Tetra-Nucleotide Repeats in Genomic Sequences
Tetra-Nucleotide Repeats in
C. elegans Chromosome-I complete sequence
Genomic sequence...
lcl|worm_chr_I
Position Repeat Coverage Repeat
69454 AAAT * 5 18/20 AAAT ATAT AAAT AAAT AAAA
112212 TCTG * 5 18/20 TCTG TCTG TCTG TTTG TGTG
244023 AGGC * 5 18/20 AGGC AGGC AGGG AGGC AGTC
258569 GGTA * 5 18/20 GGTA GGTA GGTA GGCA CGTA
258708 AGGT * 5 18/20 AGGT AGGT AGGT AGGT ACGG
446506 AGAT * 5 18/20 AGAT AGAT ATAT AGAT ATAT
545472 GCCT * 5 18/20 GCCT ACCT GCCT ACCT GCCT
547335 GTAG * 5 18/20 GTAG GCAG GTAG GCAG GTAG
547368 TAGG * 6 22/24 TAGG CAGG TAGG CAGG TAGG TAGG
547568 CAGG * 5 18/20 CAGG TAGG CAGG CAGG CAGA
547735 GCAG * 6 22/24 GCAG GCAG GTAG GTAG GCAG GCAG
548023 GGTA * 5 18/20 GGTA GGCA GGTA GGTA GGCA
548258 CAGG * 5 18/20 CAGG TAGG CAGG CAGG TAGG
566128 GGCA * 5 18/20 GGCA TGTA GGCA GGCA GGCA
566797 TTTG * 5 18/20 TTTG TGTT TTTG TTTG TTTG
597290 AATG * 6 22/24 AATG AATG AATG AATG AATG GATA
611456 GAGG * 5 18/20 GAGG GAGG GAGA GAGA GAGG
615084 GAGG * 5 18/20 GAGG GAGG GAGA GAGG GAGA
717134 TAGG * 5 18/20 TAGG CAGG TAGG CAGG TAGG
717311 AGGC * 5 18/20 AGGC AGGT AGGC AGGC ATGC
762053 GAGT * 5 19/20 GAGT GAGT GAGT GAGT GTGT
786455 TTAT * 5 18/20 TTAT GTAT ATAT TTAT TTAT
943798 AAAT * 5 18/20 AAAT AAAT AAAA AAAT AGAT
1010875 ATTT * 5 18/20 ATTT ATAT ATTT TTTT ATTT
1011708 TTAA * 5 19/20 TTAA TTAA TTAA TTCA TTAA
1019719 TAAA * 5 19/20 TAAA TAAA TAAA TAAA TAAT
1020307 TTAT * 5 19/20 TTAT TTAT TTAT TTAT TTAA
1023108 AATA * 5 19/20 AATA AATA AATA CATA AATA
1047389 TGGT * 6 23/24 TGGT TGGT TGGT TGGT TGGT TGGC
1154069 AAAT * 5 18/20 AAAT AAAT AAAA AAAC AAAT
1174040 CTGC * 5 18/20 CTGC CTGC CTGC CTGC CGCC
1177404 ACCT * 5 18/20 ACCT ACCT ACCT ACCT TCCA
1194163 TAGG * 5 18/20 TAGG TAGG CATG TAGG TAGG
1286828 GCCT * 5 18/20 GCCT GCAT GCCT GCAT GCCT
1287536 GCCT * 5 18/20 GCCT GCCT ACCT ACCT GCCT
1403260 CTTT * 5 18/20 CTTT CTTT TTTT CTTT CTTA
1542321 GCAG * 5 18/20 GCAG GTAG GCAG GCAG GCAT
1580500 GTAG * 5 18/20 GTAG GTAG GTAG GCAG GCAG
1591336 AGGT * 5 18/20 AGGT AGGC ATGT AGGT AGGT
1592078 GCCT * 6 22/24 GCCT GCCT GCCT GCCT ACCT ACCT
1683725 GGAA * 5 18/20 GGAA GGAA GGAA GGAA GGCT
1723347 AGGC * 8 29/32 AGGC AGGC AGGC ATGC AGGC AAGC AGGC AAGC
1815690 GGTA * 6 22/24 GGTA GGTA CGTA GGTA GGTA GGCA
1877196 GCAG * 5 18/20 GCAG GCAG GCAT GTAG GCAG
1910487 GCTG * 5 18/20 GCTG GCTG GCTG ACTG ACTG
1921723 AGGC * 5 18/20 AGGC AGGC AGGC ATGT AGGC
1922722 TGCC * 5 18/20 TGCC TGCC TGCA TGCC TACC
2037335 AGGC * 6 22/24 AGGC ACGA AGGC AGGC AGGC AGGC
2154097 GGAA * 5 18/20 GGAA GGAA GAAA GGAA GAAA
2199557 TTGG * 5 18/20 TTGG TTGG TTGG TTGG TGGT
2219119 TTTA * 5 19/20 TTTA TTTA TTTA TTTA TTTT
2242647 TCAA * 5 18/20 TCAA GAAA TCAA TCAA TCAA
