Di-Nucleotide Repeats in Genomic Sequences
Di-Nucleotide Repeats in
C. elegans Chromosome-III complete sequence
Genomic Sequence:..
lcl|chr_III
Position Repeat Coverage Repeat
188123 TA * 10 18/20 TA AA TG TA TA TA TA TA TA TA
227793 GA * 40 72/80 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GT GA GA GA GA GA GA GT GG TT AC GG
257898 GA * 12 22/24 GA AA GA CA GA GA GA GA GA GA GA GA
266987 CT * 11 20/22 CT CT CT CT CT CT CT CT CT AT TT
389067 AC * 13 25/26 AC TC AC AC AC AC AC AC AC AC AC AC AC
389203 TG * 10 18/20 TG CG TG TG TG TG TG TG TG CG
531178 TC * 11 20/22 TC TC TC CA TC TC TC TC TC TC TC
533997 AG * 12 22/24 AG AA AA AG AG AG AG AG AG AG AG AG
534181 CA * 10 18/20 CA CA CC CA CA CA CA TA CA CA
577748 AT * 18 33/36 AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT AG CT
589809 TC * 10 18/20 TC TC TC CC TC TC TT TC TC TC
607466 TC * 17 32/34 TC TT TC TC TC TC TC TC TC TC TC TC TC TC TC TC TA
612561 GA * 10 18/20 GA GA GA GA GA GA GA GA GA TG
622595 TC * 12 22/24 TC TC TC TC TC TC TC TC TC TC TC AT
750863 AG * 16 30/32 AG AG AG AG AG AG AG AG AG AG AG AG GG AG AG AC
751966 AC * 18 33/36 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC GT AC AA
875924 TA * 11 20/22 TA TA TG TA TA TG TA TA TA TA TA
1034644 TA * 12 22/24 TA TA TG TA TA TA TA TG TA TA TA TA
1046946 TA * 15 27/30 TA TA TA TA TA TA TA TA TA TA TA TA TA GG TT
1048363 TA * 10 18/20 TA TA TA TA TA TA TA TG TA CA
1074084 TA * 10 18/20 TA TA TG TG TA TA TA TA TA TA
1085150 AC * 25 45/50 AC AC AC AC AC AC AT AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC GA GG
1290769 GA * 10 19/20 GA GA TA GA GA GA GA GA GA GA
1292949 GC * 10 18/20 GC GC GC GC GC GC GC GA GC GA
1324573 AG * 10 18/20 AG AG AG AG AG AG AG AC TG AG
1324673 GT * 10 19/20 GT GT GT GT GT GT GT GT GT GA
1324703 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA GA GA
1324835 GA * 11 20/22 GA GA GA GA GA GA GA GA GG GA GC
1463921 TA * 11 20/22 TA TA TA TA TA TA TA TA TA TT TT
1473006 TA * 40 72/80 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TC TA TA TA TA TA TA TA TT TA TA TA AA TA TA TA TA TA CA GA TA AT
1487399 TA * 11 20/22 TA TA TA TA TA TA TA TA TA TC TT
1675180 GT * 11 20/22 GT GT GT GT GT TT GT GT GT AT GT
1675360 GT * 11 21/22 GT GT GT GT GT GT GT GT GT GT GC
1681121 AC * 12 22/24 AC AA AT AC AC AC AC AC AC AC AC AC
1686058 CT * 18 33/36 CT CT CT CT CT CT TA CT CT CT CT CT CT CT CT CT CT GT
1763621 TG * 11 20/22 TG TG TG TG TG TG TG TT TG TA TG
1767747 GA * 10 18/20 GA GA GT GA GA GA GT GA GA GA
1767842 AG * 11 20/22 AG TG AG AG AG AG AG AG AG AG TG
1776633 TA * 10 18/20 TA TA TG TA TA CA TA TA TA TA
1816599 TG * 43 79/86 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG GT GG GG AG AA
1931787 GA * 32 58/64 GA CG GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA TG AG
1938641 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TT TT
1976330 TC * 14 26/28 TC TC TC TC TC TC TC TC TC TC TC TC TG GC
1976365 AG * 17 31/34 AG AG AG AG AG GG AG AG AG AG AG AG AG AG AG AG TA
1976492 CT * 12 23/24 CT CT CT CT CT CT CT CT CT TT CT CT
1976595 AG * 27 49/54 AG AG GG AA AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG GG GA
1977921 GA * 12 22/24 GA CA GA GA GA GA GA GA GA GA GA AA
