Tri-Nucleotide Repeats in Genomic Sequences
Tri-Nucleotide Repeats in
C. elegans Chromosome-III complete sequence
Genomic sequence
lcl|chr_III
Position Repeat Coverage Repeat
69930 GAT * 8 22/24 GAT GAT GAT GAT GGT GGT GAT GAT
215076 TAA * 7 19/21 TAA TAG TAG TAA TAA TAA TAA
390150 AAT * 7 20/21 AAT ATT AAT AAT AAT AAT AAT
406980 AGA * 7 19/21 AGA AGA AGA AGA GGA AGA AGT
415912 CCT * 7 19/21 CCT CCT CAT CCT CAT CCT CCT
434494 CTT * 8 22/24 CTT CTT CTT ATT CTT CTT CTT CTC
436085 AAT * 7 19/21 AAT AAT AAT AGT AAT AAT AAA
514103 ATC * 7 19/21 ATC ATC ATC ATC ACC GTC ATC
550286 ATA * 7 20/21 ATA ATA ATA ATA ATA ATA ATT
562187 TCT * 7 19/21 TCT TCC TCT TCT TCT TCG TCT
562212 CTT * 7 19/21 CTT CTT CCT CTT CTT CCT CTT
578555 TAA * 7 19/21 TAA TAA TAA TGA TAA TAA TGA
595437 ATG * 7 19/21 ATG ATG ATG GTG ATG ATG CTG
598239 TGG * 8 22/24 TGG AGG TGG TGA TGG TGG TGG TGG
608315 TCT * 7 19/21 TCT TCT TCT TCT TCT CCT TTT
627241 AAG * 7 20/21 AAG TAG AAG AAG AAG AAG AAG
670027 CTT * 7 20/21 CTT CTT CTT TTT CTT CTT CTT
938882 GAG * 7 19/21 GAG GAG GAG GTG GAG GAG GAT
951081 TTC * 10 27/30 TTC TTC TTC TTC TTC GTC TTC TTC TTC GTA
960088 CCA * 7 19/21 CCA CCA CCA CCA CCA CCA CTC
987785 AAG * 7 19/21 AAG AAA ACG AAG AAG AAG AAG
987806 TCT * 7 19/21 TCT TCT TCT TCT TTT TCT TCG
1084565 AAC * 8 22/24 AAC AAC AAC AAC AAC AAC AAC AGG
1288738 TCA * 7 19/21 TCA TCA TCA TCA TCA TCG TCG
1290437 CTT * 11 30/33 CTT CTT CTT CTT CTT CTT CTT CTT CCT CCT CGT
1290734 GAA * 7 19/21 GAA GAA GAA GGA GAA GAT GAA
1292552 TTC * 9 25/27 TTC TTC TTC TTC TTC TTC TTT TTC GTC
1292696 TCT * 10 27/30 TCT TCT TCT TCT TCT TCT TCT TTT TCG TTT
1311975 CTG * 8 22/24 CTG TTG CTG CTG CTG CTG CTG TTG
1315537 TTG * 8 23/24 TTG CTG TTG TTG TTG TTG TTG TTG
1319104 GCT * 8 22/24 GCT GCT GCT GCT GCT GCT GCG GCG
1323499 GCG * 7 20/21 GCG GCG GCG GCG GCG GCG GAG
1324770 AGA * 8 22/24 AGA AGA AGA AGA AGA AGC AGG AGA
1406555 AGA * 8 22/24 AGA AGA AGG GGA AGA AGA AGA AGA
1476740 TAG * 8 23/24 TAG TAG TAG TAG TAG TAG TAG TAA
1477306 GTA * 10 28/30 GTA GTA TTA GTA GCA GTA GTA GTA GTA GTA
1560026 CTG * 7 19/21 CTG CTG GTG CTG ATG CTG CTG
1763518 CAT * 9 25/27 CAT CAT CAT CAT CAT CAT CAT CAT TAG
1797345 TTC * 7 19/21 TTC TTC TTC TTT TTC TTC TTG
1850040 CAT * 7 19/21 CAT CAT CAT CAT AAT CAT AAT
1850162 TGG * 7 19/21 TGG AGG TGG TGG AGG TGG TGG
1850384 GCA * 7 19/21 GCA GCA GCA GCA GCA CCA GAA
1851981 CTG * 12 33/36 CTG CTT CTG GTG CTG CTG CTG CTG CTG CTG CTT CTG
1852112 AAG * 7 19/21 AAG GAG AAG AAG AAG CAG AAG
1945416 GAT * 7 19/21 GAT GAG GAT GAT GAT GAT GAA
1963209 CCA * 7 19/21 CCA CCA CCA CCA CCA TCA GCA
1976297 AAG * 9 25/27 AAG GAG AAA AAG AAG AAG AAG AAG AAG
1995772 ATC * 7 19/21 ATC ATC ATC ATC ATC ATC TTT
2082914 TAA * 7 19/21 TAA TAA TAA TTA TAA TAA GAA
2156723 CAT * 7 20/21 CAT CAT CAT CAT CAT CTT CAT
2168623 TTA * 8 22/24 TTA ATA TTA TTA TTA TTA TTA TTG
2270187 GAG * 7 19/21 GAG GAG GAG GAG GAG GAG AGG
2335734 AGA * 10 27/30 AGA AGA AGA AGA AGA AGA AGA ACA AGG GGA
2345897 AAG * 7 19/21 AAG AAG AAG AAG AAG AAG TTG
2381743 CTT * 7 19/21 CTT CTC CTT TTT CTT CTT CTT
2407417 TTG * 7 19/21 TTG TTG TTG TTG TTG CTG CTG
2412023 GAA * 8 22/24 GAA CAA GAA GAA GAA GAA GAA GCA
2414082 ACC * 8 22/24 ACC ACC ACC ACC ATC ACC ACT ACC
2414191 CAC * 7 19/21 CAC AAC CAC CAC CAC CAT CAC
2416192 AGC * 7 20/21 AGC GGC AGC AGC AGC AGC AGC
