Di-Nucleotide Repeats in Genomic Sequences
Di-Nucleotide Repeats in
C. elegans Chromosome-II complete sequence
Genomic Sequence:..
lcl|chr_II
Position Repeat Coverage Repeat
14490 GT * 11 20/22 GT GT GT GT GT GA GA GT GT GT GT
73146 GT * 14 26/28 GT GT AT GT GT GT GT GT GT GT GT GT GT GC
73304 TG * 12 22/24 TG TG TG TG TG TG TG TG TC AG TG TG
77144 TG * 13 24/26 TG TA TG TG TA TG TG TG TG TG TG TG TG
79551 AG * 10 18/20 AG AG GG GG AG AG AG AG AG AG
161212 TC * 10 18/20 TC TC TC TC TC TC TC TC TC GA
172732 AG * 11 21/22 AG AG AG AG AG AG AG AG AG AG TG
185971 GT * 10 18/20 GT GT GC CT GT GT GT GT GT GT
252332 TG * 11 20/22 TG TT TG TG TG TG TG TG TG TG GG
254500 AC * 10 19/20 AC TC AC AC AC AC AC AC AC AC
328669 AT * 14 26/28 AT AA AT AT AT AT AT AT AT AT AT AT AA AT
348347 TG * 20 36/40 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG GA AA
483359 GT * 23 42/46 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT CG GT GT TT GC GT
524532 TA *434 781/868 TA AT TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TC GA TA CA TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA TA TA TC GA TA CA TA AA TA TA TT TG TT AA AA AC CG GA AA AA AA CA CA CG AA AA TT AA GA AA AC AT TT TG AA AA AC GA AA AT CG GA AC GA AA TA AA TA AA AT AA AA TG AT GC GA AC GC GT TC TA TT GA AC GG GG CG CA TT TG
590542 GA * 10 18/20 GA AA AA GA GA GA GA GA GA GA
609180 AG * 10 18/20 AG AG AG AG AG AG AG AG AT TG
609899 CA * 13 24/26 CA TA CA CA CA CA CA CA CA CA CA CA AA
702717 AC * 13 25/26 AC AC AC AC AC AC AC AC AC AG AC AC AC
817698 TA * 11 21/22 TA TG TA TA TA TA TA TA TA TA TA
928217 CA * 23 42/46 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA TC TG
982572 AT * 11 20/22 AT AT AT AT AT TT AA AT AT AT AT
1143145 AT * 18 33/36 AT AC GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT
1179353 TG * 10 18/20 TG TG TG TG TG TG TG TG TG AC
1321350 TG * 11 20/22 TG GG TG TT TG TG TG TG TG TG TG
1352707 TA * 35 63/70 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG AG TG CA TG TG
1832387 AT * 22 40/44 AT AT AT AT AT AT AT AT AT AT GT AT AT AT AT AT AT AC CT GT AT AT
2079221 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AT TG
2143500 AT * 46 83/92 AT AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA CT GA AA CT GA
2143593 AT * 13 24/26 AT AT AT AC AT AT AT AT AT AT AC AT AT
2189578 GT * 22 40/44 GT AT TT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT AT GT GG
2210898 TG * 13 24/26 TG TG TG TG TG TG TG TG TG TG TG TG AA
2308376 AT * 10 18/20 AT AT AT AT AT GT AT GT AT AT
2317486 TA * 36 65/72 TA TA CA TA TA AA TA TA TA TA TA TA TA TA TA TA CA TA TA TA TA TT TA TA TA TA CA TA TA TA TA TT TA TA TA CA
2323225 TA * 18 33/36 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA CA GG
2380192 AT * 15 27/30 AT AT AT AT GT AT AT AT AT AT AT AT AT AT TA
2380222 TA * 12 22/24 TA TA TG TA TA TA TA TA TA TA TA TT
2380748 AT * 11 20/22 AT AT AT AT GT AT AT AT AT AT AA
2584300 AT * 16 29/32 AT AT AT AT AT AT AT AT AT AT AT AT AT AA TG AT
2587688 AT * 18 33/36 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AC AA
2711014 TC * 11 20/22 TC TC TC TC TC TC TC TC TA TT TC
2861969 AG * 10 18/20 AG AG AG AG AG AA AA AG AG AG
2895360 TA * 20 36/40 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TT AT
2895400 AT * 22 40/44 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA AT TT CG
