095 AAAT * 5 18/20 AAAT TAAT AAAT AAAT AAAA
888663 AAAT * 5 18/20 AAAT GAAA AAAT AAAT AAAT
889288 AAAT * 5 18/20 AAAT AAAT GAAA AAAT AAAT
1060457 CAAA * 5 18/20 CAAA CAAC CAAA CAAA CTAA
1097707 GAAG * 5 18/20 GAAG CAAG GAAG GAAT GAAG
1252523 TACC * 6 22/24 TACC TACG TACC TACG TACC TACC
1252551 TACC * 5 19/20 TACC TACC TACC TACC TATC
1268400 TATT * 5 18/20 TATT ATTT TATT TATT TATT
1402770 TGCC * 5 18/20 TGCC TGCC TACA TGCC TGCC
1576842 AAAT * 5 18/20 AAAT CAAT AAAT CAAT AAAT
1601170 AAAG * 6 22/24 AAAG AAAG AAAC AAAG AAAG AAAC
1675131 ATTA * 6 22/24 ATTA ATTA ATTA ATTA ATTA TTTT
1686880 TACC * 5 18/20 TACC TACC TACC TAGA TACC
1767749 GAGT * 5 18/20 GAGT GAGA GAGT GAGA GAGT
1926318 GTTT * 5 18/20 GTTT TTTG GTTT GTTT GTTT
2018609 ACTT * 5 19/20 ACTT ACCT ACTT ACTT ACTT
2051394 TATT * 5 18/20 TATT TATT TATT TATT ATTT
2150124 AACA * 8 31/32 AACA AACA AACA AACA AACA AACA AACA AATA
2166870 CCTA * 5 18/20 CCTA CCTA CATG CCTA CCTA
2214349 AATT * 5 19/20 AATT AATT AATT AATT ATTT
2232254 GCCT * 6 22/24 GCCT GCCT GCCC ACCT GCCT GCCT
2241492 TATT * 5 18/20 TATT TATT TATT TATT TTTC
2271842 GCAG * 5 19/20 GCAG GTAG GCAG GCAG GCAG
2272930 CCTA * 5 18/20 CCTA CCTA CCTT CGTA CCTA
2278382 GCCT * 5 18/20 GCCT GCCT GCCT ACGT GCCT
2309324 CTGC * 5 18/20 CTGC CTGC CTAC GTGC CTGC
2359660 TGCC * 5 18/20 TGCC TGCC TACC TACC TGCC
2384903 GTAG * 5 18/20 GTAG GCAG GTAG GTAG GCAG
2415053 TAGA * 5 18/20 TAGA TAGA TAGA GAGA GAGA
2440409 CCTA * 5 18/20 CCTA CATA CCTA CATA CCTA
2440429 CATA * 5 18/20 CATA CCTA CATA CCTA CATA
2440456 ACCT * 5 18/20 ACCT ACAT ACCT ACAT ACCT
2440479 TACC * 5 19/20 TACC TACA TACC TACC TACC
2460251 TCTT * 5 18/20 TCTT TCTT TCTT TCTT TAAT
2473755 TCTT * 5 18/20 TCTT TTTT TCTT TCTT TCTC
2474212 GCAG * 5 19/20 GCAG GCAG GCAG ACAG GCAG
2474232 CAGG * 6 22/24 CAGG CAGG CAGA CAGG CAGG CATG
2474506 TGCC * 6 22/24 TGCC TGCC TGTC TGCC TGCC TGCT
2553189 TAGG * 5 18/20 TAGG TAGG CATG TAGG TAGG
2553486 AAGT * 8 30/32 AAGT AAGT AAGT AAGT AAGT AAGT AAGT AATC
2595118 TCAC * 5 18/20 TCAC TCAC TCAC TCAG TCAA
2637788 TTTG * 5 18/20 TTTG TTTA TTTG TTTA TTTG
2657080 TTAA * 5 18/20 TTAA TAAA GTAA TTAA TTAA