2435479 GAT * 7 19/21 GAT GAT GAT GAT GAT TTT GAT
2446706 ATC * 7 19/21 ATC TTC ATT ATC ATC ATC ATC
2466280 GAA * 7 19/21 GAA GAA GAC GAA GAA GAA GAC
2470625 GAA * 7 19/21 GAA GAA TAA GAA GAA AAA GAA
2584081 TGA * 7 19/21 TGA TGA AGA TGA TGT TGA TGA
2589979 ATT * 7 19/21 ATT ATT ATT ATT ATT ATA AGT
2595250 GAA * 7 20/21 GAA GAA GAA GAA GAA GAA GCA
2603958 TAA * 7 19/21 TAA TAA TAA TAA TAA TAT TAG
2663205 ATT * 8 22/24 ATT ATT ACA ATT ATT ATT ATT ATT
2670169 ATC * 8 24/24 ATC ATC ATC ATC ATC ATC ATC ATC
2762774 AGA * 7 19/21 AGA AAA AGA AGA AGA AGA AGT
2766155 CTG * 7 19/21 CTG ATG CTG CTG CTT CTG CTG
2771958 AGA * 7 19/21 AGA ATA AGA AGG AGA AGA AGA
2802167 TGA * 7 19/21 TGA TGC TGA TGA TGA AGA TGA
2808737 CAA * 7 19/21 CAA CAA CAA CAA CAT CAT CAA
2856346 ATT * 9 25/27 ATT ATT ATT ATT ATT ATT ATT ATA ATA
2857082 TTC * 7 19/21 TTC TTC TTC TCC TTC TTC ATC
2857331 CTT * 8 23/24 CTT CTT CTT CTG CTT CTT CTT CTT
2893264 TCT * 7 19/21 TCT TTT TCA TCT TCT TCT TCT
2910208 TCT * 7 19/21 TCT TCT TCT TCT TCT TCG TCG
2919678 AAG * 7 19/21 AAG AAG AAA ACG AAG AAG AAG
2919704 GAA * 14 38/42 GAA GGA GAA GAA GAA GAA GAA GAA GAA GAA GAA GGA GCA GTA
2923000 TAC * 8 22/24 TAC TAC TAA TAC TAC TAC TAC TAA
2925617 AGA * 11 30/33 AGA AGA AGA AGA ATA AGA AGG AGA AGA AGG AGA
2927525 GGT * 7 20/21 GGT GGT TGT GGT GGT GGT GGT
2927551 CGG * 7 19/21 CGG AGG CGG AGG CGG CGG CGG
2928237 CTT * 7 19/21 CTT CTT CTT CTT CTT CCT TTT
2929370 TTC * 7 20/21 TTC TTC TGC TTC TTC TTC TTC
2945831 GCT * 7 19/21 GCT CCA GCT GCT GCT GCT GCT
2961973 CAT * 7 19/21 CAT TAT CAT CAT CAT CAT CGT
2999812 ATT * 7 19/21 ATT ATT ATT ATT ATT ATT TAT
2999935 AAG * 7 20/21 AAG AAG AAA AAG AAG AAG AAG
3009785 CCA * 7 19/21 CCA TCT CCA CCA CCA CCA CCA
3016931 TGA * 7 20/21 TGA TGA TGA TGA TGA TGA TGC
3051711 TGG * 8 22/24 TGG TGG TGG TGG TGG AAG TGG TGG
3072533 TGT * 7 20/21 TGT TGT TGC TGT TGT TGT TGT
3090875 CAT * 7 19/21 CAT CTT CAT CAT CTT CAT CAT
3093774 TCT * 7 19/21 TCT TCT TCA GCT TCT TCT TCT
3133381 ATC * 8 22/24 ATC ACC ATC ATC ATC ATC ATC ATT
3133447 CAC * 7 19/21 CAC CTC CAC CAC CAC CTC CAC
3136189 CCA * 7 19/21 CCA CCT CCA CCA CCA CCG CCA
3151230 GAT * 7 19/21 GAT GAT GGT GAT GAT CAT GAT
3307607 CTT * 7 19/21 CTT TTT CAT CTT CTT CTT CTT
3318488 GTT * 7 19/21 GTT GGT GTT GTT GTT GTT GTA
3437609 ATT * 12 33/36 ATT ATT ATT ATT ATT ATT ATT ATT GTT ATT ATT GCT
3443123 GCG * 7 19/21 GCG GCG GCG GCG GCG GCG GGC
3450128 TTC * 7 19/21 TTC TTC TTA TTT TTC TTC TTC
3459994 CTT * 7 19/21 CTT CTA CAT CTT CTT CTT CTT
3506256 ATC * 7 19/21 ATC ATC ATC ATC TTC TTC ATC
3513485 ATT * 7 19/21 ATT ATT ATT ATT ATT ATG AAT
3582569 AAG * 8 22/24 AAG AAG AAG AAG AAG AAG AAG CGG
3589176 GAT * 7 19/21 GAT GAT GAA GAT GAA GAT GAT
3616825 ATC * 7 19/21 ATC ATC GTA ATC ATC ATC ATC
3667099 GAA * 7 19/21 GAA AAA AAA GAA GAA GAA GAA
3748800 ATA * 8 23/24 ATA ATA ATA ATA ATA ATA ATA ATT
3759371 GAA * 8 22/24 GAA GAA GAA GCA GGA GAA GAA GAA
3761785 TCT * 8 22/24 TCT TCT TCT TCT TCT GCT TCT TCC
3810551 CTC * 7 19/21 CTC CTC CTC CTC CGC CTC CAC
3877641 AGA * 7 20/21 AGA TGA AGA AGA AGA AGA AGA
3894347 GAA * 7 20/21 GAA GAA GAA GAA GAA GAA GTA
3910414 ATG * 7 19/21 ATG ACG ATA ATG ATG ATG ATG
4040590 ATT * 7 19/21 ATT ATA ATT ATA ATT ATT ATT
4041269 ATG * 8 22/24 ATG AAG ATG ATG GTG ATG ATG ATG
4100489 GAG * 8 22/24 GAG GAG GTG GAG GAG GTG GAG GAG
4112873 CAG * 7 20/21 CAG CAG CGG CAG CAG CAG CAG
