Tri-Nucleotide Repeats in Genomic Sequences
Tri-Nucleotide Repeats in
C. elegans Chromosome-II complete sequence
Genomic sequence
lcl|chr_II
Position Repeat Coverage Repeat
44734 TAC * 7 19/21 TAC TCC TAC TCC TAC TAC TAC
45415 GAA * 7 19/21 GAA GAA AAA GAA GAA GAT GAA
97293 ATA * 8 23/24 ATA ATA ATA ATA ATA ATA ATA ATT
100649 TGG * 7 19/21 TGG AGG TGG TGG TGG TGG AGG
158624 ACA * 8 23/24 ACA GCA ACA ACA ACA ACA ACA ACA
184686 TGT * 8 22/24 TGT TGC TGT GGT TGT TGT TGT TGT
212734 AGA * 8 22/24 AGA AGA AGA AGA AGA AGA GGA GGA
268431 TCA * 7 19/21 TCA TCA TCC TCA TCA TCA TCG
383401 AAT * 36 99/108 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT ATT AAA ATG AAT AGT TAA ATT AAA
388284 CTT * 7 20/21 CTT CTT TTT CTT CTT CTT CTT
448973 TCT * 7 19/21 TCT ACT TCT TCT TCT TCT TCA
525896 AGT * 7 19/21 AGT AGT AGT AAT AGT AGT GGT
634122 TCC * 7 19/21 TCC TCC TTC TCC TCC TCC TTC
860338 TCC * 7 19/21 TCC TCC TCC TCC TCC CCC TAC
1043719 ATT * 7 19/21 ATT AGT TTT ATT ATT ATT ATT
1092894 TCC * 7 19/21 TCC TCC TCC ACC TCC ACC TCC
1196153 GAA * 7 19/21 GAA GAA GAA GAA GAA GAA CAT
1223861 GCG * 7 19/21 GCG GCT GCG GCG GCG GCG ACG
1224442 GAA * 7 19/21 GAA GAA GAA GAA GAA AAA TAA
1232314 GAA * 7 20/21 GAA GAA GAA GAA GAA GAA GAC
1268693 TTA * 7 20/21 TTA TTA TTA TTA TTA TTA TTG
1284376 AAT * 7 19/21 AAT AAT AAT AAT AAT AAT TCT
1299622 TTC * 7 19/21 TTC TTC TTC TCC GTC TTC TTC
1327397 CTC * 7 19/21 CTC ATC CTC GTC CTC CTC CTC
1924323 ATT * 7 19/21 ATT ATT ATT ATT ATT ATT AAA
2058658 ACT * 7 19/21 ACT ACT ACT ACT ACA ACT ACA
2095744 AGA * 8 22/24 AGA AGA AGT AGT AGA AGA AGA AGA
2594392 AAT * 17 46/51 AAT AAT ACT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT ATT AAT CCG
2596906 AAT * 17 46/51 AAT AAT ACT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT ATT AAT CCG
2693148 CTT * 7 19/21 CTT CTT CTT CTT CTT ACT CTT
2772935 AGA * 7 19/21 AGA AAC AGA AGA AGA AGA AGA
2808418 AAG * 7 19/21 AAG AAG AAG AAG AAA AAG AAA
3255790 ATT * 8 23/24 ATT ATT ATT ATT ATT ATT ATT AGT
3372172 GAA * 7 19/21 GAA AAA GAA GAA GGA GAA GAA
3400438 ATT * 8 23/24 ATT ATT ATT ATT ATT ATT ATT AGT
3493727 TCT * 8 22/24 TCT TTT TCT TCT TCT TCT TCT TCG
3753549 TTA * 7 20/21 TTA ATA TTA TTA TTA TTA TTA
3756017 GTA * 7 19/21 GTA GTA GTT GTA GTA GTT GTA
3846129 AAT * 11 30/33 AAT AAT AAT AAT AAT AAT AAT AAT AAT GAT ATG
3848402 GTA * 8 22/24 GTA GTA GTA GTA GTA GTA GTA GGC
3876557 TCT * 7 19/21 TCT TCT TCT CAT TCT TCT TCT
3885506 CGG * 7 19/21 CGG CGG CGG CGG CGG CAC CGG
3901924 CAG * 7 19/21 CAG CAG CAG CAC CAG CAA CAG
3905708 GAC * 7 19/21 GAC GAC GAC GAC GAC GAC TTC
3924569 CGA * 7 20/21 CGA CAA CGA CGA CGA CGA CGA
3936658 GGT * 7 19/21 GGT GGT TGT GGT TGT GGT GGT
3950681 ATT * 7 19/21 ATT ATT ATT ATT ATT AGG ATT
3952061 AAG * 7 20/21 AAG AAG AAG AAG AAG AGG AAG
3960055 CAG * 7 19/21 CAG CAG CAG CAA CAG CAG CAA
3960103 CAG * 7 19/21 CAG CAG CAG CAG CAA CAA CAG
3962125 TAA * 7 19/21 TAA TAA TGA TAA TAA TAA TTA
3996743 TCT * 8 22/24 TCT TCT TCT CCT TCT TCT TCT TCC
4005708 CGA * 8 22/24 CGA CGA CGA CGA CGA CGA TGA AGA
4013789 ATC * 7 19/21 ATC ATC ATG CTC ATC ATC ATC
4052163 AGA * 7 19/21 AGA AGA CGA AGA AGA CGA AGA
4054300 TGC * 10 27/30 TGC TGC TGC TGC TGT TGC TGC TGC TCC TGT
4062359 TCC * 7 19/21 TCC GCC ACC TCC TCC TCC TCC
4103274 TAT * 7 19/21 TAT TAT TAT TAT TAT TAT TTA
4111947 GTT * 7 19/21 GTT GTG GTT GTT GGT GTT GTT
4211745 TTC * 7 20/21 TTC TTC TTC TTC TTC TTC ATC
4221920 GAA * 9 25/27 GAA GAA TAA GAA AAA GAA GAA GAA GAA
4279815 GAA * 8 22/24 GAA GAA GAA GAA GAT GAA GAT GAA
4407139 AGT * 8 22/24 AGT AGT AGT AGT AGT CGT ACT AGT
4434779 TCA * 7 19/21 TCA TCA TCA TCA TCA TCA TAT
4499306 TGA * 9 25/27 TGA TGA TGA TGA TGA TGA TGA TGA TTC
4504015 GAA * 7 19/21 GAA GAA GAA AAA GAA AAA GAA
4505658 TAT * 8 22/24 TAT TAT TAT TAA TAT TAT GAT TAT
4505826 GAT * 7 19/21 GAT GAT GAT GAT GAT GAT GTC