1977986 TC * 10 18/20 TC TC TC TC TC TC TC TC AC GC
2010946 CT * 13 24/26 CT CT CT CT CT CT CT CT CT CT CT CT GC
2047927 TA * 10 18/20 TA TA TA TA TA TA TA TA TA CC
2085253 TC * 10 18/20 TC TC TC TC AC TC TC TC CC TC
2134741 AT * 11 21/22 AT AT AT AT AT AT AT AT AT AT AA
2157732 TA * 10 18/20 TA TA TA TA TA TA TA TA TC TT
2208926 TC * 13 25/26 TC TC TC TC TC TC TC TC TC TC TC TC TT
2291891 AT * 16 29/32 AT TT AT AT AT AT AT AT AT AT AT AT AT TT AT TT
2325422 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TC AG
2340098 AT * 11 20/22 AT GT TT AT AT AT AT AT AT AT AT
2360244 TC * 51 92/102 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TT CT CG TA AG TG TA
2366856 TC * 10 18/20 TC TC TC TC TC TC TC CC AC TC
2399252 TC * 22 40/44 TC TC TG TC TC CC TC TC TC TC TC TC TC TC TC TC TG TC TC TC TC TG
2400183 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TC TC
2400273 CA * 11 20/22 CA CC CA CA CA CA CA CA TA CA CA
2413048 CA * 11 21/22 CA CA GA CA CA CA CA CA CA CA CA
2415054 AG * 11 20/22 AG AT AG AT AG AG AG AG AG AG AG
2429094 CT * 14 26/28 CT TT CT CT CT CT CT CT CT CT CT CT CT CC
2430621 TC * 10 18/20 TC TC TT TC TC TC TC TC TC TT
2431011 AG * 11 20/22 AG AG AG AG AG AG AG AG AG AC AA
2460850 AG * 12 22/24 AG AG AG AG AG AG AG GA AG AG AG AG
2466174 AG * 10 19/20 AG AG AG AG AG AG AG AG AG TG
2476674 GA * 13 24/26 GA GA GA TC GA GA GA GA GA GA GA GA GA
2578184 AT * 27 49/54 AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT CA GA
2579925 AG * 11 20/22 AG AG AG AG AG AG AA AT AG AG AG
2580162 TC * 20 36/40 TC TC TC TC TC TC TT TC TC TC TC TC TC TC TC TC TC TC TA GT
2592723 TC * 23 42/46 TC AC CC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC CA
2692224 CT * 12 22/24 CT AT TT CT CT CT CT CT CT CT CT CT
2762543 GT * 10 18/20 GT AT GT AT GT GT GT GT GT GT
2777668 GA * 10 18/20 GA GA GG GG GA GA GA GA GA GA
2785757 GA * 11 20/22 GA GA GA GA GA GA GA GA GA GA AG
2828596 AG * 10 18/20 AG AG AA AG TG AG AG AG AG AG
2893346 TC * 10 18/20 TC TA TC TT TC TC TC TC TC TC
2911199 CT * 12 22/24 CT CT TT CC CT CT CT CT CT CT CT CT
2924303 CA * 12 23/24 CA CA TA CA CA CA CA CA CA CA CA CA
2939771 TC * 12 22/24 TC TC TC TT TC TC TG TC TC TC TC TC
3063368 AG * 10 19/20 AG AG AG AG AG AG AG AG AG AA
3070157 AG * 15 27/30 AG AG AT AG AG AG GG AG AG AG AG AG AG AG AC
3151892 GA * 10 18/20 GA GA GA GA GA GA GG GA TA GA
3153378 GA * 10 18/20 GA TC GA GA GA GA GA GA GA GA
3172678 TA * 21 38/42 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA CA AA AA TA CA
3183810 TC * 13 24/26 TC TC TC TC TC TC TC TC TC TG TT TC TC
3183924 CT * 10 18/20 CT CA CT CT CT CT TT CT CT CT
3187348 TC * 32 58/64 TC CC TC TC TC TT TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TG CC GA
3243977 GA * 10 19/20 GA GA GA GA GA GA GA GA GA CA
3250111 CT * 16 29/32 CT CT CT CT AC CT CT CT CT CT CT CT CT CT CT AT
3250180 AG * 14 26/28 AG AC AG AG AG AG AG AG AG AG AG AG AG AT
3318065 CT * 36 65/72 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CG GT TC CC GC
3419611 CA * 54 98/108 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA TT AT TT TC AG
3460251 TC * 10 19/20 TC TA TC TC TC TC TC TC TC TC
3557803 TA * 12 22/24 TA TA TA TA AA TA TA TA TA AA TA TA