4214214 TGG * 10 27/30 TGG TGG TGG TGG CGG TGG TGG TGG AGG AGG
4233809 CTT * 7 19/21 CTT CTT CTT CTT CAT CTT GTT
4340560 TCC * 7 19/21 TCC TCC TCC TCC TCC TCG TCT
4350715 AAG * 7 19/21 AAG AAG AAG AAG AAG AAA ATG
4365082 TTG * 7 19/21 TTG TAA TTG TTG TTG TTG TTG
4423893 TCT * 7 19/21 TCT TTT CCT TCT TCT TCT TCT
4435255 TGT * 7 19/21 TGT TGT TCT TTT TGT TGT TGT
4468793 TTA * 7 20/21 TTA TTA TTA TTA TTA TTA TTT
4491532 TTG * 8 22/24 TTG TTG TTG TTG TTG TTG TTG TAC
4557846 CTT * 7 20/21 CTT CTT CTT CTT CTT CTT TTT
4608895 TCA * 7 19/21 TCA TCA TCA TCA TCA TCG TCT
4640318 AGA * 7 20/21 AGA AGA AGA AGA AGA AGA GGA
4644939 TGT * 8 22/24 TGT TGC TGC TGT TGT TGT TGT TGT
4648551 GAA * 7 19/21 GAA TAA GAA GAA GAA GAA GAC
4650092 AAG * 7 19/21 AAG AAG GAA AAG AAG AAG AAG
4657685 TGA * 12 34/36 TGA TGA TGA TGA AGA TGA TGA TGA TGA TGA TGA TGG
4708889 ACT * 7 19/21 ACT AGT ACT ACG ACT ACT ACT
4748111 TAC * 7 19/21 TAC TAC TAC TAC GAC TAA TAC
4784595 TAA * 10 27/30 TAA TAA TAA TAA TAA TAA TAG TAA TAA TTG
4790247 GAT * 8 22/24 GAT GAT GAT GAT GAT GAT GAA GGT
4802296 TCT * 7 20/21 TCT TCT TCT TTT TCT TCT TCT
4805080 GTC * 7 19/21 GTC GTC GTC GTC GTC GCC TTC
4805973 CTT * 8 22/24 CTT CTT TTT CTT CTT CTT CTT CTC
4814733 CCA * 8 22/24 CCA CCA CTA CCA CCA CCA CCA ACA
4918949 ATG * 7 19/21 ATG ATG ATG ATG ATG AGG AGG
5096938 ATT * 8 24/24 ATT ATT ATT ATT ATT ATT ATT ATT
5165730 GGC * 7 19/21 GGC GGC GGC GGC GGC GGA TGC
5200304 GAA * 9 25/27 GAA GAA GAA GAA GAG GAC GAA GAA GAA
5217545 TGA * 7 19/21 TGA TAA TGA TGA TGA TGA TAA
5221518 CAA * 7 19/21 CAA CAA CAA CAG CAG CAA CAA
5221695 CAT * 7 19/21 CAT CAC CAT CAT CAT CAC CAT
5344191 AAT * 7 19/21 AAT AAT AAT AAT AAT ATG AAT
5395650 TCC * 7 19/21 TCC TCC TTC TCC TCC GCC TCC
5626135 AAG * 7 19/21 AAG AAG AAT AAG AAC AAG AAG
5724772 AAT * 7 19/21 AAT AAT GAT AAT AAT TAT AAT
5749785 GAT * 7 19/21 GAT GAT GAT GAT GAT AAT GAA
5760726 TTG * 9 25/27 TTG TTG TTA TTG TTG TAG TTG TTG TTG
5761945 TTA * 8 22/24 TTA TTA TTA TTA TTA TTG TTA TAA
5829730 AGA * 7 19/21 AGA AGA AGG AGC AGA AGA AGA
5843489 AGG * 7 19/21 AGG AGG AGG AGG TGG AGG CGG
5962355 TCT * 7 19/21 TCT TCT TCT TCT TCT TCT CTT
6082605 TCA * 7 19/21 TCA TCA TCA TCA TCA TCA TTC
6091434 AAG * 8 22/24 AAG AAG AAG AAG AAG AAA AAG ATG
6152413 TTC * 7 19/21 TTC TTC TTG TTC TTC TTT TTC
6319605 GAA * 8 22/24 GAA GAA GAA GAA GAC GAA GAA GAC
6350095 TCA * 7 19/21 TCA TCA TCC TTA TCA TCA TCA
6370307 CAT * 8 22/24 CAT CTT CTT CAT CAT CAT CAT CAT
6372357 ATG * 7 19/21 ATG ATG ATG ATG AAG ATG ATT
6383648 TCT * 7 19/21 TCT TCT TCT TCT ACT TCT TTT
6475327 TGT * 7 19/21 TGT TGT TGT TGC TGT TTT TGT
6475979 GTT * 7 19/21 GTT GTT GTT GCT GTT GTT GCT
6545085 CTA * 7 19/21 CTA CTA CTA CTA CTA TTA CTT
6545136 CTT * 7 19/21 CTT CTT CTT CTT CTT CGT CGT
6603301 GCA * 7 20/21 GCA GCA GCA GCA GCG GCA GCA
6756804 GAT * 8 22/24 GAT GAT GAC GAT GAA GAT GAT GAT
6801468 GGC * 7 19/21 GGC GGC GGA GGA GGC GGC GGC
6816809 ATG * 7 19/21 ATG ATG ATG ATG ATG ATA CTG
6837207 TTG * 11 31/33 TTG CTG CTG TTG TTG TTG TTG TTG TTG TTG TTG
6846546 TTG * 8 22/24 TTG TTG TTG TTG CTG ATG TTG TTG
6936909 TTG * 8 22/24 TTG TTG CTG TTG CTG TTG TTG TTG
6936990 TTG * 7 19/21 TTG TTG TGG CTG TTG TTG TTG
7129610 AAG * 9 25/27 AAG AAG AAG AAG AAG TAG AAG ATG AAG
7129670 AAG * 8 22/24 AAG AAG AAG AAG ATG AAG ATG AAG
7215141 GAA * 7 19/21 GAA GAA GAA GAA GAA GAA GCT