4507166 ATG * 7 19/21 ATG ATG ATG ATG ATG ATG TGG
4512572 TTA * 11 30/33 TTA TTG TAA TTA TTA TTA TTA TTA TTA GTA TTA
4554920 CCA * 8 22/24 CCA CCA CCA TCA CCA CCA CCA CAA
4684675 ATA * 14 40/42 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA TTT
4727914 ATA * 7 19/21 ATA GTA ATA ATA ACA ATA ATA
4740518 TTC * 7 19/21 TTC TTC TTC TTC TTG CTC TTC
4790816 AGA * 7 19/21 AGA AGA AGA AGA AGG ATA AGA
4901695 TCT * 7 19/21 TCT TCT TCT TCT TCT TGT TCC
4916012 AGA * 8 22/24 AGA AGT AGA ATA AGA AGA AGA AGA
4919715 TCT * 7 19/21 TCT TCT TCT TCT TCT TTT CCT
4928927 TTA * 7 19/21 TTA TTA TTA TTT TTA TTA TTT
4929150 AGA * 7 19/21 AGA AGA AGA AGA AAA AGA AGT
4981544 TCT * 7 20/21 TCT TCT TCT TCT TCT TTT TCT
5002237 TCC * 7 19/21 TCC TCC TCC ACC TCC TCC ACC
5005856 AAT * 7 20/21 AAT AAT AAT AAT AAT AAT AAA
5032384 TGG * 7 19/21 TGG TGG AGG TGG TGG TGG TGA
5052738 ATC * 8 22/24 ATC ATC ATC ATC ATC GTC AGC ATC
5055276 TTC * 7 19/21 TTC TTC TTC ATT TTC TTC TTC
5121397 AGA * 7 19/21 AGA AGA AGA AGA AGA AGA ACG
5268347 CTC * 7 19/21 CTC TTC CTC CTC CTC CTC TTC
5341935 GTG * 11 30/33 GTG GTG GTC GTG GTG GTG GTG GTG GTT GTG GTA
5392348 GCA * 7 19/21 GCA GCA GCA GCA GCA ACA ACA
5435318 CTT * 7 19/21 CTT GTT GTT CTT CTT CTT CTT
5536222 CAT * 7 19/21 CAT CAT CAT CTT CAT CAT TAT
5536458 TCA * 7 19/21 TCA TCT TCA TCT TCA TCA TCA
5598977 AAG * 8 22/24 AAG AAG AAG AAG AGG AAG AAG AAA
5627496 AAG * 7 19/21 AAG AAG AAG AAA AAC AAG AAG
5642469 TTC * 7 19/21 TTC TCC ATC TTC TTC TTC TTC
5751998 TGC * 7 19/21 TGC TGC TGC TGC TGA TGC AGC
5752072 AGA * 7 19/21 AGA GCA AGA AGA AGA AGA AGA
5835411 TTC * 7 20/21 TTC TTC TTC TTC TTC TCC TTC
5881965 ACG * 7 19/21 ACG ACG ACG ACG GCG ACG GCG
5890914 TCG * 7 19/21 TCG TCG TCG TCG TCG TCG GTG
5941408 GAA * 11 30/33 GAA GAA GAA GAA GAA GAA GAA GAA GAG GAG CAA
5944925 ATT * 7 20/21 ATT ACT ATT ATT ATT ATT ATT
6084761 TGC * 7 20/21 TGC TGC TGC TGC TTC TGC TGC
6084883 ATT * 8 22/24 ATT AAT ATT ATT ATT ATT ATT ACT
6110300 AGA * 7 19/21 AGA AGA AGA AGA AGC AGA AGG
6114946 TCA * 7 19/21 TCA TCA TCA TCA TCA TCG CCA
6121697 TTA * 8 23/24 TTA TTA TTA TTA TTA TTA TTA TTT
6122669 CGT * 7 19/21 CGT CGT CGT CGT CGT CGT CTC
6285094 CAT * 7 19/21 CAT CAT TAT CAT CAT CAT CGT
6348105 AGA * 7 19/21 AGA AGA AGA AGA AGG AAA AGA
6472659 AAG * 7 19/21 AAG AAG AAG AAA AAG GAG AAG
6474448 GAA * 7 19/21 GAA GAC GTA GAA GAA GAA GAA
6579694 AAG * 7 19/21 AAG TAG AAG AAG GAG AAG AAG
6621510 ACA * 8 22/24 ACA GCA ACA ACA GCA ACA ACA ACA
6621675 ACA * 9 25/27 ACA ACA ACA ACA GCA ACA ACA ACA ACG
6645123 TAT * 8 22/24 TAT CTT TAT TAT TAT TAT TAT TAT
6664324 CGA * 7 19/21 CGA CGA CGA CGA CGT CCA CGA
6681916 TTA * 7 19/21 TTA TTA TTA TTA TTA TTA TAC
6692849 CAA * 7 20/21 CAA CAA CAA CAA CAG CAA CAA
6743577 TCT * 7 19/21 TCT TCT TCT TCG TCT TCT TTT
6755559 ATG * 7 19/21 ATG ATG ATG ATG ATG ATG GTT
6781953 GCA * 7 19/21 GCA GCA GCA GCA GCA GCA CAA
6782424 ATC * 7 19/21 ATC CCC ATC ATC ATC ATC ATC
6880812 AGA * 7 19/21 AGA AGA AGA AGA AGA AGA TGC
6889536 AGA * 8 22/24 AGA TGA AGA AGA AGA AGA CGA AGA
6941078 TTC * 8 23/24 TTC TTC TTC ATC TTC TTC TTC TTC
6958530 AAG * 7 20/21 AAG AAG AAG AAG AAG AGG AAG
7045160 ATT * 7 21/21 ATT ATT ATT ATT ATT ATT ATT
7058675 CAA * 18 49/54 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA GGA GGT CAA
7087923 CAA * 8 22/24 CAA CAG CAA CAA CAA CAA CAA CCA
7100464 TTC * 7 19/21 TTC GTC TTC TTC TTT TTC TTC
7111763 GAA * 7 19/21 GAA GTA GAA GAA GAA GAA GGA
7113915 TTA * 7 19/21 TTA TTA TTA TTA TTA CTA CTA
7117760 CTT * 11 30/33 CTT CTT CTT CTT CTT CTT CTT CTT CTT CAA CTC
7151676 TAT * 8 22/24 TAT TAT TAT TAT TAT TAT TAG TTT
7165296 CAA * 7 19/21 CAA CAA CAA CAA AGA CAA CAA
7182537 CAA * 7 19/21 CAA CAA CAA CTA CAA CTA CAA
7246409 CAT * 7 19/21 CAT CAT CAT CAT CAT CAT AGT
7262037 AAG * 10 28/30 AAG AAG AAG CAG AAT AAG AAG AAG AAG AAG