2356482 GCCT * 6 22/24 GCCT TCAT GCCT GCCT GCCT GCCT
2372935 TTTG * 5 18/20 TTTG TTTG TTTG TGTG TGTG
2391584 TTTC * 5 18/20 TTTC TTTC ATTT TTTC TTTC
2396398 AAAT * 5 19/20 AAAT AAAT AAAT AAAT AAGT
2400375 ATTT * 5 18/20 ATTT CTTT GTTT ATTT ATTT
2407977 TCTT * 5 18/20 TCTT TCTT TCTA TCTC TCTT
2441583 CATC * 9 33/36 CATC CATC CATC CATC CATC CATC CATC CATC CCCT
2521945 AATT * 5 18/20 AATT ATTC AATT AATT AATT
2537524 TTTA * 5 18/20 TTTA ATTA ATTA TTTA TTTA
2573784 TTAT * 6 22/24 TTAT TGAT TTAT TCAT TTAT TTAT
2610894 TATT * 5 18/20 TATT CATT TATT TATT TTTT
2745445 ATTT * 5 18/20 ATTT TTTA ATTT ATTT ATTT
2834727 CTCA * 5 19/20 CTCA CTCT CTCA CTCA CTCA
2834936 AACG * 6 22/24 AACG AACG AACG AACG AACG ACGG
2920856 TACC * 5 19/20 TACC TACC TACA TACC TACC
2988037 TTCC * 5 18/20 TTCC ATCC ATCC TTCC TTCC
2988235 ATCC * 5 19/20 ATCC TTCC ATCC ATCC ATCC
2988282 TCCA * 5 18/20 TCCA TCCA TCCA TCGA TCGA
3036250 TTGG * 5 19/20 TTGG TTGG TTGG TTGG ATGG
3039640 AAAG * 5 18/20 AAAG AATG AAAG CAAG AAAG
3068413 TCCT * 5 18/20 TCCT TCCT TGCT TCCT TCAT
3148287 TATT * 5 18/20 TATT TATT TATT TATT AAAT
3158126 TAAT * 5 18/20 TAAT TAAT GAAA TAAT TAAT
3191010 TCCG * 6 22/24 TCCG TCCG TCCG TCCG TCCG CGCG
3204326 TTTC * 5 18/20 TTTC ATTC TTTC TTTT TTTC
3499377 TTTC * 5 18/20 TTTC CTTC TTTC TTTC TGTC
3512201 TAAT * 5 19/20 TAAT TAAT TAAT TAAT TAAA
3518495 ATTT * 6 22/24 ATTT ATTT ATTT AATT ATTT TTTT
3523554 GGTA * 10 36/40 GGTA GATA GGTA GGTA GGTA GGTA GGTA CGTA GGAA AGTA
3525201 AATA * 6 22/24 AATA AATA AATA AATA AGTT AATA
3538919 TTAC * 5 18/20 TTAC TTAC TTAC TTAC TAAG
3605240 TGCC * 6 22/24 TGCC TGCC TGCC TACC TGCC TACC
3713988 TTGT * 5 18/20 TTGT TTGT TTGT TTGT CTGC
3748075 ATAA * 5 18/20 ATAA ATAA ATAA ATAA ATTG
3781907 GTAG * 5 18/20 GTAG GTAG GCAT GTAG GTAG
3786406 TATT * 7 26/28 TATT TATT TATT TATT TATT TATT CATC
3825594 TCTT * 5 18/20 TCTT TCTT TCTG TTTT TCTT
3844311 TAAT * 5 18/20 TAAT TAAT TAAT GAAT TACT
3845189 TAAT * 5 18/20 TAAT TAAT TAAT GAAT TACT
3851857 GTAG * 6 22/24 GTAG GAAG GTAG GTAA GTAG GTAG
3919696 TAAA * 6 22/24 TAAA TAAA TAAA TAAA TTAA TTAA
3992233 AAAT * 5 18/20 AAAT GAAT AAAA AAAT AAAT
3996649 TTAA * 5 18/20 TTAA TTAA TTAA TTAA TGTA
4159977 TTGA * 5 18/20 TTGA TTGA TTGA TAGA TTTA
4323985 TAAT * 5 18/20 TAAT TAAT TAAT TGAT TCAT
4390230 TGTA * 6 22/24 TGTA TGTA TGTA TGTG TGTA TTTA
4396229 TAAA * 5 18/20 TAAA AAAA TAAA TAGA TAAA
4429051 TATT * 5 19/20 TATT TATT TATT TATT TTTT
4501951 ATTT * 5 18/20 ATTT ACTT ATTT TTTT ATTT
4509161 AAAG * 5 18/20 AAAG AAAA AATG AAAG AAAG
4565631 AAAT * 5 18/20 AAAT AAAT AAAT AAAT AAGA
4688200 TATT * 5 18/20 TATT TATT TCTT TATT TCTT
5016370 AGAA * 5 18/20 AGAA AGAA AGAA AAAA CGAA
5027085 AAAG * 5 18/20 AAAG AAAG AAAC GAAG AAAG