7238267 GGC * 7 20/21 GGC GGC GGT GGC GGC GGC GGC
7247550 AAG * 7 19/21 AAG AAG AGG AAG AGG AAG AAG
7301345 ATC * 7 19/21 ATC ATC ATC ATC ATC ATC ACA
7332078 AAG * 7 19/21 AAG AAA AAG AAG ACG AAG AAG
7333272 ATA * 8 22/24 ATA ATA GTT ATA ATA ATA ATA ATA
7333419 ACA * 7 20/21 ACA ACA ACA ACA GCA ACA ACA
7347211 CAA * 8 22/24 CAA CAA CAG CAA CCA CAA CAA CAA
7387448 AAG * 14 38/42 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAC TGA
7387549 CTT * 7 19/21 CTT CTT CTT CTT CTA CTT CTC
7434086 CTT * 9 25/27 CTT CTT CTT CTT CTT CTT CTT CTT CAG
7461368 TCT * 7 19/21 TCT TCT TCT TCA TCT TCA TCT
7474934 GAA * 7 19/21 GAA GAG GAA TAA GAA GAA GAA
7557907 AGA * 7 19/21 AGA AGA AAA AGA AGA AGA ATA
7564309 CTT * 7 19/21 CTT CTT CTT CTG CTT CTT CTC
7617729 TTC * 7 19/21 TTC TTC TTC TTC CTT TTC TTC
7657076 CAT * 7 19/21 CAT CAT CAT CAT CAT CTT CAG
7693454 GTC * 7 19/21 GTC GTC GTC GTC CTC ATC GTC
7720480 TGA * 8 22/24 TGA TGA TGA TGA TGA TGA CAA TGA
7782512 GGA * 7 19/21 GGA GGA GGA GGA GGT GGA GGT
7782879 GGA * 7 19/21 GGA GGA GGA GGC GGC GGA GGA
7782951 GGA * 7 19/21 GGA GGA GGA GGT GGC GGA GGA
7783047 GGA * 8 22/24 GGA GGA GGA TGC GGA GGA GGA GGA
7783106 AGG * 7 19/21 AGG AGG AGG AGG ATG CGG AGG
7783484 CCA * 11 31/33 CCA CCA CCG CCA CCT CCA CCA CCA CCA CCA CCA
7784485 TCA * 7 19/21 TCA TCA TCA TCA TCT TCA TCT
7787778 TTC * 7 19/21 TTC TTC TTC TTT TTC TTC TTT
7801994 TTC * 7 20/21 TTC TTC TTC TTC TTC TTC GTC
7817691 AAT * 7 20/21 AAT AAA AAT AAT AAT AAT AAT
7853048 AGA * 7 20/21 AGA AGA AAA AGA AGA AGA AGA
7901361 GAA * 10 29/30 GAA GAA GAA GAA GAA TAA GAA GAA GAA GAA
7932967 AAG * 10 27/30 AAG AAG AAG AAG AAG AAG AAG AAG ACA GAG
7947087 GAA * 8 22/24 GAA GAA GAC GAA GAA GAG GAA GAA
7957037 CAT * 7 19/21 CAT CAT CAT CAT CAT CAT TTT
8031593 GAA * 7 19/21 GAA GAA GAA GAA GAT GAA GAG
8049852 GTG * 8 22/24 GTG GTG GTG GTG GAG GTG GAG GTG
8113984 CAG * 7 19/21 CAG CAA CAG CAA CAG CAG CAG
8143597 ATA * 8 22/24 ATA ATA ATA ATA ATA ATA ATA TTG
8280241 AAG * 8 22/24 AAG AAG AAA AAG ATG AAG AAG AAG
8282283 CGA * 7 19/21 CGA CGA CGA CGA CGA GGA GGA
8296300 AAG * 7 19/21 AAG AAG AAG AAG AAA AAG AAA
8387645 CTT * 7 19/21 CTT CTT CTT CTT CTT TTT CGT
8403654 AGA * 7 19/21 AGA AGA AGA AGA AAA AGA AGG
8454929 CTG * 7 19/21 CTG TTG CTG CTG CTG CTG TTG
8454959 TTG * 7 19/21 TTG TTG CTG TTG TTG CTG TTG
8484802 AAG * 8 23/24 AAG AAG AAA AAG AAG AAG AAG AAG
8588320 ACA * 7 19/21 ACA ACA ACA ACA GCA GCA ACA
8591594 GAT * 7 19/21 GAT GAT GAT GAT GGT GAA GAT
8592956 CAA * 8 23/24 CAA CAA CAA CCA CAA CAA CAA CAA
8694584 TGA * 7 19/21 TGA TGA GGA TGA TGA TGA AGA
8722628 CTA * 8 22/24 CTA CTA CTA CTA CTA CTA CTA AAA
8725572 AAG * 7 21/21 AAG AAG AAG AAG AAG AAG AAG
8761088 CTT * 7 19/21 CTT CTT TTT CTT CTT CTT CTC
8918688 AGA * 7 19/21 AGA TGA AGA AGA AAA AGA AGA
8930928 GAT * 7 19/21 GAT GAC GAT GAT GAT GAC GAT
8946505 TTC * 7 19/21 TTC TTC TTC TTC TTC TTC TCG
8980574 TTC * 8 22/24 TTC TTC TTC TTC TTC TTC TCC ATC
8992580 TAA * 8 23/24 TAA TAA TAA TAA TAA TAA TAA TTA
8998486 TTA * 7 19/21 TTA TTA TTA TTA TTA TTA AAA
9009466 TTA * 7 19/21 TTA TTT TTA TTA TTA TTA TTT
9052908 TCT * 7 20/21 TCT TCT GCT TCT TCT TCT TCT
9062383 TTC * 8 22/24 TTC TTC TTC TTC TTC TTC TCC ATC
9081244 CCA * 7 19/21 CCA CCA CCA TCT CCA CCA CCA
9133723 AGT * 8 22/24 AGT AGT AGT AGT AGT AGT AGT TCT