7312077 ACA * 7 20/21 ACA ACA ACA ACA ACA ACC ACA
7346879 GTC * 7 19/21 GTC GTC GTC GTC GTC GTC TTG
7381449 ACG * 21 57/63 ACG ACG ACG ACG ACG ACG ACG ACG ACG ACG ACG ACG ACG ACG ACA ACA ACG ACA ACA ACA AAG
7385958 TTG * 7 19/21 TTG TTG TTG TCG TTG TTG TCG
7385979 TCG * 15 42/45 TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG TAG CTG
7435066 AAG * 7 19/21 AAG AAA AAG AAG AAG AAG AAC
7445188 AAG * 7 19/21 AAG AAG AAG AAG ACG AAA AAG
7528203 GAA * 7 20/21 GAA GAA GTA GAA GAA GAA GAA
7528478 CTT * 7 19/21 CTT CTT CTT CGT CCT CTT CTT
7562913 CAT * 7 20/21 CAT CAT CAT CAT CAT AAT CAT
7572007 GAA * 10 27/30 GAA GAA GAA GCA GAA GAA AAA GAA GAA TAA
7576148 ATG * 8 22/24 ATG ATC ATG ATG ACG ATG ATG ATG
7610065 CGA * 7 19/21 CGA CGA CGA CGA CGA AAA CGA
7650887 CTT * 8 22/24 CTT CTT CTT CTT TTT CTT CTT TTT
7653838 AAT * 7 19/21 AAT AAT AAT AAT AAT ACT AAG
7738395 ATG * 7 20/21 ATG ATG ATG ATG ATG ATG ATA
7828405 TAG * 9 25/27 TAG TAG TAG TAG TAG TAG TAG TAG CAC
7859354 TCT * 7 20/21 TCT TCT TCT TCT TCT TCT TTT
7880386 AGA * 7 19/21 AGA AGT AGA AGA AGA AGC AGA
7921483 CAA * 7 19/21 CAA CCA CAA CTA CAA CAA CAA
7921535 TCA * 9 25/27 TCA TCT TCA TCA TCA TCA TCA TCA TAA
7926092 TCT * 7 20/21 TCT TCT TCT TCT TCT TCT TTT
7957419 TTC * 10 28/30 TTC TTC TTC TTC TTC TTC TTG TTA TTC TTC
7979392 GTG * 7 19/21 GTG ATG GTG GTG GTG GTG GAG
7979450 TGG * 7 19/21 TGG TGG AGG CGG TGG TGG TGG
8074962 GAA * 7 19/21 GAA GAT GAA GAA GAA GAA GAC
8097648 TTC * 7 19/21 TTC TTT TTC TTC TTC CTC TTC
8098301 TAC * 8 22/24 TAC TAC TAC TAC TAC TTC TGC TAC
8109188 ATG * 8 22/24 ATG ATG AAG ATG ATG ACG ATG ATG
8123377 GTA * 9 25/27 GTA GTA GTA GTA GTA GTA GTA GTT GTT
8124721 ATA * 7 19/21 ATA ATA TTA ATA ACA ATA ATA
8145616 GAT * 7 19/21 GAT GGT GAT GAA GAT GAT GAT
8172530 ACA * 7 19/21 ACA ACA ACA ACA GCA GCA ACA
8192955 GTA * 9 25/27 GTA GTA GTA GTA GTA GTA GTA GTT GTT
8194299 ATA * 7 19/21 ATA ATA TTA ATA ACA ATA ATA
8215200 GAT * 7 19/21 GAT GGT GAT GAA GAT GAT GAT
8242152 ACA * 7 19/21 ACA ACA ACA ACA GCA GCA ACA
8289561 TTC * 7 19/21 TTC TTC TTC TTC TTC CTC CTC
8354983 CTT * 8 22/24 CTT CTT CTT CTT GTT CTT GTT CTT
8376649 CAA * 7 19/21 CAA CAA CAA CAA CCA CAG CAA
8431377 TTC * 7 19/21 TTC TTC TTC TTC TTC CTC CTC
8496701 CTT * 8 22/24 CTT CTT CTT CTT GTT CTT GTT CTT
8518367 CAA * 7 19/21 CAA CAA CAA CAA CCA CAG CAA
8597079 TCA * 8 22/24 TCA TCA TCA CCA ACA TCA TCA TCA
8604288 ATG * 8 22/24 ATG ATG ATG ATG ATG TTG ATG CTG
8698725 TAT * 7 19/21 TAT CAT TAT TAT TAT TAT TCT
8736844 AAG * 7 20/21 AAG AAG AAA AAG AAG AAG AAG
8742292 AAG * 8 22/24 AAG AAG TAG AAG AAG TAG AAG AAG
8755222 TCT * 7 20/21 TCT TCT TCT TCT GCT TCT TCT
8802837 TTC * 7 19/21 TTC TTC TTC TTC TCC TTC TGC
8834483 GAT * 8 23/24 GAT GAA GAT GAT GAT GAT GAT GAT
8844966 TTC * 7 19/21 TTC TTC ATC TGC TTC TTC TTC
8892666 TTA * 7 20/21 TTA TTA TTA TTA TTA TTA TTG
8947239 TTA * 7 20/21 TTA TTA TTA TTA TTA TTA TTT
8991829 TTC * 7 19/21 TTC TCC TTC TTC TTC TAC TTC
9110996 ATA * 7 20/21 ATA ATA ATA ATA ATA ATA ACA
9166598 AAG * 7 19/21 AAG AAG GAG AAG AAG AAG ACG
9222118 TCA * 7 19/21 TCA TCA TCA GCA TCC TCA TCA
9224410 AGA * 8 22/24 AGA AAA AGA AAA AGA AGA AGA AGA
9232016 TGG * 7 19/21 TGG TGG TGG CGG TGG AGG TGG
9327860 TTC * 7 19/21 TTC ATT TTC TTC TTC TTC TTC
9424248 AGA * 9 26/27 AGA AGA GGA AGA AGA AGA AGA AGA AGA
9521527 ACG * 8 23/24 ACG ACG ACG GCG ACG ACG ACG ACG
9524314 GAA * 8 22/24 GAA GAA GAT GAA GAA GAA GAA GAT
9524341 GAA * 7 19/21 GAA GAA GAA GAG GAA GAA AAA
9535099 TAT * 8 23/24 TAT TAT TGT TAT TAT TAT TAT TAT
9625414 ACG * 8 23/24 ACG ACG ACG GCG ACG ACG ACG ACG
9628201 GAA * 8 22/24 GAA GAA GAT GAA GAA GAA GAA GAT
9628228 GAA * 7 19/21 GAA GAA GAA GAG GAA GAA AAA
9638986 TAT * 8 23/24 TAT TAT TGT TAT TAT TAT TAT TAT
9675322 CTT * 7 19/21 CTT CTT CTT CTT CGT CCT CTT