3565344 TA * 12 22/24 TA AT TA TA TA TA TA TA TA TA TA TA
3590552 AT * 10 18/20 AT AT TT AT AT AC AT AT AT AT
3596106 TA * 11 20/22 TA TA AA TA TA TA TA TA TA TA TG
3737829 TC * 10 18/20 TC TC TC TC TC TC TC TC CC TT
3900750 TC * 12 22/24 TC TC TC TA TT TC TC TC TC TC TC TC
3912007 AG * 10 18/20 AG AG AG AG TG AG AG AG AA AG
3917234 CT * 10 19/20 CT CT TT CT CT CT CT CT CT CT
3920538 CT * 10 19/20 CT CT CT TT CT CT CT CT CT CT
3922257 GA * 18 33/36 GA AA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GT GG
4003013 AG * 13 24/26 AG AA AC AG AG AG AG AG AG AG AG AG AG
4003140 GA * 12 22/24 GA TA GA GA TA GA GA GA GA GA GA GA
4024952 CT * 10 18/20 CT CT CT CT CT CT CT CT CC GT
4102546 TC * 10 18/20 TC TC TC TC TC TC TC TC TT TT
4119024 TC * 11 20/22 TC TT TC TC TC TC TC TA TC TC TC
4301050 TA * 13 24/26 TA AA TA TA TA TA TA TA TA TA TA TA TT
4302002 CT * 10 18/20 CT CT CT CT CT CT CT TT CT CA
4322748 TC * 10 18/20 TC TC TC TC TC TC TC TT TC TA
4366296 CA * 10 18/20 CA CA CA CA AA CA CA CA CA TA
4383118 CA * 12 22/24 CA CA CA CA CA CA CA CA CA TA CA TA
4394590 TC * 10 18/20 TC TC TC TC TC TC TC TA TC TG
4428590 CA * 10 18/20 CA CA CA TA CA CA CA CA CA CC
4428815 AC * 10 18/20 AC AC AC AC AC AC AC AT AC AA
4440493 TC * 13 24/26 TC TC TC TC TT TC TC TT TC TC TC TC TC
4440569 CA * 10 18/20 CA CA CA CA CA TA CA CT CA CA
4466566 TC * 12 22/24 TC TC TC TC TC TC TC TC TC TC TC AG
4467199 TC * 10 18/20 TC TA TC TC TA TC TC TC TC TC
4468707 CT * 10 18/20 CT CT CT CT CT GT GT CT CT CT
4468850 TC * 12 22/24 TC TC TG TA TC TC TC TC TC TC TC TC
4555721 AG * 53 96/106 AG AA AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG GA AG AG AT GA GG AG AC GT
4561173 AC * 15 27/30 AC AC AC AC AC AC AC AC AC AC AC AC AC AA GT
4561362 AG * 10 18/20 AG AG AG AG AG AG AG GG AG AA
4569563 AG * 10 18/20 AG AG AG AG AG AA AG AG AG AA
4627758 CT * 31 56/62 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT AT TT TT CT CC GA
4648341 AG * 13 24/26 AG AT AG AG AG AG AG AT AG AG AG AG AG
4652979 AG * 10 18/20 AG AG AG AG AG AG AG AG AG TT
4656902 AG * 11 20/22 AG AG AG AG AG AA AG AG AA AG AG
4729119 GA * 10 18/20 GA TA GA GA GA GA GA GA GA AA
4764327 AG * 13 24/26 AG AC AG AG AG AC AG AG AG AG AG AG AG
4796889 CA * 11 20/22 CA CA CA CA CA CA CA CA GA GA CA
4798728 AG * 28 51/56 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG TC TG AG CA
4811285 AT * 12 22/24 AT AT AC AT AT AT AT AT AT AT AT GT
4869107 AT * 28 51/56 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT CA TT CA
4873106 GT * 10 18/20 GT GT GT AT GT GT GT GT GT GC
4888918 GT * 10 18/20 GT GT GT GT GT GT GT GT GT CG
4891294 GA * 10 18/20 GA CA GA GA GA GA GA GA GA GT
4946449 GT *101 183/202 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GC GT GT GT GT AT GT GT GT GG AG AA GC AT AA GA GA GA AA AG GG
4954744 CT * 28 51/56 CT CT CT CT CT CT CC CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CC TT GT CC CT CT
4971137 GA * 10 18/20 GA TA GA GA GA GA GA GA GG GA
5101746 AG * 11 20/22 AG AG AG AG AG AG CG AG CG AG AG
5120192 TC * 10 18/20 TC TA TC TC TC TT TC TC TC TC
5173341 GA * 11 20/22 GA TA GA GT GA GA GA GA GA GA GA
5491618 TA * 12 22/24 TA TA TA TA TA TA TA TA TA TA TA CT
5491667 TA * 10 19/20 TA TA TA TA TA TA TA TA TA CA