9151637 CCA * 7 19/21 CCA CCA CCA TCT CCA CCA CCA
9205101 AGT * 8 22/24 AGT AGT AGT AGT AGT AGT AGT TCT
9257033 TCT * 7 20/21 TCT TCT GCT TCT TCT TCT TCT
9287030 AAT * 7 19/21 AAT ACT AAT AAT AAT AAT AAA
9332038 CTC * 7 19/21 CTC CTC CTC CTC TTC ATC CTC
9347038 TTA * 7 19/21 TTA TTA TTA TTA TTA TTT CTA
9436256 ATC * 7 20/21 ATC ATC TTC ATC ATC ATC ATC
9439642 CAA * 9 25/27 CAA CAA CAA CAA CAG CAA CAG CAA CAA
9439801 CCA * 7 19/21 CCA CCA CCA CCG CCA CCA CCG
9440151 CCT * 7 19/21 CCT CCT CCT CCT CCT TCT CCC
9456989 TTA * 10 27/30 TTA TTA TTA TTA TTA TGA TTA TCA TTA TCA
9488456 TTC * 8 22/24 TTC TTC TTC TTC TTC TTC TAC TCC
9488522 AGA * 7 19/21 AGA AGA AGA AGA AGC AGA AGT
9489575 CTT * 7 20/21 CTT CTT CTT CTT CTT CGT CTT
9491177 TTC * 7 19/21 TTC TTC TTC TTC TTC TTT TTT
9493390 AGA * 7 19/21 AGA CGA AGA AGA AGA AGA AGC
9547857 GAA * 8 22/24 GAA GAA GAA GAA GAA GAA GCT GAA
9593585 AGA * 8 22/24 AGA AGA AGA AGA AGA AGA AGC GGA
9603752 TGT * 8 22/24 TGT TGC TGT TGT TGT TGC TGT TGT
9616102 GAT * 7 19/21 GAT GAT GAC GAT GAA GAT GAT
9631401 AGC * 8 22/24 AGC ACC AGC AGC AGA AGC AGC AGC
9632869 CTT * 7 20/21 CTT CTT CTT CTT CTT CTT CTC
9635326 TCT * 8 22/24 TCT TTT GCT TCT TCT TCT TCT TCT
9712669 ATT * 7 20/21 ATT ATT ATT ATT ATT ATT GTT
9728711 TTC * 7 19/21 TTC ATC TTC TTC GTC TTC TTC
9730937 AGC * 7 19/21 AGC AGC AGC AGC AGC TGA AGC
9736001 CAG * 7 19/21 CAG CAA CAG CAG CAG CAG CCG
9809218 CTT * 7 19/21 CTT TTT CTT CTT CTT CTT ATT
9809838 AGA * 7 20/21 AGA AGA AGA AGA AGA AGA TGA
9842069 CAC * 7 19/21 CAC CAC CTC CAC CGC CAC CAC
9848116 CCA * 7 20/21 CCA CCA CCA CCA CCG CCA CCA
9896919 TCA * 7 20/21 TCA TCA TCA TCA TCA TCA TCC
9903328 GCA * 7 19/21 GCA GCG GCA GCA GCA GCA GCC
9953533 GAA * 7 19/21 GAA GAG GAA GAA GAG GAA GAA
10006364 CAC * 7 19/21 CAC CTC CGC CAC CAC CAC CAC
10131987 CCA * 8 22/24 CCA TCA CCA CCA CCA CCA CCA CCT
10147574 CGG * 7 19/21 CGG CGG CGG TGG CGG TGG CGG
10151109 GCT * 8 22/24 GCT CCT GCT GCT GCT GCT GCT GCA
10168995 AGA * 7 19/21 AGA AGA AGA AGA AGA AAA ATA
10174961 CTT * 8 22/24 CTT CTT CTT CTT CTT CTT CGT CAT
10308492 TCT * 7 19/21 TCT TCT TCA GCT TCT TCT TCT
10309874 CTT * 7 19/21 CTT CTT CTT CTT CTT CTC CTC
10327358 AGA * 7 19/21 AGA AGA AGG AGG AGA AGA AGA
10364115 CAT * 9 25/27 CAT CAT CAT CAT CAT CAT CAT CAT ATT
10367780 GTA * 7 20/21 GTA GTA GTT GTA GTA GTA GTA
10423959 CGT * 8 24/24 CGT CGT CGT CGT CGT CGT CGT CGT
10441976 GGC * 10 27/30 GGC GGC GGC TGC GGC GGC GGC GGC AGC AGC
10463299 AGA * 7 19/21 AGA AGA AGG AGG AGA AGA AGA
10500054 CAT * 9 25/27 CAT CAT CAT CAT CAT CAT CAT CAT ATT
10503719 GTA * 7 20/21 GTA GTA GTT GTA GTA GTA GTA
10559898 CGT * 8 24/24 CGT CGT CGT CGT CGT CGT CGT CGT
10577915 GGC * 10 27/30 GGC GGC GGC TGC GGC GGC GGC GGC AGC AGC
10589145 TAT * 18 49/54 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TGT TGT TGT TAT ATT
10593113 GGA * 7 19/21 GGA GGA CGG GGA GGA GGA GGA
10633810 GTC * 7 19/21 GTC GTC GTC TTC GTC GTC GTT
10650547 GGT * 10 27/30 GGT GGT GGT GGT GGC GGT GGC GGT GGT GGC
10651863 GGC * 7 19/21 GGC GGC GGC GGC GGC GGT GGT
10655544 TGC * 7 19/21 TGC TGC TGC TGG AGC TGC TGC
10726404 TGT * 7 19/21 TGT TGT TGT TGT TGT GGT TGG
10756368 ACC * 8 24/24 ACC ACC ACC ACC ACC ACC ACC ACC
10792203 GGA * 7 20/21 GGA GGA GGA GGA GGA GGA AGA
10801717 CAA * 7 19/21 CAA CAA CAG CAA CAG CAA CAA
10802401 CAG * 7 19/21 CAG CAA CAA CAG CAG CAG CAG