2666830 GACT * 5 18/20 GACT GTCT TACT GACT GACT
2674918 TTAT * 5 18/20 TTAT TTAT TTAT TTTT TTGT
2678865 GGTA * 5 18/20 GGTA GGCA GGTA GGTA GGCA
2785206 GGTA * 5 18/20 GGTA GGTA GGCA CGTA GGTA
2859533 TGCC * 5 19/20 TGCC TGCC TGCC TACC TGCC
2884528 AGGC * 5 18/20 AGGC AGGC ACGT AGGC AGGC
3074403 CTCA * 5 18/20 CTCA CTCA CTCA CTCC CACA
3101780 TCTT * 5 18/20 TCTT TCTT TTTT TCTT TTTT
3205456 TTTA * 5 18/20 TTTA TTTA TTTA TTTA TTAT
3275421 TTTA * 8 29/32 TTTA TTTA TTTA TTTA TTTA TTTA TTTA ATAC
3368233 ACAT * 5 18/20 ACAT TCAC ACAT ACAT ACAT
3412117 TTAT * 5 18/20 TTAT TAAT TTAT TAAT TTAT
3459269 AAAC * 5 18/20 AAAC TAAC AAAC AAAC AAAT
3501373 AAAG * 5 18/20 AAAG AAAG AAGA AAAG AAAG
3615180 TACT * 5 18/20 TACT TTCT TACA TACT TACT
3675078 ATTT * 5 18/20 ATTT TTGT ATTT ATTT ATTT
3800903 AAGA * 5 18/20 AAGA AAGA AAAG AAGA AAGA
3809295 AGAA * 5 18/20 AGAA AGAA AGAA AGAC ATAA
3905839 TGCC * 5 18/20 TGCC TGCC TGCC TACC TGAC
4078113 AATT * 5 18/20 AATT AATT AATT TATT CATT
4112331 AATT * 5 18/20 AATT AAGT AATT AATT CATT
4119019 TTCT * 5 18/20 TTCT TTCT TTCT CTCT CTCT
4137291 ATTT * 5 18/20 ATTT AATT TTTT ATTT ATTT
4137573 TTAG * 6 22/24 TTAG TTAG TTAC TTAG TTAC TTAG
4231177 TGCC * 5 18/20 TGCC TGCG TGCC TGCC TACC
4237700 AATA * 6 23/24 AATA AATA AATA AATA AATA AAAA
4278302 ATTT * 5 18/20 ATTT ATTT ATTC ATTT ATAT
4417319 AGGC * 5 18/20 AGGC AGGC AAGT AGGC AGGC
4421294 AGGC * 5 18/20 AGGC AAGC AGGC AAGC AGGC
4540997 GTAG * 5 18/20 GTAG GTAG GTAG GCAG GAAG
4640340 TTTC * 5 18/20 TTTC TTTC TTTT TTTC TTTT
4792332 AAAT * 5 18/20 AAAT AAAG AAAT AATT AAAT
4887912 TTAT * 5 18/20 TTAT TTAT TTAT GTAT TCAT
4894869 TATT * 6 22/24 TATT TATA TATT TTTT TATT TATT
4938760 TTTA * 5 18/20 TTTA TTTA TTTA TTCA TTCA
4950523 TCTT * 6 22/24 TCTT TCTT TCTT TCTT TCTC TCTC
5111816 TTCT * 5 18/20 TTCT TTCT TTCT TTTT TTTT
5117977 AGGT * 5 18/20 AGGT ATGT AGGT ATGT AGGT
5176782 CAGC * 5 18/20 CAGC CAGC CAGT CAGC CACC
5248791 TTAT * 5 18/20 TTAT TTAT TTCT ATAT TTAT
5453949 TGGT * 5 18/20 TGGT TGAT TGGT TGAT TGGT
5491213 TTAA * 5 18/20 TTAA TTAA TTTA TTTA TTAA
5553453 AATT * 5 18/20 AATT AATT AATT TATT TATT
5562853 TTTG * 5 18/20 TTTG ATAG TTTG TTTG TTTG