2897810 TC *124 223/248 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC CC TC TC TC TC TC TC TC CC TC TC TC TC TC TC TC TC TC TC TC CC TC TC TC TC TC TC TC CC TC TC TC TT TC TC TA GT TG AA AG TG TA AA CA CT CT CT
2925620 CT * 10 18/20 CT TT AT CT CT CT CT CT CT CT
3036157 AT * 20 37/40 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT CA AT TT
3045284 TA * 10 18/20 TA TG TT TA TA TA TA TA TA TA
3111750 TA * 10 18/20 TA TA TA CA TA TA TA TA TA TG
3236391 AT * 12 22/24 AT AT AT AT AT AT AT AT AT AT AC AG
3243808 TA * 14 26/28 TA TA TA TA TA TA TA TA TA TA TA TA TT TT
3383433 TA * 39 71/78 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA AA AC AA TA AG AA
3388456 TA * 14 26/28 TA TA TA TA TA TA TA TA TA TA TA TA TT TT
3463950 GA * 10 18/20 GA GA GA CA GA GA GA GG GA GA
3544441 TG * 10 18/20 TG TG TG TG TG TG TG GT TG TG
3657394 GA * 10 18/20 GA GA GA GA GA GA GA GA GT GT
3763005 TC * 10 18/20 TC TC TC TC TC TC TC TC TG TG
3814640 CT * 10 18/20 CT AA CT CT CT CT CT CT CT CT
3872107 TC * 10 19/20 TC TC TC TC TC TC TC TC AC TC
3872360 TC * 13 24/26 TC TC TC TC TC TC TC TC TC TC TT CC TC
3872708 GA * 17 31/34 GA TA GA GA GA GA GA GA AA GA GA GA GA GA TA GA GA
3878598 TC * 10 19/20 TC TC TC TC TC TC TC TC CC TC
3879559 CT * 40 72/80 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT TG CT TC AC GT CT TT
3883203 TC * 11 20/22 TC TC CC TC TC TC TC TC TC TC TA
3915733 TG * 10 18/20 TG TG TG TG TG TG TC TG TG TT
3930470 AG * 10 18/20 AG AG AG AG AG AG AG AC TG AG
3930547 GA * 13 25/26 GA GA GA GA GA GA GA GA GA GA GA GA AA
3958304 AC * 10 18/20 AC AC AC AC AC AC AC AC AC TT
3996328 AT * 16 30/32 AT AT AT AT AT AT AT AT AT AT AT AT AT AA AT TT
4001168 TG * 10 18/20 TG TG TC TG TG TG TG TA TG TG
4049874 TG *111 201/222 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TT GT CC CA TC AC AG AC AA AT CA GA
4074503 TC * 10 18/20 TC TC TT TC TC TC TC TC TC TT
4100259 AT * 10 18/20 AT AT AT GT AT AT AT AC AT AT
4130954 TA * 20 37/40 TA TA TA TG TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TC
4211490 CA * 11 20/22 CA CA CA CA CA CA CG CA CA CA TA
4324230 GA * 11 20/22 GA GA GA GA GA GA GA GA GA AA GG
4325754 AG * 10 18/20 AG AT AG AG AG AG AG AG AG AC
4343957 AT * 11 20/22 AT AT AT AT TG AT AT AT AT AT AT
4383016 AG * 11 21/22 AG AG AG GG AG AG AG AG AG AG AG
4413111 AT * 10 18/20 AT CT AC AT AT AT AT AT AT AT
4430230 TG * 10 18/20 TG TG TG TG TG TG GG TG GG TG
4440392 TC * 10 18/20 TC AC TC TC TC TC TC TC TC CC
4506552 CA * 21 38/42 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CG GG GA
4509542 CA * 16 29/32 CA CA CA CA CA CA CA CA CA CA CA CA CA CT CT TA
4530077 GA * 13 24/26 GA GA GA GA GA GA GA GA TA GA GA GA TA
4533957 TC * 13 24/26 TC TC TC TC TC TC TG TC TC TC TC TG TC
4587410 AT * 13 25/26 AT AT AT AT AT AT AT AT AT AT AT AA AT
4731669 TG * 10 18/20 TG AG TG TG TG TG TG TA TG TG
4740812 TG * 10 18/20 TG TG TG TG GA TG TG TG TG TG
4794093 CT * 11 20/22 CT CT CT CT CT CT CT CT CT AT TT
4832150 GA * 11 20/22 GA AA GA GA GA GA GA GA GA GA TA
4841252 CT * 11 20/22 CT CT CT CT CT CT CC CT CC CT CT
4962533 TC * 11 21/22 TC TC TC TC TC TC TC TC TC TC TG
4962614 TC * 16 29/32 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TA AT
4975543 GA * 10 18/20 GA GA GA GA GA GT AA GA GA GA
5033656 AT * 10 18/20 AT AT AT AT AT GT AT AT AT AC
5068325 CA * 16 29/32 CA CA CA CA CA CA CA CA CA CA AA CA TA CA CA CT
5083878 AG * 10 18/20 AG GA AG AG AG AG AG AG AG AG
5115653 CA * 10 18/20 CA CA CA CA CA CA CA CA TA CT