5785527 AG * 43 78/86 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG NG AG AG AG AG AG AG AG AG AG AN AN AN NN NN
5785625 GA * 27 49/54 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GT TT CA GC
5827727 CT * 10 18/20 CT CT CT CT CT CT CT CT GT CA
5827930 TG * 65 117/130 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG CC AT CA TT AA AC AA
5848011 AG * 10 18/20 AG AG AG AG AG AG AG AG AT AC
5934391 CA * 25 45/50 CA CA CA CA CA CA CA CA CA CA CA TA CA CA CA CA CA CA TA CA CA CA CA AA TG
6019143 TC * 10 18/20 TC TC TC TC TC TC TT TC TC TT
6193594 TG * 13 24/26 TG TG CG TG TG TG TG TG TG TG TG TG AG
6306546 GA * 13 24/26 GA GA GA GA GA GA GA GA GA GA GA GC AA
6388581 AT * 16 30/32 AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT GT
6447453 AT * 13 24/26 AT AT AT GT AT AT AT AT AT AT AT AA AT
6520971 TA * 12 22/24 TA CA TA TA TA TA TA TA TA TA TA TT
6543756 CT * 10 18/20 CT CT CT CT CT CT CT CG TT CT
6543860 CT * 10 18/20 CT CT CT TT CT CT CT TT CT CT
6545972 CT * 10 18/20 CT CT TT CT CT CT CT CT CT CA
6548630 TC * 18 33/36 TC TC TC TT TC TC TC TC TC TC TC TC TC TC TT TC TC TT
6550745 AT * 13 24/26 AT AT GT AT AT AT AT AC AT AT AT AT AT
6849806 TA * 10 19/20 TA TA TA TA TA TA TA TA TA TG
6944551 TC * 11 21/22 TC TC TC TC TC TC TC TC TC TT TC
6947100 AC * 12 22/24 AC AC AC AC AC AC TC AC AC AC AC AT
7011552 TA * 12 22/24 TA TA CA TA TA TA TA TA AA TA TA TA
7174917 AT * 10 18/20 AT CG AT AT AT AT AT AT AT AT
7237433 AC * 11 20/22 AC AC AC TC AC TC AC AC AC AC AC
7237599 AC * 21 38/42 AC AC AC AC AC AC AC AC AC AC AC AC TC AC AC AC TC AC AC AC GA
7277989 TA * 12 22/24 TA TA TA TA TA TA TA TG TT TA TA TA
7283274 AT * 14 26/28 AT AT AT AT AT AT AT AT AT AT AT AT TT GT
7291489 AT * 11 21/22 AT AT AT AT AT AT AT AT AT AT TT
7303353 TA * 22 40/44 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT AT TA AA TA
7320068 TC * 10 18/20 TC TC CA TC TC TC TC TC TC TC
7320837 GA * 12 22/24 GA GA GA GA GA GA GA GA GA GA GA AC
7323656 TC * 10 19/20 TC TC TC TC TC TC TC TC TC TT
7330312 GA * 10 19/20 GA GA GA GA GA GA GA AA GA GA
7334806 AG * 41 74/82 AG AA AG AG AG AG AG AA AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AT AG AG AG AG AA AG TG CC AT
7395659 TC * 10 18/20 TC CC TC TC TC TC TC TC TC TT
7483422 TC * 10 18/20 TC TC TC TC TC TG TC CC TC TC
7487731 AG * 10 18/20 AG AG AG AG AA AG AG AG GG AG
7540029 TC * 10 18/20 TC CC TC TC TC TC TC TC TC TG
7592669 TC * 10 19/20 TC TC TC TC TC TC TC TC TC TT
7612601 AG * 21 38/42 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AC AT TC
7617670 GA * 16 29/32 GA GA GA GA GA TA GA GA GA GA GA GA GA AA GA CA
7621812 CA * 11 20/22 CA CA GG CA CA CA CA CA CA CA CA
7633845 CT * 10 18/20 CT CT CT CT CT CT CT CT AT TT
7671990 AT * 13 25/26 AT AT AT AT AT AT AT AT AT AT AT AT TT
7694554 TG * 11 20/22 TG TG TG TG TG TG TG TG TG AG AG
7802256 AG * 17 31/34 AG AG AG AG AG AG GG AG AG AG AG AG AG AG TC AG AG
7802494 TC * 13 24/26 TC TC TC TT TC TC TC TC TC TC TC TC TA
7886466 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AT CA
7953914 TG * 10 19/20 TG TG TG TG TG TG TG TG TG AG
8058565 AG * 13 24/26 AG AG GG AA AG AG AG AG AG AG AG AG AG
8075189 TG * 10 18/20 TG CA TG TG TG TG TG TG TG TG