9689104 TAA * 8 22/24 TAA TAA TAA TAA TGA TAA TAA TTA
9763446 CTT * 7 19/21 CTT CTT CTT CTT CGT CCT CTT
9777228 TAA * 8 22/24 TAA TAA TAA TAA TGA TAA TAA TTA
9927696 ATC * 10 27/30 ATC ATC ATC ATC ATC ATC CTC ATT ATC TTC
9951518 TTG * 7 19/21 TTG TTT TTG TTG TTG TTG TCG
9998016 ATG * 7 19/21 ATG ATG ATT ATG ATG TTG ATG
10249253 TAT * 7 20/21 TAT TAT TAT TAT TAT TAT TAG
10332936 CTT * 7 19/21 CTT CTT CTT CTT CTT CCT TTT
10336686 CTT * 7 20/21 CTT CTT CTT CTT CTT CTT TTT
10349519 TCT * 7 19/21 TCT TCT TCT TCT ACT TAT TCT
10366623 CTT * 8 22/24 CTT CTT CTT CTT CTT CTT TTT CTA
10456259 GAA * 7 19/21 GAA GAA GAC GAA GCA GAA GAA
10546903 GTG * 7 21/21 GTG GTG GTG GTG GTG GTG GTG
10560439 GAA * 7 19/21 GAA GAA GAA GAA CAA GTA GAA
10643097 AGA * 8 23/24 AGA AGA AGA AGA AGA AGA TGA AGA
10643136 TGA * 8 22/24 TGA TGA TGA TGA TGA TGA GGA TAA
10659858 AGA * 7 19/21 AGA AGA AAA AGA AGA AGC AGA
10661875 CAT * 7 19/21 CAT CAT CAT CTT CAT CAT CGT
10676143 ACC * 7 20/21 ACC ACC ACC ACC GCC ACC ACC
10684384 TTC * 10 27/30 TTC ATC TTC TTC TTC TTC TTC TTC TTC CTG
10711701 TTC * 7 19/21 TTC TTC TTC TTC TTC TTC ATG
10715425 ACT * 7 19/21 ACT ACT ACC ACT ACT ACA ACT
10728614 TCA * 7 20/21 TCA TCA TCC TCA TCA TCA TCA
10777454 TGC * 7 19/21 TGC TGC TGA TTC TGC TGC TGC
10815039 ATG * 7 19/21 ATG ATG ACG AAG ATG ATG ATG
10884535 TGA * 7 19/21 TGA TGA TGA TGA CGA TGA AGA
10914345 GTC * 7 19/21 GTC ATC ATC GTC GTC GTC GTC
10955372 CTT * 10 27/30 CTT CTT CTT CCT CTT CTT CTT CTT CTC CAT
11026952 AAG * 7 19/21 AAG AAA AAG AAA AAG AAG AAG
11057676 TCT * 7 20/21 TCT TCA TCT TCT TCT TCT TCT
11127767 GAA * 15 41/45 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GCT GAA GAC GAC
11129034 GAT * 7 19/21 GAT GAT GAT GAT GAT GAT GGA
11159715 AAG * 7 19/21 AAG AAG AAG AAG AAG TAG CAG
11161303 AGA * 7 19/21 AGA AGA AGA AGC AGA AGA AAA
11256173 TCC * 7 19/21 TCC TCC TCC TCG TCC TCG TCC
11275643 GTG * 7 19/21 GTG GTG GTG GTG GTG GAG GTA
11394305 TCC * 7 19/21 TCC TCC TCC TCG TCC TCG TCC
11413774 GTG * 7 19/21 GTG GTG GTG GTG GTG GAG GTA
11528841 CTT * 7 19/21 CTT CTT CTT CTT CTT CAG CTT
11553881 CTT * 7 19/21 CTT TTG CTT CTT CTT CTT CTT
11559464 GGA * 7 19/21 GGA GAA GGA TGA GGA GGA GGA
11560416 TTC * 8 22/24 TTC TGC TTC TGC TTC TTC TTC TTC
11569593 TGT * 8 22/24 TGT TGT TGT TGT TGT TGT TGT ATT
11591187 GAA * 7 20/21 GAA GAA AAA GAA GAA GAA GAA
11607006 AGA * 7 21/21 AGA AGA AGA AGA AGA AGA AGA
11612362 TCT * 8 22/24 TCT TCT TTT TCT TCT TCT TTT TCT
11627521 AAG * 7 19/21 AAG AAG AAG ATG GAG AAG AAG
11650952 AAG * 7 19/21 AAG AAG ACG AAG AAG AAG ATG
11652267 AGA * 8 22/24 AGA AGA AGA AGA AGT AGA AGA TGA
11729476 AAG * 7 19/21 AAG AAG AAG AAG AAG AAT GAG
11747812 TCC * 7 19/21 TCC TCT TCC TCC TCC TCC TCA
11756838 AAG * 7 20/21 AAG ACG AAG AAG AAG AAG AAG
11790061 CAG * 7 19/21 CAG CAG CAA CAA CAG CAG CAG
11818649 GAT * 7 19/21 GAT GAT GAT GAT GAT GAC CAT
11821690 AGA * 8 22/24 AGA AGA AGA AGA AGA TGA TGA AGA
11838286 TAT * 8 22/24 TAT CAT TAT TAT TAT TAT TAT TAC
11844252 TTA * 7 19/21 TTA TTA TTA TTG TTA TTA TTG
11846172 GAT * 7 19/21 GAT GAT GAC GAC GAT GAT GAT
11897348 AAG * 7 19/21 AAG TAG AAT AAG AAG AAG AAG
11957688 AAG * 8 22/24 AAG AAG AAA AAG AAG AAG AGG AAG
11973678 CTT * 7 19/21 CTT CTT TAT CTT CTT CTT CTT
12063631 TTG * 7 19/21 TTG TTG TTG TTG TTG TTA TTC
12281738 GAC * 8 22/24 GAC AAC GAC AAC GAC GAC GAC GAC
12286732 AGA * 8 22/24 AGA AGA AGA AGA AGA AAA AGA ACA
12325562 TTC * 8 22/24 TTC TTC TTC TTC TTC TTC TTC TCT
12376667 TTC * 8 22/24 TTC TTC TTC TTC TTC TTC TTC TCT
12422760 AGA * 7 20/21 AGA AGA AGA AGA AGA AGA AGC
12432589 AAG * 7 19/21 AAG AAG GAG GAG AAG AAG AAG
12458911 TTC * 8 23/24 TTC TTC TTC TTC TTC TTC TTC TTT
12458940 ACC * 7 19/21 ACC ACC ACC AAC ACT ACC ACC
12468127 GAA * 7 19/21 GAA GAA GAA GAA TAA GAA GGA
12505328 TCC * 7 19/21 TCC TTC TCC TCC TCC TCC TTC