5134040 CT * 11 21/22 CT CT CT CT CT CT CT CT CT CT CA
5197398 CA * 12 22/24 CA AA CA CA CA CA CA CA CA CA CA AA
5209677 CA * 22 40/44 CA GA CA CA CA CA CA CA CA CA CA CA CA CA CA TA CA CA CA CA AA AA
5254926 GA * 31 56/62 GA AA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GG GG GG GG GG
5268480 GT * 10 18/20 GT GT GT GT GT GT AT GT GA GT
5270675 AT * 13 24/26 AT AT AT AT GT AT AT AT AT AT AT AC AT
5312787 GT * 10 18/20 GT GT GT GT GT GT GT AT GT GC
5326525 AT * 12 22/24 AT AT AT AT AT AT AT AT AT AT TT GT
5432138 AT * 11 20/22 AT AT AT TT AT AA AT AT AT AT AT
5472579 TA * 11 21/22 TA TA TA TA TA TA TA TA TA TA TC
5578355 AT * 10 18/20 AT AT AT AT AT AT AT AA TT AT
5658507 AT * 21 38/42 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT GA AA
5695206 AG * 10 18/20 AG AG AA AG AG AG AG AG AA AG
5701269 TC * 11 20/22 TC TC TC TC TC TC TC TC TC GT TC
5954713 GA * 10 18/20 GA AA GA GA GA GA GA GA GA AA
6074470 TG * 13 24/26 TG TG TT TG TA TG TG TG TG TG TG TG TG
6234216 AT * 15 27/30 AT AA AT AA AT AT AT AT AT AT AT AT AT AT AA
6430443 TC * 26 48/52 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TT TT CT
6571818 AT * 30 54/60 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA TC CT TT TT
6625086 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG GA
6767715 GT * 10 18/20 GT GT GT GT GT GT GT GT GT AA
6768908 TC * 12 22/24 TC TC TC TC TA CC TC TC TC TC TC TC
6777636 TC * 10 18/20 TC TC TA TC TC TC TC AC TC TC
6801501 GT * 10 18/20 GT GT GT GT GT GT GT GT GT TC
6872229 GT * 11 20/22 GT GT GT GT GT GT GT AT GT GT GC
6878469 TC * 11 21/22 TC TC TC TC TC TC TC TC TC CC TC
6956491 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AA AG
7065126 CT * 10 18/20 CT CT CT CT CT CT CT CT CT GA
7086751 TC * 12 22/24 TC TC TC TC TC TC TC TC TC AC TC AC
7092658 AG * 12 23/24 AG AG AG AG AG AG AG AG AG AG AG AA
7110607 AG * 13 24/26 AG AG CA AG AG AG AG AG AG AG AG AG AG
7152925 TA * 12 22/24 TA TA TA TA TA TA TA TA TA TA TA AC
7162724 CT * 10 18/20 CT CT CT CT CT CT CT CT TT CA
7399601 AC * 10 19/20 AC TC AC AC AC AC AC AC AC AC
7527172 GA * 10 18/20 GA GA GA TA GA GA GA TA GA GA
7528353 CA * 10 18/20 CA CA CA CA TA TA CA CA CA CA
7565631 GT * 12 22/24 GT AT GT GT GT GA GT GT GT GT GT GT
7608963 TG * 25 46/50 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG GT GT
7657986 CT * 12 22/24 CT CT CT CT CC CT CT CT CT CT TT CT
7733447 AG * 12 22/24 AG AG AG AG AG AT AG AG AT AG AG AG
7785108 TC * 10 18/20 TC CC TA TC TC TC TC TC TC TC
7828975 AG * 44 80/88 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG TC TC AT AG TT AT
7852308 AT * 11 21/22 AT AT AT AT AT AT AT AT AG AT AT
8037899 AT * 13 24/26 AT GA AT AT AT AT AT AT AT AT AT AT AT
8061000 TG * 11 20/22 TG TG TG TA TG TG TG TG TG TG TC
8062898 AC * 10 18/20 AC AC AT AC AC AC AC AC AC AA
8381839 AT * 10 18/20 AT AT AT AA AT AT AT AT AT TT
8523557 AT * 10 18/20 AT AT AT AA AT AT AT AT AT TT
8659996 TG * 10 18/20 TG TG TG TG TG TG TG CA TG TG
8670819 TA * 10 18/20 TA TA TA TA TA TA TA TA CA AA
8897508 TG * 10 18/20 TG TG TG TG AG TG TG TG AG TG
8897924 CT * 10 18/20 CT AT CT CT CT CT CT CT CT CC
8918026 AC * 11 20/22 AC AC AC AC AC AC AC AC AA AA AC
8952489 AG * 13 25/26 AG AG AG AG AG AG AG AG AG AG AG AG AA
9055157 AC * 12 22/24 AC AC AC AC AC AC AC AC AC AC AC GT
9070253 TA * 10 18/20 TA TA TA TA TA TA TA TA TG GA
9082535 GT * 11 20/22 GT GT CT GT AT GT GT GT GT GT GT
9167728 TG * 10 18/20 TG TG TG TG TG TG TG TG TG CT