5027455 AAAG * 5 18/20 AAAG AAAG AGAA AAAG AAAG
5027479 AAAG * 5 18/20 AAAG AAAG AAGA AAAG AAAG
5027515 AAAG * 5 18/20 AAAG AAAG AAGA AAAG AAAG
5067287 TATT * 5 18/20 TATT TATT TATT TATT TTTC
5222438 TAAA * 5 18/20 TAAA TAAA TAAA TAGA AAAA
5244457 AAAT * 5 18/20 AAAT AAAT GAAT AAAT AAAG
5484306 GGGA * 5 18/20 GGGA GGGA TGGA GGGA TGGA
5602974 AGAA * 5 18/20 AGAA AAGA AGAA AGAA AGAA
5742925 AATA * 5 19/20 AATA AATA AATA AATA AACA
5781559 TTAT * 5 18/20 TTAT TTTT TTAT TTAT TTGT
5799224 CTAC * 5 18/20 CTAC CTAC CTAC TTGC CTAC
5821766 AGAA * 5 18/20 AGAA AAAA AGAA AAAA AGAA
5830373 ATTG * 5 18/20 ATTG ATTT ATTG ATCG ATTG
5858034 ATAA * 5 18/20 ATAA ATAA ATAA ATAA TAAA
5989370 AAAT * 5 18/20 AAAT TAAA AAAT AAAT AAAT
6063372 CTAT * 6 22/24 CTAT CTAT CTAT GTAT GTAT CTAT
6126858 GATG * 5 18/20 GATG GATG GATG GATC GACG
6190331 TAGA * 5 18/20 TAGA TATA TAGA TATA TAGA
6292268 GAAA * 5 18/20 GAAA GAAA GAAA GAAA GGGA
6300945 AAGA * 5 18/20 AAGA AAGA GAGA AAGA GAGA
6425885 AAAT * 5 18/20 AAAT AAAC AAAT AAAT AATT
6531132 TTTC * 5 19/20 TTTC TTTC TTTC TTTC TTTT
6579054 TCAT * 5 18/20 TCAT TCAT TCAT TCAT TTGT
6653739 ATGA * 6 22/24 ATGA ATGA ATGA ATGA ATGA ACAA
6778765 AAGT * 6 22/24 AAGT AAGT AAGT AAGT AAGT AACC
6779838 AAGT * 6 22/24 AAGT AAGT AAGT AAGT AAGT AACC
6842211 TTGA * 5 18/20 TTGA TTGA TTGA TTTC TTGA
6897651 AAAT * 5 18/20 AAAT ATAT AAAT ATAT AAAT
7093916 AAGG * 5 18/20 AAGG AAAG AAGG AAGG AAAG
7131932 AAAT * 5 18/20 AAAT AAAT GAAT AAAC AAAT
7355843 CTTT * 5 18/20 CTTT CTCT CTTT CTTT CTAT
7356134 CTTT * 7 26/28 CTTT CTTT CCTT CTTT TTTT CTTT CTTT
7359423 ATAA * 5 18/20 ATAA ATAG ATTA ATAA ATAA
7531986 CAAA * 5 18/20 CAAA CTAA CAAA CAAA CAAT
7569202 TATG * 5 18/20 TATG TATG TGTG TATG TATT
7674252 TTGT * 5 18/20 TTGT TTGT TTGT TTGT TTAA
7678922 AATA * 5 18/20 AATA AATA AATA TACA AATA
7704811 GCAA * 5 19/20 GCAA GCGA GCAA GCAA GCAA
7759787 TCCG * 5 18/20 TCCG TCCG TTTG TCCG TCCG
8005798 TAGA * 5 18/20 TAGA TATA TAGA TATA TAGA
8058246 TTTG * 5 18/20 TTTG ATTG TTTG TTTG TTTT
8062133 TCTT * 5 19/20 TCTT TCTT TCTT TCTT TTTT
8062643 AATA * 5 18/20 AATA AATA AATA AGTA AATT
8116019 ATTA * 5 18/20 ATTA AATA ATTA ATTA AGTA
8260908 TTTG * 5 18/20 TTTG TTTT TGTG TTTG TTTG
8263148 TGAT * 5 18/20 TGAT TGAT TGAT TGAT GAAT
8293305 TATT * 5 18/20 TATT TATT TATT TATT TTCT
8428580 TATG * 5 18/20 TATG TATG TATG TCTG TGTG
8433435 AGAA * 5 18/20 AGAA AGAA AGAG AGAA AAAA
8486128 AGGT * 5 18/20 AGGT AGGT AGGC ACGT AGGT
8506735 CTTC * 5 18/20 CTTC TTTC CTTC CTTC CTTT
8563250 ATGT * 5 18/20 ATGT GTGT ATGT ATGT ATGG
8615729 TAAA * 5 18/20 TAAA TCAA AAAA TAAA TAAA
8622537 GGAT * 5 20/20 GGAT GGAT GGAT GGAT GGAT
8691420 TATT * 5 18/20 TATT TTTT GATT TATT TATT
8700831 AGGG * 5 18/20 AGGG ACGG AGGG AGGG AGTG