10812666 TCT * 7 20/21 TCT TCT TTT TCT TCT TCT TCT
10842537 CTT * 7 19/21 CTT CTT CTT CTT CTT TTT CAT
10856731 CAG * 9 25/27 CAG CAG CAG CAG CAG CAG CAG AAT CAG
10856917 CAG * 7 19/21 CAG CAG CAG CAG CAG CAG ATG
10856956 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CAA
10858343 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAG CTC
10858411 GCA * 7 19/21 GCA GCA ACA TCA GCA GCA GCA
10931289 ATC * 7 19/21 ATC TTC ATC ATC ATC ATC TTC
10932439 TCA * 7 19/21 TCA CTA TCA TCA TCA TCA TCA
10971695 GGA * 7 20/21 GGA GGA GGA GGA GGA GGA AGA
10977493 TTG * 7 20/21 TTG TTG TTG TTG TTG CTG TTG
10988838 AGA * 7 20/21 AGA AGA AGA AGA AAA AGA AGA
10999094 GCT * 8 22/24 GCT GCT GTT GCT GCT GCT GCT GTT
10999788 TTG * 7 19/21 TTG TTG CTG TTG CTG TTG TTG
11025330 CTT * 7 19/21 CTT CTT CTT CTT CTT TTT CAT
11039525 CAG * 9 25/27 CAG CAG CAG CAG CAG CAG CAG AAT CAG
11039711 CAG * 7 19/21 CAG CAG CAG CAG CAG CAG ATG
11039750 CAG * 7 19/21 CAG CAG CAG CAG CAG CAA CAA
11041137 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAG CTC
11041205 GCA * 7 19/21 GCA GCA ACA TCA GCA GCA GCA
11114616 ATC * 7 19/21 ATC TTC ATC ATC ATC ATC TTC
11115766 TCA * 7 19/21 TCA CTA TCA TCA TCA TCA TCA
11150218 GCG * 9 25/27 GCG GTG GCG GTG GCG GCG GCG GCG GCG
11197273 AAT * 7 21/21 AAT AAT AAT AAT AAT AAT AAT
11262082 ACG * 8 22/24 ACG ACG ACG ACA ACG ACA ACG ACG
11262962 ACG * 7 19/21 ACG GCA ACG ACG ACG ACG ACG
11300421 ACG * 8 22/24 ACG ACG ACG ACA ACG ACA ACG ACG
11301301 ACG * 7 19/21 ACG GCA ACG ACG ACG ACG ACG
11400693 AAT * 7 19/21 AAT AAT AAT AAT AAT AAT GTT
11415627 ATA * 8 22/24 ATA ATA ATA ATA ATA ATA ATA AGG
11448047 TAA * 10 28/30 TAA TAA TAA TAA TAA TAA TAG TGA TAA TAA
11455712 AGC * 7 19/21 AGC AGC AGC AAC AGC ATC AGC
11506995 TGG * 7 19/21 TGG TGA TGG TGG CGG TGG TGG
11507219 TGG * 7 19/21 TGG TGA TGG TGG TGA TGG TGG
11524214 CTT * 7 19/21 CTT CTT CTT CGT CAT CTT CTT
11537892 ACT * 7 19/21 ACT ACT ACT ACT ACT ACC AGT
11637550 TCT * 8 22/24 TCT TCT TCT TCT TCT TTT CCT TCT
11638892 TAT * 7 19/21 TAT TAT TAT GAT TAT TAT TCT
11661078 ATA * 8 22/24 ATA ATA ATA ATA ATA ATA ATA TTT
11664134 ATA * 7 20/21 ATA ATA ATA ATA ATA ATA GTA
11710820 CTT * 7 19/21 CTT CTT CTT TTT CTT CTT TTT
11803261 ATT * 7 19/21 ATT ATT ATT ATT ATT AAT ATA
11849477 TAA * 7 19/21 TAA TAA TAC TCA TAA TAA TAA
11883489 TTA * 7 19/21 TTA TTA TTA TTA TTA TTA CTG
11911074 TAT * 7 19/21 TAT TAT TAT TAT TAT TAC TTT
11953124 TGA * 14 38/42 TGA TAA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA CGA GAA
11954634 GAT * 14 38/42 GAT GAT GAT GAT GAT GAT AAT GAT GAT GAT GTT GAC GAT GAA
11992735 ATA * 7 20/21 ATA ATA ATA ATA ATA ATA ATC
11997635 ATA * 8 22/24 ATA ATA ATA ATA ATA ATA ATA TAA
12038015 ATA * 7 19/21 ATA ATA ATA ATA ATA ACA ATT
12053734 AAG * 8 22/24 AAG AAG AAA AAG CAG AAG AAG AAG
12076633 TAC * 8 24/24 TAC TAC TAC TAC TAC TAC TAC TAC
12104535 GTG * 8 22/24 GTG GTG GTG GTG GTA GTG GTG GTA
12108222 GCA * 7 19/21 GCA GCA GCA ACA GCA GCA ACA
-----------------------------------------------------------------------------------------
Total sequence length......................... 12114540
Minimum Tri-Nucleotide repeat units........... 7
Total number of repeats detected.............. 369
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 8 8 0 0 0 0 0 0 0 0 0 0 0
AAG 23 21 1 1 0 0 0 0 0 0 0 0 0
AAC 1 1 0 0 0 0 0 0 0 0 0 0 0
