Tri-Nucleotide Repeats in Genomic Sequences
Tri-Nucleotide Repeats in
C. elegans Chromosome-I complete sequence
Genomic sequence
lcl|worm_chr_I
Position Repeat Coverage Repeat
114489 TGG * 8 22/24 TGG TGG AGG TGG TGG TGG TGG TGC
121641 TCT * 7 19/21 TCT TCT TCT CCT TGT TCT TCT
163791 TAT * 10 27/30 TAT TAT TAT TAT TAT TAT TAT TAT TAG GAC
268684 GGT * 8 22/24 GGT GGT GTT GGT GGT GGT GGT GGC
571953 ACC * 7 19/21 ACC CAC ACC ACC ACC ACC ACC
579308 CTT * 8 22/24 CTT CTT CTT CTT CTT CGA CTT CTT
583629 ATA * 8 22/24 ATA ATA ATA ATA ATA ATA ATA AGT
585192 TTA * 11 30/33 TTA TTA TGA TTA TTA TTA TTA TTA TTA TTA GAA
597362 CCA * 7 19/21 CCA CCA CCG CCA CTA CCA CCA
600712 ATC * 9 25/27 ATC ATC ATC ATC ATC ATC ATC ATC AAT
605103 ATA * 7 19/21 ATA ATA ATA ATC ATA ATA ATT
611347 GAT * 7 19/21 GAT GAT GAT GAT GAT GAA AAT
613635 GCG * 8 22/24 GCG GCG GCG GCG GCG GCG GCG ACT
619657 TAC * 7 19/21 TAC TAC TAC TAC TAC CAC GAC
623807 CCA * 10 27/30 CCA CCA CCG CCA CCA CCT CCA CCA CCA CCG
675222 AGA * 7 20/21 AGA AGA AGA AGA AGA AGA CGA
697536 ATG * 8 23/24 ATG ATG ATG ATG ATG ATG ATG GTG
722588 AAG * 10 27/30 AAG AAG AAT AAG AAG AAG ATG AAG AAG AAC
761650 GCC * 9 25/27 GCC GCC GCC GCC GCC GTC GCC GCC GCG
762158 GAC * 7 19/21 GAC GAA GAC GGC GAC GAC GAC
762303 TTC * 9 25/27 TTC TTC TTC TTC TTC TTC TCC GTC TTC
763146 GTA * 7 20/21 GTA GTA GTA GTA GTA GTA GTT
763257 GCT * 8 22/24 GCT GCT GCT GCT GCT GCT GCT GTG
763488 TTC * 21 57/63 TTC TTC TTC TTC TTC TTC TTC ATC TTC TTC TTC TTC TTC TAC ATC TTC TTC TTC TTC TTG CTT
875573 GCG * 7 19/21 GCG CCG GCG CCG GCG GCG GCG
881915 TCC * 9 25/27 TCC TCC TCC TCC TCC TCC TCC TCT TCA
894383 GAA * 7 19/21 GAA GAA AAA GAA GTA GAA GAA
894461 ATA * 11 30/33 ATA GTA GTA ATA ATA ATA ATA ATA ATA ATA GTA
900053 TCT * 8 22/24 TCT ACT TCT TCT TCT TGT TCT TCT
1013409 CAG * 8 22/24 CAG CAG CAG CAG CAG CAG CAT CAA
1047643 TGC * 8 23/24 TGC CGC TGC TGC TGC TGC TGC TGC
1047832 AAG * 9 25/27 AAG AAG AAG AAG AAG AAG AAG AAG GGG
1274757 CTT * 7 19/21 CTT CTT CGT CTT CTT CTT CGT
1473041 GAA * 10 29/30 GAA GAA GAA GAA GAA GAA GAA GCA GAA GAA
1671372 AGA * 10 28/30 AGA AGA AGC AGA AGA AGA AGA AGA AGA AGC
1673232 CTG * 8 22/24 CTG CTG CTG CTG CTG TTG CTG CGG
1741592 CTT * 7 19/21 CTT CTT CAT CTG CTT CTT CTT
1793859 AGA * 7 19/21 AGA AGA AAA AGA AGA AGA AGG
1804537 ATG * 7 19/21 ATG ATG ATG ATG GTG ATG ATA
1838407 CAT * 7 19/21 CAT CAT CAT CAT CAT CAT CGG
1838502 AGA * 7 19/21 AGA AGA AGG AGA AGA AGA AGC
1901685 GTG * 7 19/21 GTG ATG GTG GTG GTG GTG GAG
1911750 ATC * 7 19/21 ATC ATC ATC ATC TTC ATC AGC
1941125 ATT * 8 23/24 ATT ATT ATT TTT ATT ATT ATT ATT
1951038 CTT * 7 19/21 CTT CTT CTT CTT CTT CTT CCA
1995162 TCT * 7 19/21 TCT TCT TCT TCT TCT TCT TGC
2009393 CTT * 8 22/24 CTT CTT CTT CTT CTT CTT CTC CAT
2011879 CTT * 8 22/24 CTT CTT CTT CTT CTC CTC CTT CTT
2015786 CAC * 7 19/21 CAC CAC CAC CAC CAG GAC CAC
2086123 ACC * 7 19/21 ACC ACC ACC ACC ACC GCC TCC
2096803 TGC * 8 22/24 TGC TGC TGC TGC TGC TGA TGT TGC
2098909 TTC * 7 19/21 TTC TTA TTC TTC TTC TTT TTC
2099737 AGC * 8 22/24 AGC AGC AGC AGC AGC AAC AGT AGC
2109208 GGT * 8 22/24 GGT GGA GGT GGT GGC GGT GGT GGT
2183687 TTC * 8 22/24 TTC CTC TTC GTC TTC TTC TTC TTC
2184029 CGT * 7 20/21 CGT CGT CGT CGT CGT CGT CTT
2184931 GAA * 10 27/30 GAA GAA GAA GAA GAA AAA GAA GAA GAA ACA
2201152 ATT * 8 22/24 ATT ATT ATA ATT ACT ATT ATT ATT
2211641 ACG * 7 19/21 ACG ACG ACG ACG ACG ATG AGG
2319874 GAT * 7 19/21 GAT GAT GAT GAT GAT GAA GAG
2325261 TGG * 7 19/21 TGG CGG TGG TGG TGG TGG AGG
2366765 AGA * 8 22/24 AGA AGA AAA AGA AGA AAA AGA AGA
2367917 AGA * 7 19/21 AGA AGA AGA AGA AGA AGG AAA
2369576 TCT * 10 27/30 TCT TCT TCT TCT CCT TCT TGT TCT TCT TTT
2370161 AAG * 7 19/21 AAG AAG AAG AAG AAA TAG AAG
2511695 CCA * 7 19/21 CCA CCA CCA CCA CCA CCA CAG
2578542 TTC * 7 19/21 TTC TTC TTC TTC TAC GTC TTC