5698494 TTAT * 8 29/32 TTAT TTAT TTAT TTAT TTTT ATAT TTAT TCAT
5723608 TATT * 8 30/32 TATT TATT TATT TATT TATT TATT TATT CATC
5815441 TACT * 5 18/20 TACT TACT TACT TAGA TACT
5827573 GGTA * 5 18/20 GGTA GGTA CGTA GGCA GGTA
5838138 ATAA * 5 18/20 ATAA ATCA ACAA ATAA ATAA
5849139 AAGT * 6 23/24 AAGT AAGT AAGT AAGT AAGT AAGA
6134776 TTTC * 5 18/20 TTTC TTTC TTTC TTTC TCTA
6192654 TTTA * 5 19/20 TTTA TTTA TTTA TTTA TTTT
6198537 TTGA * 5 18/20 TTGA TTGA TCGA TGGA TTGA
6482763 TTAC * 7 26/28 TTAC TTAC TTAC TTAC TTAG TTAC TTAG
6546633 ATAA * 5 18/20 ATAA ATAA ATAA ACAA AAAA
6549309 CGTT * 5 19/20 CGTT CGTT TGTT CGTT CGTT
6739281 TAAA * 5 18/20 TAAA TAAA ATAA TAAA TAAA
6823177 AATA * 5 18/20 AATA AATA AATA AATA TTTA
7031256 GGCA * 5 18/20 GGCA GGCA GGCA GACA GGTA
7047562 CACT * 5 18/20 CACT CACT CACT CACG CAGT
7068178 AAAT * 5 20/20 AAAT AAAT AAAT AAAT AAAT
7086066 ATTT * 5 18/20 ATTT ATTA ATTT ATTT ATTC
7148139 TTAA * 5 18/20 TTAA TTAA TTTA TTAA TTTA
7175909 TTAT * 5 18/20 TTAT TTAA TTAC TTAT TTAT
7200830 TTTA * 6 22/24 TTTA AGTA TTTA TTTA TTTA TTTA
7236079 AATA * 5 18/20 AATA AATA AATA AATA AAAC
7279275 CACT * 5 19/20 CACT CACT CACT CACT CCCT
7302535 GCCT * 8 31/32 GCCT GCCT GCCT GCCG GCCT GCCT GCCT GCCT
7347456 TTAA * 5 18/20 TTAA TTAA TTTT TTAA TTAA
7415260 ATTT * 5 18/20 ATTT ATTT AGTT ATTT GTTT
7441039 AGGC * 5 18/20 AGGC AGGC AGGC ACGC AAGC
7483196 AGGT * 5 18/20 AGGT AGGT CAGT AGGT AGGT
7599733 TTAT * 5 18/20 TTAT TTAT TTAT TTAT ATCT
7614400 CAAC * 5 20/20 CAAC CAAC CAAC CAAC CAAC
7620430 GGCT * 5 18/20 GGCT GGCT GGAT GGAT GGCT
7645396 AATA * 5 18/20 AATA AATA AATA AATA TTTA
7663390 TTTA * 6 23/24 TTTA TTTA TTTA TTTA TTTA TTTT
7776663 TTTA * 5 18/20 TTTA TTCA TTTA TTTA TTCA
7829642 GGCA * 5 19/20 GGCA GGCA GGTA GGCA GGCA
8070067 AATA * 5 18/20 AATA AACA AATA AATA AATT
8116548 ATCT * 5 18/20 ATCT ATCT ATCT ATCT CTCA
8119719 ATCA * 5 19/20 ATCA ATCA ATCA ATTA ATCA
8277612 CATC * 6 22/24 CATC CATC CACC CATC CATC CATT
8301799 AAAG * 5 19/20 AAAG AAAT AAAG AAAG AAAG
8342329 AATT * 5 18/20 AATT AATT AATA AAAT AATT
8352552 ATAA * 5 18/20 ATAA ATAA ATTA ATAA TTAA
8364876 TATT * 5 18/20 TATT TAAA TATT TATT TATT