ATA 10 10 0 0 0 0 0 0 0 0 0 0 0
ATT 10 9 1 0 0 0 0 0 0 0 0 0 0
ATG 6 6 0 0 0 0 0 0 0 0 0 0 0
ATC 11 11 0 0 0 0 0 0 0 0 0 0 0
AGA 22 20 2 0 0 0 0 0 0 0 0 0 0
AGT 2 2 0 0 0 0 0 0 0 0 0 0 0
AGG 2 2 0 0 0 0 0 0 0 0 0 0 0
AGC 4 4 0 0 0 0 0 0 0 0 0 0 0
ACA 2 2 0 0 0 0 0 0 0 0 0 0 0
ACT 2 2 0 0 0 0 0 0 0 0 0 0 0
ACG 4 4 0 0 0 0 0 0 0 0 0 0 0
ACC 2 2 0 0 0 0 0 0 0 0 0 0 0
TAA 8 6 2 0 0 0 0 0 0 0 0 0 0
TAT 3 2 0 0 1 0 0 0 0 0 0 0 0
TAG 1 1 0 0 0 0 0 0 0 0 0 0 0
TAC 3 3 0 0 0 0 0 0 0 0 0 0 0
TTA 8 7 1 0 0 0 0 0 0 0 0 0 0
TTG 12 11 1 0 0 0 0 0 0 0 0 0 0
TTC 16 15 1 0 0 0 0 0 0 0 0 0 0
TGA 8 6 1 1 0 0 0 0 0 0 0 0 0
TGT 6 6 0 0 0 0 0 0 0 0 0 0 0
TGG 6 5 1 0 0 0 0 0 0 0 0 0 0
TGC 1 1 0 0 0 0 0 0 0 0 0 0 0
TCA 8 8 0 0 0 0 0 0 0 0 0 0 0
TCT 19 18 1 0 0 0 0 0 0 0 0 0 0
TCC 2 2 0 0 0 0 0 0 0 0 0 0 0
GAA 19 17 1 1 0 0 0 0 0 0 0 0 0
GAT 12 11 0 1 0 0 0 0 0 0 0 0 0
GAG 3 3 0 0 0 0 0 0 0 0 0 0 0
GTA 3 2 1 0 0 0 0 0 0 0 0 0 0
GTT 2 2 0 0 0 0 0 0 0 0 0 0 0
GTG 2 2 0 0 0 0 0 0 0 0 0 0 0
GTC 3 3 0 0 0 0 0 0 0 0 0 0 0
GGA 7 7 0 0 0 0 0 0 0 0 0 0 0
GGT 2 1 1 0 0 0 0 0 0 0 0 0 0
GGC 6 4 2 0 0 0 0 0 0 0 0 0 0
GCA 6 6 0 0 0 0 0 0 0 0 0 0 0
GCT 4 4 0 0 0 0 0 0 0 0 0 0 0
GCG 3 3 0 0 0 0 0 0 0 0 0 0 0
CAA 6 6 0 0 0 0 0 0 0 0 0 0 0
CAT 11 11 0 0 0 0 0 0 0 0 0 0 0
CAG 12 12 0 0 0 0 0 0 0 0 0 0 0
CAC 4 4 0 0 0 0 0 0 0 0 0 0 0
CTA 2 2 0 0 0 0 0 0 0 0 0 0 0
CTT 27 26 1 0 0 0 0 0 0 0 0 0 0
CTG 5 4 1 0 0 0 0 0 0 0 0 0 0
CTC 2 2 0 0 0 0 0 0 0 0 0 0 0
CGA 1 1 0 0 0 0 0 0 0 0 0 0 0
CGT 2 2 0 0 0 0 0 0 0 0 0 0 0
CGG 2 2 0 0 0 0 0 0 0 0 0 0 0
CCA 11 10 1 0 0 0 0 0 0 0 0 0 0
CCT 2 2 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
8 AAT + 10 ATA + 8 TAA + 10 ATT + 8 TTA + 3 TAT = 47
23 AAG + 22 AGA + 19 GAA + 27 CTT + 16 TTC + 19 TCT = 126
1 AAC + 2 ACA + 6 CAA + 2 GTT + 12 TTG + 6 TGT = 29
6 ATG + 8 TGA + 12 GAT + 11 CAT + 11 ATC + 8 TCA = 56
2 AGT + 3 GTA + 1 TAG + 2 ACT + 2 CTA + 3 TAC = 13
2 AGG + 7 GGA + 3 GAG + 2 CCT + 2 CTC + 2 TCC = 18
4 AGC + 6 GCA + 12 CAG + 4 GCT + 5 CTG + 1 TGC = 32
4 ACG + 1 CGA + 0 GAC + 2 CGT + 3 GTC + 0 TCG = 10
2 ACC + 11 CCA + 4 CAC + 2 GGT + 2 GTG + 6 TGG = 27
6 GGC + 3 GCG + 2 CGG + 0 GCC + 0 CCG + 0 CGC = 11
-----------------------------------------------------------------------------------------
-----------------------------------------------------------------------------------------
Tri-nucleotide repeats in C. elegans Chromosome-III complete sequence
Minimum tri-nucleotide repeating units = 7 (allowing 10% mismatch)
Total 1 sequences searched with a total of 12114540 bp length
Total 369 repeats covering 7702 / 8397 base pairs
Length distribution of all tri-nucleotide repeats
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
no. of repeat-units 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 >=40
total repeats 251 79 14 13 4 3 0 4 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Length distribution of all tri-nucleotide repeats
No. of repeat units> 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
total repeats--> 344 20 4 1 0 0 0 0 0 0 0 0
AAT 8 0 0 0 0 0 0 0 0 0 0 0
AAG 21 1 1 0 0 0 0 0 0 0 0 0
AAC 1 0 0 0 0 0 0 0 0 0 0 0
ATA 10 0 0 0 0 0 0 0 0 0 0 0
ATT 9 1 0 0 0 0 0 0 0 0 0 0
ATG 6 0 0 0 0 0 0 0 0 0 0 0
ATC 11 0 0 0 0 0 0 0 0 0 0 0
AGA 20 2 0 0 0 0 0 0 0 0 0 0
AGT 2 0 0 0 0 0 0 0 0 0 0 0
AGG 2 0 0 0 0 0 0 0 0 0 0 0
AGC 4 0 0 0 0 0 0 0 0 0 0 0
ACA 2 0 0 0 0 0 0 0 0 0 0 0