2614610 AGA * 7 19/21 AGA GGA AGA AGT AGA AGA AGA
2615591 AGA * 7 19/21 AGA AGA AGA AAA AGA AGA AGG
2622900 GCT * 11 31/33 GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GTA
2628445 CAA * 7 19/21 CAA CAA AAA CAA CAT CAA CAA
2694936 AAG * 7 19/21 AAG AAG AAG GAC AAG AAG AAG
2697823 AAG * 7 19/21 AAG AAG AAG GAC AAG AAG AAG
2760004 CTT * 7 19/21 CTT CTT CTT TTT CTT TTT CTT
2776733 ACA * 7 19/21 ACA ACA ACA ACA ACA ATA CCA
2784863 CAG * 8 22/24 CAG GAG CAG CAG CAG CAG CAG CAA
2825448 AGA * 7 19/21 AGA AGA AGA AGA AGA AGG CGA
2826650 CTG * 7 20/21 CTG CTA CTG CTG CTG CTG CTG
2827862 CTT * 7 20/21 CTT CTT CTT CTT CTT CTT CTG
2831253 AGA * 7 19/21 AGA AGA CGA AGA AAA AGA AGA
2831348 GAG * 10 27/30 GAG GAG GAG GAG GAG GAG AAG GAG AAG GAA
2831425 CAG * 7 19/21 CAG CAT CAG CAG CAG CAG CAA
2834921 GAC * 7 19/21 GAC GAC GAC GAC GAC AAC GAA
2837091 CTT * 7 20/21 CTT CTT CTT CTT CTT CTT CGT
2922198 CAA * 7 19/21 CAA CAA CAA CAA CAA CAA AAT
2931616 ATT * 7 21/21 ATT ATT ATT ATT ATT ATT ATT
2934071 ATT * 10 28/30 ATT ATT ATT ATT ATT ATT ATT ATT AGC ATT
2982919 TGG * 8 22/24 TGG TGG TGG AGC TGG TGG TGG TGG
2984318 CAA * 8 22/24 CAA CAG CAA CAA CAT CAA CAA CAA
3000971 AGA * 8 22/24 AGA AGA AGA CGA AGA AGA AGA TGA
3015596 TGT * 8 22/24 TGT TGT TGC TGT TGT TGT TGT TGG
3022338 TGC * 7 19/21 TGC TGC TGC TGC TGC TGT TGA
3022784 TTG * 8 22/24 TTG TTG TTG TTG TTG CTG CTG TTG
3024514 GCC * 7 19/21 GCC GCC GCT GCA GCC GCC GCC
3026600 ATG * 8 22/24 ATG TTG TTG ATG ATG ATG ATG ATG
3164857 TTC * 7 19/21 TTC TTC TTC TTA TTC TTT TTC
3172115 TCA * 7 20/21 TCA TCA TCA TCA TCG TCA TCA
3183957 TCT * 8 22/24 TCT TCT TCT TCT TAT TCT TCT TCC
3199510 ATG * 7 19/21 ATG ATG ATG ATG TGG ATG ATG
3203008 TCT * 7 20/21 TCT TCT TCT TCT TCT TCA TCT
3222508 TAT * 7 19/21 TAT TAT TTT TAT TCT TAT TAT
3301786 TTC * 7 19/21 TTC TTC ATA TTC TTC TTC TTC
3335607 AGA * 7 19/21 AGA ACA AGA AGA AAA AGA AGA
3387735 TGG * 7 20/21 TGG TGG TGG AGG TGG TGG TGG
3527251 TTA * 7 20/21 TTA TTA TTA TTA TTA TTA CTA
3529208 ATC * 7 19/21 ATC ATC ATC ATC TTC ATC TTC
3568814 TTG * 7 19/21 TTG TTG TTG TTT TTG TAG TTG
3623390 AAG * 8 22/24 AAG AAG AAT AAG AAG AAG AAG AAT
3632354 TGT * 8 22/24 TGT TGT TGC TGA TGT TGT TGT TGT
3632740 AGC * 7 19/21 AGC ATC AGC AGC AGC AGA AGC
3635076 GAA * 7 19/21 GAA CAA GAA GAA GAA GAA AAA
3635373 AGC * 7 19/21 AGC AGC AGC AGC AAA AGC AGC
3635741 GAA * 7 19/21 GAA GAA GAA GAA GAA GAA GGC
3643316 ACG * 7 19/21 ACG ACG ACG ACG ACG ACG ATT
3664266 ATG * 8 22/24 ATG ATG ATG ATC ATG ATG ATC ATG
3675003 AGA * 7 19/21 AGA AGA AGC AGA AGA AGA CGA
3675665 AGA * 7 19/21 AGA AGA AGA AGA ATA TGA AGA
3691093 CTT * 10 28/30 CTT CTT CTT CAT CTT CTT CTT CTT CTT CTG
3702512 AAG * 8 22/24 AAG AAG ACG AAG GAG AAG AAG AAG
3709663 AAG * 8 22/24 AAG AAG ACG AAG GAG AAG AAG AAG
3735492 TTC * 7 19/21 TTC GTC TTC TAC TTC TTC TTC
3753595 GAG * 7 19/21 GAG GAG GAG AAG GAG GAG GTG
3760663 TGA * 10 28/30 TGA TGA TGA TGA CGA TGA TGA GGA TGA TGA
3923576 AGA * 7 19/21 AGA GGA AGA AGT AGA AGA AGA
3990873 TTC * 7 19/21 TTC TTC TTC TTC TTC TTT CTC
4153815 AGA * 8 22/24 AGA AGA AGA AGA CGA AGA ACA AGA
4200013 CAT * 9 25/27 CAT CAT CAT CAT CAC CAT CAT CGT CAT
4282653 TCT * 7 19/21 TCT TCG TCT TCT TCT TCT TTT
4364696 TAT * 7 19/21 TAT TAT TAT TAT TAT TAT TGG
4389188 TCG * 7 19/21 TCG TCT TCG TCG TCT TCG TCG
4506582 CAG * 7 19/21 CAG CAG AAG CAG CAG CCG CAG
4539348 ATG * 7 19/21 ATG AAG ATG ATG ATT ATG ATG
4595587 ACC * 8 22/24 ACC ACC ACC ACC GCC ACC ACC ATC
4723900 GAA * 8 22/24 GAA GAA GAA GAA GAA GAC GAT GAA
4818067 GAA * 7 19/21 GAA GAC GAA GAA GAT GAA GAA
4881996 TCA * 7 19/21 TCA TCA TCA TCT TCA TCA TCT
4926096 CAT * 7 20/21 CAT CAT CTT CAT CAT CAT CAT
4959889 AGA * 7 20/21 AGA AGA AGA AGA AGA AGA AAA
4996663 TGA * 7 19/21 TGA TGA TGA TGA AGA TTA TGA
5261736 TCT * 7 19/21 TCT TCC TCT TCC TCT TCT TCT