9224047 AC * 10 18/20 AC AC AC AC TC AC AC TC AC AC
9238390 AG * 10 19/20 AG AG AG AG AG AG AG AG AG AA
9243354 TC * 11 20/22 TC TC AT TC TC TC TC TC TC TC TC
9289129 CT * 10 18/20 CT GT CC CT CT CT CT CT CT CT
9371029 CA * 10 19/20 CA CA CA CA CA CA CA CA TA CA
9391825 AG * 11 20/22 AG AG AA AG AG AG AG AG AG AG AA
9435578 TG * 10 18/20 TG TG TA TG TG TG TC TG TG TG
9444901 CA * 10 18/20 CA CA CA CA CA CA CA AC CA CA
9446810 AC * 10 18/20 AC AC AC AC AC AC AC TC CC AC
9470941 AG * 10 18/20 AG GG AA AG AG AG AG AG AG AG
9485615 TA * 18 33/36 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA GA TT AA
9553587 TA * 24 44/48 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA CA TA AA GT
9567020 AG * 10 18/20 AG GG AA AG AG AG AG AG AG AG
9581694 TA * 18 33/36 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA GA TT AA
9657474 TA * 24 44/48 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA CA TA AA GT
9843615 AC * 11 20/22 AC AC AC AC AT AC GC AC AC AC AC
9851362 TC * 21 38/42 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC AG AG
9970675 AT * 10 19/20 AT AT AT AT AT AT AT AT AT AA
9971892 GA * 10 19/20 GA GA GA GA GA GA CA GA GA GA
9975407 AG * 12 22/24 AG AG AG GG AG AG AG AG AG AA AG AG
10275335 CT * 10 18/20 CT CT CT CT TT CT CT CT CT CG
10368871 CT * 10 18/20 CT CT CT CT CG TT CT CT CT CT
10378875 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CT CA CT
10547987 TG * 10 18/20 TG TG TG TG TG TA TG TG TG AG
10548414 AC * 11 20/22 AC AC AC AC AC GC AC AC AC GC AC
10553536 TG * 10 18/20 TG TC TG TG TG AG TG TG TG TG
10652015 TC * 11 20/22 TC TC TC TC TC TC TC TT TC TC TG
10712446 TG * 13 24/26 TG TG TG TG TG TA TG TG TG TG TG TG GG
10749474 AT * 10 18/20 AT AT AT AT AT AT AT AT AT TG
10750785 AG * 10 18/20 AG AG AG AG AG AG AG AG AG CT
10885803 TG * 10 19/20 TG TC TG TG TG TG TG TG TG TG
10894302 CT * 10 18/20 CT AT CT CT CT CT CT CT CA CT
10931931 CT * 17 32/34 CT GT CT CT CT CT CT CT CT CT CT CT CT CT CT CT AT
10933017 GA * 15 27/30 GA AC GA GA GA GA GA GA GA GA GA GA GA GA AA
10933398 GT * 19 35/38 GT GT GA GC GT GT GT GT GT GT GT GT GT GT GT GT GT GA GT
10996872 TC * 11 20/22 TC CA TC TC TC TC TC TC TC TC TC
11062813 TG * 11 20/22 TG TG TC TG TC TG TG TG TG TG TG
11067708 TG * 10 18/20 TG TA TG TG TG TG TG TG TG TT
11127569 CT * 12 22/24 CT TT CT CT CT CT CT CT CT CT CT TT
11128808 GT * 13 24/26 GT GT GT GT AT GT GT GT GT GT GT GT GG
11143028 TC * 10 18/20 TC TC TC TG TC TC TT TC TC TC
11157431 AC * 13 24/26 AC AC AC AC AC AC AT AC AC AC AC AC AA
11159654 TG * 10 19/20 TG TG TG TG TG TG TG TT TG TG
11188604 AC * 12 22/24 AC AC AC AC AC AC AC AC TC AC AC AT
11230050 AC * 12 22/24 AC AC AC AC AC AC AC AC TC AC AC AT
11276803 GA * 11 21/22 GA GA GA AA GA GA GA GA GA GA GA
11281454 AG * 10 19/20 AG AG AG AG AG AG AG AG AG AT
11286765 AG * 10 18/20 AG AG AG AA AG AG AG AG AG AA
11414934 GA * 11 21/22 GA GA GA AA GA GA GA GA GA GA GA
11419585 AG * 10 19/20 AG AG AG AG AG AG AG AG AG AT
11424896 AG * 10 18/20 AG AG AG AA AG AG AG AG AG AA
11581823 CA * 10 18/20 CA CA CA CA CA CA CA TA CA TA
11607061 CA * 11 20/22 CA CA CA CA CA CA CG CA CA CG CA
11641676 AT * 10 18/20 AT AT AT AT AT AT GT AT AT AG
11674012 TA * 11 20/22 TA TA TA TA TA TA TA TA TA TA CG
11708007 GA * 11 20/22 GA GA GA GA GA GA GA GA GA GA AT
11710723 GA * 10 18/20 GA CA GA GA GA GA GA GA GA AA
11819532 TG * 14 26/28 TG TG TG TA TG TG TG TG TG TG TG TA TG TG