ACT 2 0 0 0 0 0 0 0 0 0 0 0
ACG 4 0 0 0 0 0 0 0 0 0 0 0
ACC 2 0 0 0 0 0 0 0 0 0 0 0
TAA 6 2 0 0 0 0 0 0 0 0 0 0
TAT 2 0 0 1 0 0 0 0 0 0 0 0
TAG 1 0 0 0 0 0 0 0 0 0 0 0
TAC 3 0 0 0 0 0 0 0 0 0 0 0
TTA 7 1 0 0 0 0 0 0 0 0 0 0
TTG 11 1 0 0 0 0 0 0 0 0 0 0
TTC 15 1 0 0 0 0 0 0 0 0 0 0
TGA 6 1 1 0 0 0 0 0 0 0 0 0
TGT 6 0 0 0 0 0 0 0 0 0 0 0
TGG 5 1 0 0 0 0 0 0 0 0 0 0
TGC 1 0 0 0 0 0 0 0 0 0 0 0
TCA 8 0 0 0 0 0 0 0 0 0 0 0
TCT 18 1 0 0 0 0 0 0 0 0 0 0
TCC 2 0 0 0 0 0 0 0 0 0 0 0
GAA 17 1 1 0 0 0 0 0 0 0 0 0
GAT 11 0 1 0 0 0 0 0 0 0 0 0
GAG 3 0 0 0 0 0 0 0 0 0 0 0
GTA 2 1 0 0 0 0 0 0 0 0 0 0
GTT 2 0 0 0 0 0 0 0 0 0 0 0
GTG 2 0 0 0 0 0 0 0 0 0 0 0
GTC 3 0 0 0 0 0 0 0 0 0 0 0
GGA 7 0 0 0 0 0 0 0 0 0 0 0
GGT 1 1 0 0 0 0 0 0 0 0 0 0
GGC 4 2 0 0 0 0 0 0 0 0 0 0
GCA 6 0 0 0 0 0 0 0 0 0 0 0
GCT 4 0 0 0 0 0 0 0 0 0 0 0
GCG 3 0 0 0 0 0 0 0 0 0 0 0
CAA 6 0 0 0 0 0 0 0 0 0 0 0
CAT 11 0 0 0 0 0 0 0 0 0 0 0
CAG 12 0 0 0 0 0 0 0 0 0 0 0
CAC 4 0 0 0 0 0 0 0 0 0 0 0
CTA 2 0 0 0 0 0 0 0 0 0 0 0
CTT 26 1 0 0 0 0 0 0 0 0 0 0
CTG 4 1 0 0 0 0 0 0 0 0 0 0
CTC 2 0 0 0 0 0 0 0 0 0 0 0
CGA 1 0 0 0 0 0 0 0 0 0 0 0
CGT 2 0 0 0 0 0 0 0 0 0 0 0
CGG 2 0 0 0 0 0 0 0 0 0 0 0
CCA 10 1 0 0 0 0 0 0 0 0 0 0
CCT 2 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes in all sequences
8 AAT + 10 ATA + 8 TAA + 10 ATT + 8 TTA + 3 TAT = 47
23 AAG + 22 AGA + 19 GAA + 27 CTT + 16 TTC + 19 TCT = 126
1 AAC + 2 ACA + 6 CAA + 2 GTT + 12 TTG + 6 TGT = 29
6 ATG + 8 TGA + 12 GAT + 11 CAT + 11 ATC + 8 TCA = 56
2 AGT + 3 GTA + 1 TAG + 2 ACT + 2 CTA + 3 TAC = 13
2 AGG + 7 GGA + 3 GAG + 2 CCT + 2 CTC + 2 TCC = 18
4 AGC + 6 GCA + 12 CAG + 4 GCT + 5 CTG + 1 TGC = 32
4 ACG + 1 CGA + 0 GAC + 2 CGT + 3 GTC + 0 TCG = 10
2 ACC + 11 CCA + 4 CAC + 2 GGT + 2 GTG + 6 TGG = 27
6 GGC + 3 GCG + 2 CGG + 0 GCC + 0 CCG + 0 CGC = 11
-----------------------------------------------------------------------------------------
Frequency distribution of repeats longer than 40 bp
0 AAT + 0 ATA + 0 TAA + 0 ATT + 0 TTA + 1 TAT = 1
1 AAG + 0 AGA + 1 GAA + 0 CTT + 0 TTC + 0 TCT = 2
0 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 0
0 ATG + 1 TGA + 1 GAT + 0 CAT + 0 ATC + 0 TCA = 2
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 0 TCC = 0
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 0
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Sequence-wise distribution of tri-nucleotide repeats
-----------------------------------------------------------------------------------------
Total Repeats-longer Sequence Number
Repeats than 40 bp 1
-------------------------------------------
AAT 8 0 8
AAG 23 1 23
AAC 1 0 1
ATA 10 0 10
ATT 10 0 10
ATG 6 0 6
ATC 11 0 11
AGA 22 0 22
AGT 2 0 2
AGG 2 0 2
AGC 4 0 4
ACA 2 0 2
ACT 2 0 2
ACG 4 0 4
ACC 2 0 2
TAA 8 0 8
TAT 3 1 3
TAG 1 0 1
TAC 3 0 3
TTA 8 0 8
TTG 12 0 12
TTC 16 0 16
TGA 8 1 8
TGT 6 0 6
TGG 6 0 6
TGC 1 0 1
TCA 8 0 8
TCT 19 0 19
TCC 2 0 2
GAA 19 1 19
GAT 12 1 12
GAG 3 0 3
GTA 3 0 3
GTT 2 0 2
GTG 2 0 2
GTC 3 0 3
GGA 7 0 7
GGT 2 0 2
GGC 6 0 6
GCA 6 0 6
GCT 4 0 4
GCG 3 0 3
CAA 6 0 6
CAT 11 0 11
CAG 12 0 12
CAC 4 0 4
CTA 2 0 2
CTT 27 0 27
CTG 5 0 5
CTC 2 0 2
CGA 1 0 1
CGT 2 0 2
CGG 2 0 2
CCA 11 0 11
CCT 2 0 2
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369 5
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© Division of Biochemical Sciences, National Chemical Laboratory, Pune 411008, INDIA