5290504 TCG * 7 19/21 TCG TCG TCG TCG TCA TCG TCA
5355655 TCA * 7 19/21 TCA TCA TCG TCA CCA TCA TCA
5389685 AGA * 7 19/21 AGA AGA GGA CGA AGA AGA AGA
5511800 CAT * 8 22/24 CAT CAT CAT CAT CTT CAT CGT CAT
5520773 TCT * 7 20/21 TCT TCT TCT TCT TCC TCT TCT
5543387 AGA * 8 22/24 AGA AGA AGA AAA AGA AGA AGA CGA
5559061 TCT * 7 20/21 TCT TCT TCA TCT TCT TCT TCT
5674591 ATA * 7 19/21 ATA ATA ATA ATT ATA ATA ATT
5679097 GTC * 7 19/21 GTC TTC GAC GTC GTC GTC GTC
5715123 TCT * 7 20/21 TCT CCT TCT TCT TCT TCT TCT
5725351 AGA * 8 22/24 AGA AGA AGA AGA AGA AGA AAA TGA
5773007 CTT * 7 19/21 CTT CTT CTT CTG CTT CTT CCT
5843261 AGA * 8 23/24 AGA AGA AGA AGA AGA TGA AGA AGA
5846457 CAA * 7 19/21 CAA CAA CAA CAT CAA CAA CAG
5860017 AGA * 8 22/24 AGA AGA CAA AGA AGA AGA AGA AGA
5894505 AGG * 7 19/21 AGG AGG AGA AGG AAG AGG AGG
6122060 CAG * 7 19/21 CAG CAG CAG CAG CAA CAA CAG
6202085 GAT * 7 19/21 GAT GAT GAT GAT GAA GAT GAA
6202106 GAA * 7 19/21 GAA GAA GAC GAA GAT GAA GAA
6202174 AGA * 7 19/21 AGA AGA AGA AGA GGA AGA TGA
6212878 AGG * 7 19/21 AGG AGG AGG AGG AGG AGG TGA
6253627 GTG * 8 22/24 GTG GTG GTA GTG GTA GTG GTG GTG
6297678 GAA * 11 30/33 GAA GAA AAA GAA GAA GAA GCA GAA GAA GAA AAA
6376099 TCT * 7 19/21 TCT TCT TCT TCT TCA TCA TCT
6579088 GAG * 7 19/21 GAG AAG AAG GAG GAG GAG GAG
6594044 TCT * 7 20/21 TCT TCT TCT TCT TCT TCT ACT
6686849 TGA * 7 19/21 TGA TGA TGA AGA TGA CGA TGA
6687446 ATT * 7 19/21 ATT AGA ATT ATT ATT ATT ATT
6687606 ATC * 7 19/21 ATC ATC ATC ATC ATT ATC ACC
6736455 AGA * 10 27/30 AGA AGA AGA AGA AGA AGA AGA AGA AGA GAG
6764631 TGA * 7 19/21 TGA TGA TGA AGA TGA TGA AGA
6769912 GAT * 7 19/21 GAT GAT GAC GAT GAT GAT GAA
6805825 TTC * 8 22/24 TTC TTC CTC TTC TTC TTA TTC TTC
6847872 GAT * 7 19/21 GAT GAT GAT GAA GAT GAT AAT
6866373 CTT * 8 22/24 CTT CTT CTT CTT CTT CAT CTT GTT
6884148 ATC * 7 19/21 ATC ATT ATC ATC ATC AAC ATC
6896018 TCT * 7 19/21 TCT TCT TCC TCG TCT TCT TCT
6985305 TTC * 7 19/21 TTC TTC TTC TTC CTC CTC TTC
7012402 GAA * 8 23/24 GAA GAA GAA GAA GTA GAA GAA GAA
7046504 TGT * 7 19/21 TGT TGT TGT TGT CGA TGT TGT
7050306 ACA * 8 22/24 ACA ACA ACA GCA TCA ACA ACA ACA
7119280 TGT * 7 19/21 TGT TGT TGT TGC TGC TGT TGT
7120174 TGT * 7 19/21 TGT TGT TGT TGC TGT TGT TGC
7122471 TTG * 7 19/21 TTG TGG TTG TTG TTG CTG TTG
7178364 TCA * 8 22/24 TCA TCA TCG TCA TCA TCA TCG TCA
7178403 TCG * 7 20/21 TCG TCG TCG TCG TCA TCG TCG
7283560 AAG * 7 19/21 AAG AAG AAG AAG CAG AAG GAG
7291519 ATG * 7 19/21 ATG ATG ATG ATG ATG ATG CTC
7310081 TAT * 11 31/33 TAT TTT TAT TAT TAC TAT TAT TAT TAT TAT TAT
7351536 CAT * 7 19/21 CAT CAT CAT CCT CAT CCT CAT
7426382 CTG * 8 22/24 CTG CTG CTG CTG TTG TTG CTG CTG
7430271 AGC * 7 19/21 AGC AGC AGC AGC AGC GGG AGC
7430428 TGT * 7 19/21 TGT GGT TGT TGT TGT TGT TGC
7504087 ACT * 7 19/21 ACT ACT TCT ACT ACT ACT AAT
7525439 GAT * 7 19/21 GAT GAT GAT GAT GAT GAT GGG
7588073 AAT * 7 20/21 AAT AAT AAT AAT AAT AAT AAA
7598897 GGA * 7 19/21 GGA AGA GGA GGA GAA GGA GGA
7600106 CTT * 7 19/21 CTT CTT CTT CTA CTT ATT CTT
7697405 AGA * 8 22/24 AGA ATA AGA CGA AGA AGA AGA AGA
7697573 AGA * 7 20/21 AGA AGA AGA AGA ATA AGA AGA
7707348 TTC * 7 20/21 TTC TTC TTC TTC TTC TTC CTC
7749194 CTT * 8 22/24 CTT CTT CTT CTT CTT TTC CTT CTT
7765907 TGG * 7 19/21 TGG TGG AGG TGG TGG TGG TTG
7765935 GAA * 8 22/24 GAA GAA GAA GAA GAA GTA GAA GTA
7766095 TAT * 7 19/21 TAT TAT TAT TAT TAT TAA TAG
7774625 CAC * 10 27/30 CAC AAC CAC CAC CAC CAC CAC AAC CAC TAC
7784976 AGA * 7 19/21 AGA AGA AGA AGG AGA AGA AGT
7785844 TTC * 9 25/27 TTC TTC TTC TTC TTC GTT TTC TTC TTC
7826746 CTT * 7 19/21 CTT CTT CTT CTT CTT TTC CTT
7861218 AAT * 7 19/21 AAT AAT AAT AAT GTT AAT AAT
7915947 CTG * 8 22/24 CTG CTG CGG CTC CTG CTG CTG CTG
7925242 GAT * 7 19/21 GAT GAT GAT GAT GAT GAC GAA
7985285 TTG * 7 19/21 TTG CTG TTG CTG TTG TTG TTG
8143915 TCT * 7 19/21 TCT TCT TCT TCT TCT GCT CCT