12521956 CTC * 7 20/21 CTC CTC CTC CTC CGC CTC CTC
12544901 AGC * 10 27/30 AGC AGC AGC AGC AGC AGC AGC AGC AGA CAC
12545012 ATC * 11 30/33 ATC ATC ATT ATC ATC ATC ATC ATC ATC AAC GTC
12550539 CTC * 7 19/21 CTC CTC CTC CTC ATC ATC CTC
12551966 GAG * 7 19/21 GAG GAG GAG GAG GTG GAA GAG
12590002 ATT * 7 19/21 ATT GTT ATT ATT ATC ATT ATT
12605934 AAT * 10 27/30 AAT AAT AAT AAT AAT AAT AAT AAT AAT TTA
12629218 CAG * 7 19/21 CAG CAG CAG CAG GAG CAG TAG
12666773 AAT * 8 22/24 AAT AAT AAT AAT AAT AAT AAT GAA
12707745 GAG * 8 22/24 GAG GAG GCG GAG GAG GAG GAG AAG
12724147 CCT * 7 19/21 CCT CTT CCA CCT CCT CCT CCT
12736420 CTC * 7 19/21 CTC CTC CTC CTC ATC ATC CTC
12742148 CTG * 7 19/21 CTG CTG CTG CTG CTG ATG TTG
12779832 CAG * 7 19/21 CAG CAG CAG CAG GAG CAG TAG
12817394 AAT * 8 22/24 AAT AAT AAT AAT AAT AAT AAT GAA
12839623 AAT * 12 33/36 AAT AAT AAT AAT AAT AAT AAT AAA AAT AAT AAT ATA
12871937 CAT * 7 20/21 CAT CAT CAT CAT CAT CAT CGT
12892032 CAC * 7 19/21 CAC CAT CAA CAC CAC CAC CAC
12930594 ATT * 10 27/30 ATT ATT ATT ATT ATT ATT ATT ATT ATT TAA
13003125 ATT * 10 27/30 ATT ATT ATT ATT ATT ATT ATT ATT ATT TAA
13060475 ATT * 10 27/30 ATT ATT ATT ATT ATT ATT ATT ATT ATT TAA
13091377 CTT * 8 22/24 CTT CTT CTT CTA CTT CTT CTA CTT
13164175 AAT * 7 19/21 AAT AAT AAT AAT AAT ACA AAT
13187873 GCG * 7 19/21 GCG GTG GCG GCG GCG GCA GCG
13220346 AGA * 10 28/30 AGA AGA AGA TGA AGA AGA AGA AGA AGA AGC
13248156 CTT * 7 19/21 CTT CTT CTT TCT CTT CTT CTT
13330863 TAT * 7 19/21 TAT GAT TAT TAC TAT TAT TAT
13336998 AGG * 8 22/24 AGG AGC AGG AGG AGG AGG AGT AGG
13371107 TCA * 7 19/21 TCA TCA CCA TCA TCC TCA TCA
13528413 GAT * 9 25/27 GAT GAT GAT GAT GAT GAT GAT GAG AAT
13530209 TGG * 7 19/21 TGG TGG TGG TGG AGG TGG AGG
13539620 ATT * 8 22/24 ATT ATT ATT ATC ATT GTT ATT ATT
13603790 TAT * 7 19/21 TAT GAT TAT TAC TAT TAT TAT
13609925 AGG * 8 22/24 AGG AGC AGG AGG AGG AGG AGT AGG
13644033 TCA * 7 19/21 TCA TCA CCA TCA TCC TCA TCA
13711439 GAT * 9 25/27 GAT GAT GAT GAT GAT GAT GAT GAG AAT
13713237 TGG * 7 19/21 TGG TGG TGG TGG AGG TGG AGG
13722646 ATT * 8 22/24 ATT ATT ATT ATC ATT GTT ATT ATT
13732311 AGA * 10 28/30 AGA AGA AGA TGA AGA AGA AGA AGA AGA AGC
13745597 AAT * 7 19/21 AAT AAT AAT AAT AAT ACA AAT
13755003 CTT * 7 19/21 CTT CTT CTT TCT CTT CTT CTT
13791327 GCG * 7 19/21 GCG GTG GCG GCG GCG GCA GCG
13830523 ATC * 8 22/24 ATC ATC ATC ATC ATC ATC TTC TTC
13830547 TTC * 10 28/30 TTC TTC TTC TAC TTC TTC TTC TTC GTC TTC
13848019 CAC * 7 19/21 CAC CTC CTC CAC CAC CAC CAC
13915152 TTA * 8 22/24 TTA ATA TTA TTA TTA GTA TTA TTA
13933954 ACT * 9 25/27 ACT AAT ACT ACT ACT ACT ACT ACT ACA
13980009 CTT * 7 20/21 CTT CTT CTT CTT CTT CTT TTT
13981928 CTT * 7 20/21 CTT CTT CTT CTT CTT CTT CCT
14018625 TTA * 8 22/24 TTA ATA TTA TTA TTA GTA TTA TTA
14040371 ACT * 9 25/27 ACT AAT ACT ACT ACT ACT ACT ACT ACA
14086424 CTT * 7 20/21 CTT CTT CTT CTT CTT CTT TTT
14088343 CTT * 7 20/21 CTT CTT CTT CTT CTT CTT CCT
14103777 AGA * 7 19/21 AGA AGA AGA TGA AGA AGA CGA
14117283 CAT * 8 22/24 CAT CAT CAC CAT CAT CAT CAT CGT
14193115 CTT * 8 22/24 CTT CTT CTT CTA CTT CTT CTA CTT
14224459 CTT * 7 20/21 CTT CTT CTT CTT CTT CTT TTT
14226378 CTT * 7 20/21 CTT CTT CTT CTT CTT CTT CCT
14241812 AGA * 7 19/21 AGA AGA AGA TGA AGA AGA CGA
14255318 CAT * 8 22/24 CAT CAT CAC CAT CAT CAT CAT CGT
14292140 ACT * 9 25/27 ACT AAT ACT ACT ACT ACT ACT ACT ACA
14402339 CTT * 8 22/24 CTT CTT CTT CTA CTT CTT CTA CTT
14411587 TTA * 10 27/30 TTA TTC ATA TTA TTA TTA TTA TTA TTA TTG
14421698 TGA * 7 19/21 TGA TGA CGA GGA TGA TGA TGA
14425282 TCA * 7 19/21 TCA TCA TCA TGA TGA TCA TCA
14426749 GAA * 7 20/21 GAA GAA GAA GAA GAA GGA GAA
14427999 ATA * 8 23/24 ATA ATA ATA ATA ATA ATA ATA ATT
14441270 ACG * 7 19/21 ACG ACG ACG ACG ACG ACG AAA
14445606 ACG * 7 19/21 ACG ACG ACG ACG ACG ACG AAA
14512614 CTT * 7 20/21 CTT CTT CTT CTT CTT CTT CTC