8723391 TGCC * 6 22/24 TGCC TACG TGCC TGCC TGCC TGCC
8753675 AATA * 5 18/20 AATA AACA AATA AACA AATA
8826033 GGAA * 5 19/20 GGAA AGAA GGAA GGAA GGAA
8836917 TCTT * 5 18/20 TCTT TCTT TCTT TGTT TCTC
8878627 TGAT * 5 18/20 TGAT TGAT TGAT TGAT GAAT
8943659 TTTG * 5 18/20 TTTG TTTT TGTG TTTG TTTG
8964240 TATT * 5 18/20 TATT TATT TATT TATT TTCT
9099789 TATG * 5 18/20 TATG TATG TATG TCTG TGTG
9104641 AGAA * 5 18/20 AGAA AGAA AGAG AGAA AAAA
9121979 AGGT * 5 18/20 AGGT AGGT AGGC ACGT AGGT
9142580 CTTC * 5 18/20 CTTC TTTC CTTC CTTC CTTT
9277341 TAAA * 5 18/20 TAAA TCAA AAAA TAAA TAAA
9284148 GGAT * 5 20/20 GGAT GGAT GGAT GGAT GGAT
9332983 TTTA * 5 18/20 TTTA TTTT TTGA TTTA TTTA
9342396 AGGG * 5 18/20 AGGG ACGG AGGG AGGG AGTG
9364946 TGCC * 6 22/24 TGCC TACG TGCC TGCC TGCC TGCC
9395225 AATA * 5 18/20 AATA AACA AATA AACA AATA
9419172 GGAA * 5 19/20 GGAA AGAA GGAA GGAA GGAA
9430048 TCTT * 5 18/20 TCTT TCTT TCTT TGTT TCTC
9472080 ATAC * 5 18/20 ATAC CTAC ATAC ATAC TTAC
9508157 AATA * 6 22/24 AATA AATA AATA AATA AATA AGTT
9509720 TAGG * 5 18/20 TAGG TAGG TAGG TAGG CATG
9594442 TGCC * 5 18/20 TGCC TGCC TACG TGCC TGCC
9612177 TAAT * 5 18/20 TAAT TAAT TAAT TAAT TTAA
9617123 AGGC * 5 18/20 AGGC AGGC AGGT AGGC AGGT
9617965 GGTA * 5 19/20 GGTA GGTA GGTA GGCA GGTA
9623858 AGGC * 5 19/20 AGGC AGGC AGGC AGGC AGGA
9632066 AAAT * 5 18/20 AAAT AAAT AAAT AAAG ACAT
9732532 GAAG * 5 18/20 GAAG GAAG AAAA GAAG GAAG
9777670 TACC * 5 18/20 TACC TTCC TACC TACC TGCC
9779815 ACAT * 5 19/20 ACAT ACAT ACAT ACAT AGAT
9800775 ACAA * 5 19/20 ACAA ACAG ACAA ACAA ACAA
9803655 GTTT * 6 23/24 GTTT GTTT GTTT GTTT GTTT TTTT
9812754 TAAA * 6 22/24 TAAA TAAA TAAA TAAA TTAA TTAA
10240319 AAGA * 5 18/20 AAGA AAGA AAGA AGGA AAAA
10268733 TTTA * 5 18/20 TTTA TCTA TTTA TATA TTTA
10313555 GTAG * 6 22/24 GTAG GCAG GTAG GTAG GTAG GTAC
10392988 TTAA * 6 22/24 TTAA TTAA TTAA TTAA TTTA TTTA
10398357 ATTA * 5 18/20 ATTA ATTA ATTA GTTA AATA
10436228 AATA * 5 20/20 AATA AATA AATA AATA AATA
10455362 AATT * 5 18/20 AATT AATT AATT ATTT AAAT
10458794 AAAT * 5 18/20 AAAT CAAT AAAT CAAT AAAT
10468846 CTGC * 5 18/20 CTGC CTGC CTGC CTGC CTAT
10511347 AAGA * 5 18/20 AAGA AAGA AAGA AGGA AAAA
10547175 AATA * 5 20/20 AATA AATA AATA AATA AATA
10566691 AATT * 5 18/20 AATT AATT AATT ATTT AAAT
10570123 AAAT * 5 18/20 AAAT CAAT AAAT CAAT AAAT
10580175 CTGC * 5 18/20 CTGC CTGC CTGC CTGC CTAT
10629509 GTAG * 6 22/24 GTAG GCAG GTAG GTAG GTAG GTAC
10672187 TTAA * 6 22/24 TTAA TTAA TTAA TTAA TTTA TTTA
10677556 ATTA * 5 18/20 ATTA ATTA ATTA GTTA AATA
10695143 TGCC * 5 18/20 TGCC TGCC TGCC TGCC TACA
10700942 ATTA * 5 18/20 ATTA ATTA ATTA GTTA AATA
10815364 TGCC * 6 23/24 TGCC TGCC TGCC TACC TGCC TGCC
10816494 AGGC * 5 20/20 AGGC AGGC AGGC AGGC AGGC