8156294 TTC * 8 22/24 TTC TTC TTC TTC TTC TTC TTC AAC
8159093 ATC * 7 20/21 ATC ATC ATC ATC ATC CTC ATC
8177697 TCT * 7 19/21 TCT TCT TCT TCT TCT GCT CCT
8190076 TTC * 8 22/24 TTC TTC TTC TTC TTC TTC TTC AAC
8192874 ATC * 7 20/21 ATC ATC ATC ATC ATC CTC ATC
8294217 CTT * 7 19/21 CTT TTT GTT CTT CTT CTT CTT
8305550 ATC * 7 19/21 ATC CTC ATC ATC ATC TTC ATC
8328123 ATT * 8 22/24 ATT ATT ATT ATT ATT ATT ATG TTT
8364768 AAT * 7 19/21 AAT AAT AAT AAT AAT AAT ATA
8373278 CAT * 7 19/21 CAT CAT CAT CAA CAT CAT CAG
8389145 ATT * 7 19/21 ATT ATT ATT ATT ATT ATG ATG
8404684 CTT * 7 19/21 CTT CTT GTT CTT CTT CTT TTT
8426434 AAG * 7 19/21 AAG AAG AAG AAA AAG AAG AAC
8427691 AAT * 8 24/24 AAT AAT AAT AAT AAT AAT AAT AAT
8458775 AGA * 7 19/21 AGA AGA AGA AGA AGA TCA AGA
8501569 CCA * 7 19/21 CCA CCA GCA CCA CCA ACA CCA
8558206 TAT * 7 20/21 TAT TTT TAT TAT TAT TAT TAT
8564198 GAT * 7 19/21 GAT GAT GAT GAT GAT GGT GGT
8579671 TTC * 7 19/21 TTC TTC TTC TTC TTC TCC TCC
8616869 AGA * 7 19/21 AGA AAA AGA AGA AGA AGA AGG
8622586 ACG * 7 20/21 ACG ACG ACG ACG ACG ACG AAG
8629321 AGA * 7 19/21 AGA AGA AGA AGA AGG TGA AGA
8642228 CTC * 26 71/78 CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTT TTT CCA ATT
8664897 TTA * 7 19/21 TTA TTA ATA TTG TTA TTA TTA
8828314 CTT * 7 19/21 CTT CTT CTT CTT CTT CCT TTT
8839414 CAT * 7 19/21 CAT TGT CAT CAT CAT CAT CAT
8846905 TTC * 7 19/21 TTC TTC TTC GTG TTC TTC TTC
8965152 CTT * 7 19/21 CTT TTT GTT CTT CTT CTT CTT
8967350 CTT * 7 19/21 CTT TTT GTT CTT CTT CTT CTT
8978679 ATC * 7 19/21 ATC CTC ATC ATC ATC TTC ATC
9001246 ATT * 8 22/24 ATT ATT ATT ATT ATT ATT ATG TTT
9035998 AAT * 7 19/21 AAT AAT AAT AAT AAT AAT ATA
9044500 CAT * 7 19/21 CAT CAT CAT CAA CAT CAT CAG
9060364 ATT * 7 19/21 ATT ATT ATT ATT ATT ATG ATG
9075902 CTT * 7 19/21 CTT CTT GTT CTT CTT CTT TTT
9097646 AAG * 7 19/21 AAG AAG AAG AAA AAG AAG AAC
9098902 AAT * 8 24/24 AAT AAT AAT AAT AAT AAT AAT AAT
9137414 CCA * 7 19/21 CCA CCA GCA CCA CCA ACA CCA
9278480 AGA * 7 19/21 AGA AAA AGA AGA AGA AGA AGG
9284197 ACG * 7 20/21 ACG ACG ACG ACG ACG ACG AAG
9290931 AGA * 7 19/21 AGA AGA AGA AGA AGG TGA AGA
9306469 TTA * 7 19/21 TTA TTA ATA TTG TTA TTA TTA
9421450 CTT * 7 19/21 CTT CTT CTT CTT CTT CCT TTT
9432545 CAT * 7 19/21 CAT TGT CAT CAT CAT CAT CAT
9440036 TTC * 7 19/21 TTC TTC TTC GTG TTC TTC TTC
9580793 TTG * 8 23/24 TTG TTG TTG TTG TTG TTG TTG ATG
9595837 TTA * 7 19/21 TTA TTA TTA TTA TTA TGA TTG
9596853 ATT * 7 19/21 ATT ATT ATT ATT ATT ATA ATA
9605828 GTG * 7 19/21 GTG GAG GTG GTG ATG GTG GTG
9628274 GAA * 7 20/21 GAA GAA GAA GAA GAA GAA GAC
9646448 TGC * 7 19/21 TGC TGC TGC GGC TGC TGC TGT
9667405 TCT * 8 22/24 TCT TAC TCT TCT TCT TCT TCT TCT
9667920 CTT * 7 19/21 CTT GCT CTT CTT CTT CTT CTT
9668031 CTT * 7 20/21 CTT CTT GTT CTT CTT CTT CTT
9685393 CTT * 8 22/24 CTT CTT CTT CTT CTT CAT CTT TTT
9736972 ACT * 7 20/21 ACT ACT ACT ACT ACT ACT AAT
9946329 ATA * 18 49/54 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATG ATA ATA ATA ATG CCT
9946700 AAT * 7 20/21 AAT AAT AAC AAT AAT AAT AAT
9978739 CAC * 7 19/21 CAC CAC CTC CAC CAC CGC CAC
10079344 CCA * 7 20/21 CCA ACA CCA CCA CCA CCA CCA
10080025 CTT * 14 40/42 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CAC
10082849 CAT * 7 19/21 CAT CAA CAT CAT CAT CAT CGT
10083037 CAG * 7 19/21 CAG CAG CAG CAG CAG CAG CGT
10117771 TGA * 7 19/21 TGA TGA TGA TGA TGA TAA TCA
10141331 CCA * 7 20/21 CCA ACA CCA CCA CCA CCA CCA
10142012 CTT * 14 40/42 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CAC
10144836 CAT * 7 19/21 CAT CAA CAT CAT CAT CAT CGT
10145024 CAG * 7 19/21 CAG CAG CAG CAG CAG CAG CGT
10248274 GCA * 7 20/21 GCA GCA GCA GCA GCA GCA GAA
10250758 GCA * 7 19/21 GCA GCA GTA GCA GCA GTA GCA
10371456 CTC * 7 19/21 CTC CTC CTC CTC GTC CTC CAC
10481121 AGA * 7 19/21 AGA AGA AGA AAA AGA AGG AGA