8424069 TTTA * 5 18/20 TTTA TTGA TTGA TTTA TTTA
8439795 CAGT * 5 18/20 CAGT CAGC CAGT CAGT CAGC
8573864 AATA * 5 18/20 AATA AATA AATA AATA CAAA
8603977 TATT * 5 18/20 TATT TATT CATT TATT TTTT
8673614 TATT * 5 18/20 TATT TTTT TATT TTTT TATT
8790530 TGAG * 5 18/20 TGAG TGAG TGAG GGAG TAAG
8902645 AATT * 5 18/20 AATT ATAT AATT AATT AATT
8985607 GGTA * 5 18/20 GGTA TGTA GGTA GGTA GGCA
8985876 TAGG * 5 18/20 TAGG TATA TAGG TAGG TAGG
8998675 AAAT * 5 18/20 AAAT AAAT ATAT AAAA AAAT
9067450 GGTA * 5 18/20 GGTA TGTA GGTA GGTA GGCA
9067719 TAGG * 5 18/20 TAGG TATA TAGG TAGG TAGG
9079468 TTAA * 5 19/20 TTAA TTAA TTAA TTAA ATAA
9121137 ATTT * 5 18/20 ATTT TTTT ATTT TTTT ATTT
9149869 TTAA * 5 19/20 TTAA TTAA TTAA TTAA ATAA
9191293 ATTT * 5 18/20 ATTT TTTT ATTT TTTT ATTT
9311728 TTTG * 5 19/20 TTTG TTTG TTTG CTTG TTTG
9349642 CCCT * 5 18/20 CCCT CCCT CCCT CTCT CTCT
9355151 TATT * 5 19/20 TATT TATT CATT TATT TATT
9451639 CATA * 5 18/20 CATA CCTA CATA CCTA CATA
9451684 CTAC * 5 18/20 CTAC ATAC CTAC ATAC CTAC
9451705 TACC * 6 22/24 TACC TACA TACC TGCC TACC TACC
9472540 ATTT * 5 18/20 ATTT ATTT ATTG ATTT TTTT
9521802 TATT * 10 37/40 TATT TATT TATT TATT TATT TATT TATT TATT TATT TTAA
9607151 ACTG * 5 19/20 ACTG ACTG ACTG ACTG ACAG
9633766 TCCA * 5 19/20 TCCA TCCA TCCA TCCT TCCA
9676063 GCAG * 5 18/20 GCAG GCAG GCAG GCAG ACAT
9721830 TTTC * 5 18/20 TTTC TTTT TTTT TTTC TTTC
9738214 AAAT * 5 18/20 AAAT AAAT AAAA AAAT CAAT
9743270 TTTA * 7 27/28 TTTA TTTA TTTA TTTA TTTA TTTA TTCA
9749774 ATTT * 5 18/20 ATTT ATTT ATTT ATTT TTGT
9774333 CGGG * 5 18/20 CGGG CGGT CGGG CGGG CGGT
9785545 AAAT * 5 18/20 AAAT AAAT AAAT AAAC AACT
9799828 TGTC * 5 18/20 TGTC TCTC TGTC TGTC TTTC
9911316 CAGG * 5 18/20 CAGG CAGG CAGG CAGG CGTG
9940788 CTGG * 5 18/20 CTGG CTGG CTGG CTGG CTCA
9976968 GCCT * 5 18/20 GCCT GCCT GCCT GCCT ACAT
10004127 AATC * 5 18/20 AATC AATC AATA AATC ACTC
10105145 TATT * 5 20/20 TATT TATT TATT TATT TATT
10264499 AGGT * 5 18/20 AGGT AGGC ATGT AGGT AGGT
10318714 TATT * 5 18/20 TATT TATT TATT TATT CTTT
10366307 ACCT * 8 30/32 ACCT ACCT ACCT ACCT ACCT ACCT ACCT ATAT
10369518 TAGG * 5 18/20 TAGG TAGC TGGG TAGG TAGG