8116704 CT * 10 18/20 CT CT CT TG CT CT CT CT CT CT
8166362 CA * 12 22/24 CA CT CA CA CA CA CA TA CA CA CA CA
8174449 TG * 10 18/20 TG TG TG TT TG TA TG TG TG TG
8178708 AG * 10 18/20 AG AG GG AG AG AG AG AG AT AG
8253545 TA * 10 18/20 TA CT TA TA TA TA TA TA TA TA
8413499 AT * 12 22/24 AT TT AT AA AT AT AT AT AT AT AT AT
8438131 AC * 11 20/22 AC AC CA AC AC AC AC AC AC AC AC
8439572 TG * 12 22/24 TG TG AG TG TG TG TG TG TG AG TG TG
8442853 TA * 10 18/20 TA TA TA TA TA TA TA TA TC CA
8455168 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AT TG
8458137 GA * 53 96/106 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA TG TG TG GA AG AA AA
8463869 GT * 11 20/22 GT GT GT GT GT GT GT GT GT TC GT
8522684 TG * 10 18/20 TG TT TG TG TG TA TG TG TG TG
8620718 AG * 12 22/24 AG AG AG AG AG AG AG AG AG GG AG AA
8653040 TA * 13 24/26 TA TT CA TA TA TA TA TA TA TA TA TA TA
8694013 AC * 12 23/24 AC AC TC AC AC AC AC AC AC AC AC AC
8706330 AT * 13 24/26 AT AT AT AT AT AT AT AT AT AT AT AT GA
8726823 AG * 10 18/20 AG CA AG AG AG AG AG AG AG AG
8727893 AG * 13 25/26 AG AG AG AG AG AG AG AG AG AG AG AG AA
8785790 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT TT GC
8788616 TC * 12 22/24 TC TC TC TC TC TC TC CC TC TC TC TT
8836955 GA * 10 18/20 GA GA GA GA GA GA GA GA GA TG
8953234 CT * 46 83/92 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CA TA CC AC TA CC
8956877 CA * 10 18/20 CA CA CA CA CA CA TA CA TA CA
8994152 AT * 12 22/24 AT AT AT AT AT AT AA NT AT AT AT AT
9035635 AG * 11 20/22 AG AG AG AG AG AG AG AG TG AT AG
9046484 CA * 10 19/20 CA CA CA CA CA CA CA CA CA AA
9046843 AT * 10 18/20 AT AT AT AT AT AA GT AT AT AT
9047293 AT * 10 18/20 AT AT AC AT AT AT AT AT AT AA
9090187 GA * 11 20/22 GA AA GA GA GA GA GA GA GA GA GC
9160551 GA * 11 20/22 GA AA GA GA GA GA GA GA GA GA GC
9240407 AG * 11 20/22 AG AG AG AG AG AG AG AG TG AT AG
9250650 CA * 10 19/20 CA CA CA CA CA CA CA CA CA AA
9251009 AT * 10 18/20 AT AT AT AT AT AA GT AT AT AT
9251459 AT * 10 18/20 AT AT AC AT AT AT AT AT AT AA
9337512 AC * 10 18/20 AC AC AC AC AC AC AC AC AA AA
9349644 CT * 13 24/26 CT CC CT CC CT CT CT CT CT CT CT CT CT
9353305 TC * 10 18/20 TC AC TC TC TC TC TA TC TC TC
9355088 TA * 11 21/22 TA TA TA TA TA TA TA TA TA TA AA
9355110 AT * 28 51/56 AT AT AT AT AT AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT TT AT TC AT TT AT
9388162 TA * 10 18/20 TA TA TA TA TA TA TT TA AA TA
9461771 TG * 12 22/24 TG TG TG TC TG TG TG TG TG TG TG GG
9488414 TG * 10 19/20 TG TG TG TG TG TG TG TG TG TA
9498646 AG * 10 19/20 AG AG AG AG AG TG AG AG AG AG
9513919 TA * 13 24/26 TA TA TA TA TA TA TA TA TA TA TA TT AA
9521783 AT * 17 31/34 AT AT AT AT AT AT AT AT AT AT AT TT AT TT AT TT AT
9603020 TG * 10 18/20 TG TG AG TG TG TG TG TG GG TG
9605261 GA * 10 18/20 GA GA GA AT GA GA GA GA GA GA
9607251 GT * 10 18/20 GT GT GT GT GT GT GT GT GC CT
9613172 AC * 11 20/22 AC AC AC AC AC AC AC AT AC AA AC
9633572 CT * 10 18/20 CT CT CT CT CT CT CT CT CT TC
9642601 GT * 23 42/46 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT CC CC
9644569 AG * 12 22/24 AG AG AG AG AG AG AG AG AG AG AG TA
9651789 AT * 11 21/22 AT AT AT GT AT AT AT AT AT AT AT
9710317 TG * 10 18/20 TG TG TG TG TG TG TG TG TG CT