10519302 GCA * 7 20/21 GCA GCA GCA GCA GCA GCA GAA
10521786 GCA * 7 19/21 GCA GCA GTA GCA GCA GTA GCA
10763822 GAA * 7 19/21 GAA GAA GAA GAA GAA GGA AAA
10766506 TCT * 8 22/24 TCT TCT TCT TCT TCT TTT TCT TTT
10767508 AGC * 7 19/21 AGC AGC GGC TGC AGC AGC AGC
10771388 CCA * 7 19/21 CCA CCA CCA CCA ACA ACA CCA
10836656 CTT * 7 19/21 CTT CTT CTT CTT CTT TCT CTT
10843786 CAA * 9 25/27 CAA CAG CAA CAA CAA CAG CAA CAA CAA
10862057 CTT * 8 23/24 CTT CTT CTT CTT CTT CTT CTT TTT
10872451 GAA * 8 23/24 GAA AAA GAA GAA GAA GAA GAA GAA
11029107 GAA * 11 31/33 GAA GAA GAA GAA GAA GAA GAA GAA GAA TAG GAA
11029209 TGT * 7 19/21 TGT TGT TGT TGT GGT GGT TGT
11029285 AAG * 7 20/21 AAG AAG AAG AAG AAG TAG AAG
11051679 AAT * 7 19/21 AAT AAT AAT AAT AAT AAT ATA
11096208 TGG * 8 22/24 TGG AGG TGG TGG TGG AGG TGG TGG
11097689 ATC * 7 19/21 ATC ATC ATC ATC ATC ATC AAT
11141400 CTT * 10 28/30 CTT CTT CCT CTT CTT CTG CTT CTT CTT CTT
11164554 ATT * 7 20/21 ATT ATT ATT ATT ATT ATT ATC
11228703 AGA * 8 22/24 AGA AGA AGA AGA AGA AGA CGA TGA
11233442 CCA * 9 25/27 CCA CCA CCA CCA CCT CCA CCG CCA CCA
11242098 CTT * 8 22/24 CTT CTT CTT CTT CTC CTT CTT TTT
11319110 TCC * 7 20/21 TCC TCC TCC TCC TCC TCC TCA
11425745 ATC * 9 25/27 ATC ATA ATC ATA ATC ATC ATC ATC ATC
11490705 ATT * 7 20/21 ATT ATT ATT ATT ATT ATT ACT
11526935 AAT * 7 19/21 AAT AAT AAT AAT AAT AAT CAA
11527125 ATG * 7 19/21 ATG ATG ATG ATG ATA ATG ATA
11528606 GAT * 9 25/27 GAT GAT GAT GAT GAT TAT GAT TAT GAT
11580264 CAG * 7 20/21 CAG CAG CAT CAG CAG CAG CAG
11633787 GAG * 7 19/21 GAG GAG GAG TAG GAG TAG GAG
11696134 GAA * 9 25/27 GAA GAA GAA GAA GAA GAC GAT GAA GAA
11698009 AAT * 7 19/21 AAT AAA AAT AAT AAT AAT AAA
11719225 ATT * 7 19/21 ATT ATT ATT ATT GTT ATT ATC
11770508 GTA * 7 19/21 GTA GTA GTA GTA GTA GTG GTG
11841362 AGA * 7 19/21 AGA AGA AGA AGA AGA TCA AGA
12014957 GTA * 7 19/21 GTA GTA GTG GTA GTT GTA GTA
12020871 TCA * 7 19/21 TCA ACA TCA TCA TCA TCA TCT
12030499 CGG * 7 19/21 CGG CGG CGG CGG CGG AGG TGG
12090490 AAT * 8 22/24 AAT AAT AAT AAT AAT AAT AAA ACT
12096976 ATG * 7 19/21 ATG ATG ATG ATG ATG ATG TTT
12197413 ACC * 7 19/21 ACC TCC ACC ACC ACC GCC ACC
12210025 AAT * 12 33/36 AAT AAT CAT AAC AAT AAT AAT AAT AAT AAC AAT AAT
12239364 GAT * 7 19/21 GAT GAT GAT GTT GAA GAT GAT
12245764 AAG * 7 19/21 AAG AAG AAG AAG AAG AAG TAA
12329640 TAT * 7 20/21 TAT TTT TAT TAT TAT TAT TAT
12335631 GAT * 7 19/21 GAT GAT GAT GAT GAT GGT GGT
12457345 TGG * 7 20/21 TGG CGG TGG TGG TGG TGG TGG
12472466 TCT * 11 30/33 TCT TCT TAT TCT TCT TCT TCT TCT TCT TTT CCT
12473900 ATT * 7 19/21 ATT ATT ATT ATT ATT ATT GTC
12546636 TTA * 7 20/21 TTA TTA TTA TTA ATA TTA TTA
12549736 AAG * 7 19/21 AAG AAT AAG AAT AAG AAG AAG
12573047 TTC * 7 19/21 TTC GGC TTC TTC TTC TTC TTC
12604938 ATA * 18 49/54 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATG ATA ATA ATA ATG CCT
12605309 AAT * 7 20/21 AAT AAT AAC AAT AAT AAT AAT
12637350 CCA * 7 19/21 CCA CCA CCT CCA CCA CCG CCA
12687649 TGA * 7 19/21 TGA TGA TGA TGA TGA TAA TCA
12691140 TCG * 10 29/30 TCG TCG TCG TCG TCG TCG TCG TCG TCG TCC
12752168 TCG * 7 19/21 TCG TCG TCG TCG TCG TCG CTG
12867118 TGG * 8 22/24 TGG TGG TGG TGG TGG TGG TGG AGC
12939181 CCA * 11 31/33 CCA CCA CCG CCG CCA CCA CCA CCA CCA CCA CCA
12999471 GTA * 8 23/24 GTA GTA GTA GTA GTA GTA GAA GTA
13047003 AGA * 7 19/21 AGA AGA AGA AGA ATG AGA AGA
13146860 ACC * 7 19/21 ACC ACA ACC ACC TCC ACC ACC
13179057 AAG * 7 19/21 AAG AAG AAG GAG AAG AAG ACG
13186380 TAT * 7 19/21 TAT TAG TAT TAT TAT TAT TAG
13242926 CGT * 9 25/27 CGT CGT CGT CGT CGT CGT CGT CGT TTT
13321107 ATT * 7 19/21 ATT ATT ATC ATT ATT TTT ATT
13409463 GAA * 7 19/21 GAA GAA TAA GAA GAC GAA GAA
13462063 GAA * 7 19/21 GAA AAA GAA GAA AAA GAA GAA
13495539 GCA * 7 20/21 GCA GCA GCA GCA GCA GCA GCT
13519156 GAT * 7 19/21 GAT GAA GAT GAT GAG GAT GAT