11843961 TC * 10 18/20 TC TC TT TC TC TC TC TC TC TA
11876239 CT * 10 18/20 CT CT CT CT GC CT CT CT CT CT
11955608 GA * 27 49/54 GA CA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA CA AA AA GT
11960143 GA * 12 22/24 GA AA GA GA GA GA GA GA GG GA GA GA
11962757 TG * 17 31/34 TG TG TA TG TG TG TG TG TG TG TG TG TG TG TG TG GA
11976238 AG * 10 18/20 AG AG AG AG TG AG TG AG AG AG
12015391 AG * 11 20/22 AG AG AG AG AG AA AG AG AG AG AC
12028511 GT * 11 20/22 GT GT GT GT GT GT GT GT CT GC GT
12149341 TA * 31 57/62 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG CA TT TA AC
12180610 GA * 10 18/20 GA GA GA GA GT GT GA GA GA GA
12180674 CT * 11 20/22 CT CT CT CT CT CT CT CA GT CT CT
12180736 CT * 10 19/20 CT CT CT CT CT CT CT CT CT TT
12228093 AT * 13 24/26 AT AT AT AT AT AT AT AT AT AT AT AA CT
12252413 AC * 11 20/22 AC AC AC AC AC AC AC AC AC AA AT
12281837 TC * 10 18/20 TC TC TC TC TC TC TC TC TC GT
12283659 GT * 10 18/20 GT CT GT GT GT GT GT GT GT GG
12284401 GT * 14 26/28 GT GT GT GT GT GT GC GT GT GT GT GT GT GC
12284500 GA * 10 18/20 GA GA GA GA GA GA GA GC AA GA
12284702 CA * 13 24/26 CA CA CA CA AA CA GA CA CA CA CA CA CA
12284887 AG * 10 18/20 AG AG AG AG AA AG AG AG AG GG
12307704 TA * 12 22/24 TA TT TA TA TA TA TA TA TA TA TA TT
12307729 AT * 30 54/60 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT CA AT AT AT CA AT AT AC CT
12321443 AG * 12 23/24 AG AG AG AG AT AG AG AG AG AG AG AG
12372544 AG * 12 23/24 AG AG AG AG AT AG AG AG AG AG AG AG
12417078 AC * 10 18/20 AC AC AC AC AC AC GC TC AC AC
12465249 CT * 11 20/22 CT CT CT CT CT CT CT CT CT CT AA
12474199 TG * 10 18/20 TG TA TG TA TG TG TG TG TG TG
12509976 AG * 10 18/20 AG AA AA AG AG AG AG AG AG AG
12611309 TA * 10 18/20 TA TT TA TA TA AA TA TA TA TA
12619174 TA * 11 20/22 TA TA TA GA TA TA TA CA TA TA TA
12619706 TA * 11 20/22 TA TA GG TA TA TA TA TA TA TA TA
12627317 TC * 25 45/50 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TG CC AC AG
12653648 TA * 20 36/40 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA CA TA TT TC TT
12670019 AT * 16 29/32 AT AT GC AT AT AT AT AT AT AT AT AT AT AT AT AG
12670563 AT * 26 48/52 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AC AC AG
12719725 TC * 10 18/20 TC TC TC TC TC TC TC TT TT TC
12769788 TA * 11 20/22 TA TA TA GA TA TA TA CA TA TA TA
12770320 TA * 11 20/22 TA TA GG TA TA TA TA TA TA TA TA
12777931 TC * 25 45/50 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TG CC AC AG
12804265 TA * 18 33/36 TA TA TA TA TA GA TA TA TA TA TA TA TA TA TA CA TA TT
12820641 AT * 16 29/32 AT AT GC AT AT AT AT AT AT AT AT AT AT AT AT AG
12821185 AT * 31 56/62 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AC AC AG TA
12868393 TA * 10 19/20 TA TA TA TA TA TA TA TA AA TA
13189640 AT * 12 22/24 AT TT AA AT AT AT AT AT AT AT AT AT
13215190 CA * 10 18/20 CA TA CA CA CA CA CA CA CA AA
13217856 AT * 20 37/40 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC GT TT
13218064 CA * 15 27/30 CA CA CA CA CA CA CA CG CA CA CA CA CA CA TG
13220185 AT * 10 18/20 AT AT CC AT AT AT AT AT AT AT
13226722 AT * 23 42/46 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AG AC TT
13226930 CA * 15 27/30 CA CA CA CA CA CA CA CG CA CA CA CA CA CA TG
13299497 TA * 16 29/32 TA TA TA TA TA TA TA TA TA TA TA TA TA TT TT AA
13502895 AG * 11 20/22 AG AG AG AG AG AG AG AG AG TG AC
13526281 CA * 10 18/20 CA TG CA CA CA CA CA CA CA CA