10829027 GTAG * 6 23/24 GTAG GTAG GTAG GTAG GTAG GTAC
10882396 ACAT * 5 18/20 ACAT ATAT ACAT ATAT ACAT
10921048 TCTT * 6 22/24 TCTT TCTT TCTG TTTT TCTT TCTT
10941801 AGGT * 5 18/20 AGGT AGGT ATGT AGGT AGGC
10945486 CCTA * 5 18/20 CCTA CTTG CCTA CCTA CCTA
10980222 TGCC * 6 23/24 TGCC TGCC TGCC TGCC TGCC TACC
11045972 TACC * 10 36/40 TACC TACC TACC TACC TACC TACC TGCC TATC TACC AACT
11152617 AGGC * 5 18/20 AGGC AACC AGGC AGGC AGGC
11153257 CCTA * 6 23/24 CCTA CCTA CCTA CCTA TCTA CCTA
11159034 AATA * 6 22/24 AATA AATA AATA AATA AATA TATT
11191935 CCTA * 5 18/20 CCTA CCTA CCTA TCAA CCTA
11200551 TTTA * 5 18/20 TTTA TAAA TTTA TTTA TTTA
11228204 CTCA * 5 18/20 CTCA CTCT CTCA CTCA CACA
11304101 ATAC * 5 18/20 ATAC ATGC ATAC GTAC ATAC
11364800 CCTA * 5 18/20 CCTA CCTA CCTA CCTA CTTT
11381086 AATT * 5 18/20 AATT AATT AATT AATT TATG
11445158 GTAT * 5 18/20 GTAT GTAT GTAT GTAT TTTT
11578845 ATTT * 5 18/20 ATTT ATTT ATTC ATTC ATTT
11748140 TATT * 5 18/20 TATT TATT TATT TATT TTTC
11776422 ATTT * 5 19/20 ATTT ATGT ATTT ATTT ATTT
11780311 CTGC * 5 18/20 CTGC CTAC GTGC CTGC CTGC
11782159 TTAT * 5 18/20 TTAT TTAT TTAT TTTT TTTT
11783066 TGCC * 5 19/20 TGCC TGCC TACC TGCC TGCC
11945899 AATA * 6 23/24 AATA AATA AATA AATA AATA AAAA
12067475 TACC * 5 19/20 TACC TACC TACC TGCC TACC
12334683 ATGT * 5 18/20 ATGT GTGT ATGT ATGT ATGG
12372811 AGGC * 6 22/24 AGGC AGGC ACGT AGGC AGGC AGGC
12390719 TCCT * 5 18/20 TCCT GCCT TCCT TCCT GCCT
12402170 TTAA * 5 18/20 TTAA TTAA TCAA TTTA TTAA
12709030 AATC * 5 18/20 AATC AATC AATC AATC GATA
12758051 CACT * 5 18/20 CACT CACA AACT CACT CACT
12815509 AAAT * 5 18/20 AAAT AAAT AAAT AAAA AAAA
12828195 AAAT * 5 18/20 AAAT AACT AAAT AAAT ATAT
12835816 CCTA * 5 18/20 CCTA CCTA CCTG CCTA CTTA
12991294 GTAG * 6 22/24 GTAG GCAG GTAG GTCG GTAG GTAG
12991398 TAGG * 5 18/20 TAGG TAGG TAGG TAGG CAGT
12991421 GTAG * 8 29/32 GTAG GTAG GTAG GTAG GTAG GTAG GTAA AGAG
12991564 AGGT * 10 36/40 AGGT AGGT AGGT AGCT AGGT AGGT AGGT AGGT AGAG AGGA
12991723 TAGG * 10 39/40 TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG AAGG
12991857 AGGT * 12 44/48 AGGT AGGT AGGT AGGT AGGT AGGT AGGT AGGT AGAG AGGA AGGC AGGT
12992016 TAGG * 31 114/124 TAGG TAGG TATG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG AAGG CTAC CTAT
12992226 AGGT * 8 29/32 AGGT AGGT AGGT AGGT AGGT AGGT AGCA AGGC
12992361 TAGG * 10 38/40 TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGA AAGG
12992495 AGGT * 12 44/48 AGGT AGGT AGGT AGGT AGGT AGGT AGGT AGGT AGAG AGGA AGGC AGGT
12992654 TAGG * 16 58/64 TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TAGG TGGG TAGG TAGG TAGG TACT CACC
13038199 AGGT * 6 22/24 AGGT AGGT AGGT AGGT AAGT AGGA
13042491 GTAG * 6 22/24 GTAG GTAG GAAG GCAG GTAG GTAG