13545333 CCA * 7 19/21 CCA CCA CTA CCA CCA CCA CCT
13675864 TTA * 9 25/27 TTA TTT TCA TTA TTA TTA TTA TTA TTA
13747475 TAA * 7 19/21 TAA AAA TAA TAA TAC TAA TAA
13750845 CTT * 7 20/21 CTT CTT CTT CTT CTT CTT TTT
13888285 TCA * 11 30/33 TCA TCA TCA TCA TCA TAA TCA TCA TCG TCA TTA
13888318 TTA * 7 19/21 TTA TTA TTA TTA TTA TTA TCG
13888357 TTG * 7 19/21 TTG TTG TTG TTG TTG TTA GTG
13890000 GTA * 14 38/42 GTA GTA GTA GTA GTA GTA GTA GTA GTA GTA GTA AAA ATA ATA
13950011 TCA * 7 19/21 TCA TCG TCG TCA TCA TCA TCA
13957384 GTT * 8 22/24 GTT GTT GAT GTT GTT GAT GTT GTT
13965818 TCA * 7 19/21 TCA TCG TCA TCA TCG TCA TCA
13969016 GCA * 8 22/24 GCA GCA GCA ACA GCA ACA GCA GCA
13969239 AAC * 16 44/48 AAC AAC AAT AAC AAC AAT AAC AAC AAC AAC AAC AAC AAC AAC AAC GGC
14004793 TTC * 17 47/51 TTC TTC TTC TTC TTC TTC TTC TTC TTC TCC TTC TTC TTC TTC TTC GCC TTG
14056859 CTG * 7 19/21 CTG CTG CTG CTG CTG CTA TTG
14056883 TTG * 7 19/21 TTG TTG TTG TTG TTG TTT TGG
14102774 AAT * 8 22/24 AAT GAA AAT AAT AAT AAT AAT AAT
14144022 ATG * 8 22/24 ATG ATG ATG ATG ATG ATA ATG AAG
14209177 TAA * 10 27/30 TAA TAA TAA CAA TAA TAA TAA TAA TTA TTA
14242698 TAA * 7 19/21 TAA AAA TAA TAA TAC TAA TAA
14246068 CTT * 7 20/21 CTT CTT CTT CTT CTT CTT TTT
14366551 TAA * 9 25/27 TAA TAA TAA TAA TAA TAA TGA AAA TAA
14488841 ACT * 8 22/24 ACT ACT ACT ACT ACT ACT ACA AGT
14551845 ATG * 8 22/24 ATG ATG ATG ATG ATG ATA ATG AAG
14617731 ATT * 8 23/24 ATT ATT ATT ATT ATT GTT ATT ATT
14636460 TTA * 8 22/24 TTA TTA TTA TTA TTA TTA TTT TCA
14742398 ATG * 8 22/24 ATG ATG ATG ATG ATG ATA ATG AAG
14808284 ATT * 8 23/24 ATT ATT ATT ATT ATT GTT ATT ATT
14827013 TTA * 8 22/24 TTA TTA TTA TTA TTA TTA TTT TCA
14866239 CCA * 7 19/21 CCA CCA CCA CCG GCA CCA CCA
14869117 AAT * 7 20/21 AAT AAT AGT AAT AAT AAT AAT
14935035 ACT * 8 22/24 ACT ACT ACT ACT ACT ACT ACA AGT
14971191 ATC * 9 25/27 ATC ATC ATC ATC ATC ATC ATC ATC ACA
15117348 ATT * 7 20/21 ATT ATT ATT ATT ATT ATT ATG
15124435 ATC * 8 22/24 ATC ATC ATC ATC TTC ACC ATC ATC
15227944 ACT * 8 22/24 ACT ACT ACT ACT ACT ACT ACA AGT
15264103 ATC * 9 25/27 ATC ATC ATC ATC ATC ATC ATC ATC ACA
15415816 TGA * 10 28/30 TGA TGA TGA TGA TGA TGA TGA TGA TGA TAT
15424109 AAG * 7 19/21 AAG AAA AGG AAG AAG AAG AAG
15472061 AAG * 7 19/21 AAG AGA AAG AAG AAG AAG AAG
15537981 TGG * 8 23/24 TGG TGT TGG TGG TGG TGG TGG TGG
15539676 TTA * 7 19/21 TTA TTA TTT TTA TTG TTA TTA
15552357 CTC * 8 22/24 CTC ATC CTC CTC CTC CTC CTC CTG
15557624 TTC * 11 30/33 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTG TCT
15558964 GAA * 7 19/21 GAA GAA GGA GAA GAA GGA GAA
15601900 GCT * 7 19/21 GCT TCT GCT GCT GCT GCT GCC
15640868 AAG * 9 25/27 AAG AAG AAG AAG GAG AAG AAG AAG AAA
15640898 TCG * 7 19/21 TCG TCG TCG TCG TCG TCG TAA
15644972 TCT * 11 31/33 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TTG
15667052 CAT * 7 19/21 CAT CAT CAT CAT CAC CAC CAT
15714544 TTC * 7 20/21 TTC TTC TTC TTC TTC TTC TCC
15755773 GTA * 7 20/21 GTA GTA GAA GTA GTA GTA GTA
15807309 AAT * 7 20/21 AAT AAT AAT AAT AAT AAT AAA
15810497 TCA * 9 25/27 TCA TCA TCA TCA TCA TCA TCA TCA TTC
15815989 CGT * 9 25/27 CGT CGT CGT CGT CGT CGT CGT CGT TTT
15824651 GAG * 8 23/24 GAG GAG GAG GAG GAG GAG GAG GAC
15871516 GCT * 7 19/21 GCT TCT GCT GCT GCT GCT GCC
15910483 AAG * 9 25/27 AAG AAG AAG AAG GAG AAG AAG AAG AAA
15910513 TCG * 7 19/21 TCG TCG TCG TCG TCG TCG TAA
15914587 TCT * 11 31/33 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TTG
15936667 CAT * 7 19/21 CAT CAT CAT CAT CAC CAC CAT
15984159 TTC * 7 20/21 TTC TTC TTC TTC TTC TTC TCC
16025387 GTA * 7 20/21 GTA GTA GAA GTA GTA GTA GTA
16076925 AAT * 7 20/21 AAT AAT AAT AAT AAT AAT AAA
16080112 TCA * 9 25/27 TCA TCA TCA TCA TCA TCA TCA TCA TTC
16085604 CGT * 9 25/27 CGT CGT CGT CGT CGT CGT CGT CGT TTT
16094268 GAG * 8 23/24 GAG GAG GAG GAG GAG GAG GAG GAC