14533290 TTC * 7 21/21 TTC TTC TTC TTC TTC TTC TTC
14620763 CTC * 7 19/21 CTC TTC CTC CTC GTC CTC CTC
14634481 AAT * 12 33/36 AAT CAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AGC
14669709 CTT * 8 22/24 CTT CTT CTT CTT CTT CTT CTT TTG
14739461 CCA * 7 19/21 CCA CCG CCA TCA CCA CCA CCA
14752631 GGC * 7 19/21 GGC GGC GGC GGC GGC CGT GGC
14771399 GAT * 7 19/21 GAT GAA AAT GAT GAT GAT GAT
14773467 GAC * 7 19/21 GAC GAC GAC GAC GGC GAC GAT
14808257 CTT * 8 22/24 CTT CTT CTT CTA CTT CTT CTA CTT
14817503 TTA * 10 27/30 TTA TTC ATA TTA TTA TTA TTA TTA TTA TTG
14827452 ACG * 7 19/21 ACG ACG ACG ACG ACG ACG AAA
14909838 CTT * 7 20/21 CTT CTT CTT CTT CTT CTT CTC
14944013 CTT * 7 20/21 CTT CTT CTT CTT CTT CTT CTC
14964681 TTC * 7 21/21 TTC TTC TTC TTC TTC TTC TTC
14992918 ATT * 7 21/21 ATT ATT ATT ATT ATT ATT ATT
15025113 GAT * 7 19/21 GAT GAA AAT GAT GAT GAT GAT
15027181 GAC * 7 19/21 GAC GAC GAC GAC GGC GAC GAT
15061484 CCG * 8 22/24 CCG CCA CCG CCG CCG CCG ACG CCG
15063364 TGC * 7 19/21 TGC TGC TGC TGC TGT TGC TGG
15064941 TGC * 8 22/24 TGC TGG TAC TGC TGC TGC TGC TGC
15107221 CTT * 9 25/27 CTT CTT CTT CTT CTT CTA CTT CTT CCT
15147842 GGT * 8 22/24 GGT GGT GGA GGT GGC GGT GGT GGT
15182481 ACC * 7 19/21 ACC ACC ACC ACC ACC ACA TCC
15252745 ACA * 8 24/24 ACA ACA ACA ACA ACA ACA ACA ACA
15264307 GTG * 7 19/21 GTG GTG GAG GTG GTG GTG GAG
15274104 CCA * 7 20/21 CCA CCA CCA CCA CCA CCA TCA
15283162 AGG * 10 27/30 AGG AGG AGG AGG AGG AGG AGG AGG AAA AGT
15284342 GCA * 8 22/24 GCA GAA GCA GCA TCA GCA GCA GCA
15342474 TAT * 7 19/21 TAT TAT TAT TAT TAT GAT TAG
15354316 CGA * 7 19/21 CGA CGA GAA CGA CGA CGA CGA
15394585 TCT * 7 19/21 TCT TCT TCT TCT TCC TCC TCT
15418572 AGC * 8 22/24 AGC AGC AGC AGC AGC AGC AGA AAC
15443047 CCT * 7 19/21 CCT CCT CTT CAT CCT CCT CCT
15516035 AGA * 7 19/21 AGA AGA AGA AGA ATG AGA AGA
15530079 AAT * 12 34/36 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT ACC
15548641 TCC * 7 19/21 TCC TCA TCC TCC TCC TCC TCT
15555987 CCT * 7 19/21 CCT CCT CTT CAT CCT CCT CCT
15604377 GGT * 7 19/21 GGT GGT GGT GGT GGT GGA GGA
15608674 TAA * 7 20/21 TAA TAA TAA TAA TAA TAA TGA
15623084 GAG * 7 20/21 GAG GAG GAG GAG GTG GAG GAG
15628787 GAT * 7 20/21 GAT GAT GAT GAT GAT GAT GAG
15665400 CTT * 8 22/24 CTT CTT CTT TTT TTT CTT CTT CTT
15687317 TCC * 15 41/45 TCC TCT TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC GTC TCT
15740218 GGT * 7 19/21 GGT GGT GGT GGT GGT GGA GGA
15744515 TAA * 7 20/21 TAA TAA TAA TAA TAA TAA TGA
15758925 GAG * 7 20/21 GAG GAG GAG GAG GTG GAG GAG
15764627 GAT * 7 20/21 GAT GAT GAT GAT GAT GAT GAG
15837181 CTT * 7 19/21 CTT CTT CTT TTT CTT CTT TTT
15849542 AGC * 8 22/24 AGC AGC AAC AGC AGC AGC AGC TGC
15864299 AGA * 7 19/21 AGA AGA AGA AGA ATG AGA AGA
15878340 AAT * 12 34/36 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT ACC
15896902 TCC * 7 19/21 TCC TCA TCC TCC TCC TCC TCT
16062192 AAG * 7 19/21 AAG AAG AAG AAA AAT AAG AAG
16182622 TAA * 7 19/21 TAA TAA TTA TAA TAA TGA TAA
16204609 AAG * 7 19/21 AAG GAG AAA AAG AAG AAG AAG
16229035 GGA * 7 19/21 GGA GGA GGA GGT GGA GAA GGA
16231326 ATG * 7 19/21 ATG ATG AAG ACG ATG ATG ATG
16236358 TTG * 7 19/21 TTG TTG TTG CTG ATG TTG TTG
16264361 CCT * 7 19/21 CCT TCT CCT TCT CCT CCT CCT
16468133 ACC * 7 19/21 ACC TCC ACC ACC ACC GCC ACC
16480745 AAT * 12 33/36 AAT AAT CAT AAC AAT AAT AAT AAT AAT AAC AAT AAT
16579021 ATT * 11 31/33 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATC ATG
16586600 AGA * 7 19/21 AGA AGA AGA AGA AGA GGA AGG
16587050 TCA * 7 20/21 TCA TCA TCA TCT TCA TCA TCA
16593024 TAT * 10 28/30 TAT TAT TAT TAT TAT TAT TAT TAT CAT TAC
16597044 CTG * 7 19/21 CTG TTG CTG CTG TTG CTG CTG
16597274 GGT * 10 27/30 GGT GGT TGT GGT GGT AGT GGT GGT GGT GGA
16656690 TCT * 7 19/21 TCT TCA TCT TCT TCT TCT TCC
16685024 AGA * 8 22/24 AGA GGA AGA GGA AGA AGA AGA AGA