13049366 TATT * 5 18/20 TATT TCTT TATT TTTT TATT
13144751 CAAT * 6 22/24 CAAT CGAT CAAT AAAT CAAT CAAT
13230337 TAAA * 5 18/20 TAAA AAAA TAAA TAAA TATA
13248169 AAAT * 5 18/20 AAAT AAAT AAAT ATAT AAAA
13265221 ATGT * 5 18/20 ATGT ATTC ATGT ATGT ATGT
13295416 ACAT * 5 18/20 ACAT ACAT ACAT ACAC ACAC
13409981 TTTA * 5 19/20 TTTA TTTA TTTA TTTA TTTT
13517767 ATTC * 6 23/24 ATTC ATTC ATTC ATTC ATTC ATTG
13564214 AAAT * 5 19/20 AAAT AAAT AAAT GAAT AAAT
13581060 GTAG * 5 20/20 GTAG GTAG GTAG GTAG GTAG
13731049 TTAA * 6 22/24 TTAA TGCA TTAA TTAA TTAA TTAA
13767871 AAAT * 5 18/20 AAAT AATT AAAT AATT AAAT
13781180 GTAG * 5 20/20 GTAG GTAG GTAG GTAG GTAG
13866605 TAAA * 5 18/20 TAAA TAAA TAAA TAAA ATAA
14066606 GTGG * 5 18/20 GTGG GTGT GTGG GTGT GTGG
14156261 AGGC * 5 18/20 AGGC ATGC AGGC AGGT AGGC
14207595 TATT * 5 18/20 TATT TATT GATT TATT GATT
14226272 TTAA * 6 22/24 TTAA TGCA TTAA TTAA TTAA TTAA
14263094 AAAT * 5 18/20 AAAT AATT AAAT AATT AAAT
14287576 TCTG * 5 18/20 TCTG TCTC TCTG TCTC TCTG
14564082 AGGC * 5 18/20 AGGC ATGC AGGC AGGT AGGC
14601356 AATA * 5 19/20 AATA AATA AATA AATA AATC
14619317 AAAT * 5 18/20 AAAT CAAT AAAT CAAT AAAT
14629270 TCTG * 5 18/20 TCTG TCTC TCTG TCTC TCTG
14754635 AGGC * 5 18/20 AGGC ATGC AGGC AGGT AGGC
14791909 AATA * 5 19/20 AATA AATA AATA AATA AATC
14809870 AAAT * 5 18/20 AAAT CAAT AAAT CAAT AAAT
14819823 TCTG * 5 18/20 TCTG TCTC TCTG TCTC TCTG
15364154 ATCC * 5 18/20 ATCC ATCC ATCC ATCC AGCA
15379968 ATAA * 5 18/20 ATAA ATAA ATAA ATAA AAAT
15418452 ACAT * 5 18/20 ACAT ACAT AGAT ACAT AGAT
15433904 TGCC * 5 18/20 TGCC TGCC TGCC TGCC TACA
15499767 GCCT * 6 22/24 GCCT GCCC GCCT GCCT GCCC GCCT
15552309 TGCC * 5 18/20 TGCC TGCC TGCC CGCC AGCC
15577141 AAAT * 5 18/20 AAAT AAAA AAAT AAAT AATT
15673311 TTTA * 5 18/20 TTTA TTTA TTTA TTTA TTGT
15681977 TACT * 5 19/20 TACT TACT TACT TACT TACA
15756720 TGTA * 9 33/36 TGTA TGTA TGTG TGTA TGTA TGTA TGTA TGTG TATA
15799098 AGAC * 5 18/20 AGAC AGAC AGAC AGAC ACAT
15826615 TGTT * 6 23/24 TGTT TCTT TGTT TGTT TGTT TGTT
15846757 AAAT * 5 18/20 AAAT AAAA AAAT AAAT AATT
15942926 TTTA * 5 18/20 TTTA TTTA TTTA TTTA TTGT
15951592 TACT * 5 19/20 TACT TACT TACT TACT TACA
16026334 TGTA * 9 33/36 TGTA TGTA TGTG TGTA TGTA TGTA TGTA TGTG TATA
16068714 AGAC * 5 18/20 AGAC AGAC AGAC AGAC ACAT
16096208 TGTT * 6 23/24 TGTT TCTT TGTT TGTT TGTT TGTT
16111810 CTTT * 5 19/20 CTTT CTCT CTTT CTTT CTTT
16166598 GTTT * 5 18/20 GTTT GTTT TTTT GTAT GTTT
16171070 AAAT * 5 18/20 AAAT AAAT AAAT AAAT CAAA
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Total sequence length......................... 16183833
Minimum Tetra-Nucleotide repeat units......... 5
maximum mismatch allowed...................... 10%