9712450 TC * 10 18/20 TC TC TC TC TC TC TC TC TC AA
9732323 AG * 18 33/36 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AT TA
9809144 TC * 10 18/20 TC TC TC TC TC TC TC TC TG TG
9810212 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG AT
9833572 TA * 10 18/20 TA TA TA TA TA TA TA TA TA CT
9886926 CT * 11 20/22 CT CT CT CC CT CT CT TT CT CT CT
10012847 TG * 11 20/22 TG TG TG TG TG TG TA TC TG TG TG
10014181 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AC GT
10024354 CT * 10 19/20 CT CT CT CT CT CT CT CT TT CT
10028231 TC * 18 33/36 TC TC TA TC TC TC TC GC TC TC TC TC TC TC TC TC TC CC
10028529 CT * 10 18/20 CT CT CT CT CT CT CT GT CT AT
10100872 TA * 10 18/20 TA TA TA TA TA TA TA TA TA CC
10104834 TA * 25 45/50 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA CA TA CC AG
10105126 AT * 17 31/34 AT AT AT AT AT AT AT AT AT AT AT TT AT TT AT TT AT
10157957 AT * 23 42/46 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT AG AT GG
10162310 GT * 11 20/22 GT GT GT GT GT GT GT GT GT GT CG
10164060 AG * 13 24/26 AG AG AG AG AG AG AG AG AG AG AT AG AT
10176794 AG * 10 18/20 AG AG AG AG AG AG GG AA AG AG
10245295 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CG AA
10287951 GA * 10 18/20 GA GA GA GA GA TA GA GA GT GA
10308007 GT * 13 25/26 GT GT GT GT GT GT GT GT GT GT GT GT GC
10308656 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG TG GA
10311641 TC * 10 18/20 TC TC TC AC TC TC TC TC TC TA
10312780 AG * 14 26/28 AG AG AG AG AG AG AG AG AG AT AG AG AG AT
10316304 TC * 10 18/20 TC TC TC TC TC TC TC TC TA TT
10331387 TC * 10 18/20 TC AC TC TC TT TC TC TC TC TC
10332912 AT * 10 18/20 AT GT AT AT AT AC AT AT AT AT
10335052 CT * 17 31/34 CT CT CT CT CT CT CT CT CT CT CT CT CT TT CT CT TC
10378415 TG * 11 20/22 TG TG TG TG TG TT TG TG TT TG TG
10400996 CT * 11 20/22 CT CT CA CT CT CT CA CT CT CT CT
10428378 TA * 27 49/54 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TC AA AA AT TA
10443532 GA * 12 22/24 GA CG GA GA GA GA GA GA GA GA GA GA
10447591 TC * 10 18/20 TC TC TC AC TC TC TC TC TC TA
10448730 AG * 14 26/28 AG AG AG AG AG AG AG AG AG AT AG AG AG AT
10452254 TC * 10 18/20 TC TC TC TC TC TC TC TC TA TT
10467326 TC * 10 18/20 TC AC TC TC TT TC TC TC TC TC
10468851 AT * 10 18/20 AT GT AT AT AT AC AT AT AT AT
10470991 CT * 17 31/34 CT CT CT CT CT CT CT CT CT CT CT CT CT TT CT CT TC
10514354 TG * 11 20/22 TG TG TG TG TG TT TG TG TT TG TG
10536935 CT * 11 20/22 CT CT CA CT CT CT CA CT CT CT CT
10564317 TA * 27 49/54 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TC AA AA AT TA
10579471 GA * 12 22/24 GA CG GA GA GA GA GA GA GA GA GA GA
10583952 TA * 20 37/40 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG CT
10586973 GA * 10 18/20 GA GA GA GA GA GA GA AA GA GG
10625251 AT * 13 24/26 AT AA AT AT AT AT AT AT AT AT AT AT AA
10637022 TA * 12 23/24 TA TA CA TA TA TA TA TA TA TA TA TA
10638156 AT * 24 44/48 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AC TC
10653195 AG * 10 18/20 AG TG AG AG AG AG AT AG AG AG
10693064 TC * 10 18/20 TC TC TC TC TC TC TC TC TT GC
10702865 TC * 13 24/26 TC AC AC TC TC TC TC TC TC TC TC TC TC
10704477 TG * 10 18/20 TG TG TG TG TG TG TG TG TG CC
10716425 AT * 11 20/22 AT TT GT AT AT AT AT AT AT AT AT