16835412 TCC * 15 41/45 TCC TCT TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC GTC TCT
16924277 CCA * 10 27/30 CCA CCA CCA CCA CTA CCA CCA CAA CCA CCC
16924515 CAG * 7 19/21 CAG CAG CAA CAG CAG CAA CAG
16928528 TAA * 10 28/30 TAA TGA TAA TAA TAA TAA TAA TAA TAA TAT
16934508 ATG * 8 22/24 ATG ATG ATG AAG ATG ATG ATG AAG
16934961 CTT * 7 19/21 CTT CCT CTT CTT CTT CTT CTC
16984757 AGA * 8 22/24 AGA GGA AGA GGA AGA AGA AGA AGA
-----------------------------------------------------------------------------------------
Total sequence length......................... 17004925
Minimum Tri-Nucleotide repeat units........... 7
Total number of repeats detected.............. 429
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 17 7 7 0 2 0 0 0 0 0 1 0 0
AAG 24 23 1 0 0 0 0 0 0 0 0 0 0
ATA 7 6 0 1 0 0 0 0 0 0 0 0 0
ATT 16 12 4 0 0 0 0 0 0 0 0 0 0
ATG 10 10 0 0 0 0 0 0 0 0 0 0 0
ATC 6 4 2 0 0 0 0 0 0 0 0 0 0
AGA 33 31 2 0 0 0 0 0 0 0 0 0 0
AGT 2 2 0 0 0 0 0 0 0 0 0 0 0
AGG 3 2 1 0 0 0 0 0 0 0 0 0 0
AGC 3 2 1 0 0 0 0 0 0 0 0 0 0
ACA 7 7 0 0 0 0 0 0 0 0 0 0 0
ACT 5 5 0 0 0 0 0 0 0 0 0 0 0
ACG 7 6 0 0 0 1 0 0 0 0 0 0 0
ACC 4 4 0 0 0 0 0 0 0 0 0 0 0
TAA 7 6 1 0 0 0 0 0 0 0 0 0 0
TAT 13 12 1 0 0 0 0 0 0 0 0 0 0
TAG 1 1 0 0 0 0 0 0 0 0 0 0 0
TAC 2 2 0 0 0 0 0 0 0 0 0 0 0
TTA 14 11 3 0 0 0 0 0 0 0 0 0 0
TTG 4 4 0 0 0 0 0 0 0 0 0 0 0
TTC 25 22 3 0 0 0 0 0 0 0 0 0 0
TGA 4 4 0 0 0 0 0 0 0 0 0 0 0
TGT 2 2 0 0 0 0 0 0 0 0 0 0 0
TGG 6 6 0 0 0 0 0 0 0 0 0 0 0
TGC 6 5 1 0 0 0 0 0 0 0 0 0 0
TCA 12 12 0 0 0 0 0 0 0 0 0 0 0
TCT 16 16 0 0 0 0 0 0 0 0 0 0 0
TCG 2 1 0 1 0 0 0 0 0 0 0 0 0
TCC 13 11 0 2 0 0 0 0 0 0 0 0 0
GAA 24 21 2 1 0 0 0 0 0 0 0 0 0
GAT 13 13 0 0 0 0 0 0 0 0 0 0 0
GAG 4 4 0 0 0 0 0 0 0 0 0 0 0
GAC 4 4 0 0 0 0 0 0 0 0 0 0 0
GTA 4 4 0 0 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 6 5 1 0 0 0 0 0 0 0 0 0 0
GTC 2 2 0 0 0 0 0 0 0 0 0 0 0
GGA 2 2 0 0 0 0 0 0 0 0 0 0 0
GGT 5 4 1 0 0 0 0 0 0 0 0 0 0
GGC 1 1 0 0 0 0 0 0 0 0 0 0 0
GCA 3 3 0 0 0 0 0 0 0 0 0 0 0
GCG 3 3 0 0 0 0 0 0 0 0 0 0 0
CAA 8 7 0 0 1 0 0 0 0 0 0 0 0
CAT 8 8 0 0 0 0 0 0 0 0 0 0 0
CAG 7 7 0 0 0 0 0 0 0 0 0 0 0
CAC 2 2 0 0 0 0 0 0 0 0 0 0 0
CTT 37 35 2 0 0 0 0 0 0 0 0 0 0
CTG 2 2 0 0 0 0 0 0 0 0 0 0 0
CTC 6 6 0 0 0 0 0 0 0 0 0 0 0
CGA 5 5 0 0 0 0 0 0 0 0 0 0 0
CGT 1 1 0 0 0 0 0 0 0 0 0 0 0
CGG 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 4 3 1 0 0 0 0 0 0 0 0 0 0
CCT 4 4 0 0 0 0 0 0 0 0 0 0 0
CCG 1 1 0 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
17 AAT + 7 ATA + 7 TAA + 16 ATT + 14 TTA + 13 TAT = 74
24 AAG + 33 AGA + 24 GAA + 37 CTT + 25 TTC + 16 TCT = 159
0 AAC + 7 ACA + 8 CAA + 1 GTT + 4 TTG + 2 TGT = 22
10 ATG + 4 TGA + 13 GAT + 8 CAT + 6 ATC + 12 TCA = 53
2 AGT + 4 GTA + 1 TAG + 5 ACT + 0 CTA + 2 TAC = 14
3 AGG + 2 GGA + 4 GAG + 4 CCT + 6 CTC + 13 TCC = 32
3 AGC + 3 GCA + 7 CAG + 0 GCT + 2 CTG + 6 TGC = 21
7 ACG + 5 CGA + 4 GAC + 1 CGT + 2 GTC + 2 TCG = 21
4 ACC + 4 CCA + 2 CAC + 5 GGT + 6 GTG + 6 TGG = 27
1 GGC + 3 GCG + 1 CGG + 0 GCC + 1 CCG + 0 CGC = 6
-----------------------------------------------------------------------------------------
-----------------------------------------------------------------------------------------
Tri-nucleotide repeats in C. elegans Chromosome-II complete sequence
Minimum tri-nucleotide repeating units = 7 (allowing 10% mismatch)
Total 1 sequences searched with a total of 17004925 bp length
Total 429 repeats covering 9229 / 10056 base pairs
Length distribution of all tri-nucleotide repeats
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
no. of repeat-units 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 >=40
total repeats 282 89 14 22 7 5 0 1 4 0 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Length distribution of all tri-nucleotide repeats
No. of repeat units> 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