Total number of repeats detected.............. 313
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Frequency of Tetra-Nucleotide Repeats
AAAT-25 AAAG-6 AATA-14 AATT-4 AATG-1 AATC-1 AAGA-3 AAGT-2
AAGG-1 AACG-1 ATAA-4 ATAC-2 ATTA-4 ATTT-7 ATTG-1 ATTC-1
ATGA-1 ATGT-3 ATCC-2 AGAA-5 AGAT-1 AGAC-2 AGGT-10 AGGG-2
AGGC-13 ACAA-1 ACAT-4 ACCT-1 TAAA-9 TAAT-6 TATT-12 TATG-3
TAGA-2 TAGG-9 TACT-2 TACC-4 TTAA-7 TTAT-5 TTAC-1 TTTA-8
TTTG-5 TTTC-4 TTGA-2 TTGT-2 TTGG-2 TTCC-1 TGAT-2 TGTA-3
TGTT-2 TGGT-1 TGCC-11 TCAA-1 TCAT-1 TCTT-6 TCTG-4 TCCA-1
TCCT-2 TCCG-2 GAAA-1 GAAG-1 GATG-1 GAGT-1 GAGG-2 GTAT-1
GTAG-12 GTTT-2 GTGG-1 GGAA-4 GGAT-2 GGTA-5 GGGA-1 GGCA-1
GCAA-1 GCAG-3 GCTG-1 GCCT-6 CAAA-1 CAAT-1 CATC-1 CAGG-2
CACT-1 CTAT-1 CTAC-1 CTTT-4 CTTC-2 CTGC-4 CTCA-2 CCTA-5
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Tetra-Nucleotide repeats in C. elegans Chromosome-I complete sequence
Minimum tetra-nucleotide repeating units = 5 (allowing a maximum of 10% mismatch)
Total 1 sequences searched with a total of 16183833 bp length
Total 313 repeats covering 6260 / 6856 base pairs
Length distribution of all tetra-nucleotide repeats
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No. of repeat units 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 >=25
total repeats 248 48 2 3 3 5 0 2 0 0 0 1 0 0 0 0 0 0 0 0 1
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Frequency distribution of different tetra-nucleotide repeat classes
25-AAAT 14-AATA 4-ATAA 9-TAAA 7-ATTT 8-TTTA 5-TTAT 12-TATT = 84
6-AAAG 3-AAGA 5-AGAA 1-GAAA 4-CTTT 4-TTTC 0-TTCT 6-TCTT = 29
0-AAAC 0-AACA 1-ACAA 1-CAAA 2-GTTT 5-TTTG 2-TTGT 2-TGTT = 13
4-AATT 4-ATTA 7-TTAA 6-TAAT = 21
1-AATG 1-ATGA 0-TGAA 0-GAAT 0-CATT 1-ATTC 0-TTCA 1-TCAT = 4
1-AATC 0-ATCA 1-TCAA 1-CAAT 0-GATT 1-ATTG 2-TTGA 2-TGAT = 8
2-AAGT 0-AGTA 0-GTAA 0-TAAG 0-ACTT 0-CTTA 1-TTAC 2-TACT = 5
1-AAGG 0-AGGA 4-GGAA 1-GAAG 0-CCTT 2-CTTC 1-TTCC 2-TCCT = 11
0-AAGC 0-AGCA 1-GCAA 0-CAAG 0-GCTT 0-CTTG 0-TTGC 0-TGCT = 1
0-AACT 0-ACTA 0-CTAA 0-TAAC 0-AGTT 0-GTTA 0-TTAG 0-TAGT = 0
1-AACG 0-ACGA 0-CGAA 0-GAAC 0-CGTT 0-GTTC 0-TTCG 0-TCGT = 1
0-AACC 0-ACCA 0-CCAA 0-CAAC 0-GGTT 0-GTTG 2-TTGG 1-TGGT = 3
0-ATAG 2-TAGA 1-AGAT 0-GATA 1-CTAT 0-TATC 0-ATCT 0-TCTA = 4
2-ATAC 0-TACA 4-ACAT 0-CATA 1-GTAT 3-TATG 3-ATGT 3-TGTA = 16
0-ATGG 0-TGGA 2-GGAT 1-GATG 0-CCAT 1-CATC 2-ATCC 1-TCCA = 7
0-ATGC 0-TGCA 0-GCAT 0-CATG = 0
0-ATCG 0-TCGA 0-CGAT 0-GATC = 0
2-AGAC 0-GACA 0-ACAG 0-CAGA 0-GTCT 4-TCTG 0-CTGT 0-TGTC = 6
0-AGTG 0-GTGA 0-TGAG 1-GAGT 1-CACT 0-ACTC 2-CTCA 0-TCAC = 4
0-AGTC 0-GTCA 0-TCAG 0-CAGT 0-GACT 0-ACTG 0-CTGA 0-TGAC = 0
10-AGGT 5-GGTA 12-GTAG 9-TAGG 1-ACCT 5-CCTA 1-CTAC 4-TACC = 47
2-AGGG 1-GGGA 0-GGAG 2-GAGG 0-CCCT 0-CCTC 0-CTCC 0-TCCC = 5
13-AGGC 1-GGCA 3-GCAG 2-CAGG 6-GCCT 0-CCTG 4-CTGC 11-TGCC = 40