13526906 CA * 10 18/20 CA CA CG GA CA CA CA CA CA CA
13528389 GA * 13 24/26 GA GA GA GA GA GA GA GA GA CA TA GA GA
13572425 TA * 16 29/32 TA TA TA TA TA TA TA TA TA TA TA TA TA TT TT AA
13709306 CA * 10 18/20 CA TG CA CA CA CA CA CA CA CA
13709932 CA * 10 18/20 CA CA CG GA CA CA CA CA CA CA
13711415 GA * 13 24/26 GA GA GA GA GA GA GA GA GA CA TA GA GA
13727154 CA * 10 18/20 CA TA CA CA CA CA CA CA CA AA
13729821 AT * 20 37/40 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC GT TT
13730029 CA * 15 27/30 CA CA CA CA CA CA CA CG CA CA CA CA CA CA TG
13732150 AT * 10 18/20 AT AT CC AT AT AT AT AT AT AT
13793094 AT * 12 22/24 AT TT AA AT AT AT AT AT AT AT AT AT
13846706 AT * 10 19/20 AT AT AT AT AT AT AT AT AT TT
13898532 GA * 10 18/20 GA GA GA GA GA GA GA GA GA AT
13980971 CT * 12 22/24 CT CT CT CT CT CT CT CT TT TT CT CT
14002003 GA * 10 18/20 GA GA GA GA GA GA GA GA GA AT
14087386 CT * 12 22/24 CT CT CT CT CT CT CT CT TT TT CT CT
14116197 TG * 13 24/26 TG TG TG TG TG CG CG TG TG TG TG TG TG
14146735 GA * 50 91/100 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA AG GG CG CC AT
14148373 AC * 10 18/20 AC AC AC AC AC AC AT AC AC AT
14198411 TA * 23 43/46 TA TA TA TA CA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TC
14225421 CT * 12 22/24 CT CT CT CT CT CT CT CT TT TT CT CT
14254232 TG * 13 24/26 TG TG TG TG TG CG CG TG TG TG TG TG TG
14284770 GA * 50 91/100 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA AG GG CG CC AT
14286408 AC * 10 18/20 AC AC AC AC AC AC AT AC AC AT
14355979 GA * 26 48/52 GA GA GA NA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GN GN GN
14356047 GA * 12 22/24 GA GA GA GA GA GA GA GA GA GA GA AG
14407637 TA * 23 43/46 TA TA TA TA CA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TC
14427279 CA * 12 22/24 CA CA CA CA CA CA CA CA CA CA AA AA
14477471 TA * 14 26/28 TA TA TA TA TA TA TA TA TA TA TA TA TG TT
14505650 AG * 10 18/20 AG AG AA AG AA AG AG AG AG AG
14516164 AT * 11 20/22 AT AT GT AT GT AT AT AT AT AT AT
14533455 TC * 10 18/20 TC TC TC TC TC TC TC TC TA TT
14614129 AC * 10 19/20 AC AC AC AC AC AC AC AC AC CC
14629677 CA * 11 20/22 CA CA CA CA CA CA CA CA CA CT CC
14636326 TG * 10 19/20 TG TG TG TG TG TG TG TG TG GG
14636668 GA * 10 18/20 GA GA GA GA GA GA GA GA GT GC
14645685 AT * 11 20/22 AT AT AT AT AT AT AT AT AT AC AG
14647263 TA * 18 33/36 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT GA AA
14674206 GA * 14 26/28 GA GA GA GA GA GA GA GA GG GA GG GA GA GA
14695278 TA * 16 29/32 TA TG TA TT TA TA TA TA TA TA TA TA TA TA TA TG
14705233 GA * 11 20/22 GA GG GA GA GA GA GA GA GA GA AA
14733796 AT * 13 24/26 AT AT AT AT AT AT AT AT AT AT AT AT TA
14737449 AG * 10 18/20 AG AG AG GG AG AG AG AG AG TG
14748295 GT * 12 22/24 GT GT GT GT GT GT GT GT GT GT GT CG
14813553 TA * 23 43/46 TA TA TA TA CA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TC
14860447 TA * 14 26/28 TA TA TA TA TA TA TA TA TA TA TA TA TG TT
14888618 AG * 10 18/20 AG AG AA AG AA AG AG AG AG AG
14902809 AG * 10 18/20 AG AG AA AG AA AG AG AG AG AG
14947561 AT * 11 20/22 AT AT GT AT GT AT AT AT AT AT AT
14964846 TC * 10 18/20 TC TC TC TC TC TC TC TC TA TT
15046764 AT * 20 37/40 AT TT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA CT AT AT
15050223 TA * 17 31/34 TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA AT
15074265 AT * 13 24/26 AT AT AT AT AT AT AT AT AT AT AC TT AT
15114060 TA * 11 20/22 TA TA TA TA TA TA TA TA TA TT TC