10369540 GGTA * 39 142/156 GGTA GGTA GGTA GGTA GGTA GGTA GGTA GGTA GGTA GGTA GGTA GGTA GGCA GATA GGTA GGTA GGTA GGTA GGTA GGTA GGTA GGTA GGTA GGTA GGTA GGTA GGTA GGTA GGTA GGTA GGTA GGCA GGTA GGTA GGTA GTCG GTTT CCCA AAAA
10388226 GGTA * 5 18/20 GGTA GGTC GGTA GGCA GGTA
10431590 GCCT * 5 18/20 GCCT GCCT ACAT GCCT GCCT
10432126 TGCC * 5 18/20 TGCC TGCC TGCC TACA TGCC
10454655 TATT * 5 18/20 TATT TATT TATT TATT CTTT
10502246 ACCT * 8 30/32 ACCT ACCT ACCT ACCT ACCT ACCT ACCT ATAT
10505457 TAGG * 5 18/20 TAGG TAGC TGGG TAGG TAGG
10505479 GGTA * 39 142/156 GGTA GGTA GGTA GGTA GGTA GGTA GGTA GGTA GGTA GGTA GGTA GGTA GGCA GATA GGTA GGTA GGTA GGTA GGTA GGTA GGTA GGTA GGTA GGTA GGTA GGTA GGTA GGTA GGTA GGTA GGTA GGCA GGTA GGTA GGTA GTCG GTTT CCCA AAAA
10524165 GGTA * 5 18/20 GGTA GGTC GGTA GGCA GGTA
10567529 GCCT * 5 18/20 GCCT GCCT ACAT GCCT GCCT
10568065 TGCC * 5 18/20 TGCC TGCC TGCC TACA TGCC
10584089 ACGG * 6 22/24 ACGG ACGG ACGG ACGG ACGG GGGG
10629532 TGCC * 7 27/28 TGCC TACC TGCC TGCC TGCC TGCC TGCC
10672626 AGGC * 5 19/20 AGGC AGGC AGGC AGGC ACGC
10769874 GCCT * 5 18/20 GCCT GCCT GCCT GCCT GGCC
10804092 TATT * 5 18/20 TATT TTTT TACT TATT TATT
10838020 AAAG * 5 18/20 AAAG ACAG AAAG AAAG GAAG
10876667 AGGC * 6 22/24 AGGC AGAC GGGC AGGC AGGC AGGC
10949365 GCCT * 5 18/20 GCCT GCCT GCCT GCCT GGCC
10997414 AATA * 5 18/20 AATA AATA AGTA AAAA AATA
11020813 AAAG * 5 18/20 AAAG ACAG AAAG AAAG GAAG
11059879 AGGC * 6 22/24 AGGC AGAC GGGC AGGC AGGC AGGC
11264962 AGGT * 6 22/24 AGGT AAGT AGGT AGGT ATGT AGGT
11265626 GTAG * 9 34/36 GTAG GCAG GTAG GTAG ATAG GTAG GTAG GTAG GTAG
11265675 GTAG * 5 19/20 GTAG GTAG GTAG GTAG GCAG
11303301 AGGT * 6 22/24 AGGT AAGT AGGT AGGT ATGT AGGT
11303965 GTAG * 9 34/36 GTAG GCAG GTAG GTAG ATAG GTAG GTAG GTAG GTAG
11304014 GTAG * 5 19/20 GTAG GTAG GTAG GTAG GCAG
11360275 AACA * 7 26/28 AACA AACA AACA AACA AACA GACA TACA
11400977 AGGC * 5 19/20 AGGC AGAC AGGC AGGC AGGC
11401033 GGCA * 5 18/20 GGCA GGCA GGCA GGTA GGTA
11440171 ACAA * 5 18/20 ACAA ACAA ACAA ACAT ACAG
11461643 GCCT * 5 19/20 GCCT GCCT GCCT ACCT GCCT
11485540 TGCC * 5 18/20 TGCC TGCC TGCC TCCA TGCC
11486156 GTTT * 8 30/32 GTTT GATT TTTT GTTT GTTT GTTT GTTT GTTT