10716449 AT * 39 71/78 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GC AT AT GT AG GG CT
10726162 AG * 13 24/26 AG AG AG AG AG AG AG AG AG AG GG AG AT
10777925 AC * 10 18/20 AC AC AC AC AC AC AC AT AT AC
10800133 CA * 10 18/20 CA CA CA CA CA CA CA CA CA GT
10804413 TC * 16 30/32 TC TC TC TC TC TT TC TC TC TC TC TC TC TC TC AC
10813529 AG * 17 32/34 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AT AT
10823925 GT * 10 18/20 GT GT TT GT GT GT GT GT GT TT
10828639 GA * 13 25/26 GA AA GA GA GA GA GA GA GA GA GA GA GA
10834617 TA * 14 26/28 TA TA TA TA TA TA TA TA TA TA TA TA AT TA
10839656 TG * 11 21/22 TG TG TG TG TG TG TG TG TG TG TA
10841447 TC * 11 20/22 TC TC TC TC TC TC TC TC TC TG TG
10841565 CA * 15 27/30 CA TA CA CA CA CA CA CA CA CA CA CA CA TA CT
10846909 TG * 10 18/20 TG TG TG TG TG TG TG TG TT TT
10957416 AC * 10 18/20 AC AC AC AC AC AC AC AT AT AC
10987965 TC * 17 31/34 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TT CT
10997083 GA * 16 30/32 GA GA GA GA GA GA GA GA GA AA GA GA GA GA GA CA
11001375 TG * 11 20/22 TG TG TG TG TG TG TG TG TG AG GG
11006718 GT * 10 18/20 GT GT TT GT GT GT GT GT GT TT
11011432 GA * 13 25/26 GA AA GA GA GA GA GA GA GA GA GA GA GA
11017410 TA * 14 26/28 TA TA TA TA TA TA TA TA TA TA TA TA AT TA
11022449 TG * 11 21/22 TG TG TG TG TG TG TG TG TG TG TA
11024240 TC * 11 20/22 TC TC TC TC TC TC TC TC TC TG TG
11024358 CA * 15 27/30 CA TA CA CA CA CA CA CA CA CA CA CA CA TA CT
11029702 TG * 10 18/20 TG TG TG TG TG TG TG TG TT TT
11201962 CA * 12 23/24 CA CA CA CA CA CA CA CA CA CA CA CT
11211468 TA * 10 18/20 TA TT AA TA TA TA TA TA TA TA
11211843 TA * 46 84/92 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA CC AG CC GT
11212161 TA * 24 44/48 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA GT AA TA TA TT
11214582 AT * 10 19/20 AT AT AT AT AT AT AT AT AA AT
11228213 AT * 10 19/20 AT AT AT AT AT AT AT TT AT AT
11273112 TC * 10 18/20 TC TC TC TC TC TC TC TC AC TG
11311451 TC * 10 18/20 TC TC TC TC TC TC TC TC AC TG
11315738 AT * 10 18/20 AT AT AT AT AA AC AT AT AT AT
11318406 TA * 26 47/52 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA GA TG GT TA AA
11365951 CT * 11 20/22 CT CT CT CT CT CT CT CC CT CT CG
11366831 CT * 10 18/20 CT CT CT CT CT CT CT CT CA CC
11385551 TA * 11 20/22 TA TA TA AC TA TA TA TA TA TA TA
11624836 TC * 10 18/20 TC TT GC TC TC TC TC TC TC TC
11625462 TG * 11 20/22 TG TG TG TG TG TA TG TG TA TG TG
11642586 TC * 15 28/30 TC TC TC TC TC TC TC TC TC TC TC TC TT TC AC
11642653 CT * 11 21/22 CT CT CT CT CT CT CT CT CT CT CG
11657490 GA * 12 22/24 GA GA GA GC GA GA GG GA GA GA GA GA
11683598 CT * 10 18/20 CT CT CT CT CT GG CT CT CT CT
11753700 GT * 17 31/34 GT CT GT GT GT GT GT GT GT GT GT GT GT GT GT GT TA
11884982 TA * 11 20/22 TA TA TA TA TA TA TA TA TT TA CA
11940610 AC * 15 27/30 AC AC AC TC AC AC AC AC AC AC AC AC AC AA AT
11992343 CT * 10 18/20 CT CT CA CT CT CT CG CT CT CT
12046467 TG * 10 18/20 TG TA TG TG GG TG TG TG TG TG
12051995 GT * 10 18/20 GT TG GT GT GT GT GT GT GT GT
12052203 AT * 11 20/22 AT AT TT AT AT AT AT AT AT AG AT
-----------------------------------------------------------------------------------------
Total sequence length......................... 12114540