16116962 CCA * 8 22/24 CCA TCT CCA CCA CCA CCA CCA CCA
16117142 GTG * 7 19/21 GTG GTT GTG GTG GTG GTA GTG
-----------------------------------------------------------------------------------------
Total sequence length......................... 16183833
Minimum Tri-Nucleotide repeat units........... 7
Total number of repeats detected.............. 425
Maximum mismatch allowed...................... 10%
-----------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------
Length distribution of Tri-Nucleotide Repeats
Number of repeated units....................>
Total 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
AAT 17 16 1 0 0 0 0 0 0 0 0 0 0
AAG 19 18 1 0 0 0 0 0 0 0 0 0 0
AAC 1 0 0 0 1 0 0 0 0 0 0 0 0
ATA 6 3 1 0 2 0 0 0 0 0 0 0 0
ATT 18 17 1 0 0 0 0 0 0 0 0 0 0
ATG 12 12 0 0 0 0 0 0 0 0 0 0 0
ATC 14 14 0 0 0 0 0 0 0 0 0 0 0
AGA 36 34 2 0 0 0 0 0 0 0 0 0 0
AGG 2 2 0 0 0 0 0 0 0 0 0 0 0
AGC 5 5 0 0 0 0 0 0 0 0 0 0 0
ACA 2 2 0 0 0 0 0 0 0 0 0 0 0
ACT 5 5 0 0 0 0 0 0 0 0 0 0 0
ACG 4 4 0 0 0 0 0 0 0 0 0 0 0
ACC 5 5 0 0 0 0 0 0 0 0 0 0 0
TAA 4 3 1 0 0 0 0 0 0 0 0 0 0
TAT 8 6 2 0 0 0 0 0 0 0 0 0 0
TAC 1 1 0 0 0 0 0 0 0 0 0 0 0
TTA 11 10 1 0 0 0 0 0 0 0 0 0 0
TTG 7 7 0 0 0 0 0 0 0 0 0 0 0
TTC 23 20 1 0 1 1 0 0 0 0 0 0 0
TGA 7 5 2 0 0 0 0 0 0 0 0 0 0
TGT 7 7 0 0 0 0 0 0 0 0 0 0 0
TGG 9 9 0 0 0 0 0 0 0 0 0 0 0
TGC 4 4 0 0 0 0 0 0 0 0 0 0 0
TCA 10 9 1 0 0 0 0 0 0 0 0 0 0
TCT 21 17 4 0 0 0 0 0 0 0 0 0 0
TCG 7 6 1 0 0 0 0 0 0 0 0 0 0
TCC 2 2 0 0 0 0 0 0 0 0 0 0 0
GAA 19 15 4 0 0 0 0 0 0 0 0 0 0
GAT 12 12 0 0 0 0 0 0 0 0 0 0 0
GAG 6 5 1 0 0 0 0 0 0 0 0 0 0
GAC 2 2 0 0 0 0 0 0 0 0 0 0 0
GTA 7 6 0 1 0 0 0 0 0 0 0 0 0
GTT 1 1 0 0 0 0 0 0 0 0 0 0 0
GTG 4 4 0 0 0 0 0 0 0 0 0 0 0
GTC 1 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 1 0 0 0 0 0 0 0 0 0 0 0
GGT 2 2 0 0 0 0 0 0 0 0 0 0 0
GCA 6 6 0 0 0 0 0 0 0 0 0 0 0
GCT 4 3 1 0 0 0 0 0 0 0 0 0 0
GCG 2 2 0 0 0 0 0 0 0 0 0 0 0
GCC 2 2 0 0 0 0 0 0 0 0 0 0 0
CAA 5 5 0 0 0 0 0 0 0 0 0 0 0
CAT 13 13 0 0 0 0 0 0 0 0 0 0 0
CAG 8 8 0 0 0 0 0 0 0 0 0 0 0
CAC 3 2 1 0 0 0 0 0 0 0 0 0 0
CTT 33 29 2 2 0 0 0 0 0 0 0 0 0
CTG 5 5 0 0 0 0 0 0 0 0 0 0 0
CTC 3 2 0 0 0 0 0 1 0 0 0 0 0
CGT 4 4 0 0 0 0 0 0 0 0 0 0 0
CGG 1 1 0 0 0 0 0 0 0 0 0 0 0
CCA 14 12 2 0 0 0 0 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes
17 AAT + 6 ATA + 4 TAA + 18 ATT + 11 TTA + 8 TAT = 64
19 AAG + 36 AGA + 19 GAA + 33 CTT + 23 TTC + 21 TCT = 151
1 AAC + 2 ACA + 5 CAA + 1 GTT + 7 TTG + 7 TGT = 23
12 ATG + 7 TGA + 12 GAT + 13 CAT + 14 ATC + 10 TCA = 68
0 AGT + 7 GTA + 0 TAG + 5 ACT + 0 CTA + 1 TAC = 13
2 AGG + 1 GGA + 6 GAG + 0 CCT + 3 CTC + 2 TCC = 14
5 AGC + 6 GCA + 8 CAG + 4 GCT + 5 CTG + 4 TGC = 32
4 ACG + 0 CGA + 2 GAC + 4 CGT + 1 GTC + 7 TCG = 18
5 ACC + 14 CCA + 3 CAC + 2 GGT + 4 GTG + 9 TGG = 37
0 GGC + 2 GCG + 1 CGG + 2 GCC + 0 CCG + 0 CGC = 5
-----------------------------------------------------------------------------------------
-----------------------------------------------------------------------------------------
Tri-nucleotide repeats in C. elegans Chromosome-I complete sequence
Minimum tri-nucleotide repeating units = 7 (allowing 10% mismatch)
Total 1 sequences searched with a total of 16183833 bp length
Total 425 repeats covering 9115 / 9927 base pairs
Length distribution of all tri-nucleotide repeats
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
no. of repeat-units 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 >=40
total repeats 274 89 23 17 12 1 0 3 0 1 1 2 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Length distribution of all tri-nucleotide repeats
No. of repeat units> 7-9 10-12 13-15 16-18 19-21 22-24 25-27 28-30 31-33 34-36 37-39 >=40
total repeats--> 386 30 3 4 1 0 1 0 0 0 0 0
AAT 16 1 0 0 0 0 0 0 0 0 0 0
AAG 18 1 0 0 0 0 0 0 0 0 0 0
AAC 0 0 0 1 0 0 0 0 0 0 0 0
ATA 3 1 0 2 0 0 0 0 0 0 0 0