11570222 AGGT * 5 18/20 AGGT AGGT AGGC AGGT AGGC
11639765 TAAG * 6 22/24 TAAG TAAC TAAG TAAG TAAG TAAA
11646288 AGGC * 5 18/20 AGGC AGGT AGGC AGGC AGAC
11660591 CTTA * 8 31/32 CTTA CTTA CTTA CTTA CTTA CTTA CTTA CTTT
11661708 TTTA * 5 18/20 TTTA TTTA TTTA TTTT TTTG
11665297 GCCT * 6 22/24 GCCT GCCT GCCT ACAT GCCT GCCT
11709833 TATT * 6 22/24 TATT TATT TATT TATT TATT TACG
11719231 TGCC * 5 18/20 TGCC TGCC TACC TACC TGCC
11742289 AATC * 5 18/20 AATC AAAA AATC AATC AATC
11743640 TGCC * 5 19/20 TGCC TGCC TGCC TGCC TGCT
11969140 GAAT * 5 18/20 GAAT GAAT GAAT GAAA GAAG
11973651 ATTT * 5 18/20 ATTT ATTT ATTT TTTT TTTT
-----------------------------------------------------------------------------
Total sequence length......................... 12114540
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 225
-----------------------------------------------------------------------------
Frequency of Tetra-Nucleotide Repeats
AAAT-10 AAAG-5 AAAC-1 AATA-7 AATT-6 AATC-2 AAGA-1 AAGT-2
AACA-2 ATAA-3 ATTA-1 ATTT-10 ATCA-1 ATCT-1 AGAA-1 AGGT-6
AGGC-9 ACAA-1 ACAT-1 ACTT-1 ACTG-1 ACGG-1 ACCT-3 TAAA-1
TAAG-1 TATT-15 TAGA-1 TAGG-5 TACT-2 TACC-5 TTAA-6 TTAT-8
TTAG-1 TTAC-1 TTTA-10 TTTG-3 TTTC-3 TTGA-1 TTCT-2 TGAG-1
TGTA-2 TGTC-1 TGGT-1 TGCC-12 TCAC-1 TCTT-4 TCCA-1 GAAT-1
GAAG-1 GAGT-1 GACT-1 GTAG-6 GTTT-2 GGTA-9 GGGA-1 GGCA-3
GGCT-1 GCAG-3 GCCT-10 CAAA-1 CAAC-1 CATA-2 CATC-1 CAGT-1
CAGG-2 CAGC-1 CACT-2 CTAC-1 CTTA-1 CTGG-1 CTGC-1 CTCA-1
CGTT-1 CGGG-1 CCTA-3 CCCT-1
----------------------------------------------------------------------------
Tetra-Nucleotide repeats in C. elegans Chromosome-III complete sequence
Minimum tetra-nucleotide repeating units = 5 (allowing a maximum of 10% mismatch)
Total 1 sequences searched with a total of 12114540 bp length
Total 225 repeats covering 4635 / 5072 base pairs
Length distribution of all tetra-nucleotide repeats
----------------------------------------------------------------------------------------------------------------------------------------------------
No. of repeat units 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 >=25
total repeats 182 24 4 10 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2