Minimum Di-Nucleotide repeat units............ 10
Mismatch allowed ............................. 10%
Total number of repeats detected.............. 358
-----------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 28 34 37 31 12 18 29 14 50 30 1 0
15 to 19 5 1 6 3 3 2 0 1 6 4 0 0
20 to 24 2 4 1 0 1 0 0 1 3 0 0 0
25 to 29 3 4 2 1 1 1 0 0 0 1 0 0
30 to 34 0 0 0 1 0 0 0 0 1 1 0 0
35 to 39 1 0 0 0 0 0 0 0 0 1 0 0
40 to 44 0 1 2 1 0 0 1 0 0 0 0 0
45 to 49 0 1 0 0 0 0 0 0 0 1 0 0
50 and more 0 0 1 1 0 1 1 1 1 0 0 0
-----------------------------------------------------------------------------------------
Total 39 45 49 38 17 22 31 17 61 38 1 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
39 AT + 45 TA = 84
49 AG + 38 GA + 38 CT + 61 TC = 186
17 GT + 31 TG + 22 CA + 17 AC = 87
1 GC + 0 CG = 1
-----------------------------------------------------------------------------------------
Di-Nucleotide repeats in C. elegans Chromosome-III complete sequence
Minimum di-nucleotide repeating units = 10 (allowing a maximum of 10% mismatch)
Total 358 repeats covering 9281 / 10164 base pairs
Length distribution of all di-nucleotide repeats
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
no. of repeat-units 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 >=50
total repeats 139 65 42 30 8 7 7 10 7 0 2 3 2 3 2 3 1 5 4 0 0 1 2 0 0 0 1 0 0 1 2 1 0 2 0 0 2 0 0 0 6
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Length distribution of different di-nucleotide repeat classes
no. of repeat-units 10-14 15-19 20-24 25-29 30-34 35-39 40-44 45-49 >=50
total repeats--> 284 31 12 13 3 2 5 2 6
AT 28 5 2 3 0 1 0 0 0
TA 34 1 4 4 0 0 1 1 0
AG 37 6 1 2 0 0 2 0 1
GA 31 3 0 1 1 0 1 0 1
AC 12 3 1 1 0 0 0 0 0
CA 18 2 0 1 0 0 0 0 1
TG 29 0 0 0 0 0 1 0 1
GT 14 1 1 0 0 0 0 0 1
TC 50 6 3 0 1 0 0 0 1
CT 30 4 0 1 1 1 0 1 0
GC 1 0 0 0 0 0 0 0 0
CG 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------
Sequence-wise distribution of di-nucleotide repeats
Sequence AT TA AG GA AC CA TG GT TC CT GC CG
--------------------------------------------------------------------------------------------------------
lcl|chr_III -( 12114540 bp) 39 45 49 38 17 22 31 17 61 38 1 0
--------------------------------------------------------------------------------------------------------
Total ( 12114540 bp) 39 45 49 38 17 22 31 17 61 38 1 0
--------------------------------------------------------------------------------------------------------
-------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
39 AT + 45 TA = 84
49 AG + 38 GA + 38 CT + 61 TC = 186
17 GT + 31 TG + 22 CA + 17 AC = 87
1 GC + 0 CG = 1
-------------------------------------------------------------------------------
-------------------------------------------------------------------------------
Frequency distribution of di-nucleotides repeated for 20 times or more
--repeats longer than 40 bp
6 AT + 10 TA = 16
6 AG + 4 GA + 4 CT + 5 TC = 19
2 GT + 2 TG + 2 CA + 2 AC = 8
0 GC + 0 CG = 0
-------------------------------------------------------------------------------
Total repeats >= 40 bp = 43
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© Division of Biochemical Sciences, National Chemical Laboratory, Pune 411008, INDIA