15183606 AT * 12 22/24 AT AA AT AT AT AT AT AT AT AC AT AT
15184309 AT * 12 22/24 AT AC AT AT GT AT AT AT AT AT AT AT
15191305 CA * 15 28/30 CA CA CA CA CA CA CA CA CA CA CA CA CA CC AA
15245010 AG * 13 24/26 AG AG AG AG AG AG AG AG AT AG AG AG AA
15253981 CT * 15 27/30 CT CT CT CT CT CT CT CT CT CT CG CT CT TT TT
15274161 TC * 11 21/22 TC TC TC TC TC TC TC TT TC TC TC
15280117 AT * 10 18/20 AT AT AA AT AT AT AT AT AC AT
15283639 CT * 13 24/26 CT CT TT CT CT CT CT CT CT CA CT CT CT
15339854 TC * 10 18/20 TC TC TC TC TG TC TC TC TA TC
15361064 CA * 13 24/26 CA CA CA CA CA CA CA CA CA CA CA CA TT
15370617 AT * 11 21/22 AT AT AT AT AT AA AT AT AT AT AT
15391866 TG * 10 19/20 TG GG TG TG TG TG TG TG TG TG
15399580 TA * 13 25/26 TA TA TA TA TA TA TA TA TA TA TA TA TT
15416749 AT * 13 25/26 AT AT AT AT AT AT AT AT AT AT AT AT AC
15421962 CT * 25 46/50 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT TT TC CA
15633829 GT * 10 18/20 GT GT GT GT GT GT GT GT GT TG
15662524 CA * 10 19/20 CA CA CA CA CA CA CA CA CA CT
15769668 GT * 10 18/20 GT GT GT GT GT GT GT GT GT TG
15822684 GT * 10 18/20 GT GT GT GT GT GT GT TT GT CT
15833728 AT * 10 18/20 AT AT AT AT AT AT AT AT AT TA
15840854 TC * 12 22/24 TC TA TC TC TC TC TC TC AC TC TC TC
15843753 GT * 10 18/20 GT GT GT GT GT GT AT GT GT GA
15848647 GA * 10 18/20 GA AA AA GA GA GA GA GA GA GA
15851916 GT * 12 22/24 GT GT GT GT GT GT GT GT AT GT GT CT
15859015 GT * 12 23/24 GT GT GC GT GT GT GT GT GT GT GT GT
15939214 GT * 10 18/20 GT GT GT GT GT GT GT GT GT AA
16133558 AT * 12 23/24 AT AT AT GT AT AT AT AT AT AT AT AT
16160093 TG * 11 20/22 TG TG TT TG TG TG TG TG TG TT TG
16294443 TG * 10 18/20 TG TG TG TG TG TG TG TG TG AA
16326403 GT * 10 18/20 GT TT GT GT GT GT GT GT GT GA
16326465 TC * 11 20/22 TC TC TC AC AC TC TC TC TC TC TC
16375271 TG * 11 20/22 TG TG TT TG TG TG TG TG TG TT TG
16425439 TC * 26 48/52 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TT TC TA TA TT
16451734 CT * 10 18/20 CT CT CT CT CT CT CT CT CT TG
16453740 CT * 15 27/30 CT CT CT CT CT CT CT CT CT CT CT CT CT TG GT
16470821 TC * 10 18/20 TC TC TC TC TC TC TC TC TC AA
16473436 AC * 12 23/24 AC AC AC AC AC AC AC AC AC AC AC AA
16499880 GT * 10 18/20 GT TT GT GT GT GT GT GT GT GA
16499942 TC * 11 20/22 TC TC TC AC AC TC TC TC TC TC TC
16578158 CA * 10 19/20 CA CA GA CA CA CA CA CA CA CA
16591947 AC * 11 20/22 AC AT AC AC AC AC AC AG AC AC AC
16628354 TG * 11 20/22 TG TA TG TG TG TA TG TG TG TG TG
16682645 TA * 55 99/110 TA TA TA TA TA TA AA TA TA TA TA TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA CA TT TA TA TA TA TA TA TA TA TA TA TA TA TA TA CA TA TA TA TA TA TA AA AT AA AA CA
16707669 AC * 12 23/24 AC AC AC AC AC AC AC AC AC AC AC AA
16741430 CT * 10 18/20 CT CT CT CT CT CT TT CT CT AT
16763102 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG AT
16800968 AG * 10 18/20 AG AA AG AG AG AG AG AG AT AG
16834054 TG * 11 20/22 TG TG TG TG TG TG TG TG TG TG AT
16893203 CA * 11 20/22 CA CA CA CA CA TA CA CA CA TA CA
16929605 TG * 11 20/22 TG TG CG TG TG TC TG TG TG TG TG
16950391 AC * 12 23/24 AC AC AC AC AC AC AC AC AC AC AC AA
16982376 TA * 56 101/112 TA TA TA TA TA TA AA TA TA TA TA TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA CA TA TA TA TA TA TA AA AT AA AA CA AA
-----------------------------------------------------------------------------------------
Total sequence length......................... 17004925