----------------------------------------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tetra-nucleotide repeat classes
10-AAAT 7-AATA 3-ATAA 1-TAAA 10-ATTT 10-TTTA 8-TTAT 15-TATT = 64
5-AAAG 1-AAGA 1-AGAA 0-GAAA 0-CTTT 3-TTTC 2-TTCT 4-TCTT = 16
1-AAAC 2-AACA 1-ACAA 1-CAAA 2-GTTT 3-TTTG 0-TTGT 0-TGTT = 10
6-AATT 1-ATTA 6-TTAA 0-TAAT = 13
0-AATG 0-ATGA 0-TGAA 1-GAAT 0-CATT 0-ATTC 0-TTCA 0-TCAT = 1
2-AATC 1-ATCA 0-TCAA 0-CAAT 0-GATT 0-ATTG 1-TTGA 0-TGAT = 4
2-AAGT 0-AGTA 0-GTAA 1-TAAG 1-ACTT 1-CTTA 1-TTAC 2-TACT = 8
0-AAGG 0-AGGA 0-GGAA 1-GAAG 0-CCTT 0-CTTC 0-TTCC 0-TCCT = 1
0-AAGC 0-AGCA 0-GCAA 0-CAAG 0-GCTT 0-CTTG 0-TTGC 0-TGCT = 0
0-AACT 0-ACTA 0-CTAA 0-TAAC 0-AGTT 0-GTTA 1-TTAG 0-TAGT = 1
0-AACG 0-ACGA 0-CGAA 0-GAAC 1-CGTT 0-GTTC 0-TTCG 0-TCGT = 1
0-AACC 0-ACCA 0-CCAA 1-CAAC 0-GGTT 0-GTTG 0-TTGG 1-TGGT = 2
0-ATAG 1-TAGA 0-AGAT 0-GATA 0-CTAT 0-TATC 1-ATCT 0-TCTA = 2
0-ATAC 0-TACA 1-ACAT 2-CATA 0-GTAT 0-TATG 0-ATGT 2-TGTA = 5
0-ATGG 0-TGGA 0-GGAT 0-GATG 0-CCAT 1-CATC 0-ATCC 1-TCCA = 2
0-ATGC 0-TGCA 0-GCAT 0-CATG = 0
0-ATCG 0-TCGA 0-CGAT 0-GATC = 0
0-AGAC 0-GACA 0-ACAG 0-CAGA 0-GTCT 0-TCTG 0-CTGT 1-TGTC = 1
0-AGTG 0-GTGA 1-TGAG 1-GAGT 2-CACT 0-ACTC 1-CTCA 1-TCAC = 6
0-AGTC 0-GTCA 0-TCAG 1-CAGT 1-GACT 1-ACTG 0-CTGA 0-TGAC = 3
6-AGGT 9-GGTA 6-GTAG 5-TAGG 3-ACCT 3-CCTA 1-CTAC 5-TACC = 38
0-AGGG 1-GGGA 0-GGAG 0-GAGG 1-CCCT 0-CCTC 0-CTCC 0-TCCC = 2
9-AGGC 3-GGCA 3-GCAG 2-CAGG 10-GCCT 0-CCTG 1-CTGC 12-TGCC = 40
0-AGCT 0-GCTA 0-CTAG 0-TAGC = 0
0-AGCG 0-GCGA 0-CGAG 0-GAGC 0-CGCT 0-GCTC 0-CTCG 0-TCGC = 0
0-AGCC 0-GCCA 0-CCAG 1-CAGC 1-GGCT 0-GCTG 1-CTGG 0-TGGC = 3
0-ACGT 0-CGTA 0-GTAC 0-TACG = 0
1-ACGG 0-CGGA 0-GGAC 0-GACG 0-CCGT 0-CGTC 0-GTCC 0-TCCG = 1
0-ACGC 0-CGCA 0-GCAC 0-CACG 0-GCGT 0-CGTG 0-GTGC 0-TGCG = 0
0-ACCG 0-CCGA 0-CGAC 0-GACC 0-CGGT 0-GGTC 0-GTCG 0-TCGG = 0
0-ACCC 0-CCCA 0-CCAC 0-CACC 0-GGGT 0-GGTG 0-GTGG 0-TGGG = 0
0-GGGC 0-GGCG 0-GCGG 1-CGGG 0-GCCC 0-CCCG 0-CCGC 0-CGCC = 1
0-GGCC 0-GCCG 0-CCGG 0-CGGC = 0
----------------------------------------------------------------------------------------------------
----------------------------------------------------------------------------------------------------