ATT 17 1 0 0 0 0 0 0 0 0 0 0
ATG 12 0 0 0 0 0 0 0 0 0 0 0
ATC 14 0 0 0 0 0 0 0 0 0 0 0
AGA 34 2 0 0 0 0 0 0 0 0 0 0
AGG 2 0 0 0 0 0 0 0 0 0 0 0
AGC 5 0 0 0 0 0 0 0 0 0 0 0
ACA 2 0 0 0 0 0 0 0 0 0 0 0
ACT 5 0 0 0 0 0 0 0 0 0 0 0
ACG 4 0 0 0 0 0 0 0 0 0 0 0
ACC 5 0 0 0 0 0 0 0 0 0 0 0
TAA 3 1 0 0 0 0 0 0 0 0 0 0
TAT 6 2 0 0 0 0 0 0 0 0 0 0
TAC 1 0 0 0 0 0 0 0 0 0 0 0
TTA 10 1 0 0 0 0 0 0 0 0 0 0
TTG 7 0 0 0 0 0 0 0 0 0 0 0
TTC 20 1 0 1 1 0 0 0 0 0 0 0
TGA 5 2 0 0 0 0 0 0 0 0 0 0
TGT 7 0 0 0 0 0 0 0 0 0 0 0
TGG 9 0 0 0 0 0 0 0 0 0 0 0
TGC 4 0 0 0 0 0 0 0 0 0 0 0
TCA 9 1 0 0 0 0 0 0 0 0 0 0
TCT 17 4 0 0 0 0 0 0 0 0 0 0
TCG 6 1 0 0 0 0 0 0 0 0 0 0
TCC 2 0 0 0 0 0 0 0 0 0 0 0
GAA 15 4 0 0 0 0 0 0 0 0 0 0
GAT 12 0 0 0 0 0 0 0 0 0 0 0
GAG 5 1 0 0 0 0 0 0 0 0 0 0
GAC 2 0 0 0 0 0 0 0 0 0 0 0
GTA 6 0 1 0 0 0 0 0 0 0 0 0
GTT 1 0 0 0 0 0 0 0 0 0 0 0
GTG 4 0 0 0 0 0 0 0 0 0 0 0
GTC 1 0 0 0 0 0 0 0 0 0 0 0
GGA 1 0 0 0 0 0 0 0 0 0 0 0
GGT 2 0 0 0 0 0 0 0 0 0 0 0
GCA 6 0 0 0 0 0 0 0 0 0 0 0
GCT 3 1 0 0 0 0 0 0 0 0 0 0
GCG 2 0 0 0 0 0 0 0 0 0 0 0
GCC 2 0 0 0 0 0 0 0 0 0 0 0
CAA 5 0 0 0 0 0 0 0 0 0 0 0
CAT 13 0 0 0 0 0 0 0 0 0 0 0
CAG 8 0 0 0 0 0 0 0 0 0 0 0
CAC 2 1 0 0 0 0 0 0 0 0 0 0
CTT 29 2 2 0 0 0 0 0 0 0 0 0
CTG 5 0 0 0 0 0 0 0 0 0 0 0
CTC 2 0 0 0 0 0 1 0 0 0 0 0
CGT 4 0 0 0 0 0 0 0 0 0 0 0
CGG 1 0 0 0 0 0 0 0 0 0 0 0
CCA 12 2 0 0 0 0 0 0 0 0 0 0
-----------------------------------------------------------------------------------------------------------------------
Frequency distribution of different tri-nucleotide repeat classes in all sequences
17 AAT + 6 ATA + 4 TAA + 18 ATT + 11 TTA + 8 TAT = 64
19 AAG + 36 AGA + 19 GAA + 33 CTT + 23 TTC + 21 TCT = 151
1 AAC + 2 ACA + 5 CAA + 1 GTT + 7 TTG + 7 TGT = 23
12 ATG + 7 TGA + 12 GAT + 13 CAT + 14 ATC + 10 TCA = 68
0 AGT + 7 GTA + 0 TAG + 5 ACT + 0 CTA + 1 TAC = 13
2 AGG + 1 GGA + 6 GAG + 0 CCT + 3 CTC + 2 TCC = 14
5 AGC + 6 GCA + 8 CAG + 4 GCT + 5 CTG + 4 TGC = 32
4 ACG + 0 CGA + 2 GAC + 4 CGT + 1 GTC + 7 TCG = 18
5 ACC + 14 CCA + 3 CAC + 2 GGT + 4 GTG + 9 TGG = 37
0 GGC + 2 GCG + 1 CGG + 2 GCC + 0 CCG + 0 CGC = 5
-----------------------------------------------------------------------------------------
Frequency distribution of repeats longer than 40 bp
0 AAT + 2 ATA + 0 TAA + 0 ATT + 0 TTA + 0 TAT = 2
0 AAG + 0 AGA + 0 GAA + 2 CTT + 2 TTC + 0 TCT = 4
1 AAC + 0 ACA + 0 CAA + 0 GTT + 0 TTG + 0 TGT = 1
0 ATG + 0 TGA + 0 GAT + 0 CAT + 0 ATC + 0 TCA = 0
0 AGT + 1 GTA + 0 TAG + 0 ACT + 0 CTA + 0 TAC = 1
0 AGG + 0 GGA + 0 GAG + 0 CCT + 1 CTC + 0 TCC = 1
0 AGC + 0 GCA + 0 CAG + 0 GCT + 0 CTG + 0 TGC = 0
0 ACG + 0 CGA + 0 GAC + 0 CGT + 0 GTC + 0 TCG = 0
0 ACC + 0 CCA + 0 CAC + 0 GGT + 0 GTG + 0 TGG = 0
0 GGC + 0 GCG + 0 CGG + 0 GCC + 0 CCG + 0 CGC = 0
-----------------------------------------------------------------------------------------
Sequence-wise distribution of tri-nucleotide repeats
-----------------------------------------------------------------------------------------
Total Repeats-longer Sequence Number
Repeats than 40 bp 1
-------------------------------------------
AAT 17 0 17
AAG 19 0 19
AAC 1 1 1
ATA 6 2 6
ATT 18 0 18
ATG 12 0 12
ATC 14 0 14
AGA 36 0 36
AGG 2 0 2
AGC 5 0 5
ACA 2 0 2
ACT 5 0 5
ACG 4 0 4
ACC 5 0 5
TAA 4 0 4
TAT 8 0 8
TAC 1 0 1
TTA 11 0 11
TTG 7 0 7
TTC 23 2 23
TGA 7 0 7
TGT 7 0 7
TGG 9 0 9
TGC 4 0 4
TCA 10 0 10
TCT 21 0 21
TCG 7 0 7
TCC 2 0 2
GAA 19 0 19
GAT 12 0 12
GAG 6 0 6
GAC 2 0 2
GTA 7 1 7
GTT 1 0 1
GTG 4 0 4
GTC 1 0 1
GGA 1 0 1
GGT 2 0 2
GCA 6 0 6
GCT 4 0 4
GCG 2 0 2
GCC 2 0 2
CAA 5 0 5
CAT 13 0 13
CAG 8 0 8
CAC 3 0 3
CTT 33 2 33
CTG 5 0 5
CTC 3 1 3
CGT 4 0 4
CGG 1 0 1
CCA 14 0 14
-------------------------------------------
425 9
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© Division of Biochemical Sciences, National Chemical Laboratory, Pune 411008, INDIA