Minimum Di-Nucleotide repeat units............ 10
Mismatch allowed ............................. 10%
Total number of repeats detected.............. 373
-----------------------------------------------------------------------------------------
Length distribution of Di-Nucleotide Repeats
No. of Repeat Units AT TA AG GA AC CA TG GT TC CT GC CG
10 to 14 42 22 36 27 23 23 39 24 32 24 0 0
15 to 19 8 9 0 2 0 6 1 1 1 3 0 0
20 to 24 8 8 0 0 0 3 1 2 1 0 0 0
25 to 29 1 0 0 2 0 0 1 0 4 1 0 0
30 to 34 3 1 0 1 0 0 0 0 0 0 0 0
35 to 39 0 3 0 0 0 0 0 0 0 0 0 0
40 to 44 0 0 1 0 0 0 0 0 0 1 0 0
45 to 49 1 0 0 0 0 0 0 0 0 0 0 0
50 and more 0 3 0 2 0 0 1 0 1 0 0 0
-----------------------------------------------------------------------------------------
Total 63 46 37 34 23 32 43 27 39 29 0 0
-----------------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
63 AT + 46 TA = 109
37 AG + 34 GA + 29 CT + 39 TC = 139
27 GT + 43 TG + 32 CA + 23 AC = 125
0 GC + 0 CG = 0
-----------------------------------------------------------------------------------------
Di-Nucleotide repeats in C. elegans Chromosome-II complete sequence
Minimum di-nucleotide repeating units = 10 (allowing a maximum of 10% mismatch)
Total 373 repeats covering 10413 / 11412 base pairs
Length distribution of all di-nucleotide repeats
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
no. of repeat-units 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 >=50
total repeats 143 70 39 31 9 9 10 4 7 1 8 3 4 6 2 4 4 1 0 0 2 3 0 0 0 1 1 0 0 1 1 0 0 0 1 0 1 0 0 0 7
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Length distribution of different di-nucleotide repeat classes
no. of repeat-units 10-14 15-19 20-24 25-29 30-34 35-39 40-44 45-49 >=50
total repeats--> 292 31 23 9 5 3 2 1 7
AT 42 8 8 1 3 0 0 1 0
TA 22 9 8 0 1 3 0 0 3
AG 36 0 0 0 0 0 1 0 0
GA 27 2 0 2 1 0 0 0 2
AC 23 0 0 0 0 0 0 0 0
CA 23 6 3 0 0 0 0 0 0
TG 39 1 1 1 0 0 0 0 1
GT 24 1 2 0 0 0 0 0 0
TC 32 1 1 4 0 0 0 0 1
CT 24 3 0 1 0 0 1 0 0
GC 0 0 0 0 0 0 0 0 0
CG 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------
Sequence-wise distribution of di-nucleotide repeats
Sequence AT TA AG GA AC CA TG GT TC CT GC CG
--------------------------------------------------------------------------------------------------------
lcl|chr_II -( 17004925 bp) 63 46 37 34 23 32 43 27 39 29 0 0
--------------------------------------------------------------------------------------------------------
Total ( 17004925 bp) 63 46 37 34 23 32 43 27 39 29 0 0
--------------------------------------------------------------------------------------------------------
-------------------------------------------------------------------------------
Frequency distribution of different di-nucleotide repeat classes
63 AT + 46 TA = 109
37 AG + 34 GA + 29 CT + 39 TC = 139
27 GT + 43 TG + 32 CA + 23 AC = 125
0 GC + 0 CG = 0
-------------------------------------------------------------------------------
-------------------------------------------------------------------------------
Frequency distribution of di-nucleotides repeated for 20 times or more
--repeats longer than 40 bp
13 AT + 15 TA = 28
1 AG + 5 GA + 2 CT + 6 TC = 14
2 GT + 3 TG + 3 CA + 0 AC = 8
0 GC + 0 CG = 0
-------------------------------------------------------------------------------
Total repeats >= 40 bp = 50
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© Division of Biochemical Sciences, National Chemical Laboratory, Pune 411008, INDIA