Tetra-nucleotide repeats longer than 40 bp (repeated 10 or more times)
0-AAAT 0-AATA 0-ATAA 0-TAAA 0-ATTT 0-TTTA 0-TTAT 1-TATT = 1
0-AAAG 0-AAGA 0-AGAA 0-GAAA 0-CTTT 0-TTTC 0-TTCT 0-TCTT = 0
0-AAAC 0-AACA 0-ACAA 0-CAAA 0-GTTT 0-TTTG 0-TTGT 0-TGTT = 0
0-AATT 0-ATTA 0-TTAA 0-TAAT = 0
0-AATG 0-ATGA 0-TGAA 0-GAAT 0-CATT 0-ATTC 0-TTCA 0-TCAT = 0
0-AATC 0-ATCA 0-TCAA 0-CAAT 0-GATT 0-ATTG 0-TTGA 0-TGAT = 0
0-AAGT 0-AGTA 0-GTAA 0-TAAG 0-ACTT 0-CTTA 0-TTAC 0-TACT = 0
0-AAGG 0-AGGA 0-GGAA 0-GAAG 0-CCTT 0-CTTC 0-TTCC 0-TCCT = 0
0-AAGC 0-AGCA 0-GCAA 0-CAAG 0-GCTT 0-CTTG 0-TTGC 0-TGCT = 0
0-AACT 0-ACTA 0-CTAA 0-TAAC 0-AGTT 0-GTTA 0-TTAG 0-TAGT = 0
0-AACG 0-ACGA 0-CGAA 0-GAAC 0-CGTT 0-GTTC 0-TTCG 0-TCGT = 0
0-AACC 0-ACCA 0-CCAA 0-CAAC 0-GGTT 0-GTTG 0-TTGG 0-TGGT = 0
0-ATAG 0-TAGA 0-AGAT 0-GATA 0-CTAT 0-TATC 0-ATCT 0-TCTA = 0
0-ATAC 0-TACA 0-ACAT 0-CATA 0-GTAT 0-TATG 0-ATGT 0-TGTA = 0
0-ATGG 0-TGGA 0-GGAT 0-GATG 0-CCAT 0-CATC 0-ATCC 0-TCCA = 0
0-ATGC 0-TGCA 0-GCAT 0-CATG = 0
0-ATCG 0-TCGA 0-CGAT 0-GATC = 0
0-AGAC 0-GACA 0-ACAG 0-CAGA 0-GTCT 0-TCTG 0-CTGT 0-TGTC = 0
0-AGTG 0-GTGA 0-TGAG 0-GAGT 0-CACT 0-ACTC 0-CTCA 0-TCAC = 0
0-AGTC 0-GTCA 0-TCAG 0-CAGT 0-GACT 0-ACTG 0-CTGA 0-TGAC = 0
0-AGGT 2-GGTA 0-GTAG 0-TAGG 0-ACCT 0-CCTA 0-CTAC 0-TACC = 2
0-AGGG 0-GGGA 0-GGAG 0-GAGG 0-CCCT 0-CCTC 0-CTCC 0-TCCC = 0
0-AGGC 0-GGCA 0-GCAG 0-CAGG 0-GCCT 0-CCTG 0-CTGC 0-TGCC = 0
0-AGCT 0-GCTA 0-CTAG 0-TAGC = 0
0-AGCG 0-GCGA 0-CGAG 0-GAGC 0-CGCT 0-GCTC 0-CTCG 0-TCGC = 0
0-AGCC 0-GCCA 0-CCAG 0-CAGC 0-GGCT 0-GCTG 0-CTGG 0-TGGC = 0
0-ACGT 0-CGTA 0-GTAC 0-TACG = 0
0-ACGG 0-CGGA 0-GGAC 0-GACG 0-CCGT 0-CGTC 0-GTCC 0-TCCG = 0
0-ACGC 0-CGCA 0-GCAC 0-CACG 0-GCGT 0-CGTG 0-GTGC 0-TGCG = 0
0-ACCG 0-CCGA 0-CGAC 0-GACC 0-CGGT 0-GGTC 0-GTCG 0-TCGG = 0
0-ACCC 0-CCCA 0-CCAC 0-CACC 0-GGGT 0-GGTG 0-GTGG 0-TGGG = 0
0-GGGC 0-GGCG 0-GCGG 0-CGGG 0-GCCC 0-CCCG 0-CCGC 0-CGCC = 0
0-GGCC 0-GCCG 0-CCGG 0-CGGC = 0
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Total repeats longer than 40 bp = 3
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© Division of Biochemical Sciences, National Chemical Laboratory, Pune 411008, INDIA