total repeats--> 385 34 5 3 1 0 0 0 0 1 0 0
AAT 7 7 0 2 0 0 0 0 0 1 0 0
AAG 23 1 0 0 0 0 0 0 0 0 0 0
ATA 6 0 1 0 0 0 0 0 0 0 0 0
ATT 12 4 0 0 0 0 0 0 0 0 0 0
ATG 10 0 0 0 0 0 0 0 0 0 0 0
ATC 4 2 0 0 0 0 0 0 0 0 0 0
AGA 31 2 0 0 0 0 0 0 0 0 0 0
AGT 2 0 0 0 0 0 0 0 0 0 0 0
AGG 2 1 0 0 0 0 0 0 0 0 0 0
AGC 2 1 0 0 0 0 0 0 0 0 0 0
ACA 7 0 0 0 0 0 0 0 0 0 0 0
ACT 5 0 0 0 0 0 0 0 0 0 0 0
ACG 6 0 0 0 1 0 0 0 0 0 0 0
ACC 4 0 0 0 0 0 0 0 0 0 0 0
TAA 6 1 0 0 0 0 0 0 0 0 0 0
TAT 12 1 0 0 0 0 0 0 0 0 0 0
TAG 1 0 0 0 0 0 0 0 0 0 0 0
TAC 2 0 0 0 0 0 0 0 0 0 0 0
TTA 11 3 0 0 0 0 0 0 0 0 0 0
TTG 4 0 0 0 0 0 0 0 0 0 0 0
TTC 22 3 0 0 0 0 0 0 0 0 0 0
TGA 4 0 0 0 0 0 0 0 0 0 0 0
TGT 2 0 0 0 0 0 0 0 0 0 0 0
TGG 6 0 0 0 0 0 0 0 0 0 0 0
TGC 5 1 0 0 0 0 0 0 0 0 0 0
TCA 12 0 0 0 0 0 0 0 0 0 0 0
TCT 16 0 0 0 0 0 0 0 0 0 0 0
TCG 1 0 1 0 0 0 0 0 0 0 0 0
TCC 11 0 2 0 0 0 0 0 0 0 0 0
GAA 21 2 1 0 0 0 0 0 0 0 0 0
GAT 13 0 0 0 0 0 0 0 0 0 0 0
GAG 4 0 0 0 0 0 0 0 0 0 0 0
GAC 4 0 0 0 0 0 0 0 0 0 0 0
GTA 4 0 0 0 0 0 0 0 0 0 0 0
GTT 1 0 0 0 0 0 0 0 0 0 0 0
GTG 5 1 0 0 0 0 0 0 0 0 0 0
GTC 2 0 0 0 0 0 0 0 0 0 0 0
GGA 2 0 0 0 0 0 0 0 0 0 0 0
GGT 4 1 0 0 0 0 0 0 0 0 0 0
GGC 1 0 0 0 0 0 0 0 0 0 0 0
GCA 3 0 0 0 0 0 0 0 0 0 0 0
GCG 3 0 0 0 0 0 0 0 0 0 0 0
CAA 7 0 0 1 0 0 0 0 0 0 0 0
CAT 8 0 0 0 0 0 0 0 0 0 0 0
CAG 7 0 0 0 0 0 0 0 0 0 0 0
CAC 2 0 0 0 0 0 0 0 0 0 0 0
CTT 35 2 0 0 0 0 0 0 0 0 0 0
CTG 2 0 0 0 0 0 0 0 0 0 0 0
CTC 6 0 0 0 0 0 0 0 0 0 0 0
CGA 5 0 0 0 0 0 0 0 0 0 0 0
CGT 1 0 0 0 0 0 0 0 0 0 0 0
CGG 1 0 0 0 0 0 0 0 0 0 0 0
CCA 3 1 0 0 0 0 0 0 0 0 0 0
CCT 4 0 0 0 0 0 0 0 0 0 0 0
CCG 1 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes in all sequences
17 AAT + 7 ATA + 7 TAA + 16 ATT + 14 TTA + 13 TAT = 74
24 AAG + 33 AGA + 24 GAA + 37 CTT + 25 TTC + 16 TCT = 159
0 AAC + 7 ACA + 8 CAA + 1 GTT + 4 TTG + 2 TGT = 22
10 ATG + 4 TGA + 13 GAT + 8 CAT + 6 ATC + 12 TCA = 53
2 AGT + 4 GTA + 1 TAG + 5 ACT + 0 CTA + 2 TAC = 14
3 AGG + 2 GGA + 4 GAG + 4 CCT + 6 CTC + 13 TCC = 32
3 AGC + 3 GCA + 7 CAG + 0 GCT + 2 CTG + 6 TGC = 21
7 ACG + 5 CGA + 4 GAC + 1 CGT + 2 GTC + 2 TCG = 21
4 ACC + 4 CCA + 2 CAC + 5 GGT + 6 GTG + 6 TGG = 27
1 GGC + 3 GCG + 1 CGG + 0 GCC + 1 CCG + 0 CGC = 6
-----------------------------------------------------------------------------------------
Frequency distribution of repeats longer than 40 bp
3 AAT + 1 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 4
0 AAG + 0 AGA + 1 GAA + 0 CTT + 0 TTC + 0 TCT = 1
0 AAC + 0 ACA + 1 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 0 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 0
0 AGG + 0 GGA + 0 GAG + 0 CCT + 0 CTC + 2 TCC = 2
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 0
1 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 1 TCG = 2
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Sequence-wise distribution of tri-nucleotide repeats
-----------------------------------------------------------------------------------------
Total Repeats-longer Sequence Number
Repeats than 40 bp 1
-------------------------------------------
AAT 17 3 17
AAG 24 0 24
ATA 7 1 7
ATT 16 0 16
ATG 10 0 10
ATC 6 0 6
AGA 33 0 33
AGT 2 0 2
AGG 3 0 3
AGC 3 0 3
ACA 7 0 7
ACT 5 0 5
ACG 7 1 7
ACC 4 0 4
TAA 7 0 7
TAT 13 0 13
TAG 1 0 1
TAC 2 0 2
TTA 14 0 14
TTG 4 0 4
TTC 25 0 25
TGA 4 0 4
TGT 2 0 2
TGG 6 0 6
TGC 6 0 6
TCA 12 0 12
TCT 16 0 16
TCG 2 1 2
TCC 13 2 13
GAA 24 1 24
GAT 13 0 13
GAG 4 0 4
GAC 4 0 4
GTA 4 0 4
GTT 1 0 1
GTG 6 0 6
GTC 2 0 2
GGA 2 0 2
GGT 5 0 5
GGC 1 0 1
GCA 3 0 3
GCG 3 0 3
CAA 8 1 8
CAT 8 0 8
CAG 7 0 7
CAC 2 0 2
CTT 37 0 37
CTG 2 0 2
CTC 6 0 6
CGA 5 0 5
CGT 1 0 1
CGG 1 0 1
CCA 4 0 4
CCT 4 0 4
CCG 1 0 1
-------------------------------------------
429 10
-------------------------------------------
© Division of Biochemical Sciences, National Chemical Laboratory, Pune 411008, INDIA