0-AGCT 0-GCTA 0-CTAG 0-TAGC = 0
0-AGCG 0-GCGA 0-CGAG 0-GAGC 0-CGCT 0-GCTC 0-CTCG 0-TCGC = 0
0-AGCC 0-GCCA 0-CCAG 0-CAGC 0-GGCT 1-GCTG 0-CTGG 0-TGGC = 1
0-ACGT 0-CGTA 0-GTAC 0-TACG = 0
0-ACGG 0-CGGA 0-GGAC 0-GACG 0-CCGT 0-CGTC 0-GTCC 2-TCCG = 2
0-ACGC 0-CGCA 0-GCAC 0-CACG 0-GCGT 0-CGTG 0-GTGC 0-TGCG = 0
0-ACCG 0-CCGA 0-CGAC 0-GACC 0-CGGT 0-GGTC 0-GTCG 0-TCGG = 0
0-ACCC 0-CCCA 0-CCAC 0-CACC 0-GGGT 0-GGTG 1-GTGG 0-TGGG = 1
0-GGGC 0-GGCG 0-GCGG 0-CGGG 0-GCCC 0-CCCG 0-CCGC 0-CGCC = 0
0-GGCC 0-GCCG 0-CCGG 0-CGGC = 0
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Tetra-nucleotide repeats longer than 40 bp (repeated 10 or more times)
0-AAAT 0-AATA 0-ATAA 0-TAAA 0-ATTT 0-TTTA 0-TTAT 0-TATT = 0
0-AAAG 0-AAGA 0-AGAA 0-GAAA 0-CTTT 0-TTTC 0-TTCT 0-TCTT = 0
0-AAAC 0-AACA 0-ACAA 0-CAAA 0-GTTT 0-TTTG 0-TTGT 0-TGTT = 0
0-AATT 0-ATTA 0-TTAA 0-TAAT = 0
0-AATG 0-ATGA 0-TGAA 0-GAAT 0-CATT 0-ATTC 0-TTCA 0-TCAT = 0
0-AATC 0-ATCA 0-TCAA 0-CAAT 0-GATT 0-ATTG 0-TTGA 0-TGAT = 0
0-AAGT 0-AGTA 0-GTAA 0-TAAG 0-ACTT 0-CTTA 0-TTAC 0-TACT = 0
0-AAGG 0-AGGA 0-GGAA 0-GAAG 0-CCTT 0-CTTC 0-TTCC 0-TCCT = 0
0-AAGC 0-AGCA 0-GCAA 0-CAAG 0-GCTT 0-CTTG 0-TTGC 0-TGCT = 0
0-AACT 0-ACTA 0-CTAA 0-TAAC 0-AGTT 0-GTTA 0-TTAG 0-TAGT = 0
0-AACG 0-ACGA 0-CGAA 0-GAAC 0-CGTT 0-GTTC 0-TTCG 0-TCGT = 0
0-AACC 0-ACCA 0-CCAA 0-CAAC 0-GGTT 0-GTTG 0-TTGG 0-TGGT = 0
0-ATAG 0-TAGA 0-AGAT 0-GATA 0-CTAT 0-TATC 0-ATCT 0-TCTA = 0
0-ATAC 0-TACA 0-ACAT 0-CATA 0-GTAT 0-TATG 0-ATGT 0-TGTA = 0
0-ATGG 0-TGGA 0-GGAT 0-GATG 0-CCAT 0-CATC 0-ATCC 0-TCCA = 0
0-ATGC 0-TGCA 0-GCAT 0-CATG = 0
0-ATCG 0-TCGA 0-CGAT 0-GATC = 0
0-AGAC 0-GACA 0-ACAG 0-CAGA 0-GTCT 0-TCTG 0-CTGT 0-TGTC = 0
0-AGTG 0-GTGA 0-TGAG 0-GAGT 0-CACT 0-ACTC 0-CTCA 0-TCAC = 0
0-AGTC 0-GTCA 0-TCAG 0-CAGT 0-GACT 0-ACTG 0-CTGA 0-TGAC = 0
3-AGGT 1-GGTA 0-GTAG 4-TAGG 0-ACCT 0-CCTA 0-CTAC 1-TACC = 9
0-AGGG 0-GGGA 0-GGAG 0-GAGG 0-CCCT 0-CCTC 0-CTCC 0-TCCC = 0
0-AGGC 0-GGCA 0-GCAG 0-CAGG 0-GCCT 0-CCTG 0-CTGC 0-TGCC = 0
0-AGCT 0-GCTA 0-CTAG 0-TAGC = 0
0-AGCG 0-GCGA 0-CGAG 0-GAGC 0-CGCT 0-GCTC 0-CTCG 0-TCGC = 0
0-AGCC 0-GCCA 0-CCAG 0-CAGC 0-GGCT 0-GCTG 0-CTGG 0-TGGC = 0
0-ACGT 0-CGTA 0-GTAC 0-TACG = 0
0-ACGG 0-CGGA 0-GGAC 0-GACG 0-CCGT 0-CGTC 0-GTCC 0-TCCG = 0
0-ACGC 0-CGCA 0-GCAC 0-CACG 0-GCGT 0-CGTG 0-GTGC 0-TGCG = 0
0-ACCG 0-CCGA 0-CGAC 0-GACC 0-CGGT 0-GGTC 0-GTCG 0-TCGG = 0
0-ACCC 0-CCCA 0-CCAC 0-CACC 0-GGGT 0-GGTG 0-GTGG 0-TGGG = 0
0-GGGC 0-GGCG 0-GCGG 0-CGGG 0-GCCC 0-CCCG 0-CCGC 0-CGCC = 0
0-GGCC 0-GCCG 0-CCGG 0-CGGC = 0
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Total repeats longer than 40 bp = 9
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© Division of Biochemical Sciences, National Chemical Laboratory, Pune 411008, INDIA